Citrus Sinensis ID: 043334
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 903 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LTB2 | 1071 | Methionine S-methyltransf | yes | no | 0.983 | 0.829 | 0.748 | 0.0 | |
| Q9SWR3 | 1088 | Methionine S-methyltransf | N/A | no | 0.990 | 0.821 | 0.731 | 0.0 | |
| Q9MBC2 | 1088 | Methionine S-methyltransf | N/A | no | 0.986 | 0.818 | 0.697 | 0.0 | |
| Q8W519 | 1091 | Methionine S-methyltransf | N/A | no | 0.990 | 0.819 | 0.682 | 0.0 | |
| Q845V2 | 364 | Histidinol-phosphate amin | yes | no | 0.203 | 0.505 | 0.244 | 1e-07 | |
| Q39K90 | 357 | Histidinol-phosphate amin | yes | no | 0.203 | 0.515 | 0.234 | 1e-06 | |
| B3ECG2 | 355 | Histidinol-phosphate amin | yes | no | 0.202 | 0.515 | 0.248 | 2e-05 | |
| Q3JMZ7 | 356 | Histidinol-phosphate amin | yes | no | 0.194 | 0.494 | 0.210 | 3e-05 | |
| Q63Q87 | 356 | Histidinol-phosphate amin | yes | no | 0.194 | 0.494 | 0.205 | 6e-05 | |
| Q62GE0 | 356 | Histidinol-phosphate amin | yes | no | 0.194 | 0.494 | 0.205 | 6e-05 |
| >sp|Q9LTB2|MMT1_ARATH Methionine S-methyltransferase OS=Arabidopsis thaliana GN=MMT1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1401 bits (3627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 676/903 (74%), Positives = 788/903 (87%), Gaps = 15/903 (1%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIFIPEDWSFTFYEGLNRHPD+I KDKTV+ELGCGNGWI+IAIA KWLPSKVYGL
Sbjct: 85 MMVIPSIFIPEDWSFTFYEGLNRHPDTIFKDKTVSELGCGNGWISIAIAAKWLPSKVYGL 144
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALD+ G+P+YD EKKTLLDRVEF+ESDLL YCRD+ IQLERIV
Sbjct: 145 DINPRAVKISWINLYLNALDDNGEPVYDEEKKTLLDRVEFYESDLLGYCRDNKIQLERIV 204
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNP+AMSK+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 205 GCIPQILNPNPEAMSKLITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 264
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQGVC+RLFERRG RV ++WQTKILQA+ DTDISALVEIE+
Sbjct: 265 KPAGIMIFNMGGRPGQGVCRRLFERRGVRVTQMWQTKILQAA------DTDISALVEIER 318
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
+SPHRFEFFMGLSGD PICARTAWAYGKAGGRISHALSVYSCQ+ QPN VK IF FLKNG
Sbjct: 319 SSPHRFEFFMGLSGDQPICARTAWAYGKAGGRISHALSVYSCQIRQPNLVKIIFDFLKNG 378
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EIS+SLDLSFED++VADEKIPFLAYLASVLK S+FP+EPPAGSKRF +LIA FM+ Y
Sbjct: 379 FQEISNSLDLSFEDETVADEKIPFLAYLASVLKNSSYFPFEPPAGSKRFCSLIAGFMRTY 438
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
H IP+N DN+VVFPSRAVAIE+A RLFSPRLAIVDE LTR LP+ WLTSL I+ T + S
Sbjct: 439 HRIPINQDNIVVFPSRAVAIESAFRLFSPRLAIVDEHLTRQLPRSWLTSLAIEDTSMDKS 498
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+ ++TVIE+P QSDLM+ELIKKLKPQVV++G+ FE +TSS+F+HLL+VT+E+G RLFL
Sbjct: 499 DD-QITVIESPHQSDLMIELIKKLKPQVVVTGMAPFEVITSSSFLHLLEVTKEIGCRLFL 557
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLP+SNGVLKYLA N LPSHAA+ICGLVKN+VYSDLEVAF+I+E +AI KA
Sbjct: 558 DISDHFELSSLPASNGVLKYLAENQLPSHAAIICGLVKNKVYSDLEVAFVITEVDAIAKA 617
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVEVLEG TA+ISQ YYGCLFHELLAFQLA+RH ER+ EKAKS E+IGFS SA+S
Sbjct: 618 LSKTVEVLEGHTAIISQYYYGCLFHELLAFQLADRHAPAERESEKAKSEEIIGFSSSAVS 677
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
+L AELS+TE + LIHMDVDQSFL IP VKAAIFESF RQN+SE+E+D+ PSI+Q+
Sbjct: 678 ILKDAELSVTEIDETSLIHMDVDQSFLQIPQSVKAAIFESFVRQNISEAEVDINPSIKQF 737
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+ SN+GFP + F+YAD S +LFNKLV+CC EGGTLC PAG+NGNYV+AA+FLKAN+
Sbjct: 738 VWSNYGFPTKSSTGFVYADGSLALFNKLVICCAQEGGTLCLPAGTNGNYVAAAKFLKANV 797
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPTES GFK+TEKTL LE+VKKPWV ISGPT++PTGL+YSN+E++ +L+ CAK+G
Sbjct: 798 VNIPTESSDGFKLTEKTLTKALESVKKPWVCISGPTVSPTGLVYSNEEMDILLSTCAKFG 857
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
A+V+IDT+FSGLE++ WDL+ LSK+ +SS +VSLLG LSL +L+GA+K GF
Sbjct: 858 AKVIIDTSFSGLEYSAT---SWDLKNALSKM----DSSLSVSLLGCLSLNLLSGAIKLGF 910
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVL+ L+DAF + PGLSKPHSTV+YA KK+L L+E KA D ++AV+E I+ LE RS+R
Sbjct: 911 LVLDQ-SLIDAFHTLPGLSKPHSTVKYAAKKMLALKEEKASDFLDAVSETIKTLEGRSRR 969
Query: 901 LKE 903
LKE
Sbjct: 970 LKE 972
|
Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1, HMT-2 and HMT-3) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium-methionine (SeMet). May play a role in phoem sulfur transport; such function is however not essential. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q9SWR3|MMT1_WOLBI Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1366 bits (3536), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/906 (73%), Positives = 771/906 (85%), Gaps = 12/906 (1%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PEDWSFTFYEG+NRHPDSI KDKTVAELGCGNGWI+IAIAEKWLP KVYGL
Sbjct: 94 MMVIPSIFMPEDWSFTFYEGINRHPDSIFKDKTVAELGCGNGWISIAIAEKWLPLKVYGL 153
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNA DE GQP+YD+E KTLLDRVEF+ESDLL+YCRD+ I+LERIV
Sbjct: 154 DINPRAVKISWINLYLNAFDEDGQPVYDSESKTLLDRVEFYESDLLSYCRDNHIELERIV 213
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK++TENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 214 GCIPQILNPNPDAMSKLVTENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGIDVI 273
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQGVCKRLFERRG V+KLWQTKILQAS DTDISALVEIEK
Sbjct: 274 KPMGIMIFNMGGRPGQGVCKRLFERRGLSVNKLWQTKILQAS------DTDISALVEIEK 327
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
N+PHRFEFFMGL GD PICARTAWA+GKA GRISHALSVYSCQL PN+VKKIF+FLKNG
Sbjct: 328 NNPHRFEFFMGLVGDRPICARTAWAFGKACGRISHALSVYSCQLRHPNEVKKIFEFLKNG 387
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FH+IS+SLDLSFEDDSVADEKIPFLAYLA VLK+ S FPYEPP G+KRFR+LIA FMK Y
Sbjct: 388 FHDISNSLDLSFEDDSVADEKIPFLAYLAGVLKDGSRFPYEPPTGNKRFRDLIASFMKTY 447
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HH+PL+ DNV +FPSRA AIEN+LRLF+PRLAIV+E LT +LP+ WLTSL I+ T +
Sbjct: 448 HHVPLSTDNVAIFPSRATAIENSLRLFTPRLAIVEEHLTCNLPRQWLTSLEIEQTRDSKT 507
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+TVIEAPRQSDLM+ELIKKLKPQVV++GI FEAVTSSAF HLL VTRE+GSRLF+
Sbjct: 508 PIDGITVIEAPRQSDLMIELIKKLKPQVVVTGIAQFEAVTSSAFEHLLRVTREIGSRLFI 567
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISD FELSSLPSS GVLKYLA LPSHAA+ICGL++N+VY+DLEVAF+ISEE+ IF A
Sbjct: 568 DISDQFELSSLPSSIGVLKYLARTPLPSHAAIICGLLRNRVYTDLEVAFVISEEQTIFDA 627
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCE--KAKSTEMIGFSRSA 598
L++TVE+L+G TALISQ YYGCLFHELL+FQ+ +R ER+ E +A +MIGFS SA
Sbjct: 628 LTRTVELLQGNTALISQYYYGCLFHELLSFQIPDRRQTAEREAENVEASDIDMIGFSSSA 687
Query: 599 ISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQ 658
ISVL+ +ELS+ T S L+HMDVDQ FLP P+ VKAAIFESFARQN++E+E DVTP ++
Sbjct: 688 ISVLSQSELSVRVTEKSSLLHMDVDQIFLPTPTPVKAAIFESFARQNVTETECDVTPILR 747
Query: 659 QYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKA 718
Q+I + + F ++ +AEFIYAD +LFNKLVLCCI EGG+LC PAGSNGNY +AA+FL A
Sbjct: 748 QFILNTWNFSVEHSAEFIYADFPLALFNKLVLCCIEEGGSLCMPAGSNGNYAAAAKFLNA 807
Query: 719 NIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK 778
NI++IPTE+EVGFK+T K L ++LETV KPWVYISGPTINPTGLLYSN+E++++LTVCA+
Sbjct: 808 NIMSIPTEAEVGFKLTAKQLSSVLETVHKPWVYISGPTINPTGLLYSNEEMKSLLTVCAR 867
Query: 779 YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838
YGAR +IDT+FSG++FN + W GW+L+ L+ L + N SF+V LLGGL K+ TG L +
Sbjct: 868 YGARTIIDTSFSGIKFNSQDWDGWNLDASLAGL--TGNPSFSVCLLGGLFFKIPTGGLSY 925
Query: 839 GFLVLNHPQLVDAF-SSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESR 897
GFLVL L D+F SSF GL+KPH+TVRY KKLL L E+K +L A + L +R
Sbjct: 926 GFLVLKSGFLADSFRSSFSGLNKPHNTVRYTAKKLLELGEQKG-NLTGAAQGQEKLLATR 984
Query: 898 SKRLKE 903
KRLKE
Sbjct: 985 LKRLKE 990
|
Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1, HMT-2 and HMT-3) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium-methionine (SeMet). May play a role in phoem sulfur transport; such function is however not essential. Wollastonia biflora (taxid: 101473) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q9MBC2|MMT1_HORVU Methionine S-methyltransferase OS=Hordeum vulgare GN=MMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1312 bits (3396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 628/901 (69%), Positives = 744/901 (82%), Gaps = 10/901 (1%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MM IPSIFIPEDWSFTFYEGLNRHPDSI +DKTVAELGCGNGWI+IA+AEKW PSKVYGL
Sbjct: 92 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIALAEKWCPSKVYGL 151
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPR I+I+WINLYLNALD+ G PIYDAE KTLLDRVEF+ESDLL+YCRD+ I+L+RIV
Sbjct: 152 DINPRPIKIAWINLYLNALDDDGLPIYDAEGKTLLDRVEFYESDLLSYCRDNKIELDRIV 211
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNP+AMSKI+TEN+SEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 212 GCIPQILNPNPEAMSKIVTENSSEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 271
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KPSG+M+FNMGGRPGQGVC+RLF RRGFR++KLWQTKI+QA+ DTDISALVEIEK
Sbjct: 272 KPSGLMVFNMGGRPGQGVCERLFLRRGFRINKLWQTKIMQAA------DTDISALVEIEK 325
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NS HRFEFFM L GD P+CARTAWAY K+GGRISHALSVYSCQL QPNQVKKIF+FLK+G
Sbjct: 326 NSRHRFEFFMDLVGDQPVCARTAWAYMKSGGRISHALSVYSCQLRQPNQVKKIFEFLKDG 385
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHE+SSSLDLSF+DDSVADEKIPFLAYLAS L+E P EPPAG FRNL+A FMK Y
Sbjct: 386 FHEVSSSLDLSFDDDSVADEKIPFLAYLASFLQENKSNPCEPPAGCLNFRNLVAGFMKSY 445
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL DNVVVFPSRAVAIENALRLFSP LAIVDE LTRHLPK WLTSL I + N
Sbjct: 446 HHIPLTPDNVVVFPSRAVAIENALRLFSPGLAIVDEHLTRHLPKQWLTSLAI---EESNH 502
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
++ +TVIEAPRQSDL++ELI+KLKPQVV++G+ FEA+TS+AFV+LL VT++VGSRL L
Sbjct: 503 AKDTVTVIEAPRQSDLLIELIRKLKPQVVVTGMAQFEAITSAAFVNLLSVTKDVGSRLLL 562
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DIS+H ELSSLPSSNGVLKYLAG LPSHAA++CGLVKNQVYSDLEVAF ISE+ ++KA
Sbjct: 563 DISEHLELSSLPSSNGVLKYLAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDPTVYKA 622
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LS+T+E+LEG T++ISQ+YYGCLFHELLAFQ+ +RH +ER+ + S EMIGFS SA+S
Sbjct: 623 LSQTIELLEGHTSVISQHYYGCLFHELLAFQIGDRHPQQEREPAEVISKEMIGFSSSAMS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
L AE + + SG+IHMD+D+SFLP+PS V A+IFESF RQN+++SE DV SIQQ
Sbjct: 683 TLEGAEFFVPGSMESGVIHMDLDRSFLPVPSAVNASIFESFVRQNITDSETDVRSSIQQL 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+K ++GF +E IY + +LFNKLVLCC+ E GTL FP G+NG+YV+AA+F+ A
Sbjct: 743 VKDSYGFSAGGASEIIYGNTCLALFNKLVLCCMQEQGTLLFPLGTNGHYVNAAKFVNATT 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
+ IPT+++ GFK+ L LE V +PWVYISGPTINPTG LYS+ +I +L+VCA YG
Sbjct: 803 LTIPTKADSGFKIEPSALADTLEKVSQPWVYISGPTINPTGFLYSDDDIAELLSVCATYG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARVVIDT+ SGLEF G W+LE CLS + SS SF+V LLG LS ++ T L FGF
Sbjct: 863 ARVVIDTSSSGLEFQATGCSQWNLERCLSNVKSS-KPSFSVVLLGELSFELTTAGLDFGF 921
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L+++ LVD F SFP LS+PHST++Y +KLLGL+ +K + + + E L++R+ +
Sbjct: 922 LIMSDSSLVDTFYSFPSLSRPHSTLKYTFRKLLGLKNQKDQHFSDLILEQKETLKNRADQ 981
Query: 901 L 901
L
Sbjct: 982 L 982
|
Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1, HMT-2 and HMT-3) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium-methionine (SeMet). May play a role in phoem sulfur transport; such function is however not essential. Hordeum vulgare (taxid: 4513) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q8W519|MMT1_MAIZE Methionine S-methyltransferase OS=Zea mays GN=MMT1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1296 bits (3355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 615/901 (68%), Positives = 735/901 (81%), Gaps = 7/901 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MM IPSIFIPEDWSFTFYEGLNRHPDSI +DKTVAELGCGNGWI+IA+AEKW PSKVYGL
Sbjct: 94 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIALAEKWCPSKVYGL 153
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++I+WINLYLNALD+ G PIYD E KTLLDRVEF+ESDLL+YCRD+ I+L+RIV
Sbjct: 154 DINPRAVKIAWINLYLNALDDDGLPIYDGEGKTLLDRVEFYESDLLSYCRDNKIELDRIV 213
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNP+AMSKI+TEN+SEEFLY+LSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 214 GCIPQILNPNPEAMSKIVTENSSEEFLYALSNYCALQGFVEDQFGLGLIARAVEEGISVI 273
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KPSGIM+FNMGGRPGQGVC+RLF RRGFR+ KLWQTKI+Q + DTDISALVE EK
Sbjct: 274 KPSGIMVFNMGGRPGQGVCERLFRRRGFRITKLWQTKIMQXA------DTDISALVEXEK 327
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NS HRFEFFM L GB PICARTAWAY K+GG ISHALSVYSCQL QPNQVKKIF+FLK+G
Sbjct: 328 NSRHRFEFFMDLVGBQPICARTAWAYMKSGGHISHALSVYSCQLRQPNQVKKIFEFLKDG 387
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHE+SSSLDLSF+DDSVA+EKIPFLAYLAS LKE P EPPAG FR L+A FMK Y
Sbjct: 388 FHEVSSSLDLSFDDDSVAEEKIPFLAYLASFLKENKSNPCEPPAGCLNFRKLVAGFMKSY 447
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL DNVVVFPSR+VAIENAL+LFSP LAIVDE LTRHLPK WLTSL I+G N
Sbjct: 448 HHIPLTPDNVVVFPSRSVAIENALQLFSPALAIVDEHLTRHLPKQWLTSLAIEGRADCNH 507
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
++ +TVIEAPRQSDL++ELI+KL+PQVV++G+ FEA+TS+AF +LL+VT++VGSRLFL
Sbjct: 508 ADGTVTVIEAPRQSDLLIELIRKLQPQVVVTGMAQFEAITSAAFENLLNVTKDVGSRLFL 567
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DIS+H ELSSLPSSNGVLKYLAG LPSHAA++CGLVKNQVYSDLEVAF ISE+ A++KA
Sbjct: 568 DISEHLELSSLPSSNGVLKYLAGKTLPSHAAILCGLVKNQVYSDLEVAFAISEDAAVYKA 627
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LS+T+E+LEG T+LISQ+YYGCLFHELLAFQ+A+RH +ER + +MIGFS A+S
Sbjct: 628 LSQTIELLEGHTSLISQHYYGCLFHELLAFQIADRHPQQERQPAEVIPQQMIGFSDPAVS 687
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
L + E + + S +IHMD+D+SFLP+PS V A++FESF RQN+++SE DV SIQQ
Sbjct: 688 TLKATEFFVPGSAESSIIHMDLDRSFLPVPSAVNASVFESFVRQNITDSETDVRSSIQQL 747
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+K ++G AE IY + S +LFNKLVLCC+ E GTL FP G+NG+YVSAA+F+ A+
Sbjct: 748 VKDSYGLSAAGCAEIIYGNTSVALFNKLVLCCMQEQGTLLFPLGTNGHYVSAAKFVNAST 807
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
V IPT GF++ K L L+ V +PWVY+ GPTINPTG LYS+ +I +L+VCA+YG
Sbjct: 808 VTIPTNPSSGFRIEPKVLADTLKNVSRPWVYVCGPTINPTGFLYSDSDIRELLSVCAEYG 867
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARVVIDT+FSGLE+ +GW W+L GCLS L S SF+V LLG LS + G FGF
Sbjct: 868 ARVVIDTSFSGLEYETDGWRQWNLAGCLSSLKRS-EPSFSVVLLGELSFALTAGGHDFGF 926
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
++L L + F SF LS+PH+T++Y KKLLGL+ +K + + + E L++R+ +
Sbjct: 927 VILGDSSLAETFHSFSSLSRPHTTLKYTFKKLLGLKNQKDQHFSDLIVEQKEELKNRANQ 986
Query: 901 L 901
L
Sbjct: 987 L 987
|
Catalyzes the S-methylmethionine (SMM) biosynthesis from adenosyl-L-homocysteine (AdoMet) and methionine. SMM biosynthesis (by MMT1) and degradation (by HMT-1, HMT-2 and HMT-3) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level. Also able to catalyze the selenium-methylmethionine (SeMM) from AdoMet and selenium-methionine (SeMet). May play a role in phoem sulfur transport; such function is however not essential. Zea mays (taxid: 4577) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q845V2|HIS8_BURM1 Histidinol-phosphate aminotransferase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 607 LSITETP---NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKS 663
L++T P SG + +D ++ P+P + AA+ E AR ++ ++ ++
Sbjct: 20 LAMTSYPVPDASGFVKLDAMENPYPLPEPLAAALGERLARVALNRYPAPRPAALLDKLRH 79
Query: 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNI 723
G P + + + S + + + + C G + P Y +ARF + + V +
Sbjct: 80 AMGVPG--TCDVLLGNGSDEIISMISVACAKPGAKVLAPVPGFVMYELSARFAQLDFVGV 137
Query: 724 PTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783
P ++++ + + L I E + VY++ P NPTG LY + +IE IL A + +
Sbjct: 138 PLKADLTLDV-DAMLAAIAEH-RPAIVYLAYPN-NPTGTLYDDADIERILR--AATHSLI 192
Query: 784 VIDTAFSGLEFNYEGW 799
VID A+ F W
Sbjct: 193 VIDEAYQ--PFAQHSW 206
|
Burkholderia multivorans (strain ATCC 17616 / 249) (taxid: 395019) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q39K90|HIS81_BURS3 Histidinol-phosphate aminotransferase 1 OS=Burkholderia sp. (strain 383) GN=hisC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 12/196 (6%)
Query: 607 LSITETP---NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKS 663
L++T P SG + +D ++ P+P + AA+ E A+ ++ ++ ++
Sbjct: 13 LAMTSYPVPDASGFVKLDAMENPYPLPEPLAAALGERLAQVALNRYPAPRPAALLDKLRH 72
Query: 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNI 723
G P E + + S + + + + C G + P Y +A+ + V +
Sbjct: 73 AMGVPA--GCEVLLGNGSDEIISMMSMACAKPGAKVLAPVPGFVMYELSAKLAQLEFVGV 130
Query: 724 PTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783
P ++++ + + L I E + VY++ P NPTG LY + +IE I V A + +
Sbjct: 131 PLKADLTLDV-DAMLAAIAEH-RPAIVYLAYPN-NPTGTLYDDADIERI--VAAARHSLI 185
Query: 784 VIDTAFSGLEFNYEGW 799
VID A+ F W
Sbjct: 186 VIDEAYQ--PFAVRSW 199
|
Burkholderia sp. (strain 383) (taxid: 269483) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|B3ECG2|HIS8_CHLL2 Histidinol-phosphate aminotransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=hisC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 34/217 (15%)
Query: 676 IYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTE 735
I ++ S + + L C+ G + P S Y A L+A+IV++P + + F
Sbjct: 84 IMSNGSNEMLYTIFLACLSPGKKILIPEPSFSLYEKIALLLQADIVSVPMQPSLDFD--A 141
Query: 736 KTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN 795
+L+ + K ++ +S P NPTG ++ +I I+ C A V++D A+ +EF+
Sbjct: 142 DSLIERAKQEKVDFIVLSTPN-NPTGKSLASPDIARIVREC---DAIVLVDEAY--IEFS 195
Query: 796 YEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN--------HPQ 847
E +E C N+ +L +S + ++ GF + N P+
Sbjct: 196 REHSVLALIEECP-----------NLIVLRTMSKALALAGMRIGFAIANPLLMAEIAKPK 244
Query: 848 LVDAFSSFPGLSKPHSTVRY------AIKKLLGLRER 878
+ A S F ++ H +RY A+ +LG RER
Sbjct: 245 IPFASSRFAEITLQH-VLRYYYLVTDAVSYILGERER 280
|
Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q3JMZ7|HIS82_BURP1 Histidinol-phosphate aminotransferase 2 OS=Burkholderia pseudomallei (strain 1710b) GN=hisC2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAE 674
+G + +D ++ +P+ + A + E A ++ ++ +++ G P +
Sbjct: 24 TGFVKLDAMENPYSLPAPLAAELGERLAHVALNRYPAPRPAALIDRLRAVTGVPA--ACD 81
Query: 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734
+ + S L + L + C G + P Y +A+F + V +P +++ +
Sbjct: 82 VLLGNGSDELISMLAMACAKPGAKVLAPVPGFVMYELSAKFAQLEFVGVPLRADLTLDI- 140
Query: 735 EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794
++ L + VY++ P NPTG LY ++++E I+ A + VVID A+ F
Sbjct: 141 -DAMLAALAEHRPALVYLAYPN-NPTGTLYPDEDVERIIAAAA--ASLVVIDEAYQ--PF 194
Query: 795 NYEGW 799
W
Sbjct: 195 AQRSW 199
|
Burkholderia pseudomallei (strain 1710b) (taxid: 320372) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q63Q87|HIS82_BURPS Histidinol-phosphate aminotransferase 2 OS=Burkholderia pseudomallei (strain K96243) GN=hisC2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAE 674
+G + +D ++ +P+ + A + E A ++ ++ +++ G P +
Sbjct: 24 TGFVKLDAMENPYSLPAPLAAELGERLAHVALNRYPAPRPAALIDRLRAVTGVPA--ACD 81
Query: 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734
+ + S + + L + C G + P Y +A+F + V +P +++ +
Sbjct: 82 VLLGNGSDEIISMLAMACAKPGAKVLAPVPGFVMYELSAKFAQLEFVGVPLRADLTLDI- 140
Query: 735 EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794
++ L + VY++ P NPTG LY ++++E I+ A + VVID A+ F
Sbjct: 141 -DAMLAALAEHRPALVYLAYPN-NPTGTLYPDEDVERIIAAAA--ASLVVIDEAYQ--PF 194
Query: 795 NYEGW 799
W
Sbjct: 195 AQRSW 199
|
Burkholderia pseudomallei (strain K96243) (taxid: 272560) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
| >sp|Q62GE0|HIS81_BURMA Histidinol-phosphate aminotransferase 1 OS=Burkholderia mallei (strain ATCC 23344) GN=hisC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 81/185 (43%), Gaps = 9/185 (4%)
Query: 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAE 674
+G + +D ++ +P+ + A + E A ++ ++ +++ G P +
Sbjct: 24 TGFVKLDAMENPYSLPAPLAAELGERLAHVALNRYPAPRPAALIDRLRAVTGVPA--ACD 81
Query: 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734
+ + S + + L + C G + P Y +A+F + V +P +++ +
Sbjct: 82 VLLGNGSDEIISMLAMACAKPGAKVLAPVPGFVMYELSAKFAQLEFVGVPLRADLTLDI- 140
Query: 735 EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794
++ L + VY++ P NPTG LY ++++E I+ A + VVID A+ F
Sbjct: 141 -DAMLAALAEHRPALVYLAYPN-NPTGTLYPDEDVERIIAAAA--ASLVVIDEAYQ--PF 194
Query: 795 NYEGW 799
W
Sbjct: 195 AQRSW 199
|
Burkholderia mallei (strain ATCC 23344) (taxid: 243160) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 903 | ||||||
| 225465288 | 1092 | PREDICTED: methionine S-methyltransferas | 0.993 | 0.821 | 0.817 | 0.0 | |
| 297739444 | 1089 | unnamed protein product [Vitis vinifera] | 0.990 | 0.820 | 0.816 | 0.0 | |
| 255569806 | 1001 | Methionine S-methyltransferase, putative | 0.991 | 0.894 | 0.810 | 0.0 | |
| 449431900 | 1084 | PREDICTED: methionine S-methyltransferas | 0.991 | 0.825 | 0.796 | 0.0 | |
| 224129814 | 1095 | methionine s-methyltransferase [Populus | 0.998 | 0.823 | 0.799 | 0.0 | |
| 92893696 | 1098 | SAM (and some other nucleotide) binding | 1.0 | 0.822 | 0.790 | 0.0 | |
| 449478096 | 1084 | PREDICTED: methionine S-methyltransferas | 0.991 | 0.825 | 0.794 | 0.0 | |
| 357445181 | 1092 | Methionine S-methyltransferase [Medicago | 0.993 | 0.821 | 0.789 | 0.0 | |
| 356541838 | 1090 | PREDICTED: methionine S-methyltransferas | 0.993 | 0.822 | 0.781 | 0.0 | |
| 356559151 | 1091 | PREDICTED: methionine S-methyltransferas | 0.993 | 0.822 | 0.778 | 0.0 |
| >gi|225465288|ref|XP_002270977.1| PREDICTED: methionine S-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1540 bits (3987), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 738/903 (81%), Positives = 812/903 (89%), Gaps = 6/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIFIPEDWSFTFYEGLNRHPDSI KDKTVAELGCGNGWI+IAIAEKW P KVYGL
Sbjct: 89 MMVIPSIFIPEDWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIAIAEKWSPLKVYGL 148
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALD+ GQPIYD E KTLLDRVEFHESDLLAYCRD I+LERIV
Sbjct: 149 DINPRAVKISWINLYLNALDDNGQPIYDGENKTLLDRVEFHESDLLAYCRDRGIELERIV 208
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 209 GCIPQILNPNPDAMSKMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIAVI 268
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQGVCKRLFERRGFRV +LWQTK++QA+ DTDISALVEIEK
Sbjct: 269 KPMGIMIFNMGGRPGQGVCKRLFERRGFRVTRLWQTKVIQAA------DTDISALVEIEK 322
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGL+GD PICARTAWAYGKAGGRISHALSVYSCQL QPNQVK IF+FLKNG
Sbjct: 323 NSPHRFEFFMGLAGDQPICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKTIFEFLKNG 382
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHEISSSLDL FEDDSVADEKIPFLAYLASVLK SFFPYEPPAGSKRFRNLIA FM+ Y
Sbjct: 383 FHEISSSLDLFFEDDSVADEKIPFLAYLASVLKGNSFFPYEPPAGSKRFRNLIAGFMRTY 442
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HH+P+NADNVV+FPSRAVAIENALRLFSPRLAIVDE LTRHLP+ WLTSL I+ T+N
Sbjct: 443 HHVPVNADNVVIFPSRAVAIENALRLFSPRLAIVDEDLTRHLPRQWLTSLKIESAKTDNP 502
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
SE LTVIEAPRQSDLM+ELIKKLKPQVV++GI FEAVTSSAF HLL++T ++GSRLFL
Sbjct: 503 SEDVLTVIEAPRQSDLMIELIKKLKPQVVVTGIAHFEAVTSSAFEHLLNITGKIGSRLFL 562
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
D+SDHFELSSLPSSNGVLKYL+G LPSHAAVICGLVKNQVYSDLEVAF+ISEEEAIFKA
Sbjct: 563 DMSDHFELSSLPSSNGVLKYLSGTPLPSHAAVICGLVKNQVYSDLEVAFVISEEEAIFKA 622
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVE+LEG TALISQ YYGCLF ELLAFQLA+RH ER CE K EMIGF+ SA+S
Sbjct: 623 LSKTVELLEGNTALISQYYYGCLFRELLAFQLADRHPPAERVCENEKPAEMIGFASSALS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VL++AELSITET NS +IHMDVD+SFLP PS VKA+IFESF+RQNM+ESE D+T SI+Q+
Sbjct: 683 VLDNAELSITETENSSVIHMDVDKSFLPFPSSVKASIFESFSRQNMAESETDITTSIRQF 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
IKSN+GFP EFIYADCS +LFNKLVLCCI EGGTLCFPAGSNGN+VS+A+FLKANI
Sbjct: 743 IKSNYGFPTSSGTEFIYADCSLALFNKLVLCCIQEGGTLCFPAGSNGNHVSSAKFLKANI 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPT SE GFK++EKTL + E+V PW+YISGPTINPTGL+YSN E+ENIL++CAK+G
Sbjct: 803 VNIPTNSEFGFKLSEKTLAGVFESVNNPWLYISGPTINPTGLVYSNGEMENILSICAKFG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
A+VV+DT+FSGLE+++EG GGWDLEG L +LYSS+ SF VSLLGGLSLKMLTG L GF
Sbjct: 863 AKVVLDTSFSGLEYDFEGCGGWDLEGILVRLYSSSKPSFCVSLLGGLSLKMLTGGLTCGF 922
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVLN P L+DAF SFPGLSKPHSTV+Y +KKLLGLRE+KA L++AVAEH R L SR+KR
Sbjct: 923 LVLNQPLLIDAFYSFPGLSKPHSTVKYTVKKLLGLREQKAGGLLDAVAEHKRILCSRAKR 982
Query: 901 LKE 903
LK+
Sbjct: 983 LKQ 985
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739444|emb|CBI29626.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1535 bits (3973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/903 (81%), Positives = 809/903 (89%), Gaps = 9/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIFIPEDWSFTFYEGLNRHPDSI KDKTVAELGCGNGWI+IAIAEKW P KVYGL
Sbjct: 89 MMVIPSIFIPEDWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIAIAEKWSPLKVYGL 148
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALD+ GQPIYD E KTLLDRVEFHESDLLAYCRD I+LERIV
Sbjct: 149 DINPRAVKISWINLYLNALDDNGQPIYDGENKTLLDRVEFHESDLLAYCRDRGIELERIV 208
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 209 GCIPQILNPNPDAMSKMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIAVI 268
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQGVCKRLFERRGFRV +LWQTK A+DTDISALVEIEK
Sbjct: 269 KPMGIMIFNMGGRPGQGVCKRLFERRGFRVTRLWQTK---------AADTDISALVEIEK 319
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGL+GD PICARTAWAYGKAGGRISHALSVYSCQL QPNQVK IF+FLKNG
Sbjct: 320 NSPHRFEFFMGLAGDQPICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKTIFEFLKNG 379
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHEISSSLDL FEDDSVADEKIPFLAYLASVLK SFFPYEPPAGSKRFRNLIA FM+ Y
Sbjct: 380 FHEISSSLDLFFEDDSVADEKIPFLAYLASVLKGNSFFPYEPPAGSKRFRNLIAGFMRTY 439
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HH+P+NADNVV+FPSRAVAIENALRLFSPRLAIVDE LTRHLP+ WLTSL I+ T+N
Sbjct: 440 HHVPVNADNVVIFPSRAVAIENALRLFSPRLAIVDEDLTRHLPRQWLTSLKIESAKTDNP 499
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
SE LTVIEAPRQSDLM+ELIKKLKPQVV++GI FEAVTSSAF HLL++T ++GSRLFL
Sbjct: 500 SEDVLTVIEAPRQSDLMIELIKKLKPQVVVTGIAHFEAVTSSAFEHLLNITGKIGSRLFL 559
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
D+SDHFELSSLPSSNGVLKYL+G LPSHAAVICGLVKNQVYSDLEVAF+ISEEEAIFKA
Sbjct: 560 DMSDHFELSSLPSSNGVLKYLSGTPLPSHAAVICGLVKNQVYSDLEVAFVISEEEAIFKA 619
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVE+LEG TALISQ YYGCLF ELLAFQLA+RH ER CE K EMIGF+ SA+S
Sbjct: 620 LSKTVELLEGNTALISQYYYGCLFRELLAFQLADRHPPAERVCENEKPAEMIGFASSALS 679
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VL++AELSITET NS +IHMDVD+SFLP PS VKA+IFESF+RQNM+ESE D+T SI+Q+
Sbjct: 680 VLDNAELSITETENSSVIHMDVDKSFLPFPSSVKASIFESFSRQNMAESETDITTSIRQF 739
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
IKSN+GFP EFIYADCS +LFNKLVLCCI EGGTLCFPAGSNGN+VS+A+FLKANI
Sbjct: 740 IKSNYGFPTSSGTEFIYADCSLALFNKLVLCCIQEGGTLCFPAGSNGNHVSSAKFLKANI 799
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPT SE GFK++EKTL + E+V PW+YISGPTINPTGL+YSN E+ENIL++CAK+G
Sbjct: 800 VNIPTNSEFGFKLSEKTLAGVFESVNNPWLYISGPTINPTGLVYSNGEMENILSICAKFG 859
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
A+VV+DT+FSGLE+++EG GGWDLEG L +LYSS+ SF VSLLGGLSLKMLTG L GF
Sbjct: 860 AKVVLDTSFSGLEYDFEGCGGWDLEGILVRLYSSSKPSFCVSLLGGLSLKMLTGGLTCGF 919
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVLN P L+DAF SFPGLSKPHSTV+Y +KKLLGLRE+KA L++AVAEH R L SR+KR
Sbjct: 920 LVLNQPLLIDAFYSFPGLSKPHSTVKYTVKKLLGLREQKAGGLLDAVAEHKRILCSRAKR 979
Query: 901 LKE 903
LK+
Sbjct: 980 LKQ 982
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255569806|ref|XP_002525867.1| Methionine S-methyltransferase, putative [Ricinus communis] gi|223534872|gb|EEF36561.1| Methionine S-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1522 bits (3941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/903 (81%), Positives = 811/903 (89%), Gaps = 8/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIFIPEDWSFTFYEGLNRHPDSI KDKTVAELGCGNGWI+IAIA+KWLPSKVYGL
Sbjct: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIAIADKWLPSKVYGL 60
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA+++SWINLYLNALDE GQPIYDAEKKTLLDRV+FHESDLL+YCRDHDIQLERIV
Sbjct: 61 DINPRAVKVSWINLYLNALDENGQPIYDAEKKTLLDRVQFHESDLLSYCRDHDIQLERIV 120
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 121 GCIPQILNPNPDAMSKMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 180
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQ VCKRLFERRGF V+KLWQTK++QA+ DTDISALVEIEK
Sbjct: 181 KPMGIMIFNMGGRPGQAVCKRLFERRGFHVNKLWQTKVIQAA------DTDISALVEIEK 234
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGLSGD PICARTAWAYGKAGGRI+HALSVYSCQL QPNQVKKIF+FLKNG
Sbjct: 235 NSPHRFEFFMGLSGDQPICARTAWAYGKAGGRIAHALSVYSCQLRQPNQVKKIFEFLKNG 294
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHE+SSSLDLSFEDDSVADEKIPFLA+LAS LKE+S FPYE PAGS FRNLIA F+K Y
Sbjct: 295 FHEVSSSLDLSFEDDSVADEKIPFLAFLASELKEKSCFPYESPAGSIYFRNLIAGFLKIY 354
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL ++NVV+FPSRAVAIE+ LRLFSPR+AIVDE LTRHLP+ WLTSL I+GT+ +
Sbjct: 355 HHIPLKSNNVVIFPSRAVAIEHTLRLFSPRVAIVDEHLTRHLPRQWLTSLAIEGTENYDP 414
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
S+ +TVI+APRQSDLMVELIKKLKPQVVI+G+ FEAVTSSAFV LLDVTRE+GSRLFL
Sbjct: 415 SKDVITVIDAPRQSDLMVELIKKLKPQVVITGMAQFEAVTSSAFVQLLDVTREIGSRLFL 474
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDH ELSSLPS NGVLKYLAG LPSHAA++CG VKN+VYSDLEVAF+ISEEEA+FKA
Sbjct: 475 DISDHLELSSLPSPNGVLKYLAGTRLPSHAAILCGFVKNKVYSDLEVAFVISEEEAVFKA 534
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVEVLEG TA I Q YYGCLFHELLAFQL +RH ERD EK KS E IGF+ SAI
Sbjct: 535 LSKTVEVLEGNTAPIRQLYYGCLFHELLAFQLVDRHPLPERDFEKVKSVEAIGFASSAIP 594
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN +ELSI+E S LIHMD+DQSF+PIPS VKAAIFESFARQNM+ESEIDVTPSI+Q+
Sbjct: 595 VLNDSELSISEEEKSSLIHMDIDQSFMPIPSPVKAAIFESFARQNMAESEIDVTPSIKQF 654
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
IK+N+GFP+D EF+YAD SQ+LFN+L+LCCI EGGT CFPAGSNGNYVSAA+FLKAN+
Sbjct: 655 IKNNYGFPMDNKTEFVYADFSQALFNRLILCCIQEGGTFCFPAGSNGNYVSAAKFLKANV 714
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
++IPT+S GFK+T+K L +L+TV KPWVYISGPTI PTGLLYSNKE+ENILT CA++G
Sbjct: 715 MSIPTDSGSGFKLTDKLLDGVLDTVNKPWVYISGPTITPTGLLYSNKEMENILTTCARFG 774
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+FSGLEF EGWGGW+LE SKL SS N SF VSL+GGLSLK+ +G LKFG+
Sbjct: 775 ARVIIDTSFSGLEF--EGWGGWNLETTSSKLNSSNNPSFCVSLIGGLSLKLSSGVLKFGY 832
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVLN P LVDAF SFPGLSKPHSTV+YAIKKLL L E+KARDL +AVAE RNL+SRS+R
Sbjct: 833 LVLNDPFLVDAFYSFPGLSKPHSTVKYAIKKLLSLNEQKARDLTDAVAEQTRNLKSRSQR 892
Query: 901 LKE 903
+KE
Sbjct: 893 MKE 895
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449431900|ref|XP_004133738.1| PREDICTED: methionine S-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1500 bits (3883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/903 (79%), Positives = 803/903 (88%), Gaps = 8/903 (0%)
Query: 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLD 61
MVIPSIF+PEDWSFTF+EGLNRHP SI KD+TVAELGCGNGWI+IAIA+KWLP KVYGLD
Sbjct: 90 MVIPSIFVPEDWSFTFFEGLNRHPASIFKDRTVAELGCGNGWISIAIADKWLPLKVYGLD 149
Query: 62 INPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVG 121
INPRA+++SWINLYLNALDEKGQPI+D EKKTLLDRVEFHESDLLAYCRD+DIQLERIVG
Sbjct: 150 INPRAVKVSWINLYLNALDEKGQPIFDGEKKTLLDRVEFHESDLLAYCRDNDIQLERIVG 209
Query: 122 CIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIK 181
CIPQILNPNPDAMS++ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VIK
Sbjct: 210 CIPQILNPNPDAMSRMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK 269
Query: 182 PSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKN 241
P GIMIFNMGGRPGQGVCKRLFERRGFR+ KLWQTKILQA+ DTDISALVEIEKN
Sbjct: 270 PMGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKILQAA------DTDISALVEIEKN 323
Query: 242 SPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNGF 301
SPHRFEFFMGLSGD PICARTAWAYGKAGGRISHALSVYSCQL QPNQVK IF FLK+GF
Sbjct: 324 SPHRFEFFMGLSGDQPICARTAWAYGKAGGRISHALSVYSCQLLQPNQVKTIFDFLKSGF 383
Query: 302 HEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYH 361
EISSSLDLSF+DDSVADEKIPFLAYLAS+LK+ ++FPYEPPAGS RFRNLIA FMK YH
Sbjct: 384 QEISSSLDLSFQDDSVADEKIPFLAYLASILKDSAYFPYEPPAGSLRFRNLIAGFMKTYH 443
Query: 362 HIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENSS 421
H+P++A NVV+FPSRAVAIENALRLFSPRLAIVDE LTRHLP+ WLTSL I T +
Sbjct: 444 HVPVSAGNVVIFPSRAVAIENALRLFSPRLAIVDEHLTRHLPRQWLTSLNID-TGVNGAG 502
Query: 422 EHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFLD 481
+ LTVIEAP QSDLM+ELIKKLKPQVV++G+ FEAVTSSAFVHLLDVTRE+GSRLFLD
Sbjct: 503 DDVLTVIEAPSQSDLMMELIKKLKPQVVVTGMAHFEAVTSSAFVHLLDVTREIGSRLFLD 562
Query: 482 ISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKAL 541
ISD+FELSSLPSSNGVLKYLAGN LPSHAA++CGLVKNQVY+DLEVAF+ISEEEAIFKAL
Sbjct: 563 ISDNFELSSLPSSNGVLKYLAGNSLPSHAAIVCGLVKNQVYTDLEVAFVISEEEAIFKAL 622
Query: 542 SKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEK-AKSTEMIGFSRSAIS 600
SKTVE+LEG TA ISQ YYGCLFHELLAFQLA+RH +R+C+K A S E+IGFS SAIS
Sbjct: 623 SKTVELLEGKTAPISQYYYGCLFHELLAFQLADRHLPAQRECDKSASSREIIGFSSSAIS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN+AELSI +T NS LIHMDVD+ FLP P VKAAIFESF+RQNMSESEIDVT S++Q+
Sbjct: 683 VLNNAELSIDQTDNSSLIHMDVDEIFLPTPISVKAAIFESFSRQNMSESEIDVTTSVKQF 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+KSN+GFPI+ N++FIYAD + +LFNK+VLCCI EGGT+CFP G+NGNYV +A+FLKA +
Sbjct: 743 VKSNYGFPIENNSDFIYADSALTLFNKMVLCCIQEGGTICFPVGTNGNYVHSAKFLKAKV 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPT SE GFK+TE L +L VK WVYISGPTINPTGL+Y KEIEN+LT C+K+G
Sbjct: 803 VNIPTRSEDGFKLTENALNQVLNNVKNAWVYISGPTINPTGLIYDQKEIENLLTACSKFG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+FSGLEF+YE W GW+LEG LS+L S N SF+V LLGGLS MLT ALKFGF
Sbjct: 863 ARVIIDTSFSGLEFDYESWSGWNLEGVLSRLCQSNNPSFSVCLLGGLSPMMLTDALKFGF 922
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVLN P L++ F SF GLS+PHSTV+YAIKKLLGLR RK+ D+ +AV I++L SRSKR
Sbjct: 923 LVLNQPPLIELFHSFSGLSRPHSTVKYAIKKLLGLRVRKSGDMWDAVTRQIKDLRSRSKR 982
Query: 901 LKE 903
LKE
Sbjct: 983 LKE 985
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129814|ref|XP_002328809.1| methionine s-methyltransferase [Populus trichocarpa] gi|222839107|gb|EEE77458.1| methionine s-methyltransferase [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1496 bits (3874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 722/903 (79%), Positives = 805/903 (89%), Gaps = 1/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PE+WSFTFYEGLNRHPDSI KDKTVAELGCGNGWI+IA+AEKWLPSKVYGL
Sbjct: 88 MMVIPSIFMPENWSFTFYEGLNRHPDSIFKDKTVAELGCGNGWISIALAEKWLPSKVYGL 147
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA+++SWINLYLNA DEKGQ IYDAEKKTLLDRVEF+ESDLL+Y RDH+I+LERIV
Sbjct: 148 DINPRAVKVSWINLYLNAFDEKGQVIYDAEKKTLLDRVEFYESDLLSYIRDHNIELERIV 207
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 208 GCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGIAVI 267
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQ VCK LFERRGF V+KLWQTKI+QA F A+DTDISALVEIEK
Sbjct: 268 KPMGIMIFNMGGRPGQAVCKHLFERRGFHVNKLWQTKIIQARMNFSAADTDISALVEIEK 327
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGL+GD PICARTAWAYG+AGGRI+HALSVYSCQL QPNQVKKIF+FLKNG
Sbjct: 328 NSPHRFEFFMGLTGDQPICARTAWAYGQAGGRIAHALSVYSCQLRQPNQVKKIFEFLKNG 387
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FH++SSSLDL FEDDSVADEKIPFLA LA LKE S FPYEPPAGS FRNLIA F+K Y
Sbjct: 388 FHDVSSSLDLFFEDDSVADEKIPFLASLADQLKENSCFPYEPPAGSIHFRNLIASFLKTY 447
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPLN+DNVVVFPSRAVAIENAL LFSPRLAIVDE LT+HLP+ WLTSL I+ ++++
Sbjct: 448 HHIPLNSDNVVVFPSRAVAIENALHLFSPRLAIVDEHLTQHLPRKWLTSLAIESAESDDP 507
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
S+ +TVIEAPRQSDLMVELIKKLKPQVVI+G+ +EAVTSSAF HLL+VTRE+GSRLFL
Sbjct: 508 SKDVITVIEAPRQSDLMVELIKKLKPQVVITGMAHYEAVTSSAFAHLLEVTREIGSRLFL 567
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLPSSNGVLKYLAG LPSHAA++CGLVKNQVY+DLEVAF+ISEEEAI KA
Sbjct: 568 DISDHFELSSLPSSNGVLKYLAGTSLPSHAAIVCGLVKNQVYADLEVAFVISEEEAILKA 627
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVEVLEG T I ++YYGCLFHELLAFQLA RH ER+ EKAKS ++IGFS SAIS
Sbjct: 628 LSKTVEVLEGNTTPIREHYYGCLFHELLAFQLANRHPLVERESEKAKSDKLIGFSSSAIS 687
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VL+ +ELSI+ S LIHMDVDQSFLP S VKAAIFE FARQN++ESEIDVTP ++Q+
Sbjct: 688 VLDYSELSISGAEISTLIHMDVDQSFLPTRSPVKAAIFEGFARQNLAESEIDVTPGMKQF 747
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
IKSN+GFP D + EF+YAD +Q+LFN+L+LCCI EGGTLCFPAGSNGNYVSAA+FLKANI
Sbjct: 748 IKSNYGFPTDSSTEFVYADSTQALFNRLILCCINEGGTLCFPAGSNGNYVSAAKFLKANI 807
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
+ IPT+ GFK+T L +L+TV KPWVYISGPTINPTGLLYS+KE+E ILT C+K+G
Sbjct: 808 MIIPTDPGAGFKLTGSLLNGVLQTVNKPWVYISGPTINPTGLLYSSKEMETILTTCSKFG 867
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARVVIDT+ SGLEF+ EGWGGWDLE LSKL SS N SF VSLLGGLSLK+L+GALKFGF
Sbjct: 868 ARVVIDTSVSGLEFDTEGWGGWDLEPTLSKLNSSHNQSFCVSLLGGLSLKILSGALKFGF 927
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L LN+P LVD SFPGLSKPHSTVRYAIKKLLGL E+K+ +L +AVAE RNL+SR +R
Sbjct: 928 LALNNPLLVDTLHSFPGLSKPHSTVRYAIKKLLGLNEQKS-ELTDAVAEQSRNLQSRCQR 986
Query: 901 LKE 903
LKE
Sbjct: 987 LKE 989
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|92893696|gb|ABE91874.1| SAM (and some other nucleotide) binding motif [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1495 bits (3871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 714/903 (79%), Positives = 799/903 (88%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PEDWSFTFYEG+NRHPDSI KD+ V+ELGCGNGWI+IAIAEKWLPSKVYGL
Sbjct: 89 MMVIPSIFLPEDWSFTFYEGINRHPDSIFKDRIVSELGCGNGWISIAIAEKWLPSKVYGL 148
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALDE GQPIYD EKKTLLDR+EFHESDLL+YCRD+ IQLERIV
Sbjct: 149 DINPRAVKISWINLYLNALDENGQPIYDEEKKTLLDRIEFHESDLLSYCRDNGIQLERIV 208
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAM+K+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 209 GCIPQILNPNPDAMTKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 268
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQGVCKRLFERRGFR+ KLWQTKI+QA+ A DTDI+ALVEIEK
Sbjct: 269 KPNGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKIIQANVLVQAGDTDIAALVEIEK 328
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGLSGD PICARTAWAYGK+GG ISHALSVYSCQL QPNQVK IF+FLKNG
Sbjct: 329 NSPHRFEFFMGLSGDQPICARTAWAYGKSGGSISHALSVYSCQLRQPNQVKVIFEFLKNG 388
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EISSSLDL FEDDSVADEKIPFLAYLAS+LK+ S+FPYEPPAGSKRFRNLIA F+K Y
Sbjct: 389 FQEISSSLDLYFEDDSVADEKIPFLAYLASILKDDSYFPYEPPAGSKRFRNLIAGFLKTY 448
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL A N+V+FPSR AIENALRLFSPRLAIVDE LTRHLP+ WLTSL ++ + +S
Sbjct: 449 HHIPLTASNIVIFPSRNAAIENALRLFSPRLAIVDEHLTRHLPRQWLTSLALENMGSIDS 508
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+ +TVIEAPRQSDLM+ELIKKLKPQVV++GI FEAVTSSAFVHLLD TR+VGSRLFL
Sbjct: 509 LDDTITVIEAPRQSDLMIELIKKLKPQVVVTGIAIFEAVTSSAFVHLLDATRDVGSRLFL 568
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLP SNGVLKYL+G+ LPSHAA+ICGLVKN+VY DLEVAF+ISEEE++F A
Sbjct: 569 DISDHFELSSLPGSNGVLKYLSGSPLPSHAAIICGLVKNKVYPDLEVAFVISEEESLFNA 628
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVE+LEG TALISQ YYGC+FHELLAFQLA R ER CE KS +MIGF++SA+S
Sbjct: 629 LSKTVELLEGNTALISQYYYGCIFHELLAFQLACRRAPSERICENVKSVDMIGFAKSAVS 688
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN+AEL+I N LIHMDVDQ FLP+PS VKAAIFESFARQNMSESEIDVT SI+++
Sbjct: 689 VLNNAELAIDGVDNGSLIHMDVDQIFLPVPSPVKAAIFESFARQNMSESEIDVTTSIKKF 748
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+KSN+GFP D + EFIYAD S++LFNKLVLCCI EGGTLCFPAGSNGNYVS+A FLKA+I
Sbjct: 749 VKSNYGFPTDTSTEFIYADNSKALFNKLVLCCIKEGGTLCFPAGSNGNYVSSATFLKADI 808
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
V +PT++ VGFK TEKTL +L TVK PWVYISGPTINPTGL+YSNKEI IL CA++G
Sbjct: 809 VTVPTDASVGFKFTEKTLTGVLGTVKNPWVYISGPTINPTGLVYSNKEIGEILITCARFG 868
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+ SGLEF+ +GWGGWDL CLSKL SS SF+VSLLGGLSLKML G L+FGF
Sbjct: 869 ARVIIDTSSSGLEFDSKGWGGWDLGECLSKLNSSFKPSFSVSLLGGLSLKMLNGVLRFGF 928
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L+LN LVD F S+PGLSKPHSTV+YA KKLL LRE+++ L +A+ EH + L SRSK
Sbjct: 929 LILNQSGLVDTFYSYPGLSKPHSTVKYAAKKLLELREQESSILSDAIVEHTQILRSRSKC 988
Query: 901 LKE 903
LKE
Sbjct: 989 LKE 991
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478096|ref|XP_004155222.1| PREDICTED: methionine S-methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1494 bits (3867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 717/903 (79%), Positives = 802/903 (88%), Gaps = 8/903 (0%)
Query: 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLD 61
MVIPSIF+PEDWSFTF+EGLNRHP SI KD+TVAELGCGNGWI+IAIA+KWLP KVYGLD
Sbjct: 90 MVIPSIFVPEDWSFTFFEGLNRHPASIFKDRTVAELGCGNGWISIAIADKWLPLKVYGLD 149
Query: 62 INPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVG 121
INPRA+++SWINLYLNALDEKGQPI+D EKKTLLDRVEFHESDLLAYCRD+DIQLERIVG
Sbjct: 150 INPRAVKVSWINLYLNALDEKGQPIFDGEKKTLLDRVEFHESDLLAYCRDNDIQLERIVG 209
Query: 122 CIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIK 181
CIPQILNPNPDAMS++ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VIK
Sbjct: 210 CIPQILNPNPDAMSRMITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK 269
Query: 182 PSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKN 241
P GIMIFNMGGRPGQGVCKRLFERRGFR+ KLWQTKILQA+ DTDISALVEIEKN
Sbjct: 270 PMGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKILQAA------DTDISALVEIEKN 323
Query: 242 SPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNGF 301
SPHRFEFFMGLSGD PICARTAWAYGKAGGRISHALSVYSCQL QPNQVK IF FLK+GF
Sbjct: 324 SPHRFEFFMGLSGDQPICARTAWAYGKAGGRISHALSVYSCQLLQPNQVKTIFDFLKSGF 383
Query: 302 HEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYH 361
EISSSLDLSF+DDSVADEKIPFLAYLAS+LK+ ++FPYEPPAGS RFRNLIA FMK YH
Sbjct: 384 QEISSSLDLSFQDDSVADEKIPFLAYLASILKDSAYFPYEPPAGSLRFRNLIAGFMKTYH 443
Query: 362 HIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENSS 421
H+P++A NVV+FPSRAVAIENALRLFSPRLAIVDE LTRHLP+ WLTSL I + +
Sbjct: 444 HVPVSAGNVVIFPSRAVAIENALRLFSPRLAIVDEHLTRHLPRQWLTSLNID-SGVNGAG 502
Query: 422 EHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFLD 481
+ LTVIEAP QSDLM+ELIKKLKPQVV++G+ FEAVTSSAFVHLLDVTRE+GSRLFLD
Sbjct: 503 DDVLTVIEAPSQSDLMMELIKKLKPQVVVTGMAHFEAVTSSAFVHLLDVTREIGSRLFLD 562
Query: 482 ISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKAL 541
ISD+FELSSLPSSNGVLKYLAGN LPSHAA++CGLVKNQVY+DLEVAF+ISEEEAIFKAL
Sbjct: 563 ISDNFELSSLPSSNGVLKYLAGNSLPSHAAIVCGLVKNQVYTDLEVAFVISEEEAIFKAL 622
Query: 542 SKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEK-AKSTEMIGFSRSAIS 600
SKTVE+LEG TA ISQ YYGCLFHELLAFQLA+RH +R+C+K A S E+IGFS SAIS
Sbjct: 623 SKTVELLEGKTAPISQYYYGCLFHELLAFQLADRHLPAQRECDKSASSREIIGFSSSAIS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN+AELSI +T NS LIHMDVD+ FLP P VKAAIFESF+RQNMSESEIDVT S++Q+
Sbjct: 683 VLNNAELSIDQTDNSSLIHMDVDEIFLPTPISVKAAIFESFSRQNMSESEIDVTTSVKQF 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+KSN+GFPI+ N++FIYAD + +LFNK+VLCCI EGGT+ FP G+NGNYV +A+FLKA +
Sbjct: 743 VKSNYGFPIENNSDFIYADSALTLFNKMVLCCIQEGGTIYFPVGTNGNYVHSAKFLKAKV 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPT SE GFK+TE L +L VK WVYISGPTINPTGL+Y KEIEN+LT C+K+G
Sbjct: 803 VNIPTRSEDGFKLTENALNQVLNNVKNAWVYISGPTINPTGLIYDQKEIENLLTACSKFG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+FSGLEF+YE W GW+LEG LS+L S N SF+V LLGGLS MLT ALKFGF
Sbjct: 863 ARVIIDTSFSGLEFDYESWSGWNLEGVLSRLCQSNNPSFSVCLLGGLSPMMLTDALKFGF 922
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVLN P L++ F SF GLS+PHSTV+YAIKKLLGLR RK+ D+ +AV I++L SRSKR
Sbjct: 923 LVLNQPPLIELFHSFSGLSRPHSTVKYAIKKLLGLRVRKSGDMWDAVTRQIKDLRSRSKR 982
Query: 901 LKE 903
LKE
Sbjct: 983 LKE 985
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357445181|ref|XP_003592868.1| Methionine S-methyltransferase [Medicago truncatula] gi|355481916|gb|AES63119.1| Methionine S-methyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1490 bits (3858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 713/903 (78%), Positives = 797/903 (88%), Gaps = 6/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PEDWSFTFYEG+NRHPDSI KD+ V+ELGCGNGWI+IAIAEKWLPSKVYGL
Sbjct: 89 MMVIPSIFLPEDWSFTFYEGINRHPDSIFKDRIVSELGCGNGWISIAIAEKWLPSKVYGL 148
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALDE GQPIYD EKKTLLDR+EFHESDLL+YCRD+ IQLERIV
Sbjct: 149 DINPRAVKISWINLYLNALDENGQPIYDEEKKTLLDRIEFHESDLLSYCRDNGIQLERIV 208
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAM+K+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 209 GCIPQILNPNPDAMTKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 268
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQGVCKRLFERRGFR+ KLWQTKI+QA DTDI+ALVEIEK
Sbjct: 269 KPNGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKIIQAG------DTDIAALVEIEK 322
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGLSGD PICARTAWAYGK+GG ISHALSVYSCQL QPNQVK IF+FLKNG
Sbjct: 323 NSPHRFEFFMGLSGDQPICARTAWAYGKSGGSISHALSVYSCQLRQPNQVKVIFEFLKNG 382
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EISSSLDL FEDDSVADEKIPFLAYLAS+LK+ S+FPYEPPAGSKRFRNLIA F+K Y
Sbjct: 383 FQEISSSLDLYFEDDSVADEKIPFLAYLASILKDDSYFPYEPPAGSKRFRNLIAGFLKTY 442
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL A N+V+FPSR AIENALRLFSPRLAIVDE LTRHLP+ WLTSL ++ + +S
Sbjct: 443 HHIPLTASNIVIFPSRNAAIENALRLFSPRLAIVDEHLTRHLPRQWLTSLALENMGSIDS 502
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+ +TVIEAPRQSDLM+ELIKKLKPQVV++GI FEAVTSSAFVHLLD TR+VGSRLFL
Sbjct: 503 LDDTITVIEAPRQSDLMIELIKKLKPQVVVTGIAIFEAVTSSAFVHLLDATRDVGSRLFL 562
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLP SNGVLKYL+G+ LPSHAA+ICGLVKN+VY DLEVAF+ISEEE++F A
Sbjct: 563 DISDHFELSSLPGSNGVLKYLSGSPLPSHAAIICGLVKNKVYPDLEVAFVISEEESLFNA 622
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVE+LEG TALISQ YYGC+FHELLAFQLA R ER CE KS +MIGF++SA+S
Sbjct: 623 LSKTVELLEGNTALISQYYYGCIFHELLAFQLACRRAPSERICENVKSVDMIGFAKSAVS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN+AEL+I N LIHMDVDQ FLP+PS VKAAIFESFARQNMSESEIDVT SI+++
Sbjct: 683 VLNNAELAIDGVDNGSLIHMDVDQIFLPVPSPVKAAIFESFARQNMSESEIDVTTSIKKF 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+KSN+GFP D + EFIYAD S++LFNKLVLCCI EGGTLCFPAGSNGNYVS+A FLKA+I
Sbjct: 743 VKSNYGFPTDTSTEFIYADNSKALFNKLVLCCIKEGGTLCFPAGSNGNYVSSATFLKADI 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
V +PT++ VGFK TEKTL +L TVK PWVYISGPTINPTGL+YSNKEI IL CA++G
Sbjct: 803 VTVPTDASVGFKFTEKTLTGVLGTVKNPWVYISGPTINPTGLVYSNKEIGEILITCARFG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+ SGLEF+ +GWGGWDL CLSKL SS SF+VSLLGGLSLKML G L+FGF
Sbjct: 863 ARVIIDTSSSGLEFDSKGWGGWDLGECLSKLNSSFKPSFSVSLLGGLSLKMLNGVLRFGF 922
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L+LN LVD F S+PGLSKPHSTV+YA KKLL LRE+++ L +A+ EH + L SRSK
Sbjct: 923 LILNQSGLVDTFYSYPGLSKPHSTVKYAAKKLLELREQESSILSDAIVEHTQILRSRSKC 982
Query: 901 LKE 903
LKE
Sbjct: 983 LKE 985
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541838|ref|XP_003539379.1| PREDICTED: methionine S-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1477 bits (3824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 706/903 (78%), Positives = 788/903 (87%), Gaps = 6/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PEDWSFTFYEG+NRHPDSI K++TVAELGCGNGWI+IAIAEKWLPSKVYGL
Sbjct: 87 MMVIPSIFLPEDWSFTFYEGINRHPDSIFKERTVAELGCGNGWISIAIAEKWLPSKVYGL 146
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA+++SWINLYLNALDE GQ IYD EKKTLLDRVEFHESDLL+YCR+ DIQLERIV
Sbjct: 147 DINPRAVKVSWINLYLNALDENGQLIYDEEKKTLLDRVEFHESDLLSYCREKDIQLERIV 206
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFL+SLSNYC+LQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 207 GCIPQILNPNPDAMSKMITENASEEFLHSLSNYCSLQGFVEDQFGLGLIARAVEEGIAVI 266
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQGVCKRLFERRGFR+ KLWQTKI+QA DTDI+ALVEIEK
Sbjct: 267 KPTGIMIFNMGGRPGQGVCKRLFERRGFRITKLWQTKIIQAG------DTDIAALVEIEK 320
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGLSGD PICARTAWAYGK+GG I+HALSVYSCQL PNQVK IF FLK+G
Sbjct: 321 NSPHRFEFFMGLSGDQPICARTAWAYGKSGGSITHALSVYSCQLRHPNQVKVIFDFLKHG 380
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EISSSLDLSFEDDSVADEKIPFLAYLAS LK S FPYEPPAGSK FRNLIA F+K Y
Sbjct: 381 FQEISSSLDLSFEDDSVADEKIPFLAYLASRLKNNSDFPYEPPAGSKHFRNLIAGFLKTY 440
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL +DNVV+FPSR AIENALRLFSPRLA+VDE LTRHLP+ WLTS ++ T +S
Sbjct: 441 HHIPLTSDNVVIFPSRTAAIENALRLFSPRLAVVDEHLTRHLPRQWLTSSALESVGTIDS 500
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+ + VIEAPRQSDLMVELIKKLKP+VV++GI FEAVTSSAFVHLLD TR++GSRLFL
Sbjct: 501 LDDAMMVIEAPRQSDLMVELIKKLKPKVVVTGIAHFEAVTSSAFVHLLDATRDIGSRLFL 560
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLP SNGVLKYL+G LPSHAA+ICGLVKN+VY DLEVAF+ISEEE++F A
Sbjct: 561 DISDHFELSSLPGSNGVLKYLSGTRLPSHAAIICGLVKNKVYPDLEVAFVISEEESLFNA 620
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVE+LE TALISQ YYGC+FHELLAFQLA RH +R+CE KS MIGF+RSA S
Sbjct: 621 LSKTVELLEDNTALISQYYYGCIFHELLAFQLAGRHAPAKRNCENVKSVGMIGFARSASS 680
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
VLN+AELSI N LIHMDVDQ FLP+PS VKAAIFESFARQNMSESE DVT SI+ +
Sbjct: 681 VLNTAELSIDGVENESLIHMDVDQIFLPVPSPVKAAIFESFARQNMSESETDVTASIKGF 740
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+KSN+GFP D + EFIYAD S++LFNKLVLCCI EGGTLCFPAGSNGNYVS+ARFLKA+I
Sbjct: 741 VKSNYGFPTDSSTEFIYADNSKALFNKLVLCCIKEGGTLCFPAGSNGNYVSSARFLKADI 800
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
V +PT VGFK TEKTL +L TVK PWVYISGPT+NPTGL+YSN E+ IL+ CA++G
Sbjct: 801 VTVPTNVNVGFKFTEKTLTGVLGTVKNPWVYISGPTVNPTGLIYSNNEMVEILSTCARFG 860
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDTA SGLEF+ EGWGGWD+EGCLSKL SS SF V+LLGGLSLKML G L+FGF
Sbjct: 861 ARVIIDTASSGLEFDCEGWGGWDIEGCLSKLNSSIKPSFCVTLLGGLSLKMLNGVLRFGF 920
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L+LN P LVD F S+PGLSKPH+TVRYA KKLL L+E+K +L +A+ E + L++RS+
Sbjct: 921 LILNQPVLVDTFYSYPGLSKPHTTVRYATKKLLELKEQKPSNLSDAIVEQTQILKTRSRC 980
Query: 901 LKE 903
LKE
Sbjct: 981 LKE 983
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559151|ref|XP_003547864.1| PREDICTED: methionine S-methyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1472 bits (3811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/904 (77%), Positives = 785/904 (86%), Gaps = 7/904 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIF+PEDWSFTFYEG+NRHPDSI K++TVAELGCGNGWI+IA+AEKWLP KVYGL
Sbjct: 87 MMVIPSIFLPEDWSFTFYEGINRHPDSIFKERTVAELGCGNGWISIAMAEKWLPYKVYGL 146
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA+++SWINLYLNALDE GQ IYD E KTLLDRVEFHESDLL+YCR+ DIQLERIV
Sbjct: 147 DINPRAVKVSWINLYLNALDENGQLIYDEENKTLLDRVEFHESDLLSYCREKDIQLERIV 206
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNPDAMSK+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 207 GCIPQILNPNPDAMSKMITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGIAVI 266
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQ VCKRLFERRGFR+ KLWQTKI+QA DTDI ALVEIEK
Sbjct: 267 KPTGIMIFNMGGRPGQAVCKRLFERRGFRITKLWQTKIIQAG------DTDIEALVEIEK 320
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NSPHRFEFFMGLSGD PICARTAW YGK+GG ISHALSVYSCQL PNQVK IF FLK+G
Sbjct: 321 NSPHRFEFFMGLSGDQPICARTAWTYGKSGGSISHALSVYSCQLRHPNQVKAIFDFLKHG 380
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EI SSLDLSFEDDSVADEKIPFLAYLAS LK S+FPYEPPAGSK FRNLIA F+K Y
Sbjct: 381 FQEIGSSLDLSFEDDSVADEKIPFLAYLASRLKNNSYFPYEPPAGSKHFRNLIAGFLKTY 440
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTI-KGTDTEN 419
HHIPL +DNVV+FPSR AIE+ALRLFSPRLA+VDE LTRHLP+ WLTS T+ K T +
Sbjct: 441 HHIPLTSDNVVIFPSRTAAIEHALRLFSPRLAVVDEHLTRHLPRQWLTSSTLEKNAGTID 500
Query: 420 SSEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLF 479
S + + VIEAPRQSDLM+ELIKKLKP+VV++GI FEAVTSSAFVHLLD TR++GSRLF
Sbjct: 501 SLDDTMMVIEAPRQSDLMIELIKKLKPKVVVTGIAHFEAVTSSAFVHLLDTTRDIGSRLF 560
Query: 480 LDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFK 539
LDISDHFELSSLP SNGVLKYL+G LPSHAA+ICGLVKN+VY DLEVAF+ISEEE++
Sbjct: 561 LDISDHFELSSLPGSNGVLKYLSGTPLPSHAAIICGLVKNKVYPDLEVAFVISEEESLLN 620
Query: 540 ALSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAI 599
ALSKTVE+LEG TALISQ YYGC+FHELLAFQLA+RH +R+CE KS +MIGF+RSA
Sbjct: 621 ALSKTVELLEGNTALISQYYYGCIFHELLAFQLADRHAPAKRNCENVKSVDMIGFARSAT 680
Query: 600 SVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQ 659
SVL++AELSI N LIHMDVDQ FLP+PS VKAAIFESFARQNMSESE DVT SI+
Sbjct: 681 SVLSNAELSIDGVENESLIHMDVDQIFLPVPSPVKAAIFESFARQNMSESETDVTASIKG 740
Query: 660 YIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKAN 719
++KSN+GFP D + EFIYAD S++LFNKLVLCCI EGGTLCFPAGSNGNYVS+ARFLKA+
Sbjct: 741 FVKSNYGFPTDSSTEFIYADNSKALFNKLVLCCIKEGGTLCFPAGSNGNYVSSARFLKAD 800
Query: 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY 779
IV +PT+ VGFK TEKTL IL TVK PWVYISGPT+NPTGL+YSN E+ IL+ CA++
Sbjct: 801 IVTVPTDVNVGFKFTEKTLTGILGTVKNPWVYISGPTVNPTGLIYSNNEMVEILSTCARF 860
Query: 780 GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839
GARV+IDTA SGLEF+ EGWGGWD+EGCLSKL SS SF VSLLGGLSLKML G L+FG
Sbjct: 861 GARVIIDTASSGLEFDCEGWGGWDIEGCLSKLNSSIKPSFCVSLLGGLSLKMLNGVLRFG 920
Query: 840 FLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899
FL+LN P LVD F S+PGLSKPH+T RYA KKLL RE+K L +A+ EH + L++RSK
Sbjct: 921 FLILNQPILVDTFYSYPGLSKPHTTARYATKKLLERREQKPSSLSDAIVEHTQILKTRSK 980
Query: 900 RLKE 903
LKE
Sbjct: 981 CLKE 984
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 903 | ||||||
| TAIR|locus:2155466 | 1071 | MMT "methionine S-methyltransf | 0.983 | 0.829 | 0.738 | 0.0 | |
| UNIPROTKB|Q81MM2 | 387 | BAS3918 "Aminotransferase, cla | 0.191 | 0.447 | 0.277 | 1.6e-05 | |
| TIGR_CMR|BA_4225 | 387 | BA_4225 "aminotransferase, cla | 0.191 | 0.447 | 0.277 | 1.6e-05 |
| TAIR|locus:2155466 MMT "methionine S-methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3480 (1230.1 bits), Expect = 0., P = 0.
Identities = 667/903 (73%), Positives = 776/903 (85%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MMVIPSIFIPEDWSFTFYEGLNRHPD+I KDKTV+ELGCGNGWI+IAIA KWLPSKVYGL
Sbjct: 85 MMVIPSIFIPEDWSFTFYEGLNRHPDTIFKDKTVSELGCGNGWISIAIAAKWLPSKVYGL 144
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++ISWINLYLNALD+ G+P+YD EKKTLLDRVEF+ESDLL YCRD+ IQLERIV
Sbjct: 145 DINPRAVKISWINLYLNALDDNGEPVYDEEKKTLLDRVEFYESDLLGYCRDNKIQLERIV 204
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNP+AMSK+ITENASEEFL+SLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 205 GCIPQILNPNPEAMSKLITENASEEFLHSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 264
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP+GIMIFNMGGRPGQGVC+RLFERRG RV ++WQTKILQA+ DTDISALVEIE+
Sbjct: 265 KPAGIMIFNMGGRPGQGVCRRLFERRGVRVTQMWQTKILQAA------DTDISALVEIER 318
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
+SPHRFEFFMGLSGD PICARTAWAYGKAGGRISHALSVYSCQ+ QPN VK IF FLKNG
Sbjct: 319 SSPHRFEFFMGLSGDQPICARTAWAYGKAGGRISHALSVYSCQIRQPNLVKIIFDFLKNG 378
Query: 301 FHEIXXXXXXXXXXXXVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
F EI VADEKIPFLAYLASVLK S+FP+EPPAGSKRF +LIA FM+ Y
Sbjct: 379 FQEISNSLDLSFEDETVADEKIPFLAYLASVLKNSSYFPFEPPAGSKRFCSLIAGFMRTY 438
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
H IP+N DN+VVFPSRAVAIE+A RLFSPRLAIVDE LTR LP+ WLTSL I+ T + S
Sbjct: 439 HRIPINQDNIVVFPSRAVAIESAFRLFSPRLAIVDEHLTRQLPRSWLTSLAIEDTSMDKS 498
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
+ ++TVIE+P QSDLM+ELIKKLKPQVV++G+ FE +TSS+F+HLL+VT+E+G RLFL
Sbjct: 499 DD-QITVIESPHQSDLMIELIKKLKPQVVVTGMAPFEVITSSSFLHLLEVTKEIGCRLFL 557
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDHFELSSLP+SNGVLKYLA N LPSHAA+ICGLVKN+VYSDLEVAF+I+E +AI KA
Sbjct: 558 DISDHFELSSLPASNGVLKYLAENQLPSHAAIICGLVKNKVYSDLEVAFVITEVDAIAKA 617
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKTVEVLEG TA+ISQ YYGCLFHELLAFQLA+RH ER+ EKAKS E+IGFS SA+S
Sbjct: 618 LSKTVEVLEGHTAIISQYYYGCLFHELLAFQLADRHAPAERESEKAKSEEIIGFSSSAVS 677
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
+L AELS+TE + LIHMDVDQSFL IP VKAAIFESF RQN+SE+E+D+ PSI+Q+
Sbjct: 678 ILKDAELSVTEIDETSLIHMDVDQSFLQIPQSVKAAIFESFVRQNISEAEVDINPSIKQF 737
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
+ SN+GFP + F+YAD S +LFNKLV+CC EGGTLC PAG+NGNYV+AA+FLKAN+
Sbjct: 738 VWSNYGFPTKSSTGFVYADGSLALFNKLVICCAQEGGTLCLPAGTNGNYVAAAKFLKANV 797
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
VNIPTES GFK+TEKTL LE+VKKPWV ISGPT++PTGL+YSN+E++ +L+ CAK+G
Sbjct: 798 VNIPTESSDGFKLTEKTLTKALESVKKPWVCISGPTVSPTGLVYSNEEMDILLSTCAKFG 857
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
A+V+IDT+FSGLE++ W DL+ LSK+ +SS +VSLLG LSL +L+GA+K GF
Sbjct: 858 AKVIIDTSFSGLEYSATSW---DLKNALSKM----DSSLSVSLLGCLSLNLLSGAIKLGF 910
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
LVL+ L+DAF + PGLSKPHSTV+YA KK+L L+E KA D ++AV+E I+ LE RS+R
Sbjct: 911 LVLDQ-SLIDAFHTLPGLSKPHSTVKYAAKKMLALKEEKASDFLDAVSETIKTLEGRSRR 969
Query: 901 LKE 903
LKE
Sbjct: 970 LKE 972
|
|
| UNIPROTKB|Q81MM2 BAS3918 "Aminotransferase, classes I and II" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 51/184 (27%), Positives = 82/184 (44%)
Query: 617 LIHMDVDQSFLPIPSLVKAA----IFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDIN 672
LI + + QS P PSLVK A I E++ + +++ + ++K N+
Sbjct: 30 LISLTIGQSDFPTPSLVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDNYDLHYSPE 89
Query: 673 AEFIYA-DCSQSLFNKLVLCCILEGGT-LCFPAGSNGNYVSAARFLKANIVNIPTESEVG 730
E I S+++ + ILE GT + PA Y R A + I E G
Sbjct: 90 TETIVTIGASEAI--DVAFRTILEPGTEVILPAPIYPGYEPIIRLCGATPIFIDVR-ETG 146
Query: 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS 790
F++T + L + T K V + P+ NPTG+ S KE+++I V V+ D +S
Sbjct: 147 FRLTAEALENAI-TEKTRCVVLPYPS-NPTGVTLSKKELQDIADVLKDKNIFVLSDEIYS 204
Query: 791 GLEF 794
L +
Sbjct: 205 ELVY 208
|
|
| TIGR_CMR|BA_4225 BA_4225 "aminotransferase, classes I and II" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 51/184 (27%), Positives = 82/184 (44%)
Query: 617 LIHMDVDQSFLPIPSLVKAA----IFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDIN 672
LI + + QS P PSLVK A I E++ + +++ + ++K N+
Sbjct: 30 LISLTIGQSDFPTPSLVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDNYDLHYSPE 89
Query: 673 AEFIYA-DCSQSLFNKLVLCCILEGGT-LCFPAGSNGNYVSAARFLKANIVNIPTESEVG 730
E I S+++ + ILE GT + PA Y R A + I E G
Sbjct: 90 TETIVTIGASEAI--DVAFRTILEPGTEVILPAPIYPGYEPIIRLCGATPIFIDVR-ETG 146
Query: 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS 790
F++T + L + T K V + P+ NPTG+ S KE+++I V V+ D +S
Sbjct: 147 FRLTAEALENAI-TEKTRCVVLPYPS-NPTGVTLSKKELQDIADVLKDKNIFVLSDEIYS 204
Query: 791 GLEF 794
L +
Sbjct: 205 ELVY 208
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 903 891 0.00087 122 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 626 (67 KB)
Total size of DFA: 420 KB (2203 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 72.92u 0.09s 73.01t Elapsed: 00:00:04
Total cpu time: 72.92u 0.09s 73.01t Elapsed: 00:00:04
Start: Thu May 9 21:36:31 2013 End: Thu May 9 21:36:35 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9MBC2 | MMT1_HORVU | 2, ., 1, ., 1, ., 1, 2 | 0.6970 | 0.9867 | 0.8189 | N/A | no |
| Q8W519 | MMT1_MAIZE | 2, ., 1, ., 1, ., 1, 2 | 0.6825 | 0.9900 | 0.8194 | N/A | no |
| Q9SWR3 | MMT1_WOLBI | 2, ., 1, ., 1, ., 1, 2 | 0.7317 | 0.9900 | 0.8216 | N/A | no |
| Q9LTB2 | MMT1_ARATH | 2, ., 1, ., 1, ., 1, 2 | 0.7486 | 0.9833 | 0.8291 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00035361001 | SubName- Full=Chromosome undetermined scaffold_77, whole genome shotgun sequence; (1090 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00038829001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (807 aa) | • | 0.899 | ||||||||
| GSVIVG00018515001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (270 aa) | • | 0.899 | ||||||||
| GSVIVG00017439001 | SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (767 aa) | • | 0.899 | ||||||||
| GSVIVG00008913001 | SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (217 aa) | • | 0.899 | ||||||||
| GSVIVG00003836001 | SubName- Full=Chromosome chr8 scaffold_150, whole genome shotgun sequence; (765 aa) | • | 0.899 | ||||||||
| GSVIVG00000520001 | SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 903 | |||
| PLN02672 | 1082 | PLN02672, PLN02672, methionine S-methyltransferase | 0.0 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 8e-10 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-09 | |
| COG0436 | 393 | COG0436, COG0436, Aspartate/tyrosine/aromatic amin | 2e-08 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 1e-07 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 2e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-07 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 6e-07 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-07 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 2e-06 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 2e-06 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 4e-06 | |
| PRK07683 | 387 | PRK07683, PRK07683, aminotransferase A; Validated | 6e-06 | |
| TIGR00406 | 288 | TIGR00406, prmA, ribosomal protein L11 methyltrans | 3e-05 | |
| PRK05764 | 393 | PRK05764, PRK05764, aspartate aminotransferase; Pr | 4e-05 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-05 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 5e-05 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 2e-04 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-04 | |
| PRK07309 | 391 | PRK07309, PRK07309, aromatic amino acid aminotrans | 3e-04 | |
| PRK07568 | 397 | PRK07568, PRK07568, aspartate aminotransferase; Pr | 5e-04 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 5e-04 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 6e-04 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 6e-04 | |
| PRK06358 | 354 | PRK06358, PRK06358, threonine-phosphate decarboxyl | 6e-04 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 0.001 | |
| COG1167 | 459 | COG1167, ARO8, Transcriptional regulators containi | 0.001 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 0.001 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.002 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 0.002 | |
| PRK08363 | 398 | PRK08363, PRK08363, alanine aminotransferase; Vali | 0.004 |
| >gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase | Back alignment and domain information |
|---|
Score = 1727 bits (4474), Expect = 0.0
Identities = 695/903 (76%), Positives = 785/903 (86%), Gaps = 7/903 (0%)
Query: 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGL 60
MM IPSIFIPEDWSFTFYEGLNRHPDSI +DKTVAELGCGNGWI+IAIAEKWLPSKVYGL
Sbjct: 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGL 148
Query: 61 DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIV 120
DINPRA++++WINLYLNALD+ G P+YD E KTLLDRVEF+ESDLL YCRD++I+L+RIV
Sbjct: 149 DINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIV 208
Query: 121 GCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180
GCIPQILNPNP+AMSK++TENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI VI
Sbjct: 209 GCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVI 268
Query: 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240
KP GIMIFNMGGRPGQ VC+RLFERRGFR+ KLWQTKI QA+ DTDISALVEIEK
Sbjct: 269 KPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQTKINQAA------DTDISALVEIEK 322
Query: 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300
NS HRFEFFMGL GD PICARTAWAYGKAGGRISHALSVYSCQL QPNQVK IFKFLKNG
Sbjct: 323 NSRHRFEFFMGLVGDQPICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKTIFKFLKNG 382
Query: 301 FHEISSSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKY 360
FHE+S SLDLSFED+SVADEKIPFLAYLAS LK S+FP EPPAGSKRFRNLIA FM+ Y
Sbjct: 383 FHEVSGSLDLSFEDESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIY 442
Query: 361 HHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENS 420
HHIPL DNVVVFPSRAVAIENALRLFSPRLAIVDE LTR LPK WLTSL I+ +++
Sbjct: 443 HHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTRWLPKKWLTSLAIENATSDSK 502
Query: 421 SEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480
S+ +TVIEAPRQSDL++ELIKKLKPQVV++G+ DFE TS+AF HLL+VT E+G+RLFL
Sbjct: 503 SDDVITVIEAPRQSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFL 562
Query: 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKA 540
DISDH ELSSLP SNGVLKYLAG+ LPSHAA+ICGLVKNQVYSDLEVAF+ISE EA+ KA
Sbjct: 563 DISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKA 622
Query: 541 LSKTVEVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAIS 600
LSKT EVLEG TA+ISQ YYGCLFHELLAFQLA+RHT +ER E+ +S++ IGFS SA S
Sbjct: 623 LSKTGEVLEGRTAIISQFYYGCLFHELLAFQLADRHTPQERLPEEEESSKFIGFSSSARS 682
Query: 601 VLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQY 660
L AELS++ + S LIHMDVD+SFLP+PS VKA+IFESF RQN+SESE D PSI Q+
Sbjct: 683 ALKEAELSVSGSQESSLIHMDVDESFLPVPSAVKASIFESFVRQNISESETDPRPSILQF 742
Query: 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720
IKSN+GFP D EF+Y D S +LFNKLVLCC+ EGGTLCFPAGSNG YVSAA+FLKAN
Sbjct: 743 IKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANF 802
Query: 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780
IPT+S GFK+T KTL + LETVKKPWVYISGPTINPTGLLYSN EIE IL+VCAKYG
Sbjct: 803 RRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYG 862
Query: 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840
ARV+IDT+FSGLE++ GWGGWDL+ LS+L SS N SF V+LLGGLS ++L+G +FGF
Sbjct: 863 ARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSS-NPSFAVALLGGLSTELLSGGHEFGF 921
Query: 841 LVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900
L LN L+DAF S PGLS+PHST++Y IKKLLGL+ +K+ DL++ VAE + L+SR++R
Sbjct: 922 LALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAER 981
Query: 901 LKE 903
LKE
Sbjct: 982 LKE 984
|
Length = 1082 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 8e-10
Identities = 57/272 (20%), Positives = 110/272 (40%), Gaps = 23/272 (8%)
Query: 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFG--FPIDINAEFIY--ADCS 681
F P P +++A + + P +++ I G +D+ E I
Sbjct: 10 FPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQ 69
Query: 682 QSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741
++L L+ + G + P + Y +AAR A +V +P + E GF + + L+
Sbjct: 70 EALSL-LLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLE-LLEA 127
Query: 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801
+T K +Y++ P NPTG + S +E+E + + K+G ++ D A++ L +
Sbjct: 128 AKTPKTKLLYLNNPN-NPTGAVLSEEELEELAELAKKHGILIISDEAYAELVY------- 179
Query: 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLK--MLTGALKFGFLVLNHPQLVDAFSSFPGLS 859
+G + ++ V +L S K L G L+ G+L+ +L++ +
Sbjct: 180 ---DGEPPPALALLDAYERVIVLRSFS-KTFGLPG-LRIGYLIAPPEELLERLKKLLPYT 234
Query: 860 K--PHSTVRYAIKKLLGLRERKARDLMNAVAE 889
P + + A L E +L
Sbjct: 235 TSGPSTLSQAAAAAALDDGEEHLEELRERYRR 266
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 34/176 (19%), Positives = 68/176 (38%), Gaps = 8/176 (4%)
Query: 627 LPIPSLVKAAIFESFARQNMSESEIDVTPS----IQQYIKSNFGFPIDINAEFIYADCSQ 682
+P++ KA D P + +++ + +D A ++ +
Sbjct: 16 GTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVLKLDREAAVVFGSGAG 75
Query: 683 SLFNKLVLCCILEGGTLCF-PAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741
+ L+ L G PA + +Y+ R +V P S F + L
Sbjct: 76 ANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLYSSNDFHLDFDALEAA 135
Query: 742 LE--TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN 795
L+ T V + P NPTG + + +E+E +L + ++ +++D A++G F
Sbjct: 136 LKEATEGNKVVLHTSPH-NPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFG 190
|
Length = 357 |
| >gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 21/209 (10%)
Query: 599 ISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPS-- 656
+VL A+ + +I + + + P P + A A + + E TPS
Sbjct: 12 FAVLAEAKAAAELKGKEDVIDLSIGEPDFPTPEHIIEA-----AIEALEEGGTHYTPSAG 66
Query: 657 -------IQQYIKSNFGFPIDINAE-FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN 708
I + K +G +D E + A ++LF L + G + P +
Sbjct: 67 IPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFL-AFLALLNPGDEVLIPDPGYPS 125
Query: 709 YVSAARFLKANIVNIPT-ESEVGFKMTEKTLVT-ILETVKKPWVYISGPTINPTGLLYSN 766
Y +A + V +P E E GFK + L I K + ++ P NPTG +YS
Sbjct: 126 YEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTK--AIILNSPN-NPTGAVYSK 182
Query: 767 KEIENILTVCAKYGARVVIDTAFSGLEFN 795
+E++ I+ + ++ ++ D + L ++
Sbjct: 183 EELKAIVELAREHDIIIISDEIYEELVYD 211
|
Length = 393 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
DK + +LG G+G I IA+A++ ++V +DI+P A+ ++ N N
Sbjct: 109 QLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG---------- 158
Query: 89 AEKKTLLDRVEFHESDLLA 107
L RV +SDL
Sbjct: 159 ------LVRVLVVQSDLFE 171
|
Length = 280 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 16/77 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
K V E+G G+G + I A+ KV G+DINP A+ + N LN + G
Sbjct: 23 KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNG------ 74
Query: 90 EKKTLLDRVEFHESDLL 106
VE SDL
Sbjct: 75 --------VEVIRSDLF 83
|
Length = 188 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-07
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90
V + G G+G +A A ++V G++++P A ++ L L L
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLA---------- 50
Query: 91 KKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIP 124
RV D D + ++G P
Sbjct: 51 -----PRVRVVVGDARELLELPDGSFDLVLGNPP 79
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 6e-07
Identities = 46/184 (25%), Positives = 72/184 (39%), Gaps = 39/184 (21%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
V +LG G+G I +A+A++ ++V +DI+P A+ ++ N
Sbjct: 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNA--------------- 131
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYS 149
+ LD VEF +SD L IV NP P I E
Sbjct: 132 -ARLGLDNVEFLQSDWFEPLPGGKFDL--IVS------NP-P-----YIPEADIHLLDPE 176
Query: 150 LSNY---CALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQG-VCKRLFER 205
+ + AL G + GL R + + ++KP G ++ +G QG + LFE
Sbjct: 177 VRFHEPRLALFG---GEDGLDFYRRIIAQAPRLLKPGGWLLLEIG--YDQGEAVRALFEA 231
Query: 206 RGFR 209
GF
Sbjct: 232 AGFA 235
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-07
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 27/112 (24%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
V ++GCG G + I +A + ++V G+D++P + ++ N
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENA--------------- 45
Query: 90 EKKTLLDRVEFHESDL-----------LAYCRDHDIQLERIVGCIPQILNPN 130
K L R+ F + D + L ++ + +L P
Sbjct: 46 -KLALGPRITFVQGDAPDALDLLEGFDAVFIGGGGGDLLELLDALASLLKPG 96
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 16/78 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
+ V +LG G+G I +A+A++ ++V +DI+P A+ ++ N
Sbjct: 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNA--------------- 152
Query: 90 EKKTLLDRVEFHESDLLA 107
K L RVEF + D
Sbjct: 153 -KHGLGARVEFLQGDWFE 169
|
Length = 275 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
V +LGCG G + A+A++ +V +DIN RA+ + NL N
Sbjct: 31 LGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANG----------- 79
Query: 90 EKKTLLDRVEFHESDLLA 107
L+ E SDL +
Sbjct: 80 -----LENGEVFWSDLYS 92
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 29/120 (24%)
Query: 26 DSIL--------KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN 77
D+IL K + +LG GNG + + +A++ +K+ G++I A ++ N+ LN
Sbjct: 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN 91
Query: 78 ALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGC------IPQILNPNP 131
L+E R++ E+D+ + + ++ C LN NP
Sbjct: 92 PLEE---------------RIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENP 136
|
Length = 248 |
| >gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 11/187 (5%)
Query: 615 SGLIHMDVDQSFLPIPSLVKA----AIFESFARQNMSESEIDVTPSIQQYIKSNFGFPID 670
LI + + Q P PS VK AI E++ + +++ + ++K +
Sbjct: 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKDKYDLHYS 87
Query: 671 INAEFIY-ADCSQSLFNKLVLCCILEGGT-LCFPAGSNGNYVSAARFLKANIVNIPTESE 728
+E I S+++ + ILE GT + PA Y R A V I T
Sbjct: 88 PESEIIVTIGASEAI--DIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDT-RS 144
Query: 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTA 788
GF++T + L + T K V + P+ NPTG+ S +E+++I V V+ D
Sbjct: 145 TGFRLTAEALENAI-TEKTRCVVLPYPS-NPTGVTLSKEELQDIADVLKDKNIFVLSDEI 202
Query: 789 FSGLEFN 795
+S L +
Sbjct: 203 YSELVYE 209
|
Length = 387 |
| >gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
LKDK V ++GCG+G ++IA A K +KV G+DI+P A+ + N LN + ++ Q
Sbjct: 158 LKDKNVIDVGCGSGILSIA-ALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI 216
Query: 89 AEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQI---LNPNPDAMSKIITENASEE 145
++ + + + +++LA E I PQ + P + I E ++
Sbjct: 217 YLEQPIEGKADVIVANILA---------EVIKELYPQFSRLVKPGGWLILSGILETQAQS 267
Query: 146 FLYSLSN 152
+
Sbjct: 268 VCDAYEQ 274
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288 |
| >gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 4e-05
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 38/165 (23%)
Query: 629 IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688
IP L + AI R N +D PS Q I + Q+L+N
Sbjct: 70 IPEL-REAIAAKLKRDN----GLDYDPS--QVIVTTGA--------------KQALYN-A 107
Query: 689 VLCCILEGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESEVGFKMT----EKTLVTI 741
+ + G + PA +VS + V +PT E GFK+T E +
Sbjct: 108 FMALLDPGDEVIIPAPY---WVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAI--- 161
Query: 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVID 786
T K + ++ P+ NPTG +YS +E+E I V ++ V+ D
Sbjct: 162 --TPKTKALILNSPS-NPTGAVYSPEELEAIADVAVEHDIWVLSD 203
|
Length = 393 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 17/79 (21%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
V +LGCG G++T +AEK P ++V G+DI+ AI + N
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENA-------------- 48
Query: 89 AEKKTLLDRVEFHESDLLA 107
KK + VEF + D+
Sbjct: 49 --KKLGYENVEFIQGDIEE 65
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD---------- 80
V +LGCG G + + +A+K +K+ +D+N RA+ + NL N ++
Sbjct: 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLY 218
Query: 81 EKGQPIYDA 89
E + +D
Sbjct: 219 EPVEGKFDL 227
|
Length = 300 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81
+ K KTV ++GCG+G + IA A K KV G+DI+P+A+ + N LN ++
Sbjct: 160 LKKGKTVLDVGCGSGILAIAAA-KLGAKKVVGVDIDPQAVEAARENARLNGVEL 212
|
Length = 300 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 33 TVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPI-YDAEK 91
V +LGCG G + +A+A ++V G+DI+P A+ ++ L + + + DAE+
Sbjct: 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAA-AALLADNVEVLKGDAEE 58
Query: 92 KTLLDRVEFH--ESDLLAYCRDHDIQLERIVGCIPQILNPN 130
F SD + D+ R + ++L P
Sbjct: 59 LPPEADESFDVIISDPPLHHLVEDLA--RFLEEARRLLKPG 97
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 689 VLCCILE-GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF----KMTEKTLVTILE 743
L ILE G + PA + Y + A IV I T +E F +M EK ++ +
Sbjct: 107 SLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDT-TENDFVLTPEMLEKAILEQGD 165
Query: 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEG 798
+K V ++ P NPTG+ YS ++I+ + V KY V+ D +S E Y G
Sbjct: 166 KLKA--VILNYPA-NPTGVTYSREQIKALADVLKKYDIFVISDEVYS--ELTYTG 215
|
Length = 391 |
| >gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-04
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 23/101 (22%)
Query: 708 NYVSAARFLKANIVNIPTESEVGF----------KMTEKTLVTILETVKKPWVYISGPTI 757
NY A IV + T+ E GF +T KT IL IS P
Sbjct: 124 NYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTK-AIL---------ISNPG- 172
Query: 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEG 798
NPTG++Y+ +E+E + + K+ ++ D + EF Y+G
Sbjct: 173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYR--EFVYDG 211
|
Length = 397 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEK 82
+ +TV ++GCG+G + IA K KV G+DI+P A+R + N LN ++ +
Sbjct: 158 VKPGETVLDVGCGSGILAIAAL-KLGAKKVVGVDIDPVAVRAAKENAELNGVEAQ 211
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 14/65 (21%), Positives = 24/65 (36%)
Query: 323 PFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIEN 382
L LA+ Y P G R IA+++ + + + + +VV A+
Sbjct: 15 EVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSL 74
Query: 383 ALRLF 387
LR
Sbjct: 75 LLRAL 79
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 27/111 (24%)
Query: 2 MVIPSIFIP----EDWSFTFYEGL--NRHPDSILKDKTVAELGCGNGWITIAIAEKWLPS 55
V + IP E+ L IL +LG G+G I +A+A ++ +
Sbjct: 86 FVNEHVLIPRPETEELVEKALASLISQNPILHIL------DLGTGSGCIALALAYEFPNA 139
Query: 56 KVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106
+V +DI+P A+ ++ N AEK L RVEF +S+L
Sbjct: 140 EVIAVDISPDALAVAEEN---------------AEKNQLEHRVEFIQSNLF 175
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 6e-04
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 707 GNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPW--VYISGPTINPTGLLY 764
Y A + A I E F E +LE +K+ V++ P NPTG L
Sbjct: 104 AEYERALKAFDAEIEYAELTEETNFAANEI----VLEEIKEEIDLVFLCNPN-NPTGQLI 158
Query: 765 SNKEIENILTVCAKYGARVVIDTAFSGLEF 794
S +E++ IL C K ++ID AF ++F
Sbjct: 159 SKEEMKKILDKCEKRNIYLIIDEAF--MDF 186
|
Length = 354 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 36 ELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
++GCG G + A+ E + G+DI+P A+
Sbjct: 2 DIGCGTGTLLRALLEALPGLEYTGVDISPAALEA 35
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 35/152 (23%)
Query: 711 SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPW----VYISGPTI-NPTGLLYS 765
A L A ++ +P + + G LE W VY++ PT NPTG+ S
Sbjct: 194 QALEALGARVIPVPVDED-GI------DPEALEEALAQWKPKAVYVT-PTFQNPTGVTMS 245
Query: 766 NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWG-----GWDLEGCLSKLYSSTNSSFN 820
+ + +L + KY ++ D + E Y+G D G
Sbjct: 246 LERRKALLALAEKYDVLIIEDDYYG--ELRYDGPPPPPLKALDAPG-------------R 290
Query: 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852
V LG S K L L+ G++V P+L++
Sbjct: 291 VIYLGSFS-KTLAPGLRLGYVVAP-PELIEKL 320
|
Length = 459 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.001
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE-----KG 83
L KTV ++GCG+G + IA A K KV +DI+P+A+ + N LN ++ +G
Sbjct: 118 LPGKTVLDVGCGSGILAIA-AAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG 176
Query: 84 QPIYD 88
D
Sbjct: 177 DLKAD 181
|
Length = 250 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 20/78 (25%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
L+ KTV +LG G G +AI L S+V +DI+P A+ I+ N
Sbjct: 44 LEGKTVLDLGAGTG--ILAIGAALLGASRVLAVDIDPEALEIARAN-------------- 87
Query: 88 DAEKKTLLDRVEFHESDL 105
+ LL VEF +D+
Sbjct: 88 ---AEELLGDVEFVVADV 102
|
Length = 198 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 ELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73
++GCG G + A+A + ++V G+D++P + ++
Sbjct: 2 DVGCGTGLLAEALARR-GGARVTGVDLSPEMLALARKR 38
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 67/295 (22%), Positives = 107/295 (36%), Gaps = 53/295 (17%)
Query: 626 FLPIPSLVKA---AIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682
F P + +A AI E SE ++ +I + K G I + + A ++
Sbjct: 45 FQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTE 104
Query: 683 SLFNKLVLCCILEGG-TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF---------K 732
+L +L+ +L+ G + P S Y +F V T E G+ K
Sbjct: 105 AL--QLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKK 162
Query: 733 MTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGL 792
+TEKT + + P NPTG LY K ++ IL + ++ V+ D + +
Sbjct: 163 ITEKTKA----------IAVINPN-NPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLM 211
Query: 793 EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852
YEG S V ++ GLS + G++ P+
Sbjct: 212 --TYEG---------KHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVDPE----- 255
Query: 853 SSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN----LESRSKRLKE 903
L++ VR AI KL +R A + LE K+LKE
Sbjct: 256 ---GKLAE----VREAIDKLARIRLCPNTPAQFAAIAGLTGPMDYLEEYMKKLKE 303
|
Length = 398 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 903 | |||
| PLN02672 | 1082 | methionine S-methyltransferase | 100.0 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 100.0 | |
| PLN02368 | 407 | alanine transaminase | 100.0 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 100.0 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 100.0 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 100.0 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 100.0 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 100.0 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 100.0 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 100.0 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08068 | 389 | transaminase; Reviewed | 100.0 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 100.0 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 100.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 100.0 | |
| PRK09148 | 405 | aminotransferase; Validated | 100.0 | |
| PLN02187 | 462 | rooty/superroot1 | 100.0 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK06855 | 433 | aminotransferase; Validated | 100.0 | |
| PLN02656 | 409 | tyrosine transaminase | 100.0 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 100.0 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 100.0 | |
| PRK07682 | 378 | hypothetical protein; Validated | 100.0 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 100.0 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 100.0 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 100.0 | |
| PRK07337 | 388 | aminotransferase; Validated | 100.0 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK07683 | 387 | aminotransferase A; Validated | 100.0 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 100.0 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 100.0 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 100.0 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 100.0 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK07777 | 387 | aminotransferase; Validated | 100.0 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 100.0 | |
| PLN02231 | 534 | alanine transaminase | 100.0 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 100.0 | |
| PRK07324 | 373 | transaminase; Validated | 100.0 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 100.0 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 100.0 | |
| PRK08175 | 395 | aminotransferase; Validated | 100.0 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 100.0 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 100.0 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 100.0 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 100.0 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 100.0 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 100.0 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 100.0 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 100.0 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 100.0 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 100.0 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 100.0 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 100.0 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 100.0 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 100.0 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 100.0 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.98 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.98 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.98 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.97 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.97 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.97 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.97 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.97 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.97 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.97 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.97 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.97 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.97 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.97 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.96 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.96 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.92 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.91 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.91 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.88 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.88 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.88 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.87 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.87 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.86 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.86 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.86 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.86 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.85 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.85 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.84 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.84 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.84 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.83 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.83 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.83 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.83 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.83 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.82 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.82 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.81 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.81 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.79 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.79 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.79 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.79 | |
| PLN02721 | 353 | threonine aldolase | 99.79 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.79 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.78 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.78 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.78 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.77 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.77 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.77 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.77 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.77 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.77 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.77 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.76 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.76 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.76 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.75 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.75 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.74 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.74 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.74 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.74 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.74 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.74 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.73 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.73 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.73 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.73 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.73 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.73 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.73 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.72 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.72 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.72 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.72 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.72 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.71 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.71 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.71 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.71 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.71 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.71 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.71 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.7 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.7 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.7 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.69 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.69 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.69 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.68 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.68 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.68 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.68 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.68 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.67 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.67 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.67 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.67 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.67 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.66 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.66 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.65 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.65 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.64 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.64 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.64 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.63 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.63 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.63 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.62 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.62 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.62 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.62 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.62 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.62 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.61 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.61 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.61 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.61 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.61 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.61 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.6 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.6 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.6 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.6 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.59 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.59 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.58 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.58 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.58 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.57 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.57 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.57 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 99.57 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.56 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.56 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.56 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.56 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.56 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.55 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.55 | |
| PLN02651 | 364 | cysteine desulfurase | 99.55 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.55 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.54 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.54 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.54 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.54 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.54 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.53 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.53 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.53 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 99.52 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.52 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.51 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.51 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.49 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.49 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.49 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.49 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.49 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.48 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.47 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.46 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.46 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.46 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.43 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.43 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.43 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.43 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.43 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.43 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 99.42 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.42 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.41 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.41 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.41 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.41 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.41 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.41 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.41 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.39 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.39 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.39 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.39 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.38 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.38 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.37 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.37 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.37 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.36 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.36 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.36 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.36 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.36 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.36 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.35 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.35 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.35 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.35 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.35 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.34 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.34 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.34 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 99.34 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.34 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.33 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.33 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.33 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.32 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.32 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.32 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.32 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.31 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.31 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.3 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.29 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.29 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.28 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.28 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.28 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.27 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.27 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.27 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.27 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.27 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.26 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.26 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.25 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.25 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.25 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.25 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.24 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.23 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.23 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.23 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.23 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.23 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 99.23 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.22 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.21 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.21 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.2 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.2 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.2 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.2 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.19 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.17 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.17 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.16 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.16 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.15 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.15 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 99.15 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.15 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.14 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.14 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 99.14 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.14 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.14 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.13 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.13 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.13 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.13 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.11 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.1 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.1 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.1 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.1 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.1 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.09 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.09 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.08 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.08 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.08 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.07 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.07 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.07 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.06 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.06 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.06 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.05 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.05 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.04 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.04 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.03 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.03 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.03 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.03 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.02 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.02 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.02 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.01 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.0 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.0 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.0 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.0 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.0 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.0 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.99 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.99 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 98.98 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.98 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 98.97 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.97 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 98.96 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.96 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.96 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 98.95 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 98.95 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.94 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.94 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.94 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.94 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.93 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.93 | |
| PLN02476 | 278 | O-methyltransferase | 98.93 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.92 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.92 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.92 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.91 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.91 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.91 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.91 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.91 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.9 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.9 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.9 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 98.89 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 98.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.87 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.86 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.86 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 98.86 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 98.86 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.85 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.85 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.84 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 98.83 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.82 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.82 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 98.82 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.82 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.82 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.81 | |
| PLN02366 | 308 | spermidine synthase | 98.8 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.8 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.8 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.76 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.76 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.74 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.74 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 98.74 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.74 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.74 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.73 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 98.72 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.72 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 98.72 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.72 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.72 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.71 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 98.69 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.69 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 98.69 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.68 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.68 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.68 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 98.67 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.66 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 98.65 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 98.64 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 98.63 | |
| PLN02263 | 470 | serine decarboxylase | 98.62 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 98.62 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.61 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 98.61 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.61 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.6 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.59 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 98.58 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.57 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 98.57 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 98.56 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.54 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 98.54 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.54 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 98.54 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.53 | |
| PRK07046 | 453 | aminotransferase; Validated | 98.52 | |
| PLN02823 | 336 | spermine synthase | 98.52 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.51 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 98.51 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.51 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 98.51 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 98.5 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.5 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 98.5 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 98.49 |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-205 Score=1850.72 Aligned_cols=895 Identities=77% Similarity=1.239 Sum_probs=818.9
Q ss_pred CcccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
++|.|+|||||+|++.+.+.|...++..+++.+|||+|||+|.+++.+++.++..+|+|+|+|+++++.|++|++.|+++
T Consensus 89 ~~V~p~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 89 MMEIPSIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eeeCCCcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 57999999999999999999877666556678999999999999999999988889999999999999999999999875
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
+.+.+.++.+++.+.++++++++|+.+......++||+||+||||+..++...+.+++.++.|++|+++++|++++++++
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~ 248 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFV 248 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCC
Confidence 44444555555556678999999999876433237999999999999999888999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
++.+|+++++++++++.++|+|||.++++++..+++...++++++.||+...+|+.++.|+ .++||++++++||
T Consensus 249 ~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~~~~~~------~~~~~~~~~~~~~ 322 (1082)
T PLN02672 249 EDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQTKINQA------ADTDISALVEIEK 322 (1082)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeeehhhhc------cccchHHHHHHhh
Confidence 9999999999999999999999999999999999988754699999999999999999999 9999999999999
Q ss_pred cCCcceeEEecccCCCcccHHHHHHhhhcCcceeeeeeeeeccccCchhHHHHHHHHhcccccccccccccccccccccc
Q 043334 241 NSPHRFEFFMGLSGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLKNGFHEISSSLDLSFEDDSVADE 320 (903)
Q Consensus 241 ~~~~~f~f~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~d~~~~~~~~~~~ 320 (903)
|++|+|||||++++++|+||||||+|+|+||+|+|++|||+||+++|+|+|+|++|||+||+++++++||+|+|+++++|
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1082)
T PLN02672 323 NSRHRFEFFMGLVGDQPICARTAWAYGKAGGRISHALSVYSCQLRQPNQVKTIFKFLKNGFHEVSGSLDLSFEDESVADE 402 (1082)
T ss_pred cCccceeeeeccCCCCchhHHHHHHHHhcCCccchhhhhhhhhhcCchHHHHHHHHHHccchhhhhhccccccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeecccccc
Q 043334 321 KIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTR 400 (903)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (903)
||+|+|+||++||++|||||||||||++||||||||||+|||||||+|||||||||||||||+||||||||||||||+||
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1082)
T PLN02672 403 KIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHIPLTPDNVVVFPSRAVAIENALRLFSPRLAIVDEHLTR 482 (1082)
T ss_pred hccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCCcCCccceEEeccHHHHHHHHHHhhChHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhcccCCCCCCCCCCeeEEeeCCcchhHHHHHHHhcCCeEEEeecccchhccHHHHHHHHHHHhhccceEEe
Q 043334 401 HLPKHWLTSLTIKGTDTENSSEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLFL 480 (903)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 480 (903)
||||+|||+|++|++.++++++++|||||||||||||||||||+|||||||||++||++||+||||||++|+++|+||||
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (1082)
T PLN02672 483 WLPKKWLTSLAIENATSDSKSDDVITVIEAPRQSDLVIELIKKLKPQVVVTGMADFEMRTSTAFEHLLNVTAEIGARLFL 562 (1082)
T ss_pred cCCHHHHhHhhhhcccccCccCCeEEEEeCCCcchHHHHHHHhCCCeEEEEeccchhhhhHHHHHHHHHHHHhhCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccchhhhhHhhH
Q 043334 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGTTALISQNYY 560 (903)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 560 (903)
||||||||||+|+||||||||||++|||||+|||||||||||+||||||+|||++++++||+||+||||||||+++|+||
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1082)
T PLN02672 563 DISDHLELSSLPGSNGVLKYLAGHPLPSHAAIICGLVKNQVYSDLEVAFVISENEAVLKALSKTGEVLEGRTAIISQFYY 642 (1082)
T ss_pred ehhhheeeccCCCcccHHHHhcCCCCCcchhHhhhhhhccccccceEEEEecCcHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcccCCCccchhhHHhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHH
Q 043334 561 GCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFES 640 (903)
Q Consensus 561 ~~~~~~~l~~~~~~~~~~~~r~~~~~~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~a 640 (903)
||+|||||+||+++|||+++|.+++..+.++.+++.+....+..++..+....++++|+|++|+|++++|+.+++++.++
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~vI~LsinE~d~ppPp~V~eAi~ea 722 (1082)
T PLN02672 643 GCLFHELLAFQLADRHTPQERLPEEEESSKFIGFSSSARSALKEAELSVSGSQESSLIHMDVDESFLPVPSAVKASIFES 722 (1082)
T ss_pred HHHHHHHHhccCCCCCCCccccchhhhhHhhhCCCchhHHHHHhcccCCcccCCCCEEEEeCCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987655444556789999999999999999999999988
Q ss_pred HHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEE
Q 043334 641 FARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANI 720 (903)
Q Consensus 641 l~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~v 720 (903)
+.++....|++++++++++++++++|++.+++++|++|+|+++++..++.++++|||.|+++.|+|+.|...++..|+++
T Consensus 723 l~~~~~s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aLl~pGD~VLVp~PtY~~Y~~~a~~~Ga~v 802 (1082)
T PLN02672 723 FVRQNISESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCCVQEGGTLCFPAGSNGTYVSAAKFLKANF 802 (1082)
T ss_pred HhhcCCCCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEE
Confidence 76665567889999999999999999998765689999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCC
Q 043334 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWG 800 (903)
Q Consensus 721 v~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s 800 (903)
+.+|++++++|.+|++.+++++++.+++++++++|||||||.++|.+++++|+++|++||++||+||+|+++.|++..++
T Consensus 803 v~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s 882 (1082)
T PLN02672 803 RRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWG 882 (1082)
T ss_pred EEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCc
Confidence 99999866789999999999987644458999999779999999999999999999999999999999999999775432
Q ss_pred CCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccc
Q 043334 801 GWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKA 880 (903)
Q Consensus 801 ~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~ 880 (903)
.+++.+....++... ++.++|+++||||.|++||||+||++++++.+++.+.+......++...|.++..++.......
T Consensus 883 ~~sl~s~l~~~~~~s-ks~nVIvL~SfSKkf~lpGLRIGylIap~~eLi~~l~~~~~~s~~~~~~q~Aaaaalall~~~~ 961 (1082)
T PLN02672 883 GWDLKSILSRLKSSN-PSFAVALLGGLSTELLSGGHEFGFLALNDSVLIDAFHSAPGLSRPHSTLKYTIKKLLGLKNQKS 961 (1082)
T ss_pred ccchhhHHHHhcccc-CCceEEEEeCcHHhhccHHHHheeEEeCCHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHhccC
Confidence 233333333332210 1248999999999999999999999998766899998875555555567777766663111011
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 043334 881 RDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 881 ~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
..+.+++.+.++.|++||+++.
T Consensus 962 ~~~~~~l~e~r~~Lk~rRd~L~ 983 (1082)
T PLN02672 962 SDLLDGVAEQKKILKSRAERLK 983 (1082)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 2456788899999999999875
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=408.33 Aligned_cols=272 Identities=18% Similarity=0.287 Sum_probs=242.8
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.++|+|++|+|++++|+.+.+++.+++.. |.+..|.++||+++++++.+++|+..+++++|++|+|+++++..++.
T Consensus 28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred CCEEEeCCCCCCCCCCHHHHHHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 68999999999999999999999998764 55789999999999999999999999888679999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC-CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE-VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
++++|||+|++++|+|+.|...++.+|++++.++++.+ ++|.+|++.|++++++++ ++|++++|| ||||.+++++++
T Consensus 108 a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~kt-k~i~ln~P~-NPTGav~~~~~l 185 (393)
T COG0436 108 ALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKT-KAIILNSPN-NPTGAVYSKEEL 185 (393)
T ss_pred HhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccc-eEEEEeCCC-CCcCcCCCHHHH
Confidence 99999999999999999999999999999999998755 489999999999999977 599999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCC-CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYE-GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~-~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
++|+++|++||++||+||+|.++.|++. .++ +..+... .+++|+++||||+|+|+|||+||++++++++
T Consensus 186 ~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s-------~~~~~~~---~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l 255 (393)
T COG0436 186 KAIVELAREHDIIIISDEIYEELVYDGAEHPS-------ILELAGA---RDRTITINSFSKTYGMTGWRIGWVVGPPEEL 255 (393)
T ss_pred HHHHHHHHHcCeEEEEehhhhhcccCCCCcCC-------HhhcCCC---cceEEEEecccccccccccceeEeecChHHH
Confidence 9999999999999999999999999985 432 2222221 1589999999999999999999999995559
Q ss_pred HHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHhC
Q 043334 849 VDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 849 i~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
++.+.+++. .++++.++|.++..+|. +. +. ..+++.+++.|++||+++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~Q~aa~~aL~--~~--~~-~~~~~~~~~~~~~rrd~l~~ 307 (393)
T COG0436 256 IAALRKLKSYLTSCAPTPAQYAAIAALN--GP--QS-DEVVEEMREEYRERRDLLVE 307 (393)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHhc--Cc--cc-hHHHHHHHHHHHHHHHHHHH
Confidence 999987765 77999999999999994 33 12 36788888999999999863
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=364.53 Aligned_cols=298 Identities=13% Similarity=0.167 Sum_probs=252.1
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEE-ccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIH-MDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~Id-Ls~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l 661 (903)
++++....++.+..+.+... +.. ..+ |+.|.|++++|+.+.+++.+++. +|...+|.++++++|++.+
T Consensus 9 ~~~l~~~~~~vw~e~~~la~---e~~---~~~~LgqGfp~~~~P~fv~ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~ 82 (420)
T KOG0257|consen 9 NRNLSTSKPYVWTEINRLAA---EHK---VPNPLGQGFPDFPPPKFVTEAAKNAAKEPSTNQYTRGYGLPQLRKALAKAY 82 (420)
T ss_pred cccccccCCcHHHHHHHHHH---hcC---CCCcccCCCCCCCCcHHHHHHHHHHhccchhccccccCCchHHHHHHHHHH
Confidence 34455556667777775432 122 222 99999999999999999988765 4777899999999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC------CCCCcccCH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE------SEVGFKMTE 735 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~------~~~~f~ld~ 735 (903)
+..+|...+|+++|+||+|+.+++..++++++++||+|++.+|.|..|....+.+|++++.+++. ..++|.+|+
T Consensus 83 se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~ 162 (420)
T KOG0257|consen 83 SEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDP 162 (420)
T ss_pred HHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCCh
Confidence 99999988888899999999999999999999999999999999999999999999999999998 446899999
Q ss_pred HHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 736 KTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 736 ~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+.++.++++++ ++|++|+|| ||||.++|+++|++|+++|++||++||.||+|..+.|++..+ . .+..++++.
T Consensus 163 ~~le~~~t~kT-k~Ii~ntPh-NPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h--~----r~aslPgm~ 234 (420)
T KOG0257|consen 163 EELESKITEKT-KAIILNTPH-NPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKH--I----RIASLPGMY 234 (420)
T ss_pred HHHHhhccCCc-cEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcc--e----eeecCCchh
Confidence 99999999998 499999998 999999999999999999999999999999999999999865 1 233446664
Q ss_pred CCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccc-cchhHHHHHHHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRER-KARDLMNAVAEHIR 892 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~-~~~~~~~~l~~~r~ 892 (903)
+++|.++||||+||++|||+||+++++. ++.....+++ ...++++.|.|...++..... ..-+-..++.++.+
T Consensus 235 ---ertitvgS~gKtf~~TGWrlGW~igp~~-L~~~~~~vh~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~ 310 (420)
T KOG0257|consen 235 ---ERTITVGSFGKTFGVTGWRLGWAIGPKH-LYSALFPVHQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITELVK 310 (420)
T ss_pred ---heEEEeccccceeeeeeeeeeeeechHH-hhhhHHHHhhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHH
Confidence 6999999999999999999999999766 9998888876 667889999999999853221 00000145667999
Q ss_pred HHHHHHHHHhC
Q 043334 893 NLESRSKRLKE 903 (903)
Q Consensus 893 ~y~~Rr~~l~e 903 (903)
.|++||++|++
T Consensus 311 ~y~~krdil~k 321 (420)
T KOG0257|consen 311 EYKEKRDILAK 321 (420)
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=367.94 Aligned_cols=310 Identities=12% Similarity=0.123 Sum_probs=242.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCC--------C----------------------CCcHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSF--------L----------------------PIPSLVKAA 636 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~--------~----------------------~~p~~v~~a 636 (903)
+|.++.+++.+.+..+...... ++..+.++|+|++|+|+ + .+++.+.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~a~~-~~~~g~~vi~l~iG~Pd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a 89 (407)
T PLN02368 11 LNENVKKCQYAVRGELYLRASE-LQKEGKKIIFTNVGNPHALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARA 89 (407)
T ss_pred cCHHHHhhhhhcCCHHHHHHHH-HHHHhhhhhcccCCChhHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHH
Confidence 5677777777776665532111 23467899999999997 3 155556555
Q ss_pred HHHHH------HccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc-cCCCeEEEcCCCcHHH
Q 043334 637 IFESF------ARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI-LEGGTLCFPAGSNGNY 709 (903)
Q Consensus 637 l~~al------~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~-~pGD~Vlv~~P~y~~~ 709 (903)
+.... ..|....|.+++|+++++++++++|++.+++ +|++|+|+++++..++.+++ +|||.|++++|+|+.|
T Consensus 90 ~~~l~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y 168 (407)
T PLN02368 90 KHYLSLTSGGLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPE-LIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLY 168 (407)
T ss_pred HHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccH
Confidence 54421 1266678999999999999999889888877 99999999999999999987 7999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 710 VSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 710 ~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
...++..|++++.++++++++|.+|++.+++.+++ ++ ++++++||+ ||||.++|.+++++|+++|+++|++|
T Consensus 169 ~~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~-k~l~l~nP~-NPTG~v~s~e~l~~l~~~a~~~~~~I 246 (407)
T PLN02368 169 SATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITV-RAMVIINPG-NPTGQCLSEANLREILKFCYQERLVL 246 (407)
T ss_pred HHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCe-EEEEEECCC-CCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 99999999999999998777899999999998864 33 589999997 99999999999999999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhcc-CCCCCCceEEEccCchhc-ccccceeeEEEe---CcHHHHHHHHhCCC-
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYS-STNSSFNVSLLGGLSLKM-LTGALKFGFLVL---NHPQLVDAFSSFPG- 857 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~-~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~---~~~~li~~l~~~~~- 857 (903)
|+||+|.++.|++... +.++.+....++. .. ..+++|+++||||+| |+||||+||+++ +++ +++++.+...
T Consensus 247 I~DE~Y~~l~y~~~~~-~~s~~~~~~~~~~~~~-~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~-li~~~~~~~~~ 323 (407)
T PLN02368 247 LGDEVYQQNIYQDERP-FISAKKVLMDMGPPIS-KEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPK-TVEEIYKVASI 323 (407)
T ss_pred EEEccccccccCCCCC-cccHHHHHhhhccccc-ccceEEEEecCCcccccCCccceEEEEEeCCCHH-HHHHHHHHhcc
Confidence 9999999999976421 1222222212211 00 014899999999999 899999999995 555 9999988753
Q ss_pred CCCCcHHHHHHHHHHHhccc-c--cchhHHHHHHHHHHHHHHHHHHHhC
Q 043334 858 LSKPHSTVRYAIKKLLGLRE-R--KARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 858 ~~~~s~~~Q~aa~~~L~~~~-~--~~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
.+++++++|.++..+|.... + ..+.+.+++..+++.|++||+++++
T Consensus 324 ~~~~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~ 372 (407)
T PLN02368 324 ALSPNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTD 372 (407)
T ss_pred cCCCCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999994111 1 0012334456678999999998863
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=363.84 Aligned_cols=289 Identities=16% Similarity=0.214 Sum_probs=250.6
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++.+++.+.++.+.... .+.++|+|+.|.|++++|+.+.+++.+++.+ |.+..|.+++|++++++++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~ 105 (413)
T PLN00175 32 VAKRLEKFKTTIFTQMSSLA------IKHGAINLGQGFPNFDGPDFVKEAAIQAIRDGKNQYARGFGVPELNSAIAERFK 105 (413)
T ss_pred hhHHhhcCCCCHHHHHHHHh------hcCCeEecCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCCCHHHHHHHHHHHH
Confidence 67788888888887776542 2347999999999999999999988887653 6667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|++.+++.+|++|+|+++++..++.++++|||+|++++|+|+.|...++..|++++.++++.+ +|.+|++.|++.+
T Consensus 106 ~~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~-~~~~~~~~l~~~~ 184 (413)
T PLN00175 106 KDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPP-DFAVPEDELKAAF 184 (413)
T ss_pred HHhCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcc-cCCCCHHHHHHhc
Confidence 999998887657999999999999999999999999999999999999999999999999999754 4889999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|+ ||||.++|.+++++|+++|++++++||+||+|.++.|++...+ +..+++. .+++|
T Consensus 185 ~~~~-k~i~i~~p~-NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s-------~~~~~~~---~~~vi 252 (413)
T PLN00175 185 TSKT-RAILINTPH-NPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHIS-------MASLPGM---YERTV 252 (413)
T ss_pred CcCc-eEEEecCCC-CCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccC-------hhhCCCC---cCcEE
Confidence 8766 589999998 9999999999999999999999999999999999999764321 2223332 15899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.|++||||+||++++++ +++.+.+... ..+++.+.|.++..+|. ++ +.+++++++.|++|+++
T Consensus 253 ~i~SfSK~~~~~G~RiG~~v~~~~-l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 324 (413)
T PLN00175 253 TMNSLGKTFSLTGWKIGWAIAPPH-LTWGVRQAHSFLTFATATPMQWAAVAALR--AP-----ESYYEELKRDYSAKKDI 324 (413)
T ss_pred EEecchhhccCcchheeeeEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHh--CC-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9998887764 67889999999999994 33 36889999999999998
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 325 l~ 326 (413)
T PLN00175 325 LV 326 (413)
T ss_pred HH
Confidence 75
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=362.19 Aligned_cols=307 Identities=18% Similarity=0.210 Sum_probs=250.1
Q ss_pred HhhHhhHHHHHHHHHhhcccCCCccchhhHHhhhhccCCCCHHHHHHHHhhhh-ccCCCCCeEEccCCCCCCCCcHHHHH
Q 043334 557 QNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIGFSRSAISVLNSAELSI-TETPNSGLIHMDVDQSFLPIPSLVKA 635 (903)
Q Consensus 557 ~~~~~~~~~~~l~~~~~~~~~~~~r~~~~~~s~~~~~l~~s~i~~l~~a~~a~-~~~~~~~~IdLs~g~p~~~~p~~v~~ 635 (903)
+.|++++|++++. ++... +....+.+..+.....+. ...++.++|+|+.|+|++++++.+.+
T Consensus 2 ~~~~~~~~~~~~~----------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~g~p~~~~~~~~~~ 64 (410)
T PRK06290 2 ESYIQNLFAERIG----------GKNFG-------KETVIYKFEKIKRAKRAAKEKHPDMELIDMGVGEPDEMADESVVE 64 (410)
T ss_pred hhHHHHHHHHHhc----------Ccccc-------ccCchhHHHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCCCHHHHH
Confidence 3588999988766 22222 122233455555432221 12356679999999999999999998
Q ss_pred HHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCC-CCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH
Q 043334 636 AIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFP-IDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY 709 (903)
Q Consensus 636 al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~-~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~ 709 (903)
++.+.+.. |. ..|.+++|+++++++++.+|+. .+++++|++|+|+++++..++.+++++||.|++++|+|+.|
T Consensus 65 ~l~~~~~~~~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~~~~gd~Vlv~~P~y~~~ 143 (410)
T PRK06290 65 VLCEEAKKPENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYPVT 143 (410)
T ss_pred HHHHHHhCCCCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHhCCCCCEEEEeCCCCccH
Confidence 88876532 43 4789999999999999988987 77755799999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCC
Q 043334 710 VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAF 789 (903)
Q Consensus 710 ~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY 789 (903)
...++..|++++.++++++++|.+|++.+++.+.+++ ++|++++|| ||||.++|.+++++|+++|+++|++||+||+|
T Consensus 144 ~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~-k~i~l~nP~-NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY 221 (410)
T PRK06290 144 GTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKA-KLLYLNYPN-NPTGAVATKEFYEEVVDFAKENNIIVVQDAAY 221 (410)
T ss_pred HHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccc-eEEEEECCC-CCCCcCCCHHHHHHHHHHHHHcCeEEEEecch
Confidence 9999999999999999877789999999998887665 599999998 99999999999999999999999999999999
Q ss_pred CCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHH
Q 043334 790 SGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRY 867 (903)
Q Consensus 790 ~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~ 867 (903)
.++.|++...+ +. .+.... +++|+++||||.||+||+|+||++++++ +++.+.+... ..+++.++|.
T Consensus 222 ~~~~~~~~~~s------~~-~~~~~~---~~~I~i~SfSK~~g~~GlRiG~ii~~~~-l~~~l~~~~~~~~~~~~~~~q~ 290 (410)
T PRK06290 222 AALTFDGKPLS------FL-SVPGAK---EVGVEIHSLSKAYNMTGWRLAFVVGNEL-IVKAFATVKDNNDSGQFIAIQK 290 (410)
T ss_pred hhceeCCCCcC------hh-cCCCcc---ccEEEEeechhhcCCchhheEeEEeCHH-HHHHHHHHHhccccCCcHHHHH
Confidence 99988764321 11 122221 4789999999999999999999999887 9999987765 5566678999
Q ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 868 AIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 868 aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++..+|+ ++ .+++++++.|++|++.+.
T Consensus 291 aa~~~l~--~~------~~~~~~~~~~~~~~~~l~ 317 (410)
T PRK06290 291 AGIYALD--HP------EITEKIREKYSRRLDKLV 317 (410)
T ss_pred HHHHHhh--Cc------HHHHHHHHHHHHHHHHHH
Confidence 9999994 33 567888999999988775
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=361.28 Aligned_cols=296 Identities=16% Similarity=0.163 Sum_probs=240.0
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~ 662 (903)
++++..++.+.+..+..+.. ..+..+.++|+|+.|+|++++++.+.+++.+.+.. |....|.+++|+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 82 (388)
T PRK07366 4 AQRLQPLQSNVFADMDRAKA-QARAAGKELIDLSLGSSDLPAPAHALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYE 82 (388)
T ss_pred hhhhhcCCccHHHHHHHHHH-HHHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHH
Confidence 44555556555555443221 11346778999999999999999999998887642 5566899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|+..+++.+|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.+|++.+++|.+|++.+.+.+
T Consensus 83 ~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (388)
T PRK07366 83 QRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEV 162 (388)
T ss_pred HhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhh
Confidence 98998888764699999999999999999999999999999999999999999999999999987678999999998877
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|| ||||.++|.+++++|+++|+++|++||+||+|.++.|++... .. + +..++.. .+++|
T Consensus 163 ~~~~-k~i~l~~p~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~-~~---~-~~~~~~~---~~~vi 232 (388)
T PRK07366 163 LAQA-RLMVLSYPH-NPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVE-PP---S-ILQADPE---KSVSI 232 (388)
T ss_pred cccc-eEEEEeCCC-CCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCC-CC---C-hhhCCCC---cccEE
Confidence 6655 599999997 999999999999999999999999999999999999876431 01 1 2222222 14799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+||+||+|+||++++++ +++++.++.. ..+.++..|.++...|. +. ++|++++++.|++||+.
T Consensus 233 ~~~SfSK~~g~~GlRiG~~v~~~~-li~~l~~~~~~~~~~~~~~~~~~a~~~l~--~~-----~~~l~~~~~~~~~~r~~ 304 (388)
T PRK07366 233 EFFTLSKSYNMGGFRIGFAIGNAQ-LIQALRQVKAVVDFNQYRGILNGAIAALT--GP-----QATVQQTVQIFRQRRDA 304 (388)
T ss_pred EEeecccccCCcchhheehcCCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9999988765 33333444555666662 22 37899999999999998
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 305 l~ 306 (388)
T PRK07366 305 FI 306 (388)
T ss_pred HH
Confidence 75
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=360.88 Aligned_cols=300 Identities=14% Similarity=0.195 Sum_probs=244.7
Q ss_pred hhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhc
Q 043334 589 TEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNF 665 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~ 665 (903)
+++.+++.+.+..+...........|.++|+|+.|+|++++++.+.+++.+.+. .|....|.+++|+++++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~ 82 (396)
T PRK09147 3 PRLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTTAGLPALREAIAAWLERRY 82 (396)
T ss_pred chhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCCCCCHHHHHHHHHHHHHHh
Confidence 345566666776666432211124678999999999999989888888877544 37777899999999999999989
Q ss_pred CCC-CCCCCcEEecCchHHHHHHHHHHhccC---CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 666 GFP-IDINAEFIYADCSQSLFNKLVLCCILE---GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 666 G~~-~~pe~~I~vt~Gs~~al~~ll~~l~~p---GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
|.+ .+++++|++|+|+++++..++.++++| ||.|++++|+|+.|..+++..|++++.+|++++++|.+|++++++.
T Consensus 83 g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~ 162 (396)
T PRK09147 83 GLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAE 162 (396)
T ss_pred CCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHH
Confidence 987 777558999999999999999999999 8999999999999999999999999999998777899999999888
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+.+++ ++++++||+ ||||.++|.+++++|+++|++++++||+||+|.++.|++...+ .+.......+.... .+++
T Consensus 163 ~~~~~-k~i~l~nP~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~v 237 (396)
T PRK09147 163 VWART-QLLFVCSPG-NPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPP-LGLLEAAAELGRDD--FKRL 237 (396)
T ss_pred Hhhcc-EEEEEcCCC-CCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCC-chhhhhccccCccc--cccE
Confidence 76655 589999997 9999999999999999999999999999999999988763211 11100011111100 1589
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|+++||||.|++||+|+||+++++. +++.+.+... ..+++.+.|.++...+. . ++++.+.++.|++|++
T Consensus 238 i~~~S~SK~~~~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~~~--~------~~~~~~~~~~~~~~~~ 308 (396)
T PRK09147 238 VVFHSLSKRSNVPGLRSGFVAGDAA-LLKKFLLYRTYHGCAMPPAVQAASIAAWN--D------EAHVRENRALYREKFD 308 (396)
T ss_pred EEEeccccccCCccceeeeecCCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHhc--c------hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 9998887664 46788899999888883 2 2678889999999998
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.++
T Consensus 309 ~~~ 311 (396)
T PRK09147 309 AVT 311 (396)
T ss_pred HHH
Confidence 875
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=360.02 Aligned_cols=295 Identities=14% Similarity=0.165 Sum_probs=245.4
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCC-CCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNM-SESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~-~~G~~~lr~ala~~l~~ 663 (903)
++++....++.+..+...... ....++++|+|+.|+|++++++.+.+++.+.+.. |++ ..|.+++|+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~lr~aia~~~~~ 84 (399)
T PRK07681 6 ATRMKAFQSSIFSELGAYKKE-KIAAGHKMIDLSIGNPDMPPADFVREEMVHTANQKESYGYTLSGIQEFHEAVTEYYNN 84 (399)
T ss_pred hHHHhhcCccHHHHHHHHHHH-hhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhccccCCCCCCCcHHHHHHHHHHHHH
Confidence 344555555666665532110 1235678999999999999999999998887643 433 47899999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
++|++.+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++++|++++++|.+|++.+++.+.
T Consensus 85 ~~g~~~~~~~~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~ 164 (399)
T PRK07681 85 THNVILNADKEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA 164 (399)
T ss_pred HhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 89998887339999999999999999999999999999999999999999999999999999877789999999998887
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .+++|+
T Consensus 165 ~~~-k~v~l~~P~-NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~--~~----~~~~~~~---~~~~i~ 233 (399)
T PRK07681 165 DKA-KMMILNFPG-NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKP--IS----FLSVPGA---KEVGVE 233 (399)
T ss_pred ccc-eEEEEeCCC-CCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCC--CC----hhhCCCC---cccEEE
Confidence 666 599999997 999999999999999999999999999999999999876532 11 1122222 148999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||+||+|+||++++++ +++++.+... ..+++.+.|.++..+|. ++ ..++++.++.|++|++.+
T Consensus 234 ~~S~SK~~~~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 305 (399)
T PRK07681 234 INSLSKSYSLAGSRIGYMIGNEE-IVRALTQFKSNTDYGVFLPIQKAACAALR--NG-----AAFCEKNRGIYQERRDTL 305 (399)
T ss_pred EeecccccCCccceeEEEecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 9999988764 56789999999999994 33 267888899999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 306 ~ 306 (399)
T PRK07681 306 V 306 (399)
T ss_pred H
Confidence 5
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=352.79 Aligned_cols=290 Identities=14% Similarity=0.209 Sum_probs=244.2
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH----ccCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~----~y~~~~G~~~lr~ala~~l~ 662 (903)
+++++.......++.+..... ..+++|+|+.|+|++++++.+.+++..... .|....|.+++|++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 80 (384)
T PRK06348 6 LAKKYQQMEVNIMAEIATLAK-----KFPDIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTDSGGDVELIEEIIKYYS 80 (384)
T ss_pred HHHHHhcCCccHHHHHHHHHH-----hcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 556666666666766665432 345789999999999888887776555432 36777899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.++++|||+|++++|+|+.|...++..|++++.+++.++++|.+|++.+++.+
T Consensus 81 ~~~~~~~~~~-~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~ 159 (384)
T PRK06348 81 KNYDLSFKRN-EIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALI 159 (384)
T ss_pred HHhCCCCChh-hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhh
Confidence 8899888887 999999999999999999999999999999999999999999999999999876678999999999988
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.++|.+++++|+++|++++++||+||+|.++.|++... + +..+++.+ +++|
T Consensus 160 ~~~~-~~v~l~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~---~----~~~~~~~~---~~vi 227 (384)
T PRK06348 160 TSKT-KAIILNSPN-NPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV---P----MATLAGMP---ERTI 227 (384)
T ss_pred CcCc-cEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCcc---c----hhhcCCCc---CcEE
Confidence 7665 589999997 999999999999999999999999999999999999875432 1 22233222 5899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+||+||+|+||++++++ +++.+.++.. ..+++.+.|.++..+|. +. +.+++++++.|++|++.
T Consensus 228 ~~~SfSK~~~l~GlRiG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~r~~~ 299 (384)
T PRK06348 228 TFGSFSKDFAMTGWRIGYVIAPDY-IIETAKIINEGICFSAPTISQRAAIYALK--HR-----DTIVPLIKEEFQKRLEY 299 (384)
T ss_pred EEecchhccCCccccceeeecCHH-HHHHHHHHHHhccCCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9998887764 56789999999999994 22 46788899999999887
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 300 ~~ 301 (384)
T PRK06348 300 AY 301 (384)
T ss_pred HH
Confidence 64
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=364.30 Aligned_cols=310 Identities=15% Similarity=0.162 Sum_probs=240.2
Q ss_pred HhhhhccCCCCHHHHHHH-Hhhhhc----c----CCCCCeEEccCCCCC----------------CCC------------
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSIT----E----TPNSGLIHMDVDQSF----------------LPI------------ 629 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~----~----~~~~~~IdLs~g~p~----------------~~~------------ 629 (903)
+|.++.++.++....+.. +.. +. . .++.++|+|++|+|+ +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~vi~~~~G~p~~~~~~~~~~~~~~~~~~~~p~~i~~~~~~~~ 88 (481)
T PTZ00377 10 INPRVVAAEYAVRGLVPARAAE-IKEELKTGKGKYPFDSIVYCNIGNPQALGQKPLTFYRQVLSLVEYPFLLEDPSVSSL 88 (481)
T ss_pred cCHHHhhhhhhcCChHHHHHHH-HHHHHhcCCccCCcceeEEcCCCChhhcCCCCchHHHHHHHHccChhhhcCcccccc
Confidence 566777776665554432 111 10 1 145799999999996 665
Q ss_pred -cHHHHHHHHHHHHc-------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc-cCCCeEE
Q 043334 630 -PSLVKAAIFESFAR-------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI-LEGGTLC 700 (903)
Q Consensus 630 -p~~v~~al~~al~~-------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~-~pGD~Vl 700 (903)
|..+++++.+++.. |.+..|.+++|+++++++++.+|++++++ +|++|+|+++++..++.+++ +|||.|+
T Consensus 89 ~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~al~~~~~~l~~~~gD~Vl 167 (481)
T PTZ00377 89 FPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPS-DIFLTDGASSGIKLLLQLLIGDPSDGVM 167 (481)
T ss_pred CCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChh-hEEEcCCHHHHHHHHHHHhccCCCCEEE
Confidence 44677776654432 56677999999999999999899998887 99999999999999999998 7999999
Q ss_pred EcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCHHHHHHHHH
Q 043334 701 FPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTINPTGLLYSNKEIENILT 774 (903)
Q Consensus 701 v~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~eel~eI~~ 774 (903)
+++|+|+.|...++..|++++.++++++++|.+|++++++.+++ ++ ++++++||+ ||||.++|.+++++|++
T Consensus 168 v~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~-k~l~l~~P~-NPTG~~~s~e~~~~i~~ 245 (481)
T PTZ00377 168 IPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITP-RALVVINPG-NPTGQVLTRDVMEEIIK 245 (481)
T ss_pred ECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCe-eEEEEECCC-CCCCcCCCHHHHHHHHH
Confidence 99999999999999999999999998778899999999999874 34 589999997 99999999999999999
Q ss_pred HHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh-cccccceeeEEEe---CcHHHHH
Q 043334 775 VCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK-MLTGALKFGFLVL---NHPQLVD 850 (903)
Q Consensus 775 ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~-~g~~GlRiG~lv~---~~~~li~ 850 (903)
+|+++|++||+||+|.++.|++.. ++.++.+....+........++|+++||||+ +++||||+||+++ +++ +++
T Consensus 246 ~a~~~~~~iI~De~Y~~l~~~~~~-~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~-li~ 323 (481)
T PTZ00377 246 FCYEKGIVLMADEVYQENIYDGEK-PFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPE-VRE 323 (481)
T ss_pred HHHHCCCEEEEehhhHhhccCCCC-CcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHH-HHH
Confidence 999999999999999999996432 1122222222222110001279999999998 6999999999997 555 999
Q ss_pred HHHhCCC-CCCCcHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPG-LSKPHSTVRYAIKKLLGLR---ERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~-~~~~s~~~Q~aa~~~L~~~---~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+.+. ..+++.+.|.++..+|... ++..+.+..++.++++.|++||+.++
T Consensus 324 ~l~~~~~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~ 379 (481)
T PTZ00377 324 QIYKLASINLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLT 379 (481)
T ss_pred HHHHHhheecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 5578999999999999411 11112234455566667899998875
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=352.00 Aligned_cols=295 Identities=17% Similarity=0.209 Sum_probs=243.6
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
++++.....+.+..+.+.... .+..++++++|+.|+|++++++.+.+++.+++. .|.+..|.+++|++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 81 (383)
T TIGR03540 3 ADRIENLPPYLFAEIDKKKAE-KKAEGVDVISLGIGDPDLPTPKHIVEALCKAAENPENHRYPSYEGMLAYRQAVADWYK 81 (383)
T ss_pred chhhccCChhHHHHHHHHHHH-HHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 344555555555444432110 124678999999999999989989998887654 36667789999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.+|++.+++|.+|++++++.+
T Consensus 82 ~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~ 161 (383)
T TIGR03540 82 RRFGVELDPETEVLSLIGSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDI 161 (383)
T ss_pred HhhCCCCCCCCeEEECCCcHHHHHHHHHHhCCCCCEEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhc
Confidence 98898877664799999999999999999999999999999999999999999999999999987678889999999888
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .+++|
T Consensus 162 ~~~~-~~v~i~~P~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~--~~----~~~~~~~---~~~~i 230 (383)
T TIGR03540 162 AKKA-KLMFINYPN-NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKA--PS----FLEVDGA---KDVGI 230 (383)
T ss_pred cccc-eEEEEeCCC-CCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCC--cC----cccCCCc---ccCEE
Confidence 7665 599999997 999999999999999999999999999999999998866432 11 1222221 14789
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||++++++ +++++..+.. ..+++.+.|.++..+|. ++ ++|++++++.|++|++.
T Consensus 231 ~~~SfSK~~g~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 302 (383)
T TIGR03540 231 EFHSLSKTYNMTGWRIGMAVGNAD-LIAGLGKVKTNVDSGVFQAIQYAAIAALN--GP-----QDVVKEIRKIYQRRRDL 302 (383)
T ss_pred EEEecccccCCccceeeEEeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHh--CC-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9998887654 55778899999999994 33 47888899999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 303 ~~ 304 (383)
T TIGR03540 303 LL 304 (383)
T ss_pred HH
Confidence 75
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=350.49 Aligned_cols=294 Identities=17% Similarity=0.191 Sum_probs=242.5
Q ss_pred hhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHh
Q 043334 589 TEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~ 663 (903)
+++....++.+..+..... -....++++++|+.|+|++++++.+.+++.+++.. |....|.+++|+++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 84 (385)
T PRK09276 6 DRIKNLPPYLFAEIDKKKA-EKIARGVDVISLGIGDPDLPTPDHIIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKR 84 (385)
T ss_pred hHhhhCCccHHHHHHHHHH-HHHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 3444455554554443211 01246778999999999999999999998887643 55667899999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+|.+.+++++|++|+|+++++..++.++++|||+|++++|+|+.|...++..|++++.++++.+++|.+|++.+++.+.
T Consensus 85 ~~g~~~~~~~~ii~t~G~~~~i~~~~~~~~~~gd~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~ 164 (385)
T PRK09276 85 RFGVELDPETEVISLIGSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA 164 (385)
T ss_pred HhCCCCCCCCcEEEccCcHHHHHHHHHHhCCCCCEEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc
Confidence 88988777646999999999999999999999999999999999999999999999999999866689999999998887
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .+++|+
T Consensus 165 ~~~-~~v~l~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~~---~~~~i~ 233 (385)
T PRK09276 165 KKA-KLMFINYPN-NPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKP--PS----FLEVPGA---KDVGIE 233 (385)
T ss_pred ccc-eEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCC--CC----hhccCCC---cCCEEE
Confidence 666 599999997 999999999999999999999999999999999988875432 11 2223322 147999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||+||+|+||++++++ +++.+.++.. ..+++.+.|.++..+|. +. +.|++++++.|++|++.+
T Consensus 234 ~~S~SK~~g~~GlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 305 (385)
T PRK09276 234 FHSLSKTYNMTGWRIGFAVGNAD-LIAGLGKVKSNVDSGVFQAIQEAGIAALN--GP-----QEVVEELRKIYQERRDIL 305 (385)
T ss_pred EecchhhcCCcchhheeeeCCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHc--Cc-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 9999987664 55677889999999994 22 478889999999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 306 ~ 306 (385)
T PRK09276 306 V 306 (385)
T ss_pred H
Confidence 5
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=350.70 Aligned_cols=295 Identities=16% Similarity=0.156 Sum_probs=242.1
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
++++.++..+.+..+.+... ..+..|+++++|+.|+|+.++|..+.+++.+.+. .|.+..|.+++|++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 87 (394)
T PRK05942 9 ADRLQALPPYVFARLDELKA-RAREQGLDLIDLGMGNPDGAAPQPVIEAAIAALADPQNHGYPPFEGTASFRQAITDWYH 87 (394)
T ss_pred hhhhccCCCcHHHHHHHHHH-HHHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHH
Confidence 34455555555544432111 0134677899999999988777777777666553 26667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+++|++.+++++|++|+|+++++..++.++++|||+|++++|+|+.+...+...|++++.++++.+++|.+|++++++.+
T Consensus 88 ~~~~~~~~~~~~i~vt~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 167 (394)
T PRK05942 88 RRYGVELDPDSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPIILKPENDWLIDLSSIPEEV 167 (394)
T ss_pred HHHCCCcCCCCeEEEccChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeecCCccCCccCHHHHHHhc
Confidence 98898888774699999999999999999999999999999999999999999999999999987678999999999988
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... . .+..+++.+ +++|
T Consensus 168 ~~~~-k~i~l~~P~-NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~--~----~~~~~~~~~---~~~i 236 (394)
T PRK05942 168 AQQA-KILYFNYPS-NPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQP--T----SLLEIPGAK---DIGV 236 (394)
T ss_pred cccc-eEEEEcCCC-CCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC--C----ChhhCCCcc---ccEE
Confidence 7666 599999997 999999999999999999999999999999999998876532 1 122232222 4789
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||++++++ +++.+..... ..++++++|.++..+|. .. ++++++.++.|++|+++
T Consensus 237 ~~~SfSK~~~~~GlRiG~i~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 308 (394)
T PRK05942 237 EFHTLSKTYNMAGWRVGFVVGNRH-IIQGLRTLKTNLDYGIFSALQKAAETALQ--LP-----DSYLQQVQERYRTRRDF 308 (394)
T ss_pred EEecchhccCChhhheeeeecCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9999988765 56788899999999994 22 46888899999999987
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 309 ~~ 310 (394)
T PRK05942 309 LI 310 (394)
T ss_pred HH
Confidence 75
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=349.80 Aligned_cols=293 Identities=17% Similarity=0.200 Sum_probs=240.5
Q ss_pred hhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHH
Q 043334 589 TEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~ 662 (903)
+++.+...+.+..+.. +.. ....++++|+|+.|+|++++++.+.+++.+++.. |.+..|.+++|+++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~ 84 (389)
T PRK08068 7 ELLKQLPKQFFASLVAKVNK--KVAEGHDVINLGQGNPDQPTPEHIVEALQEAAENPANHKYSPFRGYPFLKEAAADFYK 84 (389)
T ss_pred hHhhhcCccHHHHHHHHHHH--HHhcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3444555555555443 111 0135567999999999988888888888887653 6667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+++.+|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.+|++++++|.+|++++++.+
T Consensus 85 ~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~ 164 (389)
T PRK08068 85 REYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEV 164 (389)
T ss_pred HHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhc
Confidence 88898887765799999999999999999999999999999999999999999999999999987668999999999888
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|| ||||.++|.+++++|+++|++++++||+||+|.++.|++... . ++.... +. .+++|
T Consensus 165 ~~~~-~~v~l~~P~-NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~--~---s~~~~~-~~---~~~~i 233 (389)
T PRK08068 165 AEKA-KLMYLNYPN-NPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKP--V---SFLQTP-GA---KDVGI 233 (389)
T ss_pred cccc-eEEEEECCC-CCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCC--c---ChhhCC-Cc---cCCEE
Confidence 7655 599999998 999999999999999999999999999999999988876321 1 122222 11 14899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+||+||+|+||++++++ +++.+.+... ..+.+.+.|.++..+|. ++ .++++++++.|++||+.
T Consensus 234 ~~~S~SK~~g~~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~r~~ 305 (389)
T PRK08068 234 ELYTLSKTFNMAGWRVAFAVGNES-VIEAINLLQDHLFVSLFGAIQDAAIEALL--SD-----QSCVAELVARYESRRNA 305 (389)
T ss_pred EEecchhccCCccceeEeEecCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9999987765 34555678999888883 22 27888999999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 306 ~~ 307 (389)
T PRK08068 306 FI 307 (389)
T ss_pred HH
Confidence 75
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=351.10 Aligned_cols=297 Identities=16% Similarity=0.177 Sum_probs=240.9
Q ss_pred HHhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHH
Q 043334 586 AKSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 586 ~~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~ 660 (903)
+.++++.+++.+.+..+.....+ .+..+.+.++|+.|+|+.++|+.+.+++.+.+. .|....|.+++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~ 83 (403)
T PRK08636 5 IEFNKIKRLPKYVFAEVNELKMA-ARRAGEDIIDFSMGNPDGPTPQHIIDKLCESAQKPKTHGYSVSKGIYKLRLAICNW 83 (403)
T ss_pred HHHHHHHhCCccHHHHHHHHHHH-HHhcCCCEEEcCCcCCCCCCCHHHHHHHHHHhcCCccCCCCCCCCCHHHHHHHHHH
Confidence 34566777777666655542211 123567899999999998877777777766543 366678999999999999
Q ss_pred HHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH--
Q 043334 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL-- 738 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L-- 738 (903)
+++.+|++.+++++|++|+|+++++..++.++++|||.|++++|+|+.+...++..|+++++++++.+++|.+|++.+
T Consensus 84 l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~ 163 (403)
T PRK08636 84 YKRKYNVDLDPETEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFE 163 (403)
T ss_pred HHHHhCCCCCCCCeEEECCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhh
Confidence 999899888876479999999999999999999999999999999999999999999999999986556688998754
Q ss_pred --HHHhhc---CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 739 --VTILET---VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 739 --~~~l~~---~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
+++++. ++ +++++++|+ ||||.++|.+++++|+++|++|+++||+||+|+++.|++... . .+..++.
T Consensus 164 ~l~~~~~~~~~~~-~~i~~~~P~-NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~--~----~~~~~~~ 235 (403)
T PRK08636 164 NLEKALRESSPKP-KYVVVNFPH-NPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKT--P----SILEVEG 235 (403)
T ss_pred HHHHHHhhccCCc-eEEEEeCCC-CCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCC--C----ChhcCCC
Confidence 555542 33 589999997 999999999999999999999999999999999999876432 1 1222333
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHI 891 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r 891 (903)
.+ +++|+++||||+||+||+|+||++++++ +++++.++.. ..+++++.|.++..++. +. ++++++++
T Consensus 236 ~~---~~~i~~~S~SK~~~~~GlRiG~iv~~~~-li~~~~~~~~~~~~~~~~~~q~~~~~~~~--~~-----~~~~~~~~ 304 (403)
T PRK08636 236 AK---DVAVESYTLSKSYNMAGWRVGFVVGNKK-LVGALKKIKSWLDYGMFTPIQVAATIALD--GD-----QSCVEEIR 304 (403)
T ss_pred cc---ccEEEEEecccccCCccceeeeeeCCHH-HHHHHHHHHHHhcccCChHHHHHHHHHHh--Cc-----HHHHHHHH
Confidence 22 4789999999999999999999999887 9999887764 46778889998887763 22 46889999
Q ss_pred HHHHHHHHHHh
Q 043334 892 RNLESRSKRLK 902 (903)
Q Consensus 892 ~~y~~Rr~~l~ 902 (903)
+.|++|++.+.
T Consensus 305 ~~~~~~~~~l~ 315 (403)
T PRK08636 305 ETYRKRRDVLI 315 (403)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=348.18 Aligned_cols=292 Identities=13% Similarity=0.172 Sum_probs=248.0
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
++.++.++.++.+..+...... ....+++.++|+.|+|++++|+.+.+++.+.+.. |.+..|.+++|+++++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 83 (387)
T PRK08960 5 YSRRSRDIEPFHVMALLARANE-LEAAGHDVIHLEIGEPDFTTAEPIVAAGQAALAAGHTRYTAARGLPALREAIAGFYA 83 (387)
T ss_pred hhhHHHhCCchHHHHHHHHHHH-HHhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCHHHHHHHHHHHH
Confidence 3455666667777666542110 1246778999999999999999999999887753 6667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.++++|||+|++++|+|+.+...++..|++++.++++.+++|.+|++.+++.+
T Consensus 84 ~~~g~~~~~~-~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~ 162 (387)
T PRK08960 84 QRYGVDVDPE-RILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHW 162 (387)
T ss_pred HHhCCCCChh-hEEEccCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHh
Confidence 9889888877 999999999999999999999999999999999999999999999999999987668999999999988
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... +... + . +++|
T Consensus 163 ~~~~-~~i~i~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~------~~~~-~---~---~~vi 227 (387)
T PRK08960 163 NADT-VGALVASPA-NPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA------SVLE-V---D---DDAF 227 (387)
T ss_pred Cccc-eEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC------Chhh-c---c---CCEE
Confidence 8766 489999998 999999999999999999999999999999999988865432 1111 1 1 4799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||++++++ +++++.++.. ..+++.+.|.++..+|. +. .++++.++++.|++|++.
T Consensus 228 ~~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~a~~~~l~--~~----~~~~l~~~~~~~~~~~~~ 300 (387)
T PRK08960 228 VLNSFSKYFGMTGWRLGWLVAPPA-AVPELEKLAQNLYISASTPAQHAALACFE--PE----TLAILEARRAEFARRRDF 300 (387)
T ss_pred EEeecccccCCcccEEEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhh--cC----cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9999988765 56789999999999994 22 247889999999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 301 l~ 302 (387)
T PRK08960 301 LL 302 (387)
T ss_pred HH
Confidence 75
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=361.64 Aligned_cols=296 Identities=13% Similarity=0.201 Sum_probs=241.1
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCC---CCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQS---FLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQ 659 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~ 659 (903)
+|+++.++..+.+..+.. +.. ++..|.++|+|++|+| ++++|+.+++++.+++. .|....|.+++|+++++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~~~G~~~lReaia~ 196 (517)
T PRK13355 119 KSHKLDNVLYDVRGPVVDEANR--MEAAGTHILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSDSKGLFSARKAIMQ 196 (517)
T ss_pred hhHHhhccCccHHHHHHHHHHH--HHHcCCCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCcChHHHHHHHHH
Confidence 788999999988876653 222 2457889999999998 57789999988887654 37778899999999999
Q ss_pred HHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHH
Q 043334 660 YIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLV 739 (903)
Q Consensus 660 ~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~ 739 (903)
+++++++...+++ +|++|+|+++++.+++.+++++||+|++++|+|+.|...++..|++++.++++++++|.+|++.++
T Consensus 197 ~~~~~~~~~~~~~-~I~it~G~~eal~~~~~~l~~~Gd~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~ 275 (517)
T PRK13355 197 YAQLKGLPNVDVD-DIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIR 275 (517)
T ss_pred HHHhcCCCCCChh-HEEEeCcHHHHHHHHHHHhCCCCCEEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHH
Confidence 9988766567776 999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred HHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC
Q 043334 740 TILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819 (903)
Q Consensus 740 ~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~ 819 (903)
+++++++ ++++++||| ||||.+++.+++++|+++|++||++||+||+|.++.|++..+ .+ +..+.. +.
T Consensus 276 ~~~~~~~-k~i~i~nP~-NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~--~s----~~~~~~----~~ 343 (517)
T PRK13355 276 SKITSRT-KAIVIINPN-NPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEH--TS----IASLAP----DL 343 (517)
T ss_pred HhcCcCc-eEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCc--cc----HHHhCC----CC
Confidence 9998777 599999998 999999999999999999999999999999999999986542 12 222221 23
Q ss_pred ceEEEccCchhcccccceeeEEEeC--cH---HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 820 NVSLLGGLSLKMLTGALKFGFLVLN--HP---QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 820 ~vI~l~S~SK~~g~~GlRiG~lv~~--~~---~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
.+++++||||+|++||||+||++++ .+ .+++.+..... ..+++.+.|.++..+|. .. ..+++++...++.
T Consensus 344 ~vi~~~S~SK~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~q~a~~~aL~--~~--~~~~~~~~~~~~~ 419 (517)
T PRK13355 344 FCVTFSGLSKSHMIAGYRIGWMILSGNKRIAKDYIEGLNMLANMRLCSNVPAQSIVQTALG--GH--QSVKDYLVPGGRV 419 (517)
T ss_pred eEEEEecchhhccCcccceEEEEeeCchhhHHHHHHHHHHHhcCcCCcChHHHHHHHHHhc--CC--ccHHHHHHHHHHH
Confidence 6888999999999999999999965 32 24555544433 46788999999999994 21 2245677666555
Q ss_pred HHHHHHHHh
Q 043334 894 LESRSKRLK 902 (903)
Q Consensus 894 y~~Rr~~l~ 902 (903)
++ +|++++
T Consensus 420 ~~-~r~~l~ 427 (517)
T PRK13355 420 YE-QRELVY 427 (517)
T ss_pred HH-HHHHHH
Confidence 54 456654
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=348.82 Aligned_cols=297 Identities=15% Similarity=0.195 Sum_probs=239.8
Q ss_pred ccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCC
Q 043334 592 IGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFP 668 (903)
Q Consensus 592 ~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~ 668 (903)
..++.+.+..+...........+.+.++|+.|+|++++|+.+.+++.+.+. .|.+..|.+++|+++++++++.+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~ 84 (393)
T TIGR03538 5 SRLQPYPFEKLAALLAGVTPPASKPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTTKGLPELRQAIARWLERRFDLP 84 (393)
T ss_pred hhCCccHHHHHHHHHHhhhhhcCCCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhCCc
Confidence 344555565555321100013578999999999999999999999887654 37778899999999999999988876
Q ss_pred --CCCCCcEEecCchHHHHHHHHHHhccCCCe--EEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc
Q 043334 669 --IDINAEFIYADCSQSLFNKLVLCCILEGGT--LCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET 744 (903)
Q Consensus 669 --~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~--Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~ 744 (903)
.+++++|++|+|+++++..++.++++|||. |++++|+|+.|...++..|++++.++++++++|.+|++.+++++.+
T Consensus 85 ~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~ 164 (393)
T TIGR03538 85 TGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVWR 164 (393)
T ss_pred ccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHhh
Confidence 566447999999999999999999999986 9999999999999999999999999998777899999999988876
Q ss_pred CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 745 VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 745 ~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... ..+........... ..+++|++
T Consensus 165 ~~-k~i~l~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~vi~i 239 (393)
T TIGR03538 165 RC-QLLFVCSPG-NPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNP-PAGLLQAAAQLGRD--DFRRCLVF 239 (393)
T ss_pred cc-eEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCC-CcCHHHhccccccc--ccccEEEE
Confidence 55 589999997 999999999999999999999999999999999988875211 01111111111100 02589999
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+||||.|++||+|+||++++++ +++.+.++.. ..+++.+.|.++...+. + ++++++.++.|++|++.+.
T Consensus 240 ~S~SK~~~~~GlRvG~~i~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~------~~~~~~~~~~~~~~~~~~~ 310 (393)
T TIGR03538 240 HSLSKRSNLPGLRSGFVAGDAE-ILKAFLRYRTYHGCAMPIPTQLASIAAWN--D------EQHVRENRALYREKFAAVL 310 (393)
T ss_pred ecchhhcCCcccceEEEecCHH-HHHHHHHHHHhhccCcCHHHHHHHHHHhc--C------hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 9998887765 55788899999888883 2 2678888999999998775
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=349.88 Aligned_cols=295 Identities=15% Similarity=0.160 Sum_probs=240.5
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
++++..+..+.+..+..+..+ .+..++++|+|+.|+|++++|+.+.+++.+.+. .|.+..|.+++|++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~ 82 (405)
T PRK09148 4 FHRIRRLPPYVFEQVNRLKAA-ARAAGADIIDLGMGNPDLPTPQHIVDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYA 82 (405)
T ss_pred hhhhhcCCccHHHHHHHHHHH-HHhcCCCeEEcCCCCCCCCCCHHHHHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHH
Confidence 445556666666665533211 123577899999999999888888888877653 36667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+++|.+.+++++|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|..++++..+..
T Consensus 83 ~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~l~~~~~~~ 162 (405)
T PRK09148 83 RRFGVKLNPDTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEEFFPALERAVRHS 162 (405)
T ss_pred HHhCCCCCCCCcEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCCCccCHHHHHhhc
Confidence 88898877765899999999999999999999999999999999999999999999999999986666655655544433
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|| ||||.++|.+++++|+++|++++++||+||+|.++.|++... .+ +..++... +++|
T Consensus 163 ~~~~-~~v~l~~P~-NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~--~s----~~~~~~~~---~~~i 231 (405)
T PRK09148 163 IPKP-IALIVNYPS-NPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPP--PS----VLQVPGAK---DVTV 231 (405)
T ss_pred cccc-eEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCC--CC----hhhCCCcc---CcEE
Confidence 3445 589999998 999999999999999999999999999999999998876432 11 22233222 4789
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||+++++. +++++.+++. ..+++++.|.++..+|+ +. +++++++++.|++|++.
T Consensus 232 ~~~SfSK~~~~pGlR~G~~v~~~~-~i~~l~~~~~~~~~~~~~~~q~~~~~~L~--~~-----~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 232 EFTSMSKTFSMAGWRMGFAVGNER-LIAALTRVKSYLDYGAFTPIQVAATAALN--GP-----QDCIAEMRELYKKRRDV 303 (405)
T ss_pred EEeccccccCCcchheeeeeCCHH-HHHHHHHHHHHhccCCChHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9999988765 56788999999999994 22 36888999999999998
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 304 l~ 305 (405)
T PRK09148 304 LV 305 (405)
T ss_pred HH
Confidence 75
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=354.55 Aligned_cols=272 Identities=14% Similarity=0.216 Sum_probs=230.4
Q ss_pred CCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 612 TPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
..++++|+|++|+|+ +.+|+.+.+++.+++.. |.+..|.+++|+++++++.+.+|...+|+ +|++|+|++
T Consensus 63 ~~~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~-~I~it~G~~ 141 (462)
T PLN02187 63 DVNKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPE-DIFLTAGCN 141 (462)
T ss_pred CCCCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcc-cEEEeCCHH
Confidence 567889999999998 55778888888887653 55677899999999999998889888887 999999999
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+++..++.++++|||.|++++|+|+.|...++..|++++.+++.++++|.+|++.+++++++++ ++++++||| ||||.
T Consensus 142 ~al~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~-~~v~i~nP~-NPTG~ 219 (462)
T PLN02187 142 QGIEIVFESLARPNANILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENT-VAMVVINPN-NPCGN 219 (462)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCc-EEEEEeCCC-CCCCC
Confidence 9999999999999999999999999999999999999999999766789999999999887766 599999998 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+... .++|+++||||+|++||||+||++
T Consensus 220 v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~--~s----~~~~~~~----~~vi~l~SfSK~f~~pGlRiG~~v 289 (462)
T PLN02187 220 VYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPF--VS----MGKFASI----VPVLTLAGISKGWVVPGWKIGWIA 289 (462)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc--ee----HHHhccC----CcEEEEecchhhcCCccceeEEEE
Confidence 9999999999999999999999999999999976532 11 2223322 379999999999999999999999
Q ss_pred eCcH-H---HHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 843 LNHP-Q---LVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 843 ~~~~-~---li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++ . +++.+..++. ..+++.+.|.++..+|+ +. .++|++++++.|++|++++.
T Consensus 290 ~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~--~~----~~~~l~~~~~~l~~~r~~l~ 351 (462)
T PLN02187 290 LNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILE--KA----DKNFFAKKNKILKHNVDLVC 351 (462)
T ss_pred ecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHh--cC----cHHHHHHHHHHHHHHHHHHH
Confidence 8542 2 2345555443 23568999999999994 22 14789999999999998875
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=348.94 Aligned_cols=272 Identities=16% Similarity=0.221 Sum_probs=225.3
Q ss_pred cCCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 611 ETPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
...++++|+|++|+|+ +++|+.+.+++.+++.. |.+..|.+++|+++++++.+.+|.+.+++ +|++|+|+
T Consensus 28 ~~~~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~-~I~it~G~ 106 (409)
T PLN00143 28 EDDHRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPD-DVYLTLGC 106 (409)
T ss_pred cCCCCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHh-hEEEecCh
Confidence 3578899999999998 89999999998887653 66778999999999999999889888877 99999999
Q ss_pred HHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 682 QSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
++++..++.++++|||.|++++|+|+.|...++..|++++.++++++++|.+|++++++++++++ ++++++||| ||||
T Consensus 107 ~~al~~~~~~l~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~~~nP~-NPTG 184 (409)
T PLN00143 107 KHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENT-IAMVIINPG-NPCG 184 (409)
T ss_pred HHHHHHHHHHHcCCCCEEEEcCCCCcCHHHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCC-EEEEEECCC-CCCC
Confidence 99999999999999999999999999999999999999999999766789999999999887666 589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.++|.+++++|+++|++++++||+||+|.++.|++... .+ +..+... +++|+++||||.|++||||+||+
T Consensus 185 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~--~~----~~~~~~~----~~vi~~~SfSK~f~~pGlRvG~~ 254 (409)
T PLN00143 185 SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPF--VP----MGLFASI----VPVITLGSISKRWMIPGWGLGWL 254 (409)
T ss_pred CccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCC--cc----hhhhccc----CcEEEEccchhhcCCCccceEEE
Confidence 99999999999999999999999999999999976432 11 2222222 48999999999999999999999
Q ss_pred EeC-cHHH------HHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 842 VLN-HPQL------VDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 842 v~~-~~~l------i~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++ ++.+ ++.+.+... ...++.+.|.++..+|. ++. ..++++.++.++++++.+
T Consensus 255 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~~----~~~~~~~~~~~~~~~~~~ 316 (409)
T PLN00143 255 VTCDPSGLLQICEIADSIKKALNPAPFPPTFIQAAIPEILE--KTT----EDFFSKTINILRAALAFC 316 (409)
T ss_pred EeeCchhhhhhHHHHHHHHHHHhccCCCCchHHHHHHHHHh--cCh----HHHHHHHHHHHHHHHHHH
Confidence 994 3223 344444432 33457899999999994 211 245556666666665544
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=351.88 Aligned_cols=273 Identities=14% Similarity=0.162 Sum_probs=226.1
Q ss_pred CCCCCeEEccCCCC---CCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQS---FLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..+.+++++++|+| ++++|+.+.+++.+.+. .|.+..|.+++|+++++++++++|++.+|+ +|++|+|+++
T Consensus 29 ~~g~~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~I~it~G~~~ 107 (433)
T PRK06855 29 KLGVKITWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DIIFFNGLGD 107 (433)
T ss_pred hccccccccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh-HEEEcCcHHH
Confidence 45678999999999 67899999988888764 266678999999999999999889988887 9999999999
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHH-HHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-CCcEEEEECCCCCCcc
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAA-RFLKANIVNIPTESEVGFKMTEKTLVTILETV-KKPWVYISGPTINPTG 761 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~-~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG 761 (903)
++..++. +++|||.|++++|+|+.|.... ...|++++.++++++++|.+|++++++.++.. ..+++++++|+ ||||
T Consensus 108 al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~-NPTG 185 (433)
T PRK06855 108 AIAKIYG-LLRREARVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPD-NPTG 185 (433)
T ss_pred HHHHHHH-hcCCCCeEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCC-CCCC
Confidence 9999875 7899999999999999987653 45699999999987678999999999998642 23589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.++|.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.. +.++|+++||||+|++||||+||+
T Consensus 186 ~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~--~s----l~~~~~----~~~~I~~~S~SK~~~~pGlRiG~i 255 (433)
T PRK06855 186 AVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKT--VP----LSEVIG----DVPGIALKGISKELPWPGSRCGWI 255 (433)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--CC----HHHHcC----cCCeEEEecCccccCCCcceEEEE
Confidence 99999999999999999999999999999999976532 12 222221 136899999999999999999999
Q ss_pred EeCc----H---HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 842 VLNH----P---QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 842 v~~~----~---~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++ . .+++.+..... ..+++++.|.++..+|. ++ .++++++++++.|++|+++++
T Consensus 256 i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~--~~---~~~~~~~~~~~~~~~r~~~~~ 319 (433)
T PRK06855 256 EVYNADKDEVFKKYINSILNAKMIEVCSTTLPQMAIPRIMS--HP---EYKNYLKERNKRYEKRSNIAY 319 (433)
T ss_pred EEeCCchhhHHHHHHHHHHHhhccccCCChHHHHHHHHhhc--CC---cHHHHHHHHHHHHHHHHHHHH
Confidence 9842 2 24444444332 45678999999999994 33 346899999999999999875
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=348.22 Aligned_cols=273 Identities=15% Similarity=0.273 Sum_probs=235.1
Q ss_pred cCCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 611 ETPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
+..+.++|+|++|+|+ +++|+.+.+++.+++.. |.+..|.+++|+++++++.+.+|...+++ +|++|+|+
T Consensus 27 ~~~~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~ 105 (409)
T PLN02656 27 EENGKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLD-DVFITSGC 105 (409)
T ss_pred cccCCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc-cEEEeCCh
Confidence 3578899999999998 78899999998887653 55677999999999999999889888877 99999999
Q ss_pred HHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 682 QSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
++++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+|++.+++.+++++ +++++++|+ ||||
T Consensus 106 ~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~-~~v~l~~P~-NPtG 183 (409)
T PLN02656 106 TQAIDVALSMLARPGANILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNT-VALVIINPG-NPCG 183 (409)
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCc-eEEEEECCC-CCCC
Confidence 99999999999999999999999999999999999999999999766789999999999887766 589999998 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.++|.+++++|+++|++++++||+||+|.++.|++... .+ +..++.. .++|+++||||+|++||||+||+
T Consensus 184 ~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~~----~~vi~~~SfSK~f~~pGlRiG~~ 253 (409)
T PLN02656 184 NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPF--VP----MGVFGSI----VPVLTLGSLSKRWIVPGWRLGWF 253 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCc--cc----HHHhccc----CcEEEEcccchhccCcceeEEEE
Confidence 99999999999999999999999999999999987532 11 2222222 48999999999999999999999
Q ss_pred EeCc-------HHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 842 VLNH-------PQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 842 v~~~-------~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++ .++++++.+... ..+++.+.|.++..+|. ++. +.++++.++.|++||+.++
T Consensus 254 i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~--~~~----~~~~~~~~~~~~~~r~~~~ 316 (409)
T PLN02656 254 VTTDPSGSFRDPKIVERIKKYFDILGGPATFIQAAVPTILE--QTD----ESFFKKTINILKQSSDICC 316 (409)
T ss_pred EEeCcccccccHHHHHHHHHHHhhhcCCCHHHHHHHHHHHh--cCc----HHHHHHHHHHHHHHHHHHH
Confidence 9952 348888887654 45678999999999994 221 3688899999999998875
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=344.94 Aligned_cols=268 Identities=9% Similarity=0.146 Sum_probs=229.6
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHH----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFA----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+++|+|+.|+|++++++.+.+++.+.+. .|.+..|.+++|+++++++++++|++.+++++|++|+|+++++..++
T Consensus 28 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 28 QHDALNLSQGAPNFAPDPALVEGVARAMRDGHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred hCCeEEcCCCCCCCCCCHHHHHHHHHHHHhCCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 45799999999999989988888877654 36677899999999999999999988765448999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++++|||+|++++|+|..|...++..|++++.++++. ++|.+|++.+++.+++++ +++++++|+ ||||.++|.+++
T Consensus 108 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~-~~v~i~~p~-NPTG~~~s~~~~ 184 (384)
T PRK12414 108 SALVHPGDEVIYFEPSFDSYAPIVRLQGATPVAIKLSP-EDFRVNWDEVAAAITPRT-RMIIVNTPH-NPSATVFSAADL 184 (384)
T ss_pred HHhcCCCCEEEEeCCCccchHHHHHHcCCEEEEEecCc-cccccCHHHHHhhcCccc-EEEEEcCCC-CCCCcCCCHHHH
Confidence 99999999999999999999999999999999999875 468899999999987665 589999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|+++|++||+||+|.++.|++.... + +..++.. .+++|+++||||.||+||+|+||++++++ ++
T Consensus 185 ~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~--~----~~~~~~~---~~~~i~~~SfSK~~~~pGlRiG~~v~~~~-l~ 254 (384)
T PRK12414 185 ARLAQLTRNTDIVILSDEVYEHVVFDGARHH--S----MARHREL---AERSVIVSSFGKSYHVTGWRVGYCLAPAE-LM 254 (384)
T ss_pred HHHHHHHHHCCeEEEEhhhhhhccCCCCCcc--C----cccCcCc---cCcEEEEecccccccCccceEEEEecCHH-HH
Confidence 9999999999999999999999999764321 1 2222222 25899999999999999999999999987 99
Q ss_pred HHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.++.. ..+++.+.|.++..+|. ++ .+..++++.|++||+.++
T Consensus 255 ~~l~~~~~~~~~~~s~~~q~a~~~~l~--~~------~~~~~~~~~~~~~r~~l~ 301 (384)
T PRK12414 255 DEIRKVHQFMVFSADTPMQHAFAEALA--EP------ASYLGLGAFYQRKRDLLA 301 (384)
T ss_pred HHHHHHHhheecCCCcHHHHHHHHHhc--CC------hHHHHHHHHHHHHHHHHH
Confidence 99988764 67789999999999994 33 223457888999998875
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=344.95 Aligned_cols=271 Identities=15% Similarity=0.196 Sum_probs=226.7
Q ss_pred CCCCeEEccCCCCC-CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 613 PNSGLIHMDVDQSF-LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 613 ~~~~~IdLs~g~p~-~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
-+.+.|+|+.|+++ +++|+.+.+++.+++.. |....|.+++|+++++++++++|.+.+++++|++|+|+++++.
T Consensus 37 ~~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~ 116 (405)
T PRK06207 37 LPGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALF 116 (405)
T ss_pred CCCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHH
Confidence 35678999999988 45777888888877643 5667899999999999999999988777239999999999999
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC---CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE---SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~---~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
.++.+++++||+|++++|+|+.+...++..|++++.++++ .+++|.+|++.|++++++++ +++++++|+ ||||.+
T Consensus 117 ~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~-k~v~l~~P~-NPTG~~ 194 (405)
T PRK06207 117 LAVAATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGV-RVFLFSNPN-NPAGVV 194 (405)
T ss_pred HHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhcC-eEEEECCCC-CCCCcC
Confidence 9999999999999999999999999999999999999986 23468899999999987766 589999998 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.... +++|+++||||+|++||+|+||+++
T Consensus 195 ~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~--~~----~~~~~~~~---~~vi~i~SfSK~~~lpGlRiG~ii~ 265 (405)
T PRK06207 195 YSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSY--TH----LRALPIDP---ENVITIMGPSKTESLSGYRLGVAFG 265 (405)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--Cc----hhcCCCCc---CcEEEEecchhhccCcccceEEEEc
Confidence 999999999999999999999999999999977542 11 11122221 5899999999999999999999999
Q ss_pred CcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 844 NHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 844 ~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ +++++.+... ..+.+.+.|.++..+|+ ++ ..++++.++.++++|+.+.
T Consensus 266 ~~~-l~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~~~~~~r~~l~ 318 (405)
T PRK06207 266 SPA-IIDRMEKLQAIVSLRAAGYSQAVLRTWFS--EP-----DGWMKDRIARHQAIRDDLL 318 (405)
T ss_pred CHH-HHHHHHHHHhHhccCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 987 9999988765 55678899999999994 32 1355556666777776654
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=345.52 Aligned_cols=270 Identities=13% Similarity=0.233 Sum_probs=229.4
Q ss_pred CCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.++|+|++|+|. +++|+.+.+++.+++.. |.+..|.+++|+++++++.+.+|.+.+++ +|++|+|++++
T Consensus 51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~v~it~G~~~a 129 (430)
T PLN00145 51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTD-DIYLTAGCAQA 129 (430)
T ss_pred CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChh-hEEEeCCHHHH
Confidence 7789999999995 77889999999888753 55567999999999999998889888877 99999999999
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~ 764 (903)
+.+++.++++|||+|++++|+|+.|...+...|++++.+++.++++|.+|++.+++.+++++ ++++++||| ||||.++
T Consensus 130 l~l~~~~l~~~Gd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~i~i~~P~-NPtG~v~ 207 (430)
T PLN00145 130 IEIIMSVLAQPGANILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENT-VAMVIINPN-NPCGSVY 207 (430)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCc-eEEEEeCCC-CCCCCCC
Confidence 99999999999999999999999999999999999999998777789999999999988777 599999998 9999999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .++|+++||||.|++||||+||++++
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~--~~----~~~~~~~----~~vi~~~S~SK~~~~pG~RlG~iv~~ 277 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLTFGSKPF--VP----MGVFGEV----APVLTLGSISKRWVVPGWRLGWIATC 277 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCc--cc----hhhhccc----CcEEEEeccccccCCCCeeEEEEEEe
Confidence 99999999999999999999999999999976432 11 2223322 48999999999999999999999984
Q ss_pred -cHHHH------HHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 845 -HPQLV------DAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 845 -~~~li------~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.++ +.+..... ..+++++.|.++..+|. ++ .++++++.++.|++|++.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~a~~~~l~--~~----~~~~~~~~~~~~~~~~~~~~ 337 (430)
T PLN00145 278 DPNGILKETKVVDSIRNYLNISTDPATFVQGAIPQIIA--NT----KEEFFTKTLGLLKETADICY 337 (430)
T ss_pred cchhhhhhhHHHHHHHHHhcccCCCCHHHHHHHHHHHh--cC----HHHHHHHHHHHHHHHHHHHH
Confidence 22233 34444433 44678999999999994 22 14788899999999998875
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=341.02 Aligned_cols=268 Identities=17% Similarity=0.244 Sum_probs=231.5
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
++.|+|+.|+|++++++.+.+++.+.+.. |.+..|.+++|+++++++.+.+|+..+++++|++|+|+++++..++.
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGYTSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHH
Confidence 57899999999998888888888776643 65678999999999999999889887776579999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++++|||+|++++|+|+.|...++..|++++.++++.+++|.+|++++++++.+++ +++++++|+ ||||.++|.++++
T Consensus 100 ~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~v~~~~p~-NPtG~~~s~~~~~ 177 (378)
T PRK07682 100 AIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITAKT-KAILLCSPN-NPTGAVLNKSELE 177 (378)
T ss_pred HhCCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCccc-EEEEEECCC-CCcCcCcCHHHHH
Confidence 99999999999999999999999999999999998765678899999999987765 588999997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|+++|++++++||+||+|.++.|++... + +..+.+. .+++++++||||.|++||+|+||++++++ +++
T Consensus 178 ~l~~~~~~~~~~ii~De~y~~~~~~~~~~---~----~~~~~~~---~~~~i~~~S~SK~~~~~GlR~G~~~~~~~-~i~ 246 (378)
T PRK07682 178 EIAVIVEKHDLIVLSDEIYAELTYDEAYT---S----FASIKGM---RERTILISGFSKGFAMTGWRLGFIAAPVY-FSE 246 (378)
T ss_pred HHHHHHHHcCcEEEEehhhhhcccCCCCC---C----hhhcccc---cCCEEEEecCcccccChhhhhhhhhcCHH-HHH
Confidence 99999999999999999999999876432 1 1122222 14899999999999999999999999987 999
Q ss_pred HHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+... ..+++.+.|.++..+|+ ++ +.+++++++.|++|++.+.
T Consensus 247 ~l~~~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~~~ 293 (378)
T PRK07682 247 AMLKIHQYSMMCAPTMAQFAALEALR--AG-----NDDVIRMRDSYRKRRNFFV 293 (378)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHHHH
Confidence 9987654 56788999999999994 33 2568889999999998875
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=342.03 Aligned_cols=295 Identities=17% Similarity=0.223 Sum_probs=245.4
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l 661 (903)
+++|+.+++.+.+..+.. +... ...++++++|+.|.|++++++.+.+++.+.+.. |....|.+++|+++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l 83 (402)
T PRK06107 6 PAARVSRIKPSPSTAAAARAREL--RAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKL 83 (402)
T ss_pred hhHHhhhcCccHHHHHHHHHHHH--HhccCCEEEcCCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Confidence 344555555554444332 2211 245678999999999999888899988887753 666789999999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
++++|.+..++ +|++|+|+++++..++.+++++||.|++++|+|+.|...+...|++++.++++.+++|.+|++.+++.
T Consensus 84 ~~~~g~~~~~~-~i~~t~G~~~al~~~~~~~~~~gd~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 162 (402)
T PRK06107 84 ERRNGLHYADN-EITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAA 162 (402)
T ss_pred HHhcCCCCChh-hEEEeCCHHHHHHHHHHHhcCCCCEEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhh
Confidence 99889988777 99999999999999999999999999999999999999999999999999987667899999999998
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC-CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY-GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~-~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
+.+++ +++++++|+ ||||.++|.+++++|+++|+++ +++||+||+|+++.|++... . ++....++. .++
T Consensus 163 ~~~~~-~~v~l~~p~-NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~--~---~~~~~~~~~---~~~ 232 (402)
T PRK06107 163 ITPRT-RWLILNAPS-NPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPT--P---HLLAAAPEL---RDR 232 (402)
T ss_pred cCcCc-eEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCC--C---CHHHhCcCc---cCC
Confidence 87655 589999998 9999999999999999999998 99999999999999876432 1 122221222 258
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+|+++||||.|++||+|+||++++++ +++++..... ..+++.++|.++..+|. ++ +.++++.++.|++|+
T Consensus 233 vi~~~S~SK~~~~pGlRiG~~~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~ 304 (402)
T PRK06107 233 VLVTNGVSKTYAMTGWRIGYAAGPAD-LIAAINKLQSQSSSCPSSISQAAAAAALN--GD-----QSFVTESVAVYKQRR 304 (402)
T ss_pred EEEEeccchhhcCcccceeeeecCHH-HHHHHHHHHHhcccCCChHHHHHHHHHhc--CC-----hHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 9999988764 67899999999999994 22 368899999999999
Q ss_pred HHHh
Q 043334 899 KRLK 902 (903)
Q Consensus 899 ~~l~ 902 (903)
+.+.
T Consensus 305 ~~~~ 308 (402)
T PRK06107 305 DYAL 308 (402)
T ss_pred HHHH
Confidence 8875
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=338.40 Aligned_cols=269 Identities=15% Similarity=0.165 Sum_probs=222.0
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++++|+.|+|++++++.+.+++.+... .|.+..|.+++|+++++++++++|++.+++ +|++|+|+++++..++
T Consensus 22 ~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~-~I~it~G~~~al~~~~ 100 (374)
T PRK05839 22 KEYKGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKEN-ELIPTFGTREVLFNFP 100 (374)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHH
Confidence 366999999999999999888888876543 366778999999999999999999888877 9999999999999888
Q ss_pred HHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 690 LCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 690 ~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
.+++ .+||.|+++.|+|+.|...++..|+++++++++.+++|.+|....+ + +++ ++++++||| ||||.++|.+
T Consensus 101 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~~--~-~~~-k~v~i~nP~-NPTG~~~s~~ 175 (374)
T PRK05839 101 QFVLFDKQNPTIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEKE--L-QEV-DLVILNSPN-NPTGRTLSLE 175 (374)
T ss_pred HHHhcCCCCCEEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchhh--h-ccc-cEEEEeCCC-CCcCcccCHH
Confidence 8764 4799999999999999999999999999999987778888875543 2 234 599999998 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC-CCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS-TNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~-~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
++++|+++|+++|++||+||+|.++.+++... + ........ .+..+++|+++||||.|++||+|+||++++++
T Consensus 176 ~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~---s---~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~ 249 (374)
T PRK05839 176 ELIEWVKLALKHDFILINDECYSEIYENTPPP---S---LLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDAS 249 (374)
T ss_pred HHHHHHHHHHHcCCEEEeccchhhcccCCCCC---C---HhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHH
Confidence 99999999999999999999999876543321 1 11111000 00014899999999999999999999999876
Q ss_pred HHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 847 QLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 847 ~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++.+... ..+.+.+.|.++..+|. + +++++++++.|++|++++.
T Consensus 250 -~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~------~~~~~~~~~~~~~~~~~~~ 298 (374)
T PRK05839 250 -ILKKYKAYRTYLGCASPLPLQKAAAVAWL--D------DEHAEFFRNIYAKNLKLAR 298 (374)
T ss_pred -HHHHHHHHHhhcCCCCChHHHHHHHHHhc--c------chHHHHHHHHHHHHHHHHH
Confidence 9999887754 46788899999988883 2 2678888999999998875
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=343.05 Aligned_cols=267 Identities=18% Similarity=0.221 Sum_probs=230.2
Q ss_pred CCeEEccCCCCCCC--CcHHHHHHHHHHHH--------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 615 SGLIHMDVDQSFLP--IPSLVKAAIFESFA--------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 615 ~~~IdLs~g~p~~~--~p~~v~~al~~al~--------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+..++|+.|.|+.. +-....+++...++ .|....|.+++|+++++++....|+.++++ +|++|+|++++
T Consensus 89 ~~~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~-~IiiT~G~q~a 167 (459)
T COG1167 89 PSVIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPE-QIVITSGAQQA 167 (459)
T ss_pred CceecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcC-eEEEeCCHHHH
Confidence 78999999987654 23334444444432 355668999999999999997799999988 99999999999
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC-CCCcccC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT-INPTGLL 763 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~-~NPTG~v 763 (903)
+.+++..+++|||+|++++|+|.....+++..|+++++||+++ +| +|+++|++.+...++ -+++++|+ |||||.+
T Consensus 168 l~l~~~~l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~-~G--~~~e~le~~~~~~~~-k~~y~~P~~qNPtG~t 243 (459)
T COG1167 168 LDLLLRLLLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDE-DG--IDPEALEEALAQWKP-KAVYVTPTFQNPTGVT 243 (459)
T ss_pred HHHHHHHhCCCCCEEEEcCCCcHHHHHHHHHcCCcEEecCCCC-CC--CCHHHHHHHHhhcCC-cEEEECCCCCCCCCCc
Confidence 9999999999999999999999999999999999999999985 44 999999999987654 56677788 9999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
||.+++++|+++|++||++||+||+|+++.|++.+.+ .+..++. .++||+++||||++. ||+|+||+++
T Consensus 244 ms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~------~l~~ld~----~~rViy~gSFSK~l~-PglRlG~vv~ 312 (459)
T COG1167 244 MSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP------PLKALDA----PGRVIYLGSFSKTLA-PGLRLGYVVA 312 (459)
T ss_pred cCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC------ChHhhCC----CCCEEEEeeehhhcc-cccceeeeeC
Confidence 9999999999999999999999999999999977631 2333333 269999999999995 9999999999
Q ss_pred CcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHhC
Q 043334 844 NHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 844 ~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
|+. +++.+...+. +.+++.++|.++...+. +| .+++|+.++|+.|++||+++.+
T Consensus 313 p~~-~~~~~~~~k~~~~~~~s~~~Q~~la~~l~--~G---~~~~hl~~lR~~y~~rr~~l~~ 368 (459)
T COG1167 313 PPE-LIEKLLRLKQAADLGPSSLSQAALAAFLL--SG---HYDRHLRRLRREYARRRDALLE 368 (459)
T ss_pred CHH-HHHHHHHHHHHhcCCCChHHHHHHHHHHH--cC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 998 9999988765 88899999999999994 44 4789999999999999999863
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=339.28 Aligned_cols=290 Identities=12% Similarity=0.185 Sum_probs=244.6
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++..+..+.++.+.... .+.++|+|+.|.|++++++.+.+++.+.+.. |....|.+++|++++++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~~a~~l~ 81 (386)
T PRK09082 8 PQSKLPNVGTTIFTVMSALA------AEHGAINLSQGFPDFDGPPYLVEALAYAMAAGHNQYPPMTGVAALREAIAAKTA 81 (386)
T ss_pred hhhHhhccCccHHHHHHHHH------hhCCEEEecCCCCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 45566667777666665422 2357899999999998888888888887643 5566789999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+++.+|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++. ++|.+|++++++.+
T Consensus 82 ~~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~ 160 (386)
T PRK09082 82 RLYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQP-PDFRVDWQRFAAAI 160 (386)
T ss_pred HHhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccccCCHHHHHHhc
Confidence 98998877655799999999999999999999999999999999999999999999999999975 46889999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.+.. +++|
T Consensus 161 ~~~~-~~v~l~~p~-NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~--~s----~~~~~~~~---~~~i 229 (386)
T PRK09082 161 SPRT-RLIILNTPH-NPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGH--AS----VLRHPELR---ERAF 229 (386)
T ss_pred Cccc-eEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCC--CC----hhhCcCcc---CcEE
Confidence 8766 589999997 999999999999999999999999999999999999976432 11 22222222 5899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||++++++ +++.+.+... ..+++.+.|.++..+|. +. +++++++++.|++|+++
T Consensus 230 ~~~S~SK~~~~~G~RiG~iv~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 301 (386)
T PRK09082 230 VVSSFGKTYHVTGWKVGYCVAPAA-LSAEFRKVHQYNTFTVNTPAQLALADYLR--AE-----PEHYLELPAFYQAKRDR 301 (386)
T ss_pred EEeechhhccchhhhhhhhhCCHH-HHHHHHHHHhhhcCCCChHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9999988764 67789999999999984 22 36788899999999998
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 302 ~~ 303 (386)
T PRK09082 302 FR 303 (386)
T ss_pred HH
Confidence 75
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.15 Aligned_cols=291 Identities=15% Similarity=0.220 Sum_probs=241.9
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~ 663 (903)
++++.++..+.+..+...... .+..++++++|+.|+|++++++.+.+++.+.+.. |....|.+++|+++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 82 (388)
T PRK07337 4 AARVDAIEPFYVMELAKEAQA-LERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSALGLAPLREAIAAWYAR 82 (388)
T ss_pred hhHhHhcCchHHHHHHHHHHH-HHhcCCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 444555555556555532110 1246778999999999998888888888877643 55567899999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+|+..+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++.+++|.+|++++++.++
T Consensus 83 ~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 161 (388)
T PRK07337 83 RFGLDVAPE-RIVVTAGASAALLLACLALVERGDEVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG 161 (388)
T ss_pred HhCCCCChH-hEEEecCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC
Confidence 899888877 9999999999999999999999999999999999999999999999999999866678999999999998
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ +++++++|+ ||||.+++.+++++|+++|++++++||+||+|.++.|++... + ... +. +++|+
T Consensus 162 ~~~-~~v~l~~p~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~---~---~~~-~~------~~vi~ 226 (388)
T PRK07337 162 ERT-RGVLLASPS-NPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPV---S---ALS-LG------DDVIT 226 (388)
T ss_pred ccc-eEEEEECCC-CCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc---C---hhh-cc------CCEEE
Confidence 776 589999998 999999999999999999999999999999999888865432 1 111 11 47999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||+||+|+||++++++ +++.+.+... ..+++.+.|.++..++. ++. .+++.+.++.|++||+.+
T Consensus 227 ~~S~SK~~~~~G~RiG~~~~~~~-l~~~l~~~~~~~~~~~s~~~q~~~~~~l~--~~~----~~~~~~~~~~~~~~r~~~ 299 (388)
T PRK07337 227 INSFSKYFNMTGWRLGWLVVPEA-LVGTFEKLAQNLFICASALAQHAALACFE--PDT----LAIYERRRAEFKRRRDFI 299 (388)
T ss_pred EEechhhcCCchhheeeeecCHH-HHHHHHHHHHHhccCCChHHHHHHHHHhc--cCc----hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 9999887764 55788999999999983 221 234577899999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
+
T Consensus 300 ~ 300 (388)
T PRK07337 300 V 300 (388)
T ss_pred H
Confidence 5
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=347.49 Aligned_cols=280 Identities=20% Similarity=0.310 Sum_probs=225.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHH----------------HHccCCCCCchHHHHHHHHHHHhhcCCC--CCCCCc
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFES----------------FARQNMSESEIDVTPSIQQYIKSNFGFP--IDINAE 674 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~a----------------l~~y~~~~G~~~lr~ala~~l~~~~G~~--~~pe~~ 674 (903)
.+.+.|+|++++|.++. +.+.+.+... +..|....|.++||+++++++.+++|.. .+++ +
T Consensus 36 ~p~g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~-~ 113 (468)
T PLN02450 36 NPSGIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPN-K 113 (468)
T ss_pred CCCeeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChH-H
Confidence 34579999999998765 4454444432 1236667899999999999999887743 5776 9
Q ss_pred EEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCc
Q 043334 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKP 748 (903)
Q Consensus 675 I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~ 748 (903)
|++|+|+++++..++.++++|||.|++++|+|+.|...+. ..|+++++++++.+++|.+|++.+++++.+ .+.+
T Consensus 114 Iiit~Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k 193 (468)
T PLN02450 114 LVLTAGATSANETLMFCLAEPGDAFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVK 193 (468)
T ss_pred eEEccChHHHHHHHHHHhCCCCCEEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCee
Confidence 9999999999999999999999999999999999988887 589999999998667899999999988764 1335
Q ss_pred EEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh--hccCCCCCCceEEEcc
Q 043334 749 WVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK--LYSSTNSSFNVSLLGG 826 (903)
Q Consensus 749 ~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~--l~~~~~~~~~vI~l~S 826 (903)
++++|||+ ||||.++|.+++++|+++|++++++||+||+|+++.|++... .+..+.... +.+. +..+++++++|
T Consensus 194 ~v~l~nP~-NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~--~s~l~~~~~~~~~~~-~~~~~vi~l~S 269 (468)
T PLN02450 194 GVLITNPS-NPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGF--VSVMEVLKDRKLENT-DVSNRVHIVYS 269 (468)
T ss_pred EEEEecCC-CCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCc--ccHHHHhhhcccccC-CCCCcEEEEEe
Confidence 89999998 999999999999999999999999999999999999976432 221111110 0000 00258999999
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|||.||+||+|+||++++++.+++++.+.....+++.++|.++..+|. ++ ....+++++.++.|++|++.++
T Consensus 270 ~SK~~~l~GlRiG~li~~~~~l~~~~~~~~~~~~~s~~~Q~a~~~~L~--~~--~~~~~~l~~~~~~l~~rr~~l~ 341 (468)
T PLN02450 270 LSKDLGLPGFRVGAIYSNDEMVVSAATKMSSFGLVSSQTQYLLSALLS--DK--KFTKNYLEENQKRLKQRQKKLV 341 (468)
T ss_pred ccccCCCCCccEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--Cc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999775677777765555689999999999994 33 1123578889999999999875
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=336.00 Aligned_cols=289 Identities=19% Similarity=0.245 Sum_probs=242.0
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~ 663 (903)
+.++..+..+.++.+.... ...++.|+|+.|.|.+++++.+.+++.+.+.. |.+..|.+++|+++++++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~ 80 (387)
T PRK07683 6 NPRVKDIQISGIRQFSNMV-----QNYDNLISLTIGQPDFPTPSHVKEAAKRAITENYTSYTHNAGLLELRKAACNFVKD 80 (387)
T ss_pred hHHHHhCCccHHHHHHHHH-----HhcCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4455666666676655432 23467899999999988888888998887753 55678899999999999998
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+|+..+++++|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++. ++|.+|.+.+++.++
T Consensus 81 ~~g~~~~~~~~I~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~~ 159 (387)
T PRK07683 81 KYDLHYSPESEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRS-TGFRLTAEALENAIT 159 (387)
T ss_pred HhCCCCCCCCcEEEeCChHHHHHHHHHHhCCCCCEEEEcCCCccchHHHHHHcCCEEEEeecCc-ccCCCCHHHHHHhcC
Confidence 8898877766899999999999999999999999999999999999999999999999999874 578899999999887
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... + +..+.+.+ +++|+
T Consensus 160 ~~~-~~i~i~~p~-NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~------~-~~~~~~~~---~~vi~ 227 (387)
T PRK07683 160 EKT-RCVVLPYPS-NPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT------S-IAHFPEMR---EKTIV 227 (387)
T ss_pred cCc-eEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcC------C-hhhccCCc---CCeEE
Confidence 766 589999998 999999999999999999999999999999999988876442 1 12222222 48999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||+||+|+||++++++ +++++.+... ..+++.+.|.++..+|. ++ ..+++++++.|++|++.+
T Consensus 228 ~~s~SK~~~~pGlRiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~~ 299 (387)
T PRK07683 228 INGLSKSHSMTGWRIGFLFAPSY-LAKHILKVHQYNVTCASSISQYAALEALT--AG-----KDDAKMMRHQYKKRRDYV 299 (387)
T ss_pred EeeccccccCccceeEEEEcCHH-HHHHHHHHHHhccCCCChHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 9999887643 45677889999999994 44 256788888899998877
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 300 ~ 300 (387)
T PRK07683 300 Y 300 (387)
T ss_pred H
Confidence 5
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=335.99 Aligned_cols=290 Identities=14% Similarity=0.176 Sum_probs=241.3
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH----ccCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~----~y~~~~G~~~lr~ala~~l~ 662 (903)
+++++.+++.+.+..+..... .++.++|+.|.|+.+.|+.+.+++.+.+. .|.+..|.+++|+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 77 (387)
T PRK08912 4 GNPVFADLPTTIFEVMSQLAR------EHGAINLGQGFPDDPGPEDVRRAAADALLDGSNQYPPMMGLPELRQAVAAHYA 77 (387)
T ss_pred hhHHHhhCCCCHHHHHHHHHh------hCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 455666677777766665322 35789999999998878888888777653 26667899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|++.+|+.+|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++. ++|.+|++.+++.+
T Consensus 78 ~~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~~ 156 (387)
T PRK08912 78 RFQGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIRRAGGVPRLVRLEP-PHWRLPRAALAAAF 156 (387)
T ss_pred HHhCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCc-ccCcCCHHHHHHHh
Confidence 98998888766899999999999999999999999999999999999999999999999999864 46789999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ +++++++|+ ||||.++|.+++++|+++|++++++||+||+|.++.|++... .+ +..+++.. +++|
T Consensus 157 ~~~~-~~v~l~~p~-NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~~~---~~~i 225 (387)
T PRK08912 157 SPRT-KAVLLNNPL-NPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRH--IP----LMTLPGMR---ERTV 225 (387)
T ss_pred Cccc-eEEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCC--cC----hhhCCCcc---CceE
Confidence 7766 589999997 999999999999999999999999999999999998876432 11 11222221 4899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||++|+|+||++++++ +++.+.+... ..+.+...|.++..+|. +. .++++++++.|++|++.
T Consensus 226 ~~~S~SK~~g~~GlRiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 297 (387)
T PRK08912 226 KIGSAGKIFSLTGWKVGFVCAAPP-LLRVLAKAHQFLTFTTPPNLQAAVAYGLG--KP-----DDYFEGMRADLARSRDR 297 (387)
T ss_pred EEeechhhccCcCceeEEEecCHH-HHHHHHHHHhhccccCChHHHHHHHHHHh--CC-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9998887654 45667778999988884 22 36778889999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 298 l~ 299 (387)
T PRK08912 298 LA 299 (387)
T ss_pred HH
Confidence 75
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=336.95 Aligned_cols=272 Identities=16% Similarity=0.291 Sum_probs=230.1
Q ss_pred CCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhc------CCCCCCCCcEE
Q 043334 612 TPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNF------GFPIDINAEFI 676 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~------G~~~~pe~~I~ 676 (903)
..++++|+|+.|.|+ +.+++.+.+++.+.+.. |....|.+++|+++++++.+.+ |...+++ +|+
T Consensus 30 ~~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~-~i~ 108 (412)
T PTZ00433 30 PSPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD-NVV 108 (412)
T ss_pred CCCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh-hEE
Confidence 477899999999987 45788899988877652 6666799999999999998765 3556666 999
Q ss_pred ecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 677 YADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 677 vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+|+|+++++..++.+++++||+|+++.|+|+.|...++..|++++.++++.+++|.+|++.+++.+++++ +++++++||
T Consensus 109 it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~-~~i~~~~p~ 187 (412)
T PTZ00433 109 LCSGVSHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRT-KALIMTNPS 187 (412)
T ss_pred EeCChHHHHHHHHHHhcCCCCEEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCc-eEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999999876678999999999887765 589999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .++|+++||||+||+||+
T Consensus 188 -NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~~----~~~i~~~SfSK~~~~pGl 256 (412)
T PTZ00433 188 -NPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATF--TS----VADFDTT----VPRVILGGTAKNLVVPGW 256 (412)
T ss_pred -CCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCc--cc----hhhccCC----CceEEEccchhhcCCCCe
Confidence 999999999999999999999999999999999998876432 11 2223221 368999999999999999
Q ss_pred eeeEEEe--C---cHHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 837 KFGFLVL--N---HPQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 837 RiG~lv~--~---~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+||+++ + .+++++.+.++.. ..++++++|.++..+|. ++ .+.+++++++.|++|++.++
T Consensus 257 RlG~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~----~~~~~~~~~~~~~~~r~~l~ 322 (412)
T PTZ00433 257 RLGWLLLVDPHGNGGDFLDGMKRLGMLVCGPCSVVQAALGEALL--NT----PQEHLEQIVAKLEEGAMVLY 322 (412)
T ss_pred eEEEEEEeCCcccHHHHHHHHHHHhhccCCCChHHHHHHHHHHh--cC----cHHHHHHHHHHHHHHHHHHH
Confidence 9999997 2 1337888877654 46789999999999994 22 24788999999999998875
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=338.08 Aligned_cols=297 Identities=11% Similarity=0.060 Sum_probs=224.7
Q ss_pred hccCCCCHHHHHHHHhhhhccCCCCCeEEccCCC---CCCCCc--HHHHHHHHHHHH-----ccCCCCCchHHHHHHHHH
Q 043334 591 MIGFSRSAISVLNSAELSITETPNSGLIHMDVDQ---SFLPIP--SLVKAAIFESFA-----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 591 ~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~---p~~~~p--~~v~~al~~al~-----~y~~~~G~~~lr~ala~~ 660 (903)
+..++.+.+..+..... ....+++|+|+.|. ++..+| +.+.+++.+.+. .|.+..|.+++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~ 81 (396)
T PRK09257 5 LEAAPADPILGLMEAFR---ADPRPDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQEL 81 (396)
T ss_pred CCCCCCChHHHHHHHHh---hCCCcCcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHH
Confidence 34556666666554222 12345789999996 433444 677888777653 377788999999999999
Q ss_pred HHhhcCCCCCCCCcE--EecCchHHHHHHHHHHh--ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHH
Q 043334 661 IKSNFGFPIDINAEF--IYADCSQSLFNKLVLCC--ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEK 736 (903)
Q Consensus 661 l~~~~G~~~~pe~~I--~vt~Gs~~al~~ll~~l--~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~ 736 (903)
+.+..+...+++ +| ++|+|+++++..+++.+ ++|||+|++++|+|+.|..+++..|++++.+|+..+++|.+|++
T Consensus 82 ~~~~~~~~~~~~-~i~v~iT~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~ 160 (396)
T PRK09257 82 LFGADSPALAAG-RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGLEVKTYPYYDAATKGLDFD 160 (396)
T ss_pred hcCCCCcccccC-eEEEEecCCccHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCCcEEEEeccccccCccCHH
Confidence 987655555666 66 99999999999998665 58999999999999999999999999999999854456889999
Q ss_pred HHHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC
Q 043334 737 TLVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS 814 (903)
Q Consensus 737 ~L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~ 814 (903)
.+++.++.. .+.++++++|| ||||.++|.+++++|+++|+++|++||+||+|.++.|+.... . ..+..+...
T Consensus 161 ~l~~~~~~~~~~~~~~i~~~p~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~----~-~~~~~~~~~ 234 (396)
T PRK09257 161 AMLADLSQAPAGDVVLLHGCCH-NPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEED----A-YGLRAFAAA 234 (396)
T ss_pred HHHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHH----H-HHHHHHHhc
Confidence 999887632 22355557886 999999999999999999999999999999999988752210 0 112223322
Q ss_pred CCCCCceEEEccCchhcccccceeeEEEe--Cc-H---HHHHHHHhCCC--CCCCcHHHHHHHHHHHhccccc-chhHHH
Q 043334 815 TNSSFNVSLLGGLSLKMLTGALKFGFLVL--NH-P---QLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERK-ARDLMN 885 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~-~---~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~-~~~~~~ 885 (903)
.+++|+++||||+|+++|||+||+++ ++ + .++..+..... ..+++.+.|.++..+|. ++. .+.+++
T Consensus 235 ---~~~vi~i~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~ 309 (396)
T PRK09257 235 ---GLELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILN--DPELRAEWEA 309 (396)
T ss_pred ---CCcEEEEEEcCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhC--CHHHHHHHHH
Confidence 14899999999999999999999984 33 2 14444444332 55678999999999994 331 123468
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043334 886 AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 886 ~l~~~r~~y~~Rr~~l~ 902 (903)
+++++++.|++||+.++
T Consensus 310 ~~~~~r~~~~~rr~~l~ 326 (396)
T PRK09257 310 ELEEMRERIKAMRQLLV 326 (396)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999999886
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=331.78 Aligned_cols=288 Identities=18% Similarity=0.237 Sum_probs=239.0
Q ss_pred hhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhc
Q 043334 590 EMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNF 665 (903)
Q Consensus 590 ~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~ 665 (903)
++.+...+.++.+..... ..+++|+|+.|+|++++++.+.+++.+.+.. |.+..|.+++|+++++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~la~~~~~~~ 78 (382)
T PRK06108 4 AARALPESGIREVANAGR-----GREGVLPLWFGESDLPTPDFIRDAAAAALADGETFYTHNLGIPELREALARYVSRLH 78 (382)
T ss_pred hhhhCCchHHHHHHHHHh-----ccCCeEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 344455556666654322 2357899999999999999999998887653 6667899999999999999988
Q ss_pred CCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC-CCcccCHHHHHHHhhc
Q 043334 666 GFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE-VGFKMTEKTLVTILET 744 (903)
Q Consensus 666 G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~l~~ 744 (903)
|...+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.+|++.+ ++|.+|++.+++.+++
T Consensus 79 ~~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~ 157 (382)
T PRK06108 79 GVATPPE-RIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP 157 (382)
T ss_pred CCCcCcc-eEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc
Confidence 9777776 9999999999999999999999999999999999999999999999999999753 4688999999998876
Q ss_pred CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccC-CCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 745 VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN-YEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 745 ~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~-~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|+++.|+ +... . +... +... .+++++
T Consensus 158 ~~-~~i~l~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~--~---~~~~-~~~~---~~~~i~ 226 (382)
T PRK06108 158 RT-RALFINSPN-NPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRA--P---SFLD-IAEP---DDRIIF 226 (382)
T ss_pred cc-eEEEEECCC-CCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCC--C---CHhh-cCCC---cCCEEE
Confidence 65 589999997 99999999999999999999999999999999999886 2221 1 1122 2111 258999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||++|+|+||++++++ +++.+.+... ..+++.+.|.++..+|. ++ .++++++++.++++++.+
T Consensus 227 ~~S~SK~~g~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 298 (382)
T PRK06108 227 VNSFSKNWAMTGWRLGWLVAPPA-LGQVLEKLIEYNTSCVAQFVQRAAVAALD--EG-----EDFVAELVARLRRSRDHL 298 (382)
T ss_pred EeechhhccCcccceeeeeCCHH-HHHHHHHHHHhcccCCChHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887 8888876643 56788999999999994 33 356778888888888876
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 299 ~ 299 (382)
T PRK06108 299 V 299 (382)
T ss_pred H
Confidence 5
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=334.66 Aligned_cols=291 Identities=17% Similarity=0.244 Sum_probs=245.1
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++..+....++.+..... ..+++|+|+.|+|++++++.+.+++.+++.. |.+..|.+++|+++++++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 84 (391)
T PRK08361 10 IAGRINLIQRSKIRELFERAS-----KMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYK 84 (391)
T ss_pred hhHHHHhCCccHHHHHHHHHH-----hhcCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 566776666666766654432 2357899999999998888888888887653 6567899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.+++++||.|++++|+|+.+...++..|++++.+|++.+++|.+|++.+++.+
T Consensus 85 ~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~g~~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i 163 (391)
T PRK08361 85 KFYGVDVDVD-NVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELI 163 (391)
T ss_pred HHhCCCCCcc-cEEEeCChHHHHHHHHHHhcCCCCEEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc
Confidence 8888887777 999999999999999999999999999999999999999999999999999987667899999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.+++.+++++|+++|++++++||+||+|.++.|++... . +... +.. ++++
T Consensus 164 ~~~~-~~v~i~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~---~~~~-~~~-----~~~i 230 (391)
T PRK08361 164 TKRT-RMIVINYPN-NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKH--Y---PMIK-YAP-----DNTI 230 (391)
T ss_pred cccc-EEEEEeCCC-CCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCC--C---CHhh-cCC-----CCEE
Confidence 8766 589999998 999999999999999999999999999999999988865432 1 1111 111 4799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||++|+|+||++++++ +++.+.+... ..+++.+.|.++..+|. ++ ...++++++++.|++|++.
T Consensus 231 ~~~s~SK~~~~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~---~~~~~~~~~~~~~~~~~~~ 304 (391)
T PRK08361 231 LANSFSKTFAMTGWRLGFVIAPEQ-VIKDMIKLHAYIIGNVASFVQIAGIEALR--SK---ESWKAVEEMRKEYNERRKL 304 (391)
T ss_pred EEecCchhcCCcHhhhhhhccCHH-HHHHHHHHHhhhccCCChHHHHHHHHHhc--CC---cccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 8888876653 56788899999999994 33 1235788999999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 305 ~~ 306 (391)
T PRK08361 305 VL 306 (391)
T ss_pred HH
Confidence 75
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.26 Aligned_cols=290 Identities=16% Similarity=0.232 Sum_probs=238.3
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++.....+.++.+..... ..+++|+|+.|+|++++++.+.+++.+++.. |.+..|.+++|+++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 81 (391)
T PRK07309 7 FNKQLDKIEVSLIRQFDQSIS-----DIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQSHYTGMAGLLELRQAAADFVK 81 (391)
T ss_pred HHhhhhhcCccHHHHHHHHHH-----hcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHH
Confidence 355566666666666654222 2357999999999998888888888877643 5567789999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|+..+++++|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++. ++|.+|++.+++++
T Consensus 82 ~~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~ 160 (391)
T PRK07309 82 EKYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTE-NDFVLTPEMLEKAI 160 (391)
T ss_pred HHhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcchHHHHHHcCCEEEEEecCC-cCCcCCHHHHHHHh
Confidence 88998776544899999999999999999999999999999999999999999999999999864 56889999999988
Q ss_pred hcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 743 ETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 743 ~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
+.. ..+++++++|+ ||||.+++.+++++|+++|++||++||+||+|.++.|++... .+ .. .+.. ++
T Consensus 161 ~~~~~~~~~i~l~~P~-NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~--~~---~~-~~~~-----~~ 228 (391)
T PRK07309 161 LEQGDKLKAVILNYPA-NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPH--VS---IA-EYLP-----DQ 228 (391)
T ss_pred hccCCCeEEEEEECCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCC--CC---HH-Hhcc-----CC
Confidence 642 23589999997 999999999999999999999999999999999999966432 12 11 1211 48
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+|+++||||.||+||+|+||++++++ +++.+.+... ..+++.+.|.++..+|. ++ ..+...+++.|++|+
T Consensus 229 ~i~~~S~SK~~g~~GlRvG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~ 300 (391)
T PRK07309 229 TILINGLSKSHAMTGWRIGLIFAPAE-FTAQLIKSHQYLVTAATTMAQFAAVEALT--NG-----KDDALPMKKEYIKRR 300 (391)
T ss_pred EEEEecChhhccCccceeEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHh--CC-----hhHHHHHHHHHHHHH
Confidence 99999999999999999999999987 9988887643 46788999999999994 33 123456788888888
Q ss_pred HHHh
Q 043334 899 KRLK 902 (903)
Q Consensus 899 ~~l~ 902 (903)
+.++
T Consensus 301 ~~~~ 304 (391)
T PRK07309 301 DYII 304 (391)
T ss_pred HHHH
Confidence 8765
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=336.28 Aligned_cols=264 Identities=14% Similarity=0.173 Sum_probs=217.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.++++++|+.|+|++++++.+.+++.+++.+ |.+..|.+++|+++++++.+.+|+..+|+ +|++|+|+++
T Consensus 32 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it~Ga~~ 110 (409)
T PRK07590 32 PEAKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISAD-EIFISDGAKC 110 (409)
T ss_pred CCCceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChh-hEEECCCHHH
Confidence 3668999999999999999888888887653 55678999999999999988889888887 9999999999
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCE-----------EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKAN-----------IVNIPTESEVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~-----------vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
++..+. .+++|||+|++++|+|+.|...++..|++ +++++++.+++|.+|.+. +++ +++++
T Consensus 111 al~~l~-~~~~~gd~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~------~~~-k~i~l 182 (409)
T PRK07590 111 DTGNIL-DIFGPDNTIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELPE------EKV-DIIYL 182 (409)
T ss_pred HHHHHH-HhcCCCCEEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcccCcc------cCc-eEEEE
Confidence 999864 56789999999999999999999999997 999999766677766432 334 58999
Q ss_pred ECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc
Q 043334 753 SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML 832 (903)
Q Consensus 753 ~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g 832 (903)
++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... ..+..++... +++|+++||||+||
T Consensus 183 ~nP~-NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~------~~~~~~~~~~---~~vi~~~SfSK~~~ 252 (409)
T PRK07590 183 CFPN-NPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLP------HSIYEIEGAR---ECAIEFRSFSKTAG 252 (409)
T ss_pred eCCC-CCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCC------cchhhCCCcc---cceEEEecCccccC
Confidence 9997 999999999999999999999999999999999988866421 1122233321 47999999999999
Q ss_pred cccceeeEEEeCcHHHHHH------------HHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 833 TGALKFGFLVLNHPQLVDA------------FSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 833 ~~GlRiG~lv~~~~~li~~------------l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+||+|+||++++++ +++. +..... ..+++.++|.++..+|. ..+ ..|++++++.|++||
T Consensus 253 ~pGlRiG~~i~~~~-li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~-~~~-----~~~~~~~~~~~~~~r 325 (409)
T PRK07590 253 FTGTRCAYTVVPKE-LKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYS-PEG-----KAQIKELIDYYMENA 325 (409)
T ss_pred CcCceeEEEEcCHH-HhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhc-CCc-----HHHHHHHHHHHHHHH
Confidence 99999999999987 7762 222222 34688999999999884 122 368889999999999
Q ss_pred HHHh
Q 043334 899 KRLK 902 (903)
Q Consensus 899 ~~l~ 902 (903)
+.+.
T Consensus 326 ~~l~ 329 (409)
T PRK07590 326 KIIR 329 (409)
T ss_pred HHHH
Confidence 9875
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.96 Aligned_cols=294 Identities=13% Similarity=0.113 Sum_probs=242.4
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
++|+..+.++.+..+.+... -.++.+.+.|+|+.|+|++++++.+.+++.+.+. .|.+..|.+++|+++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 81 (386)
T PRK07550 3 NPLIAALFPPPIPEVRAWLA-GYDGADGPLIDLSQAVPGYPPPPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYS 81 (386)
T ss_pred chhhhhcCChHHHHHHHHHH-HHhhcCCCeEEeCCCCCCCCCCHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHH
Confidence 44555555556665554211 0124577899999999998888888888887653 25566799999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++++++|.+|++.+++.+
T Consensus 82 ~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~ 160 (386)
T PRK07550 82 RLYGAAISPE-QVHITSGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALI 160 (386)
T ss_pred HHhCCCCCcc-eEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHh
Confidence 9999888777 999999999999999999999999999999999999999999999999999986678889999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|+++.+++... . +.+.. ... .++++
T Consensus 161 ~~~~-~~v~~~~P~-NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~--~---~~~~~-~~~---~~~~i 229 (386)
T PRK07550 161 TPRT-RAIALVTPN-NPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAP--H---DLFAD-PDW---DDTLV 229 (386)
T ss_pred cccC-cEEEEeCCC-CCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCC--c---chhhC-CCc---cccEE
Confidence 8766 588999998 999999999999999999999999999999999886643221 1 11211 111 24899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||+||+|+||++++++ +++.+.+... ..+++.++|.++..+|. + +++|+++.++.|++|++.
T Consensus 230 ~~~S~SK~~g~~G~RiG~i~~~~~-~~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~-----~~~~~~~~~~~~~~~~~~ 301 (386)
T PRK07550 230 HLYSFSKSYALTGHRVGAVVASPA-RIAEIEKFMDTVAICAPRIGQIAVAWGLP--N-----LADWRAGNRAEIARRRDA 301 (386)
T ss_pred EEecchhhccCcccceEeeecCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHhc--c-----HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 8888887664 56678999999999993 2 357888889999999987
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 302 l~ 303 (386)
T PRK07550 302 FR 303 (386)
T ss_pred HH
Confidence 75
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=342.94 Aligned_cols=280 Identities=16% Similarity=0.234 Sum_probs=224.6
Q ss_pred CCCeEEccCCCCCC--CC-cHHHHHHHHH------H------HHccCCCCCchHHHHHHHHHHHhhcC--CCCCCCCcEE
Q 043334 614 NSGLIHMDVDQSFL--PI-PSLVKAAIFE------S------FARQNMSESEIDVTPSIQQYIKSNFG--FPIDINAEFI 676 (903)
Q Consensus 614 ~~~~IdLs~g~p~~--~~-p~~v~~al~~------a------l~~y~~~~G~~~lr~ala~~l~~~~G--~~~~pe~~I~ 676 (903)
+.++|+|+.++|.+ +. ++++++.... . +..|....|.+++|+++++++.+.+| ++.+|+ +|+
T Consensus 45 p~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~Iv 123 (496)
T PLN02376 45 PHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RVV 123 (496)
T ss_pred CCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hEE
Confidence 44799999999987 33 5555554332 1 12356678999999999999999888 667777 999
Q ss_pred ecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcEE
Q 043334 677 YADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPWV 750 (903)
Q Consensus 677 vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~v 750 (903)
+|+|+++++..++.++++|||.|++++|+|+.|...++ ..|+++++++++.+++|.+|++.+++++.. .+.+++
T Consensus 124 it~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l 203 (496)
T PLN02376 124 MSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGL 203 (496)
T ss_pred EccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEE
Confidence 99999999999999999999999999999999999887 589999999998767899999999766421 233589
Q ss_pred EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC-CCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST-NSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~-~~~~~vI~l~S~SK 829 (903)
+++||+ ||||.++|.+++++|+++|++++++||+||+|+++.|++... .++.+.....+... + .+++++++||||
T Consensus 204 ~l~nP~-NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~--~si~~l~~~~~~~~~~-~~~v~vv~S~SK 279 (496)
T PLN02376 204 ILTNPS-NPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDF--VSVAEVVNDVDISEVN-VDLIHIVYSLSK 279 (496)
T ss_pred EEcCCC-CCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCc--ccHHHhhccccccccC-CCeEEEEEeccc
Confidence 999998 999999999999999999999999999999999999987542 22222211111000 0 136888999999
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.||+||+|+||++++++.+++.+.+......++++.|.++..+|. ++ +.+++++.+.++.|++|++.+.
T Consensus 280 ~~glpGlRvG~li~~~~~l~~~~~~~~~~~~vs~~~Q~a~~~~L~--d~--~~~~~~l~~~r~~l~~r~~~l~ 348 (496)
T PLN02376 280 DMGLPGFRVGIVYSFNDSVVSCARKMSSFGLVSSQTQLMLASMLS--DD--QFVDNFLMESSRRLGIRHKVFT 348 (496)
T ss_pred cCCCCcceEEEEEECCHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--Ch--hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997765777776666666789999999999994 33 2236788899999999999875
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=329.11 Aligned_cols=290 Identities=16% Similarity=0.213 Sum_probs=237.8
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l 661 (903)
+++++..+..+.+..+....+ ..++.++|+.|.|++++|+.+.+++.+.+. .|....|.+++|+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l 78 (389)
T PRK05957 4 FTSRMDAVQSPIIPVVGQLIR-----ENPGTISLGQGVVSYPPPPEAIEALNNFLANPENHKYQAVQGIPPLLEAITQKL 78 (389)
T ss_pred hhHHHHhcCCcHHHHHHHHHH-----hCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 355666666666654443322 235789999999999999999999888764 2566789999999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
++.+|...++.++|++|+|+++++..++.+++++||.|++++|+|+.+...++..|++++.++++ ++|.+|++.+++.
T Consensus 79 ~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~ 156 (389)
T PRK05957 79 QQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTD--DNYQLQPEAIEQA 156 (389)
T ss_pred HHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEeecC--CCCCcCHHHHHHh
Confidence 99889876633389999999999999999999999999999999999999999999999999985 4678999999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... .+. . .+... ..++
T Consensus 157 i~~~~-klv~~~~p~-NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~--~~~---~-~~~~~---~~~~ 225 (389)
T PRK05957 157 ITPKT-RAIVTISPN-NPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKH--FSP---G-SIPGS---GNHT 225 (389)
T ss_pred cCcCc-eEEEEeCCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCc--cCh---h-hCCCc---cCcE
Confidence 98766 489999997 999999999999999999999999999999999998875331 111 1 12121 2489
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|+++||||.||+||+|+||++++++ +++++..... ..+++.+.|.++..+|+ ++ ..++++.++.|++||+
T Consensus 226 i~~~S~SK~~g~~GlRiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~r~ 297 (389)
T PRK05957 226 ISLYSLSKAYGFASWRIGYMVIPIH-LLEAIKKIQDTILICPPVVSQYAALGALQ--VG-----KSYCQQHLPEIAQVRQ 297 (389)
T ss_pred EEEecchhhccCccceeEEEecCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987 9999987764 55678899999999994 33 2456667777888888
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.++
T Consensus 298 ~l~ 300 (389)
T PRK05957 298 ILL 300 (389)
T ss_pred HHH
Confidence 765
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=329.12 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=241.2
Q ss_pred hhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhh
Q 043334 589 TEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~ 664 (903)
+++..++.+.++.+.... ...++++|+.|.|+.+.|+.+.+++.+.+.. |....|.+++|+++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~ 77 (387)
T PRK07777 4 SRLRPFGTTIFAEMSALA------VRTGAVNLGQGFPDEDGPPEMLEAAQEAIAGGVNQYPPGPGIPELRAAIAAQRRRR 77 (387)
T ss_pred hhhhhcCccHHHHHHHHH------hhCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 345666777777666432 2347899999999988877788877776653 556688999999999999998
Q ss_pred cCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC-CCcccCHHHHHHHhh
Q 043334 665 FGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE-VGFKMTEKTLVTILE 743 (903)
Q Consensus 665 ~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~l~ 743 (903)
+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|+.|...++..|++++.++++++ ++|.+|++++++.++
T Consensus 78 ~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~ 157 (387)
T PRK07777 78 YGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT 157 (387)
T ss_pred hCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC
Confidence 9998877657999999999999999999999999999999999999999999999999999865 478899999999887
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ ++|++++|+ ||||.+++.+++++|+++|++++++||+||+|.++.|++... .+ +..+++. .+++|+
T Consensus 158 ~~~-~~v~l~~p~-NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~--~~----~~~~~~~---~~~~i~ 226 (387)
T PRK07777 158 PRT-RALIVNSPH-NPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARH--LP----LATLPGM---RERTVT 226 (387)
T ss_pred ccc-EEEEEcCCC-CCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCc--cc----HhhCCCC---cCcEEE
Confidence 766 589999997 999999999999999999999999999999999999866532 11 2222222 258999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.||+||+|+||++++++ +++.+.+... ..+.+++.|.++..++. ++ +.|++++++.|++|++++
T Consensus 227 ~~S~SK~~g~~GlRiG~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 298 (387)
T PRK07777 227 ISSAAKTFNVTGWKIGWACGPAP-LIAAVRAAKQYLTYVGGAPFQPAVAHALD--HE-----DAWVAALRDSLQAKRDRL 298 (387)
T ss_pred EeechhhccCcCceeEEEecCHH-HHHHHHHHHhhcccCCCCHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 9988887654 45678889999998884 33 367888999999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 299 ~ 299 (387)
T PRK07777 299 A 299 (387)
T ss_pred H
Confidence 5
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.59 Aligned_cols=263 Identities=16% Similarity=0.227 Sum_probs=224.8
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
+++|+.|+|++++++.+.+++.+... .|....|.+++|+++++++++.+|++.+++++|++|+|+++++..++.+++
T Consensus 2 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~ 81 (350)
T TIGR03537 2 LFDFGTGDPKEPTPPFIRKALIDAVPEVSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI 81 (350)
T ss_pred eEeccCCCCCCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc
Confidence 68999999999988888888877543 376678999999999999999899988876689999999999999999999
Q ss_pred cCC---CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 694 LEG---GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 694 ~pG---D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++| |.|++++|+|+.|...++..|++++.++++.+++|.+|++++++++++++ +++++++|+ ||||.+++.++++
T Consensus 82 ~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-~~i~i~~p~-NPtG~~~~~~~~~ 159 (350)
T TIGR03537 82 DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEET-KIVWINYPH-NPTGATAPRSYLK 159 (350)
T ss_pred CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhhhcc-EEEEEeCCC-CCcCcccCHHHHH
Confidence 988 69999999999999999999999999999866789999999999988766 589999998 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|+++|+++|++||+||+|.++.+++... + +..++ . +++|+++||||.+|+||+|+||+++++. +++
T Consensus 160 ~l~~~a~~~~~~ii~De~y~~~~~~~~~~---~----~~~~~-~----~~~i~~~s~SK~~g~~GlRiG~~~~~~~-~~~ 226 (350)
T TIGR03537 160 ETIAMCREHGIILCSDECYTEIYFGEPPH---S----ALEVG-I----ENVLAFHSLSKRSGMTGYRSGFVAGDEK-LIS 226 (350)
T ss_pred HHHHHHHHcCcEEEEeccccccccCCCCC---c----hhhcC-c----CCEEEEeecccccCCccccceeeecCHH-HHH
Confidence 99999999999999999999887765332 1 11121 1 4899999999999999999999999877 998
Q ss_pred HHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+... ..+.+...|.++..++. +. +++++.++.|++|++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~q~~~~~~l~--~~------~~~~~~r~~l~~~~~~~~ 272 (350)
T TIGR03537 227 FLRKLRANFGVASPDFVQAAAKAAWS--DD------NHVLERRKIFKRKRDLFI 272 (350)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHhC--Cc------HHHHHHHHHHHHHHHHHH
Confidence 8887654 44555678888888873 22 567788888888888764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=334.38 Aligned_cols=295 Identities=12% Similarity=0.037 Sum_probs=219.4
Q ss_pred cCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC-CCCCcHHHHHHHHHHH---------HccCCCCCchHHHHHHHHHHH
Q 043334 593 GFSRSAISVLNSAELSITETPNSGLIHMDVDQS-FLPIPSLVKAAIFESF---------ARQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 593 ~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p-~~~~p~~v~~al~~al---------~~y~~~~G~~~lr~ala~~l~ 662 (903)
+++.+.+..+....+ ...+++.|+|+.|.| +++++....+.+.+++ .+|.+..|.+++|+++++|+.
T Consensus 10 ~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~ 86 (404)
T PTZ00376 10 LGPPDPILGLAAAFK---ADPSPSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAAQKLLF 86 (404)
T ss_pred cCCCChHHHHHHHHh---hcCCcccEecccceeECCCCCEehhhHHHHHHHHhccccCCCCCCCCCCCHHHHHHHHHHhc
Confidence 344455555443211 123568899999996 4555544444444442 237778999999999999997
Q ss_pred hhcCCCCCCCCcEE--ecCchHHHHHHHHH---HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHH
Q 043334 663 SNFGFPIDINAEFI--YADCSQSLFNKLVL---CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKT 737 (903)
Q Consensus 663 ~~~G~~~~pe~~I~--vt~Gs~~al~~ll~---~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~ 737 (903)
+..+...+++ +|+ .|.|+++++..++. ++++|||+|++++|+|+.|...++..|++++.+|+.++++|.+|++.
T Consensus 87 ~~~~~~~~~~-~v~~~~t~G~~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~l~~~~~~~~d~~~ 165 (404)
T PTZ00376 87 GEASYALAEK-RIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGLNVKEYRYYDPKTKGLDFDG 165 (404)
T ss_pred CCCccccccC-eEEEeeccCcchHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCceeeccccCcccCCcCHHH
Confidence 7666666766 888 58999999888764 67899999999999999999999999999999999655568899999
Q ss_pred HHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 738 LVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 738 L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+++.+.. ..+.++++++|| ||||.++|.+++++|+++|++|+++||+||+|.++.|++... .. ..+..+....
T Consensus 166 l~~~~~~~~~~~~~~~~~~p~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~---~~-~~~~~~~~~~ 240 (404)
T PTZ00376 166 MLEDLRTAPNGSVVLLHACAH-NPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDK---DA-YAIRLFAERG 240 (404)
T ss_pred HHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHH---HH-HHHHHHHhcC
Confidence 9998853 222467779997 999999999999999999999999999999999999864210 00 1122222221
Q ss_pred CCCCceEEEccCchhcccccceeeEE---EeCcHHHHH----HHHhCCC--CCCCcHHHHHHHHHHHhccccc-chhHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFL---VLNHPQLVD----AFSSFPG--LSKPHSTVRYAIKKLLGLRERK-ARDLMN 885 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~l---v~~~~~li~----~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~-~~~~~~ 885 (903)
+++|+++||||+|++||||+||+ +++++ +++ .+.+... ..+++.++|.++..+|. ++. .+.+.+
T Consensus 241 ---~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~~~~~~~~~ 314 (404)
T PTZ00376 241 ---VEFLVAQSFSKNMGLYGERIGALHIVCANKE-EAANVLSQLKLIIRPMYSSPPIHGARIADRILS--DPELRAEWLS 314 (404)
T ss_pred ---CcEEEEEeCCCcccccccccceEEEEeCCHH-HHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhC--CHHHHHHHHH
Confidence 48999999999999999999998 45554 444 4443332 44567899999999994 331 122335
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043334 886 AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 886 ~l~~~r~~y~~Rr~~l~ 902 (903)
+++++++.|++||+.+.
T Consensus 315 ~~~~~~~~~~~~r~~l~ 331 (404)
T PTZ00376 315 ELKEMSGRIQNMRQLLY 331 (404)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57778889999999875
|
|
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=334.67 Aligned_cols=278 Identities=16% Similarity=0.196 Sum_probs=225.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHH----------------HHccCCCCCchHHHHHHHHHHHhhcCC--CCCCCCc
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFES----------------FARQNMSESEIDVTPSIQQYIKSNFGF--PIDINAE 674 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~a----------------l~~y~~~~G~~~lr~ala~~l~~~~G~--~~~pe~~ 674 (903)
++.++|+|++.+|.+. ...+.+.+.+. +..|....|.+.+|+++++++.+++|. +.+|+ +
T Consensus 45 np~g~i~l~~aeN~l~-~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~-~ 122 (447)
T PLN02607 45 NPSGVIQMGLAENQVS-FDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPD-R 122 (447)
T ss_pred CCCceEEEechhhhhh-HHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHH-H
Confidence 5567999999999763 33334433332 122555679999999999999998873 57777 9
Q ss_pred EEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCc
Q 043334 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKP 748 (903)
Q Consensus 675 I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~ 748 (903)
|++|+|+++++.+++.++++|||.|+++.|+|+.|...+. ..|+++++++++.+++|.+|++.++++++. .+.+
T Consensus 123 Ivit~G~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk 202 (447)
T PLN02607 123 IVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVR 202 (447)
T ss_pred eEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCee
Confidence 9999999999999999999999999999999999998887 589999999998777899999999998864 2335
Q ss_pred EEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc--cCCCCCCceEEEcc
Q 043334 749 WVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY--SSTNSSFNVSLLGG 826 (903)
Q Consensus 749 ~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~--~~~~~~~~vI~l~S 826 (903)
+++++||+ ||||.++|.+++++|+++|++++++||+||+|+++.|++... .+..+....++ +.+ +++++++|
T Consensus 203 ~lll~nP~-NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f--~S~~s~~~~~~~~~~~---~~v~vi~s 276 (447)
T PLN02607 203 GVLITNPS-NPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEF--VSVAEIVEARGYKGVA---ERVHIVYS 276 (447)
T ss_pred EEEEeCCC-CCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCc--ccHHHHHhhcCCCCCc---CcEEEEEc
Confidence 89999998 999999999999999999999999999999999999976432 23222221111 111 58999999
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|||.||++|+|+||+++.++.+++++.+.....+++++.|.++..+|+ ++ +..+.++...++.|++|++.+.
T Consensus 277 ~SK~fg~~GlRvG~ivs~n~~l~~~~~~~~~~~~~s~~~q~~~~~~L~--d~--~~~~~~l~~~r~~l~~~~~~~~ 348 (447)
T PLN02607 277 LSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLS--DE--EFTENYIRTNRERLRKRYEMIV 348 (447)
T ss_pred chhcCCCCcceEEEEEEcCHHHHHHHHHHhhcCCCCHHHHHHHHHHhC--Cc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996665888888776666789999999999994 33 2235788899999999998775
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=338.79 Aligned_cols=299 Identities=12% Similarity=0.159 Sum_probs=232.2
Q ss_pred ccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH--------ccCCCCCchHHHHHHHHHHHh
Q 043334 592 IGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA--------RQNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 592 ~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~--------~y~~~~G~~~lr~ala~~l~~ 663 (903)
...+.+.++.+... ...+++|+++.+.+.+|. .+++...+.+. .|.++.|.+++|+++++++++
T Consensus 112 ~~~~~~~~r~v~~~------~~~p~~i~~~~~~~~fp~--~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~ 183 (534)
T PLN02231 112 GQQPITFFREVLAL------CDHPSLLDKSETHGLFSA--DAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEA 183 (534)
T ss_pred CCCccHHHHHHHHh------ccCCccCCCCCccccCCH--HHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHh
Confidence 44555666666643 234689999988777765 44444444433 266788999999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhcc-CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCIL-EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~-pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
++|.+.+++ +|++|+|+++++..++.+++. +||.|+++.|+|+.|...++..|+++++++++++++|.+|+++|++.+
T Consensus 184 r~g~~~~pe-~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l 262 (534)
T PLN02231 184 RDGFPADPN-DIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLEISELKKQL 262 (534)
T ss_pred ccCCCCCcc-cEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHH
Confidence 899998888 999999999999999999984 799999999999999999999999999999987778999999999988
Q ss_pred hcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCC-CCCCCCchhhhhhhhccCCC
Q 043334 743 ETV-----KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNY-EGWGGWDLEGCLSKLYSSTN 816 (903)
Q Consensus 743 ~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~-~~~s~~s~~~~~~~l~~~~~ 816 (903)
++. ..++++++||+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++ ... .++......++ ..+
T Consensus 263 ~~~~~~~~~~k~ivl~nP~-NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~--~s~~~~~~~~g-~~~ 338 (534)
T PLN02231 263 EDARSKGITVRALVVINPG-NPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKF--HSFKKVARSMG-YGE 338 (534)
T ss_pred HHHhhcCCCeEEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCc--ccHHHHHhhhc-ccc
Confidence 651 23589999997 999999999999999999999999999999999999964 222 22222111111 100
Q ss_pred CCCceEEEccCchhc-ccccceeeEEEeC--cHHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcc---cccchhHHHHHHH
Q 043334 817 SSFNVSLLGGLSLKM-LTGALKFGFLVLN--HPQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLR---ERKARDLMNAVAE 889 (903)
Q Consensus 817 ~~~~vI~l~S~SK~~-g~~GlRiG~lv~~--~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~---~~~~~~~~~~l~~ 889 (903)
.+.++|+++||||.+ |+||||+||++++ ++++++.+.++.. ..+++...|.++..++... ++..+.+.++.+.
T Consensus 339 ~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~ 418 (534)
T PLN02231 339 KDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVASVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDG 418 (534)
T ss_pred CCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHHhhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHH
Confidence 013799999999976 8999999999873 3448998887665 5667788899888888411 1112233445667
Q ss_pred HHHHHHHHHHHHhC
Q 043334 890 HIRNLESRSKRLKE 903 (903)
Q Consensus 890 ~r~~y~~Rr~~l~e 903 (903)
+++.|++|++++.+
T Consensus 419 i~~~~~~r~~~l~~ 432 (534)
T PLN02231 419 ILSSLARRAKTLED 432 (534)
T ss_pred HHHHHHHHHHHHHH
Confidence 78999999998753
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=328.69 Aligned_cols=271 Identities=16% Similarity=0.284 Sum_probs=228.2
Q ss_pred CCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 612 TPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
..++++++|++|+|+ +++++.+.+++.+.+.+ |.+..|.+++|+++++++.+ .|...+++ +|++|+|++
T Consensus 28 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~-~~~~~~~~-~i~~t~G~~ 105 (401)
T TIGR01264 28 NPEKPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHN-PDGPIEAD-DVVLCSGCS 105 (401)
T ss_pred hcCCCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHH-HEEECcChH
Confidence 346789999999985 77888899988887653 55677899999999999987 46667766 999999999
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+|++.+++.+++++ +++++++|+ ||||.
T Consensus 106 ~al~~~~~~l~~~gd~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~-~~v~~~~p~-NPtG~ 183 (401)
T TIGR01264 106 HAIEMCIAALANAGQNILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEKT-AALIVNNPS-NPCGS 183 (401)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccCc-eEEEEcCCC-CCCCC
Confidence 9999999999999999999999999999999999999999999766678899999999887666 589999998 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.. +.++|+++||||+|++||+|+||++
T Consensus 184 ~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~----~~~vi~~~SfSK~~~~~GlRiG~iv 253 (401)
T TIGR01264 184 VFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATF--EP----LASLSS----TVPILSCGGLAKRWLVPGWRLGWII 253 (401)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCccc--cc----HHHcCC----CCcEEEEccCcccCCCccceEEEEE
Confidence 9999999999999999999999999999999876432 11 222222 1369999999999999999999999
Q ss_pred eCcH-----HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 843 LNHP-----QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 843 ~~~~-----~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++. .+++.+.++.. ..+++.+.|.++..+|. +. .+++++++++.|++||+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~----~~~~l~~~~~~~~~~r~~l~ 313 (401)
T TIGR01264 254 IHDRRGILRDIRDGLVKLSQRILGPCTIVQGALPSILL--RT----PQEYFDGTLSVLESNAMLCY 313 (401)
T ss_pred ecCcchhHHHHHHHHHHHhhccCCCCcHHHHHHHHHHH--hC----cHHHHHHHHHHHHHHHHHHH
Confidence 9851 26666666544 56788999999999994 22 14788999999999998875
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=330.80 Aligned_cols=261 Identities=11% Similarity=0.110 Sum_probs=224.9
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
..+.++++|++|+|++++|+.+ +++.+++.+ |....|.+++|+++++++. ++ +++ +|++|+|+++++.+
T Consensus 23 ~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~---~~--~~~-~vi~t~G~~~al~~ 95 (373)
T PRK07324 23 IAESCIDSLTLEELLALAGKNP-EAFYQELGQKKLTYGWIEGSPEFKEAVASLYQ---NV--KPE-NILQTNGATGANFL 95 (373)
T ss_pred cccCCCCCCcHHHHHhccCcch-HHHHHHHhcCCccCCCCCCCHHHHHHHHHHhc---CC--Chh-hEEEcCChHHHHHH
Confidence 4678899999999999888877 777666654 6677899999999999874 23 444 89999999999999
Q ss_pred HHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 688 LVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 688 ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
++.+++++||+|+++.|+|+.+...++..|++++.+|++.+++|.+|++++++.+++++ +++++++|+ ||||.+++.+
T Consensus 96 ~~~~l~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~-kli~i~~p~-NPtG~~~~~~ 173 (373)
T PRK07324 96 VLYALVEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNT-KLICINNAN-NPTGALMDRA 173 (373)
T ss_pred HHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCC-cEEEEeCCC-CCCCCCCCHH
Confidence 99999999999999999999999999999999999999877789999999999888776 599999998 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
++++|+++|+++|++||+||+|.++.|++... +... . . +++|+++||||.||+||||+||+++++.
T Consensus 174 ~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~------s~~~-~--~----~~~I~~~s~SK~~~~~G~RiG~i~~~~~- 239 (373)
T PRK07324 174 YLEEIVEIARSVDAYVLSDEVYRPLDEDGSTP------SIAD-L--Y----EKGISTNSMSKTYSLPGIRVGWIAANEE- 239 (373)
T ss_pred HHHHHHHHHHHCCCEEEEEccccccccCCCCC------Chhh-c--c----CCEEEEecchhhcCCccceeEEEecCHH-
Confidence 99999999999999999999999988865421 1111 1 1 3789999999999999999999999866
Q ss_pred HHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++.+++. ..+++.++|.++..+|. + .+.+++++++.+++|++.+.
T Consensus 240 li~~~~~~~~~~~~~~~~~~q~~a~~~l~--~-----~~~~l~~~~~~~~~~~~~l~ 289 (373)
T PRK07324 240 VIDILRKYRDYTMICAGVFDDMLASLALE--H-----RDAILERNRKIVRTNLAILD 289 (373)
T ss_pred HHHHHHHHhCcEEecCChHHHHHHHHHHc--C-----HHHHHHHHHHHHHHHHHHHH
Confidence 9999998875 56788899999998883 2 24688899999999998764
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=326.37 Aligned_cols=293 Identities=17% Similarity=0.247 Sum_probs=238.5
Q ss_pred hhhhccCCCCHHHHHHHH-hhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSA-ELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a-~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~ 663 (903)
++++..+..+.++.+... .. ....+.++++|+.|.|++++|+.+.+++.+... .|.+..|.+++|+++++++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~ 81 (397)
T PRK07568 4 SKRVLNMPASPIRKLVPYADE--AKKRGIKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSHSQGIPELREAFAKYYKK 81 (397)
T ss_pred hhHhhhCCcchHHHHHHHHHH--HHhhCCCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCCCCCCHHHHHHHHHHHHH
Confidence 444445555566665531 11 012456799999999999889999888876543 366678999999999999984
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCccc-CHHHHHHHh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKM-TEKTLVTIL 742 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~l-d~~~L~~~l 742 (903)
+|...+++ +|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+ +++.+++++
T Consensus 82 -~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~ 159 (397)
T PRK07568 82 -WGIDVEPD-EILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLI 159 (397)
T ss_pred -hCCCCCcc-eEEEcCChHHHHHHHHHHhcCCCCEEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhc
Confidence 78777776 999999999999999999999999999999999999999999999999999975567764 689999988
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.+.. ++++
T Consensus 160 ~~~~-~~v~i~~p~-NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~--~s----~~~~~~~~---~~~i 228 (397)
T PRK07568 160 TPKT-KAILISNPG-NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKY--TS----ALSLEGLE---DRVI 228 (397)
T ss_pred Cccc-eEEEEECCC-CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCc--cC----hhhcCCCc---CCEE
Confidence 7766 589999998 999999999999999999999999999999999998876432 11 22222221 5899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++||||.||+||+|+||++++++++++.+.+... ..+++.+.|.++..+|. ++ +++++++++.|++|++.+
T Consensus 229 ~~~S~SK~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 301 (397)
T PRK07568 229 IIDSVSKRYSACGARIGCLISKNKELIAAAMKLCQARLSPPTLEQIGAAALLD--TP-----ESYFDEVREEYKKRRDIL 301 (397)
T ss_pred EEecchhhccCCCcceEEEecCCHHHHHHHHHHhhccCCCCcHHHHHHHHHhh--CC-----HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976558888776544 46788999999999994 33 368888999999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 302 ~ 302 (397)
T PRK07568 302 Y 302 (397)
T ss_pred H
Confidence 5
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=327.59 Aligned_cols=297 Identities=14% Similarity=0.209 Sum_probs=230.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC---CCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS---FLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~ 660 (903)
.|+++..++++.+..+.....+ .+..++++++|+.|+| ++++++.+.+++.+.+. .|....|.+++|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~ 84 (404)
T PRK09265 6 KSSKLENVCYDIRGPVLKEAKR-LEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDSKGLFSARKAIMQY 84 (404)
T ss_pred hhHHHHhcCcchhHHHHHHHHH-HHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCCCCcHHHHHHHHHH
Confidence 4556666777766655532221 1357789999999988 45678888888776544 367778999999999999
Q ss_pred HHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHH
Q 043334 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVT 740 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~ 740 (903)
+....+...+++ +|++|+|+++++..++.+++++||+|++++|+|+.|...++..|++++.++++.+++|.+|++.+++
T Consensus 85 ~~~~~~~~~~~~-~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~ 163 (404)
T PRK09265 85 YQQKGIPDVDVD-DIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRS 163 (404)
T ss_pred HhccCCCCCCcc-cEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHH
Confidence 986544356666 9999999999999999999999999999999999999999999999999998766678899999999
Q ss_pred HhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 741 ILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 741 ~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
.+++++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+.. +.+
T Consensus 164 ~~~~~~-~~v~l~~P~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~----~~~ 231 (404)
T PRK09265 164 KITPRT-KAIVIINPN-NPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVH--IS----IASLAP----DLL 231 (404)
T ss_pred hccccc-eEEEEECCC-CCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCc--CC----HHHcCC----Cce
Confidence 987766 589999998 999999999999999999999999999999999999876432 11 222222 247
Q ss_pred eEEEccCchhcccccceeeEEEeC-cHH----HHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLN-HPQ----LVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNL 894 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~-~~~----li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y 894 (903)
+|+++||||+||+||+|+||++++ +.. +++.+..... ..+++.++|.++..+|. +. +.+..++.. ++.+
T Consensus 232 vi~~~S~SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~--~~~~~~~~~-~~~~ 306 (404)
T PRK09265 232 CVTFNGLSKAYRVAGFRVGWMVLSGPKKHAKGYIEGLDMLASMRLCANVPAQHAIQTALG--GY--QSINELILP-GGRL 306 (404)
T ss_pred EEEEecchhhccCcccceEEEEEeCchHHHHHHHHHHHHHhccccCCCcHHHHHHHHHhc--Cc--hhHHHHHHH-HHHH
Confidence 999999999999999999999974 221 4455543322 56788999999999994 22 112233332 2345
Q ss_pred HHHHHHHh
Q 043334 895 ESRSKRLK 902 (903)
Q Consensus 895 ~~Rr~~l~ 902 (903)
+++|+.+.
T Consensus 307 ~~~r~~~~ 314 (404)
T PRK09265 307 YEQRDRAW 314 (404)
T ss_pred HHHHHHHH
Confidence 66666654
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=328.20 Aligned_cols=269 Identities=16% Similarity=0.232 Sum_probs=227.0
Q ss_pred CCCCCeEEccCCCC---CCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVDQS---FLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
..+.++|+|+.|.| ++++++.+.+++.+.+.. |.+..|.+++|+++++++.+.+|+..+++ +|++|+|++++
T Consensus 27 ~~~~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~a 105 (398)
T PRK08363 27 KKGIKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITPD-DVRVTAAVTEA 105 (398)
T ss_pred hcCCCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHhcCCCCChh-hEEEeCCHHHH
Confidence 46778999999999 678899999999887753 55678999999999999999889888877 99999999999
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~ 764 (903)
+..++.+++++||.|++++|+|+.+...++..|++++.++..++++|.+|++.+++.+++++ +++++++|+ ||||.++
T Consensus 106 l~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~-~~v~l~~p~-NPtG~~~ 183 (398)
T PRK08363 106 LQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKT-KAIAVINPN-NPTGALY 183 (398)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhhCCcce-EEEEEECCC-CCCCcCc
Confidence 99999999999999999999999999999999999999843334578899999999987766 589999997 9999999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe-
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL- 843 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~- 843 (903)
+.+++++|+++|+++|++||+||+|.++.|++... + +..+... .++|+++||||.|++||+|+||+++
T Consensus 184 ~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~---~----~~~~~~~----~~vi~~~SfSK~~~~~GlRiG~~~~~ 252 (398)
T PRK08363 184 EKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHV---S----PGSLTKD----VPVIVMNGLSKVYFATGWRLGYIYFV 252 (398)
T ss_pred CHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCccc---C----HHHcCcC----CcEEEEecchhccCCccceEEEEEEe
Confidence 99999999999999999999999999998876432 1 2223322 4799999999999999999999998
Q ss_pred -CcHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 844 -NHPQLVDAFSSFP-----GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 844 -~~~~li~~l~~~~-----~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ +++.+.... ...+++.+.|.++..+|. +. ++++.+.++.|++|++.+.
T Consensus 253 ~~~~-~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~-----~~~l~~~~~~~~~~~~~l~ 309 (398)
T PRK08363 253 DPEG-KLAEVREAIDKLARIRLCPNTPAQFAAIAGLT--GP-----MDYLEEYMKKLKERRDYIY 309 (398)
T ss_pred CcHH-HHHHHHHHHHHHhcccccCChHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHHHH
Confidence 444 666554332 146789999999999994 22 3688888899999988775
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=327.01 Aligned_cols=269 Identities=17% Similarity=0.179 Sum_probs=226.3
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..++++++|+.|+|+..+|+.+.+++.+.+. .|.+..|.+++|+++++++.+++|...+++++|++|+|+++++.
T Consensus 26 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~ 105 (395)
T PRK08175 26 RRGEDIIDFSMGNPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLA 105 (395)
T ss_pred hcCCCeEEcCCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHH
Confidence 3567899999999998888878777777653 36667899999999999999988998877657999999999999
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCcccC
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPTG~v 763 (903)
.++..+++|||+|++++|+|+.+...++..|++++.++++++++ +.+.+++.++. ++ +++++++|+ ||||.+
T Consensus 106 ~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~---~~~~l~~~l~~~~~~~-~~v~i~~p~-NPtG~~ 180 (395)
T PRK08175 106 HLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD---FFNELERAIRESYPKP-KMMILGFPS-NPTAQC 180 (395)
T ss_pred HHHHHhCCCCCEEEEcCCCCcchHHHHHHcCCeEEEEecccCCC---cHHHHHHHHhhccCCc-eEEEEeCCC-CCCCCC
Confidence 99999999999999999999999999999999999999986544 36778777763 34 589999997 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
++.+++++|+++|+++|++||+||+|.++.|++... . + +..++.. .+++|+++||||.||+||+|+||+++
T Consensus 181 ~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~--~---~-~~~~~~~---~~~~i~~~S~SK~~g~pGlRiG~~~~ 251 (395)
T PRK08175 181 VELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKA--P---S-IMQVPGA---KDVAVEFFTLSKSYNMAGWRIGFMVG 251 (395)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCC--c---c-hhcCCCc---ccCEEEEeeccccccCcchhheeeeC
Confidence 999999999999999999999999999998865432 1 1 1222222 14789999999999999999999999
Q ss_pred CcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 844 NHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 844 ~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ +++++.+... ..+++++.|.++..+|. +. +.+++.+++.|++|+++++
T Consensus 252 ~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~~~ 304 (395)
T PRK08175 252 NPE-LVSALARIKSYHDYGTFTPLQVAAIAALE--GD-----QQCVRDIAEQYKRRRDVLV 304 (395)
T ss_pred CHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 887 9999988764 56677889999999993 32 4688899999999998875
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=336.59 Aligned_cols=265 Identities=12% Similarity=0.136 Sum_probs=208.8
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHH-ccCCCCCchHHHHHHHHHHH-hhcCCCCCC--CCcEEecCchHHHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFA-RQNMSESEIDVTPSIQQYIK-SNFGFPIDI--NAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~~~G~~~lr~ala~~l~-~~~G~~~~p--e~~I~vt~Gs~~al~~ll~~ 691 (903)
++|+|++|+|++++|+.+.+....... .|..+.|.+++|+++++++. +.++....+ +++|++|+|+++++..++.+
T Consensus 101 ~~i~l~~g~p~~~~~~~v~e~~~~~~~~~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~a 180 (527)
T PRK09275 101 DAVSYVRDQLGFDADEFVYELVDGIIGDNYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDS 180 (527)
T ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHH
Confidence 479999999999999988885544332 37778899999999998554 433332222 33899999999999998886
Q ss_pred -----hccCCCeEEEcCCCcHHHHHHHHHcC--CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCC
Q 043334 692 -----CILEGGTLCFPAGSNGNYVSAARFLK--ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 692 -----l~~pGD~Vlv~~P~y~~~~~~~~~~G--~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~ 764 (903)
+++|||+|++++|+|+.|...++..| +++++++++++++|.+|++.+++++++++ ++++++||+ ||||.++
T Consensus 181 L~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~t-kai~l~nP~-NPTG~v~ 258 (527)
T PRK09275 181 LKENGLLKAGDKIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDPSI-KALFLVNPS-NPPSVAM 258 (527)
T ss_pred HhhhhcCCCCCEEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCC-CEEEEeCCc-CCcCCCC
Confidence 68999999999999999999988875 56666766666789999999999888777 599999998 9999999
Q ss_pred CHHHHHHHHHHHHh--CCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 765 SNKEIENILTVCAK--YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 765 s~eel~eI~~ia~k--~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
|.+++++|+++|++ ++++||+||+|..+.+ ... +.... .+ +++|+++||||+||++|||+||++
T Consensus 259 s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~------s~~~~---~~---~~~I~v~SfSK~f~mtG~RlG~i~ 324 (527)
T PRK09275 259 SDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFR------SLFAV---LP---YNTILVYSFSKYFGATGWRLGVIA 324 (527)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--ccc------CHHHh---CC---CCEEEEeehhhhccCcHhHHhhhh
Confidence 99999999999964 5999999999987664 221 12222 22 489999999999999999999999
Q ss_pred eCcHHHHHHH------------------------------------HhCCC--CCCCcHHHHHHH-----HHHHhccccc
Q 043334 843 LNHPQLVDAF------------------------------------SSFPG--LSKPHSTVRYAI-----KKLLGLRERK 879 (903)
Q Consensus 843 ~~~~~li~~l------------------------------------~~~~~--~~~~s~~~Q~aa-----~~~L~~~~~~ 879 (903)
++++++++++ ++++. ..+++++.|.++ .++|. ..
T Consensus 325 ~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~--~~- 401 (527)
T PRK09275 325 LHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLD--EE- 401 (527)
T ss_pred cCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHh--Cc-
Confidence 9986333322 23332 678899999972 33452 22
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhC
Q 043334 880 ARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
+++++++++.|++||+.+++
T Consensus 402 ----~~~~~~~~~~~~~Rr~~l~~ 421 (527)
T PRK09275 402 ----DAYKKAMKDIIRRRYKALYE 421 (527)
T ss_pred ----hHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999998763
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=325.49 Aligned_cols=257 Identities=12% Similarity=0.160 Sum_probs=212.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.+.++|+|+.|+|++++|+.+++++.+.+.. +++..|.+++|+++++++ |++ ++ +|++|+|+++++..++.
T Consensus 27 ~~~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~g~~~Lr~aia~~~----~~~--~~-~I~vt~Gs~e~i~~~~~ 99 (366)
T PRK01533 27 GDHSFVKLASNENPFGCSPRVLDELQKSWLDHALYPDGGATTLRQTIANKL----HVK--ME-QVLCGSGLDEVIQIISR 99 (366)
T ss_pred CCCceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCCCCHHHHHHHHHHHh----CCC--cc-eEEECCCHHHHHHHHHH
Confidence 4567999999999999999999998876542 345668889999998876 554 44 99999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+++++||.|++++|+|+.|...++..|++++.++++ ++.+|++++++++++++ +++++|+|| ||||.+++.++++
T Consensus 100 ~l~~~gd~vlv~~P~y~~~~~~~~~~g~~v~~v~~~---~~~~d~~~l~~~~~~~~-~~v~i~~P~-NPTG~~~~~~~l~ 174 (366)
T PRK01533 100 AVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALN---NGVYDLDEISSVVDNDT-KIVWICNPN-NPTGTYVNDRKLT 174 (366)
T ss_pred HhcCCCCEEEEcCCcHHHHHHHHHHcCCEEEEeecC---CCCcCHHHHHHHhCcCC-cEEEEeCCC-CCCCCCcCHHHHH
Confidence 999999999999999999999999999999999985 34589999999887766 589999998 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|+++|++++ ++|+||+|.++.+++... +.+..++.. +++|+++||||+||+||+|+||++++++ +++
T Consensus 175 ~l~~~~~~~~-~~iiDe~y~~~~~~~~~~------~~~~~~~~~----~~vi~~~SfSK~~~l~GlRiG~~i~~~~-~~~ 242 (366)
T PRK01533 175 QFIEGISENT-LIVIDEAYYEYVTAKDFP------ETLPLLEKH----KNILVLRTFSKAYGLASFRVGYAVGHEE-LIE 242 (366)
T ss_pred HHHHhCCCCC-EEEEEccHHHhhccccCc------chhHHhccC----CCEEEEeCchHHhcChHHHHhHHhCCHH-HHH
Confidence 9999998876 566799998777654321 122223322 4899999999999999999999999877 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
.+.+....++++.++|.++..+|+ ++ ++.+.+++.++++++++
T Consensus 243 ~l~~~~~~~~~~~~~q~aa~~~l~--~~------~~~~~~~~~~~~~r~~~ 285 (366)
T PRK01533 243 KLNVVRLPFNVSSLAQKAATIAFG--DD------EFIEEIVRVNTEGLRQY 285 (366)
T ss_pred HHHHhcCCCCcCHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHH
Confidence 999887778899999999999994 32 45555555555555544
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.45 Aligned_cols=296 Identities=19% Similarity=0.257 Sum_probs=246.8
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+++.+.+++.+..+...... ....++++++|+.|+|++++++.+.+++.+.+.. |....|.+.+|+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 82 (393)
T PRK05764 4 LSKRVSRVTPSATLAVTAKAKE-LKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGKTKYTPAAGIPELREAIAAKLK 82 (393)
T ss_pred hhhhhhhcCchHHHHHHHHHHH-HHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCcCCCCChHHHHHHHHHHHH
Confidence 5778888888887766642211 1235678999999999999889999988887653 6667788999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.+++++||.|++++|+|..+..+++..|++++.++++.+++|.+|++.+++.+
T Consensus 83 ~~~~~~~~~~-~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l 161 (393)
T PRK05764 83 RDNGLDYDPS-QVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAI 161 (393)
T ss_pred HHhCCCCCHH-HEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhh
Confidence 9888777776 999999999999999999999999999999999999999999999999999986678999999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ +++++++|+ ||||.++|.+++++|+++|+++|++||+||+|+++.|++... .+ ......+. .++++
T Consensus 162 ~~~~-~~v~~~~p~-NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~--~~---~~~~~~~~---~~~~i 231 (393)
T PRK05764 162 TPKT-KALILNSPS-NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEF--TS---IASLSPEL---RDRTI 231 (393)
T ss_pred Cccc-eEEEEECCC-CCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCc--cc---HHHcCCCC---cCCEE
Confidence 7666 589999998 999999999999999999999999999999999988865432 11 11111122 14899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.++++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. .. +++++++++.|+++++.
T Consensus 232 ~~~s~SK~~~~~G~RiG~i~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 303 (393)
T PRK05764 232 TVNGFSKAYAMTGWRLGYAAGPKE-LIKAMSKLQSHSTSNPTSIAQYAAVAALN--GP-----QDEVEEMRQAFEERRDL 303 (393)
T ss_pred EEecCcccccCccceeEEEecCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHc--CC-----hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 9999887764 56789999999999994 12 36777888888888776
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 304 l~ 305 (393)
T PRK05764 304 MV 305 (393)
T ss_pred HH
Confidence 64
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=320.86 Aligned_cols=259 Identities=17% Similarity=0.196 Sum_probs=213.0
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhc--CCCCCCCCcEEecCchHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNF--GFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~--G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
+.+++|+.|+|++++|+.+.+++.+++.. .++..|.+++|+++++++++.+ |+..+++ +|++|+|+++++..
T Consensus 28 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~G~~~Lr~aia~~~~~~~~~~~~v~~~-~I~it~Ga~~al~~ 106 (374)
T PRK02610 28 IQLDRLDTNEFPYDLPPDLKQKLAWLYQQGIESNRYPDGGHEALKQAIAEYVNESAAGSSQITPA-NISVGNGSDELIRS 106 (374)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHhCccccccCCCCHH-HEEEcCChHHHHHH
Confidence 35899999999999999999999876543 1234688999999999998876 5667776 99999999999998
Q ss_pred HHHHhccCCC-eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCcccC
Q 043334 688 LVLCCILEGG-TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 688 ll~~l~~pGD-~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPTG~v 763 (903)
++.+++.+|| .|++++|+|+.|...++..|++++.+++++ ++|.+|+++++++++. ...+++++++|| ||||.+
T Consensus 107 ~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~-NPTG~~ 184 (374)
T PRK02610 107 LLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRDP-ETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN-SPTGNP 184 (374)
T ss_pred HHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCCc-ccCCCCHHHHHHHHHhhcCCCceEEEEeCCC-CCCCCC
Confidence 8888888886 899999999999999999999999999864 4688999999998864 334699999997 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
+|.+++++|+++| ++++||+||+|.++.+. . ....+... .++|+++||||+||+||+|+||+++
T Consensus 185 ~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~~--~--------~~~~~~~~----~~~ivi~SfSK~~g~~GlRiG~~v~ 248 (374)
T PRK02610 185 LTAAELEWLRSLP--EDILVVIDEAYFEFSQT--T--------LVGELAQH----PNWVILRTFSKAFRLAAHRVGYAIG 248 (374)
T ss_pred CCHHHHHHHHhcc--CCcEEEEeccccccCcc--c--------hHHHHhcC----CCEEEEEecchhccCcccceeeeec
Confidence 9999999999876 49999999999876532 1 11222222 3789999999999999999999999
Q ss_pred CcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 844 NHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 844 ~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++ +++.+.+.+..++++.+.|.++..+|. +. +.+.+.+++.+++ |+.+
T Consensus 249 ~~~-l~~~l~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~~~~~-r~~l 297 (374)
T PRK02610 249 HPE-LIAVLEKVRLPYNLPSFSQLAAQLALE--HR-----QELLAAIPEILQE-RDRL 297 (374)
T ss_pred CHH-HHHHHHHhcCCCCCCHHHHHHHHHHhc--CH-----HHHHHHHHHHHHH-HHHH
Confidence 887 999999887767789999999998883 22 3566666666665 4444
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=301.90 Aligned_cols=271 Identities=15% Similarity=0.205 Sum_probs=239.7
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
..+++.|.+.+.|++.|+.+++++.+.++. |+++++..++.+++.+|.+++|+....++ .|+++.|...++..+++.
T Consensus 24 ~~DvlPmWVADMDf~~pp~i~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e-~i~~~p~VVpgi~~~I~~ 102 (388)
T COG1168 24 NEDVLPMWVADMDFPTPPEIIEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPE-WIVFVPGVVPGISLAIRA 102 (388)
T ss_pred CCCcceeeeecccCCCCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcc-eEEEcCcchHhHHHHHHH
Confidence 478999999999999999999999999876 56677888899999999999999999988 699999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+.+|||.|++..|.|+++....+..|.+++..|+.. ++.|.+|.++|++++.+...+++++|||| ||||.+++.+|+.
T Consensus 103 ~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPH-NP~Grvwt~eeL~ 181 (388)
T COG1168 103 LTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPH-NPTGRVWTKEELR 181 (388)
T ss_pred hCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCC-CCCCccccHHHHH
Confidence 999999999999999999999999999999999974 45699999999999987766799999997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCC-CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGW-GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~-s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
+|.++|++||+.||+||+|++++|.+..+ ++.++.+ .. .++.|.+.|.||+|+++|+++++++.+++.+.
T Consensus 182 ~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~------~~---a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr 252 (388)
T COG1168 182 KIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSE------RF---ADNSITLTSASKTFNLAGLKCAYIIISNRELR 252 (388)
T ss_pred HHHHHHHHcCCEEEeecccccccccCCCccchhhcCh------hh---hcceEEEeeccccccchhhhheeEEecCHHHH
Confidence 99999999999999999999999999654 2222211 11 25899999999999999999999999998776
Q ss_pred HHHHhC-C--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSF-P--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~-~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+. . ...++|.++-.|...+. ++| ..|++++++.++.+++++.
T Consensus 253 ~~~~~~l~~~~~~~~n~lg~~A~~aAY--~~G-----~~WLd~L~~yl~~N~~~~~ 301 (388)
T COG1168 253 AKFLKRLKRNGLHGPSALGIIATEAAY--NQG-----EPWLDELLEYLKDNRDYVA 301 (388)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHH--Hhc-----hHHHHHHHHHHHHHHHHHH
Confidence 666543 2 27788999999999999 456 4899999999999998875
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=317.21 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=215.9
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++|+|+.|+|++++|+.+.+++.+.+.. |. ..|.+++|+++++++ ++ +++ +|++|+|+++++..++
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~----~~--~~~-~I~it~G~~~al~~~~ 99 (357)
T PRK14809 28 DPDDLVKLSSNENPHGPSPAAVEAIREAAERVHSYP-KASHADLTAALADRW----DV--SPE-QVWLANGGDGALDYLA 99 (357)
T ss_pred CccceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCC-CCCHHHHHHHHHHHh----CC--Ccc-eEEECCCHHHHHHHHH
Confidence 4668999999999999999988888776532 43 467888999988875 44 444 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++++|||.|++++|+|+.|...+...|++++.++++.+++|.++.+.+.+... ++ ++++++||+ ||||.++|.+++
T Consensus 100 ~~~~~~gd~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~-~~-k~i~l~~p~-NPTG~~~s~~~~ 176 (357)
T PRK14809 100 RAMLDPGDTVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD-GE-RIVYLTSPH-NPTGSEIPLDEV 176 (357)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc-CC-cEEEEeCCC-CCCCcCCCHHHH
Confidence 999999999999999999999999999999999999766688899988877653 34 599999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|++ +++||+||+|.++.+++.. ...+.. .+++++++||||.||+||+|+||++++++ ++
T Consensus 177 ~~l~~~~~~-~~~iI~De~y~~~~~~~~~---------~~~~~~----~~~vi~~~SfSK~~~~~GlRiG~~~~~~~-~~ 241 (357)
T PRK14809 177 EALAERTDE-ETLVVVDEAYGEFAERPSA---------VALVEE----RDDVAVLRTFSKAYGLAGLRLGYAVVPEE-WA 241 (357)
T ss_pred HHHHHhCcc-CcEEEEechhhhccCCchh---------HHHHhh----CCCEEEEecchhHhcCcchhheeeecCHH-HH
Confidence 999999875 7899999999988764321 122222 25899999999999999999999999987 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.++....+++.+.|.++..+|. + ++++++.++.|++||+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~l~--~------~~~~~~~~~~~~~~r~~l~ 286 (357)
T PRK14809 242 DAYARVNTPFAASELACRAGLAALD--D------DEHVERTVETARWAREYIR 286 (357)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhC--C------HHHHHHHHHHHHHHHHHHH
Confidence 9999887777889999999999994 2 2678888899999998875
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=328.14 Aligned_cols=260 Identities=12% Similarity=0.107 Sum_probs=217.0
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
+..+++|+.|.|+.++++.+.+++.+... .|....|.+++|+++++++.+..+ .++ +|++|+|+++++..++.
T Consensus 84 ~~~~i~L~~g~p~~~~~p~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~---~~~-~Iiit~G~~~al~~~~~ 159 (431)
T PRK15481 84 GTPLHDLAGGNPDPQRLPDLSRYFARLSRTPRLYGDAPVSPELHAWAARWLRDDCP---VAF-EIDLTSGAIDAIERLLC 159 (431)
T ss_pred cchhhhhhcCCCChhHhHHHHHHHHHhhhhhhhcCCcCCCHHHHHHHHHHHhhccC---CcC-eEEEecCcHHHHHHHHH
Confidence 34688999999988776777777666432 477788999999999999876433 223 89999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEE-CCCCCCcccCCCHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYIS-GPTINPTGLLYSNKEI 769 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~-~P~~NPTG~v~s~eel 769 (903)
++++|||.|++++|+|+.|...++..|++++.+|+++ ++ +|++.+++++++++ ++++++ ||| ||||.++|.+++
T Consensus 160 ~l~~pgd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~-~g--~~~~~l~~~~~~~~-k~i~~~p~p~-NPTG~~~s~~~~ 234 (431)
T PRK15481 160 AHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-EG--MQPEKLERALAQGA-RAVILTPRAH-NPTGCSLSARRA 234 (431)
T ss_pred HhCCCCCEEEEeCCCcHHHHHHHHHcCCeEEeeccCC-CC--CCHHHHHHHHhcCC-CEEEECCCCC-CCCCccCCHHHH
Confidence 9999999999999999999999999999999999964 33 78999999887655 577776 887 999999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 770 ENILTVCAKY-GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 770 ~eI~~ia~k~-~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
++|+++|+++ +++||+||+|.++.+++.. + .+. .. .+++|+++||||+|+ ||+|+||++++++ +
T Consensus 235 ~~l~~la~~~~~~~ii~De~Y~~~~~~~~~-~------~~~---~~---~~~vi~~~SfSK~~~-~GlRiG~~i~~~~-~ 299 (431)
T PRK15481 235 AALRNLLARYPQVLVIIDDHFALLSSSPYH-S------VIP---QT---TQRWALIRSVSKALG-PDLRLAFVASDSA-T 299 (431)
T ss_pred HHHHHHHHhcCCceEEecCchhhhccCCCC-C------CCc---CC---CCCEEEEeeeccccC-CCceeEEEeCCHH-H
Confidence 9999999999 9999999999988765422 1 111 11 148999999999999 9999999999987 8
Q ss_pred HHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+.+... ..+++.+.|.++..+|+ ++ .+++|++++++.|++||+.++
T Consensus 300 ~~~~~~~~~~~~~~~s~~~q~a~~~~l~--~~---~~~~~l~~~~~~~~~~r~~~~ 350 (431)
T PRK15481 300 SARLRLRLNSGTQWVSHLLQDLVYACLT--DP---EYQARLAQARLFYAQRRQKLA 350 (431)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHh--Cc---cHHHHHHHHHHHHHHHHHHHH
Confidence 998876543 45689999999999994 33 356789999999999999886
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=319.00 Aligned_cols=272 Identities=14% Similarity=0.253 Sum_probs=228.6
Q ss_pred CCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 612 TPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
..+.++++|+.|+|. +++++.+.+++.+.+.. |.+..|.+++|+++++++...+|...+++ +|++|+|++
T Consensus 28 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~ii~t~G~t 106 (403)
T TIGR01265 28 NPEKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTAD-DVVLTSGCS 106 (403)
T ss_pred hcCCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHH-HEEEecChH
Confidence 357899999999974 67888899988887653 45567889999999999998778877766 999999999
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+++..++.+++++||+|++++|+|+.+...++..|++++.++++.+++|.+|++.+++.+++++ +++++++|+ ||||.
T Consensus 107 ~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~v~i~~p~-NPtG~ 184 (403)
T TIGR01265 107 QAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKT-VAIVVINPS-NPCGS 184 (403)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCc-cEEEEecCC-CCCCC
Confidence 9999999999999999999999999999999999999999998766678899999999887766 589999998 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+++.+++++|+++|+++|++||+||+|+++.|++... .+ +..+... .++|+++||||.|++||+|+||++
T Consensus 185 ~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~----~~~~~~~----~~vi~~~S~SK~~~~pGlRiG~~v 254 (403)
T TIGR01265 185 VFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPF--IP----MASFASI----VPVLSLGGISKRWVVPGWRLGWII 254 (403)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCc--cc----hhhhccC----CcEEEEeecccccCCCcceEEEEE
Confidence 9999999999999999999999999999999876432 11 2223321 479999999999999999999999
Q ss_pred eCc--H----HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 843 LNH--P----QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 843 ~~~--~----~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ . .+++.+.+... ..+++.+.|.++..+|. +. .+.++++.++.|++|++.++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~----~~~~~~~~~~~~~~~~~~l~ 315 (403)
T TIGR01265 255 IHDPHGIFRDTVLQGLKNLLQRILGPATIVQGALPDILE--NT----PQEFFDGKISVLKSNAELCY 315 (403)
T ss_pred EeCchhhhHHHHHHHHHHHhhhhcCCChHHHHHHHHHHH--hC----hHHHHHHHHHHHHHHHHHHH
Confidence 853 2 14455555543 56789999999999994 22 14788889999999998875
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=317.66 Aligned_cols=279 Identities=17% Similarity=0.237 Sum_probs=223.2
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH--ccCCCCCchHHHHHHHHHHHhh
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA--RQNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~--~y~~~~G~~~lr~ala~~l~~~ 664 (903)
+|++....+...+..+.+... ..+.++++|+.|+|+.+.++.+.+++.+... .|....|.+++|+++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~~~ 78 (364)
T PRK07865 3 VSARLPDFPWDTLAPAKATAA----AHPDGIVDLSVGTPVDPVPPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARR 78 (364)
T ss_pred ccccCCCccHHHHHHHHHHHH----hcCCCEEEcCCCCCCCCCCHHHHHHHHHHHhhCCCCCccCCHHHHHHHHHHHHHH
Confidence 355555555555666554322 3556799999999887778888888776543 4666789999999999999999
Q ss_pred cCCC-CCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 665 FGFP-IDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 665 ~G~~-~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+|++ .+++ +|++|+|+++++..++..+ +++||.|++++|+|+.|...++..|++++.++. +++++.
T Consensus 79 ~~~~~~~~~-~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~---------~~~l~~-- 146 (364)
T PRK07865 79 RGVTGLDPA-AVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRADS---------LTELGP-- 146 (364)
T ss_pred cCCCCCCcc-cEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccHHHHHHhcCCEEEecCC---------hhhCCc--
Confidence 9987 7777 9999999999999988888 799999999999999999999999999998852 222221
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh-h-ccCCCCCCc
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK-L-YSSTNSSFN 820 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~-l-~~~~~~~~~ 820 (903)
.++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++...+ .+.. . +.. .++
T Consensus 147 -~~~-~~v~~~~p~-NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~------~~~~~~~~~~---~~~ 214 (364)
T PRK07865 147 -QRP-ALIWLNSPS-NPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVS------ILDPRVCGGD---HTG 214 (364)
T ss_pred -ccc-eEEEEcCCC-CCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCc------cccccccCCc---cce
Confidence 233 589999997 9999999999999999999999999999999999888764321 1110 0 111 258
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+|+++||||.||+||+|+||++++++ +++.+.+... ..+++++.|.++..+|. + .+++++.++.|++|+
T Consensus 215 ~i~~~S~SK~~~~~GlRiG~i~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~------~~~~~~~~~~~~~~~ 285 (364)
T PRK07865 215 LLAVHSLSKQSNLAGYRAGFVAGDPA-LVAELLEVRKHAGMMVPAPVQAAMVAALG--D------DAHVREQRERYARRR 285 (364)
T ss_pred EEEEeechhccCCCceeeEEEecCHH-HHHHHHHHHHhcCCCcCHHHHHHHHHHhC--C------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 9998887653 56788999999999994 2 256778888999998
Q ss_pred HHHh
Q 043334 899 KRLK 902 (903)
Q Consensus 899 ~~l~ 902 (903)
+.+.
T Consensus 286 ~~l~ 289 (364)
T PRK07865 286 AVLR 289 (364)
T ss_pred HHHH
Confidence 8775
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=314.26 Aligned_cols=259 Identities=18% Similarity=0.273 Sum_probs=214.2
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
...++++|+.|+|+.++|+.+.+++.+.+.. |. ..+.+++|+++++++ ++ +++ +|++|+|+++++..++
T Consensus 17 ~~~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~-~~~~~~lr~~ia~~~----~~--~~~-~i~it~Ga~~~l~~~~ 88 (354)
T PRK06358 17 TKNMILDFSANINPLGVPESLKQAITENLDKLVEYP-DPDYLELRKRIASFE----QL--DLE-NVILGNGATELIFNIV 88 (354)
T ss_pred CccceEEecCCCCCCCCCHHHHHHHHHHHHhhhcCC-CccHHHHHHHHHHHh----CC--Chh-hEEECCCHHHHHHHHH
Confidence 3345899999999988899999988876543 43 346778888888876 44 444 9999999999999998
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++ .+ +.|++++|+|+.|...++..|++++.++++.+++|.+| +.+.+.+.+++ +++++++|| ||||.+++.+++
T Consensus 89 ~~~-~~-~~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~-~~v~~~~P~-NPtG~~~~~~~~ 163 (354)
T PRK06358 89 KVT-KP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIKEEI-DLVFLCNPN-NPTGQLISKEEM 163 (354)
T ss_pred HHh-CC-CcEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhccCC-CEEEEeCCC-CCCCCccCHHHH
Confidence 886 44 68999999999999999999999999999876788999 56555555555 588999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|++++++||+||+|.++.|++... +.+..++.. +++|+++||||+||+||+|+||++++++.++
T Consensus 164 ~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~------~~~~~~~~~----~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~ 233 (354)
T PRK06358 164 KKILDKCEKRNIYLIIDEAFMDFLEENETI------SMINYLENF----KNLIIIRAFTKFFAIPGLRLGYGLTSNKNLA 233 (354)
T ss_pred HHHHHHHHhcCCEEEEeCcccccCCCccch------hHHHhccCC----CCEEEEEechhhccCcchhheeeecCCHHHH
Confidence 999999999999999999999988876432 223333332 5899999999999999999999999765488
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.++...++++.+.|.++..+|+ +. +++.+.++.|+++|+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~q~~~~~~l~--~~------~~~~~~~~~~~~~r~~l~ 278 (354)
T PRK06358 234 EKLLQMREPWSINTFADLAGQTLLD--DK------EYIKKTIQWIKEEKDFLY 278 (354)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHhc--cH------HHHHHHHHHHHHHHHHHH
Confidence 9998887777889999999999993 22 567788888888888775
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=317.66 Aligned_cols=259 Identities=17% Similarity=0.216 Sum_probs=215.8
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHH-------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFA-------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~-------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..++|+.|+|++++|+.+.+++.+.+. .| +..|.+++|+++++++++.+|.+.+++ +|++|+|+++++..+
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~-~I~it~G~~~~l~~~ 104 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVE-NVWAANGSNEILQQL 104 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChh-hEEECCCHHHHHHHH
Confidence 569999999999999999999887653 24 345888999999999999999888887 999999999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+.++++|||.|+++.|+|+.|...++..|.+++.++.+ ++|.+|++++++++.....+++++++|+ ||||.+++.++
T Consensus 105 ~~~~~~~gd~v~v~~P~y~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~~~~i~l~~p~-NPtG~~~~~~~ 181 (368)
T PRK03317 105 LQAFGGPGRTALGFVPSYSMHPIIARGTHTEWVEGPRA--ADFTLDVDAAVAAIAEHRPDVVFLTSPN-NPTGTALPLDD 181 (368)
T ss_pred HHHhcCCCCEEEEeCCChHHHHHHHHhcCCeeEEcccC--CCCCCCHHHHHHHHhccCCCEEEEeCCC-CCCCCCCCHHH
Confidence 99999999999999999999999999999999998874 4678999999999875444689999998 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+++|++.| +++||+||+|.++.+++.. +.....+.. .++|+++||||.||++|+|+||++++++ +
T Consensus 182 l~~l~~~~---~~~lI~DE~y~~~~~~~~~-------~~~~~~~~~----~~~i~~~SfSK~~g~~GlRiG~~~~~~~-~ 246 (368)
T PRK03317 182 VEAILDAA---PGIVVVDEAYAEFRRSGTP-------SALTLLPEY----PRLVVSRTMSKAFAFAGGRLGYLAAAPA-V 246 (368)
T ss_pred HHHHHHHC---CceEEEeCCchhhcccCCc-------CHHHHHHhC----CCEEEEEechhhhccchhhhhhhhCCHH-H
Confidence 99998877 6899999999987766532 112222222 3799999999999999999999999887 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+.+....+++++++|.++..+|+ +. +++.+.++.++++++.+.
T Consensus 247 ~~~l~~~~~~~~~s~~~~~a~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 292 (368)
T PRK03317 247 VDALRLVRLPYHLSAVTQAAARAALR--HA------DELLASVAALRAERDRVV 292 (368)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhh--CH------HHHHHHHHHHHHHHHHHH
Confidence 99998877777889999999999994 22 222333445666666553
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=296.53 Aligned_cols=286 Identities=14% Similarity=0.245 Sum_probs=239.7
Q ss_pred HHHHHHHHhhh-hccCCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCC
Q 043334 598 AISVLNSAELS-ITETPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGF 667 (903)
Q Consensus 598 ~i~~l~~a~~a-~~~~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~ 667 (903)
.++.+..+-.. ......+++|.++.|+|. +++.+.+.+|+.++++. |+++.|...-|+++++|+.+....
T Consensus 43 tir~i~~~l~~~~~p~~~k~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~ 122 (447)
T KOG0259|consen 43 TIRGILSALFDCCDPEKKKPILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPN 122 (447)
T ss_pred cHHHHHHHHhhcCCcccCceeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCC
Confidence 46665543111 112233479999999986 55788899999998875 778889999999999999887776
Q ss_pred CCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCC
Q 043334 668 PIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKK 747 (903)
Q Consensus 668 ~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~ 747 (903)
+.+++ +|++|+|..+++..++.++.+||..||+|.|+|+-|...+...|.++..+++-++.+|.+|++.+++.++++|.
T Consensus 123 kl~a~-DV~ltsGC~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~ 201 (447)
T KOG0259|consen 123 KLTAD-DVVLTSGCSQAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTV 201 (447)
T ss_pred ccCcC-ceEEeccchHHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCee
Confidence 77777 99999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC
Q 043334 748 PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL 827 (903)
Q Consensus 748 ~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~ 827 (903)
+++++||+ ||+|.++|.+.+++|+++|++++++||.||+|.++.|++.+. .+ +..+... -.||.++|+
T Consensus 202 -AivviNP~-NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pf--vp----mg~fssi----VPVitlggi 269 (447)
T KOG0259|consen 202 -AIVVINPN-NPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPF--VP----MGKFSSI----VPVITLGGI 269 (447)
T ss_pred -EEEEeCCC-CCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCc--cc----hhhcccc----CceEeeccc
Confidence 99999998 999999999999999999999999999999999999998874 22 2233322 369999999
Q ss_pred chhcccccceeeEEEeCcH-------HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 828 SLKMLTGALKFGFLVLNHP-------QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 828 SK~~g~~GlRiG~lv~~~~-------~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
||.|-.||||+||++..+. ..++.+.+..+ ..+++++.|.|.-..|+.+ . +++.....+.++.+.+
T Consensus 270 sKrW~VPGWRlGWi~~hD~~gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kT-p-----~efF~k~~~~lk~na~ 343 (447)
T KOG0259|consen 270 SKRWIVPGWRLGWIALHDPRGVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKT-P-----EEFFDKKLSFLKSNAD 343 (447)
T ss_pred ccccccCCceeeeEEEecccccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhC-h-----HHHHHHHHHHHHhhHH
Confidence 9999999999999998753 24566666655 8899999999999999622 2 3666777777777766
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
+.+
T Consensus 344 l~y 346 (447)
T KOG0259|consen 344 LCY 346 (447)
T ss_pred HHH
Confidence 554
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=322.58 Aligned_cols=264 Identities=12% Similarity=0.169 Sum_probs=202.9
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHH-H-ccCCCCCchHHHHHHH-HHHHhhcCCCCCCCC--cEEecCchHHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESF-A-RQNMSESEIDVTPSIQ-QYIKSNFGFPIDINA--EFIYADCSQSLFNKLVL 690 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al-~-~y~~~~G~~~lr~ala-~~l~~~~G~~~~pe~--~I~vt~Gs~~al~~ll~ 690 (903)
++|++++|+|++++++.+ .++.+++ . .|..+.|..+++++++ +++.+.++....+.. +|++|+|+++++..++.
T Consensus 95 ~~i~l~~g~p~~~~~~~~-~~~~~~~~~~~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~ 173 (521)
T TIGR03801 95 DIISYVIDQLGFDPDAFL-YEMCDGIIGDNYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFD 173 (521)
T ss_pred HHHhhcCCCCCCCCCHHH-HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 479999999999976555 4455543 2 3545667777777666 577766554333332 79999999999999887
Q ss_pred H-----hccCCCeEEEcCCCcHHHHHHHHHc--CCEEEEecCCCCCC-----cccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 691 C-----CILEGGTLCFPAGSNGNYVSAARFL--KANIVNIPTESEVG-----FKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 691 ~-----l~~pGD~Vlv~~P~y~~~~~~~~~~--G~~vv~v~~~~~~~-----f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
+ +++|||+|++++|+|+.|...++.. |++++.++++.+++ |.+|.+.+++++++++ ++++++||+ |
T Consensus 174 ~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~-kai~l~nP~-N 251 (521)
T TIGR03801 174 SLKANELLKKGDKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSI-KALFVVNPS-N 251 (521)
T ss_pred HHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCCCC-cEEEEeCCC-C
Confidence 7 7899999999999999999998776 78888888865433 9999999999887766 599999998 9
Q ss_pred CcccCCCHHHHHHHHHHHHhC--CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 759 PTGLLYSNKEIENILTVCAKY--GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~--~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
|||.++|.+++++|+++|+++ +++||+||+|+.+.+ ... +.... .+ +++|+++||||+||+|||
T Consensus 252 PTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~------sl~~~---~~---~~vI~v~SfSK~fg~~G~ 317 (521)
T TIGR03801 252 PPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFR------SLFAE---LP---YNTIGVYSFSKYFGATGW 317 (521)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--ccc------chhhh---CC---CCEEEEEcchhhccCchh
Confidence 999999999999999999986 999999999987765 221 12222 22 489999999999999999
Q ss_pred eeeEEEeCcHHHHHHH------------------------------------HhCCC--CCCCcHHHHH-----HHHHHH
Q 043334 837 KFGFLVLNHPQLVDAF------------------------------------SSFPG--LSKPHSTVRY-----AIKKLL 873 (903)
Q Consensus 837 RiG~lv~~~~~li~~l------------------------------------~~~~~--~~~~s~~~Q~-----aa~~~L 873 (903)
|+||++++++++.+++ +++.. ..+.+++.|. ++.++|
T Consensus 318 RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all 397 (521)
T TIGR03801 318 RLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALM 397 (521)
T ss_pred hhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHh
Confidence 9999999875332222 12222 5677888887 234444
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHhC
Q 043334 874 GLRERKARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 874 ~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
++. +.+.+++++.|++|++.+++
T Consensus 398 --~~~-----~~y~~~~~~~~~~R~~~l~~ 420 (521)
T TIGR03801 398 --DKE-----NAYKAETKDICRRREKLLFR 420 (521)
T ss_pred --ccc-----hhHHHHHHHHHHHHHHHHHH
Confidence 222 46888999999999998863
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=313.89 Aligned_cols=262 Identities=15% Similarity=0.205 Sum_probs=208.2
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.++++|+.|+|++++++.+.+++.+.+.+ |.+..|.+++|+++++++.+. + .+++ +|++|+|+++
T Consensus 31 ~~~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~-~--~~~d-~I~it~Ga~~ 106 (402)
T TIGR03542 31 PSADIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRG-R--IDPE-EIFISDGAKC 106 (402)
T ss_pred CCCCeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhc-C--CCHH-HEEECCCcHH
Confidence 4678999999999999999888888876542 556679999999999986442 3 4555 9999999999
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCC-----------EEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKA-----------NIVNIPTESEVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~-----------~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
++..+ ..++.+||.|++++|+|+.|...++..|+ +++.++++++++|.+|.... .++ +++++
T Consensus 107 al~~l-~~l~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~-~~i~l 179 (402)
T TIGR03542 107 DVFRL-QSLFGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPEE-----PKI-DIIYL 179 (402)
T ss_pred HHHHH-HHhcCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcccc-----CCc-eEEEE
Confidence 99986 45678999999999999999999999999 99999997666777765321 234 59999
Q ss_pred ECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc
Q 043334 753 SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML 832 (903)
Q Consensus 753 ~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g 832 (903)
++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.+++... ..+..++.. .+++|+++||||.||
T Consensus 180 ~nP~-NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~------~~~~~~~~~---~~~vi~~~SfSK~~g 249 (402)
T TIGR03542 180 CSPN-NPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLP------HSIFEIPGA---KECAIEFRSFSKTAG 249 (402)
T ss_pred eCCC-CCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCC------cchhhCCCC---cccEEEEecCccccC
Confidence 9997 999999999999999999999999999999999888765321 112223322 148999999999999
Q ss_pred cccceeeEEEeCcHHHH--------HHHHhCC-C-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 833 TGALKFGFLVLNHPQLV--------DAFSSFP-G-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 833 ~~GlRiG~lv~~~~~li--------~~l~~~~-~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+||+|+||++++++ ++ +.+.+.. . ..+++.++|.++..++. ++. ..++.+.++.|++|++.+.
T Consensus 250 ~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~~----~~~~~~~~~~~~~~~~~~~ 322 (402)
T TIGR03542 250 FTGVRLGWTVVPKE-LTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYA--GEG----LQPILEAISYYMENARILR 322 (402)
T ss_pred CCCcceEEEEecHH-HhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHc--Ccc----hhHHHHHHHHHHHHHHHHH
Confidence 99999999999987 65 3332222 2 44688899999988884 321 2456677788888888774
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=314.40 Aligned_cols=297 Identities=13% Similarity=0.060 Sum_probs=209.5
Q ss_pred hccCCCCHHHHHHHHhhhhccCCCCCeEEccCCC-CCCCCcHHHHHHHHHH----HH-----ccCCCCCchHHHHHHHHH
Q 043334 591 MIGFSRSAISVLNSAELSITETPNSGLIHMDVDQ-SFLPIPSLVKAAIFES----FA-----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 591 ~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~-p~~~~p~~v~~al~~a----l~-----~y~~~~G~~~lr~ala~~ 660 (903)
+.+.+.+.+..+..... ...++..++++.|. ++...++.+.+++.++ +. +|.+..|.+++|++++++
T Consensus 27 ~~~~~~~~i~~~~~~~~---~~~~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~~~~~~Y~~~~G~~~LR~aia~~ 103 (423)
T PLN02397 27 VEPAPPDPILGVTEAFL---ADPSPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAGSRNKEYLPIEGLAEFNKLSAKL 103 (423)
T ss_pred CCcCCCChHHHHHHHHh---hCCCcceEecccceeeCCCCCcccchHHHHHHHHhhccCCCCCCCCcCCCHHHHHHHHHH
Confidence 34555556666554322 13566789999996 5654444333333333 21 377788999999999999
Q ss_pred HHhhcCCCCCCCCc-----EEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCH
Q 043334 661 IKSNFGFPIDINAE-----FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTE 735 (903)
Q Consensus 661 l~~~~G~~~~pe~~-----I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~ 735 (903)
+.+..+....++ + ++.++|+.+++. .+..++.|||+|++++|+|+.|...++..|++++.+|+..+++|.+|+
T Consensus 104 ~~~~~~~~~~~~-~i~~~~i~~g~Ga~~l~~-~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~ 181 (423)
T PLN02397 104 AYGADSPAIKEN-RVATVQCLSGTGSLRLGA-EFLARFYPGSTIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDF 181 (423)
T ss_pred HcCCCCchhhcC-eeEeeecccchHHHHHHH-HHHHHhCCCCEEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCH
Confidence 976544332222 3 344555554333 344555799999999999999999999999999999985444688999
Q ss_pred HHHHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 736 KTLVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 736 ~~L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
+.+++.+.. .+..++++++|| ||||.++|.+++++|+++|+++|++||+||+|.++.|++...+.. + +..+..
T Consensus 182 ~~l~~~l~~~~~~~~~i~~~~P~-NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~---~-~~~~~~ 256 (423)
T PLN02397 182 DGLLEDLKAAPDGSFVLLHACAH-NPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQ---S-VRMFVE 256 (423)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhH---H-HHHHHh
Confidence 988887753 222467777887 999999999999999999999999999999999999865211001 1 222222
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEE--eCcHHHHH----HHHhCCC--CCCCcHHHHHHHHHHHhcccc-cchhHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLV--LNHPQLVD----AFSSFPG--LSKPHSTVRYAIKKLLGLRER-KARDLM 884 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv--~~~~~li~----~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~-~~~~~~ 884 (903)
. .+++|+++||||+|+++|||+||++ +++.++++ .+.++.. ..+++.+.|.++..+|. ++ ..+.+.
T Consensus 257 ~---~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~--~~~~~~~~~ 331 (423)
T PLN02397 257 D---GHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILG--DPELFSEWT 331 (423)
T ss_pred c---CCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC--CHHHHHHHH
Confidence 2 1479999999999999999999985 44332443 4444443 45678899999999994 32 112233
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043334 885 NAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 885 ~~l~~~r~~y~~Rr~~l~ 902 (903)
++++.+++.|++||+.++
T Consensus 332 ~~~~~~~~~~~~rr~~l~ 349 (423)
T PLN02397 332 KELKGMADRIISMRQKLY 349 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457889999999999886
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=309.85 Aligned_cols=260 Identities=14% Similarity=0.185 Sum_probs=213.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHH---HccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESF---ARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al---~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.++++|+|+.|+|++.+++.+.+++.+.. ..|....|. ++|+++++++ |++ ++ +|++|+|+++++..++
T Consensus 34 ~~~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~~g~-~lr~~ia~~~----~~~--~~-~i~~t~G~~~~l~~~~ 105 (371)
T PRK05166 34 GVPRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDPQGR-ALREAIAART----GVP--AD-RIILGNGSEDLIAVIC 105 (371)
T ss_pred CCcceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcHH-HHHHHHHHHh----CcC--HH-HEEEcCCHHHHHHHHH
Confidence 45689999999999988988888887643 236555663 7788877654 654 34 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.+++++||.|+++.|+|+.+...++..|++++.++++. ++.+|++++++.+++++ +++++++|+ ||||.+++.+++
T Consensus 106 ~~~~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~~~~~~-~~v~l~~p~-NPtG~~~~~~~~ 181 (371)
T PRK05166 106 RAVLRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVTP--DLGFDLDALCAAVARAP-RMLMFSNPS-NPVGSWLTADQL 181 (371)
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHhhhcCC-CEEEEeCCC-CCCCCCCCHHHH
Confidence 99999999999999999999999999999999999964 46789999999988766 589999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|++ +++||+||+|.++.+++... +++..+... .+++|+++||||.||+||+|+||+++++++++
T Consensus 182 ~~l~~~~~~-~~~ii~De~y~~~~~~~~~~------~~~~~~~~~---~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~ 251 (371)
T PRK05166 182 ARVLDATPP-ETLIVVDEAYAEYAAGDDYP------SALTLLKAR---GLPWIVLRTFSKAYGLAGLRVGYGLVSDPELV 251 (371)
T ss_pred HHHHHhCCC-CcEEEEECcHHHhcCCcCcc------cHHHHHhhc---CCCEEEEeechHhhhcchhheeeeecCCHHHH
Confidence 999999875 88999999999888654332 122222221 14799999999999999999999887655598
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.+.....+++.++|.++..+|. +. .++++.++.|+++|+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~q~~~~~~l~--~~------~~~~~~~~~~~~~r~~l~ 296 (371)
T PRK05166 252 GLLDRVRTPFNVNGAAQAAALAALD--DE------EHLAKGVALALAERERLK 296 (371)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 9988877777889999999988883 22 567778888888888765
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=306.10 Aligned_cols=258 Identities=20% Similarity=0.246 Sum_probs=212.4
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHH--ccCCCCCchHHHHHHHHHHHhhcCCC-CCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFA--RQNMSESEIDVTPSIQQYIKSNFGFP-IDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~--~y~~~~G~~~lr~ala~~l~~~~G~~-~~pe~~I~vt~Gs~~al~~l 688 (903)
..++++++|+.|+|+.++++.+.+++.+... .|....|.+++|+++++++++++|++ ++++ +|++|+|+++++..+
T Consensus 18 ~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I~it~G~~~~i~~~ 96 (357)
T TIGR03539 18 SHPDGIVDLSVGTPVDPVPPLIRAALAAAADAPGYPQTWGTPELREAIVDWLERRRGVPGLDPT-AVLPVIGTKELVAWL 96 (357)
T ss_pred hCCCCeEEccCCCCCCCCCHHHHHHHHHHHhhCCCCcccCCHHHHHHHHHHHHHhcCCCCCCcC-eEEEccChHHHHHHH
Confidence 4667899999999988888888888776543 36667899999999999999988987 8877 999999999999998
Q ss_pred HHHh-ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 689 VLCC-ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 689 l~~l-~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
+..+ +++||.|++++|+|+.|...++..|++++.++. ++.++ ..++ +++++++|+ ||||.++|.+
T Consensus 97 ~~~l~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~---------~~~l~---~~~~-~~v~~~~p~-NPtG~~~~~~ 162 (357)
T TIGR03539 97 PTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD---------PTELD---PVGP-DLIWLNSPG-NPTGRVLSVD 162 (357)
T ss_pred HHHHcCCCCCEEEECCCCcHHHHHHHHhcCCEEeccCC---------hhhcC---ccCc-cEEEEeCCC-CCcCccCCHH
Confidence 8887 799999999999999999999999999988741 22222 1234 589999998 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh--hccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK--LYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~--l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
++++|+++|+++|++||+||+|.++.|++...+ .+.. .+.. .+++|+++||||.|+++|+|+||+++++
T Consensus 163 ~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~------~~~~~~~~~~---~~~vi~~~S~SK~~~~~G~R~G~~i~~~ 233 (357)
T TIGR03539 163 ELRAIVAWARERGAVVASDECYLELGWEGRPVS------ILDPRVCGGD---HTGLLAVHSLSKRSNLAGYRAGFVAGDP 233 (357)
T ss_pred HHHHHHHHHHHcCeEEEEecchhhhccCCCCcc------ceecccCCCc---cccEEEEeccccccCCCceeEEEEecCH
Confidence 999999999999999999999998888654321 1110 0111 1489999999999999999999999987
Q ss_pred HHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 846 PQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 846 ~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ +++.+.++.. ..+++++.|.++..+|. + ..++..+++.|++|++.++
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~------~~~~~~~~~~~~~~~~~~~ 283 (357)
T TIGR03539 234 A-LVAELLTVRKHAGLMVPAPVQAAMVAALG--D------DGHVAEQKARYAARRAQLK 283 (357)
T ss_pred H-HHHHHHHHHhhcccCCCHHHHHHHHHHcC--C------HHHHHHHHHHHHHHHHHHH
Confidence 7 9998887653 56789999999999983 2 2567788889999988775
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=306.18 Aligned_cols=257 Identities=16% Similarity=0.201 Sum_probs=209.4
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++++|+.|+|++++|+.+++++.+.+.. |. ..+.+++|+++++++ |++ ++ +|++|+|+++++..++
T Consensus 18 ~~~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~-~~~~~~lr~~ia~~~----~~~--~~-~i~it~Ga~~~l~~~~ 89 (356)
T PRK08056 18 SPDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYP-DVEYRHLHQALARHH----QVP--AS-WILAGNGETESIFAVV 89 (356)
T ss_pred ChhhEEEeccccCCCCCCHHHHHHHHHHHHhcccCc-CccHHHHHHHHHHHh----CcC--hh-hEEECCCHHHHHHHHH
Confidence 4567999999999999999999998876543 32 345677888887764 554 44 8999999999999988
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++ .+|+ +++++|+|..|...++..|++++.+|++++++|.+|. ++.+.+.+++ +++++++|+ ||||.+++.+++
T Consensus 90 ~~l-~~g~-viv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-k~v~l~~p~-NPTG~~~~~~~~ 164 (356)
T PRK08056 90 SGL-KPRR-AMIVTPGFAEYRRALQQVGCEIRRYSLREADGWQLTD-AILEALTPDL-DCLFLCTPN-NPTGLLPERQLL 164 (356)
T ss_pred HHh-CCCC-EEEeCCCcHHHHHHHHHcCCeEEEEecccccCCCccH-HHHHhccCCC-CEEEEeCCc-CCCCCCCCHHHH
Confidence 876 6776 7778999999999999999999999998767888884 4445566555 589999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|++++++||+||+|.++.+++... ...+... +++++++||||.||++|+|+||++++++.++
T Consensus 165 ~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--------~~~~~~~----~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~ 232 (356)
T PRK08056 165 QAIAERCKSLNIALILDEAFIDFIPDETGF--------IPQLADN----PHLWVLRSLTKFYAIPGLRLGYLVNSDDAAV 232 (356)
T ss_pred HHHHHHHHhcCCEEEEecchhccCCcchHH--------HHHhccC----CCEEEEEechhhccCcchhheeeecCCHHHH
Confidence 999999999999999999998887755321 1112222 4899999999999999999999999754488
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.+.....+++.+.|.++..+|+ +. .+..++++.|++||+.+.
T Consensus 233 ~~l~~~~~~~~~~~~~~~~a~~~l~--~~------~~~~~~~~~~~~~r~~l~ 277 (356)
T PRK08056 233 ARMRRQQMPWSINAFAALAGEVILQ--DR------AYQQATWQWLAEEGARFY 277 (356)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHHH
Confidence 8888776677788899999998883 22 567788888888888764
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=307.29 Aligned_cols=257 Identities=14% Similarity=0.171 Sum_probs=214.0
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
..++++|+.|+|++++++.+.+++.+.+.. |.+..|.+++|+++++++ +++ ++ +|++|+|+++++..++.+
T Consensus 28 ~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~~g~~~lr~~ia~~~----~~~--~~-~i~~t~G~~~~l~~~~~~ 100 (359)
T PRK03158 28 LEKIVKLASNENPYGPSPKVKEAIAAHLDELALYPDGYAPELRTKVAKHL----GVD--EE-QLLFGAGLDEVIQMISRA 100 (359)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHh----CCC--HH-HEEECCCHHHHHHHHHHH
Confidence 347899999999998888899988877543 455678888999888876 443 34 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
++++||.|++++|+|+.|...+...|++++.+|++ ++.+|++.+++.+++++ +++++++|+ ||||.+++.+++.+
T Consensus 101 ~~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~d~~~l~~~~~~~~-~~v~i~~p~-NPtG~~~~~~~l~~ 175 (359)
T PRK03158 101 LLNPGTNTVMAEPTFSQYRHNAIIEGAEVREVPLK---DGGHDLEAMLKAIDEQT-KIVWICNPN-NPTGTYVNHEELLS 175 (359)
T ss_pred HhCCCCEEEEcCCCHHHHHHHHHHcCCeEEEEecC---CCCcCHHHHHHhcCCCC-CEEEEeCCC-CCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999996 35589999998887766 589999997 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
+++.|+ +|++||+||+|.++.|++... +.+..++.. +++|+++||||.||+||+|+||++++++ ++++
T Consensus 176 ~~~~~~-~~~~ii~De~y~~~~~~~~~~------~~~~~~~~~----~~vi~~~S~SK~~g~~GlRiG~~v~~~~-~~~~ 243 (359)
T PRK03158 176 FLESVP-SHVLVVLDEAYYEYVTAEDYP------DTLPLLEKY----ENLIVLRTFSKAYGLAALRVGYGIASEE-LIEK 243 (359)
T ss_pred HHHhCC-CCcEEEEECchHhhcCCcccc------cHHHHHHhc----CCEEEEEechHhhcCcchhhehhcCCHH-HHHH
Confidence 998874 699999999999888765331 112223332 4899999999999999999999999987 9999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+....++++.++|.++..+|+ ++ ++++..++.++++++.+.
T Consensus 244 ~~~~~~~~~~~~~~q~~~~~~l~--~~------~~~~~~~~~~~~~~~~~~ 286 (359)
T PRK03158 244 LNIARPPFNTTRIAQYAAIAALE--DQ------AFLKECVEKNAEGLEQYY 286 (359)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 98887777899999999999994 32 466666777777776653
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=309.16 Aligned_cols=253 Identities=15% Similarity=0.201 Sum_probs=208.9
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHH-ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFA-RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
.+.++|+|+.|+|++++|+.+++++..... .+.+..+.+++|+++++++ |++ ++ +|++|+|+++++..++.+
T Consensus 50 ~~~~~i~l~~n~~p~~~~~~v~~a~~~~~~~~~Yp~~~~~~lr~~ia~~~----~~~--~~-~I~~t~Ga~~~i~~~~~~ 122 (380)
T PLN03026 50 KPEDIVKLDANENPYGPPPEVLEALGNMKFPYVYPDPESRRLRAALAEDS----GLE--SE-NILVGCGADELIDLLMRC 122 (380)
T ss_pred CccceEEccCCCCCCCCCHHHHHHHHhhHhhccCCCCCHHHHHHHHHHHh----CcC--hh-hEEEcCCHHHHHHHHHHH
Confidence 456899999999999999989888865321 2223346677777777765 554 44 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh-hcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL-ETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l-~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++++||+|++++|+|+.|...++..|++++.++++ ++|.+|++.+++.+ ++++ +++++++|| ||||.+++.++++
T Consensus 123 ~~~~gd~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~~~~~~~-~~v~l~~P~-NPTG~~~~~~~l~ 198 (380)
T PLN03026 123 VLDPGDKIIDCPPTFGMYVFDAAVNGAEVIKVPRT--PDFSLDVPRIVEAVETHKP-KLLFLTSPN-NPDGSIISDDDLL 198 (380)
T ss_pred hcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHHhccCC-cEEEEeCCC-CCCCCCCCHHHHH
Confidence 99999999999999999999999999999999985 35789999999988 4555 699999998 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|++.+ ++||+||+|.++.+++.. ...+... +++|+++||||.||++|||+||++++++ +++
T Consensus 199 ~l~~~~----~~vi~DeaY~~~~~~~~~---------~~~~~~~----~~viv~~SfSK~~glaGlRiGy~~~~~~-~i~ 260 (380)
T PLN03026 199 KILELP----ILVVLDEAYIEFSTQESR---------MKWVKKY----DNLIVLRTFSKRAGLAGLRVGYGAFPLS-IIE 260 (380)
T ss_pred HHHhcC----CEEEEECcchhhcCCcch---------HHHHHhC----CCEEEEecchHhhcCccccceeeecCHH-HHH
Confidence 988753 899999999877664321 1222222 4899999999999999999999999987 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+....++++.++|.++..+|. +. ++++++++.|+++|+.+.
T Consensus 261 ~l~~~~~~~~~~~~~q~aa~~aL~--~~------~~~~~~~~~~~~~r~~l~ 304 (380)
T PLN03026 261 YLWRAKQPYNVSVAAEVAACAALS--NP------KYLEDVKNALVEERERLF 304 (380)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhh--CH------HHHHHHHHHHHHHHHHHH
Confidence 999888777889999999999994 22 567888888999888775
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=306.01 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=209.4
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
...++|+.|+|++++|+.+.+++.+.... |... +.+++|+++++++ |++ ++ +|++|+|+++++..++.+
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~~ia~~~----~~~--~~-~I~it~G~~~~l~~~~~~ 103 (369)
T PRK08153 32 PFRARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-ENHDLRHALAAHH----GVA--PE-NIMVGEGIDGLLGLIVRL 103 (369)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-ccHHHHHHHHHHh----CCC--HH-HEEEcCCHHHHHHHHHHH
Confidence 34579999999999999999998877543 4433 4678888888765 554 44 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
+++|||.|++++|+|+.+...++..|++++.+|++.+ .+|++.+.+.+.....+++++++|+ ||||.++|.+++.+
T Consensus 104 ~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~---~~~~~~l~~~~~~~~~~~i~l~~P~-NPtG~~~~~~~l~~ 179 (369)
T PRK08153 104 YVEPGDPVVTSLGAYPTFNYHVAGFGGRLVTVPYRDD---REDLDALLDAARRENAPLVYLANPD-NPMGSWHPAADIVA 179 (369)
T ss_pred hcCCCCEEEECCCcchHHHHHHHHcCCeEEEeeCCCC---CCCHHHHHHHhcccCCcEEEEeCCC-CCCCCCCCHHHHHH
Confidence 9999999999999999999999999999999998542 3789998877653333589999997 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|++.|++ +++||+||+|.++.+++... + +.. .. +++|+++||||+||+||+|+||++++++ +++.
T Consensus 180 l~~~~~~-~~~lI~DE~y~~~~~~~~~~------~-~~~--~~----~~~i~~~SfSK~~g~~GlRiG~~v~~~~-~~~~ 244 (369)
T PRK08153 180 FIEALPE-TTLLVLDEAYCETAPAGAAP------P-IDT--DD----PNVIRMRTFSKAYGLAGARVGYAIGAPG-TIKA 244 (369)
T ss_pred HHHhCCC-CcEEEEeCchhhhcCcccch------h-hhh--cC----CCEEEEecchHhccCcchheeeeecCHH-HHHH
Confidence 9999874 99999999999887755321 1 111 11 4799999999999999999999999887 9999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+....++++.+.|.++..+|. ++ ++++++++.++++|+.+.
T Consensus 245 l~~~~~~~~~s~~~q~~~~~~l~--~~------~~~~~~~~~~~~~r~~~~ 287 (369)
T PRK08153 245 FDKVRNHFGMNRIAQAAALAALK--DQ------AYLAEVVGKIAAARDRIA 287 (369)
T ss_pred HHHhhcCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 98887778899999999999994 32 567778888888888764
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=307.54 Aligned_cols=272 Identities=22% Similarity=0.344 Sum_probs=226.7
Q ss_pred CeEEccCCCCCCC----CcHHHHHHHHH-HHH-----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 616 GLIHMDVDQSFLP----IPSLVKAAIFE-SFA-----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 616 ~~IdLs~g~p~~~----~p~~v~~al~~-al~-----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
++|+|+.|+++.. +++.+.+++.+ ... .|.+..|.+++|+++++++.+..|++.+++.+|++++|+++++
T Consensus 2 ~~I~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~ 81 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQNPPPPAAIKAAIRGAATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAAL 81 (363)
T ss_dssp TEEESSSSSTSSTTSSHHHHHHHHHHHHHHHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHH
T ss_pred CEEEEECCCCCCcccccchHHHHHHHHHHhhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccch
Confidence 6899999999987 55666666554 211 3677788999999999999988898888766899999999999
Q ss_pred HHHHHHh-ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCC
Q 043334 686 NKLVLCC-ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINP 759 (903)
Q Consensus 686 ~~ll~~l-~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NP 759 (903)
..+...+ .++||.|++++|+|+.|...++..|+++++++++.+++|.+|+++|++.+++. +++++++++|+ ||
T Consensus 82 ~~~~~~~~~~~~~~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~-nP 160 (363)
T PF00155_consen 82 FLLLRLLKINPGDTVLVPDPCYPSYIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPN-NP 160 (363)
T ss_dssp HHHHHHHHSSTTSEEEEEESSSTHHHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSB-TT
T ss_pred hhhhhcccccccccceecCCccccccccccccCceeeeccccccccccccccccccccccccccccccceeeecccc-cc
Confidence 9999888 78999999999999999999999999999999887778999999999998872 23599999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++.+++++|+++|+++|++||+||+|+++.++.... . +....++.. .++|+++||||+||++|+|+|
T Consensus 161 tG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~--~---~~~~~~~~~----~~vi~~~S~SK~~g~~GlRvG 231 (363)
T PF00155_consen 161 TGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDF--G---PIRSLLDED----DNVIVVGSLSKSFGLPGLRVG 231 (363)
T ss_dssp TTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHT--H---HHHGHHTTT----STEEEEEESTTTTTSGGGTEE
T ss_pred cccccccccccchhhhhcccccceeeeeceeccccCCCcc--C---ccccccccc----ccceeeeeccccccccccccc
Confidence 9999999999999999999999999999999998876531 1 112333332 369999999999999999999
Q ss_pred EEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+++++. +++.+.+.......+++.|.++..++. +. ....++++++++.|++|++.+.
T Consensus 232 ~i~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~l~--~~--~~~~~~~~~~~~~l~~~~~~l~ 289 (363)
T PF00155_consen 232 YIVAPPE-LIERLRRFQRSGLSSSPMQAAAAAALS--DP--ELVEKWLEELRERLRENRDLLR 289 (363)
T ss_dssp EEEEEHH-HHHHHHHHHHHTTSSHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhh-hhhhhhhccccccccchhhHHHHHhhh--cc--cccccccccchhhHHHHHHHHH
Confidence 9999766 999999877644448999999999994 22 2234589999999999998875
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=301.21 Aligned_cols=256 Identities=17% Similarity=0.169 Sum_probs=201.8
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
....++|+|+.|+|++++|+.+.+++.+.+.. |.. .+.+++|+++++++ +++ ++ +|++|+|+++++..+
T Consensus 19 ~~~~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~-~~~~~Lr~aia~~~----~v~--~~-~I~it~G~~~~i~~~ 90 (360)
T PRK07392 19 CPPDAILDFSASINPLGPPESVIAAIQSALSALRHYPD-PDYRELRLALAQHH----QLP--PE-WILPGNGAAELLTWA 90 (360)
T ss_pred CCcccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC-cCHHHHHHHHHHHh----CcC--hh-hEEECCCHHHHHHHH
Confidence 34457899999999999999999988776543 443 34578888888876 554 44 999999999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc---ccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCC
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF---KMTEKTLVTILETVKKPWVYISGPTINPTGLLYS 765 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f---~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s 765 (903)
+.++. +||.|++++|+|+.|...++..|++++.++++.++++ ..+++.+++... ++ ++++++||| ||||.+++
T Consensus 91 ~~~l~-~g~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~l~nP~-NPTG~~~~ 166 (360)
T PRK07392 91 GRELA-QLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQLT-PN-DGLLLNNPH-NPTGKLWS 166 (360)
T ss_pred HHHhC-CCCeEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhcc-CC-CEEEEeCCC-CCCCCCcC
Confidence 88864 7899999999999999999999999999999865554 356777765532 33 599999997 99999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 766 NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 766 ~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
.+++.+ +++++++ +|+||+|.++.+++... +....++.. +++|+++||||+||+||+|+||+++++
T Consensus 167 ~~~l~~---l~~~~~~-~IiDE~y~~~~~~~~~~------s~~~~~~~~----~~vi~i~S~SK~~~l~GlRiG~~v~~~ 232 (360)
T PRK07392 167 REAILP---LLEQFAL-VVVDEAFMDFLPPDAEQ------SLIPCLAEY----PNLIILRSLTKFYSLPGLRLGYAIAHP 232 (360)
T ss_pred HHHHHH---HHHHCCE-EEEECchhhhccCcccc------chHHHhhcC----CCEEEEEechhhhcCCchheeeeeCCH
Confidence 766555 4567775 56699999888766432 122223322 489999999999999999999999998
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 846 PQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 846 ~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ +++.+.+.....+++.++|.++..+|+ ++ .+.+.+++.++++|+.+.
T Consensus 233 ~-~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~------~~~~~~~~~~~~~r~~l~ 280 (360)
T PRK07392 233 D-RLQRWQQWRDPWPVNGLAAAAAIAALA--DR------DFQQQTWAWLPPAREALF 280 (360)
T ss_pred H-HHHHHHhhCCCCCCCHHHHHHHHHHhc--cH------HHHHHHHHHHHHHHHHHH
Confidence 7 889988777677899999999999994 33 455566667788877764
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=299.57 Aligned_cols=253 Identities=23% Similarity=0.364 Sum_probs=211.5
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.+++++|+.++|++++|+.+++++.+.+. .|.. ....++++++++++ |. .+++ +|++++|++++|..+++
T Consensus 21 ~~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd-~~~~~l~~a~a~~~----~~-~~~~-~V~~gnGsde~i~~l~~ 93 (356)
T COG0079 21 LPGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPD-PDYRELRAALAEYY----GV-VDPE-NVLVGNGSDELIELLVR 93 (356)
T ss_pred CccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCC-CcHHHHHHHHHHHh----CC-CCcc-eEEEcCChHHHHHHHHH
Confidence 33699999999999999999998888764 3433 35666777766654 52 2333 89999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+++.|||+|+++.|+|..|...++..|++++.++..+ |.+|++.+.+.+.+++ ++|++|||| ||||..++.++++
T Consensus 94 ~~~~~gd~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~---~~~d~~~~~~~~~~~~-~lv~i~nPN-NPTG~~~~~~~l~ 168 (356)
T COG0079 94 AFVEPGDTVLIPEPTFSMYEIAAQLAGAEVVKVPLKE---FRLDLDAILAAIRDKT-KLVFLCNPN-NPTGTLLPREELR 168 (356)
T ss_pred HhhcCCCEEEEcCCChHHHHHHHHhcCCeEEEecccc---cccCHHHHHHhhhcCC-CEEEEeCCC-CCCCCCCCHHHHH
Confidence 9999999999999999999999999999999999964 8899999999998855 699999999 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
++++.+.+ +.+||+||+| ++|.++. ....+. .+ .++++++||||.||++|+|+||++++++ +++
T Consensus 169 ~l~~~~~~-~~~vVvDEAY--~eF~~~~--------~~~l~~-~~---~nlivlRTfSKa~gLAGlRlGy~ia~~~-~i~ 232 (356)
T COG0079 169 ALLEALPE-GGLVVIDEAY--IEFSPES--------SLELLK-YP---PNLIVLRTFSKAFGLAGLRVGYAIANPE-LIA 232 (356)
T ss_pred HHHHhCCC-CcEEEEeCch--hhcCCch--------hhhhcc-CC---CCEEEEEecHHhhhcchhceeeccCCHH-HHH
Confidence 99999988 9999999999 5665532 233333 22 4799999999999999999999999888 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.++...++.+.++|.++.++|. +. +++++.++..+..|+++.
T Consensus 233 ~l~~vr~p~~v~~~a~~aa~aal~--~~------~~~~~~~~~~~~~r~rl~ 276 (356)
T COG0079 233 ALNKVRPPFNVSSPALAAAIAALR--DA------DYLEESVERIREERERLY 276 (356)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcc--cH------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999995 21 455555555555555543
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=303.47 Aligned_cols=251 Identities=16% Similarity=0.174 Sum_probs=205.5
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
++.++|+.|+|++++|+.+.+++.+.+.. |... +.+++|+++++ ++|++ ++ +|++|+|+++++..++.+
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-~~~~Lr~aia~----~~~v~--~e-~I~it~Gs~~ai~~~~~~ 114 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALSGRYDLE-LEDDLRTLFAA----QEGLP--AD-HVMAYAGSSEPLNYAVLA 114 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHH----HhCcC--hh-hEEEcCChHHHHHHHHHH
Confidence 57899999999999999999999887643 3322 35677777665 45764 44 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
++++||+|++++|+|+.|...++..|++++.++++. +|.+|++.+++. .+++ ++++++||| ||||.+++.+++++
T Consensus 115 l~~~gd~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~-~~~~-~~v~l~nP~-NPTG~~~~~~~l~~ 189 (370)
T PRK09105 115 FTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRA--DGAHDVKAMLAA-DPNA-GLIYICNPN-NPTGTVTPRADIEW 189 (370)
T ss_pred HcCCCCEEEEeCCChHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHhc-CCCC-CEEEEeCCC-CCCCcCcCHHHHHH
Confidence 999999999999999999999999999999999864 577999999876 3444 589999998 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|++.|+ ++++||+||+|.++. +.. + .....+. .+++++++||||.||++|||+||++++++ +++.
T Consensus 190 l~~~~~-~~~~lIvDEaY~~f~--~~~----s---~~~~~~~----~~~vi~~~SfSK~~g~~GlRiG~~v~~~~-~i~~ 254 (370)
T PRK09105 190 LLANKP-AGSVLLVDEAYIHFS--DAP----S---VVDLVAQ----RKDLIVLRTFSKLYGMAGMRLGLAAARPD-LLAK 254 (370)
T ss_pred HHHhCC-CCcEEEEECchHHhc--cCc----c---hHHHHhh----CCCEEEEecccHhhcCCccceeeeecCHH-HHHH
Confidence 999764 599999999996543 221 1 1221122 14899999999999999999999999887 9999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+... ....++.+.|.++..+|. + .+|+++.++.|+++|+.+.
T Consensus 255 l~~~-~~~~~~~~~~~aa~~~L~--~------~~~~~~~~~~~~~~r~~l~ 296 (370)
T PRK09105 255 LARF-GHNPLPVPAAAAGLASLR--D------PKLVPQRRAENAAVREDTI 296 (370)
T ss_pred HHhc-CCCCcCHHHHHHHHHHHh--C------HHHHHHHHHHHHHHHHHHH
Confidence 8877 555588889999999994 2 2578888888988888775
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=298.47 Aligned_cols=245 Identities=16% Similarity=0.207 Sum_probs=207.0
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHH-------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFA-------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~-------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...++++|+.|.|++++++.+.+++.+.+. .|....|.+++|+++++++.+.++...+|+ +|++|+|+++++
T Consensus 31 ~~~~~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t~G~~~al 109 (394)
T PRK06836 31 GADNVFDFSLGNPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTAD-HIVMTCGAAGAL 109 (394)
T ss_pred CCCCeEEecCcCCCCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcC-cEEEeCChHHHH
Confidence 346789999999988888889998877654 255668999999999999998888887777 999999999999
Q ss_pred HHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCC
Q 043334 686 NKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYS 765 (903)
Q Consensus 686 ~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s 765 (903)
..++..++++||.|++++|+|..|...++..|++++.+++++ ++|.+|++++++.+++++ +++++++|+ ||||.+++
T Consensus 110 ~~~~~~l~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~~~~~~-~~v~~~~p~-NPtG~~~~ 186 (394)
T PRK06836 110 NVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDT-DTFQPDLDALEAAITPKT-KAVIINSPN-NPTGVVYS 186 (394)
T ss_pred HHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCC-ccCcCCHHHHHhhcCcCc-eEEEEeCCC-CCCCcCCC
Confidence 999999999999999999999999999999999999999975 357899999999998766 589999998 99999999
Q ss_pred HHHHHHHHHHHHh------CCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 766 NKEIENILTVCAK------YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 766 ~eel~eI~~ia~k------~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
.+++++|+++|++ ||++||+||+|.++.|++... . +... .. +++++++||||.||+||+|+|
T Consensus 187 ~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~--~---~~~~---~~----~~~i~~~S~SK~~~~pGlRiG 254 (394)
T PRK06836 187 EETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEV--P---YIFK---YY----DNSIVVYSFSKSLSLPGERIG 254 (394)
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCC--C---ChHH---cc----CcEEEEecchhhccCcceeeE
Confidence 9999999999999 899999999999998876432 1 1111 11 489999999999999999999
Q ss_pred EEEeCcHHHHH------HHHhCCC---CCCCcHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVD------AFSSFPG---LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 840 ~lv~~~~~li~------~l~~~~~---~~~~s~~~Q~aa~~~L~ 874 (903)
|+++++. +.+ .+..... ..+++.+.|.++..++.
T Consensus 255 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~ 297 (394)
T PRK06836 255 YIAVNPE-MEDADDLVAALVFANRILGFVNAPALMQRVVAKCLD 297 (394)
T ss_pred EEecCHH-HhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhC
Confidence 9999876 432 2222221 34678889999999984
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=297.62 Aligned_cols=253 Identities=18% Similarity=0.343 Sum_probs=208.1
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.+.++|+|+.|+|++++|+.+++++.+++.. |. ..|.+++|+++++++ |.+.. + +|++|+|+++++..
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~lr~~ia~~~----~~~~~-~-~I~~t~G~~~~i~~ 96 (356)
T PRK04870 24 DATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYP-DPRAAALKAALRAAM----GVPAG-A-DVLLGNGSDELIQL 96 (356)
T ss_pred CCCCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCC-CCCHHHHHHHHHHHh----CcCCC-C-cEEEcCCHHHHHHH
Confidence 3457999999999999999999999987643 33 356777888887766 44321 2 79999999999999
Q ss_pred HHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 688 LVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 688 ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
++.+++++||+|++++|+|+.|...++..|++++.+|+++ +|.+|++.+++.+.+.+.+++++++|+ ||||.+++.+
T Consensus 97 ~~~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~~~~~~~~~v~l~~p~-NPtG~~~~~~ 173 (356)
T PRK04870 97 LALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTA--DFTLDLPAMLAAIAEHRPALVFLAYPN-NPTGNLFDDA 173 (356)
T ss_pred HHHHhcCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhhcCCCCEEEEcCCC-CCCCCCCCHH
Confidence 9999999999999999999999999999999999999963 578999999999875444699999997 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
++++|+++| ++++|+||+|.++.++ .. ...+... +++++++|||| +++||+|+||++++++
T Consensus 174 ~~~~i~~~~---~~~ii~De~y~~~~~~--~~--------~~~~~~~----~~vi~~~S~SK-~~~~GlRiG~~i~~~~- 234 (356)
T PRK04870 174 DVERIIEAA---PGLVVVDEAYQPFAGD--SW--------LPRLARF----PNLLVMRTVSK-LGLAGLRLGYLAGHPA- 234 (356)
T ss_pred HHHHHHHHC---CCEEEEECCchhhcCc--ch--------HHHHhhC----CCEEEEecchh-hhhHHHhhhhhhCCHH-
Confidence 999999998 6789999999766532 11 1112222 48999999999 8999999999999987
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+.+....++++.++|.++..+++ +. +++++.++.++++++.+.
T Consensus 235 ~i~~~~~~~~~~~~~~~~q~~a~~~l~--~~------~~~~~~~~~~~~~~~~l~ 281 (356)
T PRK04870 235 WIAELDKVRPPYNVNVLTQATALFALE--HV------DVLDAQAAQLRAERTRLA 281 (356)
T ss_pred HHHHHHHccCCCcCCHHHHHHHHHHHh--CH------HHHHHHHHHHHHHHHHHH
Confidence 999998877667788999999888883 22 345667777777777664
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.6e-31 Score=303.05 Aligned_cols=265 Identities=14% Similarity=0.111 Sum_probs=203.4
Q ss_pred CCCeEEccCCCCCCCC-c-HHHHHHHHHHHH---------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 614 NSGLIHMDVDQSFLPI-P-SLVKAAIFESFA---------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~-p-~~v~~al~~al~---------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
.+++|+|+.|.|+..+ + ..+.+++.+.+. .|....|.+++|+++++++++.+|+..+++ +|++|+|++
T Consensus 29 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~-~I~it~Ga~ 107 (416)
T PRK09440 29 TPGAIMLGGGNPAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQ-NIALTNGSQ 107 (416)
T ss_pred CCCceeccCCCCCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChh-hEEEccChH
Confidence 3678999999987543 2 345566555442 366678999999999999999899988887 999999999
Q ss_pred HHHHHHHHHhcc-----CCCeEEE-cCCCcHHHHHHHHHcC----CEEEEecCCCCC-CcccCHHHHHHHhhcCCCcEEE
Q 043334 683 SLFNKLVLCCIL-----EGGTLCF-PAGSNGNYVSAARFLK----ANIVNIPTESEV-GFKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 683 ~al~~ll~~l~~-----pGD~Vlv-~~P~y~~~~~~~~~~G----~~vv~v~~~~~~-~f~ld~~~L~~~l~~~~~~~vi 751 (903)
+++..++.++++ +||.|++ ++|+|+.|...+...| ..+..++++.++ +|.+|++.++ +.+++ ++++
T Consensus 108 ~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~-~~i~ 184 (416)
T PRK09440 108 SAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--IDEDT-GAIC 184 (416)
T ss_pred HHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cCCCc-eEEE
Confidence 999999999985 6899999 7999999998765444 222223333221 4779999997 34444 6999
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+++|| ||||.++|.+++++|+++|+++|++||+||+|..+.. ... .....+.. .+++|+++||||+
T Consensus 185 l~~P~-NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~-~~~--------~~~~~~~~---~~~vI~~~SfSK~- 250 (416)
T PRK09440 185 VSRPT-NPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP-GII--------FSEATPLW---NPNIILCMSLSKL- 250 (416)
T ss_pred EecCC-CCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC-Ccc--------hhhcCccc---cCCeEEEeccccc-
Confidence 99998 9999999999999999999999999999999964321 100 00000111 1589999999996
Q ss_pred ccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHH-HHHHHHHHHHHHh
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAE-HIRNLESRSKRLK 902 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~-~r~~y~~Rr~~l~ 902 (903)
++||+|+||++++++ +++++..... ..+++.+.|.++..+|. ++ .+..++.+ +++.|++|++.+.
T Consensus 251 ~~pGlRiG~~i~~~~-l~~~~~~~~~~~~~~~s~~~q~~~~~~l~--~~---~~~~~~~~~~~~~~~~r~~~~~ 318 (416)
T PRK09440 251 GLPGVRCGIVIADEE-IIEALSNMNGIISLAPGRLGPAIAAEMIE--SG---DLLRLSETVIRPFYRQKVQLAI 318 (416)
T ss_pred CCCcceEEEEeCCHH-HHHHHHHHHHHhccCCCcHHHHHHHHHhc--cc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887 9999988765 56789999999999994 44 24455544 6888888888764
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-30 Score=294.73 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=201.7
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHH----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFA----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
..++|+|+.|+|++++++.+.+++.+.+. .|. ..|.+++|+++++++ ++ +++ +|++|+|+++++..++
T Consensus 23 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~-~~~~~~lr~aia~~~----~~--~~~-~I~it~G~~~al~~~~ 94 (353)
T PRK05387 23 LAKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYP-DPNADALRQAIAAYY----GL--DPE-QVFVGNGSDEVLAHAF 94 (353)
T ss_pred ccceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCC-CCcHHHHHHHHHHHh----CC--CHH-HEEEcCCHHHHHHHHH
Confidence 35789999999999988888888877653 243 346688888888876 44 344 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++++|||.|++++|+|+.|...++..|++++.+++++ +|.+|++++++ .+ +++++++|+ ||||.++|.+++
T Consensus 95 ~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~----~~-~~v~~~~P~-NPtG~~~~~~~~ 166 (353)
T PRK05387 95 LAFFNHDRPLLFPDITYSFYPVYAGLYGIPYEEIPLDD--DFSIDVEDYLR----PN-GGIIFPNPN-APTGIALPLAEI 166 (353)
T ss_pred HHhcCCCCEEEEeCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHh----cC-CEEEEeCCC-CCCCCCCCHHHH
Confidence 99999999999999999999999999999999999863 57799998864 23 589999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|++.++ +++||+||+|.+ |.+... .+. .... +++++++||||.||+||+|+||++++++ ++
T Consensus 167 ~~l~~~~~--~~~livDe~y~~--~~~~~~-----~~~---~~~~----~~~i~~~S~SK~~~~~GlR~G~~~~~~~-~~ 229 (353)
T PRK05387 167 ERILAANP--DSVVVIDEAYVD--FGGESA-----IPL---IDRY----PNLLVVQTFSKSRSLAGLRVGFAIGHPE-LI 229 (353)
T ss_pred HHHHHhCC--CcEEEEeCcccc--cCCcch-----HHH---HhhC----CCEEEEEehhHhhcchhhhceeeecCHH-HH
Confidence 99998653 899999999964 443321 111 1222 4799999999999999999999999877 99
Q ss_pred HHHHhCCC---CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPG---LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~---~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+... ..+++.+.|.++..+|. +. ++.++.++.+++|++.+.
T Consensus 230 ~~l~~~~~~~~~~~~~~~~q~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 277 (353)
T PRK05387 230 EALNRVKNSFNSYPLDRLAQAGAIAAIE--DE------AYFEETRAKVIATRERLV 277 (353)
T ss_pred HHHHHhhccCCCCCcCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 99887764 35678999999999993 22 456677778888887764
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=291.16 Aligned_cols=246 Identities=19% Similarity=0.305 Sum_probs=196.0
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
.+.+.|+|+.|+|++++|+.+++++.+++.. +++..|.+++|+++++++.+. ++ +++ +|++|+|+++++..+
T Consensus 17 ~~~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~Y~~~~~~~Lr~aia~~~~~~-~~--~~~-~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 17 EKRDRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTD-FL--SKN-NVSVGNGADEIIYVM 92 (335)
T ss_pred CCCceeEecCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCChHHHHHHHHHHhCCC-CC--Ccc-eEEEcCCHHHHHHHH
Confidence 5568999999999999999999998876532 123458899999999999764 33 444 999999999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+.++ |.|++++|+|+.|...++..|++++.+|+++ +|.++... +. .+ ++++++||| ||||.++|.++
T Consensus 93 ~~~~----d~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~----~~-~~-~~i~i~nP~-NPTG~~~s~~~ 159 (335)
T PRK14808 93 MLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVN----VG-EG-DVVFIPNPN-NPTGHVFEREE 159 (335)
T ss_pred HHHh----CcEEECCCCHHHHHHHHHHcCCeEEEecCCC--cCCCChhH----cc-CC-CEEEEeCCC-CCCCCCcCHHH
Confidence 8877 6799999999999999999999999999974 35455332 22 33 599999998 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+++|+ +++++||+||+|.++. +... . +.+ ... +++|+++||||+||++|+|+||++++++ +
T Consensus 160 l~~l~----~~~~~ii~DE~Y~~f~--~~~~--~---~~~---~~~----~~vi~~~S~SK~~~l~GlRvG~~v~~~~-~ 220 (335)
T PRK14808 160 IERIL----KTGAFVALDEAYYEFH--GESY--V---DLL---KKY----ENLAVIRTFSKAFSLAAQRIGYVVSSEK-F 220 (335)
T ss_pred HHHHH----hcCCEEEEECchhhhc--CCch--H---HHH---HhC----CCEEEEEechhhccCcccceEEEEeCHH-H
Confidence 98886 4799999999997753 2221 1 112 222 4899999999999999999999999987 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++.+.+..++++.++|.++..++. +. ++..+.++.++++|+.+.
T Consensus 221 ~~~l~~~~~~~~~~~~~q~a~~~~l~--~~------~~~~~~~~~~~~~r~~l~ 266 (335)
T PRK14808 221 IDAYNRVRLPFNVSYVSQMFAKVALD--HR------EIFEERTKFIVEERERMK 266 (335)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHh--CH------HHHHHHHHHHHHHHHHHH
Confidence 99998887777889999999988884 22 345555566666666653
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=290.70 Aligned_cols=250 Identities=17% Similarity=0.263 Sum_probs=199.2
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
+..++|+.|+|++++|+.+.+++.+.+.. |. ..+..++|+++++++ +++ ++ +|++|+|+++++..++
T Consensus 22 ~~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~~~y~-~~~~~~lr~~ia~~~----~~~--~~-~i~it~G~~~~l~~~~ 93 (351)
T PRK14807 22 PYKYKMDANETPFELPEEVIKNIQEIVKSSQVNIYP-DPTAEKLREELARYC----SVV--PT-NIFVGNGSDEIIHLIM 93 (351)
T ss_pred CceeEccCCCCCCCCCHHHHHHHHHHhhcCcccCCC-CccHHHHHHHHHHHh----CCC--cc-cEEEecCHHHHHHHHH
Confidence 45799999999999999999998886643 22 234566777777764 554 34 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++++|||+|++++|+|+.|...++..|++++.+++++ +|.+|++.+++.+++...+++++++|+ ||||.+++.+++
T Consensus 94 ~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~~k~v~l~~p~-NPtG~~~~~~~l 170 (351)
T PRK14807 94 LAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKE--DYTYDVGSFIKVIEKYQPKLVFLCNPN-NPTGSVIEREDI 170 (351)
T ss_pred HHhcCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCCCHHHHHHHhhccCCCEEEEeCCC-CCCCCCCCHHHH
Confidence 99999999999999999999999999999999999863 477999999999875333699999997 999999998887
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.++++ +++.++|+||+|.++ + +... .+. +... +++|+++||||+||+||+|+||++++++ ++
T Consensus 171 ~~l~~---~~~~~~ivDe~y~~~-~-~~~~-----~~~---~~~~----~~vi~~~S~SK~~~~~GlRiG~~v~~~~-~~ 232 (351)
T PRK14807 171 IKIIE---KSRGIVVVDEAYFEF-Y-GNTI-----VDV---INEF----ENLIVLRTLSKAFGLAGLRVGYAVANEN-IL 232 (351)
T ss_pred HHHHH---hCCCEEEEeCcchhh-c-ccch-----HHH---hhhC----CCEEEEecchHhcccchhceeeeecCHH-HH
Confidence 77765 456789999999765 2 3221 111 2222 4899999999999999999999999887 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+.+...+++.++|.++..+|. ++ ++++.++.+++||+.++
T Consensus 233 ~~~~~~~~~~~~~~~~q~~~~~~l~--~~-------~~~~~~~~~~~~r~~l~ 276 (351)
T PRK14807 233 KYLNLVKSPYNINSLSQVIALKVLR--TG-------VLKERVNYILNERERLI 276 (351)
T ss_pred HHHHHccCCCCcCHHHHHHHHHHHh--HH-------HHHHHHHHHHHHHHHHH
Confidence 9999887767788999999999994 22 34444455666666654
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=295.55 Aligned_cols=244 Identities=18% Similarity=0.186 Sum_probs=191.6
Q ss_pred ccCCCCCchHHHHHHHHHHHhhcCCCCCCC--CcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCE
Q 043334 643 RQNMSESEIDVTPSIQQYIKSNFGFPIDIN--AEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKAN 719 (903)
Q Consensus 643 ~y~~~~G~~~lr~ala~~l~~~~G~~~~pe--~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~ 719 (903)
.|.+..|.+++|+++++++.+..+ ..+++ ++|++|+|+++++..++.++++|||.|++++|+|+.|...+. ..|++
T Consensus 39 ~Y~~~~G~~~lr~~ia~~~~~~~~-~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~~~~~~~~g~~ 117 (388)
T PRK08637 39 PYAPPQGIPELRDLWQEKMLRENP-SLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYKLTFNTRRGAE 117 (388)
T ss_pred CCCCCCCCHHHHHHHHHHHhccCc-cccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHhcCCE
Confidence 377788999999999999987553 22222 379999999999999999999999999999999999999764 68999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhh---cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh-----CCcEEEEecCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK-----YGARVVIDTAFSG 791 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~---~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k-----~~i~VI~DeaY~~ 791 (903)
++.+|+..+ ++.+|++++++.++ +..+.+++++||| ||||.++|.+++++|+++|++ ++++||+||+|.+
T Consensus 118 vv~v~~~~~-~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~-NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~ 195 (388)
T PRK08637 118 IVTYPIFDE-DGGFDTDALKEALQAAYNKGKVIVILNFPN-NPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFG 195 (388)
T ss_pred EEEecccCC-CCcCCHHHHHHHHHhhccCCCEEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchh
Confidence 999998422 34589999998876 2333468888897 999999999999999999875 8999999999999
Q ss_pred CccCCCCCCCCchhhhhhhhccCCCCCCce--EEEccCchhcccccceeeEEEeCc-----HHHHHHHHhC-----C-CC
Q 043334 792 LEFNYEGWGGWDLEGCLSKLYSSTNSSFNV--SLLGGLSLKMLTGALKFGFLVLNH-----PQLVDAFSSF-----P-GL 858 (903)
Q Consensus 792 l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v--I~l~S~SK~~g~~GlRiG~lv~~~-----~~li~~l~~~-----~-~~ 858 (903)
+.|++... . ++...+.+. .+++ ++++||||.|++||+|+||++++. +++++.+.+. . ..
T Consensus 196 l~~~~~~~--~---~~~~~~~~~---~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (388)
T PRK08637 196 LFYEDSYK--E---SLFAALANL---HSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNI 267 (388)
T ss_pred cccCCccc--h---hhHHHhhcc---cccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhccc
Confidence 99977542 1 112222221 1354 556799999999999999999753 4477777641 1 24
Q ss_pred CCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 859 SKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 859 ~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++.+.|.++..+|. ++ .+.+++++.+..|++|++.+.
T Consensus 268 ~~~s~~~q~a~~~~l~--~~---~~~~~~~~~~~~~~~r~~~~~ 306 (388)
T PRK08637 268 SNGPHPSQSAVLRALN--SP---EFDKEKQEKFQILKERYEKTK 306 (388)
T ss_pred CCCCcHHHHHHHHHhC--CH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999994 33 456778888888999988764
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=295.14 Aligned_cols=249 Identities=16% Similarity=0.234 Sum_probs=198.1
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHH-HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDV-TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~l-r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~ 694 (903)
+.++|+.++|++++|+.+.. ..+..| |+. .+++++.+++++|++.+ +|++|+|+++++..++.++++
T Consensus 29 ~~~~l~~Nenp~~~~~~~~~---~~~~~Y------p~~~~~~l~~~~a~~~g~~~~---~I~~~~Gs~e~i~~~~~~~~~ 96 (351)
T PRK01688 29 GDVWLNANEYPTAVEFQLTQ---QTLNRY------PECQPKAVIENYAAYAGVKPE---QVLVSRGADEGIELLIRAFCE 96 (351)
T ss_pred CceEecCCCCCCCCChhhcc---cccccC------CCCChHHHHHHHHHHhCCCHH---HEEEcCCHHHHHHHHHHHhcC
Confidence 46999999999998875411 112223 222 25666677777787544 999999999999999999999
Q ss_pred CC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 695 EG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 695 pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
+| |.|+++.|+|+.|...++..|++++.+|+++ +|.+|++++++++ +++ +++++|||| ||||.+++.+++++|+
T Consensus 97 ~g~~~vli~~P~y~~y~~~~~~~G~~~~~v~~~~--~~~~d~~~l~~~~-~~~-~lv~l~nPn-NPTG~~~~~~~l~~l~ 171 (351)
T PRK01688 97 PGKDAILYCPPTYGMYSVSAETIGVEIRTVPTLD--NWQLDLPAIADNL-DGV-KVVYVCSPN-NPTGNLINPQDLRTLL 171 (351)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHcCCEEEEeecCC--CCCCCHHHHHHhc-cCC-cEEEEeCCC-CCCCCCCCHHHHHHHH
Confidence 97 8999999999999999999999999999964 5889999999887 455 599999998 9999999999999999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
+.|++ +++||+||+|.++. ... +....+... +++|+++||||.||++|+|+||++++++ +++.+.
T Consensus 172 ~~~~~-~~~vivDEay~~f~--~~~-------s~~~~~~~~----~n~iv~rSfSK~~glaGlRiGy~i~~~~-~i~~l~ 236 (351)
T PRK01688 172 ELTRG-KAIVVADEAYIEFC--PQA-------SLAGWLAEY----PHLVILRTLSKAFALAGLRCGFTLANEE-VINLLL 236 (351)
T ss_pred HhCCC-CcEEEEECchhhcC--CCC-------ChHHHHhhC----CCEEEEecchHhhcCHHHHHhHHhCCHH-HHHHHH
Confidence 99986 68899999996654 221 112222333 4899999999999999999999999887 999999
Q ss_pred hCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 854 SFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 854 ~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+....++++.+.|.++..+|. +.. .+++.+.++.++++|+.+.
T Consensus 237 ~~~~~~~v~~~~~~~a~~~L~--~~~----~~~~~~~~~~~~~~r~~l~ 279 (351)
T PRK01688 237 KVIAPYPLSTPVADIAAQALS--PQG----IAAMRERVAEINANRQWLI 279 (351)
T ss_pred hccCCCCCCHHHHHHHHHHHh--cch----HHHHHHHHHHHHHHHHHHH
Confidence 888777888999999998884 220 2456666666766666654
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-30 Score=292.48 Aligned_cols=277 Identities=14% Similarity=0.118 Sum_probs=220.2
Q ss_pred ccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcC
Q 043334 592 IGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFG 666 (903)
Q Consensus 592 ~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G 666 (903)
..++++.+..++.... ...++.++|+|+.|++++++++.+.+++.+.+.. |....|.+++|+++++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l----~ 80 (380)
T PRK06225 7 AKVPPSGFKTSNEFFD--YVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDL----G 80 (380)
T ss_pred cccCcchhhhHHHHHH--HHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc----C
Confidence 3445555555553211 0134568999999999999999999999888764 444567788888887764 6
Q ss_pred CCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC-CCCCcccCHHHHHHHhhcC
Q 043334 667 FPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE-SEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 667 ~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~-~~~~f~ld~~~L~~~l~~~ 745 (903)
++. + +|++|+|+++++..++.+++.+||+|++++|+|..+...++..|++++.++++ ++++|.+|++.+++.++++
T Consensus 81 ~~~--~-~v~~~~g~t~al~~~~~~~~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~ 157 (380)
T PRK06225 81 LDD--D-EALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDEN 157 (380)
T ss_pred CCC--C-cEEEeCCHHHHHHHHHHHhcCCCCEEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCC
Confidence 543 3 89999999999999999999999999999999999999999999999999985 3446899999999998876
Q ss_pred CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc
Q 043334 746 KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG 825 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~ 825 (903)
+ +++++++|+ ||||.++|.+++++|+++|+++|+++|+||+|.++..+. . . ...+.. ++++++.
T Consensus 158 ~-~~v~l~~p~-NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~-~-------~-~~~~~~-----~~~i~~~ 221 (380)
T PRK06225 158 T-RLIYLIDPL-NPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREH-T-------L-AAEYAP-----EHTVTSY 221 (380)
T ss_pred c-eEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccC-C-------c-hhhcCC-----CCEEEEe
Confidence 6 589999998 999999999999999999999999999999997654321 1 1 111211 4799999
Q ss_pred cCchhcccccceeeEEEeCcHHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 826 GLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 826 S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
||||.+|++|+|+||++++++ +++.+..... ..+.+.++|.++..+|. .. .++++++++.++++++.+
T Consensus 222 s~SK~~g~~G~RiG~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~l~--~~-----~~~~~~~~~~~~~~~~~l 290 (380)
T PRK06225 222 SFSKIFGMAGLRIGAVVATPD-LIEVVKSIVINDLGTNVIAQEAAIAGLK--VK-----DEWIDRIRRTTFKNQKLI 290 (380)
T ss_pred echhhcCCccceeEEEecCHH-HHHHHHHHHhcccCCCHHHHHHHHHHHh--cc-----hHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887 9998887653 66788999999988884 21 255666677776666654
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=291.47 Aligned_cols=237 Identities=18% Similarity=0.211 Sum_probs=199.5
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
.++|+|+.|++++++++.+.+++.+.+.. +.+..|..++|+++++++ |++ ++ +|++|+|+++++..++..+
T Consensus 22 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~g~~~lr~~ia~~~----~~~--~~-~I~~~~G~~~~l~~~~~~~ 94 (352)
T PRK03321 22 PGAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPDMGAVELRAALAEHL----GVP--PE-HVAVGCGSVALCQQLVQAT 94 (352)
T ss_pred ccceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCCCcHHHHHHHHHHHh----CcC--HH-HEEECCCHHHHHHHHHHHh
Confidence 46899999999998888999998876543 223568888888888876 443 44 8999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 693 ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
++|||.|+++.|+|..|...++..|++++.++++++ +.+|++.+++.+++++ +++++++|+ ||||.+++.+++.++
T Consensus 95 ~~~gd~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~--~~~~~~~l~~~~~~~~-~~v~l~~p~-NPtG~~~~~~~l~~l 170 (352)
T PRK03321 95 AGPGDEVIFAWRSFEAYPILVQVAGATPVQVPLTPD--HTHDLDAMAAAITDRT-RLIFVCNPN-NPTGTVVTPAELARF 170 (352)
T ss_pred cCCCCEEEeCCCCHHHHHHHHHHcCCEEEEccCCCC--CCCCHHHHHHhhccCC-CEEEEeCCC-CCcCCCcCHHHHHHH
Confidence 999999999999999999999999999999998743 5689999999987766 589999998 999999999998888
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
++.| +++++||+||+|.++.|++... +.+..+... +++++++||||.||+||+|+||++++++ +++.+
T Consensus 171 ~~~~-~~~~~ii~De~y~~~~~~~~~~------~~~~~~~~~----~~vi~~~S~SK~~g~~GlRiG~~v~~~~-~~~~~ 238 (352)
T PRK03321 171 LDAV-PADVLVVLDEAYVEYVRDDDVP------DGLELVRDH----PNVVVLRTFSKAYGLAGLRVGYAVGHPE-VIAAL 238 (352)
T ss_pred HHhC-CCCeEEEEechHHHhccCcCCC------cHHHHHhhC----CCEEEEecchHHhhhHHHhhhhhcCCHH-HHHHH
Confidence 8876 4799999999999888866432 112223222 4899999999999999999999999876 99999
Q ss_pred HhCCCCCCCcHHHHHHHHHHHh
Q 043334 853 SSFPGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 853 ~~~~~~~~~s~~~Q~aa~~~L~ 874 (903)
.+.....+++.++|.++..+|.
T Consensus 239 ~~~~~~~~~s~~~q~~a~~~l~ 260 (352)
T PRK03321 239 RKVAVPFSVNSLAQAAAIASLA 260 (352)
T ss_pred HHhcCCCCCCHHHHHHHHHHhc
Confidence 9877678899999999998884
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=286.73 Aligned_cols=227 Identities=21% Similarity=0.319 Sum_probs=187.6
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
+.+.|+|+.|+|++++|+.+.+++.+++.. | +..|.+++|+++++++ |+ +++ +|++|+|+++++..+
T Consensus 17 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~----~~--~~~-~I~~t~G~~~~l~~~ 88 (337)
T PRK03967 17 GNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRY-PHITSDPLREAIAEFY----GL--DAE-NIAVGNGSDELISYL 88 (337)
T ss_pred CCceEEecCCCCCCCCCHHHHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHh----Cc--Ccc-eEEEcCCHHHHHHHH
Confidence 457899999999999999999998887643 3 3468888999888876 44 444 999999999999988
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+..+ +||+|+++.|+|+.|...++..|++++.++++. +|.+|++.+++.+ +++ +++++++|+ ||||.+++.++
T Consensus 89 ~~~~--~gd~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~-~~~-~~v~~~~P~-NPtG~~~~~~~ 161 (337)
T PRK03967 89 VKLF--EGKHIVITPPTFGMYSFYAKLNGIPVIDVPLKE--DFTIDGERIAEKA-KNA-SAVFICSPN-NPTGNLQPEEE 161 (337)
T ss_pred HHHh--CCCeEEEeCCChHHHHHHHHHcCCeEEEeecCC--CCCcCHHHHHHhc-cCC-CEEEEeCCC-CCCCCCCCHHH
Confidence 7766 799999999999999999999999999999864 4779999998865 345 488899997 99999999877
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+.+++ +++++||+||+|.++. +... ....... +++|+++||||+||+||+|+||++++++ +
T Consensus 162 l~~i~----~~~~~ii~De~y~~~~--~~~~--------~~~~~~~----~~vi~l~S~SK~~~l~GlRiG~iv~~~~-~ 222 (337)
T PRK03967 162 ILKVL----ETGKPVVLDEAYAEFS--GKSL--------IGLIDEY----PNLILLRTFSKAFGLAGIRAGYAIANEE-I 222 (337)
T ss_pred HHHHH----hcCCEEEEECchhhhc--ccch--------HHHHhhC----CCEEEEecchHhhcchhhhheeeecCHH-H
Confidence 76664 4699999999998754 2211 1111222 4799999999999999999999999887 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~ 874 (903)
++++.+....++++.+.|.++..+|+
T Consensus 223 i~~~~~~~~~~~~~~~~q~~~~~~l~ 248 (337)
T PRK03967 223 IDALYRIKPPFSLNILTMKIVRLALD 248 (337)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 99999887777889999999999994
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=290.92 Aligned_cols=252 Identities=19% Similarity=0.246 Sum_probs=199.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE 695 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p 695 (903)
+.++++.+++++++++... ..+..|... +.+++|+++++++ |++ ++ +|++|+|+++++..++.+++.+
T Consensus 32 ~~~~~~~ne~~~~~~~~~~----~~~~~Y~~~-~~~~lr~~ia~~~----~~~--~~-~I~~t~G~~~~l~~~~~~~~~~ 99 (364)
T PRK04781 32 GDVWLNANESAWANPADPD----ASTRRYPDP-QPPGLRSALAALY----GCA--PE-QLLIGRGSDEAIDLLVRALCVP 99 (364)
T ss_pred CCEEeeCCCCCCCCChhhc----chhccCCCC-CHHHHHHHHHHHh----CcC--hH-HEEEeCCHHHHHHHHHHHhcCC
Confidence 4689999999888775321 123455443 4678888888765 554 44 9999999999999999999999
Q ss_pred C-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCCcccCHHHHHHHh-hcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 696 G-GTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVGFKMTEKTLVTIL-ETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 696 G-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~f~ld~~~L~~~l-~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
| |.|++++|+|+.|...++..|++++.+|++. +++|.+|++++.+.+ .+++ +++++++|| ||||.+++.++++++
T Consensus 100 g~~~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~-~lv~l~~p~-NPTG~~~~~~~~~~l 177 (364)
T PRK04781 100 GRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNA-KLVFLCSPS-NPAGSAIALDQIERA 177 (364)
T ss_pred CCCeEEEcCCChHHHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCC-eEEEEcCCC-CCCCCCcCHHHHHHH
Confidence 9 7999999999999999999999999999853 457888999886554 4444 699999998 999999999999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
++.|+ ++++||+||+|.++.++.. .....+.. +++|+++||||+||+||+|+||++++++ +++.+
T Consensus 178 ~~~~~-~~~~iI~Deay~~f~~~~~---------~~~~~~~~----~~vi~~~SfSK~~gl~GlRvGy~v~~~~-l~~~l 242 (364)
T PRK04781 178 LQALQ-GKALVVVDEAYGEFSDVPS---------AVGLLARY----DNLAVLRTLSKAHALAAARIGSLIANAE-LIAVL 242 (364)
T ss_pred HHhCC-CCcEEEEeCcchhhcCCcc---------hHHHHhhC----CCEEEEecChhhcccccceeeeeeCCHH-HHHHH
Confidence 99986 4789999999987765321 11222222 4899999999999999999999999987 99999
Q ss_pred HhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 853 SSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 853 ~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+..++.+++.|.++..+|. ++. .++..+..+.++++|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~a~~~l~--~~~----~~~~~~~~~~~~~~r~~l~ 286 (364)
T PRK04781 243 RRCQAPYPVPTPCAALAEQALS--APA----LAVTARRVAEVRAERERLH 286 (364)
T ss_pred HhccCCCCCCHHHHHHHHHHHh--ccc----HHHHHHHHHHHHHHHHHHH
Confidence 9998888889999999999994 331 1334444456777777664
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=287.41 Aligned_cols=236 Identities=16% Similarity=0.207 Sum_probs=186.5
Q ss_pred CCeEEccCCCCCCCCcH-HHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 615 SGLIHMDVDQSFLPIPS-LVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~-~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
.++|+|+.|++++++|+ .+.+ .++..|.. +..+||+++++++ |. + +|++|+|++++|..++ .+
T Consensus 20 ~~~i~l~~ne~p~~~~~~~~~~---~~~~~yp~--~~~~Lr~~ia~~~----~~----~-~I~it~Gs~~al~~~~--~~ 83 (330)
T PRK05664 20 ADWLDLSTGIAPWPWPVPAIPA---DAWARLPE--TDDGLEAAARAYY----GA----P-QLLPVAGSQAAIQALP--RL 83 (330)
T ss_pred HHheeecCCcCCCCCCCcccCH---HHHHhCCC--ChHHHHHHHHHHh----CC----C-CEEECcCHHHHHHHHH--Hc
Confidence 35799999988876553 2222 33444533 4477888877765 42 3 8999999999999875 45
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
.+||+|++++|+|+.|...++..|++++.+|++ .+++.++ ++ ++++++||| ||||.++|.+++++|+
T Consensus 84 ~~gd~v~v~~P~y~~~~~~~~~~g~~~~~v~~~----------~~~~~~~-~~-~~v~l~nP~-NPTG~~~s~~~l~~l~ 150 (330)
T PRK05664 84 RAPGRVGVLSPCYAEHAHAWRRAGHQVRELDEA----------EVEAALD-SL-DVLVVVNPN-NPTGRRFDPARLLAWH 150 (330)
T ss_pred cCCCEEEEcCCChHHHHHHHHHcCCeEEEechh----------hHhhhhc-CC-CEEEEeCCc-CCCCCccCHHHHHHHH
Confidence 799999999999999999999999999999863 2344443 44 489999998 9999999999999999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
++|++++++||+||+|.++. ... + +..+.. .+++|+++||||+||+||+|+||++++++ +++.+.
T Consensus 151 ~~~~~~~~~iI~DE~y~~~~--~~~-------s-~~~~~~----~~~vi~~~SfSK~~gl~GlRiG~~v~~~~-l~~~~~ 215 (330)
T PRK05664 151 ARLAARGGWLVVDEAFMDNT--PQH-------S-LAACAH----RPGLIVLRSFGKFFGLAGARLGFVLAEPA-LLRALA 215 (330)
T ss_pred HHHHhcCCEEEEECCcccCC--Ccc-------c-cccccc----CCCEEEEeeccccccCCCcceEEEEeCHH-HHHHHH
Confidence 99999999999999996442 211 1 122222 25899999999999999999999999987 999999
Q ss_pred hCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 854 SFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 854 ~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.......+.+.|.++..+|. +. .+.+.+++.+++||+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~L~--~~------~~~~~~~~~~~~~r~~l~ 256 (330)
T PRK05664 216 ELLGPWTVSGPTRWLAQAALA--DT------PWQRRQRERLLAASQRLA 256 (330)
T ss_pred HhcCCCCCCHHHHHHHHHHHh--Ch------HHHHHHHHHHHHHHHHHH
Confidence 887767788999999999994 32 445678888998888875
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=288.79 Aligned_cols=257 Identities=17% Similarity=0.180 Sum_probs=210.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++++|+.|+|++++++.+.+++.+.+.. |... +..++|+++++++ |++ ++ +|++|+|+++++..++
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-~~~~lr~~ia~~~----~~~--~~-~i~~t~G~~~~l~~~~ 101 (367)
T PRK02731 30 GIADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG-SGFELKAALAEKF----GVD--PE-RIILGNGSDEILELLA 101 (367)
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-cHHHHHHHHHHHh----CcC--HH-HEEEcCCHHHHHHHHH
Confidence 5667999999999998888888888877643 3322 3356777777664 554 33 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.+++++||.|++++|+|..|...++..|++++.++++ +|.+|++.+++.+++++ ++|++++|+ ||||.+++.+++
T Consensus 102 ~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~v~l~~p~-nptG~~~~~~~l 176 (367)
T PRK02731 102 RAYLGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK---DYGHDLDAMLAAVTPRT-RLVFIANPN-NPTGTYLPAEEV 176 (367)
T ss_pred HHhcCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc---CCCCCHHHHHHHhCCCC-cEEEEeCCC-CCCCcCCCHHHH
Confidence 9999999999999999999999999999999999983 46799999999988666 589999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.+|++.|+ +|++||+||+|.++.+++...+ .+..++.. +++|+++||||.||++|+|+||++++++ ++
T Consensus 177 ~~l~~~~~-~~~~li~De~y~~~~~~~~~~~------~~~~~~~~----~~~i~~~S~SK~~g~~G~RiG~l~~~~~-~~ 244 (367)
T PRK02731 177 ERFLAGVP-PDVLVVLDEAYAEYVRRKDYED------GLELVAKF----PNVVVTRTFSKAYGLAGLRVGYGIAPPE-II 244 (367)
T ss_pred HHHHHhCC-CCcEEEEECcHHHhccCcCccc------HHHHHhhc----CCEEEEeeehHhhcCcccceeeeeCCHH-HH
Confidence 99999875 6999999999988887654321 12222221 4899999999999999999999999987 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.+.....+.+.++|.++..+|. +. +++++.++.++++++.+.
T Consensus 245 ~~l~~~~~~~~~~~~~~~~a~~~l~--~~------~~~~~~~~~~~~~~~~l~ 289 (367)
T PRK02731 245 DALNRVRQPFNVNSLALAAAVAALD--DD------AFVEKSRALNAEGMAWLT 289 (367)
T ss_pred HHHHHccCCCCCCHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHHH
Confidence 9998877767788999999999994 22 567777888888877664
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=276.40 Aligned_cols=280 Identities=19% Similarity=0.259 Sum_probs=232.8
Q ss_pred CCCCeEEccCCCCCCCC---cHHHHH------------HHHHHHHccCCCCCchHHHHHHHHHHHhhcCC--CCCCCCcE
Q 043334 613 PNSGLIHMDVDQSFLPI---PSLVKA------------AIFESFARQNMSESEIDVTPSIQQYIKSNFGF--PIDINAEF 675 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~---p~~v~~------------al~~al~~y~~~~G~~~lr~ala~~l~~~~G~--~~~pe~~I 675 (903)
++.++|.|+..+|.+.. -.++.+ .....+..|..-.|.+.+|+++++++.+..|- +.+|+ ++
T Consensus 71 Np~GiIQmGlaENqlc~DL~~~wl~k~~~~~~~~~eg~~~f~~la~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~-~~ 149 (471)
T KOG0256|consen 71 NPLGIIQMGLAENQLCFDLIESWLSKNPEASNCTREGQSSFDELAMFQDYHGLPSFRQAVAEFMERARGNRVKFDPE-RV 149 (471)
T ss_pred CchHHHHhhhhhhHHHHHHHHHHHHhChhhhhcccccccchhhHhhcccccCchHHHHHHHHHHHHHhCCCCccCcc-ce
Confidence 45578999998887531 111111 11112333556679999999999999988774 57888 89
Q ss_pred EecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcE
Q 043334 676 IYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPW 749 (903)
Q Consensus 676 ~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~ 749 (903)
++++|++.+...+..+|++|||..++|.|.|+++..-++ ..|+++++|.+..+++|+++.+++++++.. .+.+.
T Consensus 150 Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkG 229 (471)
T KOG0256|consen 150 VVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKG 229 (471)
T ss_pred EEecccchhhHHHHHHhcCCCceeeecCCCCCcccccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeE
Confidence 999999999999999999999999999999999988776 469999999999999999999999988764 34568
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
|+++||+ ||.|.+++++++..++++|.++|++||+||+|+..+|+... +.+..++.....-. .+++.+++|+||
T Consensus 230 vlitNPs-NPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~--F~Sv~ev~~~~~~~---~~rvHivyslSK 303 (471)
T KOG0256|consen 230 VLITNPS-NPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSE--FRSVLEVRKDPHLD---PDRVHIVYSLSK 303 (471)
T ss_pred EEEeCCC-CCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccC--ceEHHHHhhccccC---CCcEEEEEEecc
Confidence 9999997 99999999999999999999999999999999999998774 35554544433212 269999999999
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHhC
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLKE 903 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~e 903 (903)
.+|+||+|+|.+...++.++.+.+++.....+|+..|+.++.+|+ +. ...+.++.+.+++++.|.+++.+
T Consensus 304 D~GlpGfRvGviYS~ne~VvsaA~kmssf~~vSs~tQ~~la~LLS--D~--~f~~~yl~en~~Rl~~rh~~~~~ 373 (471)
T KOG0256|consen 304 DFGLPGFRVGVIYSNNEDVVSAATKMSSFGLVSSQTQYLLASLLS--DE--EFTREYLRENNKRLRIRHRYIVE 373 (471)
T ss_pred ccCCCceEEEEEEecChHHHHHHHHHhhccCCcHHHHHHHHHHhc--hH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998999999999999999999999999995 22 34578899999999999888753
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=274.15 Aligned_cols=249 Identities=17% Similarity=0.170 Sum_probs=208.5
Q ss_pred ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEE
Q 043334 643 RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVN 722 (903)
Q Consensus 643 ~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~ 722 (903)
+|+.++|.+++...+.++..-....+...+++|++|+|.+.++..+++.+|++||.|+++.++|+......+..|+++++
T Consensus 95 QYg~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~AL~s~~a~gv~~ip 174 (472)
T KOG0634|consen 95 QYGQSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSALQSMEALGVKIIP 174 (472)
T ss_pred ccccccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHHHHhccccCceEEe
Confidence 68889999999999988665233334334679999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccCHHHHHHHhhcC-------CCcEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCcc
Q 043334 723 IPTESEVGFKMTEKTLVTILETV-------KKPWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~-------~~~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f 794 (903)
|+++.+ | ++++.|++.+..+ .++-|++|-|+ |||||..+|.+++++|+++|+||+++||+||+|..|.|
T Consensus 175 v~md~~-G--i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~ 251 (472)
T KOG0634|consen 175 VKMDQD-G--IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQM 251 (472)
T ss_pred ccccCC-C--CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeec
Confidence 999753 3 8999999988754 23679999999 99999999999999999999999999999999999988
Q ss_pred CCCC------CCCCchhhh-------hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CC
Q 043334 795 NYEG------WGGWDLEGC-------LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LS 859 (903)
Q Consensus 795 ~~~~------~s~~s~~~~-------~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~ 859 (903)
+... .+..+-..+ +..++ .++|||.+.||||.++ ||+|+||+.+++. +++.+.+..+ +.
T Consensus 252 ~~y~~~~~~~~p~~s~~~f~k~l~~sflslD----tdGrVIr~dSFSKiia-PGlRlG~it~~~~-~l~ril~~ae~~t~ 325 (472)
T KOG0634|consen 252 NTYNPSLELESPAHSSSMFLKSLVPSFLSLD----TDGRVIRNDSFSKIIA-PGLRLGWITGNSL-FLKRILDLAEVATS 325 (472)
T ss_pred cccCCCccccCccccHHHHHHhhcCCccccc----ccccEEeccchhhhhc-CcceeEEeecCHH-HHHHHhhhcceeec
Confidence 7411 011111111 11222 2479999999999996 9999999999998 8898888776 78
Q ss_pred CCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 860 KPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 860 ~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++..+|.++.++|. .++ .+++.+|+.+++..|..||+.+.
T Consensus 326 ~pSg~sq~iv~a~l~-~wg-qeG~~~wi~~l~~~Yt~Rrn~~l 366 (472)
T KOG0634|consen 326 GPSGFSQGIVYAMLK-RWG-QEGFLRWIQHLRSSYTERRNALL 366 (472)
T ss_pred CcccccHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999995 455 46788999999999999999875
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=284.83 Aligned_cols=239 Identities=15% Similarity=0.170 Sum_probs=185.6
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~ 694 (903)
.++++|+.++|++++|+..... ..+..|... ..+|+ +.+++++|++ +++ +|++|+|+++++..+.. +++
T Consensus 24 ~~~i~ls~Nenp~~~~~~~~~~--~~~~~Yp~~--~~~L~----~~ia~~~~~~-~~~-~I~i~~Gs~e~i~~l~~-~~~ 92 (339)
T PRK06959 24 DAWLDLSTGINPHGYPVPPVPA--DAWRRLPED--DDGLA----ACAARYYGAP-DAA-HVLPVAGSQAAIRALPA-LLP 92 (339)
T ss_pred hhhceeccCCCCCCCCCCCCCH--HHHHhCCCc--hHHHH----HHHHHHhCCC-Ccc-cEEECcCHHHHHHHHHH-hcC
Confidence 4689999999998876322211 234445322 24444 4555567875 234 89999999999997654 578
Q ss_pred CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHH
Q 043334 695 EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILT 774 (903)
Q Consensus 695 pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ 774 (903)
+|| |++++|+|+.|...++..|++++.++++. +.+. +.. +++++|||| ||||.++|.+++++|++
T Consensus 93 ~g~-v~v~~P~y~~y~~~~~~~g~~~~~v~~~~--------~~~~----~~~-~~v~l~nPn-NPTG~~~s~~~l~~l~~ 157 (339)
T PRK06959 93 RGR-VGIAPLAYSEYAPAFARHGHRVVPLDEAA--------DTLP----AAL-THLIVVNPN-NPTAERLPAARLLRWHA 157 (339)
T ss_pred CCe-EEEcCCCcHHHHHHHHHCCCEEEeecccc--------hhcc----ccC-CEEEEeCCC-CCCCCCCCHHHHHHHHH
Confidence 877 88999999999999999999999998753 1221 223 489999998 99999999999999999
Q ss_pred HHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 775 VCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 775 ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
.|++++.+||+||+|.++.+. . +.. .+... +++|+++||||.||+||+|+||++++++ +++.+.+
T Consensus 158 ~~~~~~~~vI~DEay~~~~~~--~-------s~~-~~~~~----~~vi~l~SfSK~~gl~GlRiGy~v~~~~-li~~l~~ 222 (339)
T PRK06959 158 QLAARGGTLIVDEAFADTLPA--A-------SLA-AHTDR----PGLVVLRSVGKFFGLAGVRAGFVLAAPA-LLAALRD 222 (339)
T ss_pred HHHHcCCEEEEECCCccCCCc--c-------cch-hccCC----CCEEEEecChhhcCCcchheEEEecCHH-HHHHHHH
Confidence 999999999999999876532 1 111 12122 4799999999999999999999999987 9999999
Q ss_pred CCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 855 FPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 855 ~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
....++.+.+.|.++..+|+ ++ ++.++.++.|+++|+.+.
T Consensus 223 ~~~~~~vs~~~q~a~~~~L~--~~------~~~~~~~~~~~~~r~~l~ 262 (339)
T PRK06959 223 ALGAWTVSGPARHAVRAAFA--DA------AWQAAMRERLAADGARLA 262 (339)
T ss_pred hcCCCCCcHHHHHHHHHHhC--cH------HHHHHHHHHHHHHHHHHH
Confidence 88777789999999999994 33 566778888988888775
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=276.57 Aligned_cols=237 Identities=18% Similarity=0.253 Sum_probs=183.9
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
..++|+|+.|+|+++ |+.+.+++.+++.... +++. ...+++.+++++| + +|++|+|+++++..++..+
T Consensus 7 ~~~~i~l~~~~np~~-p~~~~~a~~~~~~~~~---~yp~-~~~l~~~ia~~~~---~---~I~vt~G~~~al~~~~~~~- 74 (311)
T PRK08354 7 EEGLIDFSASVNPYP-PEWLDEMFERAKEISG---RYTY-YEWLEEEFSKLFG---E---PIVITAGITEALYLIGILA- 74 (311)
T ss_pred ccceeEecCCCCCCC-CHHHHHHHHHHHHHhh---cCCC-hHHHHHHHHHHHC---C---CEEECCCHHHHHHHHHHhh-
Confidence 456999999998886 5788888877654321 1221 2334455555555 2 6999999999999877544
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
.+||.|++++|+|+.|...++..|++++.++ +|++.+++.++ ++ +++++++|| ||||.+++.+++++|+
T Consensus 75 ~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~--------~d~~~l~~~~~-~~-~~vi~~~P~-NPTG~~~~~~~l~~l~ 143 (311)
T PRK08354 75 LRDRKVIIPRHTYGEYERVARFFAARIIKGP--------NDPEKLEELVE-RN-SVVFFCNPN-NPDGKFYNFKELKPLL 143 (311)
T ss_pred CCCCeEEEeCCCcHHHHHHHHHcCCEEeecC--------CCHHHHHHhhc-CC-CEEEEecCC-CCCCCccCHHHHHHHH
Confidence 5999999999999999999999999997764 56888888776 34 589999998 9999999999999999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
++|+++|++||+||+|.++.|++... . . +++|+++||||+|++||+|+||+++ +++.+.
T Consensus 144 ~~a~~~~~~li~De~y~~f~~~~~~~------------~-~----~~vi~~~S~SK~~~l~GlRiG~~v~----~~~~l~ 202 (311)
T PRK08354 144 DAVEDRNALLILDEAFIDFVKKPESP------------E-G----ENIIKLRTFTKSYGLPGIRVGYVKG----FEEAFR 202 (311)
T ss_pred HHhhhcCcEEEEeCcchhcccccccc------------C-C----CcEEEEeccHhhcCCccceeeeeee----hHHHHH
Confidence 99999999999999999888865321 1 1 4899999999999999999999998 456677
Q ss_pred hCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 854 SFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 854 ~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+.......+...|.++..+++ +. .+++.+.++.++++++.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~l 243 (311)
T PRK08354 203 SVRMPWSIGSTGYAFLEFLIE--DD-----FEHLRKTMPLIWREKERF 243 (311)
T ss_pred HcCCCccCCHHHHHHHHHHHH--hH-----HHHHHHHHHHHHHHHHHH
Confidence 666666667777777777773 22 145556666666666655
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=284.92 Aligned_cols=250 Identities=17% Similarity=0.246 Sum_probs=198.2
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
+.+.++|+.|+|++++++.+ ....+..|... +.+++|++++++ +|++.+ +|++|+|+++++..++.+++
T Consensus 30 ~~~~~~l~~ne~~~~~~~~~---~~~~~~~Yp~~-~~~~Lr~aia~~----~~~~~~---~I~it~Gs~~~i~~~~~~~~ 98 (354)
T PRK04635 30 GRGDIWINANESPFNNEYKL---DLARLNRYPEC-QPPELINAYSAY----AGVAPE---QILTSRGADEAIELLIRAFC 98 (354)
T ss_pred CCCcEEeeCCCCCCCCChhh---hhHHhccCCCC-CHHHHHHHHHHH----hCcCHH---HEEEeCCHHHHHHHHHHHhc
Confidence 34679999999999888653 11234455443 578888888875 466544 99999999999999999999
Q ss_pred cCC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 694 LEG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 694 ~pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
+|| |.|++++|+|+.|...++..|++++.+|++. +|.+|++.+++ + +++ ++|++|||| ||||.+++.+++++|
T Consensus 99 ~~g~d~vlv~~P~y~~y~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~-~-~~~-~li~i~nP~-NPTG~~~~~~~l~~l 172 (354)
T PRK04635 99 EPGQDSIACFGPTYGMYAISAETFNVGVKALPLTA--DYQLPLDYIEQ-L-DGA-KLVFICNPN-NPTGTVIDRADIEQL 172 (354)
T ss_pred CCCCCeEEEcCCChHHHHHHHHHcCCEEEEEecCC--CCCCCHHHHHh-c-cCC-CEEEEeCCC-CCCCccCCHHHHHHH
Confidence 999 8999999999999999999999999999963 57789998874 3 455 599999998 999999999999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
++.|+ +++||+||+|.++... . +. ....... +++|+++||||.||+||+|+||++++++ +++.+
T Consensus 173 ~~~~~--~~~vivDeay~~~~~~--~----s~---~~~~~~~----~~~iv~~S~SK~~~l~GlRlG~~i~~~~-~~~~l 236 (354)
T PRK04635 173 IEMTP--DAIVVVDEAYIEFCPE--Y----SV---ADLLASY----PNLVVLRTLSKAFALAGARCGFTLANEE-LIEIL 236 (354)
T ss_pred HHhCC--CcEEEEeCchHhhccC--c----ch---HHHHhhC----CCEEEEechHHHhhhhHHHHhhhhCCHH-HHHHH
Confidence 99876 4999999999765422 1 11 1111222 4799999999999999999999999887 99999
Q ss_pred HhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 853 SSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 853 ~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.....+.+.+.|.++..+|. ..+ .+++.+.++.++++|+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~a~~~l~-~~~-----~~~~~~~~~~~~~~r~~l~ 280 (354)
T PRK04635 237 MRVIAPYPVPLPVSEIATQALS-EAG-----LARMKFQVLDLNAQGARLQ 280 (354)
T ss_pred HhhcCCCCCCHHHHHHHHHHHh-ccc-----HHHHHHHHHHHHHHHHHHH
Confidence 8876677788899999999994 222 2345666777777777664
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=280.06 Aligned_cols=255 Identities=18% Similarity=0.299 Sum_probs=208.3
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++|+|++|+|++++|+.+.+++.++.. .|....| +++|+++++++ |++ ++ +|++|+|+++++..++
T Consensus 17 ~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~-~~lr~~ia~~~----~~~--~~-~i~~~~G~~~~l~~~~ 88 (346)
T TIGR01141 17 GGKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDPDP-AELKQALADYY----GVD--PE-QILLGNGSDEIIELLI 88 (346)
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCCCH-HHHHHHHHHHh----CcC--hH-HEEEcCCHHHHHHHHH
Confidence 346799999999999999999999888753 2443333 67777777665 443 34 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.+++++||+|++++|+|+.+...++..|++++.++++. ++.+|++.+++.+.+++ ++|++++|+ ||||.+++.+++
T Consensus 89 ~~l~~~gd~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~~~~~~-~~v~l~~p~-NptG~~~~~~~~ 164 (346)
T TIGR01141 89 RAFLEPGDAVLVPPPTYSMYEISAKIHGAEVVKVPLDE--DGQLDLEDILVAIDDKP-KLVFLCSPN-NPTGNLLSRSDI 164 (346)
T ss_pred HHhcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEeccCC--CCCCCHHHHHHhcCCCC-CEEEEeCCC-CCCCCCCCHHHH
Confidence 99999999999999999999999999999999999975 36799999999877666 589999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.++++.|+ +++++|+||+|..+.+++.. . +.. ... +++++++||||.||++|+|+||++++++ ++
T Consensus 165 ~~l~~~~~-~~~~ii~D~~y~~~~~~~~~---~---~~~---~~~----~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~ 229 (346)
T TIGR01141 165 EAVLERTP-EDALVVVDEAYGEFSGEPST---L---PLL---AEY----PNLIVLRTLSKAFGLAGLRIGYAIANAE-II 229 (346)
T ss_pred HHHHHhCC-CCcEEEEECchhhhcCCccH---H---HHH---hhC----CCEEEEehhhHhhhchhhhceeeecCHH-HH
Confidence 99999887 79999999999866543211 1 112 122 3699999999999999999999999877 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+......++.+.++|.++..++. +. .++.+.++.++++++.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 274 (346)
T TIGR01141 230 DALNKVRAPFNLSRLAQAAAIAALR--DD------DFIEKTVEEINAERERLY 274 (346)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHHH
Confidence 9998877777788999999999884 22 256677777777777664
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-29 Score=278.26 Aligned_cols=240 Identities=17% Similarity=0.128 Sum_probs=182.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE 695 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p 695 (903)
.+|+|+.++|+++.. ..+..|. ..-..+||++++++ +|++.. +|++|+|+++++..++. +++|
T Consensus 17 ~~i~l~~Nenp~~~~--------~~~~~Yp-~~~~~~lr~~ia~~----~~~~~~---~I~it~Gs~~~l~~~~~-~~~~ 79 (332)
T PRK06425 17 RIIDFSANINDFMDI--------GDISIYP-EISYTDIEDQIKIY----TQGLKI---KVLIGPGLTHFIYRLLS-YINV 79 (332)
T ss_pred CEEEeccccCCCcCh--------hhcccCc-CcCHHHHHHHHHHH----hCCCcc---eEEECCCHHHHHHHHHH-HhCC
Confidence 689999999998522 1223342 22355666666654 566543 89999999999999886 5677
Q ss_pred CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHH
Q 043334 696 GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTV 775 (903)
Q Consensus 696 GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~i 775 (903)
|+ |++++|+|+.|...++..|++++.+|++. +.+|.+.+++ .++ +++++|||| ||||.++|.+++++|+++
T Consensus 80 ~~-vv~~~P~y~~y~~~~~~~G~~v~~vp~~~---~~~~~~~l~~---~~~-k~v~l~nP~-NPTG~~~s~~~~~~l~~~ 150 (332)
T PRK06425 80 GN-IIIVEPNFNEYKGYAFTHGIRISALPFNL---INNNPEILNN---YNF-DLIFIVSPD-NPLGNLISRDSLLTISEI 150 (332)
T ss_pred Cc-EEEeCCChHHHHHHHHHcCCeEEEEeCCc---ccCcHHHHhh---cCC-CEEEEeCCC-CCcCCccCHHHHHHHHHH
Confidence 64 77779999999999999999999999964 3356666553 244 599999998 999999999999999999
Q ss_pred HHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC
Q 043334 776 CAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 776 a~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~ 855 (903)
|++++++||+||+|.++.+++.. +.....+.. +++|+++||||+||+||+|+||++++++ +++.+.+.
T Consensus 151 a~~~~~~iI~DE~Y~~~~~~~~~-------~~~~~~~~~----~~vi~~~SfSK~~~l~GlRiGy~v~~~~-li~~l~~~ 218 (332)
T PRK06425 151 CRKKGALLFIDEAFIDFVPNRAE-------EDVLLNRSY----GNVIIGRSLTKILGIPSLRIGYIATDDY-NMKISRKI 218 (332)
T ss_pred HHHcCCEEEEecchhccccccch-------hHHHHhccC----CCEEEEeecHHhcCCchhhheeeecCHH-HHHHHHHc
Confidence 99999999999999988775421 122222222 4899999999999999999999999987 99999987
Q ss_pred CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 856 PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 856 ~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
......+.+. ..++. .+ ..+.+++++++.|++||+.++
T Consensus 219 ~~~~~~~~~~----~~~l~--~~---~~~~~~~~~~~~~~~~r~~l~ 256 (332)
T PRK06425 219 TEPWSVCDPA----IDFIR--SI---DLDYVAKHSLDIMENERSYLI 256 (332)
T ss_pred CCCCccCHHH----HHHHH--Hh---hhHHHHHHHHHHHHHHHHHHH
Confidence 6544444433 23342 11 124567788999999999875
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=279.89 Aligned_cols=252 Identities=16% Similarity=0.217 Sum_probs=202.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEe-cCchHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIY-ADCSQSLFNKL 688 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~v-t~Gs~~al~~l 688 (903)
.+.++|+|+.|+|++++++.+++++.+.+.. |... +.+++|++++++ +|++. + +|++ |+|+++++..+
T Consensus 32 ~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~lr~~ia~~----~~~~~--~-~i~~~~~Ga~~~i~~~ 103 (361)
T PRK00950 32 DPESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-DAPELREALSKY----TGVPV--E-NIIVGGDGMDEVIDTL 103 (361)
T ss_pred CccceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHH----hCCCH--H-HEEEeCCCHHHHHHHH
Confidence 4458999999999999999998888776543 3222 336667776665 46543 3 8999 89999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+.+++++||.|++++|+|+.|...++..|++++.++.+ ++|.+|++.+++.+++++ +++++++|+ ||||.+++.++
T Consensus 104 ~~~~~~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~v~~~~p~-nptG~~~~~~~ 179 (361)
T PRK00950 104 MRTFIDPGDEVIIPTPTFSYYEISAKAHGAKPVYAKRE--EDFSLDVDSVLNAITEKT-KVIFLCTPN-NPTGNLIPEED 179 (361)
T ss_pred HHHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEeecC--CCCCcCHHHHHHHhccCC-CEEEEeCCC-CCCCCCcCHHH
Confidence 99999999999999999999999999999999999854 467899999999887665 589999998 99999999776
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+.+| |+++|++||+||+|.++. +... .+. +... +++++++||||+||+||+|+||++++++ +
T Consensus 180 l~~l---~~~~~~~li~De~y~~~~--~~~~-----~~~---~~~~----~~vi~~~S~SK~~g~~GlRiG~~~~~~~-~ 241 (361)
T PRK00950 180 IRKI---LESTDALVFVDEAYVEFA--EYDY-----TPL---ALEY----DNLIIGRTFSKVFGLAGLRIGYGFVPEW-L 241 (361)
T ss_pred HHHH---HHHCCcEEEEECchhhhC--ccch-----HHH---HHhc----CCEEEEEeehHhhcCchhhcchhcCCHH-H
Confidence 6655 567799999999997654 2211 111 1222 4799999999999999999999999987 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+.+....++.+.+.|.++..+|. +. +++++.++.++++|+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~a~~~l~--~~------~~~~~~~~~~~~~r~~l~ 287 (361)
T PRK00950 242 IDYYMRAKTPFSLTRLSQAAAIAALS--DK------EYIEKSIEHGIKSREYLY 287 (361)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 99998887767788999999999994 22 567777788888888765
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=274.80 Aligned_cols=248 Identities=16% Similarity=0.132 Sum_probs=196.4
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+++++||+.|+|++++|+.+++++.+.+. .|.+..|.+++|+++++++ |++ ++ +|++|+|+++++..++
T Consensus 20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~----~~~--~~-~I~it~Ga~~al~~~~ 92 (349)
T PRK07908 20 AGPGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPSTEDERRARAAVAARH----GRT--PD-EVLLLAGAAEGFALLA 92 (349)
T ss_pred CCCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCccchHHHHHHHHHHh----CcC--hh-hEEECCCHHHHHHHHH
Confidence 467899999999999999999999887653 3655678899999998875 554 44 9999999999999888
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
. +++| .++++.|+|..+...++..|++++.++++. +|.+|++.++ +++ ++++++||+ ||||.++|.+++
T Consensus 93 ~--l~~~-~viv~~P~y~~~~~~~~~~G~~i~~v~~~~--~~~~d~~~l~----~~~-~~i~l~np~-NPTG~~~~~~~l 161 (349)
T PRK07908 93 R--LRPR-RAAVVHPSFTEPEAALRAAGIPVHRVVLDP--PFRLDPAAVP----DDA-DLVVIGNPT-NPTSVLHPAEQL 161 (349)
T ss_pred h--cCCC-eEEEeCCCChHHHHHHHHcCCEEEeeccCc--ccCcChhHhc----cCC-CEEEEcCCC-CCCCCCcCHHHH
Confidence 7 5674 577789999999999999999999999974 3778888553 344 589999998 999999997765
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.+ +|+ ++.++|+||+|+++.+ +... + +...+ . +++++++||||+||+||+|+||++++++ ++
T Consensus 162 ~~---l~~-~~~~iIvDe~y~~~~~-~~~~---~----l~~~~-~----~~~i~i~S~SK~~~l~GlRiG~~~~~~~-~~ 223 (349)
T PRK07908 162 LA---LRR-PGRILVVDEAFADAVP-GEPE---S----LAGDD-L----PGVLVLRSLTKTWSLAGLRVGYALGAPD-VL 223 (349)
T ss_pred HH---HHh-cCCEEEEECcchhhcc-CCcc---c----ccccc-C----CCEEEEeecccccCCccceeeeeecCHH-HH
Confidence 54 455 4778888999987643 3221 1 11111 1 4799999999999999999999999887 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.+....+..+.+.|.++..++. .. ..++++++++.|++||+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~a~~~~~~--~~----~~~~~~~~~~~~~~~r~~l~ 270 (349)
T PRK07908 224 ARLTRGRAHWPVGTLQLEAIAACCA--PR----AVAEAAADAARLAADRAEMV 270 (349)
T ss_pred HHHHhcCCCCCccHHHHHHHHHHhc--cc----chHHHHHHHHHHHHHHHHHH
Confidence 9998877666777888887777773 21 13677888999999998875
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=265.19 Aligned_cols=245 Identities=20% Similarity=0.228 Sum_probs=197.2
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
.++++.++|+.|.|++++| ..+.....+..|....+ +++|+++++++ |++ ++ +|++|+|+++++..+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~y~~~~~-~~lr~~la~~~----~~~--~~-~i~~t~G~~~~i~~~~~~ 83 (330)
T TIGR01140 14 IPPEDWLDFSTGINPLGPP--VPPIPASAWARYPDPEY-DELRAAAAAYY----GLP--AA-SVLPVNGAQEAIYLLPRL 83 (330)
T ss_pred CChhheeEccccCCCCCCC--hhhcchHHHhhCCCccH-HHHHHHHHHHh----CCC--hh-hEEECCCHHHHHHHHHHH
Confidence 4577899999999988766 33333444555655554 78888877764 554 44 899999999999997655
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
+.+| .|++++|+|..|...++..|.+++.++ |++.+++.+. ++ +++++++|+ ||||.+++.+++++
T Consensus 84 -l~~g-~vl~~~p~y~~~~~~~~~~g~~~~~~~---------d~~~l~~~~~-~~-~~v~i~~p~-NPtG~~~~~~~~~~ 149 (330)
T TIGR01140 84 -LAPG-RVLVLAPTYSEYARAWRAAGHEVVELP---------DLDRLPAALE-EL-DVLVLCNPN-NPTGRLIPPETLLA 149 (330)
T ss_pred -hCCC-eEEEeCCCcHHHHHHHHHcCCEEEEeC---------CHHHHHhhcc-cC-CEEEEeCCC-CCCCCCCCHHHHHH
Confidence 5778 699999999999999999999999987 5788888874 44 489999998 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|+++|+++|++||+||+|.++.++. . .....+. .+++|+++||||+||+||+|+||++++++ ++++
T Consensus 150 l~~~a~~~~~~ii~De~y~~~~~~~-~--------~~~~~~~----~~~~i~~~S~SK~~g~~G~R~G~i~~~~~-~~~~ 215 (330)
T TIGR01140 150 LAARLRARGGWLVVDEAFIDFTPDA-S--------LAPQAAR----FPGLVVLRSLTKFFGLAGLRLGFVVAHPA-LLAR 215 (330)
T ss_pred HHHHhHhcCCEEEEECcccccCCcc-c--------hhhHhcc----CCCEEEEEecchhhcCchhhhhheeCCHH-HHHH
Confidence 9999999999999999998766531 1 1111121 15899999999999999999999999987 9999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.......++++++|.++..++. +. ++.+..++.++++++.+.
T Consensus 216 l~~~~~~~~~s~~~q~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 258 (330)
T TIGR01140 216 LREALGPWTVNGPARAAGRAALA--DT------AWQAATRARLAAERARLA 258 (330)
T ss_pred HHhcCCCCCchHHHHHHHHHHHh--ch------HHHHHHHHHHHHHHHHHH
Confidence 99887777788999999999994 32 455667788888888765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-24 Score=220.60 Aligned_cols=253 Identities=15% Similarity=0.216 Sum_probs=199.3
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQN-MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~-~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
+-|++++.++..+++..|+|+-++. .|. +..-...++.++ +. ..+..+| +|+++.|+.+.++.+++
T Consensus 38 a~G~~iv~ld~~e~~ryPdP~q~ef------k~~~~d~rnk~ls~a~----~~--dkpLt~d-nic~GvGsDE~ID~iiR 104 (375)
T KOG0633|consen 38 ALGRDIVKLDANENPRYPDPEQMEF------KYVYPDPRNKRLSDAL----AQ--DKPLTSD-NICVGVGSDELIDLIIR 104 (375)
T ss_pred hcCCCceEeccccCCCCcCHHHccc------ccccCCcccchhhhhc----cc--CCCCCcc-ceEEecCcHHHHHHHHh
Confidence 4677899999988876666654221 111 111122333333 22 2345555 99999999999999999
Q ss_pred HhccCC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHH
Q 043334 691 CCILEG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-KKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 691 ~l~~pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+.|.|| +.|++..|+|..|.-.+...+++++.+|+.+ +|+++.+++.+.+... ..+++++++|+ ||||..++.++
T Consensus 105 ~~c~PGkeKIl~cPPtysMY~v~A~iNd~eVvkvpl~p--dF~lnvdai~evl~~ds~iK~~F~tSPg-NPtg~~ik~~d 181 (375)
T KOG0633|consen 105 CVCDPGKEKILDCPPTYSMYVVDAAINDAEVVKVPLNP--DFSLNVDAIAEVLELDSKIKCIFLTSPG-NPTGSIIKEDD 181 (375)
T ss_pred heecCCccceeecCCcceeEEEEeecCCceEEEecCCC--CccccHHHHHHHHhccccceEEEEcCCC-CCCcccccHHH
Confidence 999999 8999999999999999999999999999976 7999999999988754 45699999999 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+.+|++.-. |.+|++||+| +.|.+.. +.+.....++ +.+++.+|||+||++|+|+||-..+.+ +
T Consensus 182 i~KiLe~p~--nglVVvDEAY--idFsg~~-------S~~~lV~kYp----NLivlqTlSKsfGLAGiRvG~~~~~~~-i 245 (375)
T KOG0633|consen 182 ILKILEMPD--NGLVVVDEAY--IDFSGVE-------SRMKLVKKYP----NLIVLQTLSKSFGLAGIRVGYGAFPLS-I 245 (375)
T ss_pred HHHHHhCCC--CcEEEEeeee--Eeecccc-------ccchHhHhCC----ceeehhhhhhhcCcceeEeecccccHH-H
Confidence 999998653 7889999999 7777743 1233445664 799999999999999999999999988 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++-+.+.+...+.|.+...+|.++++..++ +.++..|+.+.+.|.+++
T Consensus 246 a~iln~~KaPYNiS~~~s~~AL~Als~~n~------kkme~~rdaiv~er~RL~ 293 (375)
T KOG0633|consen 246 AEILNRAKAPYNISVAGSVAALAALSDSNG------KKMEDVRDAIVRERERLF 293 (375)
T ss_pred HHHHHhccCCccccchhHHHHHHhcCcccc------hHHHHHHHHHHHHHHHHH
Confidence 999999999889999999999999964444 456666666555555443
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=229.24 Aligned_cols=265 Identities=20% Similarity=0.305 Sum_probs=210.1
Q ss_pred EEccCCCCCCCCcHHHHHHHHHH-H----HccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFES-F----ARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~a-l----~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
|||+.|.+++.+++.+...+.+. . ..|.+..|..++++.+++++...+|.+..++ ++++++|+++++..++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~~~t~a~~~~~~~~ 79 (350)
T cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE-EIVVTNGAQEALSLLLRAL 79 (350)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcc-eEEEecCcHHHHHHHHHHh
Confidence 57899999988877777666541 1 1245677899999999999998887655544 8999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 693 ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
.++||+|+++.|+|.++...++..|.+++.++++..+.+..+.+.++....++. +++++++|+ ||||.+++.+++.+|
T Consensus 80 ~~~g~~vl~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~v~i~~~~-~~tG~~~~~~~l~~l 157 (350)
T cd00609 80 LNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKT-KLLYLNNPN-NPTGAVLSEEELEEL 157 (350)
T ss_pred CCCCCEEEEcCCCchhHHHHHHHCCCEEEEEecccccCCccCHHHHHhhcCccc-eEEEEECCC-CCCCcccCHHHHHHH
Confidence 999999999999999999999999999999999765443333366666665555 589999997 999999999999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
+++|+++|+++|+|++|+.+.+.+.... ....... .+.+++++|+||.++.+|.|+||+++++.++.+.+
T Consensus 158 ~~~~~~~~~~~ivD~a~~~~~~~~~~~~------~~~~~~~----~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~ 227 (350)
T cd00609 158 AELAKKHGILIISDEAYAELVYDGEPPP------ALALLDA----YERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERL 227 (350)
T ss_pred HHHHHhCCeEEEEecchhhceeCCcccc------cccCcCc----cCcEEEEeecccccCCcccceEEEecCHHHHHHHH
Confidence 9999999999999999988777655421 0111111 24789999999999989999999999984488888
Q ss_pred HhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 853 SSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 853 ~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
..... ..+++...|.++..+|. .. .++..++++.++++++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 272 (350)
T cd00609 228 KKLLPYTTSGPSTLSQAAAAAALD--DG-----EEHLEELRERYRRRRDALL 272 (350)
T ss_pred HHHHHhcccCCChHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 87655 47888999999998884 22 1455666666666666553
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=238.89 Aligned_cols=259 Identities=14% Similarity=0.109 Sum_probs=195.5
Q ss_pred hhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC--CCCCcH---HHHHHHHHHHH----ccCCCCCchHHHHHHHHH
Q 043334 590 EMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS--FLPIPS---LVKAAIFESFA----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 590 ~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p--~~~~p~---~v~~al~~al~----~y~~~~G~~~lr~ala~~ 660 (903)
|+..++++.+..+..... .++..+.++|+|++|+| |+.+|. .+.+++.+++. .|....|.++++++++++
T Consensus 12 r~~~v~~~~~~~~~~~~~-~l~~~g~~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~g~~~Y~~~~g~~~Lreaia~~ 90 (460)
T PRK13238 12 RIKMVEPIRLTTREERER-ALAEAGYNPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMRGDEAYAGSRSYYRLEDAVKDI 90 (460)
T ss_pred eeceeccccccCHHHHHH-HHHHcCCCEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 444555555544443211 12457889999999999 677765 57777777663 366778999999999888
Q ss_pred HHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC------CCcc--
Q 043334 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE------VGFK-- 732 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~------~~f~-- 732 (903)
+.. . ++++|+|+++++..++.++++||| |++++|.|..|...+...|++++.+++++. ++|.
T Consensus 91 ~~~------~---~vv~t~ggt~A~~~~~~all~pGD-Vii~~p~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~ 160 (460)
T PRK13238 91 FGY------P---YTIPTHQGRAAEQILFPVLIKKGD-VVPSNYHFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGN 160 (460)
T ss_pred hCC------C---cEEECCCHHHHHHHHHHHhCCCCC-EEccCCcccchHHHHHHcCCEEEEEeccccccccccccccCC
Confidence 742 2 699999999999999999999999 999999999999999999999999999642 3565
Q ss_pred cCHHHHHHHhhcC---CCcEEEEECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCC--CCCccCCC---CCCCCc
Q 043334 733 MTEKTLVTILETV---KKPWVYISGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAF--SGLEFNYE---GWGGWD 803 (903)
Q Consensus 733 ld~~~L~~~l~~~---~~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY--~~l~f~~~---~~s~~s 803 (903)
+|++.|++.++++ ..++|++++|+ |||| .++|.+++++|.++|++||++||+|+++ ....|... .....+
T Consensus 161 id~e~Le~~i~~~~~~~tk~Ivl~~p~-NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~s 239 (460)
T PRK13238 161 FDLEKLEALIEEVGAENVPFIVMTITN-NSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKS 239 (460)
T ss_pred cCHHHHHHHHhhcCCCceeEEEEecCC-CCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCC
Confidence 9999999999852 23599999998 9998 9999999999999999999999999966 33445321 111111
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhcccccceee------EEEeCcHHHHHHHHhCC----C---CCCCcHHHHHHHH
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG------FLVLNHPQLVDAFSSFP----G---LSKPHSTVRYAIK 870 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG------~lv~~~~~li~~l~~~~----~---~~~~s~~~Q~aa~ 870 (903)
+ . +-++.++|++|++.++|||+| |++++++++++.++... + +.+.+...|.|++
T Consensus 240 i----~---------~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala 306 (460)
T PRK13238 240 I----K---------EIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALA 306 (460)
T ss_pred H----H---------HHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHH
Confidence 1 1 123456899999999999974 55666556888887763 2 3334555588888
Q ss_pred HHH
Q 043334 871 KLL 873 (903)
Q Consensus 871 ~~L 873 (903)
..|
T Consensus 307 ~~l 309 (460)
T PRK13238 307 VGL 309 (460)
T ss_pred hhH
Confidence 777
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-21 Score=216.55 Aligned_cols=256 Identities=13% Similarity=0.113 Sum_probs=182.5
Q ss_pred CCCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..|.++|+|+.|+ +++++++.+.+++.+.+..+.. ..|.+++++++++++++.+|.+ + +|++|+| ++
T Consensus 39 ~~g~~~i~l~~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~---~-~i~~tsG-~~ 113 (397)
T PRK06939 39 ADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTE---D-AILYSSC-FD 113 (397)
T ss_pred cCCCeEEEeeccCccccCCCHHHHHHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCC---c-EEEEcCh-HH
Confidence 3678899999998 6788899999999888865321 2578899999999999998854 2 7999999 56
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc----CCCcEEEEECCCCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET----VKKPWVYISGPTINP 759 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~----~~~~~vil~~P~~NP 759 (903)
++..++.++++|||.|++++|+|+.+...++..|++++.++. .|++.+++.+++ +++..++++.+.+||
T Consensus 114 a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~ 186 (397)
T PRK06939 114 ANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEAKEAGARHKLIATDGVFSM 186 (397)
T ss_pred HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhccCCCCeEEEEecCcCC
Confidence 777788899999999999999999999999999999988865 367888877753 112233333333599
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||... ++++|.++|+++|++||+||+|+...+.....+ ......-. .+.+++++||||.++ |+|+|
T Consensus 187 ~G~~~---~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~------~~~~~~~~---~~~~i~~~S~sK~~~--g~r~G 252 (397)
T PRK06939 187 DGDIA---PLPEICDLADKYDALVMVDDSHAVGFVGENGRG------TVEHFGVM---DRVDIITGTLGKALG--GASGG 252 (397)
T ss_pred CCCcC---CHHHHHHHHHHhCCEEEEECcccccCcCCCCCC------HHHHcCCC---CCCcEEEEECHHHhC--ccCce
Confidence 99864 489999999999999999999963222221110 01111111 135799999999984 67999
Q ss_pred EEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|++++++ +++.+..... ....+...+.++..+++.. ....++++.+++|++.+.
T Consensus 253 ~v~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--------~~~~~~~~~~~~~~~~l~ 310 (397)
T PRK06939 253 YTAGRKE-VIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--------EESDELRDRLWENARYFR 310 (397)
T ss_pred EEEeCHH-HHHHHHHhCccccccCCCCHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHH
Confidence 9999987 8898876432 1222344455555555310 112355666777766654
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=212.11 Aligned_cols=255 Identities=13% Similarity=0.125 Sum_probs=184.4
Q ss_pred CCCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..|.++|||+.|+| .++.++.+.+++.+.+..|.. ..|..+....+++.+++++|.+ + .|++++|+.+
T Consensus 13 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~---~-~i~~~~G~~~ 88 (360)
T TIGR00858 13 RDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTE---A-ALLFSSGYLA 88 (360)
T ss_pred ECCceEEecccCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCC---C-EEEECchHHH
Confidence 46788999999964 234668899999998876432 2455677777888888877742 3 7999999777
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCc
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV---KKPWVYISGPTINPT 760 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPT 760 (903)
.+. ++.+++++||.|++++|+|+.+...++..|++++.++. +|++.+++.++.. ...++++.+++ |||
T Consensus 89 ~~~-~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~~~~~~~~~~~~v~~~~~~-~~~ 159 (360)
T TIGR00858 89 NVG-VISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRH-------NDVEHLERLLEKNRGERRKLIVTDGVF-SMD 159 (360)
T ss_pred HHH-HHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecC-------CCHHHHHHHHHHcccCCCeEEEEeCCc-cCC
Confidence 665 56788899999999999999999999999999988764 5788898888653 23577777776 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|...+ +++|.++|+++|++||+||+|....++....+ ... ...+.. .+++|+++||||+|+++| ||
T Consensus 160 G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~---~~~-~~~~~~----~~~~i~i~s~sK~~~~~g---G~ 225 (360)
T TIGR00858 160 GDIAP---LPQLVALAERYGAWLMVDDAHGTGVLGEDGRG---TLE-HFGLKP----EPVDIQVGTLSKALGSYG---AY 225 (360)
T ss_pred CCCcC---HHHHHHHHHHcCcEEEEECcccccCcCCCCCc---hHH-hcCCCc----cCCcEEEEechhhhhccC---cE
Confidence 98877 78899999999999999999986666543211 111 111111 257999999999999877 99
Q ss_pred EEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++++ +++.+..... ..+.+...+.++..+++. - .....+++.++++++.+.
T Consensus 226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~------~~~~~~~~~~~~~~~~l~ 282 (360)
T TIGR00858 226 VAGSQA-LIDYLINRARTLIFSTALPPAVAAAALAALEL--I------QEEPWRREKLLALIARLR 282 (360)
T ss_pred EEcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHH--H------hhCHHHHHHHHHHHHHHH
Confidence 999877 8888865432 223444445555666631 1 122345566666666554
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-21 Score=205.77 Aligned_cols=295 Identities=13% Similarity=0.099 Sum_probs=212.3
Q ss_pred cCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC--C---CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHH
Q 043334 593 GFSRSAISVLNSAELSITETPNSGLIHMDVDQS--F---LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 593 ~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p--~---~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~ 662 (903)
..+..++..+.++-. ..+.++.|||++|.- . .|.-+.|.++-...+.+ |-+..|.+.+++++++.+
T Consensus 7 ~~p~DpIlgL~e~f~---~D~R~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~~~k~Yl~i~G~~~f~~~~~~ll- 82 (396)
T COG1448 7 AAPADPILGLKEAFK---ADPRPNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQEKTKNYLPIEGLPEFLEAVQKLL- 82 (396)
T ss_pred cCCCCchhHHHHHHh---cCCCcCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhccccccccCCcCCcHHHHHHHHHHh-
Confidence 345556777776543 267788999999952 2 22334455544443332 556789999999999887
Q ss_pred hhcCCC---CCCCCcE--EecCchHHHHHHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCH
Q 043334 663 SNFGFP---IDINAEF--IYADCSQSLFNKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTE 735 (903)
Q Consensus 663 ~~~G~~---~~pe~~I--~vt~Gs~~al~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~ 735 (903)
+|.+ ...+ +| +-|.|++++|......+. .|..+|.+++|+|+++..++...|.++..+|..+..+-.+|.
T Consensus 83 --FG~d~~~l~~~-Rv~t~Qt~GGTGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df 159 (396)
T COG1448 83 --FGADSPALAED-RVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDF 159 (396)
T ss_pred --cCCCcHHHHhh-hHhheecCCcchHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccH
Confidence 6643 1211 33 557899999998776653 355679999999999999999999999999987655555899
Q ss_pred HHHHHHhhcCCCcEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC
Q 043334 736 KTLVTILETVKKPWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS 814 (903)
Q Consensus 736 ~~L~~~l~~~~~~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~ 814 (903)
+.+.+.++.-...-|++-+++ |||||.-++.++|++|+++.++.+.+.+.|-+|.++.-+-+. ..+.++-++. ..
T Consensus 160 ~~mla~L~~a~~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~Glee-Da~~lR~~a~---~~ 235 (396)
T COG1448 160 DGMLADLKTAPEGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEE-DAYALRLFAE---VG 235 (396)
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHH-HHHHHHHHHH---hC
Confidence 998888876543445555555 999999999999999999999999999999999766543221 1122222222 21
Q ss_pred CCCCCceEEEccCchhcccccceeeE--EEeCcHHHHHHHHh----CC--CCCCCcHHHHHHHHHHHhcccccchhHHHH
Q 043334 815 TNSSFNVSLLGGLSLKMLTGALKFGF--LVLNHPQLVDAFSS----FP--GLSKPHSTVRYAIKKLLGLRERKARDLMNA 886 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~GlRiG~--lv~~~~~li~~l~~----~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~ 886 (903)
..+++..||||+||+.|-|+|. +++.+.+..+.+.. +. .+++|+...-..+...|. +......|++.
T Consensus 236 ----~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~-~p~Lra~W~~E 310 (396)
T COG1448 236 ----PELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILN-NPELRAEWEQE 310 (396)
T ss_pred ----CcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhC-CHHHHHHHHHH
Confidence 2489999999999999999995 44555544444432 22 288899999999999994 22223457788
Q ss_pred HHHHHHHHHHHHHHHhC
Q 043334 887 VAEHIRNLESRSKRLKE 903 (903)
Q Consensus 887 l~~~r~~y~~Rr~~l~e 903 (903)
+..+|.++.++|+.|++
T Consensus 311 l~~Mr~Ri~~mR~~lv~ 327 (396)
T COG1448 311 LEEMRQRILEMRQALVD 327 (396)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-21 Score=211.95 Aligned_cols=181 Identities=29% Similarity=0.390 Sum_probs=144.1
Q ss_pred CcccCCcccCcchhHHHHHHhh-cCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 1 MMVIPSIFIPEDWSFTFYEGLN-RHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~L~-~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
+.|.++|++||+.+..+.+.+. .... .+.+|||+|||||.+++.+++..+.++|+|+|+|+++++.|++|+..+++
T Consensus 83 ~~v~~~vliPr~dTe~Lve~~l~~~~~---~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l 159 (280)
T COG2890 83 FKVDEGVLIPRPDTELLVEAALALLLQ---LDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159 (280)
T ss_pred eeeCCCceecCCchHHHHHHHHHhhhh---cCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 3689999999999988888743 1111 11179999999999999999999889999999999999999999999986
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
.++.++++|+++.... +||+||+||||++.. ......++..+.| ..++.+
T Consensus 160 ----------------~~~~~~~~dlf~~~~~---~fDlIVsNPPYip~~-~~~~~~~~~~~EP---------~~Al~~- 209 (280)
T COG2890 160 ----------------VRVLVVQSDLFEPLRG---KFDLIVSNPPYIPAE-DPELLPEVVRYEP---------LLALVG- 209 (280)
T ss_pred ----------------ccEEEEeeecccccCC---ceeEEEeCCCCCCCc-ccccChhhhccCH---------HHHHcc-
Confidence 4788888888886543 899999999999877 3333333333332 334444
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCC-CeEEEEEehh
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRG-FRVDKLWQTK 217 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~g-f~~~~~~~~~ 217 (903)
+.+|++.+++++.++.++|+|||.++++++..+.... ++++.+.| |..+....+.
T Consensus 210 --g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v-~~~~~~~~~~~~v~~~~d~ 265 (280)
T COG2890 210 --GGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAV-KALFEDTGFFEIVETLKDL 265 (280)
T ss_pred --CccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHH-HHHHHhcCCceEEEEEecC
Confidence 5699999999999999999999999999998877666 68999999 6655554443
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.1e-21 Score=217.49 Aligned_cols=218 Identities=17% Similarity=0.131 Sum_probs=174.6
Q ss_pred cCCCCCeEEccCCCC--CCCCcH---HHHHHHHHHHH----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 611 ETPNSGLIHMDVDQS--FLPIPS---LVKAAIFESFA----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p--~~~~p~---~v~~al~~al~----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
+..|.+++.|..+++ |+.++. .+.++..+++. .|..+.|.++|++++++++. . . ++++|+|+
T Consensus 7 ~~~g~n~~~l~~~~v~iDlltds~t~ams~~~~~a~~~gd~~Y~~~~g~~~Leeaia~~~g----~--~---~vv~t~~G 77 (431)
T cd00617 7 KEAGYNVFLLRSEDVYIDLLTDSGTGAMSDYQWAAMMLGDEAYAGSKSFYDLEDAVQDLFG----F--K---HIIPTHQG 77 (431)
T ss_pred HHcCCCEEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHC----C--C---eEEEcCCH
Confidence 457889999999999 766553 45444445443 37778889999999988763 3 2 79999999
Q ss_pred HHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCC------c--ccCHHHHHHHhhcC---CCcEE
Q 043334 682 QSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVG------F--KMTEKTLVTILETV---KKPWV 750 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~------f--~ld~~~L~~~l~~~---~~~~v 750 (903)
++++..++.++++|||.| +++|+|..+...+...|++++.++++++.+ | ++|+++|+++++++ ..++|
T Consensus 78 t~Al~la~~al~~pGD~V-~~~~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I 156 (431)
T cd00617 78 RGAENILFSILLKPGRTV-PSNMHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI 156 (431)
T ss_pred HHHHHHHHHHhCCCCCEE-ccCCcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence 999999999999999987 699999999999999999999999975432 4 49999999999865 13589
Q ss_pred EEECCCCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCC--CCccC-----CCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 751 YISGPTINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFS--GLEFN-----YEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 751 il~~P~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~--~l~f~-----~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++|+ ||+ |.++|.+++++|.++|++||++||+|++.. ...|. +... .+ +. +.++
T Consensus 157 ~v~~p~-N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~--~s----i~---------ei~~ 220 (431)
T cd00617 157 VLTITN-NTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRD--KS----IA---------EIAR 220 (431)
T ss_pred EEECCc-CCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccC--CC----HH---------HHHH
Confidence 999998 998 999999999999999999999999999942 22332 2111 11 11 2456
Q ss_pred EEccCchhcccccce------eeEEEeCcHHHHHHHHh
Q 043334 823 LLGGLSLKMLTGALK------FGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 823 ~l~S~SK~~g~~GlR------iG~lv~~~~~li~~l~~ 854 (903)
.++|+||.+.|+||| .||+++++++++++++.
T Consensus 221 e~~s~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~ 258 (431)
T cd00617 221 EMFSYADGCTMSAKKDGLVNIGGFLALRDDELYEEARQ 258 (431)
T ss_pred HhhccCCEEEEEeecCCCCccceEEEeCcHHHHHHHHH
Confidence 789999999999999 56999998669998875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-20 Score=210.07 Aligned_cols=253 Identities=14% Similarity=0.118 Sum_probs=181.0
Q ss_pred CCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccCC----CC---CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQNM----SE---SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~~----~~---G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+.++|+|+.|++ .+++++.+++++.+++.+++. +. |..+....+++.+++++|.+ ++++++|++++
T Consensus 36 ~g~~~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~-----~~ii~~~~~~a 110 (393)
T TIGR01822 36 DGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTE-----DTILYASCFDA 110 (393)
T ss_pred CCceEEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC-----cEEEECchHHH
Confidence 5678999999985 788899999999998876422 22 65555667777777777752 46666788899
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTIN 758 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~N 758 (903)
+..++.+++++||.|++++|+|+.+...++..+++.+.++. +|++.+++.+++ ++ ++|++.+++ |
T Consensus 111 ~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~~~~~~~~~-------~d~~~l~~~i~~~~~~~~~~-~~v~~~~v~-~ 181 (393)
T TIGR01822 111 NGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMADLEAQLKEARAAGARH-RLIATDGVF-S 181 (393)
T ss_pred HHHHHHHhCCCCCEEEEeccccHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhhhhcCCCc-eEEEEeCCc-c
Confidence 99999999999999999999999999999988888765532 688999888874 33 467777776 9
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
|||.+.+ +++|+++|+++|++||+||+|+...++....+ .....+-. .+.+++++|+||.+ +|+|+
T Consensus 182 ~tG~~~~---l~~i~~la~~~~~~li~De~~~~g~~~~~~~~------~~~~~~~~---~~~di~~~s~sK~l--~g~r~ 247 (393)
T TIGR01822 182 MDGVIAP---LDEICDLADKYDALVMVDECHATGFLGPTGRG------SHELCGVM---GRVDIITGTLGKAL--GGASG 247 (393)
T ss_pred CCCCcCC---HHHHHHHHHHcCCEEEEECCccccCcCCCCCc------hHHhcCCC---CCCeEEEEEChHHh--hCCCc
Confidence 9999987 88999999999999999999963332222110 11111111 13679999999986 48999
Q ss_pred eEEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 839 GFLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 839 G~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
||++++++ +++.+..... ....+...+.++.++|+.. +..+++++.++++++++.
T Consensus 248 G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~--------~~~~~~~~~~~~~~~~l~ 306 (393)
T TIGR01822 248 GFTTARKE-VVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--------EASNELRDRLWANTRYFR 306 (393)
T ss_pred EEEEeCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHHH
Confidence 99999877 8888876432 2223444455566666311 123345556666665553
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=204.24 Aligned_cols=257 Identities=13% Similarity=0.182 Sum_probs=200.0
Q ss_pred ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc-CCCeEEEcCCCcHHHHHHHHHcCCEEE
Q 043334 643 RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL-EGGTLCFPAGSNGNYVSAARFLKANIV 721 (903)
Q Consensus 643 ~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~-pGD~Vlv~~P~y~~~~~~~~~~G~~vv 721 (903)
.|..++|.+-.|+.+++++.++-|.+.+|+ +|++|+|++.++..++..++. +.+.|++|-|.||.|...+..+|+..+
T Consensus 108 aYS~SqGv~~vR~~VA~~I~rRDG~p~~p~-dI~LT~GAS~ai~~il~l~~~~~~~GvliPiPQYPLYsAti~l~~~~~v 186 (475)
T KOG0258|consen 108 AYSDSQGVPGVRKHVAEFIERRDGIPADPE-DIFLTTGASPAIRSILSLLIAGKKTGVLIPIPQYPLYSATISLLGGTQV 186 (475)
T ss_pred ccccccCChhHHHHHHHHHHhccCCCCCHH-HeeecCCCcHHHHHHHHHHhcCCCCceEeecCCCchhHHHHHHhCCccc
Confidence 377789999999999999999999889988 999999999999999888764 568899999999999999999999999
Q ss_pred EecCCCCCCcccCHHHHHHHhhc----CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILET----VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYE 797 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~----~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~ 797 (903)
++-++++++|.+|.++|++.+.+ -+++++++.||. ||||.++|.+-+++|+.+|.+++++++.||+|.+-+|...
T Consensus 187 ~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPG-NPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~ 265 (475)
T KOG0258|consen 187 PYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPG-NPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTG 265 (475)
T ss_pred ceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCC-CccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCC
Confidence 99999999999999999887654 245689999999 9999999999999999999999999999999999888765
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeC--cHHHHHHHHhCCC-CCCCcHHHHHHHHHHH
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLN--HPQLVDAFSSFPG-LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~--~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L 873 (903)
. .|+|....+..+......+-..+.++|.||.+ |=.|.|-||.-.- ..+..+.+.++.. ..+++...|...-...
T Consensus 266 s-kFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~V 344 (475)
T KOG0258|consen 266 S-KFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIKKLASIKLCPQVSGQKLVDLVV 344 (475)
T ss_pred c-chHhHHHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHHHHHhhhhcCCccchhhhceec
Confidence 2 23454444444442211123578899999998 4489999987642 2236666666655 6677777787666555
Q ss_pred hccccc---chhHHHHHHHHHHHHHHHHHHHh
Q 043334 874 GLRERK---ARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 874 ~~~~~~---~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.-.... .+.+....+.+...+++|.+.+.
T Consensus 345 nPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~ 376 (475)
T KOG0258|consen 345 NPPKPGDPSYDLFSSEKDGILSSLRSRAKLTE 376 (475)
T ss_pred CCCCCCCcchhhhhhhhHhHHHHHHHHhHHHH
Confidence 211111 22233445556666666666553
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-21 Score=213.01 Aligned_cols=182 Identities=20% Similarity=0.230 Sum_probs=144.4
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.|.|++|+||..+..+.+.+..... ++.+|||+|||+|.+++.+++..++.+|+|+|+|++|++.|++|+..++.
T Consensus 226 ~V~p~vLIPRpeTE~LVe~aL~~l~---~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-- 300 (423)
T PRK14966 226 AVNPNVLIPRPETEHLVEAVLARLP---ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-- 300 (423)
T ss_pred EeCCCccCCCccHHHHHHHhhhccC---CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 5789999999888877777554322 45699999999999999999888889999999999999999999987754
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
+++++++|+.+......++||+|++||||+...+...+...+ .+ ++..++.+
T Consensus 301 ---------------rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v-~~---------EP~~AL~g--- 352 (423)
T PRK14966 301 ---------------RVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDL-RF---------EPQIALTD--- 352 (423)
T ss_pred ---------------cEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhh-hc---------CHHHHhhC---
Confidence 799999999765322223799999999999766543222222 22 34445554
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+.+|++.++++++.+.++|+|||.++++++..+.... ++++++.||..+++..+.
T Consensus 353 G~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V-~~ll~~~Gf~~v~v~kDl 407 (423)
T PRK14966 353 FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAV-RGVLAENGFSGVETLPDL 407 (423)
T ss_pred CCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHH-HHHHHHCCCcEEEEEEcC
Confidence 7899999999999999999999999999988655544 778999999877775444
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=193.56 Aligned_cols=265 Identities=16% Similarity=0.179 Sum_probs=189.7
Q ss_pred CCCeEEccCCCCCCCC--cHHHHHHHHH---------HHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 614 NSGLIHMDVDQSFLPI--PSLVKAAIFE---------SFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~--p~~v~~al~~---------al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
.++.|.|+.|+|..-+ .....+...+ ++-+|..++|...+.+++++.+++.||...+++ +|.+|+|++
T Consensus 29 t~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~-NIalTnGSQ 107 (417)
T COG3977 29 TPGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQ-NIALTNGSQ 107 (417)
T ss_pred CCCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccc-eeeecCCcc
Confidence 3459999999886321 1112222222 233477789999999999999999999998866 999999999
Q ss_pred HHHHHHHHHhcc---CCC--eEEEc-CCCcHHHHHHHHHcCCEEEE---ecCCCCCC--cccCHHHHHHHhhcCCCcEEE
Q 043334 683 SLFNKLVLCCIL---EGG--TLCFP-AGSNGNYVSAARFLKANIVN---IPTESEVG--FKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 683 ~al~~ll~~l~~---pGD--~Vlv~-~P~y~~~~~~~~~~G~~vv~---v~~~~~~~--f~ld~~~L~~~l~~~~~~~vi 751 (903)
.++..++..+.. .|+ .|+.| .|.|.+|..+..--..=|.. +.+.+.+. |.+|.+++.- .+.+ .+|+
T Consensus 108 s~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i--~e~~-g~ic 184 (417)
T COG3977 108 SAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHI--GEST-GAIC 184 (417)
T ss_pred chHHHHHHHhcCccCCCcceeEeeccChhhccccccccCccceeeccCCcccccccceeeccCHHHccc--cccc-ceEE
Confidence 999998887743 243 45444 88888887654221111111 12222333 5677777753 3444 5899
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
++-|+ ||||.|++.+|+.+|-++|++||+.+|+|.+|+ .-|.+--. ....... ++|+|.+.|+|| .
T Consensus 185 ~SRPt-NPTGNVlTdeE~~kldalA~~~giPliIDnAYg-~PFP~iif---------sd~~~~w--~~NiilC~SLSK-~ 250 (417)
T COG3977 185 VSRPT-NPTGNVLTDEELAKLDALARQHGIPLIIDNAYG-VPFPGIIF---------SDATPLW--NENIILCMSLSK-L 250 (417)
T ss_pred ecCCC-CCCCCcccHHHHHHHHHHhhhcCCcEEEecccC-CCCCceec---------ccccccC--CCCEEEEeehhh-c
Confidence 99999 999999999999999999999999999999996 23332111 1111111 258999999999 7
Q ss_pred ccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
|+||.|+|.++++++ +++++.++.. +..++.+.|.++..+++ ++. -++-.-+-+|-.|+.|.+..
T Consensus 251 GLPG~R~GIiIane~-viqaitnmn~iisLap~~~G~Aia~~mie--~gd--l~rlseqVIrPFY~~~~q~~ 317 (417)
T COG3977 251 GLPGSRCGIIIANEK-VIQAITNMNGIISLAPGRMGPAIAAEMIE--SGD--LLRLSEQVIRPFYRNRVQTT 317 (417)
T ss_pred CCCCcceeEEEccHH-HHHHHHhccceeeecCCCccHHHHHHHhh--cch--HHHHHHHhhhHHHHHHHHHH
Confidence 999999999999998 9999999987 77888999999999994 441 12222345666777776654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=206.65 Aligned_cols=234 Identities=12% Similarity=0.116 Sum_probs=177.7
Q ss_pred CCCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQN-------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~-------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..|++++||+.|+ +.+++++.+.+++.+.+.++. ...|.+++++++++++++.+|.+ + .|++++|+++
T Consensus 30 ~~g~~~id~~~~~~~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~---~-~i~~~sG~~a 105 (385)
T TIGR01825 30 VNGKEVINLSSNNYLGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTE---A-ALVFQSGFNT 105 (385)
T ss_pred ECCceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCC---c-EEEECcHHHH
Confidence 4678899999987 678788899999988876542 24578899999999999988853 2 6999999665
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCc
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV---KKPWVYISGPTINPT 760 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPT 760 (903)
.+ .++.+++++||.|++++|+|+.+...++..|++++.++ .+|++.+++.+.+. +.++++++++. |||
T Consensus 106 ~~-~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~~~~v~-~~t 176 (385)
T TIGR01825 106 NQ-GVLSALLRKGDIVLSDELNHASIIDGLRLTKATKKIYK-------HADMDDLDRVLRENPSYGKKLIVTDGVF-SMD 176 (385)
T ss_pred HH-HHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHhhccCCCeEEEEecCC-cCC
Confidence 55 67788899999999999999999888888899887764 26788888776542 22466666665 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++|+||+|+.+.++....+ ....++-.+ +++++++||||.++++| ||
T Consensus 177 G~~~~---~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~------~~~~~~~~~---~~~i~~~s~sK~~~~~g---G~ 241 (385)
T TIGR01825 177 GDVAP---LPEIVELAERYGAVTYVDDAHGSGVMGEAGRG------TVHHFGLED---KVDIQVGTLSKAIGVVG---GY 241 (385)
T ss_pred CCccC---HHHHHHHHHHhCCEEEEECcccccCcCCCCCc------cHhhcCCCc---CCcEEEEeccHHhhcCC---CE
Confidence 99988 78899999999999999999977666532210 011111111 47999999999998766 99
Q ss_pred EEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
++++++ +++.+..... ....+.+.|.++.++++
T Consensus 242 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 278 (385)
T TIGR01825 242 AAGHKE-LIEYLKNRARPFLFSTAQPPAVVAALAAAVD 278 (385)
T ss_pred EecCHH-HHHHHHHhCccccccCCCCHHHHHHHHHHHH
Confidence 998877 8888876532 22345677878877774
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=204.37 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=176.1
Q ss_pred CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEc---C
Q 043334 627 LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFP---A 703 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~---~ 703 (903)
+...+.++++..+++.+|+ |..++.+.+++.+++++|.+.+ ++++++|+.+++..++.++++|||.|+++ .
T Consensus 32 l~~~~~~~~~~~~~~~~~~---g~~~~~~~Le~~lA~~~g~~~e---~ilv~~gg~~a~~~~~~al~~~gd~Vli~~~d~ 105 (346)
T TIGR03576 32 LAGGFKIDEEDLELLETYV---GPAIFEEKVQELGREHLGGPEE---KILVFNRTSSAILATILALEPPGRKVVHYLPEK 105 (346)
T ss_pred CCCChhHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCcc---eEEEECCHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3456788888888888874 7889999999999999998644 89999999999999999999999999975 5
Q ss_pred CCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 704 GSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 704 P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
|+|+.|...++..|++++.+ .+++.++. .+++ ++|++ +++ ||+|.+++.+++++|+++|+++|++|
T Consensus 106 p~~~s~~~~~~l~ga~~~~~---------~~l~~l~~--~~~~-~lIii-tg~-s~~G~v~~~~~L~~i~~la~~~~~~l 171 (346)
T TIGR03576 106 PAHPSIPRSCKLAGAEYFES---------DELSELKK--IDGT-SLVVI-TGS-TMDLKVVSEEDLKRVIKQAKSKEAIV 171 (346)
T ss_pred CCchhHHHHHHHcCCEEecc---------CCHHHHhh--CcCc-eEEEE-ECC-CCCCcccCHHHHHHHHHHHHHcCCEE
Confidence 79999999999999986432 13444432 2334 36666 566 89999999999999999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCC
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKP 861 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~ 861 (903)
|+||+|+...+..... . +.. .. + ..++++|||| +++|+|+||++++++ +++.+.+... ..+.
T Consensus 172 ivDEAy~~~~~~~~~~--~---~~~-~~-~------~divv~s~SK--alaG~r~G~v~~~~~-li~~l~~~~~~~~~s~ 235 (346)
T TIGR03576 172 LVDDASGARVRRLYGQ--P---PAL-DL-G------ADLVVTSTDK--LMDGPRGGLLAGRKE-LVDKIKSVGEQFGLEA 235 (346)
T ss_pred EEECCccccccccCCC--C---CHH-Hc-C------CcEEEeccch--hccccceEEEEeCHH-HHHHHHHhhcCcccCc
Confidence 9999998654321110 0 111 11 1 2367789999 578999999999987 9999998765 3346
Q ss_pred cHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 862 HSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 862 s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++.|.++..+|+ .. ..+.+++.+++|++++
T Consensus 236 ~~~~~~aa~~aL~--~~-------~~~~~~~~l~~r~~~~ 266 (346)
T TIGR03576 236 QAPLLAAVVRALE--EF-------ELSRIRDAFKRKEEVY 266 (346)
T ss_pred cHHHHHHHHHHHh--hc-------cHHHHHHHHHHHHHHH
Confidence 8889999999994 11 1234566777776665
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=202.21 Aligned_cols=179 Identities=22% Similarity=0.290 Sum_probs=139.4
Q ss_pred cccCCcccCcchhHHHHHH-hhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 2 MVIPSIFIPEDWSFTFYEG-LNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~-L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
.|.|+||+|+..+..+++. +..... ..++.+|||+|||+|.+++.+++..++.+|+|+|+|+.+++.|++|+..+++
T Consensus 93 ~v~~~vlipr~~te~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~- 170 (284)
T TIGR03533 93 YVDERVLIPRSPIAELIEDGFAPWLE-PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL- 170 (284)
T ss_pred EECCCCccCCCchHHHHHHHHHHHhc-cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 5889999999766555444 221111 1135689999999999999999998889999999999999999999998886
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
.++++++++|+.+.... .+||+|++||||+.......+..++. + .+..++.+
T Consensus 171 --------------~~~i~~~~~D~~~~~~~--~~fD~Iv~NPPy~~~~~~~~l~~~~~-~---------ep~~al~g-- 222 (284)
T TIGR03533 171 --------------EDRVTLIQSDLFAALPG--RKYDLIVSNPPYVDAEDMADLPAEYH-H---------EPELALAS-- 222 (284)
T ss_pred --------------CCcEEEEECchhhccCC--CCccEEEECCCCCCccchhhCCHhhh-c---------CHHHHhcC--
Confidence 25799999999775432 37999999999997766544444332 2 23334544
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.+|++.++++++++.++|+|||+++++++... ..+++++.+.||.....
T Consensus 223 -g~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 223 -GEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVPFTWLEF 272 (284)
T ss_pred -CCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCCCceeee
Confidence 789999999999999999999999999998743 56678899888876443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-20 Score=203.31 Aligned_cols=183 Identities=22% Similarity=0.302 Sum_probs=140.9
Q ss_pred cccCCcccCcchhHHHHHHhh-cCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLN-RHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~-~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
.|.|+||+||..+..+.+... .... ..++.+|||+|||+|.+++.++..+++.+|+|+|+|+++++.|++|+..+++
T Consensus 86 ~v~~~vliPr~ete~lv~~~l~~~~~-~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~- 163 (284)
T TIGR00536 86 FVNEHVLIPRPETEELVEKALASLIS-QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL- 163 (284)
T ss_pred EECCCCcCCCCccHHHHHHHHHHhhh-cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 588999999966665555532 2211 1123689999999999999999998888999999999999999999988876
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
..+++++++|+.+..... +||+|++||||+...+...+ ..+..+ ++..++.+
T Consensus 164 --------------~~~v~~~~~d~~~~~~~~--~fDlIvsNPPyi~~~~~~~~-~~~~~~---------eP~~AL~g-- 215 (284)
T TIGR00536 164 --------------EHRVEFIQSNLFEPLAGQ--KIDIIVSNPPYIDEEDLADL-PNVVRF---------EPLLALVG-- 215 (284)
T ss_pred --------------CCcEEEEECchhccCcCC--CccEEEECCCCCCcchhhcC-Cccccc---------CcHHHhcC--
Confidence 246999999998764332 79999999999977654333 222222 34455655
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHH-HCCCeEEEEEeh
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFE-RRGFRVDKLWQT 216 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~-~~gf~~~~~~~~ 216 (903)
+.+|++.++++++++.++|+|||.++++++..+.... .+++. ..||..+...++
T Consensus 216 -g~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~-~~~~~~~~~~~~~~~~~D 270 (284)
T TIGR00536 216 -GDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSL-KELLRIKFTWYDVENGRD 270 (284)
T ss_pred -CCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHH-HHHHHhcCCCceeEEecC
Confidence 7899999999999999999999999999998766555 56776 468877666444
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-19 Score=201.58 Aligned_cols=235 Identities=13% Similarity=0.150 Sum_probs=172.0
Q ss_pred CCCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..|.+.|||+.|++ .+.+++.+.+++.+.+..|.. ..|..++++.+++.+++++|. ++ .|++++|+.+
T Consensus 36 ~~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~---~~-~i~~~~g~~~ 111 (385)
T PRK05958 36 VDGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGA---ER-ALLFSSGYAA 111 (385)
T ss_pred eCCceEEEeeCCCcccCCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---Cc-EEEECcHHHH
Confidence 47889999999875 345678899999998876532 245677888899999998873 22 6777776655
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC--CCcEEEEECCCCCCcc
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV--KKPWVYISGPTINPTG 761 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~--~~~~vil~~P~~NPTG 761 (903)
.+ .++..++++||.|++++|+|+.+...++..|++++.++. .|++.+++.+++. ++.++++.+++ ||||
T Consensus 112 ~~-~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~~~~-~~~G 182 (385)
T PRK05958 112 NL-AVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPH-------NDVDALEALLAKWRAGRALIVTESVF-SMDG 182 (385)
T ss_pred HH-HHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCceEEeCC-------CCHHHHHHHHHhccCCCeEEEEEecc-cCCC
Confidence 54 567788999999999999999999999999999998875 3688898888753 33355555565 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
...+ +++|.++|+++|++||+||+|+...++...... .. ...+... .++|+++||||.+|++| ||+
T Consensus 183 ~~~~---l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~---~~-~~~~~~~----~~~i~~~s~sK~~~~~G---g~~ 248 (385)
T PRK05958 183 DLAP---LAELVALARRHGAWLLVDEAHGTGVLGPQGRGL---AA-EAGLAGE----PDVILVGTLGKALGSSG---AAV 248 (385)
T ss_pred CcCC---HHHHHHHHHHhCCEEEEECcccccccCCCCCch---HH-hhCCCCC----CceEEEEechhhcccCC---cEE
Confidence 8876 888999999999999999999765554322110 01 1112222 47899999999998877 999
Q ss_pred EeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 842 VLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 842 v~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
+++++ +++.+.+... ..+.+...+.++..+|+
T Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~ 284 (385)
T PRK05958 249 LGSET-LIDYLINRARPFIFTTALPPAQAAAARAALR 284 (385)
T ss_pred EcCHH-HHHHHHHhCccceecCCCCHHHHHHHHHHHH
Confidence 98876 8887764432 22344444455556663
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=217.36 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=145.7
Q ss_pred CcccCCcccCcchhHHHHHHhh-cCCC--------------------C--CCCCCeEEEeCCccCHHHHHHHHHhCCCEE
Q 043334 1 MMVIPSIFIPEDWSFTFYEGLN-RHPD--------------------S--ILKDKTVAELGCGNGWITIAIAEKWLPSKV 57 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~L~-~~~~--------------------~--~~~~~~VLDlGCGtG~lsi~la~~~~~~~V 57 (903)
+.|.|+|+|||..+..+.+... .+.. . ..++.+|||+|||+|.+++.++...++.+|
T Consensus 86 f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v 165 (506)
T PRK01544 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANV 165 (506)
T ss_pred EEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeE
Confidence 4689999999976666655432 2110 0 113468999999999999999998888999
Q ss_pred EEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhH
Q 043334 58 YGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKI 137 (903)
Q Consensus 58 ~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~ 137 (903)
+|+|+|+.+++.|++|+..+++ .++++++++|+.+.... ++||+|++||||+.......+..+
T Consensus 166 ~avDis~~al~~A~~N~~~~~l---------------~~~v~~~~~D~~~~~~~--~~fDlIvsNPPYi~~~~~~~l~~~ 228 (506)
T PRK01544 166 IATDISLDAIEVAKSNAIKYEV---------------TDRIQIIHSNWFENIEK--QKFDFIVSNPPYISHSEKSEMAIE 228 (506)
T ss_pred EEEECCHHHHHHHHHHHHHcCC---------------ccceeeeecchhhhCcC--CCccEEEECCCCCCchhhhhcCch
Confidence 9999999999999999988876 25799999998775432 379999999999987665444444
Q ss_pred HhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 138 ITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 138 ~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+..+ .+..++++ +.+|++.++++++++.++|+|||.++++++..+.... .+++.+.||..+.++.+.
T Consensus 229 v~~~---------EP~~AL~g---g~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v-~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 229 TINY---------EPSIALFA---EEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAV-TQIFLDHGYNIESVYKDL 295 (506)
T ss_pred hhcc---------CcHHHhcC---CccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHH-HHHHHhcCCCceEEEecC
Confidence 4433 23345554 7899999999999999999999999999987765544 678888999877775444
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.7e-20 Score=195.85 Aligned_cols=181 Identities=20% Similarity=0.260 Sum_probs=140.3
Q ss_pred CcccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
+.+.|++|+|+..+..+.+...........+.+|||+|||+|.+++.+++..++.+|+|+|+|+.|++.|++|+..++
T Consensus 57 ~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-- 134 (251)
T TIGR03704 57 IAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-- 134 (251)
T ss_pred EEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--
Confidence 357899999997777666664332211123458999999999999999998888899999999999999999997653
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
++++++|+.+.... ..++||+|++||||+.......+..++..+. +..++.+
T Consensus 135 -----------------~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~e---------p~~al~g- 187 (251)
T TIGR03704 135 -----------------GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHE---------PRVALDG- 187 (251)
T ss_pred -----------------CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCC---------CHHHhcC-
Confidence 36789998775432 1237999999999998766655555554332 3335544
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.+|++.++++++.+.++|+|||.++++++..+... +..++++.||.....
T Consensus 188 --g~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~-v~~~l~~~g~~~~~~ 238 (251)
T TIGR03704 188 --GADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPL-AVEAFARAGLIARVA 238 (251)
T ss_pred --CCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHH-HHHHHHHCCCCceee
Confidence 788999999999999999999999999999876654 467889999887655
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=207.68 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=160.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH-----HHcCCEEEEec
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA-----RFLKANIVNIP 724 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~-----~~~G~~vv~v~ 724 (903)
..+..+++++.++..+|.+ .+++++|+++++..++.+++++||+|+++.|.|+.+...+ +..|++++.++
T Consensus 74 ~~Pt~~~LE~~lA~l~g~~-----~~l~~~sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~~~~~~d 148 (418)
T PLN02242 74 FNPTVLNLGRQMAALEGTE-----AAYCTASGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNITTTFVD 148 (418)
T ss_pred CChhHHHHHHHHHHHhCCC-----eEEEEccHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCceEEEcC
Confidence 3455778888898888764 4667888899999999999999999999999999887665 35788888776
Q ss_pred CCCCCCcccCHHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCc
Q 043334 725 TESEVGFKMTEKTLVTILETV-KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWD 803 (903)
Q Consensus 725 ~~~~~~f~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s 803 (903)
. .|++.++++++++ + ++|++++|+ ||||.+++ +++|+++|+++|++||+|++|..+.++..
T Consensus 149 ~-------~d~e~l~~~i~~~~t-klV~lesp~-NPtG~v~d---l~~I~~la~~~gi~livDea~~~~~~~~~------ 210 (418)
T PLN02242 149 I-------TDLEAVKKAVVPGKT-KVLYFESIS-NPTLTVAD---IPELARIAHEKGVTVVVDNTFAPMVLSPA------ 210 (418)
T ss_pred C-------CCHHHHHHhcCcCCC-EEEEEecCC-CCCCcccC---HHHHHHHHHHhCCEEEEECCCCccCCCHH------
Confidence 5 2789999999874 5 599999998 99999986 88999999999999999999976544211
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccc
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRER 878 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~ 878 (903)
. + +..|+++||||.++++|+|+ ||++++++ +++.+.+... ..+.+...|.++..++.+.
T Consensus 211 -----~-~-------g~divv~S~SK~l~g~g~~~gG~iv~~~~-li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~-- 274 (418)
T PLN02242 211 -----R-L-------GADVVVHSISKFISGGADIIAGAVCGPAE-LVNSMMDLHHGALMLLGPTMNPKVAFELSERLP-- 274 (418)
T ss_pred -----H-c-------CCcEEEEeCccccCCCCCceEEEEEcCHH-HHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC--
Confidence 1 1 25689999999999999985 89998877 8888886632 4566677788887776321
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 043334 879 KARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 879 ~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+....+.+++|++.+.
T Consensus 275 -------tl~~r~~~~~~~a~~la 291 (418)
T PLN02242 275 -------HLSLRMKEHCRRAMEYA 291 (418)
T ss_pred -------cHHHHHHHHHHHHHHHH
Confidence 22334445666665553
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=205.80 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=189.0
Q ss_pred CCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.|.+.+||+.++ +.+..++.+++++.+++.+|+. .+|..+....+++.+++++|.+ + .|++++|.++
T Consensus 107 ~G~~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~---~-~i~~s~G~~a- 181 (481)
T PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTP---D-SILYSYGLST- 181 (481)
T ss_pred CCceEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCC---C-EEEECCHHHH-
Confidence 567899999875 4677899999999999988643 2455666777888888877753 3 6999999885
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEECCCCCCccc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~P~~NPTG~ 762 (903)
+..++.+++++||.|++....|..+...+...|.+++.++.++.++|..+++++++... ++++++|++..+. ||||.
T Consensus 182 ~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~-~~~G~ 260 (481)
T PLN02822 182 IFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIY-QNSGQ 260 (481)
T ss_pred HHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCC-CCCCC
Confidence 56688899999999999988888888889999999999987643344444444433321 2233588888887 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+.+ +++|.++|++||+++|+||+|+...++..... ....++-.. .+..|+++||||++|++| ||++
T Consensus 261 i~~---L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G------~~e~~~v~~--~~~dii~~s~sKalg~~G---G~i~ 326 (481)
T PLN02822 261 IAP---LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG------LSEHFGVPI--EKIDIITAAMGHALATEG---GFCT 326 (481)
T ss_pred ccC---HHHHHHHHHHcCCEEEEECCccccccCCCCCC------hHHHcCCCC--CCCeEEEecchhhhhhCC---eEEE
Confidence 999 89999999999999999999987777643321 111111100 136799999999999999 9999
Q ss_pred eCcHHHHHHHHhCCC--CCC--CcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 843 LNHPQLVDAFSSFPG--LSK--PHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 843 ~~~~~li~~l~~~~~--~~~--~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++ +++.++.... ..+ .++..|.++.++|+.. +. ..++++.+++|++++.
T Consensus 327 g~~~-ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l-------~~-~~~~~~~l~~~~~~l~ 381 (481)
T PLN02822 327 GSAR-VVDHQRLSSSGYVFSASLPPYLASAAITAIDVL-------ED-NPSVLAKLKENIALLH 381 (481)
T ss_pred cCHH-HHHHHHhcCCceeeccccCHHHHHHHHHHHHHH-------Hh-CHHHHHHHHHHHHHHH
Confidence 9887 9988875443 222 3466788888888411 11 1345556666666553
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=207.01 Aligned_cols=188 Identities=13% Similarity=0.133 Sum_probs=146.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEV 729 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~ 729 (903)
...+++.+++.+|.+ ++++++|+++++..++.+++++||.|++++|+|+.+...+ +..|++++.++.
T Consensus 85 ~~~Le~~lA~leg~~-----~~iv~~sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~v~~~~---- 155 (427)
T PRK07049 85 SEIVEDRLAVYEGAE-----SAALFSSGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGVGAVGFAD---- 155 (427)
T ss_pred HHHHHHHHHHHhCCC-----cEEEEccHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCcEEEEEeC----
Confidence 456777777777632 4777777778999999999999999999999999997664 567999887762
Q ss_pred CcccCHHHHHHHhh-----cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh---CCcEEEEecCCCCCccCCCCCCC
Q 043334 730 GFKMTEKTLVTILE-----TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK---YGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 730 ~f~ld~~~L~~~l~-----~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k---~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
+ .|++.+++.+. +++ ++|++++|+ ||||.+++.+++.+|++.|+. ++++||+||+|....+.. +
T Consensus 156 ~--~d~~~l~~~l~~~~~~~~t-klv~lesP~-NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~~-p--- 227 (427)
T PRK07049 156 G--LSEAAIGAAAEAAAAKGRV-SLILIETPA-NPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQK-P--- 227 (427)
T ss_pred C--CCHHHHHHHHHhhccCCCc-eEEEEECCC-CCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccCC-c---
Confidence 1 46677776664 234 599999998 999999999999999988654 689999999985432211 1
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ .. +..|+++||||.+| .+|+|+||++++++ +++.+.+... ..+.+...|+++...|
T Consensus 228 ------l----~~----g~divv~S~SK~~gG~~glr~G~vv~~~~-l~~~l~~~~~~~g~~ls~~~a~l~~r~L 287 (427)
T PRK07049 228 ------L----EH----GADLSVYSLTKYVGGHSDLVAGAVLGRKA-LIRQVRALRSAIGTQLDPHSCWMLGRSL 287 (427)
T ss_pred ------c----cc----CCCEEEEcCceeecCCCCcEEEEEECCHH-HHHHHHHHHHhcCCCCCHHHHHHHHcCC
Confidence 1 11 25789999999999 69999999998876 9898887655 4558888888887777
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=199.18 Aligned_cols=178 Identities=22% Similarity=0.294 Sum_probs=138.2
Q ss_pred cccCCcccCcchhHHHHHH-hhcC-CCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 2 MVIPSIFIPEDWSFTFYEG-LNRH-PDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~-L~~~-~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
.|.|+||+|+..+..++.. +... +. ....+|||+|||+|.+++.++...++.+|+|+|+|+.+++.|++|+..+++
T Consensus 105 ~v~~~vlipr~~te~lv~~~l~~~~~~--~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l 182 (307)
T PRK11805 105 YVDERVLVPRSPIAELIEDGFAPWLED--PPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL 182 (307)
T ss_pred EECCCCcCCCCchHHHHHHHHHHHhcc--CCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 5899999999766554443 2221 21 113689999999999999999998889999999999999999999998876
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
.++++++++|+.+.... ++||+|++||||+.......+..++. + .+..++.+
T Consensus 183 ---------------~~~i~~~~~D~~~~l~~--~~fDlIvsNPPyi~~~~~~~l~~~~~-~---------eP~~AL~g- 234 (307)
T PRK11805 183 ---------------EDRVTLIESDLFAALPG--RRYDLIVSNPPYVDAEDMADLPAEYR-H---------EPELALAA- 234 (307)
T ss_pred ---------------CCcEEEEECchhhhCCC--CCccEEEECCCCCCccchhhcCHhhc-c---------CccceeeC-
Confidence 25799999999775432 37999999999998765444443332 2 33445554
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.+|++.++.+++++.++|+|||.++++++.. +..+.+++.+.+|.....
T Consensus 235 --g~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~~~~~~~ 284 (307)
T PRK11805 235 --GDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVPFTWLEF 284 (307)
T ss_pred --CCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCCCEEEEe
Confidence 78899999999999999999999999999875 334677888878765444
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-19 Score=198.18 Aligned_cols=223 Identities=14% Similarity=0.056 Sum_probs=164.2
Q ss_pred CCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcC
Q 043334 624 QSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPA 703 (903)
Q Consensus 624 ~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~ 703 (903)
++++++++.+++++.+....+ ..+|.....+.+++.+++++| + + ++++++|+++++..++.+++++||.|+++.
T Consensus 5 ~~~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~~a~~~g-~---~-~~~~~~~gt~a~~~~~~~l~~~gd~v~~~~ 78 (338)
T cd06502 5 DTVTGPTPEMLEAMAAANVGD-DVYGEDPTTAKLEARAAELFG-K---E-AALFVPSGTAANQLALAAHTQPGGSVICHE 78 (338)
T ss_pred ccCCCCCHHHHHHHHhcccCC-cccCCCHHHHHHHHHHHHHhC-C---C-eEEEecCchHHHHHHHHHhcCCCCeEEEec
Confidence 556778899999988765332 234555678888889988888 2 2 566777777999999999999999999999
Q ss_pred CCcHHHHH---HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-------CCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 704 GSNGNYVS---AARFLKANIVNIPTESEVGFKMTEKTLVTILET-------VKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 704 P~y~~~~~---~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-------~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
|+|..+.. .+...|++++.++.+ .+.+|++++++++++ ++ ++|++++|+ || |.+++.+++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~i~~~~~~~~~~~-~~v~l~~p~-n~-g~~~~~~~l~~i~ 152 (338)
T cd06502 79 TAHIYTDEAGAPEFLSGVKLLPVPGE---NGKLTPEDLEAAIRPRDDIHFPPP-SLVSLENTT-EG-GTVYPLDELKAIS 152 (338)
T ss_pred CcceeeecCCcHHHHcCceEEeecCC---CCcCCHHHHHHHhhccCCCcCCcc-eEEEEEeec-CC-ccccCHHHHHHHH
Confidence 99876432 355689999999874 256999999999875 34 589999998 98 7777999999999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE-eCcHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV-LNHPQLVDAF 852 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv-~~~~~li~~l 852 (903)
++|+++|+++|+||+|.......... + ...... +..+++.|+||.|+++| |+++ ++++ +++.+
T Consensus 153 ~~~~~~~~~livDea~~~~~~~~~~~---~----~~~~~~-----~~d~~~~s~sK~~~~~~---g~~~~~~~~-~~~~~ 216 (338)
T cd06502 153 ALAKENGLPLHLDGARLANAAAALGV---A----LKTYKS-----GVDSVSFCLSKGGGAPV---GAVVVGNRD-FIARA 216 (338)
T ss_pred HHHHHcCCeEeechHHHHHHHHhcCC---C----HHHHHh-----cCCEEEEeccccCCCcc---ceEEECCHH-HHHHH
Confidence 99999999999999984221111110 1 111111 12356889999999887 6554 5555 88888
Q ss_pred HhCCC----CCCCcHHHHHHHHHHHh
Q 043334 853 SSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 853 ~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
..... ....+.+.|.++..+|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~a~~~~L~ 242 (338)
T cd06502 217 RRRRKQAGGGMRQSGFLAAAGLAALE 242 (338)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHhc
Confidence 76542 34456778888888884
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=197.66 Aligned_cols=263 Identities=11% Similarity=0.070 Sum_probs=185.3
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...|||..| .+.++ .++.+.+++.+++.++.. ..+..+.+..+++.+++++|.+ ++++++|+++++.
T Consensus 24 ~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-----~~~~~~sg~~a~~ 98 (379)
T TIGR00707 24 VNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGAD-----RVFFCNSGAEANE 98 (379)
T ss_pred CCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCC-----EEEEeCCcHHHHH
Confidence 457789999886 44455 458899999998876422 2234567889999999988753 6999999999999
Q ss_pred HHHHHhc---c----CCCeEEEcCCCcHHHHHHHHHcCCEEEE----ecCCCCCCccc--CHHHHHHHhhcCCCcEEEEE
Q 043334 687 KLVLCCI---L----EGGTLCFPAGSNGNYVSAARFLKANIVN----IPTESEVGFKM--TEKTLVTILETVKKPWVYIS 753 (903)
Q Consensus 687 ~ll~~l~---~----pGD~Vlv~~P~y~~~~~~~~~~G~~vv~----v~~~~~~~f~l--d~~~L~~~l~~~~~~~vil~ 753 (903)
.++..+. . +||+|++++|+|..+...+...++.... .++..+..+.. |++.+++.+++++ ++|+++
T Consensus 99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~v~~~ 177 (379)
T TIGR00707 99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDET-AAVIVE 177 (379)
T ss_pred HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCe-eEEEEE
Confidence 8887552 2 3799999999998887777666654422 23322222222 8999999987765 477775
Q ss_pred CCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc
Q 043334 754 GPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML 832 (903)
Q Consensus 754 ~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g 832 (903)
.++ ||+|.. ++.+++++|.++|+++++++|+||+|.++.+.+... ........+ ++ .+|||.++
T Consensus 178 p~~-~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~-------~~~~~~~~~----d~---~t~sK~~~ 242 (379)
T TIGR00707 178 PIQ-GEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFF-------AYEHYGIEP----DI---ITLAKGLG 242 (379)
T ss_pred ccc-cCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh-------hHHhcCCCC----CE---EEEccccc
Confidence 443 777764 799999999999999999999999998766654321 111111111 23 26899999
Q ss_pred cccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 833 TGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 833 ~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+|+|+||++++++ +++.+.... ...+.+.++|.++.++|+.-+. ..+.+++.++++.++++.+
T Consensus 243 -~G~riG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~aa~aaL~~~~~--~~~~~~~~~~~~~~~~~l~ 307 (379)
T TIGR00707 243 -GGVPIGATLAKEE-VAEAFTPGDHGSTFGGNPLACAAALAVLEVIEK--ERLLENVKEKGDYFKERLE 307 (379)
T ss_pred -CCcccEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH
Confidence 9999999999877 999988643 3566789999999988842111 2244555556555555443
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=195.52 Aligned_cols=202 Identities=12% Similarity=0.101 Sum_probs=153.3
Q ss_pred CCCcHHHHHHHHHHHHccCCC---CC-c----hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCe
Q 043334 627 LPIPSLVKAAIFESFARQNMS---ES-E----IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGT 698 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~---~G-~----~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~ 698 (903)
-+..+.+.+++.+....++.+ .| . .+....+++.+++.+|+ + ++++|+|+++++..++.+++++||.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~---~i~~~~g~t~al~~~l~~~~~~gd~ 85 (361)
T cd06452 11 GRLTPEARKALIEWGDGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D---EARVTPGAREGKFAVMHSLCEKGDW 85 (361)
T ss_pred CCCCHHHHHHHHHHhcccCCccccccccccccCchHHHHHHHHHHHcCC--c---eEEEeCCHHHHHHHHHHHhcCCCCE
Confidence 345566666665554322211 11 1 23355677777787887 3 7999999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 699 LCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 699 Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
|+++.++|......++..|++++.++++.+++|.+|++.+++++++ ...+++++++|+ ||||.+.+ +++|
T Consensus 86 Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~-n~tG~~~~---~~~i 161 (361)
T cd06452 86 VVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVD-GNYGNLHD---AKKI 161 (361)
T ss_pred EEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCC-CCCeeecc---HHHH
Confidence 9999998877777889999999999997655578999999998863 123599999998 99998865 7889
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
.++|+++|++||+|++|+. ...+. + .. .. +..++++|+||.++ +|.|+||++++++ +++.+
T Consensus 162 ~~~~~~~~~~vivD~a~~~---g~~~~---~----~~---~~----~~d~~~~s~~K~l~-~~~~~G~l~~~~~-~~~~l 222 (361)
T cd06452 162 AKVCHEYGVPLLLNGAYTV---GRMPV---S----GK---EL----GADFIVGSGHKSMA-ASAPIGVLATTEE-WADIV 222 (361)
T ss_pred HHHHHHcCCeEEEECCccc---CCcCC---C----HH---Hc----CCCEEEecCCcccc-CCCCeEEEEECHH-HHHHH
Confidence 9999999999999999962 11111 1 11 11 35789999999997 5569999999877 88888
Q ss_pred HhCC
Q 043334 853 SSFP 856 (903)
Q Consensus 853 ~~~~ 856 (903)
.+..
T Consensus 223 ~~~~ 226 (361)
T cd06452 223 FRTS 226 (361)
T ss_pred hccc
Confidence 7654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=185.78 Aligned_cols=164 Identities=18% Similarity=0.268 Sum_probs=132.4
Q ss_pred CcccCCcccCc----chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh
Q 043334 1 MMVIPSIFIPE----DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL 76 (903)
Q Consensus 1 ~~~~p~vfiP~----~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~ 76 (903)
|.+.||||||| +|.....+.+++. +..++..+||+|||+|.+++.++..+|...|+++|.|+.++..|.+|+..
T Consensus 117 l~~~pgVlIPRpETEE~V~~Vid~~~~~--~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr 194 (328)
T KOG2904|consen 117 LVCKPGVLIPRPETEEWVEAVIDALNNS--EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQR 194 (328)
T ss_pred EEecCCeeecCccHHHHHHHHHHHHhhh--hhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHH
Confidence 46889999998 4555545555543 23566789999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcchhhhcccCCcEEEEEccc----cccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccc
Q 043334 77 NALDEKGQPIYDAEKKTLLDRVEFHESDL----LAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSN 152 (903)
Q Consensus 77 ~gl~~~~~~~~~~~~~~~~~~v~~~~gDl----~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~ 152 (903)
+++ .+++.+++-++ ........+++|+++|||||+..++...+..++..+ +|
T Consensus 195 ~~l---------------~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~y---------Ep 250 (328)
T KOG2904|consen 195 LKL---------------SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLY---------EP 250 (328)
T ss_pred Hhh---------------cCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheec---------Cc
Confidence 887 36788775444 443333345999999999999998877666666654 44
Q ss_pred cccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCC
Q 043334 153 YCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR 193 (903)
Q Consensus 153 ~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~ 193 (903)
..|+.| +.+|.+.+..++.-+.|+|+|||.+.++....
T Consensus 251 ~lALdG---g~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 251 KLALDG---GLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred hhhhcc---ccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 556777 78899999999999999999999999988744
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=196.35 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcc
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFK 732 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ 732 (903)
....+.+.+++++|.+ .+++++|+++++..++.+++++||.|+++.+.|......++..|++++.++.+.+++|.
T Consensus 52 ~~~~~~e~lA~~~g~~-----~~~i~~g~~~a~~~~~~~l~~~gd~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~ 126 (370)
T TIGR02539 52 PIHDFLEDLAEFLGMD-----EARVTHGAREGKFAVMHALCKEGDWVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYK 126 (370)
T ss_pred HHHHHHHHHHHHhCCC-----ceEEECChHHHHHHHHHHhhCCCCEEEECCcccHHHHHHHHHcCCEEEEEecCCcccCC
Confidence 3445556688888875 35668999999999999999999999999888655557789999999999987655788
Q ss_pred cCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 733 MTEKTLVTILET------VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 733 ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
+|++++++.+++ ...++|++++|+ ||||...+ +++|.++|+++|+++|+||+|+... .+. +
T Consensus 127 ~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~-~~~G~~~~---l~~i~~la~~~~~~livDea~~~g~---~~~---~--- 193 (370)
T TIGR02539 127 VDPEGYGEVIEEVEDESGKPPVLALLTHVD-GEYGNLPD---AGKVAKVCREKGVPLLLNCAYTVGR---MPV---S--- 193 (370)
T ss_pred cCHHHHHHHHHHhhhccCCCcEEEEEECCC-CCCccccC---HHHHHHHHHHcCCeEEEECccccCC---cCC---C---
Confidence 999999999864 123589999998 99999887 7788889999999999999996421 110 0
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~ 857 (903)
.. .. +..++++||||.++ +|.|+||++++++ +++.+.....
T Consensus 194 -~~---~~----~~di~v~s~sK~~~-~~g~~G~l~~~~~-~i~~l~~~~~ 234 (370)
T TIGR02539 194 -AK---EI----GADFIVGSGHKSMA-ASGPCGVLGMSEE-WEDIVLRKSR 234 (370)
T ss_pred -HH---Hc----CCCEEEeeCccccc-CCCCEEEEEECHH-HHhhhccccc
Confidence 11 11 24577799999998 5778999999887 9998887654
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-18 Score=193.37 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=166.0
Q ss_pred CCCeEEccCC-CCCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVD-QSFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g-~p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.+.++++.+ .++++.++.+++++.+.+..++. .+|..+....+++.+++++|.+ + .|++++|+++ .
T Consensus 45 ~~~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~---~-~i~~~sG~~a-~ 119 (410)
T PRK13392 45 PRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKE---S-ALLFTSGYVS-N 119 (410)
T ss_pred CceEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCC---C-EEEECcHHHH-H
Confidence 3456777654 46677899999999998887643 2455556678888899988853 2 6999999744 4
Q ss_pred HHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh----cCCCcEEEEECCCCCC
Q 043334 686 NKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE----TVKKPWVYISGPTINP 759 (903)
Q Consensus 686 ~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~----~~~~~~vil~~P~~NP 759 (903)
..++..++ .+||.|+++.+.|..+...++..|+++..++.+ |.+.+++.+. +++ ++|++++|+ ||
T Consensus 120 ~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-------d~~~l~~~l~~~~~~~t-~~v~i~~~~-n~ 190 (410)
T PRK13392 120 DAALSTLGKLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHN-------DLADLEEQLASVDPDRP-KLIAFESVY-SM 190 (410)
T ss_pred HHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhccCCCC-EEEEEeCCC-CC
Confidence 44455454 489988888878888888888899998777532 3444544443 334 589999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++|+++|+||+|+...|+..... .... .+.. ....++++||||.||++| |
T Consensus 191 tG~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~g~g------~~~~-~~~~--~~~div~~tlsK~~g~~G---G 255 (410)
T PRK13392 191 DGDIAP---IEAICDLADRYNALTYVDEVHAVGLYGARGGG------IAER-DGLM--DRIDMIQGTLAKAFGCLG---G 255 (410)
T ss_pred Cccccc---HHHHHHHHHHcCCEEEEECCccccCcCCCCCc------hhhh-ccCC--CCCcEEEEEChHhhhccc---c
Confidence 999998 88888999999999999999985455433211 1111 1111 013488999999999999 9
Q ss_pred EEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
|++++++ +++.+++... ..+.+++.|.++..+|+
T Consensus 256 ~~~~~~~-~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~ 293 (410)
T PRK13392 256 YIAASAD-LIDFVRSFAPGFIFTTALPPAVAAGATAAIR 293 (410)
T ss_pred hhhcCHH-HHHHHHHhCcchhccCcCCHHHHHHHHHHHH
Confidence 9999876 9998887653 23455577888888884
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=194.41 Aligned_cols=229 Identities=12% Similarity=0.079 Sum_probs=154.1
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG 696 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG 696 (903)
+|||+.++++. +++.+++++.+..... ..+|.......+++.+++++|++ .+++++|+++++..++.+++.+|
T Consensus 1 ~~~~~~~~~~~-p~~~~~~a~~~~~~~~-~~Y~~~~~~~~L~~~la~~~g~~-----~~~v~~~g~~a~~~~l~~~~~~g 73 (333)
T PRK10534 1 MIDLRSDTVTR-PSRAMLEAMMAAPVGD-DVYGDDPTVNALQDYAAELSGKE-----AALFLPTGTQANLVALLSHCERG 73 (333)
T ss_pred CcccccccCCC-CCHHHHHHHHhccCCC-cccCCCHHHHHHHHHHHHHhCCC-----eEEEeCchHHHHHHHHHHhcCCC
Confidence 47899999988 7888999887654332 22332333445555556667763 34566666666666677889999
Q ss_pred CeEEEcCCCcHH-HHHH-HHHcC-CEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHH
Q 043334 697 GTLCFPAGSNGN-YVSA-ARFLK-ANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 697 D~Vlv~~P~y~~-~~~~-~~~~G-~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~ee 768 (903)
|.|+++.|+|.. |... +...| ++++.++.+ .+|.+|+++++++++++ ..++|++|||+ ||.+++.++
T Consensus 74 d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~---~G~v~~~~~ 148 (333)
T PRK10534 74 EEYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAA--ADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH---NGKVLPREY 148 (333)
T ss_pred CeeEEechhhhhHhcCCchHHhcCceEEeecCC--CCCCCCHHHHHHhhcccCcCcccceEEEEecCC---CCeecCHHH
Confidence 999999988853 4322 33444 788888875 35889999999988652 22589999664 599999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee-EEEeCcHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQ 847 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~ 847 (903)
+++|+++|++++++||+||+|. |........+ ...+.... ++++ .||||.|+++ +| |++++++
T Consensus 149 l~~i~~~~~~~~~~lvvDEA~~---~~~~~~~~~~----~~~~~~~~---~~~~--~s~SK~~~~~---~G~~~~~~~~- 212 (333)
T PRK10534 149 LKQAWEFTRERNLALHVDGARI---FNAVVAYGCE----LKEITQYC---DSFT--ICLSKGLGTP---VGSLLVGNRD- 212 (333)
T ss_pred HHHHHHHHHHcCCeEEeeHHHH---HHHHHHcCCC----HHHHHhcC---CEEE--EEeEcCCCCc---ccceEEcCHH-
Confidence 9999999999999999999984 3211000001 11122211 2333 4899998764 78 6777776
Q ss_pred HHHHHHhCCCCC----CCcHHHHHHHHHHH
Q 043334 848 LVDAFSSFPGLS----KPHSTVRYAIKKLL 873 (903)
Q Consensus 848 li~~l~~~~~~~----~~s~~~Q~aa~~~L 873 (903)
+++.+.++.... ..+.+.|.++...|
T Consensus 213 ~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l 242 (333)
T PRK10534 213 YIKRARRWRKMTGGGMRQAGILAAAGLYAL 242 (333)
T ss_pred HHHHHHHHHHHhCCchhhHHHHHHHHHHHH
Confidence 999998766422 23446677777777
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-18 Score=193.45 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=174.8
Q ss_pred CCCCCeEEccCCCC--CCCC-cHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLPI-PSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~~-p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...||+..|.+ .++. .+.+.+++.+.+.... ...+..+++.++++++++..|. + ++++++|+++++.
T Consensus 36 ~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~----~-~v~~~~gg~eA~~ 110 (396)
T PRK02627 36 DDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGM----D-KVFFCNSGAEANE 110 (396)
T ss_pred CCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhcCC----C-EEEECCCcHHHHH
Confidence 46778899987643 4554 5789999888876532 2234577899999999987653 3 8999999999999
Q ss_pred HHHHHhccCC-------CeEEEcCCCcHHHHHHHHHcCCEEE----EecCCCCCCc----ccCHHHHHHHhhcCCCcEEE
Q 043334 687 KLVLCCILEG-------GTLCFPAGSNGNYVSAARFLKANIV----NIPTESEVGF----KMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 687 ~ll~~l~~pG-------D~Vlv~~P~y~~~~~~~~~~G~~vv----~v~~~~~~~f----~ld~~~L~~~l~~~~~~~vi 751 (903)
.++..+...+ ++|++..++|..+...+...+.... ..++. .++ ..|++.+++.+.+++ ++|+
T Consensus 111 ~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~i~~~~-~~vi 187 (396)
T PRK02627 111 AAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEPLV--EGFIYVPFNDIEALKAAITDKT-AAVM 187 (396)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCCCC--CCceEeCCCCHHHHHHhcCCCe-EEEE
Confidence 9998776544 6799999999877655544433221 11221 122 128999999987655 4777
Q ss_pred EECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 752 ISGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 752 l~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
+++++ |||| .+++.+.+++|.++|+++|++||+||+|.++.+.+... + .....-.+ . +.||||.
T Consensus 188 i~p~~-~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~---~----~~~~~~~p----d---i~t~sK~ 252 (396)
T PRK02627 188 LEPIQ-GEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLF---A----YQHYGIEP----D---IMTLAKG 252 (396)
T ss_pred Eeccc-CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCcee---e----ehhcCCCC----C---EEEEcch
Confidence 77774 9999 78999999999999999999999999998876655321 1 11111111 2 3479999
Q ss_pred cccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 831 MLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
++ +|+|+||++++++ +++.+.... .+.+.+.+.|.++.++|+
T Consensus 253 ~~-~G~rig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~ 296 (396)
T PRK02627 253 LG-GGVPIGAVLAKEK-VADVFTPGDHGSTFGGNPLACAAALAVIE 296 (396)
T ss_pred hh-CCcccEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 98 9999999999987 888887533 377789999999999994
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-17 Score=186.03 Aligned_cols=229 Identities=14% Similarity=0.146 Sum_probs=163.8
Q ss_pred eEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 617 LIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 617 ~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
+++|+.+. -..+.++++.+++.+.+.++.. ..|..+.++++++.+++++|.+ + .|++++|+ +++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~-~iv~~sg~-~a~~~~ 77 (349)
T cd06454 3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKE---A-ALVFSSGY-AANDGV 77 (349)
T ss_pred ceecccCCccccCCCHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCC---C-EEEeccHH-HHHHHH
Confidence 34454332 2234468899999999876432 2366778888999999988863 2 56666665 566666
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc----CCCcEEEEECCCCCCcccCC
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET----VKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~----~~~~~vil~~P~~NPTG~v~ 764 (903)
+.+++++||.|++++|+|+.+...++..|++++.++. +|++.+++.+++ .+..++++++|+ ||||.+.
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~-~~tG~~~ 149 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVY-SMDGDIA 149 (349)
T ss_pred HHHhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccc-cCCCCcc
Confidence 7888899999999999999999899999999988863 467788888764 233577778887 9999987
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+ +++|.++|+++|+++|+|++|+...+...... . .... ... .+.+++++|+||.++++| ||++++
T Consensus 150 ~---~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~-~---~~~~-~~~----~~~~i~~~s~sK~~~~~g---G~i~~~ 214 (349)
T cd06454 150 P---LPELVDLAKKYGAILFVDEAHSVGVYGPHGRG-V---EEFG-GLT----DDVDIIMGTLGKAFGAVG---GYIAGS 214 (349)
T ss_pred C---HHHHHHHHHHcCCEEEEEccccccccCCCCCC-h---hhhc-ccc----ccCcEEEeechhhhcccC---CEEECC
Confidence 7 78889999999999999999964333221110 0 0111 111 247899999999998766 999988
Q ss_pred cHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 845 HPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 845 ~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
++ +++.+..... ....+...+.++...|.
T Consensus 215 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 247 (349)
T cd06454 215 KE-LIDYLRSYARGFIFSTSLPPAVAAAALAALE 247 (349)
T ss_pred HH-HHHHHHHhchhhhccCCCCHHHHHHHHHHHH
Confidence 76 8887765432 23455666667777773
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=189.46 Aligned_cols=216 Identities=11% Similarity=0.034 Sum_probs=146.5
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc-
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL- 694 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~- 694 (903)
.+++|+.|.++. +++.+.+++.... ......++.+....+++.+++++|.+. .+++++|+.+.+ .++.++++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~----~~~~~~Gs~a~~-~~l~~~~~~ 78 (353)
T PLN02721 6 RVVDLRSDTVTK-PTDAMRAAMANAE-VDDDVLGYDPTALRLEEEMAKIFGKEA----ALFVPSGTMGNL-ISVLVHCDV 78 (353)
T ss_pred hhhhhhcccccC-CCHHHHHHHHhcc-CCCcccCCCHHHHHHHHHHHHHhCCce----eEEecCccHHHH-HHHHHHccC
Confidence 468899999886 5677777776531 111122333334556666666666542 366667766655 56666777
Q ss_pred CCCeEEEcCCCcHHHHH---HHHHcCCEEEEecCCCCCCcccCHHHHHHHhh-------cCCCcEEEEECCCCCCcccCC
Q 043334 695 EGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESEVGFKMTEKTLVTILE-------TVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 695 pGD~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~-------~~~~~~vil~~P~~NPTG~v~ 764 (903)
+||.|++++|+|..... .+...|++++.+|.++ ++.+|++.+++.++ +++ +++++++|++||||.++
T Consensus 79 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~~~~~-~~v~l~~~~~np~G~~~ 155 (353)
T PLN02721 79 RGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNE--DGTMDLDAIEAAIRPKGDDHFPTT-RLICLENTHANCGGRCL 155 (353)
T ss_pred CCCeEEEcCccceehhcccchhhhcCceeEecCCCc--CCCcCHHHHHHHHHhccCCCCCcc-eEEEEeccccccCCccc
Confidence 99999999999754333 5778899999998763 46789999999997 345 58888776559999999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE-EEe
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF-LVL 843 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~-lv~ 843 (903)
+.+++++|.++|+++|++||+|++|....+.... .+. ...... ...++.|+||.++. ++|| +++
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~---~~~---~~~~~~------~d~~~~s~sK~l~~---~~G~~~~~ 220 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDGARIFNASVALG---VPV---HRLVKA------ADSVSVCLSKGLGA---PVGSVIVG 220 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhC---CCH---HHHhhh------CCEEEEecccccCC---ceeeEEec
Confidence 9999999999999999999999998421111001 111 111111 22345579999863 4676 455
Q ss_pred CcHHHHHHHHhCCC
Q 043334 844 NHPQLVDAFSSFPG 857 (903)
Q Consensus 844 ~~~~li~~l~~~~~ 857 (903)
+++ +++.+.....
T Consensus 221 ~~~-~~~~~~~~~~ 233 (353)
T PLN02721 221 SKS-FIRKAKRLRK 233 (353)
T ss_pred CHH-HHHhHHHHHH
Confidence 554 8887766543
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-18 Score=193.05 Aligned_cols=210 Identities=15% Similarity=0.156 Sum_probs=163.7
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHH--HHccCC-----CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecC-chHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFES--FARQNM-----SESEIDVTPSIQQYIKSNFGFPIDINAEFIYAD-CSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~a--l~~y~~-----~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~-Gs~~al 685 (903)
+.+++++++|++++++|+.+.++..++ ...|.+ ..|.+++++++++++++.+|.+.+ ++++++ |++++.
T Consensus 19 ~~~~~~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~---~v~~~~~g~~~~~ 95 (398)
T cd00613 19 DQSMSFLGSGTYKHNPPAVIKRNILENEFYTAYTPYQPEISQGRLQALFELQTMLCELTGMDVA---NASLQDEATAAAE 95 (398)
T ss_pred ccCcccccccccCCcCcHHHHHHhccccCcccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc---ceeccCchHHHHH
Confidence 446799999999999999888776665 112443 578899999999999999998654 465555 665666
Q ss_pred HHHHHHhccC--CCeEEEcCCCcHHHHHHHHHcC----CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 686 NKLVLCCILE--GGTLCFPAGSNGNYVSAARFLK----ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 686 ~~ll~~l~~p--GD~Vlv~~P~y~~~~~~~~~~G----~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
..+..+++.+ ||+|++++|.|+.+...+...| ++++.++++. ++.+|++++++.+++++ ++|++++| ||
T Consensus 96 ~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~t-~~viv~~~--~~ 170 (398)
T cd00613 96 AAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDE--GGTVDLEALKEEVSEEV-AALMVQYP--NT 170 (398)
T ss_pred HHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCC--CCCcCHHHHHHhcCCCe-EEEEEECC--CC
Confidence 6666666776 9999999999999998888887 9999999853 45689999999998766 58888887 48
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc----c
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG----A 835 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~----G 835 (903)
||.+. +.+++|.++|+++|+++|+|+++......... . .. +..++++|++|.+ +| |
T Consensus 171 ~G~~~--~~l~~i~~la~~~g~~livD~~~~~~~~~~~~----------~---~~----~~d~~~~s~~K~~-~p~g~Gg 230 (398)
T cd00613 171 LGVFE--DLIKEIADIAHSAGALVYVDGDNLNLTGLKPP----------G---EY----GADIVVGNLQKTG-VPHGGGG 230 (398)
T ss_pred Cceec--chHHHHHHHHHhcCCEEEEEeccccccCCCCh----------H---Hc----CCCEEEeeccccC-CCCCCCC
Confidence 99994 45799999999999999999987432211100 0 11 3679999999998 66 8
Q ss_pred ceeeEEEeCcHHHHHHH
Q 043334 836 LKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 836 lRiG~lv~~~~~li~~l 852 (903)
+|+||++.++. +++.+
T Consensus 231 p~~g~l~~~~~-~~~~~ 246 (398)
T cd00613 231 PGAGFFAVKKE-LVRFL 246 (398)
T ss_pred CceeEEEEhhh-hHhhC
Confidence 99999999887 77764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-17 Score=186.81 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=161.0
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCC--CCC-------chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNM--SES-------EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~--~~G-------~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
.+.+.|+.+... ++|..+.+++.+.+..+.. ..+ ..+..+.+++.+++.+|.+ +++ +|++|+|+++++
T Consensus 18 ~~~~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~-~i~~~~~~t~~i 94 (401)
T PRK10874 18 DAGVYLDSAATA-LKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAP-DAK-NIVWTRGTTESI 94 (401)
T ss_pred CceEEEeCCccc-CCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCC-CCC-EEEEECCHHHHH
Confidence 357888887766 4677889998887764321 112 1334566777788888873 234 899999999999
Q ss_pred HHHHHHh----ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 686 NKLVLCC----ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 686 ~~ll~~l----~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
..++.++ +++||+|++++|+|++ +...++..|++++.++++. ++.+|++++++.+++++ +++++++|+
T Consensus 95 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t-~lv~i~~~~- 170 (401)
T PRK10874 95 NLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGA--DRLPDVDLLPELITPRT-RILALGQMS- 170 (401)
T ss_pred HHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCC--CCcCCHHHHHHhcCcCc-EEEEEeCCc-
Confidence 9999887 4799999999999865 5566788999999999863 56789999999998877 599999998
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
||||.+++ +++|.++|+++|+++|+|++|+...+. .+ +. .. +..+++.|++|.+|.+|
T Consensus 171 n~tG~~~~---~~~i~~l~~~~g~~~ivD~a~~~g~~~------~~----~~---~~----~~d~~~~s~~K~~gp~G-- 228 (401)
T PRK10874 171 NVTGGCPD---LARAITLAHQAGMVVMVDGAQGAVHFP------AD----VQ---AL----DIDFYAFSGHKLYGPTG-- 228 (401)
T ss_pred ccccCcCC---HHHHHHHHHHcCCEEEEECCccccccc------CC----ch---hc----CCCEEEEecccccCCCc--
Confidence 99999998 778888999999999999999532221 01 11 11 24678899999998777
Q ss_pred eeEEEeCcHHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAFS 853 (903)
Q Consensus 838 iG~lv~~~~~li~~l~ 853 (903)
+||++++++ +++.+.
T Consensus 229 ~G~l~~~~~-~~~~~~ 243 (401)
T PRK10874 229 IGVLYGKSE-LLEAMS 243 (401)
T ss_pred cEEEEEchH-HHhcCC
Confidence 599999877 777664
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=184.78 Aligned_cols=182 Identities=24% Similarity=0.332 Sum_probs=140.3
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.+.|++|+|+.-+..+.+.+..... ..++.+|||+|||+|.+++.++...+..+|+|+|+|+.+++.|++|+. ++.
T Consensus 81 ~~~~~~lipr~~te~l~~~~~~~~~-~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~-- 156 (275)
T PRK09328 81 KVSPGVLIPRPETEELVEWALEALL-LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL-- 156 (275)
T ss_pred EECCCceeCCCCcHHHHHHHHHhcc-ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC--
Confidence 5789999999666666665542211 235679999999999999999999888999999999999999999986 222
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
..++.++++|+.+... .++||+|++||||+.......+..++..+ .+..++. +
T Consensus 157 -------------~~~i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~---------ep~~al~---~ 209 (275)
T PRK09328 157 -------------GARVEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDH---------EPHLALF---G 209 (275)
T ss_pred -------------CCcEEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhc---------CCchhhc---C
Confidence 2479999999976543 23899999999999766544444444332 2333444 4
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
+.+|++.+..+++++.++|+|||.++++++..... .+++++.+.||..+....
T Consensus 210 g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~-~~~~~l~~~gf~~v~~~~ 262 (275)
T PRK09328 210 GEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGE-AVRALLAAAGFADVETRK 262 (275)
T ss_pred CCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHH-HHHHHHHhCCCceeEEec
Confidence 78899999999999999999999999999876554 457789999998666643
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-17 Score=185.60 Aligned_cols=192 Identities=14% Similarity=0.173 Sum_probs=152.9
Q ss_pred cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHH
Q 043334 630 PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGN 708 (903)
Q Consensus 630 p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~ 708 (903)
.+..++++.+++.... ..|..++++++++++++++|.+ ++++|+|+++++..++.++ ++|||+|++++|+|+.
T Consensus 10 ~~~e~~a~~~~~~~~~-~~~~g~~~~~~e~~la~~~g~~-----~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~ 83 (376)
T TIGR02379 10 TGQELEYIAEAISEGK-LSGDGPFSRRCETWLENRTGTK-----KALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVS 83 (376)
T ss_pred CHHHHHHHHHHHHcCC-ccCCcHHHHHHHHHHHHHhCCC-----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHH
Confidence 4555778888776533 3445678899999999987652 7999999999999988887 8999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecC
Q 043334 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTA 788 (903)
Q Consensus 709 ~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~Dea 788 (903)
+...+...|++++.+++++ ++|.+|+++++++++++++ +|+ |+ ||||...+ +++|.++|+++|++||+|++
T Consensus 84 ~~~~~~~~G~~~v~vd~d~-~~~~~d~~~le~~i~~~tk-~Ii---p~-~~~G~~~d---~~~I~~la~~~~i~vIeDaa 154 (376)
T TIGR02379 84 TANAFVLRGAKIVFVDIRP-DTMNIDETLIESAITHRTK-AIV---PV-HYAGVACD---MDTIMALANKHQLFVIEDAA 154 (376)
T ss_pred HHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCce-EEE---Ee-CCCCCccC---HHHHHHHHHHCCCEEEEECc
Confidence 9999999999999999986 4688999999999987664 554 76 89999987 67889999999999999999
Q ss_pred CCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc----hhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 789 FSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS----LKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 789 Y~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S----K~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
|+... |++... . ....+++|| |.+. +|.+.|+++++++++.++++.++
T Consensus 155 ~~~g~~~~~~~~---------g----------~~~~~~~fSf~~~K~l~-~g~~gG~v~~~~~~~~~~~~~~~ 207 (376)
T TIGR02379 155 QGVMSTYKGRAL---------G----------SIGHLGTFSFHETKNYT-SGGEGGALLINDQAFIERAEIIR 207 (376)
T ss_pred cccCCccCCccc---------C----------CCCCEEEEeCCCCCcCc-ccCCceEEEECCHHHHHHHHHHH
Confidence 97654 555431 1 111233444 8884 78899999999777888887543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.3e-18 Score=180.97 Aligned_cols=183 Identities=24% Similarity=0.333 Sum_probs=141.5
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.+.+++|+|+..+..+.+.+..... ..+.+|||+|||+|.++..+++.++..+++|+|+++.+++.|++|+..+++
T Consensus 61 ~~~~~~~~p~~~~~~l~~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-- 136 (251)
T TIGR03534 61 KVSPGVLIPRPDTEELVEAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-- 136 (251)
T ss_pred EECCCcccCCCChHHHHHHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 4678899998666655555433222 245689999999999999999988888999999999999999999988776
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
++++++++|+.+.... ++||+|++||||+.......+...+..+.+ ..++. .
T Consensus 137 --------------~~~~~~~~d~~~~~~~--~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~---------~~~~~---~ 188 (251)
T TIGR03534 137 --------------DNVTFLQSDWFEPLPG--GKFDLIVSNPPYIPEADIHLLDPEVRFHEP---------RLALF---G 188 (251)
T ss_pred --------------CeEEEEECchhccCcC--CceeEEEECCCCCchhhhhhcChhhhhcCC---------HHHHc---C
Confidence 4799999999875432 389999999999987665555444443322 22333 3
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+..+...+..+++.+.++|+|||.+++.++.... ..+++++++.||..+..+.+.
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~-~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQG-EAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEEECccHH-HHHHHHHHhCCCCceEEEeCC
Confidence 5778888999999999999999999999876554 445788999999887775543
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=185.80 Aligned_cols=208 Identities=16% Similarity=0.151 Sum_probs=158.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCC-------chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSES-------EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G-------~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
+.+.|+.+.-. ++|+.+.+++.+.+..+. +..+ ..+..+.+++.+++.+|.+ +++ +|++|+|+++++.
T Consensus 16 ~~iyld~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~-~~~-~i~~t~g~t~~l~ 92 (398)
T TIGR03392 16 GTVYLDSAATA-LKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAP-DAE-NIVWTRGTTESIN 92 (398)
T ss_pred CeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCC-CCC-eEEEeCChHHHHH
Confidence 57888888765 467888999888765421 1112 1223455666777777874 233 8999999999999
Q ss_pred HHHHHh----ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 687 KLVLCC----ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 687 ~ll~~l----~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
.++.++ +++||+|++++|+|++ +...++..|++++.+|++. ++.+|++.+++++++++ +++++++|+ |
T Consensus 93 ~~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~~~~~l~~~i~~~t-~lv~i~~~~-n 168 (398)
T TIGR03392 93 LVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGA--DLLPDIRQLPELLTPRT-RILALGQMS-N 168 (398)
T ss_pred HHHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHHhccCc-eEEEEECcc-c
Confidence 999887 4799999999999865 4566788999999999864 46689999999998877 589999998 9
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
|||.+++ +++|.++|+++|+++|+|++|+...+.- + +. .. +..+++.|.+|.+|.+| +
T Consensus 169 ~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~~~~~~------~----~~---~~----~~d~~~~s~~K~~gp~G--~ 226 (398)
T TIGR03392 169 VTGGCPD---LARAITLAHQYGAVVVVDGAQGVVHGPP------D----VQ---AL----DIDFYAFSGHKLYGPTG--I 226 (398)
T ss_pred cccccCC---HHHHHHHHHHcCCEEEEEhhhhcCCCCC------C----hh---hc----CCCEEEEecccccCCCc--e
Confidence 9999998 7788999999999999999996332210 1 11 11 24577888889988666 8
Q ss_pred eEEEeCcHHHHHHHH
Q 043334 839 GFLVLNHPQLVDAFS 853 (903)
Q Consensus 839 G~lv~~~~~li~~l~ 853 (903)
||++++++ +++.+.
T Consensus 227 G~l~~~~~-~~~~~~ 240 (398)
T TIGR03392 227 GVLYGKTE-LLEAMP 240 (398)
T ss_pred EEEEEcHH-HHhhCC
Confidence 99999877 777664
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=189.91 Aligned_cols=184 Identities=13% Similarity=0.113 Sum_probs=137.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEV 729 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~ 729 (903)
...+++.+++++|.+ +.++++|+++++..++.++++|||+|+++.|.|+.+... ++..|++++.++..
T Consensus 66 ~~~Le~~iA~~~g~~-----~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~--- 137 (400)
T PRK06234 66 STEVENKLALLEGGE-----AAVVAASGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGVEVTFVDTS--- 137 (400)
T ss_pred HHHHHHHHHHHhCCC-----cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCeEEEEECCC---
Confidence 344555555556642 467777777888888889999999999999988765543 47789999999762
Q ss_pred CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC--CcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 730 GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY--GARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 730 ~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~--~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++ |++||+|++|+...+. .+
T Consensus 138 ----d~e~l~~~i~~~t-klI~iesP~-NPtG~v~d---l~~I~~la~~~~~~i~livDea~~~~~~~-~~--------- 198 (400)
T PRK06234 138 ----NLEEVRNALKANT-KVVYLETPA-NPTLKVTD---IKAISNIAHENNKECLVFVDNTFCTPYIQ-RP--------- 198 (400)
T ss_pred ----CHHHHHHHhccCC-eEEEEECCC-CCCCCcCC---HHHHHHHHHhcCCCCEEEEECCCCchhcC-Cc---------
Confidence 6899999998877 599999998 99999998 78888888886 9999999999754332 11
Q ss_pred hhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCC--C--CCCCcHHHHHHHHHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFP--G--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~--~--~~~~s~~~Q~aa~~~L 873 (903)
+. . +..++++|+||.++++|+|+ ||++++++ +++.++... . ....+.+..+.+...|
T Consensus 199 l~----~----g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l 260 (400)
T PRK06234 199 LQ----L----GADVVVHSATKYLNGHGDVIAGFVVGKEE-FINQVKLFGIKDMTGSVIGPFEAFLIIRGM 260 (400)
T ss_pred hh----h----CCcEEEeeccccccCCCCceeEEEEecHH-HHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 11 1 25699999999999999886 99999887 888876432 1 3344444444444444
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=190.05 Aligned_cols=213 Identities=12% Similarity=0.058 Sum_probs=157.2
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHH-HccC----------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESF-ARQN----------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al-~~y~----------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
...++|..|++.. ++.+++++...+ ..|. ...+.+.+++.+++.+++.+|.+.. +|++++| ++
T Consensus 19 ~~~~~~~~~~~~~--~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~---~v~~~sg-t~ 92 (402)
T cd00378 19 RETLELIASENFT--SPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEYA---NVQPHSG-SQ 92 (402)
T ss_pred HhCeeeeccCCcC--CHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCce---eeecCCc-HH
Confidence 4578888777664 678888887654 2331 1223455667778888888998743 6777765 58
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHH-----HHHcCCEEEEecCCCC-CCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSA-----ARFLKANIVNIPTESE-VGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-----~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
++..++.++++|||+|++++|+|+.+... ++..|+++..++++.+ +++.+|++++++.+.....+++++++|+
T Consensus 93 a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~- 171 (402)
T cd00378 93 ANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASA- 171 (402)
T ss_pred HHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCcc-
Confidence 88889999999999999999999876544 6668888888877643 2688999999999864333588888887
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCC-CCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAF-SGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY-~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||+. . ++++|.++|+++|++||+|++| .++.+.+... .. +.. ..++++|+||++ +|+
T Consensus 172 ~~~~--~---~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~------~~---~~~------~dv~~~s~sK~l--~G~ 229 (402)
T cd00378 172 YPRP--I---DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFP------NP---LPG------ADVVTTTTHKTL--RGP 229 (402)
T ss_pred cCCC--c---CHHHHHHHHHhcCCEEEEEccchhhhhhcccCC------Cc---ccC------CcEEEeccccCC--CCC
Confidence 8753 3 3889999999999999999995 5555544321 01 111 136899999977 799
Q ss_pred eeeEEEeCcHHHHHHHHhCC
Q 043334 837 KFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~ 856 (903)
|.||++++++++++.+.+..
T Consensus 230 ~gg~i~~~~~~~~~~l~~~~ 249 (402)
T cd00378 230 RGGLILTRKGELAKKINSAV 249 (402)
T ss_pred CceEEEeccHHHHHHHHHHh
Confidence 99999998844988887654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.8e-17 Score=191.84 Aligned_cols=256 Identities=16% Similarity=0.187 Sum_probs=168.5
Q ss_pred CCCeEEccCCC-CCCC-CcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQ-SFLP-IPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~-~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+...++|+..+ -.+. +++...++..+++.+|+. .+|.....+.+++.+++++|.+ + .|++++|....
T Consensus 99 ~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~---~-ai~~~~G~~an 174 (489)
T PLN02483 99 TRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKP---A-AIVFGMGYATN 174 (489)
T ss_pred CceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCC---c-EEEECCHHHHH
Confidence 45677776543 1222 233444555555555542 2466677778888888888843 2 69999987766
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh-------cCC----CcEEEEE
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE-------TVK----KPWVYIS 753 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~-------~~~----~~~vil~ 753 (903)
+ .++.+++++||.|++++|+|+.+...++..|++++.++.+ |.+.+++.++ +++ +++++++
T Consensus 175 ~-~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~-------d~~~le~~l~~~i~~~~p~t~~p~~k~livv 246 (489)
T PLN02483 175 S-TIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHN-------TPSHLEEVLREQIAEGQPRTHRPWKKIIVIV 246 (489)
T ss_pred H-HHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCC-------CHHHHHHHHHhhhhccccccccCCceEEEEE
Confidence 6 5677899999999999999999999999999999999864 3455544443 111 2355565
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc
Q 043334 754 GPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT 833 (903)
Q Consensus 754 ~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~ 833 (903)
.+..|++|.+.+ +++|+++|+++|++||+||+|+...++..... ....++-.+ .+++|+++||||+||+
T Consensus 247 e~v~s~~G~~~~---l~~I~~la~~~~~~livDEa~s~g~~G~~G~g------~~~~~~v~~--~~~dI~~~SfSKs~g~ 315 (489)
T PLN02483 247 EGIYSMEGELCK---LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG------VCELLGVDP--ADVDIMMGTFTKSFGS 315 (489)
T ss_pred CCCCCCCCcccC---HHHHHHHHHHcCCEEEEECcCccCccCCCCCc------hHHhcCCCc--ccCcEEEEecchhccc
Confidence 554599999976 88999999999999999999974333322211 111111111 2578999999999998
Q ss_pred ccceeeEEEeCcHHHHHHHHhCCC-----CCCCcHHHHHHHHHHHhc---ccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 834 GALKFGFLVLNHPQLVDAFSSFPG-----LSKPHSTVRYAIKKLLGL---RERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 834 ~GlRiG~lv~~~~~li~~l~~~~~-----~~~~s~~~Q~aa~~~L~~---~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+| ||++++++ +++.+..... ...++...|. +.++|+. .++ .++..+.++.+++|++++.
T Consensus 316 ~G---G~i~~~~~-li~~l~~~~~~~~~~~~~~p~~~~~-~~aaL~~l~~~~g-----~~~~~~~~~~l~~~~~~l~ 382 (489)
T PLN02483 316 CG---GYIAGSKE-LIQYLKRTCPAHLYATSMSPPAVQQ-VISAIKVILGEDG-----TNRGAQKLAQIRENSNFFR 382 (489)
T ss_pred Cc---eEEEcCHH-HHHHHHHhCccccccCCcCHHHHHH-HHHHHHHHHhCcc-----ccchHHHHHHHHHHHHHHH
Confidence 88 99999887 9999987532 1223344443 4444421 111 1233445666777777654
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-17 Score=186.74 Aligned_cols=265 Identities=9% Similarity=0.026 Sum_probs=186.4
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..| ...++ ..+.+.+++.+.+.+.. ......+....+++.+.+..+ . + ++++++|+++++.
T Consensus 28 ~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~--~-~v~~~~sGseA~~ 102 (389)
T PRK01278 28 EDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNLYRIPEQERLAERLVENSF--A--D-KVFFTNSGAEAVE 102 (389)
T ss_pred CCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccccCChHHHHHHHHHHhhCC--C--C-EEEEcCCcHHHHH
Confidence 467788998765 23333 57788999988876521 111234556677888877542 2 2 7999999999999
Q ss_pred HHHHHh----ccCCC----eEEEcCCCcHHHHHHHHHcCCEEEEecCC-C-CCCcc----cCHHHHHHHhhcCCCcEEEE
Q 043334 687 KLVLCC----ILEGG----TLCFPAGSNGNYVSAARFLKANIVNIPTE-S-EVGFK----MTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 687 ~ll~~l----~~pGD----~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~-~-~~~f~----ld~~~L~~~l~~~~~~~vil 752 (903)
.++.+. ..+|| +|++.+++|.++...+...+......+.. + ..++. .|++.+++.+++++ ++|++
T Consensus 103 ~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~aviv 181 (389)
T PRK01278 103 CAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNT-AAILI 181 (389)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCe-EEEEE
Confidence 888776 45676 89999999998877776655443322110 0 12232 58999999987654 46666
Q ss_pred ECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+.+ |||+| .+++.+.+++|.++|++||+++|+||+|.++.+.+... . .....-.+ + +.||||.+
T Consensus 182 ep~-~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~---~----~~~~~~~p---d----i~t~sK~l 246 (389)
T PRK01278 182 EPI-QGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLF---A----HEWAGVTP---D----IMAVAKGI 246 (389)
T ss_pred ecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcce---e----ecccCCCC---C----EEEEehhc
Confidence 655 59999 89999999999999999999999999998776655421 1 01111111 1 35899999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+ +|+|+||++++++ +++.+..... +.+.+++.|.++.++|+.-.. +.+.+++.++.+.|+++++.+
T Consensus 247 ~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~l 314 (389)
T PRK01278 247 G-GGFPLGACLATEE-AAKGMTPGTHGSTYGGNPLAMAVGNAVLDVILA--PGFLDNVQRMGLYLKQKLEGL 314 (389)
T ss_pred c-CCcceEEEEEcHH-HHhccCCCCCCCCCCccHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999987 8888765543 667889999999888842111 234567778888888887765
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-17 Score=184.55 Aligned_cols=246 Identities=10% Similarity=0.012 Sum_probs=172.6
Q ss_pred EEccCCCCCCCCcHHHHHHHHHHHHccCCCC-C-------chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFESFARQNMSE-S-------EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~al~~y~~~~-G-------~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
+.|+.+... ++|+.+.+++.+.+..+.... + ..+..+.+++.+++.+|.+.+ +|++|+|+++++..++
T Consensus 2 ~yld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---~i~~~~g~t~a~~~~~ 77 (381)
T PRK02948 2 IYLDYAATT-PMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIGGEEQ---GIYFTSGGTESNYLAI 77 (381)
T ss_pred EeccCCCCC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCcHHHHHHHHH
Confidence 455555544 467888999888776532111 1 124466778888888887544 8999999999999888
Q ss_pred HHhc----cCCCeEEEcCCCcHHH---HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 690 LCCI----LEGGTLCFPAGSNGNY---VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 690 ~~l~----~pGD~Vlv~~P~y~~~---~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
.+++ ++||.|+++.+.|+.+ ...++..|++++.++++. ++.+|++.+++.+++++ ++|++++|+ ||||.
T Consensus 78 ~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~-~lv~~~~~~-n~tG~ 153 (381)
T PRK02948 78 QSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDK--SGLIRLVDLERAITPDT-VLASIQHAN-SEIGT 153 (381)
T ss_pred HHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCC--CCCCCHHHHHHhcCCCC-EEEEEECCc-CCcEe
Confidence 7775 5789999999666654 445677899999999864 46689999999987766 599999998 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+++ +++|.++|+++|+++|+|+++. |+..+. . +... +..+++.|+||.+|.+| +|+++
T Consensus 154 ~~~---~~~I~~l~~~~~~~vivD~~~~---~g~~~~---~-------~~~~----~~d~~~~s~~K~~gp~G--~G~l~ 211 (381)
T PRK02948 154 IQP---IAEIGALLKKYNVLFHSDCVQT---FGKLPI---D-------VFEM----GIDSLSVSAHKIYGPKG--VGAVY 211 (381)
T ss_pred ehh---HHHHHHHHHHcCCEEEEEChhh---cccccc---C-------cccC----CCCEEEecHHhcCCCCc--EEEEE
Confidence 998 6788889999999999997653 222221 1 1111 35788999999999888 79999
Q ss_pred eCcHHH-HHHHHhC---C---CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 843 LNHPQL-VDAFSSF---P---GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 843 ~~~~~l-i~~l~~~---~---~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++++ + ...+... . ....++.+.+.++..++.. ..+++++.++.+++.++++
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~~l 269 (381)
T PRK02948 212 INPQ-VRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAEN-------ILKNMQEESLRFKELRSYF 269 (381)
T ss_pred EcCC-CCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 8765 3 1111100 0 2456778888888888841 1133444455555555444
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=186.70 Aligned_cols=170 Identities=12% Similarity=0.103 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCC----CcHHHHHHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAG----SNGNYVSAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P----~y~~~~~~~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++..|.+. .+++++| ++++..++.++++|||+|+++.| +|..|...++..|+++..++.+.
T Consensus 45 p~~~~L~~~lA~l~g~~~----~v~~~sG-~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~~~~~~~ 119 (376)
T PRK06460 45 PTVLELTKKIVELENAEM----GVAFSSG-MGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVDASNPGS 119 (376)
T ss_pred ccHHHHHHHHHHHhCCCc----EEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEEEECCCC
Confidence 345556666666667642 4777666 58999889999999999999975 45566677888999999888642
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.+.+++.+++++ ++|++++|+ ||||.+++. ++|.++|+++|++||+|++|+.. +... +
T Consensus 120 -------~~~l~~~~~~~t-klV~l~sp~-NPtG~v~d~---~~I~~la~~~g~~vivDea~~~~-~~~~--------~- 177 (376)
T PRK06460 120 -------DNIIEKAKSKRY-DVVFVENIT-NPLLRVVDI---TELSKVCKENGSILIVDATFSTP-INQK--------P- 177 (376)
T ss_pred -------HHHHHHhcCCCc-eEEEEECCC-CCCCcccCH---HHHHHHHHHcCCEEEEECCcCcc-ccCC--------h-
Confidence 234555555555 599999998 999999994 56788889999999999999632 1110 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCCC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~~ 857 (903)
+. . +..++++|+||.++.. |.|+||++++++ +++.+.+...
T Consensus 178 ---l~-~----~~divv~S~sK~l~G~~~~~~G~~~~~~~-l~~~l~~~~~ 219 (376)
T PRK06460 178 ---LE-L----GADIVVHSASKFLAGHNDVIAGLAAGYGK-LLNVIDQMRR 219 (376)
T ss_pred ---hh-c----CCCEEEeecceeccCCCCceEEEEecCHH-HHHHHHHHHH
Confidence 11 1 3579999999998632 367999999877 9898887654
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.7e-16 Score=181.10 Aligned_cols=216 Identities=13% Similarity=0.107 Sum_probs=161.9
Q ss_pred CCCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCCC-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNMS-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.++..+++++.++ -++...+.+++++.+.+.+++.. .+..+...++++.+++.+|.+ .+++++|+++
T Consensus 51 ~~g~~~~~~~~~~YL~l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~-----~~~~~~sG~~ 125 (407)
T PRK07179 51 TPGPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFE-----SCLLCQSGWA 125 (407)
T ss_pred CCCCcEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCC-----cEEEECCHHH
Confidence 3566788886543 45567788999999988765211 112246677888888888763 3677888899
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+...++.+++.+||.|++..+.|......++..|++++.++. .|++.+++.+++.++++|++++|+ ||||.+
T Consensus 126 An~~~l~~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~lV~v~~v~-n~tG~i 197 (407)
T PRK07179 126 ANVGLLQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRH-------NDVDHLRRQIERHGPGIIVVDSVY-STTGTI 197 (407)
T ss_pred HHHHHHHHhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCC-CCCCcc
Confidence 999999999999999999999999988888889998877653 478999999876444578888897 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
++ +++|.++|+++|+++|+||+|+...++.... +.+..++-. ....+++.|+||.+| .|+||+++
T Consensus 198 ~p---l~~I~~l~~~~~~~livDea~~~g~~g~~g~------g~~~~~~~~---~~vdi~~~S~sK~~g---~~~G~l~~ 262 (407)
T PRK07179 198 AP---LADIVDIAEEFGCVLVVDESHSLGTHGPQGA------GLVAELGLT---SRVHFITASLAKAFA---GRAGIITC 262 (407)
T ss_pred cc---HHHHHHHHHHcCCEEEEECcccccCcCCCCC------chHHhcCCC---CCCCEEEeechHhhh---ccCeEEEe
Confidence 99 7788999999999999999997443432221 112222211 123588999999986 37999999
Q ss_pred CcHHHHHHHHhCC
Q 043334 844 NHPQLVDAFSSFP 856 (903)
Q Consensus 844 ~~~~li~~l~~~~ 856 (903)
+++ +++.+....
T Consensus 263 ~~~-~~~~~~~~~ 274 (407)
T PRK07179 263 PRE-LAEYVPFVS 274 (407)
T ss_pred CHH-HHHHHHHhC
Confidence 876 888776543
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-17 Score=182.89 Aligned_cols=202 Identities=13% Similarity=0.164 Sum_probs=158.0
Q ss_pred CCeEEccCCCCCC---CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFL---PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 615 ~~~IdLs~g~p~~---~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
..+||.+.--..+ .+|+++++++.++.+.|. +.+++++++++++++.+|.+ ++++|+|+++++..++.+
T Consensus 8 ~~~ina~g~~t~~g~s~~~~~v~~a~~~~~~~~~---~~~~~~~~~~~~~a~~~g~~-----~~~~~~g~t~al~~al~a 79 (363)
T TIGR01437 8 KKVINASGKMTILGVSTVSDEVADAQKRGAQNYF---EIKELVNKTGEYIANLLGVE-----DAVIVSSASAGIAQSVAA 79 (363)
T ss_pred ceEEECCcEeecCCCCCCCHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhhCCC-----eEEEEcCHHHHHHHHHHH
Confidence 3455554332222 268899999999876653 57889999999999998853 589999999999999999
Q ss_pred hccCCC---------------eEEEcCCCcHHH----HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 692 CILEGG---------------TLCFPAGSNGNY----VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 692 l~~pGD---------------~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
++++|| +|+++.|.|..| ...+...|++++.++.+ +.+|++.++++++++++.++++
T Consensus 80 l~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~----~~~d~~~le~ai~~~t~ai~~v 155 (363)
T TIGR01437 80 VITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA----NECSAEQLEAAITEKTAAILYI 155 (363)
T ss_pred HhcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC----CCCCHHHHHHhcChhceEEEEE
Confidence 999998 999999888876 46778899999999863 3599999999999888533446
Q ss_pred ECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc
Q 043334 753 SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML 832 (903)
Q Consensus 753 ~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g 832 (903)
++|+ ||+|.+.+ +++|.++|+++|+++|+|++|+. . +..... + +..+++.|++|.+
T Consensus 156 ~~~~-~~~g~~~~---~~~i~~~a~~~gi~vivD~a~~~------~-----~~~~~~-~-------g~D~~~~S~~K~l- 211 (363)
T TIGR01437 156 KSHH-CVQKSMLS---VEDAAQVAQEHNLPLIVDAAAEE------D-----LQKYYR-L-------GADLVIYSGAKAI- 211 (363)
T ss_pred ecCC-CCcCCcCC---HHHHHHHHHHcCCeEEEECCCCC------c-----hHHHHH-c-------CCCEEEEeCCccc-
Confidence 7887 99999999 67789999999999999999951 1 001111 1 1357889999976
Q ss_pred cccceeeEEEeCcHHHHHHHHh
Q 043334 833 TGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 833 ~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+|+|.||++++++ +++.+..
T Consensus 212 -~gp~~G~l~~~~~-~i~~~~~ 231 (363)
T TIGR01437 212 -EGPTSGLVLGKKK-YIEWVKL 231 (363)
T ss_pred -CCCceEEEEEcHH-HHHHHHh
Confidence 5889999998776 7777654
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=184.56 Aligned_cols=269 Identities=14% Similarity=0.113 Sum_probs=187.9
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC---CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN---MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~---~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...||+..| ...++ .++.+.+++.+.+.... ...+..+....+++.+++.+|...+ ++++++|+++++
T Consensus 33 ~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~v~~~~sgsea~ 109 (413)
T cd00610 33 VDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLD---KVFFVNSGTEAV 109 (413)
T ss_pred CCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCC---EEEEcCcHHHHH
Confidence 467789999876 34455 78889999988875432 1223577888999999998886433 899999999999
Q ss_pred HHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcC-------------CEEEEecCCCC----CCcccCHHHHHHHhhcC-
Q 043334 686 NKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLK-------------ANIVNIPTESE----VGFKMTEKTLVTILETV- 745 (903)
Q Consensus 686 ~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G-------------~~vv~v~~~~~----~~f~ld~~~L~~~l~~~- 745 (903)
..++..+. .+++.|++.+++|..+.......+ .+++.+|.+.. ..+..|++.+++.+++.
T Consensus 110 ~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 189 (413)
T cd00610 110 EAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHP 189 (413)
T ss_pred HHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCC
Confidence 99888774 578999999999988655443322 23566665421 12455899999988762
Q ss_pred CCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
.+..+++++|.+|++|.++ +.+++++|.++|+++|+++|+||+|.++...+... ........+ -+
T Consensus 190 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~-------~~~~~~~~~-------d~ 255 (413)
T cd00610 190 EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMF-------AFEHFGVEP-------DI 255 (413)
T ss_pred CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-------hHhhcCCCC-------Ce
Confidence 1236777777768889876 77789999999999999999999998654333321 111111111 24
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHH--HhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAF--SSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l--~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
.||||.++. |+|+||++++++ +++.+ .... .+.+.+.+.|.++.++|+.-.. +.+.+++.++.+.++++.+.
T Consensus 256 ~t~sK~l~~-g~~~g~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~ 331 (413)
T cd00610 256 VTLGKGLGG-GLPLGAVLGREE-IMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRE 331 (413)
T ss_pred EEEcccccC-ccccEEEEEcHH-HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence 589999985 899999999876 88886 3332 2566778888888877742111 23456666777777666554
Q ss_pred H
Q 043334 901 L 901 (903)
Q Consensus 901 l 901 (903)
+
T Consensus 332 ~ 332 (413)
T cd00610 332 L 332 (413)
T ss_pred H
Confidence 3
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-16 Score=183.76 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=147.7
Q ss_pred cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH----HHHHHHHcCCE
Q 043334 644 QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN----YVSAARFLKAN 719 (903)
Q Consensus 644 y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~----~~~~~~~~G~~ 719 (903)
|.+..+..+.++.+++.+++..|.+ + .+++++| ++++..++.++++|||.|+++.|+|+. +...++..|.+
T Consensus 52 ~~y~R~~~p~~~~Le~~lA~l~g~~---~-~v~~~sG-~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~ 126 (405)
T PRK08776 52 YDYTRSGNPTRDLLGEALAELEGGA---G-GVITATG-MGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHFA 126 (405)
T ss_pred CcccCCCChHHHHHHHHHHHHhCCC---c-eEEEcCH-HHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCcE
Confidence 4445555566778888888888853 2 5777676 699999999999999999999999987 44555667888
Q ss_pred EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGW 799 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~ 799 (903)
++.++. .|++.+++.+++++ ++|++++|+ ||||.+.+ +++|+++|+++|++||+|++|..... ..
T Consensus 127 v~~v~~-------~d~~~l~~~i~~~t-klV~l~~P~-NPtG~v~d---l~~I~~la~~~gi~vIvD~a~a~~~~---~~ 191 (405)
T PRK08776 127 LITADL-------TDPRSLADALAQSP-KLVLIETPS-NPLLRITD---LRFVIEAAHKVGALTVVDNTFLSPAL---QK 191 (405)
T ss_pred EEEECC-------CCHHHHHHhcCcCC-eEEEEECCC-CCCCccCC---HHHHHHHHHHcCCEEEEECCCccccc---CC
Confidence 888875 36889999987766 599999998 99999965 88999999999999999999963211 10
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +. + +..+++.|.||.++.+ |...|+++++++++.+.+..... ..+++.+.++++...+
T Consensus 192 ------p-l~-~-------gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl 253 (405)
T PRK08776 192 ------P-LE-F-------GADLVLHSTTKYINGHSDVVGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGL 253 (405)
T ss_pred ------c-cc-c-------cCCEEEecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhh
Confidence 1 11 1 1348999999999766 57889999877668887765443 3346677776666555
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=168.27 Aligned_cols=141 Identities=30% Similarity=0.469 Sum_probs=111.0
Q ss_pred cccCCcccCc--chhH-HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Q 043334 2 MVIPSIFIPE--DWSF-TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA 78 (903)
Q Consensus 2 ~~~p~vfiP~--~w~~-~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g 78 (903)
...||||.|. +... -+.+.+... ++.+|||+|||+|.+++.+++..+..+|+++|+|+.+++.+++|+..|+
T Consensus 5 ~~~~gvFs~~~~d~~t~lL~~~l~~~-----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~ 79 (170)
T PF05175_consen 5 ITHPGVFSPPRLDAGTRLLLDNLPKH-----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNG 79 (170)
T ss_dssp EEETTSTTTTSHHHHHHHHHHHHHHH-----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTT
T ss_pred EECCCeeCCCCCCHHHHHHHHHHhhc-----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC
Confidence 4689999975 3333 445555554 3579999999999999999999888799999999999999999999998
Q ss_pred cccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 79 LDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
++ +++++.+|+.+.... ++||+|++|||+...
T Consensus 80 ~~----------------~v~~~~~d~~~~~~~--~~fD~Iv~NPP~~~~------------------------------ 111 (170)
T PF05175_consen 80 LE----------------NVEVVQSDLFEALPD--GKFDLIVSNPPFHAG------------------------------ 111 (170)
T ss_dssp CT----------------TEEEEESSTTTTCCT--TCEEEEEE---SBTT------------------------------
T ss_pred cc----------------ccccccccccccccc--cceeEEEEccchhcc------------------------------
Confidence 72 499999999887653 389999999996532
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHH
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGV 198 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~ 198 (903)
.+.|...+.++++++.++|||||.+++..........
T Consensus 112 ---~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~ 148 (170)
T PF05175_consen 112 ---GDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYER 148 (170)
T ss_dssp ---SHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHH
T ss_pred ---cccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHH
Confidence 2335556779999999999999999887776655444
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=9e-17 Score=184.50 Aligned_cols=258 Identities=11% Similarity=0.078 Sum_probs=178.0
Q ss_pred CCCCCeEEccCC--CCCCCC-cHHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLPI-PSLVKAAIFESFARQNMS--ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~~-p~~v~~al~~al~~y~~~--~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..| .+.++. ++.+.+++.+.+.++... .-..+...++++++++.+|.+ .++ ++++++|+++++.
T Consensus 40 ~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~-~~~-~v~~~~sgsea~~ 117 (398)
T PRK03244 40 VDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSNLFATEPQIALAERLVELLGAP-EGG-RVFFCNSGAEANE 117 (398)
T ss_pred CCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCC-CCC-EEEEeCchHHHHH
Confidence 467789999876 344555 688999999988764321 111233467888898887743 234 8999999999999
Q ss_pred HHHHHhccCC-CeEEEcCCCcHHHHHHHHH-cCCE------------EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 687 KLVLCCILEG-GTLCFPAGSNGNYVSAARF-LKAN------------IVNIPTESEVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 687 ~ll~~l~~pG-D~Vlv~~P~y~~~~~~~~~-~G~~------------vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
.++.....+| +.|+..+++|..+...+.. .|.. +..+|. .|++.+++.+.++. ++|++
T Consensus 118 ~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~~~~~~-~avii 189 (398)
T PRK03244 118 AAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-------GDVDALAAAVDDDT-AAVFL 189 (398)
T ss_pred HHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-------CCHHHHHHhhcCCe-EEEEE
Confidence 9998777777 4677777888776544432 2221 222221 37899998886544 57888
Q ss_pred ECCCCCCcccCCCHHH-HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTGLLYSNKE-IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG~v~s~ee-l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+.+ |||||.+++.++ +++|.++|++||+++|+||+|.++-..+... . .....-.+ . +.+|||.+
T Consensus 190 ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~---~----~~~~~~~p----D---i~t~sK~l 254 (398)
T PRK03244 190 EPI-QGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWF---A----HQHDGVTP----D---VVTLAKGL 254 (398)
T ss_pred ecc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHH---h----hhhhCCCC----C---EEEEchhh
Confidence 777 499999997655 9999999999999999999998755444321 0 11111112 2 34889999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+ +|+|+||++++++ +++.+.... .+.+.+.+.|.++.++|+.-.. +.+.+++.++++.++++.
T Consensus 255 ~-~G~~ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L 319 (398)
T PRK03244 255 G-GGLPIGACLAFGP-AADLLTPGLHGSTFGGNPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGI 319 (398)
T ss_pred h-CCcccEEEEEcHH-HHhhccCCCCcCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHH
Confidence 8 8999999999987 888886532 2667889999999999852111 234455555555554443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-17 Score=170.66 Aligned_cols=174 Identities=17% Similarity=0.276 Sum_probs=131.3
Q ss_pred CcccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 1 MMVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
+.+.|++|.|...+..+.+.+.... ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.+++|+..+++
T Consensus 9 ~~~~~g~~~p~~ds~~l~~~l~~~~--~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~- 84 (223)
T PRK14967 9 LLRAPGVYRPQEDTQLLADALAAEG--LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGV- 84 (223)
T ss_pred eecCCCCcCCCCcHHHHHHHHHhcc--cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCC-
Confidence 4689999999877776777766543 235689999999999999998875 345999999999999999999987765
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
+++++++|+.+.... ++||+|++||||............ ....|.
T Consensus 85 ----------------~~~~~~~d~~~~~~~--~~fD~Vi~npPy~~~~~~~~~~~~-----------------~~~~~~ 129 (223)
T PRK14967 85 ----------------DVDVRRGDWARAVEF--RPFDVVVSNPPYVPAPPDAPPSRG-----------------PARAWD 129 (223)
T ss_pred ----------------eeEEEECchhhhccC--CCeeEEEECCCCCCCCcccccccC-----------------hhHhhh
Confidence 588999999875433 389999999999876543211100 001112
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+.++...+..+++++.++|||||++++............+.+++.||.....
T Consensus 130 ~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 130 AGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCCCeEEE
Confidence 24566777889999999999999999997766544445567888889876555
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7e-17 Score=169.54 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=144.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++|||+|||+|.+++.+|++.+.++++|||++++|.+.|++|++.|+++ ++++++++|+.++.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~---------------~ri~v~~~Di~~~~ 108 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLE---------------ERIQVIEADIKEFL 108 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcch---------------hceeEehhhHHHhh
Confidence 478999999999999999999988899999999999999999999999883 79999999999886
Q ss_pred cCCC-CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHD-IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~-~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... .+||+|||||||+..+.. .-..... .+++++..- .+..+++.+.+.|||||.+.+
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~-~~~~~~~---------~~Ar~e~~~----------~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSR-LNENPLR---------AIARHEITL----------DLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred hcccccccCEEEeCCCCCCCccc-cCcChhh---------hhhhhhhcC----------CHHHHHHHHHHHccCCCEEEE
Confidence 5443 259999999999976654 0111111 011111111 145889999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecccCCCcccHHHHHHhhh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGLSGDLPICARTAWAYGK 268 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~~~~~p~~~~~~~~~~~ 268 (903)
.+......+. ..++++.+|...++...+-. . ......-+++.-+++..+.
T Consensus 169 V~r~erl~ei-~~~l~~~~~~~k~i~~V~p~-~------~k~A~~vLv~~~k~~~~~l---------------------- 218 (248)
T COG4123 169 VHRPERLAEI-IELLKSYNLEPKRIQFVYPK-I------GKAANRVLVEAIKGGKSGL---------------------- 218 (248)
T ss_pred EecHHHHHHH-HHHHHhcCCCceEEEEecCC-C------CCcceEEEEEEecCCCCCc----------------------
Confidence 9988776666 46888888888776433200 0 1222444566666654333
Q ss_pred cCcceeeeeeeeeccccCchhHHHHHHH
Q 043334 269 AGGRISHALSVYSCQLHQPNQVKKIFKF 296 (903)
Q Consensus 269 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 296 (903)
.+.--|-+++...+++.+++++..-
T Consensus 219 ---~~~ppLii~~e~g~yt~e~~~i~~~ 243 (248)
T COG4123 219 ---KVLPPLIIHDEDGEYTEEVKEIYQG 243 (248)
T ss_pred ---eecCCEEEECCCCCcCHHHHHHHhh
Confidence 3444566777777788888887653
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=178.01 Aligned_cols=199 Identities=13% Similarity=0.119 Sum_probs=150.8
Q ss_pred CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCc
Q 043334 627 LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSN 706 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y 706 (903)
.+.|+.+.+++.+....+. ..+..++.+.+++.+++.+|.+.. + .+++++|+++++..++.+++.+||+|+++.++|
T Consensus 8 ~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~la~~~g~~~~-~-~~~~~~~~t~al~~~~~~~~~~g~~vl~~~~~~ 84 (356)
T cd06451 8 SNVPPRVLKAMNRPMLGHR-SPEFLALMDEILEGLRYVFQTENG-L-TFLLSGSGTGAMEAALSNLLEPGDKVLVGVNGV 84 (356)
T ss_pred cCCCHHHHHHhCCCccCCC-CHHHHHHHHHHHHHHHHHhcCCCC-C-EEEEecCcHHHHHHHHHHhCCCCCEEEEecCCc
Confidence 3567778887765432221 123445577888999999998422 2 578888889999999999999999999999887
Q ss_pred HH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 707 GN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 707 ~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
+. +...++..|++++.+|.++ ++.+|++++++.+++ ++ +++++++|+ ||||.+++ +++|.++|+++|++|
T Consensus 85 ~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~~-~~v~i~~~~-~~~G~~~~---~~~i~~~a~~~~~~l 157 (356)
T cd06451 85 FGDRWADMAERYGADVDVVEKPW--GEAVSPEEIAEALEQHDI-KAVTLTHNE-TSTGVLNP---LEGIGALAKKHDALL 157 (356)
T ss_pred hhHHHHHHHHHhCCCeEEeecCC--CCCCCHHHHHHHHhccCC-CEEEEeccC-CCcccccC---HHHHHHHHHhcCCEE
Confidence 65 5677888999999999864 357999999999986 55 599999997 99999998 667888889999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
|+|++|+ ++.... + .. .. +..+++.|.+|.++.| .++||++.+++ +++.+..
T Consensus 158 i~D~~~~---~g~~~~---~----~~---~~----~~d~~~~s~~K~l~~p-~g~G~l~~~~~-~~~~~~~ 209 (356)
T cd06451 158 IVDAVSS---LGGEPF---R----MD---EW----GVDVAYTGSQKALGAP-PGLGPIAFSER-ALERIKK 209 (356)
T ss_pred EEeeehh---ccCccc---c----cc---cc----CccEEEecCchhccCC-CCcceeEECHH-HHHHHHh
Confidence 9999874 222211 1 11 11 2346678899999854 35899999887 8777763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.8e-17 Score=183.48 Aligned_cols=168 Identities=14% Similarity=0.144 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~~ 727 (903)
+..+++++.+++.+|.+ ++++++|+++++..++.+++++||+|+++.+.|++... .++..|++++.++++
T Consensus 61 p~~~~le~~la~l~g~~-----~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~- 134 (390)
T PRK08133 61 PTVTMFQERLAALEGAE-----ACVATASGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT- 134 (390)
T ss_pred hHHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC-
Confidence 34666888888877753 47888889999999999999999999999998876443 456789999999873
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|++.+++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|++||+|++|....+.. +
T Consensus 135 ------d~~~l~~~i~~~t-klV~ie~p~-NptG~v~d---l~~I~~la~~~gi~livD~t~~~~~~~~---------p- 193 (390)
T PRK08133 135 ------DLDAWRAAVRPNT-KLFFLETPS-NPLTELAD---IAALAEIAHAAGALLVVDNCFCTPALQQ---------P- 193 (390)
T ss_pred ------CHHHHHHhcCcCC-eEEEEECCC-CCCCCcCC---HHHHHHHHHHcCCEEEEECCCcccccCC---------c-
Confidence 6889999998877 599999998 99999987 7899999999999999999985322211 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceee-EEEeCcHHHHHHHHhC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQLVDAFSSF 855 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~li~~l~~~ 855 (903)
+. + +..++++|+||.++.+|+|+| |++++++ +++.+...
T Consensus 194 l~-~-------g~Divv~S~sK~~~g~g~~~GG~vv~~~~-~~~~~~~~ 233 (390)
T PRK08133 194 LK-L-------GADVVIHSATKYLDGQGRVLGGAVVGSKE-LMEEVFGF 233 (390)
T ss_pred hh-h-------CCcEEEeecceeecCCcceEeEEEEcCHH-HHHHHHHH
Confidence 11 1 245889999999999999985 5666665 76666543
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-16 Score=178.06 Aligned_cols=211 Identities=15% Similarity=0.144 Sum_probs=159.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.+++.|+.+... ++|+.+.+++.+.+... .+..|. .+..+.+++.+++.+|.+. ++ +|++|+|+++
T Consensus 15 ~~~~~~yld~~~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~-~~-~v~~~~g~t~ 91 (403)
T TIGR01979 15 NGKPLVYLDSAATS-QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAAS-DE-EIVFTRGTTE 91 (403)
T ss_pred CCCceEEEeCcccc-CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCC-CC-eEEEeCCHHH
Confidence 35678999999877 46778888888776542 222222 1233456667777778762 23 8999999999
Q ss_pred HHHHHHHHh----ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECC
Q 043334 684 LFNKLVLCC----ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGP 755 (903)
Q Consensus 684 al~~ll~~l----~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P 755 (903)
++..++.++ +++||.|+++++.|+. +...++..|++++.++++. ++.+|++.+++.+++++ +++++++|
T Consensus 92 ~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~--~~~~~~~~l~~~i~~~~-~lv~~~~~ 168 (403)
T TIGR01979 92 SINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDD--DGTLDLDDLEKLLTEKT-KLVAITHV 168 (403)
T ss_pred HHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC--CCCCCHHHHHHHhccCC-eEEEEEcc
Confidence 999888775 5789999999998765 3456677899999999873 45689999999998776 58999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc
Q 043334 756 TINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA 835 (903)
Q Consensus 756 ~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G 835 (903)
+ ||||.+++ +++|.++|+++|+++|+|++|+... .+ .+ +... +..+++.|++|.+|.+|
T Consensus 169 ~-~~tG~~~~---~~~i~~~~~~~~~~~ivD~a~~~g~---~~---~~-------~~~~----~~d~~~~s~~K~~gp~G 227 (403)
T TIGR01979 169 S-NVLGTVNP---VEEIAKLAHQVGAKVLVDGAQAVPH---MP---VD-------VQAL----DCDFYVFSGHKMYGPTG 227 (403)
T ss_pred c-ccccccCC---HHHHHHHHHHcCCEEEEEchhhcCc---cc---cC-------cccc----CCCEEEEecccccCCCC
Confidence 8 99999999 7788999999999999999985311 11 00 1111 35789999999988777
Q ss_pred ceeeEEEeCcHHHHHHHH
Q 043334 836 LKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 836 lRiG~lv~~~~~li~~l~ 853 (903)
+||++++++ +++.+.
T Consensus 228 --~g~l~~~~~-~~~~~~ 242 (403)
T TIGR01979 228 --IGVLYGKEE-LLEQMP 242 (403)
T ss_pred --ceEEEEchH-HHhcCC
Confidence 899999876 776653
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=181.05 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=140.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++..|.+ ..++++++++++..++.+++++||+|+++.|+|+.+.. .+...|++++.++.
T Consensus 63 ~p~~~~le~~lA~l~g~~-----~~i~~ssG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi~v~~vd~- 136 (398)
T PRK08249 63 NPTVQAFEEKVRILEGAE-----AATAFSTGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGVDVTLCET- 136 (398)
T ss_pred ChHHHHHHHHHHHHhCCC-----eEEEeCChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCeEEEEcCC-
Confidence 345677888888877753 34444555788988888999999999999999997543 35568999887764
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|+...+. .+
T Consensus 137 ------~d~e~l~~~i~~~t-klV~ie~p~-NPtg~v~d---l~~I~~la~~~gi~livD~t~a~~~~~-~~-------- 196 (398)
T PRK08249 137 ------GDHEQIEAEIAKGC-DLLYLETPT-NPTLKIVD---IERLAAAAKKVGALVVVDNTFATPINQ-NP-------- 196 (398)
T ss_pred ------CCHHHHHHhcCCCC-eEEEEECCC-CCCCccCC---HHHHHHHHHHcCCEEEEECCcCccccC-Cc--------
Confidence 57899999998877 599999998 99999998 777888999999999999999743221 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
.. . +..++++|+||.++.+|.++ ||++++++ +++.+..... ....+...++.+...|
T Consensus 197 -l~-~-------~~Divv~S~sK~l~g~~~~~gG~vv~~~~-l~~~l~~~~~~~g~~~s~~~a~l~l~~l 256 (398)
T PRK08249 197 -LA-L-------GADLVIHSATKFLSGHADALGGVVCGSKE-LMEQVYHYREINGATMDPMSAYLILRGM 256 (398)
T ss_pred -hh-h-------CCCEEeccCceecCCCCCceEEEEECCHH-HHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 11 1 23478899999998888887 56666554 8888876554 4456666666655555
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.2e-16 Score=176.85 Aligned_cols=232 Identities=12% Similarity=0.083 Sum_probs=166.2
Q ss_pred CCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCCC-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNMS-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.++++|+.++ ..+..+|.+++++.+.+.+|+.. .|..+....+++.+++.+|.+ + .+++++| +++.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~---~-~l~~~sG-~~an 118 (402)
T TIGR01821 44 AKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKE---S-ALVFTSG-YVAN 118 (402)
T ss_pred CeeEEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCC---e-EEEECch-HHHH
Confidence 35678776543 45668899999999999887542 355666788889999888843 2 5777777 4455
Q ss_pred HHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCc
Q 043334 686 NKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPT 760 (903)
Q Consensus 686 ~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPT 760 (903)
..++..++. +|+.|+.....|......++..|+++..++. .|.+.+++.++. ...++|++++|+ |||
T Consensus 119 ~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~e~~~-~~~ 190 (402)
T TIGR01821 119 DATLATLAKIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRH-------NDVAHLEKLLQSVDPNRPKIIAFESVY-SMD 190 (402)
T ss_pred HHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCCeEEEECC-------CCHHHHHHHHHhccCCCCeEEEEcCCC-CCC
Confidence 555666654 7787777777787777778888988776653 356777777652 223589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++|+||+|+...|+..... .....+-. .+..++++||||.||++| ||
T Consensus 191 G~~~~---l~~i~~l~~~~~~~livDea~~~G~~g~~g~g------~~~~~~~~---~~~div~~t~sKa~g~~G---G~ 255 (402)
T TIGR01821 191 GDIAP---IEEICDLADKYGALTYLDEVHAVGLYGPRGGG------IAERDGLM---HRIDIIEGTLAKAFGVVG---GY 255 (402)
T ss_pred CCccC---HHHHHHHHHHcCCEEEEeCcccccccCCCCCc------cchhccCC---CCCeEEEEechhhhccCC---ce
Confidence 99998 88889999999999999999974444432210 01111111 124688999999999988 99
Q ss_pred EEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
++++++ +++.+..... ..+.+...+.++.++|+
T Consensus 256 i~~~~~-~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~ 292 (402)
T TIGR01821 256 IAASRK-LIDAIRSYAPGFIFTTSLPPAIAAGATASIR 292 (402)
T ss_pred eecCHH-HHHHHHHhCcCceecCcCCHHHHHHHHHHHH
Confidence 999877 8988876543 34466777888888884
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=180.09 Aligned_cols=187 Identities=13% Similarity=0.139 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++.+|.+. .+ +++|+++++..++ .++.+||+|++++|+|+.. ...++..|++++.++.
T Consensus 51 ~pt~~~le~~la~l~g~~~----~~-~~~sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~vd~- 123 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQ----GF-ACSSGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNVRFVYVNT- 123 (366)
T ss_pred CchHHHHHHHHHHHhCCCc----EE-EEcCHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCceEEEECC-
Confidence 3456778888888888753 24 4555577888765 6788999999999999864 4455678999999875
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++.+++++++++ ++|++++|+ ||||. ..++++|+++|+++|++||+|++|....+. .+
T Consensus 124 ------~d~~~l~~~i~~~t-klv~le~P~-NP~~~---~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-~p-------- 183 (366)
T PRK08247 124 ------ASLKAIEQAITPNT-KAIFIETPT-NPLMQ---ETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-RP-------- 183 (366)
T ss_pred ------CCHHHHHHhcccCc-eEEEEECCC-CCCCc---HHHHHHHHHHHHHcCCEEEEECCCcccccc-Cc--------
Confidence 37899999998776 599999998 99764 577999999999999999999999421111 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
.. .+..|+++|+||.++.+ +++.||++++++++++.+...+. ..+++...|+++...|
T Consensus 184 -~~--------~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l 244 (366)
T PRK08247 184 -LE--------EGADIVIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGM 244 (366)
T ss_pred -hh--------cCCcEEEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhcc
Confidence 11 13679999999999743 56999999985558887776553 3456677787777666
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=7e-16 Score=177.65 Aligned_cols=208 Identities=13% Similarity=0.121 Sum_probs=157.1
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
.+++.|+.+.-. ++|+.+.+++.+.+..+. ...|. .+..+.+++.+++.+|.. +++ +|++|+|+++++
T Consensus 22 ~~~iYld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~-~~~-~v~~t~g~t~~l 98 (406)
T PRK09295 22 LPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINAR-SAE-ELVFVRGTTEGI 98 (406)
T ss_pred CceEEEeCcccc-cCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcC-CCC-eEEEeCCHHHHH
Confidence 357899887755 467788898888775432 11222 233456667777777763 233 899999999999
Q ss_pred HHHHHH----hccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 686 NKLVLC----CILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 686 ~~ll~~----l~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
..++.+ ++++||+|+++++.|++ +...++..|++++.++++. ++.+|++++++++++++ +++++++|+
T Consensus 99 ~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t-~lv~l~~~~- 174 (406)
T PRK09295 99 NLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPALFDERT-RLLAITHVS- 174 (406)
T ss_pred HHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCCCHHHHHHhcCCCc-EEEEEecch-
Confidence 998876 46899999999987764 4566678899999999864 45689999999998776 599999998
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
||||.+++ +++|.++|+++|+++|+|++|+.... + .+ +... +..+++.|++|.+|.+|
T Consensus 175 n~tG~~~~---~~~i~~~~~~~~~~vivD~a~~~g~~---~---~~-------~~~~----~~D~~~~s~~K~~gp~G-- 232 (406)
T PRK09295 175 NVLGTENP---LAEMIALAHQHGAKVLVDGAQAVMHH---P---VD-------VQAL----DCDFYVFSGHKLYGPTG-- 232 (406)
T ss_pred hcccccCC---HHHHHHHHHHcCCEEEEEcccccCcc---c---cC-------chhc----CCCEEEeehhhccCCCC--
Confidence 99999999 77888999999999999999953211 1 11 1111 24688999999888777
Q ss_pred eeEEEeCcHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAF 852 (903)
Q Consensus 838 iG~lv~~~~~li~~l 852 (903)
+||++++++ +++.+
T Consensus 233 ~G~l~~~~~-~~~~~ 246 (406)
T PRK09295 233 IGILYVKEA-LLQEM 246 (406)
T ss_pred cEEEEEchH-hHhhC
Confidence 799999887 76654
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=162.59 Aligned_cols=166 Identities=22% Similarity=0.257 Sum_probs=126.9
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCc
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPI 86 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~ 86 (903)
||+|+..+..+.+.+... ++++|||+|||+|.++..+++.. .+|+|+|+|++|++.+++|+..++.
T Consensus 1 ~~~~~~d~~~l~~~l~~~-----~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~------- 66 (179)
T TIGR00537 1 VYEPAEDSLLLEANLREL-----KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAKLNNV------- 66 (179)
T ss_pred CCCCCccHHHHHHHHHhc-----CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCC-------
Confidence 689998887666666543 34789999999999999999874 3999999999999999999987764
Q ss_pred chhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccH
Q 043334 87 YDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGL 166 (903)
Q Consensus 87 ~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~ 166 (903)
+++++++|+.+... ++||+|++||||+..++..... ..... ++. ++..+.
T Consensus 67 ----------~~~~~~~d~~~~~~---~~fD~Vi~n~p~~~~~~~~~~~-~~~~~-------------~~~---~~~~~~ 116 (179)
T TIGR00537 67 ----------GLDVVMTDLFKGVR---GKFDVILFNPPYLPLEDDLRRG-DWLDV-------------AID---GGKDGR 116 (179)
T ss_pred ----------ceEEEEcccccccC---CcccEEEECCCCCCCcchhccc-chhhh-------------hhh---cCCchH
Confidence 58899999877542 2899999999998664322110 00000 111 134556
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 167 GLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 167 ~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
..+.++++++.++|||||.+++......+...+.+.+++.||....+...
T Consensus 117 ~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 117 KVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred HHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEe
Confidence 67889999999999999999998877765666678999999998877433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-16 Score=178.83 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=158.6
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCC--------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNM--------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~--------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
.+.|+.+.+.. +|+.+++++.+.+..+.. ..+..+..+.+++.+++.+|.+.. +|++++|+++++..+
T Consensus 18 ~~yl~~~~~~~-~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~~~~---~v~~~~~~t~~l~~~ 93 (397)
T TIGR01976 18 RVFFDNPAGTQ-IPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNADPP---EVVFGANATSLTFLL 93 (397)
T ss_pred eEEecCCccCC-CCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCCCCC---eEEEeCCHHHHHHHH
Confidence 68898877664 677889998888765321 112345567888888888887644 699999999998877
Q ss_pred HHHh---ccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 689 VLCC---ILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 689 l~~l---~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
+.++ ++|||+|++++|.|++. ...++..|++++.++++.+ ++.+|++.+++.+++++ +++++++|+ ||||
T Consensus 94 ~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~l~~~i~~~~-~lv~i~~~~-n~tG 170 (397)
T TIGR01976 94 SRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEA-TGELHPDDLASLLSPRT-RLVAVTAAS-NTLG 170 (397)
T ss_pred HHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEecccc-CCCcCHHHHHHhcCCCc-eEEEEeCCC-CCCC
Confidence 7665 68999999999988664 3456778999999998753 46789999999998766 599999998 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.+++ +++|.++|+++|+++|+|++++. +... .. +... +..+++.|++|.+ |.|+||+
T Consensus 171 ~~~~---~~~i~~~~~~~~~~~ivD~a~~~----~~~~--~~-------~~~~----~~d~~~~s~~K~~---g~~~G~l 227 (397)
T TIGR01976 171 SIVD---LAAITELVHAAGALVVVDAVHYA----PHGL--ID-------VQAT----GADFLTCSAYKFF---GPHMGIL 227 (397)
T ss_pred ccCC---HHHHHHHHHHcCCEEEEehhhhc----cccC--CC-------HHHc----CCCEEEEechhhc---CCceEEE
Confidence 9987 88888999999999999998731 2110 11 1111 2456778999987 4579999
Q ss_pred EeCcHHHHHHHHhC
Q 043334 842 VLNHPQLVDAFSSF 855 (903)
Q Consensus 842 v~~~~~li~~l~~~ 855 (903)
+++++ +++.+...
T Consensus 228 ~~~~~-~~~~l~~~ 240 (397)
T TIGR01976 228 WGRPE-LLMNLPPY 240 (397)
T ss_pred EEcHH-HHhhCCCc
Confidence 99887 87776643
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=178.59 Aligned_cols=188 Identities=15% Similarity=0.147 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~ 727 (903)
+.++.+++.+++.+|. . ++++++|+++++..++.++++|||+|++++|+|+.....+ ...|.++..++.
T Consensus 52 pt~~~L~~~lA~l~g~--~---~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-- 124 (386)
T PRK08045 52 PTRDVVQRALAELEGG--A---GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ-- 124 (386)
T ss_pred ccHHHHHHHHHHHhCC--C---eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCeEEEEeCC--
Confidence 4567788888888773 2 5999999999999999999999999999999999644332 224456666542
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|....+. .+
T Consensus 125 -----~d~e~l~~~l~~~t-klV~l~sP~-NPtG~v~d---i~~I~~ia~~~g~~vivDeay~~~~~~-~p--------- 184 (386)
T PRK08045 125 -----GDEQALRAALAEKP-KLVLVESPS-NPLLRVVD---IAKICHLAREAGAVSVVDNTFLSPALQ-NP--------- 184 (386)
T ss_pred -----CCHHHHHHhcccCC-eEEEEECCC-CCCCEecC---HHHHHHHHHHcCCEEEEECCCCccccC-Cc---------
Confidence 57899999998776 599999998 99999998 678888889999999999999643221 11
Q ss_pred hhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+. . +..++++|+||.++ .+|.+.|+++++++++++.+..... ..+.+...++.+...|+
T Consensus 185 l~----~----gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~ 246 (386)
T PRK08045 185 LA----L----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLR 246 (386)
T ss_pred hh----h----CCCEEEeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhc
Confidence 11 1 13489999999996 4667899998866558887765443 45577888888877773
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=174.18 Aligned_cols=213 Identities=13% Similarity=0.088 Sum_probs=161.9
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCC--------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNM--------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~--------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+.|+++--.-.-|+++.+.+++.+....+.. ..+..+..+.+++.+++.+|.+ ++++++|+++++.
T Consensus 18 ~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~-----~~~~~~g~t~a~~ 92 (387)
T PRK09331 18 EEFINLDPIQRGGILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD-----EARVTHGAREGKF 92 (387)
T ss_pred ccccccChhhcCCCCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCCC-----cEEEeCCHHHHHH
Confidence 35666664443446778888888887654321 1122334677777888888863 4778999999999
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC------CCcEEEEECCCCCCc
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV------KKPWVYISGPTINPT 760 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~------~~~~vil~~P~~NPT 760 (903)
.++.+++++||.|+++.++|......++..|++++.++.+.+.++.+|++.+++.+++. ..++|++++|+ |||
T Consensus 93 ~al~~l~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~-~~t 171 (387)
T PRK09331 93 AVMHSLCKKGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVD-GNY 171 (387)
T ss_pred HHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCC-CCC
Confidence 99999999999999999998888778899999999999843346779999999988642 33589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++|+|++|+.-. .+. + .. .. +..+++.|++|+++ .+.|+||
T Consensus 172 G~~~~---l~~I~~la~~~g~~livD~a~~~g~---~~~---~----~~---~~----g~D~~~~s~~K~l~-~~~~~G~ 230 (387)
T PRK09331 172 GNLAD---AKKVAKVAHEYGIPFLLNGAYTVGR---MPV---D----GK---KL----GADFIVGSGHKSMA-ASAPSGV 230 (387)
T ss_pred ccccc---HHHHHHHHHHcCCEEEEECCcccCC---cCC---C----HH---Hc----CCCEEEeeCccccc-CCCCEEE
Confidence 98876 8899999999999999999996311 111 0 11 11 25688999999997 4569999
Q ss_pred EEeCcHHHHHHHHhC
Q 043334 841 LVLNHPQLVDAFSSF 855 (903)
Q Consensus 841 lv~~~~~li~~l~~~ 855 (903)
++++++ +++.+.+.
T Consensus 231 l~~~~~-~i~~~~~~ 244 (387)
T PRK09331 231 LATTEE-YADKVFRT 244 (387)
T ss_pred EEECHH-HHhhcccc
Confidence 999876 88877554
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=178.29 Aligned_cols=185 Identities=16% Similarity=0.143 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~ 727 (903)
+.++.+++.+++.+|. + ++++++|+++++..++.+++++||+|+++.|+|+.+...+ ...|.++..++.
T Consensus 51 p~~~~le~~lA~l~g~----~-~v~~~~gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~~~d~-- 123 (382)
T TIGR02080 51 PTRDLLQQALAELEGG----A-GAVVTNTGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFRVLFVDQ-- 123 (382)
T ss_pred chHHHHHHHHHHHhCC----C-cEEEEcCHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEEEECC--
Confidence 4467777778877772 2 6999999999999999999999999999999999654433 333556655532
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|....+. .+
T Consensus 124 -----~d~~~l~~ai~~~t-klV~l~~p~-NPtG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~-~p--------- 183 (382)
T TIGR02080 124 -----GDEQALRAALAQKP-KLVLIETPS-NPLLRVVD---IAKICHLAKAVGAVVVVDNTFLSPALQ-NP--------- 183 (382)
T ss_pred -----CCHHHHHHhcCcCc-eEEEEECCC-CCCCEecC---HHHHHHHHHHcCCEEEEECCCcccccC-Cc---------
Confidence 37899999998776 599999998 99999998 678888899999999999999643221 11
Q ss_pred hhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKK 871 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~ 871 (903)
+. + +..++++|+||.++ .+|++.|++++.++++++.+..... ..+.+....+.+..
T Consensus 184 l~-~-------gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr 242 (382)
T TIGR02080 184 LA-L-------GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLR 242 (382)
T ss_pred hh-h-------CCCEEEeecceeccCCCCceeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHc
Confidence 11 1 13589999999986 5788999998876668888776544 33455555544433
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=173.92 Aligned_cols=232 Identities=12% Similarity=0.063 Sum_probs=165.1
Q ss_pred CCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.++++|+.++ ..+..++.+.+++.+.+.+++. .+|..+....+++.+++.+|.+ + .+++++|+....
T Consensus 45 ~~~~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~---~-~~~~~sG~~an~ 120 (407)
T PRK09064 45 EREVTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKE---A-ALVFTSGYVSND 120 (407)
T ss_pred CceEEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCC---c-EEEECcHHHHHH
Confidence 46788887554 4567788999999998877643 1355667788889998888842 2 688888865433
Q ss_pred HHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCc
Q 043334 686 NKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPT 760 (903)
Q Consensus 686 ~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPT 760 (903)
.++..++ .+|+.|+.....|......++..|+++..++. .|++.+++.++. ...++|++++|+ |||
T Consensus 121 -~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~v~-s~~ 191 (407)
T PRK09064 121 -ATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRCEKHIFRH-------NDVAHLEELLAAADPDRPKLIAFESVY-SMD 191 (407)
T ss_pred -HHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCCcEEEECC-------CCHHHHHHHHHhccCCCCeEEEEeCCC-CCC
Confidence 3344444 37777777777788777777888888776654 367777777652 222589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++|+||+|+...|+..... ..... +.. .+.+|+++||||.||++| ||
T Consensus 192 G~~~~---l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g------~~~~~-~~~--~~~div~~t~sKa~g~~G---G~ 256 (407)
T PRK09064 192 GDIAP---IAEICDLADKYNALTYLDEVHAVGMYGPRGGG------IAERD-GLM--DRIDIIEGTLAKAFGVMG---GY 256 (407)
T ss_pred ccccC---HHHHHHHHHHcCCEEEEECCCcccccCCCCCC------hHHhc-CCC--CCCeEEEEecchhhhccC---ce
Confidence 99988 88889999999999999999974445443311 11111 110 124789999999999888 99
Q ss_pred EEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
++++++ +++.+..... ..+.+...+.++.+.|+
T Consensus 257 ~~~~~~-~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~ 293 (407)
T PRK09064 257 IAGSAA-LVDAVRSYAPGFIFTTSLPPAIAAAALASIR 293 (407)
T ss_pred EecCHH-HHHHHHHhCccccccCcCCHHHHHHHHHHHH
Confidence 999877 8888876543 23456667777777774
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-16 Score=177.54 Aligned_cols=185 Identities=14% Similarity=0.106 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~~ 728 (903)
..+.+++.+++.+|.+. .|++++ +++++..++.++++|||+|+++.|+|+.. ...++..|++++.++++
T Consensus 66 ~~~~le~~lA~l~g~~~----~i~~~s-G~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 138 (403)
T PRK07503 66 TLALLEQRMASLEGGEA----AVALAS-GMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGVTVRHVDLT-- 138 (403)
T ss_pred hHHHHHHHHHHHhCCCc----EEEEcC-HHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCEEEEEeCCC--
Confidence 45677788888778642 355555 56678888888999999999999988753 33456789999998863
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++.+++.+++++ ++|++++|+ ||||.+.+ +++|.++|+++|++||+|++|+...+ ..+ +
T Consensus 139 -----d~~~l~~~i~~~t-klV~le~p~-NPtG~~~d---i~~I~~la~~~gi~lIvD~a~a~~~~-~~~---------l 198 (403)
T PRK07503 139 -----DPAALKAAISDKT-RMVYFETPA-NPNMRLVD---IAAVAEIAHGAGAKVVVDNTYCTPYL-QRP---------L 198 (403)
T ss_pred -----CHHHHHHhcCccC-cEEEEeCCC-CCCCeeeC---HHHHHHHHHHcCCEEEEECCCccccc-CCc---------h
Confidence 6899999998776 599999998 99999987 78888899999999999999964322 111 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC--CC--CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF--PG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~--~~--~~~~s~~~Q~aa~~~L 873 (903)
. . +..++++|+||.++.+| .|.||++++++ ++++++.. .. ..+++...++.+...|
T Consensus 199 ~----~----g~Di~v~S~tK~l~g~gd~~gG~v~~~~~-l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L 259 (403)
T PRK07503 199 E----L----GADLVVHSATKYLGGHGDITAGLVVGGKA-LADRIRLEGLKDMTGAVMSPFDAFLLMRGL 259 (403)
T ss_pred h----h----CCCEEEccccccccCCCceeEEEEEcCHH-HHHHHHhhhHHhCcCCCCCHHHHHHHHcCc
Confidence 1 1 24689999999999776 77888886665 88887643 22 3455666665555544
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-16 Score=177.03 Aligned_cols=241 Identities=13% Similarity=0.088 Sum_probs=173.4
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
..++.+.+++...... +...+..++++.+++.+++.+|.+.+ ..+++++|+++++..++..++++||+|++++++|+
T Consensus 19 ~~~~~V~~a~~~~~~~-~~~~~~~~~~~~~~~~l~~~~g~~~~--~~vi~~~~gt~a~~~a~~~~~~~Gd~Vlv~~~~~~ 95 (401)
T PLN02409 19 NIPERVLRAMNRPNED-HRSPAFPALTKELLEDVKYIFKTKSG--TPFIFPTTGTGAWESALTNTLSPGDKVVSFRIGQF 95 (401)
T ss_pred CCCHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCcHHHHHHHHHhcCCCCCEEEEeCCCch
Confidence 4577777776554322 23445678899999999999998643 26888889999999999999999999999999887
Q ss_pred HH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc----CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCc
Q 043334 708 NY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILET----VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781 (903)
Q Consensus 708 ~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~----~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i 781 (903)
.. ...++..|++++.++.+.+ ..+|++.+++.+++ ++ ++|+++++. ||||.+++.+++.++++ |+++|+
T Consensus 96 ~~~~~~~~~~~g~~v~~v~~~~~--~~~~~~~l~~~l~~~~~~~~-k~v~~~~~~-~~tG~~~~~~~i~~l~~-~~~~g~ 170 (401)
T PLN02409 96 SLLWIDQMQRLNFDVDVVESPWG--QGADLDILKSKLRQDTNHKI-KAVCVVHNE-TSTGVTNDLAGVRKLLD-CAQHPA 170 (401)
T ss_pred hHHHHHHHHHcCCceEEEECCCC--CCCCHHHHHHHHhhCcCCCc-cEEEEEeec-ccccccCCHHHHHHHHh-hhccCc
Confidence 65 4677889999999998653 33789999999986 44 589999997 99999999777777666 999999
Q ss_pred EEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC----
Q 043334 782 RVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG---- 857 (903)
Q Consensus 782 ~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~---- 857 (903)
++|+|++++. ...+ +. ++.. +..+++.|.+|.+++|. ++||++++++ +++++.....
T Consensus 171 ~~vvD~v~s~---g~~~---------id-~~~~----~~D~~~~s~~K~l~~P~-G~G~l~~~~~-~~~~~~~~~~~~~~ 231 (401)
T PLN02409 171 LLLVDGVSSI---GALD---------FR-MDEW----GVDVALTGSQKALSLPT-GLGIVCASPK-ALEASKTAKSPRVF 231 (401)
T ss_pred EEEEEccccc---CCcc---------cc-cccc----CccEEEEcCccccCcCC-CcceeEECHH-HHHHHhcCCCCCee
Confidence 9999999852 1111 00 1111 24577788899997543 6999999987 7777764321
Q ss_pred ----------------CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 858 ----------------LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 858 ----------------~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
...++...++++..+++.-. +..++.+++.++++++.+
T Consensus 232 ~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~------~~G~e~i~~~~~~l~~~l 285 (401)
T PLN02409 232 FDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIF------EEGLENVIARHARLGEAT 285 (401)
T ss_pred cCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHH
Confidence 22455566777777774111 123445555555555444
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-15 Score=176.38 Aligned_cols=210 Identities=14% Similarity=0.146 Sum_probs=157.8
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCC--CCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNM--SESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~--~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.+.+.|+.+... ++|+.+++++.+.+.++.. ..+. .+..+.+++.+++++|.+. ++ +|++|+|++++
T Consensus 30 ~~~~iyLd~a~~~-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~-~~-~v~~t~g~t~a 106 (424)
T PLN02855 30 GSKLVYLDNAATS-QKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINAST-SR-EIVFTRNATEA 106 (424)
T ss_pred CCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCC-CC-EEEEeCCHHHH
Confidence 4568999998876 5788899998887765422 1111 1223456667777778742 23 89999999999
Q ss_pred HHHHHHH----hccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 685 FNKLVLC----CILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 685 l~~ll~~----l~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+..++.. .+++||+|+++++.|+. +...++..|++++.++++.+ ..+|++.+++.+++++ ++|++++|+
T Consensus 107 l~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~--~~~~~~~l~~~i~~~t-~lv~i~~~~ 183 (424)
T PLN02855 107 INLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPD--EVLDVEQLKELLSEKT-KLVATHHVS 183 (424)
T ss_pred HHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCC--CCcCHHHHHHHhccCc-eEEEEeCcc
Confidence 9998876 36899999999997764 55566788999999998653 3489999999998766 599999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++ +++|.++|+++|++||+|++|+. +..+ +. +... +..+++.|++|.+|.+|
T Consensus 184 -n~tG~~~~---~~~I~~l~~~~g~~vivD~a~~~---g~~~---------~~-~~~~----~~d~~~~s~~K~~gp~G- 241 (424)
T PLN02855 184 -NVLGSILP---VEDIVHWAHAVGAKVLVDACQSV---PHMP---------VD-VQTL----GADFLVASSHKMCGPTG- 241 (424)
T ss_pred -ccccccCC---HHHHHHHHHHcCCEEEEEhhhhc---CCcC---------CC-chhc----CCCEEEeecccccCCCc-
Confidence 99999999 67888899999999999999842 1111 11 1121 24678999999887666
Q ss_pred eeeEEEeCcHHHHHHHH
Q 043334 837 KFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~ 853 (903)
+||++++++ +++.+.
T Consensus 242 -~G~l~~~~~-~~~~~~ 256 (424)
T PLN02855 242 -IGFLWGKSD-LLESMP 256 (424)
T ss_pred -cEEEEEchh-hhhcCC
Confidence 899999887 776654
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-16 Score=180.23 Aligned_cols=205 Identities=15% Similarity=0.136 Sum_probs=153.6
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHH--HHHccCCCC--CchHHHHHHH---HHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFE--SFARQNMSE--SEIDVTPSIQ---QYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~--al~~y~~~~--G~~~lr~ala---~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..+.++.|.+++..|..+.+.+.. .+..|.+.. -.+..++++. +++++.+|.+.+ ++.+|+|+++++..+
T Consensus 69 ~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~e~~~~la~l~g~~~~---~v~~~~g~t~~~~~~ 145 (447)
T PRK00451 69 YPSFLGAGAYDHYIPAVVDHIISRSEFYTAYTPYQPEISQGTLQAIFEYQTMICELTGMDVA---NASMYDGATALAEAA 145 (447)
T ss_pred CcccCcccccCCcCcHHHHHHHhchhHHHhcCCCCCccchHHHHHHHHHHHHHHHHhCCCcc---eEEecCcHHHHHHHH
Confidence 577899999998888777665533 233454411 1233566665 566999998765 799999999999988
Q ss_pred HHHhc-cCCCeEEEcCCCcHHHHHHHHH----cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 689 VLCCI-LEGGTLCFPAGSNGNYVSAARF----LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 689 l~~l~-~pGD~Vlv~~P~y~~~~~~~~~----~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+.++. .+||+|+++++.|+.+...++. .|++++.+++++ + .+|++++++++++++ ++|++++| ||||.+
T Consensus 146 ~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~~~--~-~~d~~~l~~~i~~~t-~~v~l~~p--n~tG~v 219 (447)
T PRK00451 146 LMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPYED--G-VTDLEALEAAVDDDT-AAVVVQYP--NFFGVI 219 (447)
T ss_pred HHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEecCCC--C-CCCHHHHHHhcCCCe-EEEEEECC--CCCCee
Confidence 88874 7999999999999998887654 699999999875 3 699999999998776 58999998 689999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEE--ecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc---cCchhccccccee
Q 043334 764 YSNKEIENILTVCAKYGARVVI--DTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG---GLSLKMLTGALKF 838 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~--DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~---S~SK~~g~~GlRi 838 (903)
.+ +++|.++|+++|+++|+ |.... +.. ...... +..++++ +|||.++++|+|+
T Consensus 220 ~~---l~~I~~~a~~~~~~~iv~~d~~~~-----g~~----------~~~~~~----~~D~~~~s~~k~~~~~~~~Gpg~ 277 (447)
T PRK00451 220 ED---LEEIAEIAHAGGALFIVGVDPVSL-----GLL----------KPPGEY----GADIVVGEGQPLGIPLSFGGPYL 277 (447)
T ss_pred CC---HHHHHHHHHHCCCEEEEEcChHHh-----ccC----------CCcccC----CCCEEEECCCcCCCCCCCCCCCc
Confidence 76 88999999999999988 33221 100 000011 2345554 8999999999999
Q ss_pred eEEEeCcHHHHHHH
Q 043334 839 GFLVLNHPQLVDAF 852 (903)
Q Consensus 839 G~lv~~~~~li~~l 852 (903)
||++++++ +++.+
T Consensus 278 G~l~~~~~-~~~~~ 290 (447)
T PRK00451 278 GFFATRKK-LVRQM 290 (447)
T ss_pred hHHHhhHH-HHhhC
Confidence 99999887 77763
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=177.22 Aligned_cols=185 Identities=10% Similarity=0.087 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~ 728 (903)
..+.+++.+++.+|.+ . .+++++|+ +++..++.+++++||+|+++.|.|+.....+ ...|+++..++.
T Consensus 62 t~~~Le~~lA~l~G~~-~---al~~~sG~-~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~~~~~~--- 133 (386)
T PRK06767 62 TVKLFEERMAVLEGGE-E---ALAFGSGM-AAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMITHSFCDM--- 133 (386)
T ss_pred chHHHHHHHHHHhCCC-c---EEEECCHH-HHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCeEEEEeCC---
Confidence 3577888888888853 2 57777775 5788888889999999999999988765554 334666655543
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|+...+. .+ +
T Consensus 134 ----~d~~~l~~~i~~~t-klV~lesp~-NptG~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~-~p---------l 194 (386)
T PRK06767 134 ----ETEADIENKIRPNT-KLIFVETPI-NPTMKLID---LKQVIRVAKRNGLLVIVDNTFCSPYLQ-RP---------L 194 (386)
T ss_pred ----CCHHHHHHhhCcCc-eEEEEeCCC-CCCceecC---HHHHHHHHHHcCCEEEEECCCcccccC-Cc---------h
Confidence 36899999988776 599999998 99999998 788888899999999999999532221 11 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHh-CCC--CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSS-FPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~-~~~--~~~~s~~~Q~aa~~~L 873 (903)
. . +..+++.|+||.++.+|+|+ ||++++++ +++.+.+ ... ....+...++++...|
T Consensus 195 ~----~----g~Div~~S~sK~l~g~g~~~gG~v~~~~~-~i~~~~~~~~~~~g~~~~~~~a~l~~~~L 254 (386)
T PRK06767 195 E----L----GCDAVVHSATKYIGGHGDVVAGVTICKTR-ALAEKIRPMRKDIGGIMAPFDAWLLLRGL 254 (386)
T ss_pred h----c----CCcEEEecCcceecCCCCceeEEEEeChH-HHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 1 1 23578899999999999996 89999887 6665533 222 2334555555554444
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-16 Score=176.51 Aligned_cols=186 Identities=12% Similarity=0.046 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC----cHHHHHHHHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS----NGNYVSAARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~----y~~~~~~~~~~G~~vv~v~~~~~ 728 (903)
..+.+++.+++.+|.+ +.+++++++.++..++.+++++||+|+++... |..+...++..|++++.++.
T Consensus 71 ~~~~le~~lA~l~g~~-----~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v~~vd~--- 142 (403)
T PRK07810 71 TVSMFEERLRLIEGAE-----ACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVETVFVDG--- 142 (403)
T ss_pred hHHHHHHHHHHHhCCC-----cEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcEEEEECC---
Confidence 3677888888888854 34555555567777788889999999988744 45556677889999999975
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
.|++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+.. + +
T Consensus 143 ----~d~~~l~~ai~~~t-klV~~esp~-Nptg~v~d---l~~I~~la~~~g~~vivD~a~a~~~~~~-~---------~ 203 (403)
T PRK07810 143 ----EDLSQWEEALSVPT-QAVFFETPS-NPMQSLVD---IAAVSELAHAAGAKVVLDNVFATPLLQR-G---------L 203 (403)
T ss_pred ----CCHHHHHHhcCcCc-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCCccccCC-h---------h
Confidence 37899999998877 599999998 99999987 8889999999999999999996433221 1 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. . +..+++.|++|.++.+|+++ ||++++++.+.+.+..... ...++...++.+...|
T Consensus 204 ~----~----gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L 263 (403)
T PRK07810 204 P----L----GADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGL 263 (403)
T ss_pred h----c----CCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 1 1 24689999999999899998 7888887633334443322 3456777777776666
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-15 Score=168.66 Aligned_cols=242 Identities=16% Similarity=0.151 Sum_probs=167.8
Q ss_pred CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCC-C
Q 043334 627 LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAG-S 705 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P-~ 705 (903)
..+++.+.+++..... .......+..+.+++.+++.+|.+.+.. .|++++|+++++..++..++.+||.+++..+ .
T Consensus 8 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~la~~~~~~~~~~-~i~~~~~gt~~l~~~~~~~~~~~~~vi~~~~~~ 84 (355)
T TIGR03301 8 LSTSATVRDAMLVDWC--HWDSEFNDVTDQVRDRLLALAGGDDNHT-CVLLQGSGTFAVEATIGSLVPRDGKLLVLINGA 84 (355)
T ss_pred CCCCHHHHHHhhhhcc--CCCHHHHHHHHHHHHHHHHHhcCCCCCc-EEEEeCCcHHHHHHHHHhccCCCCeEEEECCCc
Confidence 3456777777766321 1222345778889999999999875422 6888999999999999999988888665555 4
Q ss_pred cHH-HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 706 NGN-YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK-KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 706 y~~-~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
|+. +...++..|.+++.++.+. ++.+|++++++.+++++ .+++++++|+ ||||.+.+ +++|+++|+++++++
T Consensus 85 ~~~~~~~~a~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~-~~~G~~~~---~~~i~~l~~~~~~~l 158 (355)
T TIGR03301 85 YGERLAKICEYLGIPHTDLNFSE--YEPPDLNRIEEALAADPDITHVATVHHE-TTTGILNP---LEAIAKVARSHGAVL 158 (355)
T ss_pred hhhHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHHhCCCceEEEEEecC-CcccchhH---HHHHHHHHHHcCCEE
Confidence 554 5677888999999999853 45689999999987543 2367778887 99999987 789999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHhCC------
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSFP------ 856 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~~~------ 856 (903)
|+|++++ |+..+. + +. .. +..++++|++|.+ |++| +||++++++ +++.+....
T Consensus 159 ivD~~~s---~g~~~~---~----~~---~~----~~d~~~~s~~K~l~~~~G--~g~~~~~~~-~~~~~~~~~~~~~~~ 218 (355)
T TIGR03301 159 IVDAMSS---FGAIPI---D----IE---EL----DVDALIASANKCLEGVPG--FGFVIARRD-LLEASAGNARSLYLD 218 (355)
T ss_pred EEEeccc---cCCccc---c----hh---hc----CccEEEecCCcccccCCc--eeEEEECHH-HHHHhhCCCCCceee
Confidence 9998764 222221 1 11 11 2568899999986 5566 699999987 887766211
Q ss_pred -------------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 857 -------------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 857 -------------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
....++...+.++..++..-.. +.++.+.++.++++++++.
T Consensus 219 ~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~-----~g~~~~~~~~~~~~~~~~~ 272 (355)
T TIGR03301 219 LYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELEA-----EGGVPARIARYRRNRELLV 272 (355)
T ss_pred HHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHHHHH
Confidence 1234566777776666631000 0124455556666666553
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=175.03 Aligned_cols=169 Identities=14% Similarity=0.182 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEV 729 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~ 729 (903)
...+++.+++++|.+. .+++++| ++++..++.+++++||+|+++.|+|+.....+ +..|+++..++.
T Consensus 63 ~~~Le~~lA~~~g~~~----~i~~~sG-~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~~~d~---- 133 (388)
T PRK07811 63 RTALEEQLAALEGGAY----GRAFSSG-MAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYTPVDL---- 133 (388)
T ss_pred HHHHHHHHHHHhCCCc----eEEeCCH-HHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCeEEEEeCC----
Confidence 4556666666667653 3666666 79999999999999999999999999654433 235888887765
Q ss_pred CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 730 GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 730 ~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
.|++++++.+++++ ++|++++|+ ||||.+.+ +++|.++|+++|++||+|++|+...+. .+ +.
T Consensus 134 ---~d~e~l~~~i~~~t-klV~ie~p~-NPtg~~~d---l~~I~~la~~~gi~lIvD~a~a~~~~~-~p---------~~ 195 (388)
T PRK07811 134 ---SDLDAVRAAITPRT-KLIWVETPT-NPLLSITD---IAALAELAHDAGAKVVVDNTFASPYLQ-QP---------LA 195 (388)
T ss_pred ---CCHHHHHHhcCcCC-eEEEEECCC-CCcceecC---HHHHHHHHHHcCCEEEEECCCCccccC-Cc---------hh
Confidence 47899999998877 599999998 99998865 888999999999999999999643221 11 11
Q ss_pred hhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~ 857 (903)
. +..++++|+||.++.+| .+.||++++++++.+.+.....
T Consensus 196 ----~----gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~ 236 (388)
T PRK07811 196 ----L----GADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN 236 (388)
T ss_pred ----h----CCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 1 24589999999998755 5679999987667777665443
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=175.34 Aligned_cols=185 Identities=12% Similarity=0.134 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~ 728 (903)
..+.+++.+++++|.+.. ++++ +++.++..++.+++++||+|+++.|.|+.+...+ ...|++++.++.
T Consensus 66 ~~~~Le~~lA~l~G~~~~----~~~~-sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~--- 137 (398)
T PRK07504 66 TVDMFEKRMCALEGAEDA----RATA-SGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG--- 137 (398)
T ss_pred hHHHHHHHHHHHhCCCee----eEec-CHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC---
Confidence 356777888888887643 4455 4456666667778999999999999999765443 467999888852
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
+|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|+...+. .. .
T Consensus 138 ----~d~e~l~~ai~~~t-klV~lesp~-NptG~v~d---l~~I~~la~~~gi~lvvD~a~a~~~~~-~~---------~ 198 (398)
T PRK07504 138 ----LDLDNWEKAVRPNT-KVFFLESPT-NPTLEVID---IAAVAKIANQAGAKLVVDNVFATPLFQ-KP---------L 198 (398)
T ss_pred ----CCHHHHHHhcCcCc-eEEEEECCC-CCCcEecC---HHHHHHHHHHcCCEEEEECCccccccC-Cc---------h
Confidence 68999999998877 599999998 99999998 788888899999999999999643331 11 1
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceee-EEEeCcHHHHH-HHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQLVD-AFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~li~-~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. + +..++++|+||.++++|+|+| +++++++ +++ .+..... ...++....+.+...|
T Consensus 199 ~-~-------gaDivv~S~sK~l~g~g~~~GG~vv~~~~-~i~~~~~~~~~~~g~~~s~~~A~~~l~~L 258 (398)
T PRK07504 199 E-L-------GAHIVVYSATKHIDGQGRCLGGVVLSDKA-WIEEHLQDYFRHTGPSLSPFNAWTLLKGL 258 (398)
T ss_pred h-h-------CCCEEEeeccccccCCccceEEEEEeCcH-HHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 1 1 246899999999999999996 5666665 554 3443221 3334444444444444
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=173.72 Aligned_cols=191 Identities=13% Similarity=0.110 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHH
Q 043334 631 SLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNY 709 (903)
Q Consensus 631 ~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~ 709 (903)
+...+++.+.+... ...|..++++++++++++++|.+ ++++++|+++++.+++.++ ++|||+|+++.|+|+.+
T Consensus 11 ~~~~~~~~~~l~~~-~~~g~~~~~~~~e~~la~~~g~~-----~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~ 84 (375)
T PRK11706 11 GTELDYIQQAMSSG-KLCGDGGFTRRCQQWLEQRFGSA-----KVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVST 84 (375)
T ss_pred HHHHHHHHHHHHcC-CccCCCHHHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHH
Confidence 34466677766543 34566778999999999987762 7999999999998877655 78999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCC
Q 043334 710 VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAF 789 (903)
Q Consensus 710 ~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY 789 (903)
...+...|++++.+++++ ++|.+|++++++++++++ ++|+++ ||||...+ +++|.++|+++|++||+|++|
T Consensus 85 ~~~~~~~G~~~v~~d~d~-~~~~~d~~~le~~i~~~t-k~i~~~----~~~G~~~~---~~~i~~la~~~~i~vIeD~a~ 155 (375)
T PRK11706 85 ANAFVLRGAKIVFVDIRP-DTMNIDETLIEAAITPKT-RAIVPV----HYAGVACE---MDTIMALAKKHNLFVVEDAAQ 155 (375)
T ss_pred HHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcCCCC-eEEEEe----CCCCCccC---HHHHHHHHHHcCCEEEEECcc
Confidence 999999999999999985 468899999999998766 466654 57898866 788899999999999999999
Q ss_pred CCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEeCcHHHHHHHHhC
Q 043334 790 SGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 790 ~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~~~~~li~~l~~~ 855 (903)
+... +++.+. ..+ ..+.+.||. |.++ +|.+.++++.+++ +.++++.+
T Consensus 156 a~g~~~~~~~~---------g~~--------~~~~~~Sf~~~K~l~-~g~gG~~~~~~~~-~~~~~~~~ 205 (375)
T PRK11706 156 GVMSTYKGRAL---------GTI--------GHIGCFSFHETKNYT-AGEGGALLINDPA-LIERAEII 205 (375)
T ss_pred ccccccCCeee---------ecC--------cCEEEEeCCCCcccc-ccCCeEEEECCHH-HHHHHHHH
Confidence 7654 443321 111 122334433 9996 5888777776655 87766544
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=170.97 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=147.5
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
++++.+.+++.... . .......+..+.+++.+++..|.+.+++ .|++++|+++++..++.++..+||.|+++.++|.
T Consensus 15 ~~~~~~~~a~~~~~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~i~~~~~gt~~l~~~~~~l~~~~~~vlv~~~~~~ 91 (368)
T PRK13479 15 TTSRTVREAMLRDW-G-SWDDDFNALTASVRAKLVAIATGEEGYT-CVPLQGSGTFSVEAAIGSLVPRDGKVLVPDNGAY 91 (368)
T ss_pred CCCHHHHHHhCCCC-C-CCChHHHHHHHHHHHHHHHHhCCCCCce-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCCch
Confidence 35566666654432 1 1111244567888888888888754333 6889999999999999999999999999988877
Q ss_pred HH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 708 NY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK-KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 708 ~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
+. ...++..|++++.++++. ++.+|++++++.+++++ .+++++++|+ ||||...+ +++|.++|+++|+++|
T Consensus 92 ~~~~~~~~~~~g~~~~~i~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~-~~tG~~~~---~~~i~~l~~~~~~~li 165 (368)
T PRK13479 92 GARIAQIAEYLGIAHVVLDTGE--DEPPDAAEVEAALAADPRITHVALVHCE-TTTGILNP---LDEIAAVAKRHGKRLI 165 (368)
T ss_pred HHHHHHHHHHcCCcEEEEECCC--CCCCCHHHHHHHHHhCCCCcEEEEEccc-CccccccC---HHHHHHHHHHcCCEEE
Confidence 65 477889999999999864 35689999999887543 2478999998 99999998 6788888999999999
Q ss_pred EecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHhC
Q 043334 785 IDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 785 ~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~~ 855 (903)
+|.++ .|+..+. + +. .. +..+++.|++|.+ |.+| +||++++++ +++.+...
T Consensus 166 vDa~~---~~g~~~~---~----~~---~~----~~d~~v~s~~K~l~g~~G--~G~l~~~~~-~~~~~~~~ 217 (368)
T PRK13479 166 VDAMS---SFGAIPI---D----IA---EL----GIDALISSANKCIEGVPG--FGFVIARRS-ELEACKGN 217 (368)
T ss_pred EEccc---ccCCccc---c----cc---cc----CceEEEecCccccccCCC--ceEEEECHH-HHHHhhcC
Confidence 99554 3333221 1 11 11 2347778999975 6778 699999987 77776653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=174.66 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++.+|.+ .+++++++++++..++.+++++||+|+++.+.|+. +...++..|++++.++++
T Consensus 54 p~~~~le~~la~l~g~~-----~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~~~- 127 (380)
T TIGR01325 54 PTVAAFEERIAALEGAE-----RAVATATGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVDPT- 127 (380)
T ss_pred chHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEECCC-
Confidence 34667777777777762 46778888899999999999999999999998865 344567789999998763
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|....+. .+
T Consensus 128 ------d~~~l~~~i~~~t-klV~le~p~-np~g~~~d---l~~I~~la~~~gi~livD~a~~~~~~~-~p--------- 186 (380)
T TIGR01325 128 ------DLNAWEAAVKPNT-KLVFVETPS-NPLGELVD---IAALAELAHAIGALLVVDNVFATPVLQ-QP--------- 186 (380)
T ss_pred ------CHHHHHHhcCCCc-eEEEEECCC-CCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC-Cc---------
Confidence 6889998887766 599999998 99999987 788899999999999999999643221 11
Q ss_pred hhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~ 856 (903)
+. . +..+++.|+||.++.+|.++ |+++++++ +++.+....
T Consensus 187 l~----~----g~Divv~S~sK~l~g~g~~~gG~vv~~~~-~~~~l~~~~ 227 (380)
T TIGR01325 187 LK----L----GADVVVYSATKHIDGQGRVMGGVIAGSEE-LMAEVAVYL 227 (380)
T ss_pred hh----h----CCCEEEeeccceecCCCCeEEEEEEeCHH-HHHHHHHHH
Confidence 11 1 24688899999999889987 67777766 888777654
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=170.17 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=149.2
Q ss_pred CCcHHHHHHHHHHHHccCC--CCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc---C
Q 043334 628 PIPSLVKAAIFESFARQNM--SESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL---E 695 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~--~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~---p 695 (903)
++|+.+.+++.+.+..+.. ..|. .+..+.+++.+++.+|.+ +++ +|++|+|+++++..++.++.. +
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~-~v~~~~g~t~a~~~~~~~l~~~~~~ 87 (373)
T cd06453 10 QKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAP-SPD-EIIFTRNTTEAINLVAYGLGRANKP 87 (373)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCC-CCC-eEEEeCCHHHHHHHHHHHhhhcCCC
Confidence 3567788888777654322 1221 233455667777778876 123 899999999999999999987 8
Q ss_pred CCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 696 GGTLCFPAGSNGNY----VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 696 GD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
||+|++++++|+.. ...++..|++++.++.+. ++.+|++++++.+.+++ ++|++++|+ ||||.+++ +++
T Consensus 88 g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~-~~v~~~~~~-~~tG~~~~---~~~ 160 (373)
T cd06453 88 GDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDD--DGQLDLEALEKLLTERT-KLVAVTHVS-NVLGTINP---VKE 160 (373)
T ss_pred CCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCC--CCCcCHHHHHHHhcCCc-eEEEEeCcc-cccCCcCC---HHH
Confidence 99999999999874 344567899999999863 56699999999998766 589999998 99999998 678
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|.++|+++|++|++|++|+.... +. + + ... +..+++.|++|.++. .++||++++++ +++.
T Consensus 161 i~~~~~~~~~~li~D~a~~~~~~---~~---~----~---~~~----~~d~~~~s~~K~~~~--~g~g~~~~~~~-~~~~ 220 (373)
T cd06453 161 IGEIAHEAGVPVLVDGAQSAGHM---PV---D----V---QDL----GCDFLAFSGHKMLGP--TGIGVLYGKEE-LLEE 220 (373)
T ss_pred HHHHHHHcCCEEEEEhhhhcCce---ee---e----c---ccc----CCCEEEeccccccCC--CCcEEEEEchH-Hhhc
Confidence 89999999999999999853211 10 0 1 111 235677899999975 56899999877 8777
Q ss_pred HHhC
Q 043334 852 FSSF 855 (903)
Q Consensus 852 l~~~ 855 (903)
+...
T Consensus 221 ~~~~ 224 (373)
T cd06453 221 MPPY 224 (373)
T ss_pred CCCe
Confidence 6643
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=173.08 Aligned_cols=167 Identities=13% Similarity=0.106 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~~ 728 (903)
..+.+++.+++..|.+. .++++++++++..++.+++.+||+|+++.|.|+.. ...+...|++++.++++
T Consensus 60 ~~~~le~~lA~l~g~~~-----av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~~~~vd~~-- 132 (391)
T TIGR01328 60 TVSNLEGRIAFLEGTEA-----AVATSSGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGIQVDFINMA-- 132 (391)
T ss_pred hHHHHHHHHHHHhCCCc-----EEEECCHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCeEEEEECCC--
Confidence 35677888888878642 34455556788888888999999999999988653 34456689999999863
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++.+++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+ +.+ +
T Consensus 133 -----d~e~l~~~i~~~t-klV~le~p~-Np~G~v~d---l~~I~~la~~~gi~livD~a~a~~~~-~~~---------~ 192 (391)
T TIGR01328 133 -----IPEEVKAHIKDNT-KIVYFETPA-NPTMKLID---MERVCRDAHSQGVKVIVDNTFATPML-TNP---------V 192 (391)
T ss_pred -----CHHHHHHhhccCC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCCchhcc-CCc---------h
Confidence 6889999988777 599999998 99999998 77888889999999999999963222 111 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhC
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~ 855 (903)
. . +..++++|+||.+|++|.++ |+++++++ +++.++..
T Consensus 193 ~---~-----g~Divv~S~sK~lgg~g~~~gG~v~~~~~-li~~l~~~ 231 (391)
T TIGR01328 193 A---L-----GVDVVVHSATKYIGGHGDVVAGLICGKAE-LLQQIRMV 231 (391)
T ss_pred h---c-----CCCEEEccccccccCCCCceEEEEEcCHH-HHHHHHHH
Confidence 1 1 24588999999999999886 56666555 88887753
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-16 Score=179.96 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++.+|.+ ..++++++++++..++.+++++||+|+++.+.|+.. ...++..|++++.++.+
T Consensus 57 p~~~~le~~lA~l~g~~-----~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~~v~~~- 130 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGV-----AALAVASGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGIEVRFVDPD- 130 (418)
T ss_pred hhHHHHHHHHHHHhCCC-----eEEEEccHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCcEEEEECCC-
Confidence 34577888888888852 467777777888888888899999999999998654 34467789999999752
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+ .. +
T Consensus 131 ------d~~~l~~~l~~~t-~~V~le~p~-NPtg~v~d---l~~I~~la~~~~i~livD~t~~~~~~-~~--------~- 189 (418)
T TIGR01326 131 ------DPEEFEKAIDENT-KAVFAETIG-NPAINVPD---IEAIAEVAHAHGVPLIVDNTFATPYL-CR--------P- 189 (418)
T ss_pred ------CHHHHHHhcCcCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCchhhc-CC--------c-
Confidence 6899999998776 599999998 99999987 78889999999999999999952110 00 0
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+. .+.+++++|+||.++.+|+|+||++++..
T Consensus 190 ---l~-----~g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 190 ---ID-----HGADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred ---hh-----cCCeEEEECccccccCCccceEEEEEecc
Confidence 11 13689999999999999999999999654
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=174.05 Aligned_cols=212 Identities=11% Similarity=0.027 Sum_probs=148.5
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHH-ccCCC-------CCchHHHHH----HHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFA-RQNMS-------ESEIDVTPS----IQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~~-------~G~~~lr~a----la~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
.+.++|..+++. +|+.+++++...+. .|... .|. +..+. .++.+++.+|.+.. +|++++|+
T Consensus 25 ~~~~~l~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~la~~~g~~~~---~i~~~sgt- 97 (416)
T PRK00011 25 EEHIELIASENF--VSPAVMEAQGSVLTNKYAEGYPGKRYYGGC-EYVDVVEQLAIDRAKELFGAEYA---NVQPHSGS- 97 (416)
T ss_pred hcCeeeecccCc--CCHHHHHHHhchhhcccccCCCCccccccc-hHHHHHHHHHHHHHHHHhCCCce---eeecCCch-
Confidence 467999998887 67889988877653 33211 121 12222 34478888898654 67777775
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHH-----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSA-----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
+++..++.++++|||+|+++.|+|+.+... ....|++++.++++. +++.+|++++++.+++...+++++++++
T Consensus 98 ~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~k~v~~~~~~- 175 (416)
T PRK00011 98 QANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDE-ETGLIDYDEVEKLALEHKPKLIIAGASA- 175 (416)
T ss_pred HHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCc-ccCCcCHHHHHHHHHhcCCCEEEECCCc-
Confidence 578888999999999999999999765321 234467888888864 3477999999999975333577777665
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
|| ...+ +++|.++|+++|+++|+|++|. ++.+.+... .. +. ...++++|+||.+ +|+
T Consensus 176 ~~--~~~~---~~~I~~la~~~~~~livD~a~~~g~~~~g~~~------~~---~~------~~di~~~S~~K~l--~g~ 233 (416)
T PRK00011 176 YS--RPID---FKRFREIADEVGAYLMVDMAHIAGLVAAGVHP------SP---VP------HADVVTTTTHKTL--RGP 233 (416)
T ss_pred CC--CccC---HHHHHHHHHHcCCEEEEECcchhcccccCccC------CC---CC------CCcEEEecCCcCC--CCC
Confidence 65 3344 8899999999999999999974 233322110 00 11 1357899999976 689
Q ss_pred eeeEEEeCcHHHHHHHHhCCC
Q 043334 837 KFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~~ 857 (903)
|.||++++++++++.+.+...
T Consensus 234 ~gg~i~~~~~~~~~~l~~~~~ 254 (416)
T PRK00011 234 RGGLILTNDEELAKKINSAVF 254 (416)
T ss_pred CceEEEeCCHHHHHHHHHHhC
Confidence 999999976448888876543
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=171.09 Aligned_cols=189 Identities=14% Similarity=0.127 Sum_probs=144.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~ 725 (903)
..+..+.+++.+++.+|.+ ..++++++++++..++.+++++||+|+++.++|...... ++..|+++..++.
T Consensus 38 ~~p~~~~le~~la~l~g~~-----~a~~~~sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 112 (369)
T cd00614 38 GNPTVDALEKKLAALEGGE-----AALAFSSGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGIEVTFVDP 112 (369)
T ss_pred CChhHHHHHHHHHHHHCCC-----CEEEEcCHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCeEEEEeCC
Confidence 4556778888888888753 345556667999999999999999999999999876543 4578999988876
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
+ |++++++++++++ ++|++.+|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+. .+
T Consensus 113 ~-------d~~~l~~~i~~~~-~~v~~e~~~-np~g~~~d---l~~i~~la~~~g~~livD~t~~~~~~~-~~------- 172 (369)
T cd00614 113 D-------DPEALEAAIKPET-KLVYVESPT-NPTLKVVD---IEAIAELAHEHGALLVVDNTFATPYLQ-RP------- 172 (369)
T ss_pred C-------CHHHHHHhcCCCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCcchhcC-Ch-------
Confidence 3 4889999988766 599999998 99999998 788999999999999999999643321 11
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+. . +..++++|+||.++.+| .+.||++++++++++.+..... ...++...++++...|
T Consensus 173 --~~----~----g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l 233 (369)
T cd00614 173 --LE----L----GADIVVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGL 233 (369)
T ss_pred --hh----h----CCcEEEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCC
Confidence 11 1 25689999999998766 8899999988448888876543 3445566665555555
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-15 Score=167.09 Aligned_cols=191 Identities=15% Similarity=0.139 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHH
Q 043334 631 SLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNY 709 (903)
Q Consensus 631 ~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~ 709 (903)
+...+++.+.+.+.....| +....+++.+++++|.+ +++.++|+++++.+++.++ +++||+|++++|+|+.+
T Consensus 14 ~~e~~~~~~~l~~~~~~~g--~~~~~le~~la~~~g~~-----~~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~ 86 (379)
T PRK11658 14 DEELAAVKEVLRSGWITTG--PKNQALEQAFCQLTGNQ-----HAIAVSSATAGMHITLMALGIGPGDEVITPSLTWVST 86 (379)
T ss_pred HHHHHHHHHHHHcCCccCC--HhHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHH
Confidence 4557777777765433333 23556666666666763 4677888899999999998 89999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCC
Q 043334 710 VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAF 789 (903)
Q Consensus 710 ~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY 789 (903)
...+...|++++.++++. ++|.+|++.++++++++++ +|+ |+ ||+|...+ +++|.++|+++|++||+|++|
T Consensus 87 ~~~~~~~G~~~v~vd~~~-~~~~~d~~~l~~~i~~~tk-av~---~~-~~~G~~~d---~~~i~~~a~~~gi~vi~D~a~ 157 (379)
T PRK11658 87 LNMIVLLGATPVMVDVDR-DTLMVTPEAIEAAITPRTK-AII---PV-HYAGAPAD---LDAIRAIGERYGIPVIEDAAH 157 (379)
T ss_pred HHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhcccCCe-EEE---Ee-CCCCCcCC---HHHHHHHHHHcCCeEEEECCC
Confidence 999999999999999975 4688999999999987764 554 66 88999876 778899999999999999999
Q ss_pred C-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC
Q 043334 790 S-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 790 ~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~ 855 (903)
+ +..+.+... .. ..+.+.||++...++|.+.|+++.+++++.++++.+
T Consensus 158 a~g~~~~~~~~------------g~------~g~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~ 206 (379)
T PRK11658 158 AVGTYYKGRHI------------GA------RGTAIFSFHAIKNITCAEGGLVVTDDDELADRLRSL 206 (379)
T ss_pred ccCCeECCeec------------CC------CCCEEEeCCCCCcCcccCceEEEECCHHHHHHHHHH
Confidence 7 344544321 11 112567887766778889999999876688777653
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=154.08 Aligned_cols=171 Identities=25% Similarity=0.344 Sum_probs=130.8
Q ss_pred cCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCC
Q 043334 4 IPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKG 83 (903)
Q Consensus 4 ~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~ 83 (903)
.|++|+|+..+..+.+.+.. .++++|||+|||+|.++..+++. +.+|+|+|+|+++++.+++|+..+++.
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~-----~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~--- 71 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD-----KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIR--- 71 (188)
T ss_pred CCcccCcchhHHHHHHhhhc-----cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCC---
Confidence 58999998777766666653 35689999999999999999987 689999999999999999999887752
Q ss_pred CCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccccc
Q 043334 84 QPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQ 163 (903)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~ 163 (903)
..++.++++|+.+..... +||+|++||||....+......... ..+..+.
T Consensus 72 -----------~~~~~~~~~d~~~~~~~~--~~d~vi~n~p~~~~~~~~~~~~~~~-----------------~~~~~~~ 121 (188)
T PRK14968 72 -----------NNGVEVIRSDLFEPFRGD--KFDVILFNPPYLPTEEEEEWDDWLN-----------------YALSGGK 121 (188)
T ss_pred -----------CcceEEEecccccccccc--CceEEEECCCcCCCCchhhhhhhhh-----------------hhhccCc
Confidence 012889999988765433 7999999999986543221110000 0111234
Q ss_pred ccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 164 FGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 164 ~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
++...+..+++++.++|||||.+++..+.......+.+++.+.||++....
T Consensus 122 ~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 122 DGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred ChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeeeee
Confidence 456677899999999999999999988877667777889999999887663
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-15 Score=170.95 Aligned_cols=170 Identities=13% Similarity=0.165 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESE 728 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~ 728 (903)
+..+++++.+++.+|.+ ++++++|+++++..++.+++++||+|+++.|+|+.+...+ ...|++++.+.
T Consensus 53 p~~~~lE~~lA~l~g~~-----~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~v~~~~---- 123 (385)
T PRK08574 53 PTLRPLEEALAKLEGGV-----DALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGVKVVLAY---- 123 (385)
T ss_pred ccHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCcEEEEEC----
Confidence 34566777777777742 4677788889999889999999999999999999987766 44577776653
Q ss_pred CCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 729 VGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
+|++.+++++++ ++ ++|++++|+ ||||.+++ +++|+++|+++|++||+|++|+.-. ...+
T Consensus 124 ----~d~~~l~~~i~~~~t-klV~ie~p~-NPtG~v~d---l~~I~~la~~~gi~livD~t~a~~~-~~~~--------- 184 (385)
T PRK08574 124 ----PSTEDIIEAIKEGRT-KLVFIETMT-NPTLKVID---VPEVAKAAKELGAILVVDNTFATPL-LYRP--------- 184 (385)
T ss_pred ----CCHHHHHHhcCccCc-eEEEEECCC-CCCCEecC---HHHHHHHHHHcCCEEEEECCCCccc-cCCh---------
Confidence 467889999887 66 599999998 99999999 7788999999999999999994211 1111
Q ss_pred hhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~ 857 (903)
+. . +..++++|+||.++.+|-++ |++++.++++.+.+.....
T Consensus 185 l~----~----GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~ 227 (385)
T PRK08574 185 LR----H----GADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR 227 (385)
T ss_pred hh----h----CCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH
Confidence 11 1 35789999999998777765 7677765558777765443
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=168.14 Aligned_cols=187 Identities=13% Similarity=0.098 Sum_probs=140.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~ 727 (903)
+-++.+++.+++..|. + ++++++|+++++..++.+++++||+|+++.|+|+..... ....|.+++.++.
T Consensus 53 pt~~~Le~~lA~leg~----e-~ivvt~gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~v~~vd~-- 125 (388)
T PRK08861 53 PNRGLLEQTLSELESG----K-GAVVTNCGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDFKVQFVDQ-- 125 (388)
T ss_pred chHHHHHHHHHHHhCC----C-eEEEECCHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCeEEEEECC--
Confidence 3467788888887773 2 799999999999999999999999999999999964432 2345788888753
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|....+. .+
T Consensus 126 -----~d~e~l~~~i~~~t-klV~lesP~-NPtG~v~d---l~~I~~la~~~gi~vIvDea~~~~~~~-~p--------- 185 (388)
T PRK08861 126 -----SDAAALDAALAKKP-KLILLETPS-NPLVRVVD---IAELCQKAKAVGALVAVDNTFLTPVLQ-KP--------- 185 (388)
T ss_pred -----CCHHHHHHhcCcCC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCccccccC-CC---------
Confidence 47899999988777 599999998 99999999 667888899999999999999643322 11
Q ss_pred hhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+. + +-.++++|++|.++.+ +.+.|+++++++++.+.+..... ...+++..-+.+..-|
T Consensus 186 l~-~-------GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl 246 (388)
T PRK08861 186 LE-L-------GADFVIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGI 246 (388)
T ss_pred cc-c-------CCCEEEeecceeccCCCcceeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcC
Confidence 11 1 2458999999999754 47889999876657777765443 2333444444333333
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=164.47 Aligned_cols=165 Identities=15% Similarity=0.172 Sum_probs=128.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc--
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF-- 731 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f-- 731 (903)
.+.+++.+++.+|.+. -+++++|+++++..++.++++|||.|+++.|+|.+....+...|++++.++.+.+.+|
T Consensus 61 i~~~~~~~A~~~ga~~----~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~ 136 (294)
T cd00615 61 IKEAQELAARAFGAKH----TFFLVNGTSSSNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPERNPYYGI 136 (294)
T ss_pred HHHHHHHHHHHhCCCC----EEEEcCcHHHHHHHHHHHcCCCCCEEEEeCCchHHHHHHHHHCCCEEEEecCccCcccCc
Confidence 3455566666677542 4667999999999999999999999999999999999999999999999987654433
Q ss_pred --ccCHHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhh
Q 043334 732 --KMTEKTLVTILETV-KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGC 807 (903)
Q Consensus 732 --~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~ 807 (903)
.+|++.+++++++. ..+++++++| ||||.+++ +++|+++|+++|++||+||+|+. +.|.+... ..
T Consensus 137 ~~~i~~~~l~~~l~~~~~~k~v~l~~p--~~~G~~~d---l~~I~~~~~~~g~~livDeA~~~~~~~~~~~~------~~ 205 (294)
T cd00615 137 AGGIPPETFKKALIEHPDAKAAVITNP--TYYGICYN---LRKIVEEAHHRGLPVLVDEAHGAHFRFHPILP------SS 205 (294)
T ss_pred CCCCCHHHHHHHHHhCCCceEEEEECC--CCCCEecC---HHHHHHHHHhcCCeEEEECcchhhhccCcccC------cc
Confidence 68999999998742 3358899988 58999998 88999999999999999999963 34443221 00
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
.. . .+..+++.|++|++ +|+|.|+++
T Consensus 206 ~~---~----~~~div~~S~hK~l--~g~~~~~~l 231 (294)
T cd00615 206 AA---M----AGADIVVQSTHKTL--PALTQGSMI 231 (294)
T ss_pred hh---h----cCCcEEEEchhccc--chHhHHHHH
Confidence 11 1 14789999999975 688876544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=165.21 Aligned_cols=232 Identities=13% Similarity=0.041 Sum_probs=166.4
Q ss_pred CCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.++++|+.++ -.+...+.+++++.+.+.+++. ..|..+....+++.+++.+|.+ . .+++++|+. +.
T Consensus 44 ~~~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~-~---~~~~~SG~~-An 118 (406)
T PRK13393 44 PREVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKE-A---ALLFTSGYV-SN 118 (406)
T ss_pred CccEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCC-c---EEEeCCcHH-HH
Confidence 35678876553 3355688999999999887653 1344556788899999888853 1 588888875 55
Q ss_pred HHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCc
Q 043334 686 NKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPT 760 (903)
Q Consensus 686 ~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPT 760 (903)
..++..+.. +||.|++....|+.....++..|++++.++. .|++.+++.+.. ...++|++++++ ||+
T Consensus 119 ~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~v~~~~v~-~~~ 190 (406)
T PRK13393 119 WAALSTLGSRLPGCVILSDELNHASMIEGIRHSRAEKRIFRH-------NDPADLERKLSDLDPHRPKLVAFESVY-SMD 190 (406)
T ss_pred HHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCCeEEEeCC-------CCHHHHHHHHHhccCCCCEEEEEcCCC-CCC
Confidence 556665655 7888888888888888888888988877764 256677766642 223578899997 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++|+||+|+...|+..... ..... +.. ...+|+++||||.||++| ||
T Consensus 191 G~~~~---l~~i~~l~~~~~~~livDea~~~g~~g~~G~g------~~~~~-~~~--~~~~i~~~tlsKa~g~~G---G~ 255 (406)
T PRK13393 191 GDIAP---IAEICDVAEKHGAMTYLDEVHAVGLYGPRGGG------IAERE-GLA--DRLTIIEGTLAKAFGVMG---GY 255 (406)
T ss_pred CchhC---HHHHHHHHHHcCCEEEEECCccccccCCCCCc------hhhhc-CCC--CCCeEEEEeCchhhcccC---ce
Confidence 99999 88888999999999999999974444433211 11111 111 124688899999999988 99
Q ss_pred EEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
++++++ +++.+..... ..+.+...+.++.++|+
T Consensus 256 ~~~~~~-~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~ 292 (406)
T PRK13393 256 ITGSAA-LCDFIRSFASGFIFTTSLPPAVAAGALASVR 292 (406)
T ss_pred eeCCHH-HHHHHHHhCcCceecCccCHHHHHHHHHHHH
Confidence 998877 8888876543 23455666778888884
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-15 Score=169.27 Aligned_cols=232 Identities=8% Similarity=0.039 Sum_probs=154.9
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+||..| ...++ .++.+.+++.+.+.++.. .....+....+++.+.+..+. + .++++++++++..
T Consensus 37 ~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~~~~sGseA~e 111 (403)
T PRK05093 37 QQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFA--E---RVFFANSGAEANE 111 (403)
T ss_pred CCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCC--C---EEEEeCchHHHHH
Confidence 467789999765 33344 678889999888865321 112233456778888775432 2 6777777777777
Q ss_pred HHHHHhcc-------C-CCeEEEcCCCcHH-HHHHHHHcCC------------EEEEecCCCCCCcccCHHHHHHHhhcC
Q 043334 687 KLVLCCIL-------E-GGTLCFPAGSNGN-YVSAARFLKA------------NIVNIPTESEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 687 ~ll~~l~~-------p-GD~Vlv~~P~y~~-~~~~~~~~G~------------~vv~v~~~~~~~f~ld~~~L~~~l~~~ 745 (903)
.++..... + .+.|+..+-+|-+ +.......|. +++.++. .|++.+++.+.++
T Consensus 112 ~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 184 (403)
T PRK05093 112 AAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPF-------NDLAAVKAVIDDH 184 (403)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCC-------CCHHHHHHHhcCC
Confidence 76664311 1 2456666655544 3323222111 1122211 2789999988755
Q ss_pred CCcEEEEECCCCCCcccCC--CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 746 KKPWVYISGPTINPTGLLY--SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~--s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+ ++|+++ |. ||+|.++ +.+.+++|.++|++||+++|+||+|.++.+.+... + .....-.+ +
T Consensus 185 ~-aaiiie-p~-~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~---~----~~~~~~~p---d---- 247 (403)
T PRK05093 185 T-CAVVVE-PI-QGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLF---A----YMHYGVTP---D---- 247 (403)
T ss_pred e-EEEEEe-cc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccch---h----hhhcCCCC---C----
Confidence 4 355554 87 8998876 89999999999999999999999999877766531 1 11111111 1
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCC-C-CCCCcHHHHHHHHHHHh
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP-G-LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~-~-~~~~s~~~Q~aa~~~L~ 874 (903)
+.||||+++ +|+|+||++++++ +++.+.... . +.+.+++.|.++.++|+
T Consensus 248 i~s~sK~l~-~G~rig~vv~~~~-i~~~l~~~~~~~t~~~~~~~~~aa~a~L~ 298 (403)
T PRK05093 248 ILTSAKALG-GGFPIGAMLTTAE-IASHFKVGTHGSTYGGNPLACAVAEAVFD 298 (403)
T ss_pred EEEeccccc-CCcceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 569999998 9999999999987 888887532 2 66788999999999884
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-15 Score=160.64 Aligned_cols=241 Identities=12% Similarity=0.120 Sum_probs=153.5
Q ss_pred cc-CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH-HHHHHHHHH-h----cc---C-----CCeEEEcCCCcH
Q 043334 643 RQ-NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ-SLFNKLVLC-C----IL---E-----GGTLCFPAGSNG 707 (903)
Q Consensus 643 ~y-~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~-~al~~ll~~-l----~~---p-----GD~Vlv~~P~y~ 707 (903)
+| +...|+++.|+-+++ ..|++.+ +|++...++ ..+.-++.. + .+ | .-+.|+|.|+|.
T Consensus 63 NY~G~l~Gipe~r~l~a~----llgv~~~---~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYD 135 (425)
T PF12897_consen 63 NYPGGLDGIPEARELFAE----LLGVPPE---NVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYD 135 (425)
T ss_dssp SS-S-SS--HHHHHHHHH----HHTS-GG---GEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--H
T ss_pred CCCCccCChHHHHHHHHH----HhCCCHH---HEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCch
Confidence 46 556677776665555 4588766 777775554 444433322 2 11 1 126899999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC-CCCcccCCCHHHHHHHHHH-HHhCCcEEEE
Q 043334 708 NYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT-INPTGLLYSNKEIENILTV-CAKYGARVVI 785 (903)
Q Consensus 708 ~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~-~NPTG~v~s~eel~eI~~i-a~k~~i~VI~ 785 (903)
-+..+++.+|.+.++||+.++ | +|.+.+++++.+.....-+.|.|. +||||.+||.|..++++++ +...+..|+-
T Consensus 136 RHFai~E~~Giemi~VpM~~d-G--PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~W 212 (425)
T PF12897_consen 136 RHFAITEHFGIEMIPVPMTED-G--PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFW 212 (425)
T ss_dssp HHHHHHHHCT-EEEEEEEETT-E--E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEE
T ss_pred HHHHHHHhhCcEEEecCCCCC-C--CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEe
Confidence 999999999999999999874 3 999999999865443457788899 9999999999999999998 4567999999
Q ss_pred ecCCCCCcc-CCCCC-CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCC
Q 043334 786 DTAFSGLEF-NYEGW-GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKP 861 (903)
Q Consensus 786 DeaY~~l~f-~~~~~-s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~ 861 (903)
|++|.-..+ +.... ...+ .+.......+ .++++.+.|.||.. .||-.++|+.++.. .++.+.+..+ ..++
T Consensus 213 DNAY~vHhL~~~~~~~~~~n---il~~~~~AGn-pdrv~~F~STSKIT-f~GaGva~~aaS~~-Nl~~~~~~~~~~tIgp 286 (425)
T PF12897_consen 213 DNAYAVHHLYDEEPRDALLN---ILDACAKAGN-PDRVYVFASTSKIT-FPGAGVAFFAASEA-NLAWIKKHLSVQTIGP 286 (425)
T ss_dssp E-TTTT-BSSSSSS---------HHHHHHHTT--TTSEEEEEESTTTS--TTSS-EEEEE-HH-HHHHHHHHHHHH-S--
T ss_pred ecCceEeeccccccchhhhH---HHHHHHHcCC-CCeEEEEecccccc-cCCcceeeeecCHH-HHHHHHHHhcCceeCc
Confidence 999986555 22221 1112 2332223322 26999999999976 79999999999988 6666666543 8889
Q ss_pred cHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 862 HSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 862 s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.-+.|..-..+|...+ .++..|+++.++.++-|.+.+.
T Consensus 287 dKvNQLRHvrff~d~~---gGv~aHM~kHa~il~PKF~~V~ 324 (425)
T PF12897_consen 287 DKVNQLRHVRFFKDAE---GGVRAHMRKHAAILRPKFEAVL 324 (425)
T ss_dssp -HHHHHHHHHHHHSHH---THHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhcChh---hHHHHHHHHHHHHHhhhHHHHH
Confidence 9999999999995322 2688999999999999988764
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-14 Score=164.40 Aligned_cols=201 Identities=14% Similarity=0.127 Sum_probs=151.7
Q ss_pred EccCCCCCCCCcHHHHHHHHHHHHccC--CCCC-c------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 619 HMDVDQSFLPIPSLVKAAIFESFARQN--MSES-E------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 619 dLs~g~p~~~~p~~v~~al~~al~~y~--~~~G-~------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.|+.+...+++|+.+.+++.+.+..+. +..+ + ....+.+++.+++++|.+.. + +|++|+|+++++..++
T Consensus 2 yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~-~v~~~~g~t~al~~~~ 79 (376)
T TIGR01977 2 YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSS-A-HVVFTNNATTALNIAL 79 (376)
T ss_pred CccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCC-C-eEEEeCCHHHHHHHHH
Confidence 466777777888999999988877653 1111 1 24456677778888887532 2 7999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCC
Q 043334 690 LCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYS 765 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s 765 (903)
.+++++||+|+++.++|+.+.. .++..|++++.++.+. ++.+|++.+++++++++ +++++++|+ ||||.+++
T Consensus 80 ~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~-~~v~~~~~~-n~tG~~~~ 155 (376)
T TIGR01977 80 KGLLKEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDN--EGLISPERIKRAIKTNT-KLIVVSHAS-NVTGTILP 155 (376)
T ss_pred HhccCCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCC--CCCcCHHHHHHhcCCCC-eEEEEECCC-CCccccCC
Confidence 9999999999999999987643 4566799999999864 45689999999998766 589999998 99999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 766 NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 766 ~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
+++|.++|+++|+++|+|++++.... +. . +... +..+++.|..|.++.|. -+|.++..+
T Consensus 156 ---~~~i~~l~~~~~~~livD~a~~~g~~---~~---~-------~~~~----~~D~~~~s~~K~l~~p~-g~g~l~~~~ 214 (376)
T TIGR01977 156 ---IEEIGELAQENGIFFILDAAQTAGVI---PI---D-------MTEL----AIDMLAFTGHKGLLGPQ-GTGGLYIRE 214 (376)
T ss_pred ---HHHHHHHHHHcCCEEEEEhhhccCcc---CC---C-------chhc----CCCEEEecccccccCCC-CceEEEEcC
Confidence 66788999999999999999953211 10 0 0111 35688999999876442 257776655
Q ss_pred H
Q 043334 846 P 846 (903)
Q Consensus 846 ~ 846 (903)
.
T Consensus 215 ~ 215 (376)
T TIGR01977 215 G 215 (376)
T ss_pred C
Confidence 4
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-15 Score=167.86 Aligned_cols=186 Identities=9% Similarity=0.028 Sum_probs=141.5
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEec
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIP 724 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~ 724 (903)
|.|. .+++++.+++..|.+ ++++++|+++++..++.++++|||+|++++|+|+.+.. .++..|++++.++
T Consensus 63 ~~pt-~~~Le~~lA~l~g~~-----~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi~v~~vd 136 (394)
T PRK07050 63 ATPT-SLALAQRLAEIEGGR-----HALLQPSGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGITVRFYD 136 (394)
T ss_pred CCHH-HHHHHHHHHHHhCCC-----eEEEeccHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCeEEEEEC
Confidence 4444 577888888887742 69999999999999999999999999999999998664 4577899999887
Q ss_pred CCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCch
Q 043334 725 TESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDL 804 (903)
Q Consensus 725 ~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~ 804 (903)
.. +.+.+++++++++ ++|++++|+ ||||. ..++++|.++|+++|++||+|++|....+. .
T Consensus 137 ~~-------~~~~l~~~i~~~t-klV~le~p~-Np~~~---~~di~~I~~ia~~~gi~livD~a~a~~~~~-~------- 196 (394)
T PRK07050 137 PL-------IGAGIADLIQPNT-RLIWLEAPG-SVTME---VPDVPAITAAARARGVVTAIDNTYSAGLAF-K------- 196 (394)
T ss_pred CC-------CHHHHHHhcCCCC-eEEEEECCC-CCCcc---HhhHHHHHHHHHHcCCEEEEECCccccccc-C-------
Confidence 42 3467888888877 599999998 99974 567999999999999999999999542211 0
Q ss_pred hhhhhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHH
Q 043334 805 EGCLSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIK 870 (903)
Q Consensus 805 ~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~ 870 (903)
+ +. . +..+++.|+||.++ ..|.+.|++++.+++++++++.... ..+.+....+.+.
T Consensus 197 -~-l~---~-----GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~l 255 (394)
T PRK07050 197 -P-FE---H-----GVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVL 255 (394)
T ss_pred -H-HH---c-----CCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 11 1 24789999999996 3445789999876668888775543 3344444444443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=145.95 Aligned_cols=176 Identities=18% Similarity=0.309 Sum_probs=142.6
Q ss_pred CcccCcchhHHHHHHhhcCCCCCCC--CCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccC
Q 043334 6 SIFIPEDWSFTFYEGLNRHPDSILK--DKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEK 82 (903)
Q Consensus 6 ~vfiP~~w~~~~~~~L~~~~~~~~~--~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~ 82 (903)
.||.|.+.++.+++.|.+-...... ...++|||||+|..+-.+++.. |+....++|+||.+++..++.++.|+.
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--- 93 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--- 93 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC---
Confidence 5899999999999988764433222 5689999999999999998875 456899999999999999999998875
Q ss_pred CCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccc
Q 043334 83 GQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVED 162 (903)
Q Consensus 83 ~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~ 162 (903)
+++.++.|+.+-... ++.|+++.||||...++...-...+. ..|.++
T Consensus 94 --------------~~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~i~~~~i~-----------------~a~aGG 140 (209)
T KOG3191|consen 94 --------------HIDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEEIGDEGIA-----------------SAWAGG 140 (209)
T ss_pred --------------ccceeehhHHhhhcc--CCccEEEECCCcCcCCcccchhHHHH-----------------HHHhcC
Confidence 689999999988766 38999999999998776443211111 123348
Q ss_pred cccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 163 QFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 163 ~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
.+|.+..++++.++-..|.|.|.+++..-.......+-++++..||.....++.+
T Consensus 141 ~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~~~Rk 195 (209)
T KOG3191|consen 141 KDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIAMQRK 195 (209)
T ss_pred cchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEEEEEe
Confidence 8999999999999999999999999987777777766679999999988776555
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-14 Score=161.40 Aligned_cols=221 Identities=15% Similarity=0.091 Sum_probs=156.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH--HHHHHHcCCEEEEecCCC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY--VSAARFLKANIVNIPTES 727 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~--~~~~~~~G~~vv~v~~~~ 727 (903)
..+..+.+++.+++.+|.+.+++ +|++|+|+++++..++.+++.+||.+++..+++.+. ...++..|++++.++++.
T Consensus 33 ~~~~~~~~r~~la~l~~~~~~~~-~i~~t~~~t~al~~~~~~l~~~~~~vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~ 111 (363)
T TIGR02326 33 YNIVVEQIRQQLLALATAEEGYT-SVLLQGSGTFAVEAVIGSAVPKDGKLLVVINGAYGARIVQIAEYLGIPHHVVDTGE 111 (363)
T ss_pred HHHHHHHHHHHHHHHhCCCCCce-EEEEcCCCHHHHHHHHHhcCCCCCeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC
Confidence 34455677888888889864433 799999999999999999999999877766665544 466788999999999864
Q ss_pred CCCcccCHHHHHHHhhcCC-CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 728 EVGFKMTEKTLVTILETVK-KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~-~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
+..+|++.+++++++++ .+++.+++++ ||||..++ +++|.++|+++|+++|+|.+++ ++..+. +
T Consensus 112 --~~~~d~~~l~~~l~~~~~~~~v~~~~~~-~~tG~~~~---i~~I~~l~~~~g~~livD~~~~---~g~~~~---~--- 176 (363)
T TIGR02326 112 --VEPPDVVEVEAILAADPAITHIALVHCE-TTTGILNP---IEAVAKLAHRHGKVTIVDAMSS---FGGIPI---D--- 176 (363)
T ss_pred --CCCCCHHHHHHHHhhCCCccEEEEEeec-CCccccCc---HHHHHHHHHHcCCEEEEEcccc---ccCccc---c---
Confidence 44589999999987543 2467888887 99999998 7899999999999999998764 333321 1
Q ss_pred hhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHhC------------------C--CCCCCcHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSF------------------P--GLSKPHSTV 865 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~~------------------~--~~~~~s~~~ 865 (903)
+. .. +..+++.|++|.+ |.+| +||++++++ .++.+... . ....++.+.
T Consensus 177 -~~---~~----~~D~~~~s~~K~l~~p~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft~~~~~ 245 (363)
T TIGR02326 177 -IA---EL----HIDYLISSANKCIQGVPG--FGFVIARQA-ELAACKGNARSLSLDLYDQWRCMEDNHGKWRFTSPTHV 245 (363)
T ss_pred -hh---hc----CccEEEecCccccccCCc--ceEEEECHH-HHHHhhcCCCceeecHHHHHHHHhccCCCCCCCCcHHH
Confidence 11 11 2458889999987 4556 799999887 66654321 0 122456777
Q ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 866 RYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 866 Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+..+++..-.. ...+++.++.++++++++.
T Consensus 246 ~~al~~al~~l~~-----~g~~~~~~~~~~~~~~~l~ 277 (363)
T TIGR02326 246 VHAFAQALLELEK-----EGGVAARHQRYQQNQKTLV 277 (363)
T ss_pred HHHHHHHHHHHHH-----hhCHHHHHHHHHHHHHHHH
Confidence 7776666631000 0124445566666666553
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-14 Score=162.82 Aligned_cols=223 Identities=14% Similarity=0.134 Sum_probs=156.0
Q ss_pred CCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeE
Q 043334 627 LPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTL 699 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~V 699 (903)
+...+.++++..+++++|+. .+|.......+++.+++.+|.+ + .+++++|.++.+. ++.+++++||.|
T Consensus 11 l~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e-~---al~~~sG~~a~~~-~i~~l~~~GD~V 85 (392)
T PLN03227 11 TSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTE-S---AILYSDGASTTSS-TVAAFAKRGDLL 85 (392)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCC-c---EEEecCcHHHHHH-HHHHhCCCCCEE
Confidence 44678899999999887643 2455556788888888888875 2 6999999988884 567789999999
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc----------CCCcEEEEECCCCCCcccCCCHHHH
Q 043334 700 CFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET----------VKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 700 lv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~----------~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
+++++.|+.+...+...+++++.++..+. -+++.+.+.+.+ ...++|++.+|. ||+|.+.+ +
T Consensus 86 l~~~~~h~s~~~~~~l~~~~~~~~~~~d~----~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~-~~~G~i~~---l 157 (392)
T PLN03227 86 VVDRGVNEALLVGVSLSRANVRWFRHNDM----KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY-KNTGTLAP---L 157 (392)
T ss_pred EEeccccHHHHHHHHHcCCeEEEeCCCCH----HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc-CCCCcccC---H
Confidence 99999999999888888888888876421 123443333321 123578888887 99999999 7
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|.++|+++|+++|+||+|. +-+.+.... .....+.-.+ ..+..|++.|+||.+| ++.||++++.+ ++
T Consensus 158 ~~i~~l~~~~g~~livDe~~~-~g~~g~~G~-----g~~~~~g~~p-~~~~Div~~slsk~~g---~~gg~v~~~~~-~~ 226 (392)
T PLN03227 158 KELVALKEEFHYRLILDESFS-FGTLGKSGR-----GSLEHAGLKP-MVHAEIVTFSLENAFG---SVGGMTVGSEE-VV 226 (392)
T ss_pred HHHHHHHHHcCCEEEEECccc-ccccCCCCC-----cHHHHcCCCC-CCCceEEEeechhhhh---ccCcEEecCHH-HH
Confidence 789999999999999999996 333232110 0111111111 0245899999999875 55599998877 88
Q ss_pred HHHHhCCC--CCCC--cHHHHHHHHHHH
Q 043334 850 DAFSSFPG--LSKP--HSTVRYAIKKLL 873 (903)
Q Consensus 850 ~~l~~~~~--~~~~--s~~~Q~aa~~~L 873 (903)
+.+..... ..+. ++..+.++..++
T Consensus 227 ~~~~~~~~~~~~~~~~~p~~~~aa~~al 254 (392)
T PLN03227 227 DHQRLSGSGYCFSASAPPFLAKADATAT 254 (392)
T ss_pred HHHHHhCcCccccCCCCHHHHHHHHHHH
Confidence 77764332 2232 355666666555
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.3e-15 Score=169.37 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=128.2
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH---HHHHcCCEEEEecC
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS---AARFLKANIVNIPT 725 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~ 725 (903)
|.| -.+.+++.+++..|... .+++++| ++++..++.++++|||+|+++++.|+.+.. .++..|++++.++.
T Consensus 45 g~p-~~~~lE~~la~leg~~~----~v~~ssG-~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~v~~v~~ 118 (397)
T PRK05939 45 GTP-TTAALEAKITKMEGGVG----TVCFATG-MAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVEVTMVDA 118 (397)
T ss_pred CCH-HHHHHHHHHHHHhCCCe----EEEeCCH-HHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCEEEEECC
Confidence 444 45668888888877653 4777776 788888898999999999999999976543 45678999999986
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCch
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDL 804 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~ 804 (903)
.|++++++++++++ ++|++++|+ ||||.+. ++++|+++|+++|+++|+|++|.. ..++..
T Consensus 119 -------~d~e~l~~~l~~~t-klV~vesp~-NptG~v~---dl~~I~~la~~~gi~livD~t~a~~~~~~~~------- 179 (397)
T PRK05939 119 -------TDVQNVAAAIRPNT-RMVFVETIA-NPGTQVA---DLAGIGALCRERGLLYVVDNTMTSPWLFRPK------- 179 (397)
T ss_pred -------CCHHHHHHhCCCCC-eEEEEECCC-CCCCCHH---hHHHHHHHHHHcCCEEEEECCcccccccCcc-------
Confidence 36899999998877 599999998 9999984 599999999999999999999842 111110
Q ss_pred hhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 805 EGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 805 ~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
. .+..++++|+||.++.+|.++|++++.+
T Consensus 180 --------~----~gaDivv~S~sK~~~g~g~~igg~v~~~ 208 (397)
T PRK05939 180 --------D----VGASLVINSLSKYIAGHGNALGGAVTDT 208 (397)
T ss_pred --------c----cCCEEEEecCeecccCCCCeEEEEEecC
Confidence 0 1368999999999999999999988853
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-14 Score=159.42 Aligned_cols=190 Identities=15% Similarity=0.092 Sum_probs=141.5
Q ss_pred CCcHHHHHHHHHHHHc-cCCCC------Cc--hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc----
Q 043334 628 PIPSLVKAAIFESFAR-QNMSE------SE--IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL---- 694 (903)
Q Consensus 628 ~~p~~v~~al~~al~~-y~~~~------G~--~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~---- 694 (903)
++|+.+++++.+.+.. +..+. +. .+..+.+++.+++.+|.+.+ +|++|+|+++++..++.+++.
T Consensus 9 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---~v~~~~g~t~a~~~~l~~l~~~~~~ 85 (353)
T TIGR03235 9 PIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE---EVIFTSGATESNNLAILGLARAGEQ 85 (353)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4678899998887743 22111 11 13356778888888887644 899999999999988888763
Q ss_pred CC-CeEEEcCCCcHHHHHH---HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 695 EG-GTLCFPAGSNGNYVSA---ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 695 pG-D~Vlv~~P~y~~~~~~---~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+| +.|++....|+.+... ++..|++++.++++. ++.+|++++++.+++++ +++++++|+ ||||.+++ ++
T Consensus 86 ~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~l~~~l~~~~-~lv~~~~~~-n~tG~~~~---~~ 158 (353)
T TIGR03235 86 KGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDE--SGRIDVDELADAIRPDT-LLVSIMHVN-NETGSIQP---IR 158 (353)
T ss_pred CCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhCCCCC-EEEEEEccc-CCceeccC---HH
Confidence 56 7788887777665443 456799999999864 45689999999998766 589999998 99999998 78
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+|.++|+++|+++|+|++++.-. .+. + +... +..+++.|..|.+|.+| +|+++++++
T Consensus 159 ~I~~l~~~~~~~~ivD~a~~~g~---~~~---~-------~~~~----~~D~~~~s~~K~~gp~g--~g~l~~~~~ 215 (353)
T TIGR03235 159 EIAEVLEAHEAFFHVDAAQVVGK---ITV---D-------LSAD----RIDLISCSGHKIYGPKG--IGALVIRKR 215 (353)
T ss_pred HHHHHHHHcCCEEEEEchhhcCC---ccc---c-------cccc----CCCEEEeehhhcCCCCc--eEEEEEccC
Confidence 89999999999999999974211 110 0 1111 24677889999887666 899998876
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-15 Score=164.33 Aligned_cols=194 Identities=14% Similarity=0.161 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc------------
Q 043334 631 SLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL------------ 694 (903)
Q Consensus 631 ~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~------------ 694 (903)
..+.+.+...+.. |....+..++++++++++++.+|.+..++ ++++|+|+++++..++.+++.
T Consensus 13 ~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~-~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~ 91 (345)
T cd06450 13 ALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDA-DGVFTSGGSESNLLALLAARDRARKRLKAGGGR 91 (345)
T ss_pred HHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCC-CEEEeCChhHHHHHHHHHHHHHhhhhhhccccc
Confidence 3444555554432 34455678899999999999999873323 799999999999998888753
Q ss_pred CC--CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCH
Q 043334 695 EG--GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 695 pG--D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~ 766 (903)
+| +.|+++.++|..+...++..|++++.++++++ +.+|+++|++.+++ ++ +++++++|+ ||||.+.+
T Consensus 92 ~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~~~--~~~d~~~l~~~i~~~~~~~~~~-~~v~~~~~~-~~tG~~~~- 166 (345)
T cd06450 92 GIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVDED--GRMDPEALEAAIDEDKAEGLNP-IMVVATAGT-TDTGAIDP- 166 (345)
T ss_pred ccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeCCC--CCcCHHHHHHHHHHHHHCCCCc-EEEEEeccc-CCCCCCCC-
Confidence 33 48899999999999999999999999998753 47999999999976 44 478889998 99999865
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+++|.++|+++|+++++|++|+...+..... ... ..... +...+..|++|.++ ++.++|+++.+
T Consensus 167 --~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~------~~~--~~~~~---~~d~~~~s~~K~l~-~p~g~g~~~~~ 230 (345)
T cd06450 167 --LEEIADLAEKYDLWLHVDAAYGGFLLPFPEP------RHL--DFGIE---RVDSISVDPHKYGL-VPLGCSAVLVR 230 (345)
T ss_pred --HHHHHHHHHHhCCeEEEechhhHHHhhChhh------HHH--hcCcc---ccCEEEEchhHhhC-CCcchHHHHHH
Confidence 8899999999999999999997655432211 000 01111 23456779999664 67788987654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=159.22 Aligned_cols=234 Identities=13% Similarity=0.165 Sum_probs=155.3
Q ss_pred CCCCCeEEccCCCCC-CCCcHHHHHHHHHHHHccC-CC----C--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQSF-LPIPSLVKAAIFESFARQN-MS----E--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~-~~~p~~v~~al~~al~~y~-~~----~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..|...+|+..+.+. +..++.+.+++.+.+.+++ .. . ...+....+++.+++..|. . .++.++|+.+
T Consensus 43 ~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~--~---~~~~~sG~~a 117 (402)
T PRK07505 43 ADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA--S---VLTFTSCSAA 117 (402)
T ss_pred cCCceEEEeecCCccCCCCCHHHHHHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC--C---EEEECChHHH
Confidence 457788999654322 2458889999999887653 11 1 1245677888888888775 3 5778888765
Q ss_pred HHHHHHHHh----ccCCC-eEEEcCCCc-HHHHH--HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECC
Q 043334 684 LFNKLVLCC----ILEGG-TLCFPAGSN-GNYVS--AARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGP 755 (903)
Q Consensus 684 al~~ll~~l----~~pGD-~Vlv~~P~y-~~~~~--~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P 755 (903)
.... +..+ ..+|+ .|++.+..| +.... .....+.+++.+|. .|++.+++++++++ +++++++|
T Consensus 118 ~~~a-i~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~-------~d~~~l~~~~~~~~-~~~vl~~p 188 (402)
T PRK07505 118 HLGI-LPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDH-------NDLDALEDICKTNK-TVAYVADG 188 (402)
T ss_pred HHHH-HHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCC-------CCHHHHHHHHhcCC-CEEEEEec
Confidence 5433 3322 22233 355666544 33221 12224567777775 37889999887665 58999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc-CCCCCCceEEEccCchhcccc
Q 043334 756 TINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS-STNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 756 ~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~-~~~~~~~vI~l~S~SK~~g~~ 834 (903)
+ ||||.+++ +++|.++|+++|+++|+||+|+...|+.... .+. ...++. .+ +++++++||||.|+++
T Consensus 189 ~-~~~G~~~~---~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~----~~~~~~~~~---d~~i~~~s~sK~~~~~ 256 (402)
T PRK07505 189 V-YSMGGIAP---VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYV----RSELDYRLN---ERTIIAASLGKAFGAS 256 (402)
T ss_pred c-cccCCcCC---HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chH----HHHcCCCCC---CCeEEEEechhhhhcc
Confidence 8 99999999 6788888999999999999997555543321 011 112221 22 5899999999999988
Q ss_pred cceeeEEEeCcHHHHHHHHhCCCC----CCCcHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHPQLVDAFSSFPGL----SKPHSTVRYAIKKLLG 874 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~~~~~----~~~s~~~Q~aa~~~L~ 874 (903)
| ||++++++++++.+...... .+++..+..++.+.++
T Consensus 257 G---g~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~ 297 (402)
T PRK07505 257 G---GVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAE 297 (402)
T ss_pred C---eEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHH
Confidence 7 89886554588888775431 2345567777777764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=166.25 Aligned_cols=139 Identities=21% Similarity=0.289 Sum_probs=105.6
Q ss_pred ccCCcccCc--chh-HHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 3 VIPSIFIPE--DWS-FTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 3 ~~p~vfiP~--~w~-~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
..||||... |-. ..|++.+... .+.+|||+|||+|.+++.+++..|..+|+++|+|+.|++.|++|+..|+.
T Consensus 203 ~~~gVFs~~~LD~GtrllL~~lp~~-----~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~ 277 (378)
T PRK15001 203 NHANVFSRTGLDIGARFFMQHLPEN-----LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 277 (378)
T ss_pred ecCCccCCCCcChHHHHHHHhCCcc-----cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCc
Confidence 469999996 433 3334443321 23699999999999999999999999999999999999999999988864
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
+. ..+++++.+|+.+.... .+||+|++||||+.... +..
T Consensus 278 ~~-------------~~~v~~~~~D~l~~~~~--~~fDlIlsNPPfh~~~~---~~~----------------------- 316 (378)
T PRK15001 278 EA-------------LDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHA---LTD----------------------- 316 (378)
T ss_pred cc-------------CceEEEEEccccccCCC--CCEEEEEECcCcccCcc---CCH-----------------------
Confidence 20 13789999998775433 37999999999985322 111
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCC
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRP 194 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~ 194 (903)
....++++++.++|+|||.+++......
T Consensus 317 -------~ia~~l~~~a~~~LkpGG~L~iV~nr~l 344 (378)
T PRK15001 317 -------NVAWEMFHHARRCLKINGELYIVANRHL 344 (378)
T ss_pred -------HHHHHHHHHHHHhcccCCEEEEEEecCc
Confidence 1123789999999999999999875433
|
|
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-14 Score=160.31 Aligned_cols=238 Identities=13% Similarity=0.092 Sum_probs=159.6
Q ss_pred CCcHHHHHHHHHHHHccCC-C--------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc-----
Q 043334 628 PIPSLVKAAIFESFARQNM-S--------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI----- 693 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~-~--------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~----- 693 (903)
++++.+.+++.+.+..+.. . .+.+.++++++++.+. .|.. +++ +|++|+|+++++..++.++.
T Consensus 10 ~~~~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~a~~~~~~~-~~~~-~~~-~i~~t~g~teal~~~~~~~~~~~~~ 86 (382)
T TIGR03403 10 MLDPKVKELMDPFFCDIYGNPNSLHQFGTATHPAIAEALDKLYKG-INAR-DLD-DIIITSCATESNNWVLKGVYFDEIL 86 (382)
T ss_pred CCCHHHHHHHHHHHHhcCcCCccccHHHHHHHHHHHHHHHHHHHH-cCcC-CCC-eEEEeCCHHHHHHHHHHHHHHhhcc
Confidence 3566789988887765221 1 1234566666666543 4442 334 89999999999999888762
Q ss_pred cC-CCeEEEcCCCcHHHHHH---HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 694 LE-GGTLCFPAGSNGNYVSA---ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 694 ~p-GD~Vlv~~P~y~~~~~~---~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
++ ||+|+++.+.|+.+... ++..|++++.+|+++ ++.+|++.+++.+++++ +++++++|+ ||||.+++ +
T Consensus 87 ~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~--~g~~d~~~l~~~i~~~t-~lv~~~~~~-n~tG~~~~---~ 159 (382)
T TIGR03403 87 KGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINE--QGTITAEQVREAITEKT-ALVSVMWAN-NETGMIFP---I 159 (382)
T ss_pred cCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCC--CCCCCHHHHHHhcccCC-eEEEEEccc-CCCccccC---H
Confidence 45 46899998777665544 466899999999874 35689999999998776 589999998 99999999 6
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH-H
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ-L 848 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~-l 848 (903)
++|.++|+++|+++++|++++. ...+. + +... +..+++.|++|.+|.+| +|++...+.. +
T Consensus 160 ~~I~~la~~~g~~~ivD~a~~~---g~~~~---~-------~~~~----~~D~~~~s~~K~~gp~G--~g~l~vr~~~~~ 220 (382)
T TIGR03403 160 KEIGEICKERGVLFHTDAVQAI---GKIPV---D-------VQKA----GVDFLSFSAHKFHGPKG--VGGLYIRKGVEL 220 (382)
T ss_pred HHHHHHHHHcCCEEEEechhhc---CCCcc---C-------cccc----CCCEEEEcchhhCCCCc--eEEEEECCCCCC
Confidence 6888889999999999999752 11110 0 1111 24588899999888788 5888765431 1
Q ss_pred HHHHH---hC--CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 849 VDAFS---SF--PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 849 i~~l~---~~--~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
...+. .. .....++.+.+.++..++.. ..++++..++.+++.++.+
T Consensus 221 ~p~~~g~~~~~~~~~gt~~~~~~~al~~al~~-------~~~~~~~~~~~~~~l~~~l 271 (382)
T TIGR03403 221 TPLFHGGEHMGGRRSGTLNVPYIVAMGEAMRL-------ANEYLDFEKSHVRRLRDRL 271 (382)
T ss_pred CCcccCCCCCCCcccCCcChHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHH
Confidence 01110 01 11445777778777777731 1223444455555555544
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=162.86 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=128.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEV 729 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~ 729 (903)
...+++.+++.++ ++ .+++++|+ +++..++.+++++||+|++++|+|..+...+ +..|++++.++.++.
T Consensus 53 ~~~Le~~lA~l~~----~~-~v~~~sG~-~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~~~- 125 (366)
T PRK07582 53 WRALEAALGELEG----AE-ALVFPSGM-AAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGVTVREAPTAGM- 125 (366)
T ss_pred HHHHHHHHHHHcC----CC-EEEECCHH-HHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeEEEEEECCCCh-
Confidence 3445555555441 12 56666665 6888888889999999999999999887654 457999999987531
Q ss_pred CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 730 GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 730 ~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
+ + .+.+++ ++|++++|+ ||||.+.+ +++|+++|+++|+++|+|++|.. +.+.. + +.
T Consensus 126 -~----~----~~~~~t-~lV~le~p~-NPtg~v~d---i~~I~~~a~~~g~~lvVD~t~~~--~~~~~-------p-~~ 181 (366)
T PRK07582 126 -A----E----AALAGA-DLVLAETPS-NPGLDVCD---LAALAAAAHAAGALLVVDNTTAT--PLGQR-------P-LE 181 (366)
T ss_pred -H----H----HhccCc-eEEEEECCC-CCCCCccC---HHHHHHHHHHcCCEEEEECCCCC--ccccC-------c-hh
Confidence 1 1 222445 589999998 99998876 89999999999999999999952 11111 1 11
Q ss_pred hhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +..++++|+||.++ .+|+|+||++++++++++.+..... ...++....+.+...|
T Consensus 182 -~-------g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l 240 (366)
T PRK07582 182 -L-------GADLVVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSL 240 (366)
T ss_pred -c-------CCcEEEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 1 13478899999984 4679999999876658888876543 3445566666555555
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.5e-14 Score=158.16 Aligned_cols=185 Identities=12% Similarity=0.116 Sum_probs=135.4
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc------cCCCeEEEcCCCcHHHHHHHHHcCCEEEE
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI------LEGGTLCFPAGSNGNYVSAARFLKANIVN 722 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~------~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~ 722 (903)
|..++.+.+++.+++.+|.+.. ++++++|+++++..++.++. ++||+|++++++|..+...++..|++++.
T Consensus 56 ~~~~~~~~~~~~la~~~g~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~~~~~ 132 (373)
T TIGR03812 56 GTKKIEEEVVGSLGNLLHLPDA---YGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGLELRY 132 (373)
T ss_pred cHHHHHHHHHHHHHHHhCCCCC---CeEEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCCeEEE
Confidence 4556668889999999998644 68889999999887776654 47799999999999999999999999999
Q ss_pred ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccC--CCCCC
Q 043334 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN--YEGWG 800 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~--~~~~s 800 (903)
++.+. ++.+|++++++.+++++. .++++.|+ ||||.+.+ +++|.++|+++|+++|+|++|...... .....
T Consensus 133 v~~~~--~~~~d~~~l~~~l~~~~~-~vv~~~~~-~~tG~~~~---~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~ 205 (373)
T TIGR03812 133 APLDE--DYTVDVKDVEDLIDDNTI-GIVGIAGT-TELGQIDD---IEELSKIALENGIYLHVDAAFGGFVIPFLKKGYN 205 (373)
T ss_pred EeeCC--CCCcCHHHHHHHHhhCcE-EEEEECCC-CCCCccCC---HHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCC
Confidence 99863 577999999999987663 56666687 99999977 778888899999999999999644321 00000
Q ss_pred CCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 801 GWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 801 ~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
.. . +. +... .-..+..|..| |++++.|+|+++..++++++.+.
T Consensus 206 ~~---~-~d-~~~~----~~d~~~~s~~K-~~~~~~~~G~~~~~~~~~~~~l~ 248 (373)
T TIGR03812 206 PP---P-FD-FSLP----GVQSITIDPHK-MGLSPIPAGGILFRSKSYLKYLS 248 (373)
T ss_pred CC---C-cc-ccCC----CCCEEEECccc-cCCCcCCceEEEEeCHHHHhhhc
Confidence 00 0 00 0000 11234456779 77788899977654444777764
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-14 Score=160.30 Aligned_cols=200 Identities=12% Similarity=0.061 Sum_probs=148.8
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQN--MSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.+.|+.+... ++|+.+++++...+..+. +..+. .+..+.+++.+++.+|.+.+ +|++|+|+++++..
T Consensus 4 ~~yld~aa~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---~v~~~~g~t~a~~~ 79 (402)
T TIGR02006 4 PIYLDYAATT-PVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR---EIVFTSGATESNNL 79 (402)
T ss_pred cEEeeCCcCC-CCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCCHHHHHHH
Confidence 3667766654 567888998877764321 11111 13455667778888887544 89999999999998
Q ss_pred HHHHhc----cCCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc
Q 043334 688 LVLCCI----LEGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT 760 (903)
Q Consensus 688 ll~~l~----~pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT 760 (903)
++.++. ++||.|+++.++|+.+...+ +..|++++.++++. ++.+|++.+++.+++++ +++++++|+ |||
T Consensus 80 ~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~l~~~~-~lv~v~~~~-n~t 155 (402)
T TIGR02006 80 AIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKS--NGLIDLEELKAAIRDDT-ILVSIMHVN-NEI 155 (402)
T ss_pred HHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCC-EEEEEECCC-cCc
Confidence 876653 68999999999999866554 45699999999864 45689999999998766 589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +++|.++|+++|+++++|++++.- ..+ .+ +... +..+++.|..|.+|.+| +|+
T Consensus 156 G~~~~---~~~I~~l~~~~g~~livD~a~a~g---~~~---~~-------~~~~----~~D~~~~s~~K~~gp~G--~G~ 213 (402)
T TIGR02006 156 GVIQD---IAAIGEICRERKVFFHVDAAQSVG---KIP---IN-------VNEL----KVDLMSISGHKIYGPKG--IGA 213 (402)
T ss_pred eeccc---HHHHHHHHHHcCCEEEEEcchhcC---Ccc---cC-------cccc----CCCEEEEehhhhcCCCc--eEE
Confidence 99987 778899999999999999998521 111 01 1111 24678888889887557 899
Q ss_pred EEeCcH
Q 043334 841 LVLNHP 846 (903)
Q Consensus 841 lv~~~~ 846 (903)
+++.++
T Consensus 214 l~~~~~ 219 (402)
T TIGR02006 214 LYVRRK 219 (402)
T ss_pred EEEccC
Confidence 888764
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-14 Score=161.05 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=148.4
Q ss_pred EEccCCCCCCCCcHHHHHHHHHHHH--c-cCCC-C-----Cc--hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFESFA--R-QNMS-E-----SE--IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~al~--~-y~~~-~-----G~--~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
|.|+.+... ++|+.+.+++.+.+. . +... . +. .+..+.+++.+++.+|.+.+ +|++++|+++++.
T Consensus 5 iyld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~---~v~~~~g~t~al~ 80 (404)
T PRK14012 5 IYLDYSATT-PVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR---EIVFTSGATESDN 80 (404)
T ss_pred EEecCcCCC-CCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC---eEEEeCCHHHHHH
Confidence 566666554 567888888888765 2 2111 1 11 13456677888888887644 7999999999999
Q ss_pred HHHHHhc----cCCCeEEEcCCCcHHHHHHHH---HcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 687 KLVLCCI----LEGGTLCFPAGSNGNYVSAAR---FLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 687 ~ll~~l~----~pGD~Vlv~~P~y~~~~~~~~---~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
.++.++. ++||.|+++.++|+.+...++ ..|++++.++++. ++.+|++.+++++++++ +++++++++ ||
T Consensus 81 ~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~--~g~~d~~~l~~~i~~~t-~lv~~~~~~-n~ 156 (404)
T PRK14012 81 LAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQS--NGIIDLEKLEAAMRDDT-ILVSIMHVN-NE 156 (404)
T ss_pred HHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCC--CCcCCHHHHHHhcCCCC-EEEEEECcC-CC
Confidence 8877664 789999999999988765543 4699999999864 46789999999998877 589999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++|++||+|++++. +..+. + +. .. +..+++.|++|.+| |+ ++|
T Consensus 157 tG~~~~---~~~I~~la~~~g~~vivD~a~~~---g~~~~---~----~~---~~----~~D~~~~s~~K~~g-p~-g~G 214 (404)
T PRK14012 157 IGVIQD---IAAIGEICRERGIIFHVDAAQSV---GKVPI---D----LS---KL----KVDLMSFSAHKIYG-PK-GIG 214 (404)
T ss_pred ccchhh---HHHHHHHHHHcCCEEEEEcchhc---CCccc---C----cc---cC----CCCEEEEehhhccC-CC-ceE
Confidence 999998 78889999999999999999852 11110 1 11 11 24567779999776 44 689
Q ss_pred EEEeCcH
Q 043334 840 FLVLNHP 846 (903)
Q Consensus 840 ~lv~~~~ 846 (903)
+++++++
T Consensus 215 ~l~~~~~ 221 (404)
T PRK14012 215 ALYVRRK 221 (404)
T ss_pred EEEEecC
Confidence 9988865
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=164.25 Aligned_cols=262 Identities=13% Similarity=0.091 Sum_probs=165.7
Q ss_pred cCCCCCeEEccCCCCC--CC-CcHHHHHHHHHHHHccCCCCC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 611 ETPNSGLIHMDVDQSF--LP-IPSLVKAAIFESFARQNMSES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~--~~-~p~~v~~al~~al~~y~~~~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
...|...+|+..|... ++ .++.+.+++.+.+.+... ++ ..+....+++.+.+.+... + +|++++|+++++.
T Consensus 44 d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~-~~~~~~~~~~lae~l~~~~~~~---~-~v~~~~sGseA~e 118 (423)
T TIGR00713 44 DVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTS-YGAPTEAEILLAKEIISRVPSV---E-MVRFVNSGTEATM 118 (423)
T ss_pred eCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc-CCCCCHHHHHHHHHHHHhCCcc---c-EEEEeCCHHHHHH
Confidence 4578889999877644 33 678899999888765321 11 1222334444444433321 3 7999999999999
Q ss_pred HHHHHhc--cCCCeEEEcCCCcHHHHHHHHH---cCCEEEEecCCCC-------CCcc---cCHHHHHHHhhcC--CCcE
Q 043334 687 KLVLCCI--LEGGTLCFPAGSNGNYVSAARF---LKANIVNIPTESE-------VGFK---MTEKTLVTILETV--KKPW 749 (903)
Q Consensus 687 ~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~---~G~~vv~v~~~~~-------~~f~---ld~~~L~~~l~~~--~~~~ 749 (903)
.++.... ...++|+...++|.++...+.. .|......+..+. +.+. .|++++++.++.. +..+
T Consensus 119 ~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aa 198 (423)
T TIGR00713 119 SAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAG 198 (423)
T ss_pred HHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEE
Confidence 8777532 2458999999999886543332 1111111111100 0000 2789999888632 2234
Q ss_pred EEEE-CCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC
Q 043334 750 VYIS-GPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL 827 (903)
Q Consensus 750 vil~-~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~ 827 (903)
|++. .|+ | +|.+.+ .+.+++|.++|++||+++|+||+|.++.++... ......-.| + +.+|
T Consensus 199 vi~ep~~~-~-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~--------~~~~~~~~p---D----i~t~ 261 (423)
T TIGR00713 199 VIVEPVAG-N-MGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGG--------AQEYFGVEP---D----LTTL 261 (423)
T ss_pred EEEeCCCC-C-CCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcch--------hHHHhCCCc---c----hhhh
Confidence 5443 454 7 798888 689999999999999999999999877553221 011112222 2 3479
Q ss_pred chhcccccceeeEEEeCcHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 828 SLKMLTGALKFGFLVLNHPQLVDAFSSFP-----GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 828 SK~~g~~GlRiG~lv~~~~~li~~l~~~~-----~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
||.++ +|+|+||++++++ +++.+.... .+.+.+++.|.++.++|+.-.. + ++.+..++.++.+++.+
T Consensus 262 sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~--~---~~~~~~~~~~~~~~~~l 333 (423)
T TIGR00713 262 GKIIG-GGLPVGAFGGRRE-IMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDE--E---GVYTELDELAKRLAEGL 333 (423)
T ss_pred hhhhc-CCCceeeeeEHHH-HHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhc--c---cHHHHHHHHHHHHHHHH
Confidence 99998 9999999999987 999886421 2667889999999988852111 1 23445555555555443
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=157.34 Aligned_cols=203 Identities=12% Similarity=0.094 Sum_probs=149.9
Q ss_pred CCcHHHHHHHHHHHHcc-CC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc----CCCeE
Q 043334 628 PIPSLVKAAIFESFARQ-NM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL----EGGTL 699 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y-~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~----pGD~V 699 (903)
++.+.+.+++.+.+... +. ..+..++.+.+++++++.+|.+.. ++++++|+++++..++.++.. +||+|
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---~~~~~~ggt~a~~~a~~~~~~~~~~~~~~v 107 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLFPGTAKLEEEAVEMLGELLHLPDA---YGYITSGGTEANIQAVRAARNLAKAEKPNI 107 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCC---CeEEecCcHHHHHHHHHHHHhhccCCCceE
Confidence 45566778877776542 11 124455557888999999997644 688899999999888776654 57899
Q ss_pred EEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC
Q 043334 700 CFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY 779 (903)
Q Consensus 700 lv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~ 779 (903)
++.+++|..+...++..|++++.+|.+. ++.+|++.|++.+++++ +.|+++.++ ||||.+.+ +++|.++|+++
T Consensus 108 l~~~~~h~s~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~vi~~~~~-~~tG~~~~---l~~I~~l~~~~ 180 (371)
T PRK13520 108 VVPESAHFSFDKAADMLGVELRRAPLDD--DYRVDVKAVEDLIDDNT-IGIVGIAGT-TELGQVDP---IPELSKIALEN 180 (371)
T ss_pred EecCcchHHHHHHHHHcCceEEEecCCC--CCcCCHHHHHHHHhhCC-EEEEEEcCC-cCCcccCC---HHHHHHHHHHc
Confidence 9999999999999999999999999863 45689999999998766 477788888 99999988 88888899999
Q ss_pred CcEEEEecCCCCCcc--CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 780 GARVVIDTAFSGLEF--NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 780 ~i~VI~DeaY~~l~f--~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
|+++++|++|..+.. ..... .+. +... +...+..|..| ++++|.++|+++..++++++.+.
T Consensus 181 g~~livD~a~~~~~~~~~~~~~-~~~-------~~~~----~vd~~~~s~~K-~~~a~~~~G~~~~~~~~~~~~l~ 243 (371)
T PRK13520 181 GIFLHVDAAFGGFVIPFLDDPP-NFD-------FSLP----GVDSITIDPHK-MGLAPIPAGGILFRDESYLDALA 243 (371)
T ss_pred CCCEEEEecchhHHHHhhcCCC-Ccc-------ccCC----CCceEEECCcc-ccCccCCceEEEEcCHHHHHhhc
Confidence 999999999975432 11110 000 0000 12334456677 66788999988876655777764
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=160.99 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=129.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH-HHH---HHHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN-YVS---AARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~-~~~---~~~~~G~~vv~v~~~ 726 (903)
.+....+++.+++..|.+. .+++++|. +++..++ .+++|||+|++++|+|+. |.. .++..|++++.++.
T Consensus 49 ~p~~~~Le~~lA~l~g~~~----~~~~~sG~-aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~v~~v~~- 121 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHA----GFAFGSGM-AAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGIEHTFVDT- 121 (377)
T ss_pred ChHHHHHHHHHHHHhCCCc----eEEeCCHH-HHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCeEEEEECC-
Confidence 3456778888888888643 48888885 5666554 578999999999999984 432 34557999999874
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++.+++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+. .+
T Consensus 122 ------~d~~~l~~ai~~~t-klV~le~P~-NPtg~~~d---l~~I~~la~~~g~~lvvD~a~~~~~~~-~p-------- 181 (377)
T PRK07671 122 ------SNLEEVEEAIRPNT-KAIYVETPT-NPLLKITD---IKKISTIAKEKGLLTIVDNTFMTPYWQ-SP-------- 181 (377)
T ss_pred ------CCHHHHHHhcCCCC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCCCccccC-Ch--------
Confidence 37899999998877 599999998 99999976 888888899999999999999643222 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~ 857 (903)
+. . +..++++|+||.++.++ .-.|+++++++++++.+...+.
T Consensus 182 -~~----~----g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~ 224 (377)
T PRK07671 182 -IS----L----GADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN 224 (377)
T ss_pred -hh----h----CCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH
Confidence 11 1 24699999999998554 3457788876658888776554
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=163.78 Aligned_cols=265 Identities=10% Similarity=0.022 Sum_probs=171.2
Q ss_pred cCCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCCC----CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH-
Q 043334 611 ETPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNMS----ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ- 682 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~~----~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~- 682 (903)
...|...+|+..|..... .++.+.+++.+.+.++... .+. +...++++.+....+.+..+. .+++++|+.
T Consensus 37 d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~la~~l~~~~~~~~~~~-~~f~~sGsea 114 (425)
T PRK08088 37 DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY-EPYLELCEKMNQKVPGDFAKK-TLLVTTGSEA 114 (425)
T ss_pred eCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCC-HHHHHHHHHHHHhCCCCCCCE-EEEeCCcHHH
Confidence 356778899977654333 4788888998888764321 123 344578888888666544322 456666665
Q ss_pred --HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEE----------------EecCCCCCCcccC--HHHHHHHh
Q 043334 683 --SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIV----------------NIPTESEVGFKMT--EKTLVTIL 742 (903)
Q Consensus 683 --~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv----------------~v~~~~~~~f~ld--~~~L~~~l 742 (903)
.++.++ ..+.+++ .|+...++|-+....+...+.... ++|.+. ++...+ ++.+++.+
T Consensus 115 ~e~Alkla-r~~~~r~-~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~l~~~l 191 (425)
T PRK08088 115 VENAVKIA-RAATKRS-GVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPL-HGVSEDDAIASIERIF 191 (425)
T ss_pred HHHHHHHH-HHHhCCC-eEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccc-cCccHHHHHHHHHHHH
Confidence 455542 3344444 456668888876655544433211 122211 111111 45688777
Q ss_pred hc---CCCcEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 743 ET---VKKPWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 743 ~~---~~~~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
.. ....+.++..|. +||.+...+.+.+++|.++|+++|+++|+||+|.++.+.+... .+...
T Consensus 192 ~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~-------~~~~~------- 257 (425)
T PRK08088 192 KNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLF-------AMEQM------- 257 (425)
T ss_pred HhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchh-------HHhhc-------
Confidence 52 122467777788 8998889999999999999999999999999998765544321 11111
Q ss_pred CceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLES 896 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~ 896 (903)
+.+.-+.||||.++ +|+|+||++++.+ +++.+..... +.+.+.+.|.++..+|+ ... .+++++.+++..+.
T Consensus 258 ~~~pdi~s~sK~l~-~G~rig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~a~~~~l~--~~~---~~~~~~~~~~~~~~ 330 (425)
T PRK08088 258 GVAADLTTFAKSIA-GGFPLAGVTGRAE-VMDAIAPGGLGGTYAGNPIACAAALAVLK--VFE---QENLLQKANALGEK 330 (425)
T ss_pred CCCCCEEEEecccc-CCCcceeeEecHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHH--HHH---hcCHHHHHHHHHHH
Confidence 13445899999998 9999999999987 8888875443 67788999999999995 221 12455555555444
Q ss_pred HHHHH
Q 043334 897 RSKRL 901 (903)
Q Consensus 897 Rr~~l 901 (903)
+++.+
T Consensus 331 ~~~~l 335 (425)
T PRK08088 331 LKDGL 335 (425)
T ss_pred HHHHH
Confidence 44433
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-14 Score=160.31 Aligned_cols=240 Identities=12% Similarity=0.067 Sum_probs=164.5
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|.. .++ .++.+.+++.+.+.++. ......+++.++++++.+..+. + .++++++++++..
T Consensus 26 ~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~--~---~~~~~~sG~~a~~ 100 (377)
T PRK02936 26 NNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAG--D---LVFFCNSGAEANE 100 (377)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhcCCC--C---EEEEeCCcHHHHH
Confidence 46778899977752 223 67889999999887632 1234567888899988876542 2 6888888888888
Q ss_pred HHHHHh-ccCC-CeEEEcCCCcHHHHH-HHHHcCCEEE---EecCCCCCCcc--cCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 687 KLVLCC-ILEG-GTLCFPAGSNGNYVS-AARFLKANIV---NIPTESEVGFK--MTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 687 ~ll~~l-~~pG-D~Vlv~~P~y~~~~~-~~~~~G~~vv---~v~~~~~~~f~--ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
.++... ..+| +.|++.+++|..... .....|.... ..|+..+..+. .|++.+++.+.+++ +++++..+. |
T Consensus 101 ~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~ii~e~i~-~ 178 (377)
T PRK02936 101 AALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMNEEV-AAVMLEVVQ-G 178 (377)
T ss_pred HHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhccCCe-EEEEEeccc-C
Confidence 877743 2244 578888888864322 2222222111 11111110111 27899999887655 477777775 9
Q ss_pred CcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
++|.+ .+.+.+++|.++|++||+++|+||+|.++.+.+... . .....-.+ + +.+|||+++ +|+|
T Consensus 179 ~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~---~----~~~~~~~~---d----i~t~sK~l~-~G~~ 243 (377)
T PRK02936 179 EGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLF---A----YEQFGLDP---D----IVTVAKGLG-NGIP 243 (377)
T ss_pred CCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh---H----HHhhCCCC---c----EEEEccccc-CCCc
Confidence 99877 588999999999999999999999998776655431 1 11121111 2 237999998 8999
Q ss_pred eeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 838 FGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+||++++++ +++.+..... +.+.+++.|.++.++|+
T Consensus 244 ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~a~l~ 281 (377)
T PRK02936 244 VGAMIGKKE-LGTAFGPGSHGSTFGGNPLAMAAAKEVLQ 281 (377)
T ss_pred cEEEEEcHH-HHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999999887 8888865432 56788999999999995
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.61 E-value=6e-14 Score=159.95 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=129.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~ 728 (903)
.++++++.+++.+|.+ +++++++++.++..++. ++++||+|+++++.|+.+... +...|++++.+++.
T Consensus 48 ~~~~le~~la~l~g~~-----~~l~~~sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~~-- 119 (378)
T TIGR01329 48 TRTALESLLAKLDKAD-----RAFAFSSGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDTT-- 119 (378)
T ss_pred HHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCCC--
Confidence 4788999999988862 34444444568887665 789999999999999987653 45689999999862
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++.+++++++++ ++|++++|+ ||||.+.+ +++|+++|+++|+++|+|++|..-. ... + +
T Consensus 120 -----d~~~le~~i~~~t-klv~le~ps-nptg~v~d---l~~I~~la~~~g~~vivD~a~~~~~-~~~--------~-l 179 (378)
T TIGR01329 120 -----DLDKVKAALGPKT-KLVLLESPT-NPLQKIVD---IRKISEMAHAQNALVVVDNTMMSPL-LCN--------P-L 179 (378)
T ss_pred -----CHHHHHHhcCcCc-eEEEEECCC-CCCCeeec---HHHHHHHHHHcCCEEEEECCCcccc-cCC--------h-h
Confidence 6899999998776 599999998 99999987 8999999999999999999984211 111 1 1
Q ss_pred hhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCCC
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~~ 857 (903)
. + +-.++++|++|.++.+ |.+.|+++++++.+.+++.....
T Consensus 180 ~-~-------g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~ 221 (378)
T TIGR01329 180 E-L-------GADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN 221 (378)
T ss_pred h-c-------CCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH
Confidence 1 1 2468999999988653 57899999977657676765443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=153.26 Aligned_cols=234 Identities=12% Similarity=0.154 Sum_probs=185.0
Q ss_pred CCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+.+++||+.++ ..+...+.++++..+++.+|+. ..|..++...+++.+++++|.+.. +++++|-.+.
T Consensus 37 ~~~~~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~a----l~f~SGy~AN 112 (388)
T COG0156 37 DGRKVLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAA----LLFSSGFVAN 112 (388)
T ss_pred CCceeEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcE----EEEcccchhH
Confidence 467789988665 3355678899999999988643 357788889999999999998744 8899998887
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINP 759 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NP 759 (903)
+.. +.+++++||.|+...-.+.+....++..+++++.+.. .|+++|++.+++. .+++|+...-- ..
T Consensus 113 ~~~-i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~H-------nD~~~Le~~l~~~~~~~~~~~~IvtegVf-SM 183 (388)
T COG0156 113 LGL-LSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKH-------NDLDHLEALLEEARENGARRKLIVTEGVF-SM 183 (388)
T ss_pred HHH-HHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecC-------CCHHHHHHHHHhhhccCCCceEEEEeccc-cC
Confidence 774 7899999999999999999999999999999999976 3689999988762 13577777777 88
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
.|.+.+ +.+|++++++|+.++++||+|+--.+++... .....+.-.+ .+..|.++||||.+|..| |
T Consensus 184 dGdiAp---L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr------G~~e~~g~~~--~~vdi~~gTlsKAlGs~G---g 249 (388)
T COG0156 184 DGDIAP---LPELVELAEKYGALLYVDEAHAVGVLGPNGR------GLAEHFGLEP--EEVDIIVGTLGKALGSSG---G 249 (388)
T ss_pred CCCcCC---HHHHHHHHHHhCcEEEEEccccccccCCCCc------cHHHHhCCCC--ccceEEEEEchhhhcccC---c
Confidence 999988 9999999999999999999999888876553 2233332211 246899999999999988 9
Q ss_pred EEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
|+.++.. +++.+..... +.+.++..-.++..+|+
T Consensus 250 ~v~g~~~-~~d~L~~~ar~~ifStalpP~~aaa~~~al~ 287 (388)
T COG0156 250 YIAGSAA-LIDYLRNRARPFIFSTALPPAVAAAALAALR 287 (388)
T ss_pred eeeCcHH-HHHHHHHhCCceeccCCCCHHHHHHHHHHHH
Confidence 9999988 9999887643 44455555555566663
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=140.50 Aligned_cols=115 Identities=29% Similarity=0.377 Sum_probs=89.9
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
|.+|||+|||+|.+++.+++.. ..+++|+|+|+.+++.|+.|+..+++ .++++++++|+.+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~---------------~~~~~~~~~D~~~~~~ 64 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGL---------------DDRVEVIVGDARDLPE 64 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTT---------------TTTEEEEESHHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccC---------------CceEEEEECchhhchh
Confidence 4689999999999999999886 68999999999999999999988876 3689999999988862
Q ss_pred -CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 111 -DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 111 -~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
...++||+|++||||......... ....+..+++++.++|||||.+++.
T Consensus 65 ~~~~~~~D~Iv~npP~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 65 PLPDGKFDLIVTNPPYGPRSGDKAA------------------------------LRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp TCTTT-EEEEEE--STTSBTT----------------------------------GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCceeEEEEECCCCccccccchh------------------------------hHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 223589999999999854221110 0113558999999999999999987
Q ss_pred eC
Q 043334 190 MG 191 (903)
Q Consensus 190 ~~ 191 (903)
.+
T Consensus 115 ~~ 116 (117)
T PF13659_consen 115 TP 116 (117)
T ss_dssp EE
T ss_pred eC
Confidence 54
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-14 Score=154.98 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=108.1
Q ss_pred cccCCcccCc--chhH-HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Q 043334 2 MVIPSIFIPE--DWSF-TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA 78 (903)
Q Consensus 2 ~~~p~vfiP~--~w~~-~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g 78 (903)
...||||.=. |... -+++.|.... +.+|||+|||.|.+++.+++..|..+++.+|+|..+|+.|++|+..|+
T Consensus 132 ~t~pGVFS~~~lD~GS~lLl~~l~~~~-----~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~ 206 (300)
T COG2813 132 KTLPGVFSRDKLDKGSRLLLETLPPDL-----GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG 206 (300)
T ss_pred EeCCCCCcCCCcChHHHHHHHhCCccC-----CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC
Confidence 3578999885 4443 3344444332 349999999999999999999999999999999999999999999998
Q ss_pred cccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 79 LDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
++ +..++.+|+.+.... +||+||||||++..... .
T Consensus 207 ~~----------------~~~v~~s~~~~~v~~---kfd~IisNPPfh~G~~v---~----------------------- 241 (300)
T COG2813 207 VE----------------NTEVWASNLYEPVEG---KFDLIISNPPFHAGKAV---V----------------------- 241 (300)
T ss_pred CC----------------ccEEEEecccccccc---cccEEEeCCCccCCcch---h-----------------------
Confidence 73 447888898887543 89999999999953221 1
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHH
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQG 197 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~ 197 (903)
...-.++++++.++|++||.+.+.........
T Consensus 242 -------~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~ 273 (300)
T COG2813 242 -------HSLAQEIIAAAARHLKPGGELWIVANRHLPYE 273 (300)
T ss_pred -------HHHHHHHHHHHHHhhccCCEEEEEEcCCCChH
Confidence 11233889999999999999999887554443
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.3e-14 Score=160.43 Aligned_cols=183 Identities=11% Similarity=0.119 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~ 725 (903)
..+..+.+++.+++.+|.+ . .+++++|.. ++..++. ++++||+|++++|.|+.. ...++..|++++.+++
T Consensus 52 ~~p~~~~le~~lA~l~g~~-~---~v~~~sG~~-ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v~~ 125 (390)
T PRK08064 52 GNPTREALEDIIAELEGGT-K---GFAFASGMA-AISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFVDM 125 (390)
T ss_pred CChhHHHHHHHHHHHhCCC-C---eEEECCHHH-HHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEECC
Confidence 3445677888888888865 2 588888854 6776665 788999999999988743 3455678999999986
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
. |++.+++.+++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|...... .
T Consensus 126 ~-------d~~~l~~~l~~~t-klV~l~~p~-NptG~~~d---l~~I~~la~~~g~~vvvD~a~~~~~~~--~------- 184 (390)
T PRK08064 126 T-------NLEEVAQNIKPNT-KLFYVETPS-NPLLKVTD---IRGVVKLAKAIGCLTFVDNTFLTPLLQ--K------- 184 (390)
T ss_pred C-------CHHHHHHhcCCCc-eEEEEECCC-CCCcEecc---HHHHHHHHHHcCCEEEEECCCCccccc--C-------
Confidence 3 6889999998777 599999998 99999987 778888899999999999999532111 0
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccc-ccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLT-GALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYA 868 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~-~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~a 868 (903)
+ +. . +..+++.|+||.++. +|...|++++.++++++.+..+....+.+...+.+
T Consensus 185 ~-~~----~----g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a 239 (390)
T PRK08064 185 P-LD----L----GADVVLHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGAVLGVQDC 239 (390)
T ss_pred c-hh----h----CCcEEEeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 1 11 1 246899999999863 44677888887655888888766544443333333
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-14 Score=159.67 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=138.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv 721 (903)
+..+..+-.+.+++.++++.|.+. .+++++|+ .++..++.++++|||+|+++.+.|+.. ...++..|++++
T Consensus 57 Y~r~~~p~~~~le~~lA~l~g~~~----av~~~sG~-~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v~ 131 (389)
T PRK05968 57 YSRGDNPTVRAFEEMLAKLEGAED----ARGFASGM-AAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEVD 131 (389)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCc----EEEECCHH-HHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceEE
Confidence 344444456778888888888753 46666665 688888888999999999999999863 355677899999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
.++.. |++.+++.+ +++ ++|++++|+ ||++ +..++++|.++|+++|++||+|++|+...+.. +
T Consensus 132 ~vd~~-------d~~~l~~~i-~~t-klV~ie~pt-~~~~---~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-p--- 194 (389)
T PRK05968 132 YVDGR-------DEEAVAKAL-PGA-KLLYLESPT-SWVF---ELQDVAALAALAKRHGVVTMIDNSWASPVFQR-P--- 194 (389)
T ss_pred EeCCC-------CHHHHHHhc-ccC-CEEEEECCC-CCCC---cHHHHHHHHHHHHHcCCEEEEECCCcchhccC-c---
Confidence 98752 688898887 445 589998776 6654 55789999999999999999999996433221 1
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG---LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~---~~~~s~~~Q~aa~~~L 873 (903)
+. . +..+++.|+||.++.+| .+.|+++++++ ++++++.... ....+...++.+...|
T Consensus 195 ------~~----~----g~Divv~S~tK~l~g~~~~~gG~i~~~~~-~~~~l~~~~~~~~g~~~~~~~A~~~l~~L 255 (389)
T PRK05968 195 ------IT----L----GVDLVIHSASKYLGGHSDTVAGVVAGSKE-HIARINAEAYPYLGAKLSPFEAWLLLRGL 255 (389)
T ss_pred ------hh----c----CCcEEEeeccccccCCCCeEEEEEEECHH-HHHHHHHHHHHhCCCCCChHHHHHHHccc
Confidence 11 0 23578899999998765 58899998776 8887775322 2345555555555555
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=158.37 Aligned_cols=240 Identities=8% Similarity=0.008 Sum_probs=157.1
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQNMS--ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~~~--~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|.- .++ ..|.+.+++.+.+.++... .-..+....+++.+.+..+. + .++++++++++..
T Consensus 37 ~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~-~~~~~~SGseA~e 111 (396)
T PRK04073 37 PEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGK----D-MVLPMNTGAEAVE 111 (396)
T ss_pred CCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcCCC----C-eEEEcCChHHHHH
Confidence 46778899865532 233 5788899998888764322 11234456677777775542 2 6888888888888
Q ss_pred HHHHHhcc---------CC-CeEEEcCCCcHH-HHHHHHHcCCEEEE---ecCCCC---CCcccCHHHHHHHhhcCCCcE
Q 043334 687 KLVLCCIL---------EG-GTLCFPAGSNGN-YVSAARFLKANIVN---IPTESE---VGFKMTEKTLVTILETVKKPW 749 (903)
Q Consensus 687 ~ll~~l~~---------pG-D~Vlv~~P~y~~-~~~~~~~~G~~vv~---v~~~~~---~~f~ld~~~L~~~l~~~~~~~ 749 (903)
.++..... +| +.|+..+-+|-+ +.......+..... -+.... -.| .|++.+++.+++++ .+
T Consensus 112 ~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~i~~~~-~~ 189 (396)
T PRK04073 112 TAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPY-GDLEALKAAITPNT-AA 189 (396)
T ss_pred HHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCC-CCHHHHHHhcccCe-EE
Confidence 77766531 34 567777665544 33333333311100 000000 011 27899999887665 46
Q ss_pred EEEECCCCCCcccCCCHH-HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 750 VYISGPTINPTGLLYSNK-EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~e-el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
+++++|+ ||||.+++.+ .+++|.++|+++|+++|+||+|.++.+.+... ........+ -+.+||
T Consensus 190 viiep~~-~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~-------~~~~~~~~p-------di~~~s 254 (396)
T PRK04073 190 FLVEPIQ-GEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLF-------ACDWDNVTP-------DMYILG 254 (396)
T ss_pred EEEcCcc-CCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHH-------HhhhcCCCC-------CEEEec
Confidence 6666664 9999998764 69999999999999999999998765544321 011111111 234589
Q ss_pred hhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 829 LKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 829 K~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
|.+|++|+|+||++++++ +++.+.... .+.+.+.+.|.++.++|+
T Consensus 255 K~lg~gg~~ig~~~~~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aaL~ 301 (396)
T PRK04073 255 KALGGGVFPISCVAANRD-ILGVFTPGSHGSTFGGNPLACAVSIAALE 301 (396)
T ss_pred ccccCCCCcceEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 999998999999999987 888886533 366788999999999995
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-14 Score=160.55 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~ 727 (903)
+..+++++.+++..|.. ..++++++++|+.+++.+++++||+|+++.++|...... ++..|+++..++.
T Consensus 61 Ptv~~lE~~la~leg~~-----~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~-- 133 (432)
T PRK06702 61 PTLAAFEQKLAELEGGV-----GAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP-- 133 (432)
T ss_pred cHHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC--
Confidence 34777888888887764 367788889999988988999999999999999876665 6788999999864
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.+|++.++++++++++ +|++.+|+ ||||.+.+ +++|.++|+++|+++|+|++|. .+ +
T Consensus 134 ----~~d~~~l~~~I~~~Tk-~I~~e~pg-nP~~~v~D---i~~I~~iA~~~gi~livD~T~~------tP--------~ 190 (432)
T PRK06702 134 ----NLTADEIVALANDKTK-LVYAESLG-NPAMNVLN---FKEFSDAAKELEVPFIVDNTLA------TP--------Y 190 (432)
T ss_pred ----CCCHHHHHHhCCcCCe-EEEEEcCC-CccccccC---HHHHHHHHHHcCCEEEEECCCC------ch--------h
Confidence 3689999999999884 99999998 99999998 8999999999999999999983 11 1
Q ss_pred hhh-hccCCCCCCceEEEccCch-----hccccccee-----eEEEeC
Q 043334 808 LSK-LYSSTNSSFNVSLLGGLSL-----KMLTGALKF-----GFLVLN 844 (903)
Q Consensus 808 ~~~-l~~~~~~~~~vI~l~S~SK-----~~g~~GlRi-----G~lv~~ 844 (903)
+.. +.. +-.|+++|+|| +.+++|.++ +|..++
T Consensus 191 ~~~pl~~-----GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~ 233 (432)
T PRK06702 191 LCQAFEH-----GANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGK 233 (432)
T ss_pred hCChhhc-----CCCEEEEccccccCCCcceeceEEEeCCCccccccc
Confidence 111 111 24699999999 777888887 676654
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=157.07 Aligned_cols=234 Identities=9% Similarity=0.035 Sum_probs=158.1
Q ss_pred CCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCCCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNMSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|..... ..+.+.+++.+.+..+.... -..+....+++.+++..|. + .+++++++++++.
T Consensus 38 ~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~~~~SGs~A~e 112 (401)
T PRK00854 38 TDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGS--H---KVLPMNSGAEAVE 112 (401)
T ss_pred CCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhCCC--C---EEEEeCCcHHHHH
Confidence 35677888866543333 37788999988887654321 1234566788888877653 2 6888888888888
Q ss_pred HHHHHhcc---------CC-CeEEEcCCCcHHHHHHHHHcCC-------------EEEEecCCCCCCcccCHHHHHHHhh
Q 043334 687 KLVLCCIL---------EG-GTLCFPAGSNGNYVSAARFLKA-------------NIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 687 ~ll~~l~~---------pG-D~Vlv~~P~y~~~~~~~~~~G~-------------~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.++..+.. +| +.|++..-+|-+....+...+. .+..++. .|++.+++.+.
T Consensus 113 ~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~i~ 185 (401)
T PRK00854 113 TAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-------GDAEALEAAIT 185 (401)
T ss_pred HHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 88877742 23 5677766666443322222221 1222221 47899999998
Q ss_pred cCCCcEEEEECCCCCCcccCCCH-HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSN-KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~-eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
+++ ++|++++|+ ||||.+++. +.+++|.++|++||+++|+||+|.++.+.+... . .....-.+ |.++
T Consensus 186 ~~~-~aii~e~~~-~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~---~----~~~~g~~~---D~~~ 253 (401)
T PRK00854 186 PNT-VAFLVEPIQ-GEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL---A----EEHEGIEA---DVTL 253 (401)
T ss_pred CCe-EEEEEcccc-CCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh---H----HhhcCCCC---CEEE
Confidence 766 599999997 999999984 569999999999999999999998765544321 0 01111111 2232
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+||.++..+||+||++++++ +++.+..... ..+.+.+.|.++.+.|+
T Consensus 254 ----~~K~l~gg~~~ig~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aa~~a~L~ 302 (401)
T PRK00854 254 ----IGKALSGGFYPVSAVLSNSE-VLGVLKPGQHGSTFGGNPLACAVARAALK 302 (401)
T ss_pred ----ecccccCCccCeEEEEEcHH-HHhcccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 36999754589999999987 8888764432 56678899999999984
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=156.96 Aligned_cols=165 Identities=8% Similarity=0.033 Sum_probs=123.9
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCCC
Q 043334 655 PSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEVG 730 (903)
Q Consensus 655 ~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~~ 730 (903)
.++++.+++..|. . ++++++|+++++..++.+++++||+|++++|.|+++...+ +..|+++..++..
T Consensus 64 ~~Le~~iA~le~~--~---~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v~~v~~~---- 134 (394)
T PRK09028 64 FAFQAAIVELEGG--A---GTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIETTYYDPM---- 134 (394)
T ss_pred HHHHHHHHHHhCC--C---cEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceEEEEECCC----
Confidence 3444444444443 2 5889999999999999999999999999999998877543 5578888877642
Q ss_pred cccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 731 f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
+.+.+++++++++ ++|++++|+ ||||.+ .++++|+++|+++|+++|+|++|+.... -.+ +
T Consensus 135 ---~~e~l~~~l~~~T-klV~lesps-NPtg~v---~dl~~I~~la~~~g~~lvvD~t~a~p~~-~~P---------l-- 194 (394)
T PRK09028 135 ---IGEGIRELIRPNT-KVLFLESPG-SITMEV---QDVPTLSRIAHEHDIVVMLDNTWASPIN-SRP---------F-- 194 (394)
T ss_pred ---CHHHHHHhcCcCc-eEEEEECCC-CCCCcH---HHHHHHHHHHHHcCCEEEEECCcccccc-CCc---------c--
Confidence 3577888888877 599999998 999887 4599999999999999999999963211 011 1
Q ss_pred hccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhC
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~ 855 (903)
.. +-.++++|.+|.++.+ +...|+++.+++ +.+.+...
T Consensus 195 --~~----GaDivv~S~tK~l~Gh~d~~~G~~~~~~~-~~~~l~~~ 233 (394)
T PRK09028 195 --EM----GVDISIQAATKYIVGHSDVMLGTATANEK-HWDQLREH 233 (394)
T ss_pred --cc----CceEEEEeCCeEecCCCCEEEEEEECCHH-HHHHHHHH
Confidence 11 3579999999999544 566677766554 66666543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=133.57 Aligned_cols=111 Identities=26% Similarity=0.417 Sum_probs=86.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..++.+|+|+|+|++|++.|++++...+. .++++++++|+ ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~i~~~~~d~-~~~ 64 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL---------------SDRITFVQGDA-EFD 64 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT---------------TTTEEEEESCC-HGG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC---------------CCCeEEEECcc-ccC
Confidence 46899999999999999999988899999999999999999999965554 37999999999 333
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+|+++- +... .... .+...++++.+.+.|+|||++++.
T Consensus 65 ~~~~~~~D~v~~~~-~~~~---~~~~------------------------------~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 65 PDFLEPFDLVICSG-FTLH---FLLP------------------------------LDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TTTSSCEEEEEECS-GSGG---GCCH------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCCCCEEEECC-Cccc---cccc------------------------------hhHHHHHHHHHHHhcCCCcEEEEE
Confidence 33334799999753 2100 0000 022347899999999999999986
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 111 ~ 111 (112)
T PF12847_consen 111 T 111 (112)
T ss_dssp E
T ss_pred E
Confidence 4
|
... |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.8e-14 Score=162.99 Aligned_cols=159 Identities=11% Similarity=0.101 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++..|.+ ..++++|+++++..++..++++||+|+++.+.|+.. ...++..|++++.+++
T Consensus 63 ~p~~~~Le~~lA~leg~~-----~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v~~vd~- 136 (431)
T PRK08248 63 NPTTDVFEKRIAALEGGI-----GALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGITVKFVDP- 136 (431)
T ss_pred CchHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCEEEEEECC-
Confidence 344677888888888743 466777778888888888899999999999988653 3456778999999986
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|+. +.. ..+
T Consensus 137 ------~d~e~l~~ai~~~t-klV~l~sp~-NPtG~v~d---i~~I~~la~~~gi~vIvD~t~a~----~~~-----~~p 196 (431)
T PRK08248 137 ------SDPENFEAAITDKT-KALFAETIG-NPKGDVLD---IEAVAAIAHEHGIPLIVDNTFAS----PYL-----LRP 196 (431)
T ss_pred ------CCHHHHHHhcCCCC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEeCCCCc----ccc-----CCh
Confidence 26899999998776 599999998 99999998 67889999999999999999851 111 001
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+ .. +..+++.|++|.+|.+|.++|++++.
T Consensus 197 -l----~~----gaDivv~S~tK~lgg~g~~~Gg~v~~ 225 (431)
T PRK08248 197 -I----EH----GADIVVHSATKFIGGHGTSIGGVIVD 225 (431)
T ss_pred -h----Hc----CCCEEEEcCccccCCCCCceEEEEEe
Confidence 1 11 36789999999999999999988874
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=155.43 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHH----HHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYV----SAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~----~~~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++..|.+. .+++++|+. ++..++ .+++|||+|++++|.|+... ..++..|++++.++.
T Consensus 50 p~~~~Le~~la~l~g~~~----al~~~SG~~-Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~v~~vd~-- 121 (380)
T PRK06176 50 PTRFALEELIADLEGGVK----GFAFASGLA-GIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLSCTIIDT-- 121 (380)
T ss_pred hhHHHHHHHHHHHhCCCC----EEEECCHHH-HHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCeEEEEcCC--
Confidence 447778888888888653 488888865 666655 57799999999999998654 345668999888865
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|+...+. .+
T Consensus 122 -----~d~e~l~~ai~~~t-~lV~lesP~-Nptg~~~d---i~~I~~la~~~gi~vivD~t~a~~~~~-~p--------- 181 (380)
T PRK06176 122 -----SDLSQIKKAIKPNT-KALYLETPS-NPLLKITD---LAQCASVAKDHGLLTIVDNTFATPYYQ-NP--------- 181 (380)
T ss_pred -----CCHHHHHHhcCcCc-eEEEEECCC-CCCceecC---HHHHHHHHHHcCCEEEEECCccccccC-Cc---------
Confidence 37899999998776 599999998 99999987 778899999999999999999743222 11
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHhCCC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~~~~ 857 (903)
+. . +..+++.|++|.++.+|- -.|++++.++++.+.+...+.
T Consensus 182 ~~----~----gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~ 224 (380)
T PRK06176 182 LL----L----GADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN 224 (380)
T ss_pred cc----c----CCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH
Confidence 11 1 246899999999986664 457788766657777665443
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-13 Score=142.17 Aligned_cols=280 Identities=11% Similarity=0.085 Sum_probs=187.0
Q ss_pred CCCCCeEEccCCCCCCC-CcHHHHHHHHHH---HH-------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcE--Eec
Q 043334 612 TPNSGLIHMDVDQSFLP-IPSLVKAAIFES---FA-------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEF--IYA 678 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~-~p~~v~~al~~a---l~-------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I--~vt 678 (903)
...+..++|++|.--.. ..|+++..+.++ +. +|-+..|.+.++++..+.+-...-.... ++++ +-+
T Consensus 27 d~~p~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg~~s~a~k-E~Rv~~vQs 105 (410)
T KOG1412|consen 27 DLDPVKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLGADSPAIK-EDRVFGVQS 105 (410)
T ss_pred cCCcceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcCCCchhhh-hccccceee
Confidence 56677889988853211 122333222222 11 2556789999998888776322111112 1122 112
Q ss_pred CchHHHHHHH---HHHhccCCCeEEEcCCCcHHHHHHHHHcC-CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC
Q 043334 679 DCSQSLFNKL---VLCCILEGGTLCFPAGSNGNYVSAARFLK-ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISG 754 (903)
Q Consensus 679 ~Gs~~al~~l---l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G-~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~ 754 (903)
-++++++... +..++. ...|.+..|+|.++..+++..| .++..++..+.+.-.+|.+.+...+...+...+++.+
T Consensus 106 lsGTGAl~~~A~Fl~~~~~-~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLh 184 (410)
T KOG1412|consen 106 LSGTGALRIAADFLATFYN-KNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILH 184 (410)
T ss_pred ccccchhhhhHHHHHHhcc-cceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeee
Confidence 2334444433 333343 4679999999999999999999 5666777655555668999998888877666788888
Q ss_pred CC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc
Q 043334 755 PT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT 833 (903)
Q Consensus 755 P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~ 833 (903)
.+ |||||.-.+.|+|.+|++..++.+.+.+-|-+|.++.-+....+.|.++-+... + ...+++.||+|.||+
T Consensus 185 aCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~--g-----~e~fv~QSFaKNfGl 257 (410)
T KOG1412|consen 185 ACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQ--G-----FELFVCQSFAKNFGL 257 (410)
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhc--C-----CeEEEEhhhhhhccc
Confidence 88 999999999999999999999999999999999988766555455665544442 1 358999999999999
Q ss_pred ccceeeE--EEeCcHHHHHHHHh----CC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 834 GALKFGF--LVLNHPQLVDAFSS----FP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 834 ~GlRiG~--lv~~~~~li~~l~~----~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
.|-|+|- ++.++...+..+.+ +. ..+.|+.....++.+.|. +....+++.+-+..+..++++.|..|
T Consensus 258 YneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~-tP~lre~W~~sik~MssRI~~MR~aL 332 (410)
T KOG1412|consen 258 YNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLS-TPELREQWIQSIKTMSSRIKKMRTAL 332 (410)
T ss_pred ccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 34555545554443 22 277888899999999995 22222334444444555555555444
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-13 Score=153.15 Aligned_cols=190 Identities=15% Similarity=0.089 Sum_probs=140.6
Q ss_pred CCcHHHHHHHHHHHHcc-CCCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc---cCC
Q 043334 628 PIPSLVKAAIFESFARQ-NMSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI---LEG 696 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y-~~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~---~pG 696 (903)
++|+.+.+++.+.+..+ ...... .+..+.+++.+++.+|.+.+ +|++|+|+++++..++.+++ .+|
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---~i~~t~~~t~a~~~al~~~~~~~~~~ 86 (379)
T TIGR03402 10 RVDPEVLEAMLPYFTEYFGNPSSMHSFGGEVGKAVEEAREQVAKLLGAEPD---EIIFTSGGTESDNTAIKSALAAQPEK 86 (379)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCcHHHHHHHHHHHHHHhcCCC
Confidence 46778888888776532 111111 23345677888888897643 89999999999998887764 457
Q ss_pred CeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 697 GTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 697 D~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
|.|+++..+|+.+...+ +..|++++.+|++. ++.+|++++++.+++++ +++++++++ ||||.+++ +++|.
T Consensus 87 ~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~g~~~~~~l~~~i~~~~-~lv~i~~~~-n~tG~~~~---~~~I~ 159 (379)
T TIGR03402 87 RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDE--EGRLDLEELRAAITDDT-ALVSVMWAN-NETGTIFP---IEEIG 159 (379)
T ss_pred CeEEEcccccHHHHHHHHHHHHcCCEEEEEccCC--CCcCCHHHHHHhcCCCc-EEEEEEccc-CCeeeccc---HHHHH
Confidence 89999998888765443 44699999999864 45689999999998776 589999998 99999999 56788
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
++|+++|+++++|++++. +..+ .+ +... +..+++.|..|.+|.+| +|++...+.
T Consensus 160 ~l~~~~g~~vivD~~~~~---g~~~---~~-------~~~~----~~D~~~~s~~K~~gp~G--~g~l~v~~~ 213 (379)
T TIGR03402 160 EIAKERGALFHTDAVQAV---GKIP---ID-------LKEM----NIDMLSLSGHKLHGPKG--VGALYIRKG 213 (379)
T ss_pred HHHHHcCCEEEEECcccc---cccc---cC-------cccC----CCCEEEEcHHHcCCCCc--eEEEEECCC
Confidence 999999999999999852 1111 11 1111 24577888889777666 788887754
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=155.20 Aligned_cols=227 Identities=10% Similarity=0.031 Sum_probs=158.2
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchH-HHHHHHHHHhcc---CCCeEEEcCCCcHHHHHHHHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ-SLFNKLVLCCIL---EGGTLCFPAGSNGNYVSAARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~-~al~~ll~~l~~---pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~ 725 (903)
...+...+.+.+.+++|++.. . ..++++|++ .++.+++.++-. +||.|+++.-+|.....++...|++++.+++
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~-~-~a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~~pv~Vd~ 180 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSI-K-SAFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGFEPRVIET 180 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCC-C-EEEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCCeEEEeee
Confidence 456778889999998998733 1 366666666 577766666542 5899999999999999999999999999996
Q ss_pred -CCCCCcccCHHHHHHHhhcCC--CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCC
Q 043334 726 -ESEVGFKMTEKTLVTILETVK--KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGW 802 (903)
Q Consensus 726 -~~~~~f~ld~~~L~~~l~~~~--~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~ 802 (903)
.++++|.+|++++++++++++ ..++++++|+ ||...+.+++++|.++|++||+++|+|++|+... ..
T Consensus 181 ~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~---t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~---~~---- 250 (444)
T TIGR03531 181 VLDGDELTTDVEDIERAIEEIGPDNILCVLSTTS---CFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQS---NK---- 250 (444)
T ss_pred eecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCC---cCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcC---hh----
Confidence 234679999999999998632 2356666563 5666667889999999999999999999997311 00
Q ss_pred chhhhhhhhccCCCCCC-ceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccch
Q 043334 803 DLEGCLSKLYSSTNSSF-NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKAR 881 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~-~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~ 881 (903)
...... .... .+ -.+++.|++|.+.+||+ .|.++++++++++.+.........++++|.+...++. .+
T Consensus 251 -~~~~~~--~g~~--~Grad~vv~s~hK~l~~pg~-Gg~I~~~d~el~~~i~~~y~g~~~~s~~~~~~~~ll~--~G--- 319 (444)
T TIGR03531 251 -YMELIN--KAIK--VGRVDAVVSSTDKNFMVPVG-GAIIYSFDENFIQEISKSYPGRASASPSLDVLITLLS--LG--- 319 (444)
T ss_pred -hhhhhh--cccc--ccCCCeEEEeCccCCCCCCC-EEEEEECCHHHHHHHHHhccCCCCChHHHHHHHHHHH--hC---
Confidence 000000 0110 01 26778899999998888 3344476666888888754433355678888888884 33
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 043334 882 DLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 882 ~~~~~l~~~r~~y~~Rr~~l 901 (903)
.+.++++.+.+.++++.+
T Consensus 320 --~~g~~~li~~~~~~a~~l 337 (444)
T TIGR03531 320 --SKGYLELLKERKEMYKYL 337 (444)
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 134445555555555444
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=154.39 Aligned_cols=167 Identities=11% Similarity=0.087 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++..|.+ ++++++|+++++..++.+++++||+|++++|.|+..... .+..|+++..++..
T Consensus 50 Pt~~~lE~~lA~l~g~~-----~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~~d~~- 123 (377)
T TIGR01324 50 LTHFALQDAMCELEGGA-----GCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITYYDPL- 123 (377)
T ss_pred ccHHHHHHHHHHHhCCC-----cEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEEECCC-
Confidence 34566777777777742 588899999999999999999999999999999887643 35678888877542
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
+.+.+++++++++ ++|++++|+ ||||.+. ++++|+++|+++|+++|+|++|+.-.. ..+
T Consensus 124 ------~~e~l~~~i~~~t-klV~lesp~-Np~g~~~---dl~~I~~la~~~g~~livD~t~a~g~~-~~p--------- 182 (377)
T TIGR01324 124 ------IGEDIATLIQPNT-KVLFLEAPS-SITFEIQ---DIPAIAKAARNPGIVIMIDNTWAAGLL-FKP--------- 182 (377)
T ss_pred ------CHHHHHHhcCCCc-eEEEEECCC-CCCCcHH---HHHHHHHHHHHcCCEEEEECCCccccc-cCc---------
Confidence 2378888888877 599999998 9998774 599999999999999999999963221 111
Q ss_pred hhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHh
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~ 854 (903)
+ .. +..++++|++|.++.+ +...|+++++++ .++.+..
T Consensus 183 l----~~----gaDivv~S~tK~l~G~~d~~gG~v~~~~~-~~~~l~~ 221 (377)
T TIGR01324 183 L----EH----GVDISIQAGTKYLVGHSDIMIGTVVANAR-TWDQLRE 221 (377)
T ss_pred c----cc----CceEEEecCceeccCCCCceEEEEEeCHH-HHHHHHH
Confidence 1 11 3578999999999744 467899988876 6666654
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.5e-14 Score=143.51 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=114.1
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.|...|++.+..... ..++.+|||+|||+|..++.++...++.+|+|+|+|++|++.|++|++.+++
T Consensus 28 ~~~~~~~d~l~l~~~-l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------ 94 (187)
T PRK00107 28 LWERHILDSLAIAPY-LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------ 94 (187)
T ss_pred HHHHHHHHHHHHHhh-cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------
Confidence 577777776544322 3348899999999999999999888889999999999999999999998887
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
++++++++|+.+... .++||+|++|- . . .+..
T Consensus 95 ----~~i~~~~~d~~~~~~--~~~fDlV~~~~----------~----~----------------------------~~~~ 126 (187)
T PRK00107 95 ----KNVTVVHGRAEEFGQ--EEKFDVVTSRA----------V----A----------------------------SLSD 126 (187)
T ss_pred ----CCEEEEeccHhhCCC--CCCccEEEEcc----------c----c----------------------------CHHH
Confidence 359999999988754 34899999751 0 0 0236
Q ss_pred HHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 172 AVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 172 ~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+++++++.|||||++++..+.... ..+..+.+..|+.+...+...
T Consensus 127 ~l~~~~~~LkpGG~lv~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 127 LVELCLPLLKPGGRFLALKGRDPE-EEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred HHHHHHHhcCCCeEEEEEeCCChH-HHHHHHHHhcCceEeeeEEEe
Confidence 799999999999999999877544 444678888899887775444
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-12 Score=150.32 Aligned_cols=214 Identities=13% Similarity=0.066 Sum_probs=159.8
Q ss_pred CCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 615 SGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 615 ~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.++++|+.++ -.+...+.++++..+++.+|+. ..|...+.+.+++.+++++|.+.. +++++|-.+.+.
T Consensus 102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~a----ll~sSGy~AN~~ 177 (476)
T PLN02955 102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDC----LVCPTGFAANMA 177 (476)
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcE----EEECChHHHHHH
Confidence 4678877554 3355788899999999998864 356777888899999999887644 888888887776
Q ss_pred HHHHHh--------------ccCCCeEEEcCCCcHHHHHHHHHc----CCEEEEecCCCCCCcccCHHHHHHHhhcC--C
Q 043334 687 KLVLCC--------------ILEGGTLCFPAGSNGNYVSAARFL----KANIVNIPTESEVGFKMTEKTLVTILETV--K 746 (903)
Q Consensus 687 ~ll~~l--------------~~pGD~Vlv~~P~y~~~~~~~~~~----G~~vv~v~~~~~~~f~ld~~~L~~~l~~~--~ 746 (903)
. +.++ .+++|.|+...-.+......++.. +++++.++. -|++.|++.++.. .
T Consensus 178 ~-i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~H-------ND~~~Le~~L~~~~~~ 249 (476)
T PLN02955 178 A-MVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRH-------CDMYHLNSLLSSCKMK 249 (476)
T ss_pred H-HHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCC-------CCHHHHHHHHHhCCCC
Confidence 5 4444 245678888888899988888877 577877765 2688888887542 2
Q ss_pred CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEcc
Q 043334 747 KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGG 826 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S 826 (903)
+++|++..-. +++|.+.+ +++|.++|++||+++|+||+|+...++.... .....++-.+ +..|+++|
T Consensus 250 ~~~Vv~EgV~-SmdGdiap---L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~------G~~e~~g~~~---di~ii~~T 316 (476)
T PLN02955 250 RKVVVTDSLF-SMDGDFAP---MEELSQLRKKYGFLLVIDDAHGTFVCGENGG------GVAEEFNCEA---DVDLCVGT 316 (476)
T ss_pred ceEEEEeCCC-CCCCCcCC---HHHHHHHHHHcCcEEEEcccccCceecCCCC------cHHHHhCCCC---CCcEEEEe
Confidence 2355555445 99999999 8888888899999999999998777765432 1222222222 57899999
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhCCC
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~ 857 (903)
|||.+|+.| ||++++++ +++.+.....
T Consensus 317 LsKA~G~~G---Gfi~gs~~-~~~~l~~~~~ 343 (476)
T PLN02955 317 LSKAAGCHG---GFIACSKK-WKQLIQSRGR 343 (476)
T ss_pred CccchhccC---ceeecHHH-HHHHHHHhCC
Confidence 999997776 99999887 8888886554
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-13 Score=156.73 Aligned_cols=169 Identities=11% Similarity=0.095 Sum_probs=126.9
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEec
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIP 724 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~ 724 (903)
|.+ .++++++++++..|.+ ..++++|+++++..++ .++++||+|+++.|.|+.+... +...|++++.++
T Consensus 131 gnp-t~~aLE~~lA~leg~e-----~ai~~~SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v~~vd 203 (464)
T PLN02509 131 GNP-TRDALESLLAKLDKAD-----RAFCFTSGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVN 203 (464)
T ss_pred CCH-HHHHHHHHHHHHhCCC-----EEEEeCcHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCeEEEEeC
Confidence 444 6899999999987632 3455555678887655 5789999999999999998643 457899998886
Q ss_pred CCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCch
Q 043334 725 TESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDL 804 (903)
Q Consensus 725 ~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~ 804 (903)
. .|++++++++++++ ++|++++|+ ||||.+ .++++|+++|+++|+++|+|++|..-.+ +.+
T Consensus 204 ~-------~d~e~l~~ai~~~T-klV~lesPs-NPtG~i---~Dl~~I~~lAk~~g~~lIVD~A~a~~~~-~~p------ 264 (464)
T PLN02509 204 T-------TNLDEVAAAIGPQT-KLVWLESPT-NPRQQI---SDIRKIAEMAHAQGALVLVDNSIMSPVL-SRP------ 264 (464)
T ss_pred C-------CCHHHHHHhCCcCC-eEEEEECCC-CCCCCH---HHHHHHHHHHHHcCCEEEEECCcccccc-CCh------
Confidence 4 36889999998777 599999998 999987 5699999999999999999999853221 111
Q ss_pred hhhhhhhccCCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHh
Q 043334 805 EGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 805 ~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~ 854 (903)
.. . +..++++|++|.++.+|- =.|++++.++.+.+.+..
T Consensus 265 ---l~----~----gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~ 304 (464)
T PLN02509 265 ---LE----L----GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYF 304 (464)
T ss_pred ---hh----c----CCcEEEecCcccccCCCccceeEEEeccHHHHHHHHH
Confidence 11 1 246899999999875443 357888766545555443
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.8e-14 Score=160.60 Aligned_cols=158 Identities=10% Similarity=0.086 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH----cCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF----LKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~----~G~~vv~v~~~~ 727 (903)
+..+.+++.+++..|.+ ..++++++++++..++.+++++||+|+++.+.|+.....+.. .|+++..++.
T Consensus 58 pt~~~Le~~lA~l~g~~-----~~l~~ssG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~v~~~d~-- 130 (425)
T PRK06084 58 PTNDVLEQRVAALEGGV-----GALAVASGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGIETRFAAH-- 130 (425)
T ss_pred chHHHHHHHHHHHhCCC-----ceeEehhHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhcccceeEEEEECC--
Confidence 34567888888877743 244555666999999999999999999999999865444432 5777766653
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|++||+|++|+.... .. +
T Consensus 131 -----~d~e~le~ai~~~t-klV~lesp~-NPtG~v~d---l~~I~~la~~~~i~vVvD~a~a~~~~-~~--------p- 190 (425)
T PRK06084 131 -----DDIAALEALIDERT-KAVFCESIG-NPAGNIID---IQALADAAHRHGVPLIVDNTVATPVL-CR--------P- 190 (425)
T ss_pred -----CCHHHHHHHhccCC-cEEEEeCCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-CC--------h-
Confidence 37899999998777 599999998 99999998 78899999999999999999963211 11 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+. . +..+++.|+||.++.+|.++|.+++.
T Consensus 191 ~~----~----gaDivv~S~tK~l~G~g~~~gG~v~~ 219 (425)
T PRK06084 191 FE----H----GADIVVHSLTKYIGGHGTSIGGIVVD 219 (425)
T ss_pred hh----c----CCCEEEECchhcccccccceeEEEEe
Confidence 11 1 24699999999999999999987775
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-13 Score=150.58 Aligned_cols=197 Identities=12% Similarity=0.057 Sum_probs=143.2
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHcc-CC-CC-----C--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 620 MDVDQSFLPIPSLVKAAIFESFARQ-NM-SE-----S--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 620 Ls~g~p~~~~p~~v~~al~~al~~y-~~-~~-----G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
|+.+.+. ++|+.+++++.+.+..+ .. .. + ..+..+.+++.+++.+|.+.+ +|++|+|++++++.++.
T Consensus 3 ld~a~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~---~v~~t~~~t~a~~~~l~ 78 (364)
T PLN02651 3 LDMQATT-PIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK---EIIFTSGATESNNLAIK 78 (364)
T ss_pred ccCcCCC-CCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCCHHHHHHHHHH
Confidence 3444443 46788999988876442 11 11 1 134456778888888887643 89999999999777665
Q ss_pred Hh----ccCCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 691 CC----ILEGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~l----~~pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
.+ .++||+|+++...|+.+...+ +..|++++.++++. ++.+|++.+++++++++ +++++++++ ||||.+
T Consensus 79 ~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~--~~~~d~~~l~~~i~~~t-~lv~v~~~~-n~tG~~ 154 (364)
T PLN02651 79 GVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKS--DGLVDLDELAAAIRPDT-ALVSVMAVN-NEIGVI 154 (364)
T ss_pred HHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCC--CCcCCHHHHHHhcCCCc-EEEEEECCC-CCceec
Confidence 54 478999999998887654433 45799999999863 46689999999998776 589999998 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
.+ +++|.++|+++|+++++|.+++.- ..+. + +... +..+++.|..|.+|.+| +|+++.
T Consensus 155 ~~---l~~I~~~~~~~g~~~~vD~a~~~g---~~~~---~-------~~~~----~~D~~~~s~hK~~gp~G--~g~l~v 212 (364)
T PLN02651 155 QP---VEEIGELCREKKVLFHTDAAQAVG---KIPV---D-------VDDL----GVDLMSISGHKIYGPKG--VGALYV 212 (364)
T ss_pred cc---HHHHHHHHHHcCCEEEEEcchhhC---Cccc---C-------cccC----CCCEEEechhhhCCCCc--eEEEEE
Confidence 98 788899999999999999998521 1110 0 1111 35788899999544334 899988
Q ss_pred CcH
Q 043334 844 NHP 846 (903)
Q Consensus 844 ~~~ 846 (903)
.++
T Consensus 213 ~~~ 215 (364)
T PLN02651 213 RRR 215 (364)
T ss_pred cCC
Confidence 875
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=137.20 Aligned_cols=166 Identities=14% Similarity=0.130 Sum_probs=124.5
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHH-HHHHHcCCEEEEecCCCCCCcccC
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYV-SAARFLKANIVNIPTESEVGFKMT 734 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~-~~~~~~G~~vv~v~~~~~~~f~ld 734 (903)
.+++.+++.++... + ++++++|+++++..++.+++++|++|++++|+|++.. ..++..|++++.++.+..+....+
T Consensus 4 ~~~~~l~~~~~~~~--~-~~~~~~~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 80 (170)
T cd01494 4 ELEEKLARLLQPGN--D-KAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWVAAELAGAKPVPVPVDDAGYGGLD 80 (170)
T ss_pred HHHHHHHHHcCCCC--C-cEEEeCCcHHHHHHHHHHhCCCCCEEEEeecccceehhhHHHhcCCEEEEeccCCCCccchh
Confidence 34455555555332 3 7999999999999999999989999999999999988 888999999999998754333333
Q ss_pred HHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC
Q 043334 735 EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS 814 (903)
Q Consensus 735 ~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~ 814 (903)
.+.+++.....+.+++++++|+ ||+|..++. ++|.++|+++|+++|+|++|..+....... . ...
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~-~~~g~~~~~---~~l~~~~~~~~~~li~D~a~~~~~~~~~~~---------~-~~~- 145 (170)
T cd01494 81 VAILEELKAKPNVALIVITPNT-TSGGVLVPL---KEIRKIAKEYGILLLVDAASAGGASPAPGV---------L-IPE- 145 (170)
T ss_pred hhhhhhccccCceEEEEEecCc-CCCCeEcCH---HHHHHHHHHcCCEEEEeccccccccccccc---------c-ccc-
Confidence 3355554433444689999998 999999884 788888999999999999997655543210 0 011
Q ss_pred CCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 815 TNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
.+..+++.|++|.++. .++||+++.
T Consensus 146 ---~~~d~~~~s~~K~~~~--~~~G~l~~~ 170 (170)
T cd01494 146 ---GGADVVTFSLHKNLGG--EGGGVVIVK 170 (170)
T ss_pred ---ccCCEEEEEcccccCC--CceEEEEeC
Confidence 1357889999999974 789999863
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-14 Score=155.47 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=104.4
Q ss_pred cccCCcccCcc---hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Q 043334 2 MVIPSIFIPED---WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA 78 (903)
Q Consensus 2 ~~~p~vfiP~~---w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g 78 (903)
...||||.+.. -+..+++.+... ...+|||+|||+|.+++.+++..+..+|+++|+|+.|++.|++|+..|+
T Consensus 170 ~~~pgvFs~~~lD~gt~lLl~~l~~~-----~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~ 244 (342)
T PRK09489 170 KTLPGVFSRDGLDVGSQLLLSTLTPH-----TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANG 244 (342)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcccc-----CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 35799999852 233444444422 2358999999999999999999888899999999999999999999887
Q ss_pred cccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 79 LDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
+ ..+++.+|..+.. .++||+|++||||+.....
T Consensus 245 l-----------------~~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~~~--------------------------- 277 (342)
T PRK09489 245 L-----------------EGEVFASNVFSDI---KGRFDMIISNPPFHDGIQT--------------------------- 277 (342)
T ss_pred C-----------------CCEEEEccccccc---CCCccEEEECCCccCCccc---------------------------
Confidence 6 3567888887643 2389999999999842211
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcH
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQ 196 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~ 196 (903)
..+...++++++.++|||||.+++..+.....
T Consensus 278 ------~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y 309 (342)
T PRK09489 278 ------SLDAAQTLIRGAVRHLNSGGELRIVANAFLPY 309 (342)
T ss_pred ------cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCCh
Confidence 11224488999999999999999987654433
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-13 Score=152.86 Aligned_cols=175 Identities=11% Similarity=0.030 Sum_probs=133.5
Q ss_pred cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCE
Q 043334 644 QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKAN 719 (903)
Q Consensus 644 y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~ 719 (903)
|.++++..+.++++++.++...|.+ + .+++++ +++++..++.++++|||+|++++|.|+++.. .++..|++
T Consensus 56 y~YsR~gnPt~~~Le~~la~le~~~---~-~v~~sS-G~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~ 130 (395)
T PRK05967 56 YTYGTRGTPTTDALCKAIDALEGSA---G-TILVPS-GLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVE 130 (395)
T ss_pred CccCCCCChHHHHHHHHHHHHhCCC---C-EEEECc-HHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeE
Confidence 5455666778899999998866532 2 466666 5799999999999999999999999999875 45778999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGW 799 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~ 799 (903)
+..++.. +.+.+++++++++ ++|++++|+ ||+| ...++++|+++|+++|+++|+|++|+...+.. +
T Consensus 131 v~~vd~~-------~~e~l~~al~~~T-klV~lesPs-NP~l---~v~dl~~I~~la~~~g~~vvVD~t~a~p~~~~-p- 196 (395)
T PRK05967 131 VEYYDPE-------IGAGIAKLMRPNT-KVVHTEAPG-SNTF---EMQDIPAIAEAAHRHGAIVMMDNTWATPLYFR-P- 196 (395)
T ss_pred EEEeCCC-------CHHHHHHhcCcCc-eEEEEECCC-CCCC---cHHHHHHHHHHHHHhCCEEEEECCccCceecC-h-
Confidence 9988642 3577999998887 599999998 9976 44679999999999999999999996432211 1
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhccc-ccceeeEEEeCcHHHHHHHHh
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT-GALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~-~GlRiG~lv~~~~~li~~l~~ 854 (903)
+. . +..|++.|.+|.++. .+...|+++.++. +.+.+..
T Consensus 197 --------l~----~----GaDivv~S~tKy~~Gh~d~~~G~v~~~~~-~~~~l~~ 235 (395)
T PRK05967 197 --------LD----F----GVDISIHAATKYPSGHSDILLGTVSANEK-CWPQLLE 235 (395)
T ss_pred --------hH----c----CCCEEEEecccccCCCCCeeEEEEEcCHH-HHHHHHH
Confidence 11 1 357999999998753 4566787776654 6665553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.4e-14 Score=148.40 Aligned_cols=138 Identities=18% Similarity=0.275 Sum_probs=105.6
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||+|||+|.+++.++.+.++.+|+|+|+|+.|++.+++|. ++++++++|+.++..
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------PEAEWITSDVFEFES 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------cCCEEEECchhhhcc
Confidence 46899999999999999888766789999999999999999874 368899999998754
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHH--HHHHHHHHhhcccCCcEEEE
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGL--IARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~--~~~~l~~~~~~LkpgG~ll~ 188 (903)
. .+||+|++||||...+..... ... +..+ +..|.+. +.+++..+..+|+|+|.+++
T Consensus 124 ~--~kFDlIIsNPPF~~l~~~d~~--~~~---------------~~~G---G~~g~~~l~~~~~l~~v~~~L~p~G~~~~ 181 (279)
T PHA03411 124 N--EKFDVVISNPPFGKINTTDTK--DVF---------------EYTG---GEFEFKVMTLGQKFADVGYFIVPTGSAGF 181 (279)
T ss_pred c--CCCcEEEEcCCccccCchhhh--hhh---------------hhcc---CccccccccHHHHHhhhHheecCCceEEE
Confidence 3 389999999999964332110 000 1111 4445554 36899999999999999888
Q ss_pred EeCCC------CcHHHHHHHHHHCCCeEE
Q 043334 189 NMGGR------PGQGVCKRLFERRGFRVD 211 (903)
Q Consensus 189 ~~~~~------~~~~~l~~ll~~~gf~~~ 211 (903)
...+. ......++++++.||...
T Consensus 182 ~yss~~~y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 182 AYSGRPYYDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred EEeccccccccCCHHHHHHHHHhcCcEec
Confidence 65542 356677899999999864
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-12 Score=150.93 Aligned_cols=239 Identities=8% Similarity=0.024 Sum_probs=161.6
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc-CCCCC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ-NMSES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y-~~~~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..| ...++ ..+.+.+++.+.+.++ ....+ ..+....+++.+.+..+ .+ .++++++++++..
T Consensus 36 ~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~---~v~~~~sGseA~e 110 (406)
T PRK12381 36 QQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATF--AD---RVFFCNSGAEANE 110 (406)
T ss_pred CCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccCccCCHHHHHHHHHHHhhCC--CC---eEEEcCCcHHHHH
Confidence 467788998664 33343 4778999998888653 22212 23445677888877543 22 7999999999888
Q ss_pred HHHHHhc--------cCCCeEEEcCCCcHHHHHHHHHcCCEEEE----ecCCC--CCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 687 KLVLCCI--------LEGGTLCFPAGSNGNYVSAARFLKANIVN----IPTES--EVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 687 ~ll~~l~--------~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~----v~~~~--~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
.++.... .....|+..+.+|-+....+...+..... .++.+ ..-...|++.+++.+.++. ..++
T Consensus 111 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~--aavi 188 (406)
T PRK12381 111 AALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALIDDQT--CAVI 188 (406)
T ss_pred HHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhccCCe--eEEE
Confidence 8877642 13467888888887765444333322110 01111 0011147899999887543 4455
Q ss_pred ECCCCCCcccCC--CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 753 SGPTINPTGLLY--SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 753 ~~P~~NPTG~v~--s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
..|. ||+|-++ +.+.+++|.++|++||+++|+||+|.++.+.|... . .....-.+ | +.||||.
T Consensus 189 iEPv-~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~---~----~~~~~v~p---D----i~t~sK~ 253 (406)
T PRK12381 189 VEPI-QGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY---A----YMHYGVTP---D----VLTTAKA 253 (406)
T ss_pred EeCC-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchh---h----hHhhCCCC---C----EEEehhh
Confidence 5798 9999876 68999999999999999999999998776655431 1 11111122 1 3599999
Q ss_pred cccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 831 MLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
++ +|+|+||++++++ +++.+..... +.+.+++.|.++.+.|+
T Consensus 254 l~-gG~~ig~~~~~~~-~~~~~~~~~~~~t~~~~pl~~aaa~a~l~ 297 (406)
T PRK12381 254 LG-GGFPIGAMLTTEK-CASVMTVGTHGTTYGGNPLASAVAGKVLE 297 (406)
T ss_pred hh-CCCceEEEEEcHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 98 8999999999987 9988875432 56778899999998774
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=148.38 Aligned_cols=192 Identities=12% Similarity=0.091 Sum_probs=137.2
Q ss_pred cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHH
Q 043334 630 PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGN 708 (903)
Q Consensus 630 p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~ 708 (903)
.+..++++.+.+.......|. ..+.+++.+++++|.+ +.++++|+++++..++.++ +++||+|+++.|+|..
T Consensus 9 ~~~~~~~v~~~~~~~~~~~g~--~~~~le~~la~~~g~~-----~~v~~~sgt~al~~~l~al~~~~Gd~Viv~~~~~~~ 81 (380)
T TIGR03588 9 DQDDIDAVVEVLKSDFLTQGP--TVPAFEEALAEYVGAK-----YAVAFNSATSALHIACLALGVGPGDRVWTTPITFVA 81 (380)
T ss_pred CHHHHHHHHHHHhcCCccCCh--hHHHHHHHHHHHHCCC-----eEEEEcCHHHHHHHHHHHcCCCCCCEEEeCCcchHH
Confidence 344577777777654333332 2344455555555653 2444556788999999988 8899999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh----cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE----TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 709 ~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~----~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
+...++..|++++.+++++ +++.+|++++++.++ +++ ++|++ + ||+|...+ +++|.++|+++|++||
T Consensus 82 ~~~~~~~~G~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~~~t-~~v~~---~-~~~G~~~~---~~~i~~l~~~~~~~lI 152 (380)
T TIGR03588 82 TANCALYCGAKVDFVDIDP-DTGNIDEDALEKKLAAAKGKLP-KAIVP---V-DFAGKSVD---MQAIAALAKKHGLKII 152 (380)
T ss_pred HHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHhhcccCCCc-eEEEE---e-CCCCccCC---HHHHHHHHHHcCCEEE
Confidence 9999999999999999975 357899999999998 555 36654 4 67898876 7888999999999999
Q ss_pred EecCCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEeCcHHHHHHHHh
Q 043334 785 IDTAFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 785 ~DeaY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+|++++.. .|++... ... .. ..+.+.||+ |.++. | ..|+++.+++++.+.++.
T Consensus 153 ~D~a~a~g~~~~~~~~---------g~~-~~-----~d~~~~S~~~~K~~~~-~-~GG~v~~~~~~~~~~~~~ 208 (380)
T TIGR03588 153 EDASHALGAEYGGKPV---------GNC-RY-----ADATVFSFHPVKIITT-A-EGGAVTTNDEELAERMRL 208 (380)
T ss_pred EECCCcccCccCCEeC---------CCc-cc-----cceEEEecCCCCcccc-c-CceEEEECCHHHHHHHHH
Confidence 99999743 3444331 110 01 245666765 87764 3 578899887768777664
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=152.77 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=129.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCccc
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKM 733 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~l 733 (903)
...+++.+++..|. + ++++++|+++++.+++ .++++||+|+++.+.|......+.....+- .+.. .|.+
T Consensus 56 ~~~le~~lA~leg~----~-~~v~~~sG~aAi~~~l-~~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~~----~~~~ 124 (364)
T PRK07269 56 RAKLEETLAAIESA----D-YALATSSGMSAIVLAF-SVFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFHF----TYAN 124 (364)
T ss_pred HHHHHHHHHHHhCC----C-eEEEeCCHHHHHHHHH-HHhCCCCEEEEecCCcCchHHHHHHHHhcC-cEEE----EecC
Confidence 45566666666553 2 7999999999999888 467999999999999976555433211000 0110 2446
Q ss_pred CHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 734 TEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 734 d~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
|++++++++++++ ++|++++|+ ||||.+.+ +++|+++|+++|+++|+|++|..-.+. .+ +.
T Consensus 125 d~~~l~~~i~~~T-klV~lesP~-NPtg~~~d---i~~I~~la~~~gi~vvvD~t~~~~~~~-~p---------l~---- 185 (364)
T PRK07269 125 TEEELIAAIEEDT-DIVYIETPT-NPLMVEFD---IEKVAKLAHAKGAKVIVDNTFYSPIYQ-RP---------IE---- 185 (364)
T ss_pred CHHHHHHhcCcCc-eEEEEECCC-CCCCeeeC---HHHHHHHHHHcCCEEEEECCCcccccC-Cc---------hh----
Confidence 8999999998877 599999998 99999885 889999999999999999998432211 11 11
Q ss_pred CCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. +-.++++|++|.++.+|- =.||++++++++.+.+..... ....+....+.+...|
T Consensus 186 ~----gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L 244 (364)
T PRK07269 186 L----GADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGL 244 (364)
T ss_pred h----CCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCC
Confidence 1 246999999999975443 357888877668887765443 2344555555454444
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.5e-13 Score=151.65 Aligned_cols=265 Identities=11% Similarity=0.060 Sum_probs=164.1
Q ss_pred CCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCCCCC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNMSES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|.-... .+|.+.+++.+.+..+..... ..+..+.+++.+++..|. + .++++++++++..
T Consensus 28 ~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~~SGs~A~e 102 (400)
T PTZ00125 28 VEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGY--D---KVLPMNSGAEAGE 102 (400)
T ss_pred CCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhCCCC--C---EEEEeCCcHHHHH
Confidence 45677899876643332 578899999888766433221 134556777777776553 2 5777777777777
Q ss_pred HHHHHhcc----------CCCeEEEcCCCcHHHHHH-HHHcCCEEEE---ecCCCC--CCcccCHHHHHHHhhcCCCcEE
Q 043334 687 KLVLCCIL----------EGGTLCFPAGSNGNYVSA-ARFLKANIVN---IPTESE--VGFKMTEKTLVTILETVKKPWV 750 (903)
Q Consensus 687 ~ll~~l~~----------pGD~Vlv~~P~y~~~~~~-~~~~G~~vv~---v~~~~~--~~f~ld~~~L~~~l~~~~~~~v 750 (903)
.++..... .++.|++.+-+|...... ....+..... .+.... .-...|++++++.++....++|
T Consensus 103 ~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~v 182 (400)
T PTZ00125 103 TALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQDPNVAAF 182 (400)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhCCCCeEEE
Confidence 77765531 346787777766554333 2222221110 011000 0001379999999863333466
Q ss_pred EEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
++..+ |||||.+++ .+.+++|.++|++||+++|+||+|.++.+.+... . .....-.+ + + .++||
T Consensus 183 ~~ep~-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~---~----~~~~~~~p---d-~---~~~sK 247 (400)
T PTZ00125 183 IVEPI-QGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL---A----HDHEGVKP---D-I---VLLGK 247 (400)
T ss_pred EEcCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhh---H----HHhcCCCC---C-E---EEEcc
Confidence 66655 599999996 5569999999999999999999997765555321 0 11111111 1 2 24789
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.++.+++|+||++++++ +++.+..... +.+.+.+.|.++.+.|+.-.. +.+.++..++.+.++++.+
T Consensus 248 ~l~~g~~~ig~v~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~~~l~~i~~--~~~~~~~~~~~~~l~~~l~ 316 (400)
T PTZ00125 248 ALSGGLYPISAVLANDD-VMLVIKPGEHGSTYGGNPLACAVAVEALEVLKE--EKLAENAQRLGEVFRDGLK 316 (400)
T ss_pred cccCCCcCcEEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 99865569999999987 8888765432 566788889888887742111 1234455555555555543
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-12 Score=148.07 Aligned_cols=204 Identities=10% Similarity=0.040 Sum_probs=142.2
Q ss_pred eEEccCCCCCCCC-----cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 617 LIHMDVDQSFLPI-----PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 617 ~IdLs~g~p~~~~-----p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
+..|+.|+++.+. +....+++.+.+..+....|. ....+++.+++++|.+ ++++++|+++++..++.+
T Consensus 25 ~~~~~~~~~~ip~~~~~~~~~~~~a~~~~~~~~~~~~G~--~~~~fe~~lA~~~g~~-----~~v~~~sGt~al~~aL~a 97 (438)
T PRK15407 25 PKPFVPGKSPIPPSGKVIDAKELQNLVDASLDFWLTTGR--FNDAFEKKLAEFLGVR-----YALLVNSGSSANLLAFSA 97 (438)
T ss_pred cccccCCCCCCCcCccCCCHHHHHHHHHHHHhCcccCCh--hHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHH
Confidence 3447888887653 223344444555444444453 2445566666666653 577787777887777776
Q ss_pred h---------ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 692 C---------ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 692 l---------~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+ ++|||+|+++.|+|+.+...+...|++++.++++. ++|.+|++.+++.+++++ ++|+++++. |.
T Consensus 98 l~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd~-~~~~id~~~le~~i~~~t-kaVi~~~~~----G~ 171 (438)
T PRK15407 98 LTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVEL-PTYNIDASLLEAAVSPKT-KAIMIAHTL----GN 171 (438)
T ss_pred HhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHHcCcCC-eEEEEeCCC----CC
Confidence 5 48999999999999999999999999999999875 468899999999998777 478887554 44
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceee
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFG 839 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG 839 (903)
.. ++++|.++|+++|++||+|++++.. .|++... ..+ ..+.+.||. |.+. +| .-|
T Consensus 172 p~---dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~---------G~~--------gd~~~fSf~~~k~~~-~g-eGG 229 (438)
T PRK15407 172 PF---DLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMT---------GTF--------GDIATLSFYPAHHIT-MG-EGG 229 (438)
T ss_pred hh---hHHHHHHHHHHCCCEEEEECccchhhhcCCeee---------ecc--------CceEEEeCCCCCCcc-cc-Cce
Confidence 33 5899999999999999999999642 3443321 111 134566664 5553 23 359
Q ss_pred EEEeCcHHHHHHHHhC
Q 043334 840 FLVLNHPQLVDAFSSF 855 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~ 855 (903)
+++++++++.+.++.+
T Consensus 230 ~l~t~d~~l~~~~~~~ 245 (438)
T PRK15407 230 AVFTNDPLLKKIIESF 245 (438)
T ss_pred EEEECCHHHHHHHHHH
Confidence 9999988777665543
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-13 Score=144.29 Aligned_cols=268 Identities=12% Similarity=0.038 Sum_probs=185.5
Q ss_pred CCHHHHHHHHhhhhccCCCCCeEEccCCCCC----CC-CcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhhc
Q 043334 596 RSAISVLNSAELSITETPNSGLIHMDVDQSF----LP-IPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIKSNF 665 (903)
Q Consensus 596 ~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~----~~-~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~~ 665 (903)
+.+|--+.+|-+ ++..+..|||++|.-- -| .-+.|.++-.+... +|.+..|.+++.+..++.+-. .
T Consensus 36 pDpILGVTeAfk---~D~n~~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~~ldKEYlpI~Gl~eF~k~sakLa~G-~ 111 (427)
T KOG1411|consen 36 PDPILGVTEAFK---KDPNPKKINLGVGAYRDDNGKPYVLPSVRKAEQQLASLSLDKEYLPITGLAEFNKLSAKLALG-D 111 (427)
T ss_pred CCCcccHHHHHh---cCCCcceeeecccceecCCCCeeeeHHHHHHHHHHhhhcccchhccccchHHHHHHHHHHhhc-C
Confidence 344544444433 3677889999998532 11 34555555443322 477889999999888877632 1
Q ss_pred CCCCCCCCcEEec--CchHHHHHHHHH--HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 666 GFPIDINAEFIYA--DCSQSLFNKLVL--CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 666 G~~~~pe~~I~vt--~Gs~~al~~ll~--~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
+.+.-.+.+|+.+ -.+++++..... +..-++..|.+|+|+|+++...++.+|+.+..+..-....-.+|.+.+-+.
T Consensus 112 ~s~~ik~~Ri~tvQ~lSGTGaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~led 191 (427)
T KOG1411|consen 112 NSPVIKEKRIVTVQTLSGTGALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLED 191 (427)
T ss_pred CchhhhccceeEEEeccCcchhhHHHHHHHhhccccceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHH
Confidence 2222222244433 233444443222 223468899999999999999999999999888765444556888888777
Q ss_pred hhcCCCcEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 742 LETVKKPWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 742 l~~~~~~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
+.......+++++-+ |||||.--+.|+|++|.++.++.+.+-+.|-+|.++.-+.-....++++-++. . ...
T Consensus 192 l~~~p~gs~ilLhaCaHNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~---~----g~~ 264 (427)
T KOG1411|consen 192 LGEAPEGSIILLHACAHNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVE---D----GHE 264 (427)
T ss_pred HhcCCCCcEEEeehhhcCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHH---c----CCc
Confidence 776655578888888 99999999999999999999999999999999987765443322233332222 2 147
Q ss_pred eEEEccCchhcccccceeeE--EEeCcHHHHHHHHh----CCC--CCCCcHHHHHHHHHHHh
Q 043334 821 VSLLGGLSLKMLTGALKFGF--LVLNHPQLVDAFSS----FPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~--lv~~~~~li~~l~~----~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+.++.||+|..|+.|-|+|. +++.+.+...++.+ +.. +++|+.-...++...|.
T Consensus 265 ~~laQSyAKNMGLYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~ 326 (427)
T KOG1411|consen 265 ILLAQSYAKNMGLYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILS 326 (427)
T ss_pred eEeehhhhhhcchhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccC
Confidence 99999999999999999995 46666545555443 222 78888888888888884
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=144.90 Aligned_cols=104 Identities=21% Similarity=0.326 Sum_probs=87.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+|.+|||+|||||.+++.+++..+..+|+|+|+|+.|++.|+++....+. .+++|+++|+.+++
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~----------------~~i~fv~~dAe~LP 114 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV----------------QNVEFVVGDAENLP 114 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc----------------cceEEEEechhhCC
Confidence 68999999999999999999999888999999999999999999976654 24999999999998
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.++. +||+|.+. +..+ ....+..+++|++|+|||||++++
T Consensus 115 f~D~-sFD~vt~~----------fglr----------------------------nv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 115 FPDN-SFDAVTIS----------FGLR----------------------------NVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CCCC-ccCEEEee----------ehhh----------------------------cCCCHHHHHHHHHHhhcCCeEEEE
Confidence 7654 99999742 0111 111255899999999999999888
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-12 Score=143.83 Aligned_cols=229 Identities=13% Similarity=0.089 Sum_probs=153.2
Q ss_pred CCeEEccCCC-CCCCCcHHHHHHHHHHHHccC-------C-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecC
Q 043334 615 SGLIHMDVDQ-SFLPIPSLVKAAIFESFARQN-------M-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYAD 679 (903)
Q Consensus 615 ~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~-------~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~ 679 (903)
...++|+.++ -++...+.+.+++.+++.+|. . ..|..+..+.+++.+++.+|.+. .+++++
T Consensus 4 ~~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~----~l~~~s 79 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE----AFIVPS 79 (370)
T ss_pred CceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe----EEEECC
Confidence 4578887654 456677788888888876652 1 12445677888999999888742 488999
Q ss_pred chHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcEEEEEC
Q 043334 680 CSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPWVYISG 754 (903)
Q Consensus 680 Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~vil~~ 754 (903)
|+...+. +...+.++||.|++..-.|......++......+.++. .|++.+++.++. .++.+|++++
T Consensus 80 G~~a~~~-~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~v~~ 151 (370)
T PRK05937 80 GYMANLG-LCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRH-------NDLDHLESLLESCRQRSFGRIFIFVCS 151 (370)
T ss_pred hHHHHHH-HHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecC-------CCHHHHHHHHHhhhccCCCcEEEEEec
Confidence 9876654 45556678898888888888887777766544444432 578999988863 2334677899
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
++ |+||.+.+ +++|.++|+++|+++++||+|+.-.++.... .....+ +.. +..+.+.||||.+|..
T Consensus 152 v~-s~~G~i~p---l~eI~~l~~~~~~~livDea~~~G~~g~~g~------g~~~~~-~~~---~~~~~~~tlsK~~g~~ 217 (370)
T PRK05937 152 VY-SFKGTLAP---LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK------GFCHSL-GYE---NFYAVLVTYSKALGSM 217 (370)
T ss_pred CC-CCCCCccC---HHHHHHHHHHcCCEEEEECCccccccCCCCC------chHHhh-CCC---CCcEEEEechhhhhcC
Confidence 98 99999999 7888889999999999999997533332211 111111 111 2346789999999977
Q ss_pred cceeeEEEeCcHHHHHHHHhCC-C---CCCCcHHHHHHHHHHH
Q 043334 835 ALKFGFLVLNHPQLVDAFSSFP-G---LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~~~-~---~~~~s~~~Q~aa~~~L 873 (903)
| +.+++.++ +.+.+.... . ..+.+.+...++..++
T Consensus 218 G---~~vl~~~~-~~~~~~~~~~~~~~s~~~~~~~~~a~~aal 256 (370)
T PRK05937 218 G---AALLSSSE-VKQDLMLNSPPLRYSTGLPPHLLISIQVAY 256 (370)
T ss_pred c---eEEEcCHH-HHHHHHHhCCCCeecCCCCHHHHHHHHHHH
Confidence 7 33455554 555554321 1 3344555555554555
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=138.42 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=103.0
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
|...+.+.+..... .++.+|||+|||+|.+++.++...++.+|+|+|+|+.|++.+++|++.+++
T Consensus 27 ~~~~~~d~i~~~~~--~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------- 91 (181)
T TIGR00138 27 WERHILDSLKLLEY--LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------- 91 (181)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-------------
Confidence 44455555433222 347899999999999999999887778999999999999999999988876
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
++++++++|+.++.. .++||+|++|. + .. +..+
T Consensus 92 ---~~i~~i~~d~~~~~~--~~~fD~I~s~~-~------~~-----------------------------------~~~~ 124 (181)
T TIGR00138 92 ---NNVEIVNGRAEDFQH--EEQFDVITSRA-L------AS-----------------------------------LNVL 124 (181)
T ss_pred ---CCeEEEecchhhccc--cCCccEEEehh-h------hC-----------------------------------HHHH
Confidence 479999999988632 34899999753 0 00 2256
Q ss_pred HHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHH---CCCeEEEE
Q 043334 173 VEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFER---RGFRVDKL 213 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~---~gf~~~~~ 213 (903)
++.+.++|+|||.+++.++.....+. ..+.++ .||+.+..
T Consensus 125 ~~~~~~~LkpgG~lvi~~~~~~~~~~-~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 125 LELTLNLLKVGGYFLAYKGKKYLDEI-EEAKRKCQVLGVEPLEV 167 (181)
T ss_pred HHHHHHhcCCCCEEEEEcCCCcHHHH-HHHHHhhhhcCceEeec
Confidence 78889999999999998876554443 334444 58887665
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.9e-13 Score=145.57 Aligned_cols=166 Identities=15% Similarity=0.123 Sum_probs=114.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-ccccCCCCcchhhhcccCCcEEEEE-ccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN-ALDEKGQPIYDAEKKTLLDRVEFHE-SDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~-gl~~~~~~~~~~~~~~~~~~v~~~~-gDl~~ 107 (903)
++.++||||||+|.+...++.+.++++++|+|+|+.+++.|++|+..| ++ .++++++. .|...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l---------------~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL---------------NGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC---------------cCcEEEEEccchhh
Confidence 457999999999999999888888899999999999999999999999 67 35788864 33332
Q ss_pred ccc---CCCCceeEEEECCCCCCCCCccchh--hHH---hhhhhhhhhhhcccccc-ccccccccccHHHHHHHHHHHhh
Q 043334 108 YCR---DHDIQLERIVGCIPQILNPNPDAMS--KII---TENASEEFLYSLSNYCA-LQGFVEDQFGLGLIARAVEEGIG 178 (903)
Q Consensus 108 ~~~---~~~~~fD~Iv~NpPy~~~~~~~~l~--~~~---~~~~~~~~~~~l~~~~a-l~~~v~~~~g~~~~~~~l~~~~~ 178 (903)
... ...++||+|+|||||+......... ... ..+.+.. .. .+..+ ....+...+...++.+++++...
T Consensus 179 i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~--~~-l~f~g~~~EL~~~GGe~~fi~~mi~eS~~ 255 (321)
T PRK11727 179 IFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKK--KV-LNFGGQQAELWCEGGEVAFIKRMIEESKA 255 (321)
T ss_pred hhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCc--cc-cCCcchhhheeeCCcEeeeehHhhHHHHH
Confidence 221 1234899999999999765432111 000 0000000 00 00000 00001112235778899999999
Q ss_pred cccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 179 VIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 179 ~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.++..|.+...++.......+.+.+++.|...+.+
T Consensus 256 ~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~ 290 (321)
T PRK11727 256 FAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKT 290 (321)
T ss_pred HHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEE
Confidence 99999999999988888888889999999865554
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=145.44 Aligned_cols=261 Identities=10% Similarity=0.046 Sum_probs=168.8
Q ss_pred CCCCCeEEccCC--CCCCCCcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLPIPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
..|...+|+..| ...++..+.+++++.+.+.++.. ..-..++++++++.+.. .. +..++++++++++...
T Consensus 26 ~dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~----~~--~~~~~~~~SGseA~~~ 99 (375)
T PRK04260 26 TDGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSPNLYLNSLQEEVAQKLIG----DK--DYLAFFCNSGAEANEA 99 (375)
T ss_pred CCCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHhc----Cc--CCEEEEcCccHHHHHH
Confidence 456778999665 34455677899999998865321 12234556666665532 11 2246788888888887
Q ss_pred HHHHhc--cCCCeEEEcCCCcHH-HHHHHHHcCCEEEE------ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 688 LVLCCI--LEGGTLCFPAGSNGN-YVSAARFLKANIVN------IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 688 ll~~l~--~pGD~Vlv~~P~y~~-~~~~~~~~G~~vv~------v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
++.... ..++.|++.+.+|-. ........|.+... ++......+ .|++.+++.+.++. .+|++.+++ |
T Consensus 100 Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dl~~l~~~l~~~~-a~vi~e~v~-~ 176 (375)
T PRK04260 100 AIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-NDLNSVKALVNKNT-AAVMLELVQ-G 176 (375)
T ss_pred HHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-CCHHHHHHhcCCCe-EEEEECCeE-C
Confidence 666542 345778888887764 33333333322110 000000011 37899998886544 478888887 9
Q ss_pred CcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
++|.+. +.+.+++|.++|+++|+++|+||+|.++...+..+ . .....-.| + +.||||.++ +|+|
T Consensus 177 ~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~---~----~~~~~~~p---d----i~t~sK~l~-~G~~ 241 (375)
T PRK04260 177 ESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY---A----FEHYGIEP---D----IFTLAKGLA-NGVP 241 (375)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh---h----hHhhCCCC---C----EEEeccccc-CCcc
Confidence 999875 46789999999999999999999997754444321 1 11111222 2 348999997 8999
Q ss_pred eeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 838 FGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+||++++++ +.+.+.... .+.+.+.+.|.++.++|+.-. .+++++++++..+.+++.+.
T Consensus 242 ig~~~~~~~-~~~~~~~~~~~~t~~~~~~~~~aa~a~l~~~~-----~~~~~~~~~~~~~~~~~~l~ 302 (375)
T PRK04260 242 VGAMLAKSS-LGGAFGYGSHGSTFGGNKLSMAAASATLDIML-----TAGFLEQALENGNYLQEQLQ 302 (375)
T ss_pred eEEEEEcHH-HHhhcCCCCCCCCCCcCHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHH
Confidence 999999987 888886532 366778899999999994211 12556677777777776653
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=150.27 Aligned_cols=135 Identities=21% Similarity=0.167 Sum_probs=106.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||||.+++.++.. +.+++|+|+|+.|++.|+.|++.+++ .++.+.++|+.+.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~----------------~~i~~~~~D~~~l 242 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGI----------------EDFFVKRGDATKL 242 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCC----------------CCCeEEecchhcC
Confidence 35789999999999999987765 78999999999999999999988887 2488999999987
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|++||||....... .....+++..+++++.++|||||++++
T Consensus 243 ~~~~-~~~D~Iv~dPPyg~~~~~~-----------------------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 243 PLSS-ESVDAIATDPPYGRSTTAA-----------------------------GDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred Cccc-CCCCEEEECCCCcCccccc-----------------------------CCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 5443 4899999999997532211 011123456899999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.++..... .++++++|| +...+.
T Consensus 293 ~~~~~~~~---~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 293 AVPTRIDL---ESLAEDAFR-VVKRFE 315 (329)
T ss_pred EEcCCCCH---HHHHhhcCc-chheee
Confidence 88766443 357899999 766643
|
This family is found exclusively in the Archaea. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=146.29 Aligned_cols=132 Identities=21% Similarity=0.338 Sum_probs=84.0
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~ 90 (903)
-|...+.+.+.. .++.+|||+|||||.++..+++..+ ..+|+|+|+|+.|++.|+++....+.
T Consensus 34 ~wr~~~~~~~~~-----~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~----------- 97 (233)
T PF01209_consen 34 RWRRKLIKLLGL-----RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL----------- 97 (233)
T ss_dssp ---SHHHHHHT-------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHhccCC-----CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-----------
Confidence 355544444332 3578999999999999999998754 57999999999999999999987765
Q ss_pred hcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 91 KKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 91 ~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
.+++++++|..+++.++ ++||+|++.-- ++. .....
T Consensus 98 -----~~i~~v~~da~~lp~~d-~sfD~v~~~fg-------------lrn-------------------------~~d~~ 133 (233)
T PF01209_consen 98 -----QNIEFVQGDAEDLPFPD-NSFDAVTCSFG-------------LRN-------------------------FPDRE 133 (233)
T ss_dssp ------SEEEEE-BTTB--S-T-T-EEEEEEES--------------GGG--------------------------SSHH
T ss_pred -----CCeeEEEcCHHHhcCCC-CceeEEEHHhh-------------HHh-------------------------hCCHH
Confidence 48999999999987665 49999984211 110 01134
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHH
Q 043334 171 RAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLF 203 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll 203 (903)
+.+++++|+|||||++++.....+....++.+.
T Consensus 134 ~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred HHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 789999999999999987444433333434344
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.8e-12 Score=141.24 Aligned_cols=185 Identities=11% Similarity=0.069 Sum_probs=133.9
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHHHHHH
Q 043334 635 AAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNYVSAA 713 (903)
Q Consensus 635 ~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~~~~~ 713 (903)
+++.+.+.+... +..+....+++.+++.+|.+ ++++++|+++++..++.++ +.+||+|+++.++|..+...+
T Consensus 3 ~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~-----~~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~ 75 (352)
T cd00616 3 EAVEEVLDSGWL--TLGPKVREFEKAFAEYLGVK-----YAVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAI 75 (352)
T ss_pred HHHHHHHHcCCc--cCCHHHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHH
Confidence 345555544322 22234556666666666742 4667777888999989888 689999999999999999999
Q ss_pred HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-
Q 043334 714 RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGL- 792 (903)
Q Consensus 714 ~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l- 792 (903)
...|++++.+++++ +++.+|++.+++.+++++ ++|+++ ||+|.+.+ +++|.++|+++|+++|+|++++..
T Consensus 76 ~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~-~~v~~~----~~~G~~~~---~~~i~~l~~~~~i~li~D~a~~~g~ 146 (352)
T cd00616 76 LLLGATPVFVDIDP-DTYNIDPELIEAAITPRT-KAIIPV----HLYGNPAD---MDAIMAIAKRHGLPVIEDAAQALGA 146 (352)
T ss_pred HHcCCeEEEEecCC-CcCCcCHHHHHHhcCcCC-eEEEEE----CCCCCcCC---HHHHHHHHHHcCCeEEEECCCCCCC
Confidence 99999999999864 468899999999987666 467664 57898877 777888899999999999999632
Q ss_pred ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEeCcHHHHHHHHh
Q 043334 793 EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 793 ~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
.+.+.. +.. ...+.+.||+ |.+ ++.+.|+++++++++.+.+..
T Consensus 147 ~~~~~~------------~~~-----~~d~~~~S~~~~K~~--~~~~gg~~~~~~~~~~~~~~~ 191 (352)
T cd00616 147 TYKGRK------------VGT-----FGDAGAFSFHPTKNL--TTGEGGAVVTNDEELAERARL 191 (352)
T ss_pred eECCEE------------ccc-----CcceeEEcCCCCCCC--cccCceEEEECCHHHHHHHHH
Confidence 222111 111 1245677776 877 444679999987557776654
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=151.87 Aligned_cols=207 Identities=14% Similarity=0.136 Sum_probs=156.9
Q ss_pred EccCCCCCCCCcHHHHHHHHHH--HHccC------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH-
Q 043334 619 HMDVDQSFLPIPSLVKAAIFES--FARQN------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV- 689 (903)
Q Consensus 619 dLs~g~p~~~~p~~v~~al~~a--l~~y~------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll- 689 (903)
-++.|++++..|+.+.+.+.+. ...|. ..+|..+++.++++++++.+|++.. .+..++|+.+.+..+.
T Consensus 72 ~~g~G~~~~~~~p~i~~~~~~~~~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~---~l~~~~GA~a~~~~l~~ 148 (481)
T PRK04366 72 FYPLGSCTMKYNPKINEKVARLPGFAELHPLQPEETVQGALELMYELQEWLKEITGMDAV---TLQPAAGAHGELTGLLM 148 (481)
T ss_pred eecCcccCCCCCHHHHHHHHhCcchhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCce---EEEeCcHHHHHHHHHHH
Confidence 3678888888888888888765 23322 3567889999999999999998632 6777788777765432
Q ss_pred -H-HhccCCC----eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 690 -L-CCILEGG----TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 690 -~-~l~~pGD----~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
. .++++|| +|++++|+|+.|...++..|++++.++++. +|.+|++++++.+++++ ++|++++| ||||.+
T Consensus 149 ~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~--~~~~D~e~L~~~i~~~t-~~V~v~~P--n~tG~~ 223 (481)
T PRK04366 149 IRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNE--DGLVDLEALKAAVGEDT-AALMLTNP--NTLGLF 223 (481)
T ss_pred HHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCC--CCCcCHHHHHhhcccCC-eEEEEeCC--CCcccc
Confidence 2 3467777 999999999999999999999999999853 57899999999998777 48999998 499954
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc----cceee
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG----ALKFG 839 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~----GlRiG 839 (903)
..++++|+++|+++|+++++|.++..-..+... .... +..++++|..|.++.| |--+|
T Consensus 224 --~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~------------~~~~----GaD~~~~~~hK~l~~P~g~Ggp~~G 285 (481)
T PRK04366 224 --ERNILEIAEIVHEAGGLLYYDGANLNAILGKAR------------PGDM----GFDVVHLNLHKTFSTPHGGGGPGSG 285 (481)
T ss_pred --chHHHHHHHHHHHcCCEEEEEecChhhhcccCC------------cccc----CCCEEEEechhhcCCCCCCCCCCee
Confidence 357999999999999999999998311111000 0111 3578999999998744 44578
Q ss_pred EEEeCcHHHHHHH
Q 043334 840 FLVLNHPQLVDAF 852 (903)
Q Consensus 840 ~lv~~~~~li~~l 852 (903)
++.+.++ +.+.+
T Consensus 286 ~l~~~~~-~~~~l 297 (481)
T PRK04366 286 PVGVKEE-LAPFL 297 (481)
T ss_pred eeeehhh-hHhhC
Confidence 8888776 66655
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=144.30 Aligned_cols=264 Identities=13% Similarity=0.084 Sum_probs=168.5
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS--ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~--~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|. ..++ ..+.+.+++.+.+.+.... ....+....+++.+.+.. +.+ .++++++++++..
T Consensus 12 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~--~~~---~v~f~~sGseA~e 86 (382)
T PLN00144 12 VEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSNVYHTIPQVELAKRLVASS--FAD---RVFFCNSGTEANE 86 (382)
T ss_pred CCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHhcC--CCC---eEEEeCCcHHHHH
Confidence 4677889986553 2333 4678888888887653221 122444566777776643 222 7999998888888
Q ss_pred HHHHHhcc---------C------CCeEEEcCCCcHHHHHHHHHcCCEE-E---EecCCCCCCc--ccCHHHHHHHhhcC
Q 043334 687 KLVLCCIL---------E------GGTLCFPAGSNGNYVSAARFLKANI-V---NIPTESEVGF--KMTEKTLVTILETV 745 (903)
Q Consensus 687 ~ll~~l~~---------p------GD~Vlv~~P~y~~~~~~~~~~G~~v-v---~v~~~~~~~f--~ld~~~L~~~l~~~ 745 (903)
.++..... + ..+|+....+|-+....+....... . ..|......+ ..|++.+++.+...
T Consensus 87 ~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 166 (382)
T PLN00144 87 AAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQKG 166 (382)
T ss_pred HHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCCC
Confidence 77765421 0 1357777777765443332222111 0 0111110000 02689999888644
Q ss_pred CCcEEEEECCCCCCcccCCCHHH--HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 746 KKPWVYISGPTINPTGLLYSNKE--IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~s~ee--l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
. ...++..|.||| |.+++.+. +++|.++|++||+++|+||+|.++...+... . .....-.| |
T Consensus 167 ~-~aavi~eP~q~~-gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~---~----~~~~~~~P---D---- 230 (382)
T PLN00144 167 K-TAAVFVEPVQGE-GGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLW---A----HEAYGVEP---D---- 230 (382)
T ss_pred C-eEEEEEccccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHh---h----hhhcCCCC---C----
Confidence 4 356677788899 65665445 9999999999999999999998776555431 0 11111122 2
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+.||||.++ +|+|+||++++++ +++.+.... .+.+.+++.+.++.+.|+.-+. ..+.+++.++.+.++++.+.
T Consensus 231 i~t~sK~l~-~G~pig~v~~~~~-~~~~~~~~~~~~T~~~~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~ 305 (382)
T PLN00144 231 IMTLAKPLA-GGLPIGAVLVTEK-VASAINPGDHGSTFAGGPLVCNAALAVLDKISK--PGFLASVAKKGEYLRELLRR 305 (382)
T ss_pred EEEeccccc-CCcceEEEEEcHH-HHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHH
Confidence 889999997 8999999999987 888876432 3677888999999866632111 34667788888887665543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-13 Score=139.30 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=102.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc-ccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL-LAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl-~~~ 108 (903)
++.+|||+|||+|..+..+++..++.+|+|+|+|++|++.|++++..+++ .++.++++|+ ..+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~----------------~~v~~~~~d~~~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL----------------TNLRLLCGDAVEVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC----------------CCEEEEecCHHHHH
Confidence 45799999999999999999988888999999999999999999987765 4799999999 544
Q ss_pred cc-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CR-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.. ...++||+|++|.|.......+... ......+++++.++|||||.++
T Consensus 104 ~~~~~~~~~D~V~~~~~~p~~~~~~~~~------------------------------~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 104 LDMFPDGSLDRIYLNFPDPWPKKRHHKR------------------------------RLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred HHHcCccccceEEEECCCCCCCcccccc------------------------------ccCCHHHHHHHHHHcCCCCEEE
Confidence 31 1234899999875432111101000 0012378999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVD 211 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~ 211 (903)
+..........+.+.+++.|+...
T Consensus 154 i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 154 FATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEcCCHHHHHHHHHHHHhCccccc
Confidence 987766656666778888887654
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=141.92 Aligned_cols=233 Identities=8% Similarity=0.035 Sum_probs=152.5
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc-CCCC-CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ-NMSE-SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y-~~~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..| ...++ ..|.+.+++.+.+.+. .... ...+....+++.+.+..+. + .++++++++++..
T Consensus 32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~----~-~~~f~~SGseA~e 106 (397)
T TIGR03246 32 QQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFA----D-KVFFCNSGAEANE 106 (397)
T ss_pred CCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC----C-EEEEeCCcHHHHH
Confidence 467789999765 34444 5788999998888763 2111 2345567788888876542 2 6888888888888
Q ss_pred HHHHHhc-------cCC-CeEEEcCCCcHH-HHHHHHHcCCE------------EEEecCCCCCCcccCHHHHHHHhhcC
Q 043334 687 KLVLCCI-------LEG-GTLCFPAGSNGN-YVSAARFLKAN------------IVNIPTESEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 687 ~ll~~l~-------~pG-D~Vlv~~P~y~~-~~~~~~~~G~~------------vv~v~~~~~~~f~ld~~~L~~~l~~~ 745 (903)
.++.... .+| +.|+..+-+|-+ ........|.. +..+|. .|++.+++.+.++
T Consensus 107 ~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 179 (397)
T TIGR03246 107 AALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPY-------NDLAAAKALISDK 179 (397)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCC-------CCHHHHHHHhccC
Confidence 7777551 122 456665555544 33333333321 111211 3789999998755
Q ss_pred CCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
. .+|++. |.+++.|.+. +.+.+++|.++|++||+++|.||+|.++-..|... . .....-.+ . +
T Consensus 180 ~-aavi~E-pi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~---a----~~~~gv~p-----D--i 243 (397)
T TIGR03246 180 T-CAVIVE-PIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY---A----YMHYGVTP-----D--I 243 (397)
T ss_pred e-EEEEEe-cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccch---h----hhhcCCCC-----C--E
Confidence 4 355555 6524555443 89999999999999999999999997764444321 1 11111112 1 2
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
-+|||.++ .|+|+||++++++ +++.+.... .+.+.+++.+.++.+.|+
T Consensus 244 ~t~~K~lg-gG~pigav~~~~~-i~~~~~~~~~~~t~~~~p~~~aaa~a~l~ 293 (397)
T TIGR03246 244 LTSAKALG-GGFPIGAMLTTTE-IAAHLKVGTHGTTYGGNPLACAVAGKVLD 293 (397)
T ss_pred EEeehhhh-CCcceeEEEEcHH-HHHhccCCCcCCCCCCCHHHHHHHHHHHH
Confidence 38999997 7999999999887 888886542 255677888988888885
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-11 Score=137.62 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=145.9
Q ss_pred cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHH
Q 043334 630 PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGN 708 (903)
Q Consensus 630 p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~ 708 (903)
....++++.+.+.+...+.|. ...++++.++++.|++.. |.+.|| +.++.+++.++ +.|||+|+++..+|..
T Consensus 14 ~~~e~~~v~~vl~sg~i~~G~--~v~~FE~~~ae~~G~k~a----va~~sg-T~AL~laL~al~ig~GDeVI~ps~TfvA 86 (374)
T COG0399 14 GEEELAAVQEVLKSGWLTGGP--FVRRFEQAFAEYLGVKYA----VAVSSG-TAALHLALLALAIGPGDEVIVPSFTFVA 86 (374)
T ss_pred chHHHHHHHHHHHcCCeecCh--HHHHHHHHHHHHhCCCeE----EEecCh-HHHHHHHHHhcCCCCCCEEEecCCchHH
Confidence 456678888888776555543 456677788888888744 555555 55666666643 6999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecC
Q 043334 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTA 788 (903)
Q Consensus 709 ~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~Dea 788 (903)
..+.+...|++++.+++++ +.|++|++.++++++++++ +|+..+-. |.... +++|.++|++||++||+|-+
T Consensus 87 Tan~i~~~Ga~PVFvDid~-~T~nid~~~ie~aIt~~tK-AIipVhl~----G~~~d---m~~i~~la~~~~l~vIEDaA 157 (374)
T COG0399 87 TANAVLLVGAKPVFVDIDP-DTLNIDPDLIEAAITPRTK-AIIPVHLA----GQPCD---MDAIMALAKRHGLPVIEDAA 157 (374)
T ss_pred HHHHHHHcCCeEEEEecCC-cccCCCHHHHHHHcccCCe-EEEEehhc----cCCCC---HHHHHHHHHHcCCeEEEEcc
Confidence 9999999999999999987 5799999999999999875 77776555 66665 88899999999999999999
Q ss_pred CCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 789 FSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 789 Y~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
.+. -.|.|... ..+ -.+.+.|| +|.++ +| --|.++++++++.++++.++
T Consensus 158 qa~Ga~y~gk~v---------Gt~--------Gd~~~fSF~~~K~it-tg-EGGav~tnd~ela~k~~~lr 209 (374)
T COG0399 158 QAHGATYKGKKV---------GSF--------GDIGAFSFHATKNLT-TG-EGGAVVTNDEELAEKARSLR 209 (374)
T ss_pred hhccCeecCccc---------ccc--------cceEEEEecCCCCcc-cc-CceEEEeCCHHHHHHHHHHH
Confidence 864 34555542 111 23444554 68876 44 67999999998988887653
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-11 Score=140.51 Aligned_cols=268 Identities=10% Similarity=0.030 Sum_probs=164.7
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..| ...++ .++.+.+++.+.+.+... .....+....+++.+.+..+...+ .++++++++++
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~---~v~f~~sGsEA 113 (443)
T PRK08360 37 DIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNP---KVSFGLSGSDA 113 (443)
T ss_pred ECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCC---EEEEcCCHHHH
Confidence 3567788998766 44444 577888888888775322 122345566778878776543323 79999999999
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHH-HHHHHcCC------------EEEEecCCCC--CCcc--------cCHHHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYV-SAARFLKA------------NIVNIPTESE--VGFK--------MTEKTLV 739 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~-~~~~~~G~------------~vv~v~~~~~--~~f~--------ld~~~L~ 739 (903)
...++..... .| ..|+...-+|-+.. ......|. .+..+|.... ..|. -+.+.++
T Consensus 114 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
T PRK08360 114 NDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIK 193 (443)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHH
Confidence 8887765421 22 45666665554432 22222221 1222222110 0010 1234455
Q ss_pred HHhhc---CCCcEEEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 740 TILET---VKKPWVYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 740 ~~l~~---~~~~~vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+.+.. ..+.+.++..|.|||+|.+++ .+.+++|.++|++||+++|+||+|.++.+.+..+ . ....+-.+
T Consensus 194 ~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~---a----~~~~~~~p 266 (443)
T PRK08360 194 EKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWF---A----IEHFGVEP 266 (443)
T ss_pred HHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccch---h----hhhcCCCC
Confidence 55542 122356666688899999887 5579999999999999999999998876655431 1 11111122
Q ss_pred CCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
.++ +|||+++ +|+|+||++++++ +++.+.... .+.+.+...|.++.++|+.-.. +.+.+.+.++-+.
T Consensus 267 ----Dii---tlsK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~~~p~~~aaa~a~l~~l~~--~~l~~~~~~~g~~ 335 (443)
T PRK08360 267 ----DII---TLGKPLG-GGLPISATIGRAE-IMDSLPPLAHAFTLSGNPVASAAALAVIEEIEE--KNLLKRAEKLGNY 335 (443)
T ss_pred ----CEE---Eeccccc-CCceeEEEEEcHH-HHhhhcCCCCCCCCCcCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHH
Confidence 233 6799998 8999999999887 888887543 2666778889999988853111 1233444444444
Q ss_pred HHHHHH
Q 043334 894 LESRSK 899 (903)
Q Consensus 894 y~~Rr~ 899 (903)
++++.+
T Consensus 336 l~~~L~ 341 (443)
T PRK08360 336 TKKRLE 341 (443)
T ss_pred HHHHHH
Confidence 444433
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=141.19 Aligned_cols=128 Identities=27% Similarity=0.370 Sum_probs=95.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||||.+++++++ ++..+|+|+|+||.+++.|++|+.+|+++ ..+..-..+.....
T Consensus 162 ~g~~vlDvGcGSGILaIAa~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~---------------~~~~~~~~~~~~~~ 225 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAK-LGAKKVVGVDIDPQAVEAARENARLNGVE---------------LLVQAKGFLLLEVP 225 (300)
T ss_pred CCCEEEEecCChhHHHHHHHH-cCCceEEEecCCHHHHHHHHHHHHHcCCc---------------hhhhcccccchhhc
Confidence 789999999999999999776 45678999999999999999999999983 11223333333332
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+||+|. ..+ .+..+..++.+.|||||++++.
T Consensus 226 ~--~~~~DvIVANI-----------LA~------------------------------vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 226 E--NGPFDVIVANI-----------LAE------------------------------VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred c--cCcccEEEehh-----------hHH------------------------------HHHHHHHHHHHHcCCCceEEEE
Confidence 2 23899999882 111 1337889999999999999985
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
---......+.+.+.+.||.+......
T Consensus 263 GIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 263 GILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred eehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 433333455567888899999887544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=133.45 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=99.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..++.+|+|+|+|+.+++.|++|+..+++ .+++++++|.....
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~----------------~~i~~~~~d~~~~~ 94 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC----------------GNIDIIPGEAPIEL 94 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC----------------CCeEEEecCchhhc
Confidence 57899999999999999999988888999999999999999999987776 36999999975432
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. ++||+|+++-.. . .+..+++.+.+.|+|||++++.
T Consensus 95 -~--~~~D~v~~~~~~------~-----------------------------------~~~~~l~~~~~~Lk~gG~lv~~ 130 (187)
T PRK08287 95 -P--GKADAIFIGGSG------G-----------------------------------NLTAIIDWSLAHLHPGGRLVLT 130 (187)
T ss_pred -C--cCCCEEEECCCc------c-----------------------------------CHHHHHHHHHHhcCCCeEEEEE
Confidence 2 379999854110 0 0226788899999999999987
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.........+.+++++.||...+..
T Consensus 131 ~~~~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 131 FILLENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred EecHhhHHHHHHHHHHCCCCcceEE
Confidence 6555555666789999999766653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=135.09 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=84.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+++.. ++.+|+|+|+++.+++.|++++...++ ++++++++|..+.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~ 108 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL----------------HNVELVHGNAMEL 108 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC----------------CceEEEEechhcC
Confidence 57899999999999999999876 457999999999999999999876655 4799999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++......++ +..+++++.++|+|||.+++
T Consensus 109 ~~~~-~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 109 PFDD-NSFDYVTIGFGLRNVPD--------------------------------------YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCC-CCccEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCeEEEE
Confidence 5433 48999987533221110 22679999999999999987
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 150 ~~ 151 (231)
T TIGR02752 150 LE 151 (231)
T ss_pred EE
Confidence 54
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-13 Score=131.89 Aligned_cols=109 Identities=25% Similarity=0.373 Sum_probs=87.5
Q ss_pred CCCeEEEeCCccCHHHHHHH-HHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIA-EKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la-~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..++ +..++.+++|+|+|++|++.|+++++.+++ ++++|.++|+.++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~----------------~ni~~~~~d~~~l 66 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL----------------DNIEFIQGDIEDL 66 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS----------------TTEEEEESBTTCG
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc----------------cccceEEeehhcc
Confidence 57899999999999999999 456788999999999999999999988887 4899999999995
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
...-.++||+|+++.++.... ....+++++.+.|+++|.+++
T Consensus 67 ~~~~~~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 67 PQELEEKFDIIISNGVLHHFP--------------------------------------DPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp CGCSSTTEEEEEEESTGGGTS--------------------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccCCCeeEEEEcCchhhcc--------------------------------------CHHHHHHHHHHHcCCCcEEEE
Confidence 421114899999876653111 022679999999999999998
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
....
T Consensus 109 ~~~~ 112 (152)
T PF13847_consen 109 SDPN 112 (152)
T ss_dssp EEEE
T ss_pred EECC
Confidence 6554
|
... |
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=147.76 Aligned_cols=156 Identities=10% Similarity=0.089 Sum_probs=121.7
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHH----HHHHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYV----SAARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~----~~~~~~G~~vv~v~~~~~ 728 (903)
....+++.+++.+|.+ ..++++++++++..++.++++|||+|+++.++|.... ..+...|++++.++..
T Consensus 64 ~~~~le~~lA~l~g~~-----~al~~~SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-- 136 (427)
T PRK05994 64 TNAVLEERVAALEGGT-----AALAVASGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADAD-- 136 (427)
T ss_pred cHHHHHHHHHHHhCCC-----cEEEEcCHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECCC--
Confidence 4667888888887764 2455566677777888889999999999999998643 3467789999998752
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++.+++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|+.-. ...+ +
T Consensus 137 -----d~~~l~~ai~~~t-klV~vesp~-NptG~v~d---l~~I~~la~~~gi~livD~a~a~~~-~~~p---------l 196 (427)
T PRK05994 137 -----DPASFERAITPRT-KAIFIESIA-NPGGTVTD---IAAIAEVAHRAGLPLIVDNTLASPY-LIRP---------I 196 (427)
T ss_pred -----CHHHHHHhcCcCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCccccc-cCCc---------c
Confidence 6889999998777 599999998 99999998 7889999999999999999995211 1111 1
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
. . +-.+++.|++|.+|.+|-.+|.+++
T Consensus 197 ---~-~----gaDivv~S~tK~lgg~~~~~gG~v~ 223 (427)
T PRK05994 197 ---E-H----GADIVVHSLTKFLGGHGNSMGGIIV 223 (427)
T ss_pred ---c-c----CCcEEEEcCccccCCCCCcEEEEEE
Confidence 1 1 2468999999999888877886665
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=141.00 Aligned_cols=209 Identities=16% Similarity=0.178 Sum_probs=163.0
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCC--CCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMS--ESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~--~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.+++.|+.+.... .|..+.+++.+.+..|..+ +|. .+..++.++.+++..|.+.. + +|++|.|++++
T Consensus 20 ~~~~vylD~aa~~~-~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~-~-eIvft~~tT~a 96 (405)
T COG0520 20 GKPLVYLDNAATSQ-KPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSS-D-EIVFTRGTTEA 96 (405)
T ss_pred CCCeEEecCccccc-CCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCC-C-eEEEeCChhHH
Confidence 56788888776654 7889999999887655432 221 33556777888888887741 2 89999999999
Q ss_pred HHHHHHHh---ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 685 FNKLVLCC---ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 685 l~~ll~~l---~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
++.+..++ +.+||+|++.+-.|.. +...++..|++++.+|+++ +..++.+.++..++++++ +|.++.-+
T Consensus 97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~--~g~~~~~~~~~~i~~~Tk-lvais~vS- 172 (405)
T COG0520 97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDD--DGLLDLDALEKLITPKTK-LVALSHVS- 172 (405)
T ss_pred HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCC--CCCcCHHHHHHhcCCCce-EEEEECcc-
Confidence 99999999 6999999999887664 5566677899999999983 456899999999998884 99999998
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch-hcccccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL-KMLTGAL 836 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK-~~g~~Gl 836 (903)
|-||.+.+ +++|+++|+++|+++++|-+.+--.. + .+ +.. .+..++..|--| .+|-.|
T Consensus 173 n~tG~~~p---v~~I~~la~~~ga~v~VDaaq~~~h~---~---id-------v~~----l~~Df~afsgHKwl~gP~G- 231 (405)
T COG0520 173 NVTGTVNP---VKEIAELAHEHGALVLVDAAQAAGHL---P---ID-------VQE----LGCDFLAFSGHKWLLGPTG- 231 (405)
T ss_pred ccccccch---HHHHHHHHHHcCCEEEEECccccCcc---C---CC-------chh----cCCCEEEEcccccccCCCc-
Confidence 99999988 99999999999999999998742110 1 11 112 147889999999 555447
Q ss_pred eeeEEEeCcHHHHHHH
Q 043334 837 KFGFLVLNHPQLVDAF 852 (903)
Q Consensus 837 RiG~lv~~~~~li~~l 852 (903)
+|.+.+.++ +.+.+
T Consensus 232 -iGvLy~r~~-~l~~l 245 (405)
T COG0520 232 -IGVLYVRKE-LLEEL 245 (405)
T ss_pred -eEEEEEchH-HHhhc
Confidence 799999988 77776
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=135.46 Aligned_cols=108 Identities=14% Similarity=0.177 Sum_probs=83.1
Q ss_pred CCeEEEeCCccCHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKW---LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~---~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|||+|||+|.+++.+++.. +..+|+|+|+|+.|++.|++|. .++.++++|+..
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---------------------~~~~~~~~D~~~ 108 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---------------------PEATWINADALT 108 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------------------cCCEEEEcchhc
Confidence 5799999999999999998864 3469999999999999999886 358899999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... ++||+||+||||........ + ....|.....++++.+.+++++|+ ++
T Consensus 109 ~~~~--~~FDlIIsNPPY~~~~~~d~------------------------~--ar~~g~~~~~~li~~A~~Ll~~G~-~I 159 (241)
T PHA03412 109 TEFD--TLFDMAISNPPFGKIKTSDF------------------------K--GKYTGAEFEYKVIERASQIARQGT-FI 159 (241)
T ss_pred cccc--CCccEEEECCCCCCcccccc------------------------C--CcccccHHHHHHHHHHHHHcCCCE-EE
Confidence 6432 38999999999996432110 0 123456677789999999555555 55
Q ss_pred E
Q 043334 188 F 188 (903)
Q Consensus 188 ~ 188 (903)
+
T Consensus 160 L 160 (241)
T PHA03412 160 I 160 (241)
T ss_pred e
Confidence 5
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-11 Score=139.14 Aligned_cols=246 Identities=12% Similarity=0.099 Sum_probs=157.0
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ ..+.+.+++.+.+.+.... ....+....+++.+.+....... + .++++++++++
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~-~~~f~~sGseA 113 (421)
T PRK09792 36 DVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQ-A-KTAFFTTGAEA 113 (421)
T ss_pred eCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCC-c-eEEEeCChHHH
Confidence 35677889986553 3333 5778888888888764321 11344556677777665432111 2 67888888888
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHH-HHHHcCC-------------EEEEecCCCC-CCcc--cCHHHHHHHhhc-
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVS-AARFLKA-------------NIVNIPTESE-VGFK--MTEKTLVTILET- 744 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~-~~~~~G~-------------~vv~v~~~~~-~~f~--ld~~~L~~~l~~- 744 (903)
...++..... .| .+|+....+|-+... .....|. .++.+|...+ .+.. -+.+.+++.+..
T Consensus 114 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~ 193 (421)
T PRK09792 114 VENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSD 193 (421)
T ss_pred HHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhc
Confidence 7776655431 23 467777776655332 2222121 1222222111 1100 124777777762
Q ss_pred --CCCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 745 --VKKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 745 --~~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
....+.++..|.|+|+|..+ +.+.+++|.++|++||+++|+||+|.++.+.+..+ ....++..| |
T Consensus 194 ~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~-------a~~~~~~~p---D-- 261 (421)
T PRK09792 194 IEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLF-------AMDHYADKP---D-- 261 (421)
T ss_pred cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh-------HHHhcCCCC---c--
Confidence 22235666777789999865 99999999999999999999999998876666432 122232222 2
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
+.+|||.++ +|+|+||++++++ +++.+.... .+.+.+++.|.++.+.++
T Consensus 262 --i~t~gK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~l~ 312 (421)
T PRK09792 262 --LMTMAKSLA-GGMPLSGVVGNAN-IMDAPAPGGLGGTYAGNPLAVAAAHAVLN 312 (421)
T ss_pred --EEEeehhhc-CCCceEEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence 689999998 8999999999887 888775432 367788899997777774
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=136.84 Aligned_cols=109 Identities=23% Similarity=0.257 Sum_probs=82.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||||.++..+++.. +..+|+|+|+|++|++.|+++..... ....++++++++|+.+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~-------------~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA-------------KSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh-------------hccCCCeEEEEccccc
Confidence 357899999999999999999875 34699999999999999987753211 0012479999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++.+. ++||+|+++-.....++ ...++++++++|||||.++
T Consensus 139 lp~~~-~sfD~V~~~~~l~~~~d--------------------------------------~~~~l~ei~rvLkpGG~l~ 179 (261)
T PLN02233 139 LPFDD-CYFDAITMGYGLRNVVD--------------------------------------RLKAMQEMYRVLKPGSRVS 179 (261)
T ss_pred CCCCC-CCEeEEEEecccccCCC--------------------------------------HHHHHHHHHHHcCcCcEEE
Confidence 76543 38999986522221110 2378999999999999998
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 180 i~ 181 (261)
T PLN02233 180 IL 181 (261)
T ss_pred EE
Confidence 74
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.7e-11 Score=138.32 Aligned_cols=265 Identities=10% Similarity=0.038 Sum_probs=170.9
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...|...+|+..|. ..++ ..+.+.+++.+.+....... -..+....+++.+.+..+ .. + .++++++++++.
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~--~~-~-~v~f~~sGseA~ 111 (408)
T PRK04612 36 DDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASR--FA-E-KVFLCNSGTEAN 111 (408)
T ss_pred ECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhCC--CC-C-EEEEcCchHHHH
Confidence 35678899997663 3344 47788888888776532111 123445567777766432 11 3 799999999988
Q ss_pred HHHHHHhcc----CC-----CeEEEcCCCcHHHHHHH-HHcCCEEEE---ecCCCC---CCcccCHHHHHHHhhcCCCcE
Q 043334 686 NKLVLCCIL----EG-----GTLCFPAGSNGNYVSAA-RFLKANIVN---IPTESE---VGFKMTEKTLVTILETVKKPW 749 (903)
Q Consensus 686 ~~ll~~l~~----pG-----D~Vlv~~P~y~~~~~~~-~~~G~~vv~---v~~~~~---~~f~ld~~~L~~~l~~~~~~~ 749 (903)
..++..... .| ..|+....+|-+....+ ...|..... -|.... -.| .|++.+++.+...+ .+
T Consensus 112 e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~~~~~~-~a 189 (408)
T PRK04612 112 EAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-NDVEALEAAMAGGD-VA 189 (408)
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-CCHHHHHHhhCCCC-EE
Confidence 887765431 12 35777777765543322 222211110 011100 012 37888998886544 58
Q ss_pred EEEECCCCCCcccCCC--HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC
Q 043334 750 VYISGPTINPTGLLYS--NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL 827 (903)
Q Consensus 750 vil~~P~~NPTG~v~s--~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~ 827 (903)
.++..|. +++|.+++ .+.+++|.++|+++|+++|.||+|.++-..+.. +... .. +.+..+.+|
T Consensus 190 avi~eP~-~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~---------~a~~-~~----~~~pdi~t~ 254 (408)
T PRK04612 190 AVMLEPI-QGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTL---------FAHW-QE----QVTPDIVTL 254 (408)
T ss_pred EEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCch---------hhhh-hc----CCCCCEEEE
Confidence 8889998 88888877 678999999999999999999999876554432 1111 11 346678899
Q ss_pred chhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 828 SLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 828 SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
||.++ +|+|+||++++++ +++.+.... .+.+.+++.+.++.+.|+.-.. +.+.+.+.++-+.++++.+.
T Consensus 255 ~K~l~-~G~piga~~~~~~-~~~~~~~~~~~~t~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~ 325 (408)
T PRK04612 255 AKALG-GGFPIGAMLAGPK-VAETMQFGAHGTTFGGNPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEA 325 (408)
T ss_pred cchhc-CCCceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence 99998 8999999999977 888876533 2566789999999999853221 23444555555555555443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=125.59 Aligned_cols=130 Identities=20% Similarity=0.286 Sum_probs=98.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..+|++|+|+|||||.+++..+. ++..+|+|+|+|+++++.+++|+...+ .++.|+++|+.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~-lGa~~V~~vdiD~~a~ei~r~N~~~l~-----------------g~v~f~~~dv~~ 104 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAAL-LGASRVLAVDIDPEALEIARANAEELL-----------------GDVEFVVADVSD 104 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHh-cCCcEEEEEecCHHHHHHHHHHHHhhC-----------------CceEEEEcchhh
Confidence 36789999999999999999665 567899999999999999999997632 589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... ++|.++.||||-.. .++++. .|+..+.+. +..+
T Consensus 105 ~~~----~~dtvimNPPFG~~----------~rhaDr--------------------------~Fl~~Ale~----s~vV 140 (198)
T COG2263 105 FRG----KFDTVIMNPPFGSQ----------RRHADR--------------------------PFLLKALEI----SDVV 140 (198)
T ss_pred cCC----ccceEEECCCCccc----------cccCCH--------------------------HHHHHHHHh----hheE
Confidence 743 79999999999853 122222 333333332 1344
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEEEehhhh
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKLWQTKIL 219 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~ 219 (903)
..++.....+.+++...+.|+.+...+...+.
T Consensus 141 YsiH~a~~~~f~~~~~~~~G~~v~~~~~~~~~ 172 (198)
T COG2263 141 YSIHKAGSRDFVEKFAADLGGTVTHIERARFP 172 (198)
T ss_pred EEeeccccHHHHHHHHHhcCCeEEEEEEEEEe
Confidence 45555557788889999999998888655533
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-11 Score=142.08 Aligned_cols=239 Identities=10% Similarity=0.057 Sum_probs=159.8
Q ss_pred CCCCCeEEccCCCCCC--C-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFL--P-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~--~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...+|+..|.+.. + .++.+.+++.+.+..........+....+++.+..... ..+ .+++++++++++..+
T Consensus 47 ~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~~~~~~~~~~~~la~~L~~~~~---~~~-~v~~~~sGseA~e~A 122 (426)
T PRK00062 47 VDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGLSFGAPTELEVELAELVIELVP---SIE-MVRMVNSGTEATMSA 122 (426)
T ss_pred CCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCCcCCCCCHHHHHHHHHHHHhCC---CCC-EEEEecCHHHHHHHH
Confidence 5678899998875432 2 67889999988887632222344556667777766542 123 799999999999988
Q ss_pred HHHhccC--CCeEEEcCCCcHHHHHHHHHc-CCE------------EEEecCCCCCCcc---cCHHHHHHHhhcC-CCcE
Q 043334 689 VLCCILE--GGTLCFPAGSNGNYVSAARFL-KAN------------IVNIPTESEVGFK---MTEKTLVTILETV-KKPW 749 (903)
Q Consensus 689 l~~l~~p--GD~Vlv~~P~y~~~~~~~~~~-G~~------------vv~v~~~~~~~f~---ld~~~L~~~l~~~-~~~~ 749 (903)
+...... ++.|+..+++|.++...+... |.. ...++ . +.+. .|++.+++.+... .+..
T Consensus 123 ik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~d~~~l~~~i~~~~~~~a 199 (426)
T PRK00062 123 IRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFA--K-HTLTAPYNDLEAVEELFEEYGDEIA 199 (426)
T ss_pred HHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccc--c-ceEEcCCCCHHHHHHHHHhCCCcEE
Confidence 8775433 578999999998875433221 110 00000 0 0000 3688888887531 1224
Q ss_pred EEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 750 VYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 750 vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
.++..|-+.-+|.+.+ .+.+++|.++|++||+++|.||+|.++.+++ .. ....++-.| | +.+||
T Consensus 200 aiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~-~~-------~~~~~~~~p---D----i~~~g 264 (426)
T PRK00062 200 AVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVAL-GG-------AQGYYGVTP---D----LTTLG 264 (426)
T ss_pred EEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCC-cc-------HHHHhCCCc---c----hHhhh
Confidence 5555555345888876 8889999999999999999999998774432 21 111122222 1 46899
Q ss_pred hhcccccceeeEEEeCcHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHh
Q 043334 829 LKMLTGALKFGFLVLNHPQLVDAFSSFP-----GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 829 K~~g~~GlRiG~lv~~~~~li~~l~~~~-----~~~~~s~~~Q~aa~~~L~ 874 (903)
|.++ .||++|+++++++ +++.+.... .+.+.+++.+.++.+.|+
T Consensus 265 K~l~-~G~p~ga~~~~~~-i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~ 313 (426)
T PRK00062 265 KIIG-GGLPVGAFGGRRE-IMEQLAPLGPVYQAGTLSGNPLAMAAGLATLK 313 (426)
T ss_pred hHhh-CCCcceeeeEHHH-HHHhhccCCCceecccCcCCHHHHHHHHHHHH
Confidence 9998 8999999999877 999885321 245788899999999885
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=133.59 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=101.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
...+|||+|||+|.++..+++..|..+|+|+|+++++++.|++++...++ .+++++++|+.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l----------------~ni~~i~~d~~~~~ 79 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL----------------KNLHVLCGDANELL 79 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC----------------CCEEEEccCHHHHH
Confidence 34689999999999999999999999999999999999999999987776 48999999998754
Q ss_pred c--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 R--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
. ...+.+|.|+.|+|-.-....+.. .. -....+++++.++|||||.++
T Consensus 80 ~~~~~~~~~d~v~~~~pdpw~k~~h~~----~r--------------------------~~~~~~l~~~~r~LkpgG~l~ 129 (194)
T TIGR00091 80 DKFFPDGSLSKVFLNFPDPWPKKRHNK----RR--------------------------ITQPHFLKEYANVLKKGGVIH 129 (194)
T ss_pred HhhCCCCceeEEEEECCCcCCCCCccc----cc--------------------------cCCHHHHHHHHHHhCCCCEEE
Confidence 2 122379999998652211111000 00 001278999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCC-CeEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRG-FRVDK 212 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~g-f~~~~ 212 (903)
+.+........+.+.+.+.+ |....
T Consensus 130 ~~td~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 130 FKTDNEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred EEeCCHHHHHHHHHHHHhCCCeEecc
Confidence 98876654444455666665 66543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=138.47 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=83.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|+++....++ .++++++++|+.+..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~---------------~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGV---------------SDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC---------------ccceEEEEcCHHHHh
Confidence 5679999999999999999987 68999999999999999999987765 257999999998764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+++-......+ ...+++++.++|||||.+++.
T Consensus 107 ~~~~~~fD~V~~~~vl~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 107 QHLETPVDLILFHAVLEWVAD--------------------------------------PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred hhcCCCCCEEEehhHHHhhCC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 323348999986422111000 126799999999999999864
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-12 Score=141.05 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=85.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.|++.|+++...+++ .+++++.++|+.+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~---------------~~~v~~~~~D~~~~ 180 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGL---------------SDKVSFQVADALNQ 180 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEEcCcccC
Confidence 467899999999999999999976 67999999999999999999887765 35799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|+++--....+ ....+++++.++|||||.+++
T Consensus 181 ~~~~-~~FD~V~s~~~~~h~~--------------------------------------d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 181 PFED-GQFDLVWSMESGEHMP--------------------------------------DKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred CCCC-CCccEEEECCchhccC--------------------------------------CHHHHHHHHHHHcCCCcEEEE
Confidence 5443 4899999642111100 022789999999999999998
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 222 ~ 222 (340)
T PLN02244 222 V 222 (340)
T ss_pred E
Confidence 4
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-11 Score=135.42 Aligned_cols=192 Identities=14% Similarity=0.098 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHH
Q 043334 631 SLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNY 709 (903)
Q Consensus 631 ~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~ 709 (903)
.+.++++.+.+.....+. ..+..+.+++.+++++|.+ +.+.+++++.+|.+++.++ +++||+|++|..+|+.+
T Consensus 5 ~e~~~~v~~~l~s~~~~~-~g~~~~~fE~~~a~~~g~~-----~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~ 78 (363)
T PF01041_consen 5 EEEIDAVLEVLRSGWLST-YGPYVEEFEKEFAEYFGVK-----YAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPAT 78 (363)
T ss_dssp HHHHHHHHHHHHHTCCSS-SSHHHHHHHHHHHHHHTSS-----EEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THH
T ss_pred HHHHHHHHHHHHhCCccC-CCHHHHHHHHHHHHHhCCC-----eEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHH
Confidence 345666777776654443 1345677888888888854 4555555566777777776 67999999999999999
Q ss_pred HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCC
Q 043334 710 VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAF 789 (903)
Q Consensus 710 ~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY 789 (903)
..++...|++++.+++++ ++|.+|++.+++.+++++ ++|++++.. |... ++++|.++|+++|++||+|-+.
T Consensus 79 ~~ai~~~G~~pv~~Di~~-~~~~id~~~~~~~i~~~t-~ai~~~h~~----G~~~---d~~~i~~~~~~~~i~lIeD~a~ 149 (363)
T PF01041_consen 79 ASAILWAGAEPVFVDIDP-ETLNIDPEALEKAITPKT-KAILVVHLF----GNPA---DMDAIRAIARKHGIPLIEDAAQ 149 (363)
T ss_dssp HHHHHHTT-EEEEE-BET-TTSSB-HHHHHHHHHTTE-EEEEEE-GG----GB------HHHHHHHHHHTT-EEEEE-TT
T ss_pred HHHHHHhccEEEEEeccC-CcCCcCHHHHHHHhccCc-cEEEEecCC----CCcc---cHHHHHHHHHHcCCcEEEcccc
Confidence 999999999999999986 578999999999999988 588888666 7776 5999999999999999999998
Q ss_pred CCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 790 SGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 790 ~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
+.. .|.+... .. ...+.+.|| +|.+. .-.-|+++++++++.++++.+.
T Consensus 150 a~g~~~~g~~~------------G~-----~gd~~~fSf~~~K~i~--~geGG~v~~~~~~~~~~~~~~~ 200 (363)
T PF01041_consen 150 AFGARYKGRPV------------GS-----FGDIAIFSFHPTKIIT--TGEGGAVVTNDPELAERARALR 200 (363)
T ss_dssp TTT-EETTEET------------TS-----SSSEEEEESSTTSSS---SSS-EEEEESTHHHHHHHHHHT
T ss_pred ccCceeCCEec------------cC-----CCCceEecCCCCCCCc--CCCCeeEEecHHHHHHHhhhhh
Confidence 643 2333221 11 235677777 68774 3345999999887888887654
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-12 Score=155.82 Aligned_cols=144 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||||.+++.++.. +..+|+++|+|+.+++.|++|+..|+++ .++++++++|+.++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~--------------~~~v~~i~~D~~~~l 602 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLS--------------GRQHRLIQADCLAWL 602 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCC--------------ccceEEEEccHHHHH
Confidence 4789999999999999998875 4457999999999999999999999872 147999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+||+||||+..... +.. . ..+...+..++..+.++|+|||.+++.
T Consensus 603 ~~~~~~fDlIilDPP~f~~~~~--~~~-~------------------------~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 603 KEAREQFDLIFIDPPTFSNSKR--MED-S------------------------FDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred HHcCCCcCEEEECCCCCCCCCc--cch-h------------------------hhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3323489999999999964321 000 0 011233568899999999999999997
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
......... .+.+.+.|+....+...
T Consensus 656 ~~~~~~~~~-~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 656 NNKRGFKMD-EEGLAKLGLKAEEITAK 681 (702)
T ss_pred eCCccCChh-HHHHHhCCCeEEEEecC
Confidence 776544433 56788889988777443
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=143.01 Aligned_cols=157 Identities=8% Similarity=0.055 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~ 727 (903)
+..+++++.+++..|.. ..++++++++++.+++.+++++||+|+++...|+.....+ ...|++++.++.+
T Consensus 64 p~~~~le~~lA~l~g~~-----~av~~sSGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi~v~~vd~~- 137 (433)
T PRK08134 64 PTVAVLEERVAALEGGV-----GAIATASGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGIETTFVKPG- 137 (433)
T ss_pred hHHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCeEEEEECCC-
Confidence 45677888888887754 3577888899999888888999999999999998765544 4589999999863
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|++++++++++++ ++|++.+|+ ||||.+.+ +++|.++|+++|+++|+|.++..-.. .. +
T Consensus 138 ------d~~~l~~~i~~~T-klV~~e~~~-np~g~v~D---i~~I~~la~~~gi~livD~t~a~~~~-~~--------p- 196 (433)
T PRK08134 138 ------DIDGWRAAIRPNT-RLLFGETLG-NPGLEVLD---IPTVAAIAHEAGVPLLVDSTFTTPYL-LR--------P- 196 (433)
T ss_pred ------CHHHHHHhcCCCC-eEEEEECCC-cccCcccC---HHHHHHHHHHcCCEEEEECCCccccc-CC--------c-
Confidence 6899999999888 499999998 99999998 88899999999999999999842111 11 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
+. . +..+++.|.+|.++.+|..+|.+++
T Consensus 197 l~----~----GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 197 FE----H----GADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred hh----c----CCCEEEeccccccCCCCCceEEEEE
Confidence 11 1 3578999999999988888887765
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8e-12 Score=129.67 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=94.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.++++...+++ .++++.++|+.+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 91 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENL----------------DNLHTAVVDLNNLT 91 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCC----------------CcceEEecChhhCC
Confidence 4689999999999999999987 68999999999999999999887765 36889999998764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|+++-.++..+ .+....+++++.++|||||.+++.
T Consensus 92 ~~--~~fD~I~~~~~~~~~~------------------------------------~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 92 FD--GEYDFILSTVVLMFLE------------------------------------AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred cC--CCcCEEEEecchhhCC------------------------------------HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 3799999764432111 011337899999999999996552
Q ss_pred eC-------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MG-------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~-------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. .......+.+.++ ||++.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 134 AAMDTADYPCTVGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEecCCCCCCCCCCCCccCHHHHHHHhC--CCeEEEee
Confidence 11 1124455566665 78877663
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=135.70 Aligned_cols=100 Identities=18% Similarity=0.313 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.|+++ +++++++|+.++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------------------~~~~~~~d~~~~ 84 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------------------GVDARTGDVRDW 84 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------------------CCcEEEcChhhC
Confidence 356899999999999999999998888999999999999999752 467899999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... ++||+|++|..+...++ ...++++++++|||||.+++
T Consensus 85 ~~~--~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 85 KPK--PDTDVVVSNAALQWVPE--------------------------------------HADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred CCC--CCceEEEEehhhhhCCC--------------------------------------HHHHHHHHHHhCCCCcEEEE
Confidence 432 38999998765543221 12679999999999999998
Q ss_pred EeC
Q 043334 189 NMG 191 (903)
Q Consensus 189 ~~~ 191 (903)
.+.
T Consensus 125 ~~~ 127 (255)
T PRK14103 125 QVP 127 (255)
T ss_pred EcC
Confidence 654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=137.91 Aligned_cols=127 Identities=21% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..++.+|+|+|+|++|++.|+++... .+++++.+|+.+..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~-------------------~~i~~i~gD~e~lp 173 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL-------------------KECKIIEGDAEDLP 173 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc-------------------cCCeEEeccHHhCC
Confidence 56799999999999999999888778999999999999999987531 35788999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|++|......++ ..++++++.++|||||.+++.
T Consensus 174 ~~~-~sFDvVIs~~~L~~~~d--------------------------------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 174 FPT-DYADRYVSAGSIEYWPD--------------------------------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCC-CceeEEEEcChhhhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 443 38999997533322111 126799999999999998874
Q ss_pred eCC----------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG----------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~----------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ....+.+.+++++.||+.++..
T Consensus 215 ~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 215 GPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred EecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 211 1245666789999999987763
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=137.51 Aligned_cols=133 Identities=12% Similarity=0.247 Sum_probs=101.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|++++|++.|+++....+. ..+++++++|+.++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~---------------~~~i~~~~~dae~l 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPV---------------TSTIEYLCTTAEKL 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCc---------------ccceeEEecCHHHh
Confidence 46789999999999999999875 78999999999999999988755443 24799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|++. ++.+|..+ ...+++++.++|||||.+++
T Consensus 193 ~~~-~~~FD~Vi~~--------------~vLeHv~d------------------------~~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 193 ADE-GRKFDAVLSL--------------EVIEHVAN------------------------PAEFCKSLSALTIPNGATVL 233 (322)
T ss_pred hhc-cCCCCEEEEh--------------hHHHhcCC------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 543 3489999852 11222111 23789999999999999998
Q ss_pred EeCC-----------------------------CCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 189 NMGG-----------------------------RPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 189 ~~~~-----------------------------~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
.... ......+.+++++.||++.++.+..
T Consensus 234 st~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 234 STINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred EECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 5311 1245677889999999998875444
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.7e-12 Score=134.63 Aligned_cols=121 Identities=28% Similarity=0.421 Sum_probs=93.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..++++ +++.+..+|.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~~~~~~~---------------~~~~~~~~~~--- 178 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENAELNGVE---------------LNVYLPQGDL--- 178 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC---------------ceEEEccCCC---
Confidence 36889999999999999987764 4457999999999999999999888762 3455544432
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+||+|++|... +.+..+++++.++|||||.+++
T Consensus 179 ------~fD~Vvani~~-----------------------------------------~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 179 ------KADVIVANILA-----------------------------------------NPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred ------CcCEEEEcCcH-----------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 69999987310 0123678999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
..........+.+.+++.||.+.....
T Consensus 212 sgi~~~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 212 SGILEEQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EECcHhhHHHHHHHHHHCCCEEEEEEE
Confidence 755555566667889999999887643
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.9e-11 Score=136.77 Aligned_cols=269 Identities=10% Similarity=0.059 Sum_probs=168.4
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...||+..|. ..++ ..+.+.+++.+.+...... ....+....+++.+.+....... + .++++++++++
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~-~-~v~f~~sGseA 127 (451)
T PRK06918 50 DVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFD-K-KVLFLNSGAEA 127 (451)
T ss_pred eCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCC-C-EEEEcCCcHHH
Confidence 45677889986663 3333 4777889988887764221 11245567778888776432221 2 79999999998
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHHHH-HHcCC-------------EEEEecCCCC--CCcccC--------HHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVSAA-RFLKA-------------NIVNIPTESE--VGFKMT--------EKTL 738 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~~-~~~G~-------------~vv~v~~~~~--~~f~ld--------~~~L 738 (903)
...++..-.. .| ..|+....+|-+....+ ...|. .+..+|.... ...... .+.+
T Consensus 128 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK06918 128 VENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEF 207 (451)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHH
Confidence 8877764421 22 45777676665543322 22221 1122221100 000010 1233
Q ss_pred HHHhh----cCCCcEEEEECCCCCCc-ccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc
Q 043334 739 VTILE----TVKKPWVYISGPTINPT-GLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY 812 (903)
Q Consensus 739 ~~~l~----~~~~~~vil~~P~~NPT-G~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~ 812 (903)
++.+. +.. .+.+|.-|- +.. |.++ +.+.+++|.++|++||+++|+||+|.++.+.+... + ...++
T Consensus 208 ~~~~~~~~~~~~-iAavi~EPi-~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~---a----~~~~~ 278 (451)
T PRK06918 208 KNFFISEVAPET-IAAVVMEPV-QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYF---A----IEHFD 278 (451)
T ss_pred HHHHHhhcCCCc-eEEEEECcc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCcee---h----hHhcC
Confidence 33331 223 477778887 555 5544 55669999999999999999999999887766432 1 22232
Q ss_pred cCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHH
Q 043334 813 SSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEH 890 (903)
Q Consensus 813 ~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~ 890 (903)
..| + +.||||.++ +|+|+||++++++ +++.+.... .+.+.+.+.|.++.+.|+.-.. +.+.++++.+
T Consensus 279 v~p---D----i~t~sK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~--~~~~~~~~~~ 347 (451)
T PRK06918 279 VVP---D----LITVSKSLG-AGVPISGVIGRKE-IMDESAPGELGGTYAGSPLGCAAALAVLDIIEK--ENLNDRAIEL 347 (451)
T ss_pred CCC---C----EEeeehhhc-CCCccEEEEEcHH-HHhccCCCCcCcCCCcCHHHHHHHHHHHHHHHH--CCHHHHHHHH
Confidence 222 2 458999998 9999999999987 888876433 2778899999998888742211 2456778888
Q ss_pred HHHHHHHHHHH
Q 043334 891 IRNLESRSKRL 901 (903)
Q Consensus 891 r~~y~~Rr~~l 901 (903)
.+.++++.+.+
T Consensus 348 g~~l~~~l~~l 358 (451)
T PRK06918 348 GKVVMNRFEEM 358 (451)
T ss_pred HHHHHHHHHHH
Confidence 88888877765
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.2e-11 Score=135.04 Aligned_cols=235 Identities=11% Similarity=0.089 Sum_probs=153.8
Q ss_pred CCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCCCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNMSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|..... ..+.+.+++.+.+.++.... ...+....+++.+.+.+|. + .++++++++++..
T Consensus 34 ~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~---~~~~~~SGs~A~e 108 (401)
T TIGR01885 34 VEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGY--D---KVLPMNTGAEAVE 108 (401)
T ss_pred CCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhcCC--C---EEEEeCccHHHHH
Confidence 46777899977643333 37889999988877644221 1345567788888887763 2 5777777777777
Q ss_pred HHHHHhc---------cCC-CeEEEcCCCcHH-HHHHHHHcCC------------EEEEecCCCCCCcccCHHHHHHHhh
Q 043334 687 KLVLCCI---------LEG-GTLCFPAGSNGN-YVSAARFLKA------------NIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 687 ~ll~~l~---------~pG-D~Vlv~~P~y~~-~~~~~~~~G~------------~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.++.... .+| +.|+...-+|.. ........|- .+..++. .|++.+++.++
T Consensus 109 ~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~ 181 (401)
T TIGR01885 109 TAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPY-------NNLEALEEALE 181 (401)
T ss_pred HHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCC-------CCHHHHHHHHH
Confidence 7777642 233 467767766654 2333333221 1222222 26888988885
Q ss_pred cC--CCcEEEEECCCCCCcccCCCH-HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 744 TV--KKPWVYISGPTINPTGLLYSN-KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 744 ~~--~~~~vil~~P~~NPTG~v~s~-eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
.. ...+|++..+ +|++|.+.+. +.+++|.++|++||+++|+||+|.++.+.|... . .. ..+.. ..
T Consensus 182 ~~~~~~~avi~E~v-~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~---~----~~-~~~~~---~d 249 (401)
T TIGR01885 182 DHGPNVCAFIVEPI-QGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL---C----VD-HENVK---PD 249 (401)
T ss_pred hcCCCEEEEEEeCc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh---H----Hh-hcCCC---CC
Confidence 32 2235555555 5999999964 469999999999999999999997765545431 1 11 11111 12
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
++ ++||.++..|+|+||++++++ +++.+..... ..+.+++.|.++.++|+
T Consensus 250 i~---~~gK~l~~g~~~ig~v~~~~~-i~~~~~~~~~~~t~~~~p~~~~aa~a~L~ 301 (401)
T TIGR01885 250 IV---LLGKALSGGVYPVSAVLADDD-VMLTIKPGEHGSTYGGNPLACAVAVAALE 301 (401)
T ss_pred EE---EeeccccCCCCCcEEEEEcHH-HHhhccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33 468999877799999999877 8888765222 55667888999988885
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-11 Score=123.86 Aligned_cols=126 Identities=20% Similarity=0.172 Sum_probs=107.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+++|+|||||.+++.++...|..+||++|-++++++..++|++..|. +|++++.||.-+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~----------------~n~~vv~g~Ap~~ 96 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV----------------DNLEVVEGDAPEA 96 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC----------------CcEEEEeccchHh
Confidence 467899999999999999999888899999999999999999999999987 6999999999888
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+.+.. ++|.|+- - +. ..+..+++.+...|||||+++.
T Consensus 97 L~~~~-~~daiFI-----G----------------------------------Gg---~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 97 LPDLP-SPDAIFI-----G----------------------------------GG---GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred hcCCC-CCCEEEE-----C----------------------------------CC---CCHHHHHHHHHHHcCcCCeEEE
Confidence 76554 7999971 1 11 2244789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCC-eEEEE
Q 043334 189 NMGGRPGQGVCKRLFERRGF-RVDKL 213 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf-~~~~~ 213 (903)
+.-.........+.+++.|+ +++++
T Consensus 134 naitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 134 NAITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred EeecHHHHHHHHHHHHHcCCceEEEE
Confidence 88877777777789999999 55554
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.5e-11 Score=137.53 Aligned_cols=267 Identities=12% Similarity=0.088 Sum_probs=164.2
Q ss_pred cCCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCCCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 611 ETPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNMSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...|...+|+..|.-... ..+.+.+++.+.+.++.... -..+....+++.+.+..|. + .++++++++++.
T Consensus 71 d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~--~---~~~f~~SGseA~ 145 (474)
T PLN02624 71 DPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGY--D---MVLPMNTGAEGV 145 (474)
T ss_pred ECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCC--C---eEEEeCChHHHH
Confidence 346778889876643322 37889999999887643221 1234456677777776652 2 677778777888
Q ss_pred HHHHHHhcc--------C-CC-eEEEcCCCcHHHHHHHHHcCCEEE-E---ecCCCC---CCcccCHHHHHHHhhcC--C
Q 043334 686 NKLVLCCIL--------E-GG-TLCFPAGSNGNYVSAARFLKANIV-N---IPTESE---VGFKMTEKTLVTILETV--K 746 (903)
Q Consensus 686 ~~ll~~l~~--------p-GD-~Vlv~~P~y~~~~~~~~~~G~~vv-~---v~~~~~---~~f~ld~~~L~~~l~~~--~ 746 (903)
..++..... + |. .|+...-+|-+....+.....+.. . -|..+. -.| .|++.+++.++.. .
T Consensus 146 e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~ 224 (474)
T PLN02624 146 ETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDF-GDLDALEKIFEEDGDR 224 (474)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCC-CCHHHHHHHHHhCCCC
Confidence 777754332 1 33 466666555543222211111110 0 011000 001 2678888888632 2
Q ss_pred CcEEEEECCCCCCcccCCCHH-HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc
Q 043334 747 KPWVYISGPTINPTGLLYSNK-EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG 825 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v~s~e-el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~ 825 (903)
..+|++..++ ||+|.+++.+ .+++|.++|++||+++|.||+|.++-..|... . .....-.+ . +-
T Consensus 225 iaaiiiEpv~-~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~---a----~~~~~i~p----D---iv 289 (474)
T PLN02624 225 IAAFLFEPIQ-GEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKML---A----CDWEEVRP----D---VV 289 (474)
T ss_pred EEEEEECCcc-CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchh---h----HHhcCCCC----C---EE
Confidence 3466666665 9999998877 49999999999999999999998765544321 1 11111111 1 33
Q ss_pred cCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 826 GLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 826 S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+|||.+|.+++++|+++++++ +++.+.... .+.+.+++.+.++.+.|+.-.. ..+.++..++.+.++++.+.+
T Consensus 290 ~lsK~lggG~~pigav~~~~~-i~~~~~~~~~~~T~~g~pl~~aaa~aaLe~l~~--~~l~~~~~~~~~~l~~~L~~l 364 (474)
T PLN02624 290 ILGKALGGGVIPVSAVLADKD-VMLCIKPGEHGSTFGGNPLASAVAMAALQVVQD--EKLAERSAKLGQELRDQLQKI 364 (474)
T ss_pred EecccccCCCCcceeeeecHH-HHhHhccCCcCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHH
Confidence 368999987799999999876 888776443 2557788999999999852111 234445566666666665543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-12 Score=129.15 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.+++++..+++ ++.+..+|+....
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~-----------------~v~~~~~d~~~~~ 90 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENL-----------------PLRTDAYDINAAA 90 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCC-----------------CceeEeccchhcc
Confidence 4579999999999999999986 68999999999999999998877665 3777788876554
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+ ++||+|+++.++...+. +....+++++.++|||||.+++.
T Consensus 91 ~~--~~fD~I~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 91 LN--EDYDFIFSTVVFMFLQA------------------------------------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred cc--CCCCEEEEecccccCCH------------------------------------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 33 37999998876653211 11237799999999999996653
Q ss_pred eC-------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG-------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~-------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. .......++++++ +|.+...
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 133 AAMDTADYPCHMPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred EecccCCCCCCCCcCccCCHHHHHHHhC--CCeEEEe
Confidence 21 1234455555664 4777665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.1e-12 Score=129.35 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=98.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|.+++.+++.. ++.+|+++|+++++++.|++|+..+++ .+++.++.+|..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~---------------~~~v~~~~~d~~ 102 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV---------------LNNIVLIKGEAP 102 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC---------------CCCeEEEEechh
Confidence 4577899999999999999998865 356999999999999999999988874 257999999997
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+......++||+|+.+... ..+..+++.+.+.|||||.+
T Consensus 103 ~~l~~~~~~~D~V~~~~~~-----------------------------------------~~~~~~l~~~~~~LkpgG~l 141 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGS-----------------------------------------EKLKEIISASWEIIKKGGRI 141 (198)
T ss_pred hhHhhcCCCCCEEEECCCc-----------------------------------------ccHHHHHHHHHHHcCCCcEE
Confidence 7543333489999864210 01236799999999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeE
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRV 210 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~ 210 (903)
++..............+++.||..
T Consensus 142 v~~~~~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 142 VIDAILLETVNNALSALENIGFNL 165 (198)
T ss_pred EEEeecHHHHHHHHHHHHHcCCCe
Confidence 986655445556667889999843
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.5e-12 Score=135.50 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=83.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++.+|||+|||+|..+..+++.+ |+.+|+|+|+|+.|++.|++++...+. ..+++++++|+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~---------------~~~v~~~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS---------------EIPVEILCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---------------CCCeEEEECChhh
Confidence 56799999999999999999874 678999999999999999999865543 2479999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...+ .+|+|+++-.... +.. .....++++++++|||||.++
T Consensus 118 ~~~~---~~d~v~~~~~l~~------~~~------------------------------~~~~~~l~~i~~~LkpgG~l~ 158 (239)
T TIGR00740 118 VEIK---NASMVILNFTLQF------LPP------------------------------EDRIALLTKIYEGLNPNGVLV 158 (239)
T ss_pred CCCC---CCCEEeeecchhh------CCH------------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 7543 5898886432221 100 112378999999999999999
Q ss_pred EEeC
Q 043334 188 FNMG 191 (903)
Q Consensus 188 ~~~~ 191 (903)
+...
T Consensus 159 i~d~ 162 (239)
T TIGR00740 159 LSEK 162 (239)
T ss_pred Eeec
Confidence 8643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5e-12 Score=135.85 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=84.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEK--WLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~--~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++.+|||+|||+|..+..+++. .++.+|+|+|+|+.|++.|++++..++. ..+++++++|+.+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~---------------~~~v~~~~~d~~~ 120 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---------------PTPVDVIEGDIRD 120 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC---------------CCCeEEEeCChhh
Confidence 5789999999999999998874 4778999999999999999999977665 2579999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.+.. .+|+|++|......++ +....+++++++.|||||.++
T Consensus 121 ~~~~---~~D~vv~~~~l~~l~~------------------------------------~~~~~~l~~i~~~LkpGG~l~ 161 (247)
T PRK15451 121 IAIE---NASMVVLNFTLQFLEP------------------------------------SERQALLDKIYQGLNPGGALV 161 (247)
T ss_pred CCCC---CCCEEehhhHHHhCCH------------------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence 7543 5899987643332110 112378999999999999999
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 162 l~ 163 (247)
T PRK15451 162 LS 163 (247)
T ss_pred EE
Confidence 84
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=141.50 Aligned_cols=119 Identities=14% Similarity=0.065 Sum_probs=82.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||||..+..+++.++ +.+|+|+|+|++|++.|++++....- ..++.++++|+.+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p---------------~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP---------------QLEVHGICADFTQP 127 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC---------------CceEEEEEEcccch
Confidence 568999999999999999999876 58999999999999999998754321 12578899999874
Q ss_pred ccCCCCce---eEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CRDHDIQL---ERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~~~~~~f---D~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
..... .+ +.+++ +.......+ ..+...+++++++++|+|||.
T Consensus 128 ~~~~~-~~~~~~~~~~----~~gs~~~~~------------------------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 128 LALPP-EPAAGRRLGF----FPGSTIGNF------------------------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred hhhhc-ccccCCeEEE----EecccccCC------------------------------CHHHHHHHHHHHHHhcCCCCE
Confidence 32111 22 23221 111111111 112234889999999999999
Q ss_pred EEEEeCCCCcHHH
Q 043334 186 MIFNMGGRPGQGV 198 (903)
Q Consensus 186 ll~~~~~~~~~~~ 198 (903)
+++.+........
T Consensus 173 ~lig~d~~~~~~~ 185 (301)
T TIGR03438 173 LLIGVDLVKDPAV 185 (301)
T ss_pred EEEeccCCCCHHH
Confidence 9997766554443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=133.53 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=99.6
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|..++.+++..+ ..+|+|+|+++.|++.|++|....++ ++++++++|+.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~----------------~~v~~~~~d~~ 138 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY----------------TNVEFRLGEIE 138 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC----------------CCEEEEEcchh
Confidence 34788999999999999888877654 35899999999999999999887765 47999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
++.... ++||+|++|..+...++ ...++++++++|||||++
T Consensus 139 ~l~~~~-~~fD~Vi~~~v~~~~~d--------------------------------------~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 139 ALPVAD-NSVDVIISNCVINLSPD--------------------------------------KERVFKEAFRVLKPGGRF 179 (272)
T ss_pred hCCCCC-CceeEEEEcCcccCCCC--------------------------------------HHHHHHHHHHHcCCCcEE
Confidence 865433 38999998743332111 126799999999999999
Q ss_pred EEEeC----------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 187 IFNMG----------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 187 l~~~~----------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
++... .......+.+++++.||..+++.
T Consensus 180 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~ 229 (272)
T PRK11873 180 AISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ 229 (272)
T ss_pred EEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence 98311 11233455678888888877663
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-12 Score=126.84 Aligned_cols=109 Identities=19% Similarity=0.361 Sum_probs=90.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
....+|.|+|||+|..+..|++++|++.++|+|-|++|++.|++.+ ++++|.++|+.++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---------------------p~~~f~~aDl~~w 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---------------------PDATFEEADLRTW 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---------------------CCCceecccHhhc
Confidence 3457899999999999999999999999999999999999998765 6899999999999
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.++. ++|++++|--+.-.++ +-.+|......|.|||.+.+
T Consensus 88 ~p~~--~~dllfaNAvlqWlpd--------------------------------------H~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 88 KPEQ--PTDLLFANAVLQWLPD--------------------------------------HPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred CCCC--ccchhhhhhhhhhccc--------------------------------------cHHHHHHHHHhhCCCceEEE
Confidence 8765 7999987633321111 23678888899999999999
Q ss_pred EeCCCCcHHH
Q 043334 189 NMGGRPGQGV 198 (903)
Q Consensus 189 ~~~~~~~~~~ 198 (903)
.++.......
T Consensus 128 QmPdN~deps 137 (257)
T COG4106 128 QMPDNLDEPS 137 (257)
T ss_pred ECCCccCchh
Confidence 9987665443
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.5e-12 Score=137.54 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=89.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||||.++++.++ ++..+|+|+|+||.+++.|++|+..|+++ +++.+. ...+.
T Consensus 160 ~~g~~vLDvG~GSGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~N~~~N~~~---------------~~~~v~--~~~~~ 221 (295)
T PF06325_consen 160 KPGKRVLDVGCGSGILAIAAAK-LGAKKVVAIDIDPLAVEAARENAELNGVE---------------DRIEVS--LSEDL 221 (295)
T ss_dssp STTSEEEEES-TTSHHHHHHHH-TTBSEEEEEESSCHHHHHHHHHHHHTT-T---------------TCEEES--CTSCT
T ss_pred cCCCEEEEeCCcHHHHHHHHHH-cCCCeEEEecCCHHHHHHHHHHHHHcCCC---------------eeEEEE--Eeccc
Confidence 3678999999999999999776 45679999999999999999999999983 455543 22222
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. .++||+|++| +... .+..+.....++|+|||.+++
T Consensus 222 ~---~~~~dlvvAN-----------I~~~------------------------------vL~~l~~~~~~~l~~~G~lIl 257 (295)
T PF06325_consen 222 V---EGKFDLVVAN-----------ILAD------------------------------VLLELAPDIASLLKPGGYLIL 257 (295)
T ss_dssp C---CS-EEEEEEE-----------S-HH------------------------------HHHHHHHHCHHHEEEEEEEEE
T ss_pred c---cccCCEEEEC-----------CCHH------------------------------HHHHHHHHHHHhhCCCCEEEE
Confidence 1 1489999987 2111 133678888999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.--.......+.+.+++ ||+..+...
T Consensus 258 SGIl~~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 258 SGILEEQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp EEEEGGGHHHHHHHHHT-TEEEEEEEE
T ss_pred ccccHHHHHHHHHHHHC-CCEEEEEEE
Confidence 53333445555667766 999877643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-11 Score=138.52 Aligned_cols=130 Identities=20% Similarity=0.234 Sum_probs=95.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||||.+++.++. .+..+|+++|+|+.+++.|++|+..|+++ .++++++++|+.++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~-~ga~~V~~VD~s~~al~~a~~N~~~Ngl~--------------~~~v~~i~~D~~~~l 284 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALM-GGCSQVVSVDTSQEALDIARQNVELNKLD--------------LSKAEFVRDDVFKLL 284 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCC--------------CCcEEEEEccHHHHH
Confidence 578999999999999988664 34569999999999999999999999872 137999999998875
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.. ..++||+||+||||+.... ..+. .+...+..+++.+.++|+|||.+
T Consensus 285 ~~~~~~~~~fDlVilDPP~f~~~k-~~l~----------------------------~~~~~y~~l~~~a~~lLk~gG~l 335 (396)
T PRK15128 285 RTYRDRGEKFDVIVMDPPKFVENK-SQLM----------------------------GACRGYKDINMLAIQLLNPGGIL 335 (396)
T ss_pred HHHHhcCCCCCEEEECCCCCCCCh-HHHH----------------------------HHHHHHHHHHHHHHHHcCCCeEE
Confidence 32 2347999999999975432 1111 11223567888999999999998
Q ss_pred EEE-eCCCCcHHHHHHHH
Q 043334 187 IFN-MGGRPGQGVCKRLF 203 (903)
Q Consensus 187 l~~-~~~~~~~~~l~~ll 203 (903)
+.. +......+.+++++
T Consensus 336 v~~scs~~~~~~~f~~~v 353 (396)
T PRK15128 336 LTFSCSGLMTSDLFQKII 353 (396)
T ss_pred EEEeCCCcCCHHHHHHHH
Confidence 864 33334444444443
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=117.50 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=83.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..++.+|+|+|+++.+++.+++|+..+++ .+++++.+|.....
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV----------------SNIVIVEGDAPEAL 82 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC----------------CceEEEeccccccC
Confidence 46799999999999999999988888999999999999999999987765 47899999876533
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+|++..+. ..+..+++.+++.|||||.+++.
T Consensus 83 ~~~~~~~D~v~~~~~~-----------------------------------------~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSG-----------------------------------------GLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hhhcCCCCEEEECCcc-----------------------------------------hhHHHHHHHHHHHcCCCCEEEEE
Confidence 2222389999853110 01237899999999999999986
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 122 ~ 122 (124)
T TIGR02469 122 A 122 (124)
T ss_pred e
Confidence 4
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.2e-10 Score=130.42 Aligned_cols=199 Identities=20% Similarity=0.199 Sum_probs=151.8
Q ss_pred CCcHHHHHHHHHHHHccCC-------CCC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh---ccC
Q 043334 628 PIPSLVKAAIFESFARQNM-------SES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC---ILE 695 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~-------~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l---~~p 695 (903)
++|+.+++++.+.+..+.. ..+ ..+..+.+++.+++..|.+.+ + +|++++|++.++..++.++ +++
T Consensus 10 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~-~-~v~~~~~~t~a~~~~~~~l~~~~~~ 87 (371)
T PF00266_consen 10 PMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPD-E-EVVFTSNGTEALNAVASSLLNPLKP 87 (371)
T ss_dssp B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTT-E-EEEEESSHHHHHHHHHHHHHHHGTT
T ss_pred CCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccc-c-ccccccccchhhhhhhhcccccccc
Confidence 5788899999888764311 112 245567788888888898762 2 8999999999999999999 789
Q ss_pred CCeEEEcCCCcHHHH----HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 696 GGTLCFPAGSNGNYV----SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 696 GD~Vlv~~P~y~~~~----~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
||+|++.+-.|++.. ...+..|+++..++.+.++ .+|++++++.+++++ +++.++.-. |-||..++ +++
T Consensus 88 g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~--~~~~~~~~~~l~~~~-~lv~~~~~~-~~tG~~~p---i~~ 160 (371)
T PF00266_consen 88 GDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGG--SLDLEDLEEALNPDT-RLVSISHVE-NSTGVRNP---IEE 160 (371)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTS--SCSHHHHHHHHHTTE-SEEEEESBE-TTTTBBSS---HHH
T ss_pred ccccccccccccccccccccccccchhhhccccccccc--hhhhhhhhhhhcccc-ceEEeeccc-ccccEEee---ece
Confidence 999999999998866 3345779999999886533 489999999998766 589899887 99999999 888
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|.++|+++|+++++|-+.+.-. .+. . +... +..+++.|.-|.+|.+| +|+++.+++ +++.
T Consensus 161 I~~~~~~~~~~~~vD~~~~~g~---~~i---------d-~~~~----~~D~~~~s~~Kl~gp~G--~g~l~v~~~-~~~~ 220 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQSAGC---VPI---------D-LDEL----GADFLVFSSHKLGGPPG--LGFLYVRPE-AIER 220 (371)
T ss_dssp HHHHHHHTTSEEEEE-TTTTTT---SS------------TTTT----TESEEEEESTSTTSSST--EEEEEEEHH-HHHH
T ss_pred ehhhhhccCCceeEechhcccc---ccc---------c-cccc----ccceeeecccccCCCCc--hhhheehhh-hhhc
Confidence 9999999999999999885211 110 0 1121 35689999999556566 699999987 8888
Q ss_pred HHhC
Q 043334 852 FSSF 855 (903)
Q Consensus 852 l~~~ 855 (903)
+...
T Consensus 221 ~~p~ 224 (371)
T PF00266_consen 221 LRPA 224 (371)
T ss_dssp HHTS
T ss_pred cccc
Confidence 8543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=134.06 Aligned_cols=133 Identities=28% Similarity=0.349 Sum_probs=98.2
Q ss_pred HHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCC
Q 043334 17 FYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLD 96 (903)
Q Consensus 17 ~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~ 96 (903)
.++.+.... .++++|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|++|+..|+++ .
T Consensus 149 ~l~~l~~~~---~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~---------------~ 209 (288)
T TIGR00406 149 CLEWLEDLD---LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVS---------------D 209 (288)
T ss_pred HHHHHHhhc---CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCC---------------c
Confidence 344444433 36789999999999999998764 5569999999999999999999988872 4
Q ss_pred cEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 97 RVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 97 ~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
++.+..+|..... .++||+|++|+.. +.+..++.++
T Consensus 210 ~~~~~~~~~~~~~---~~~fDlVvan~~~-----------------------------------------~~l~~ll~~~ 245 (288)
T TIGR00406 210 RLQVKLIYLEQPI---EGKADVIVANILA-----------------------------------------EVIKELYPQF 245 (288)
T ss_pred ceEEEeccccccc---CCCceEEEEecCH-----------------------------------------HHHHHHHHHH
Confidence 6777777743322 2389999987420 0123678899
Q ss_pred hhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 177 IGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 177 ~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.++|||||.+++..-.......+.+.+++. |+....
T Consensus 246 ~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 246 SRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred HHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-CceeeE
Confidence 999999999998654444555666777766 887765
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=143.12 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=106.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. ..+|+|+|+|++|++.|++|+..+++ ++++++++|+.+..
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~----------------~~v~~~~~d~~~~l 358 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGL----------------DNVTFYHANLEEDF 358 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEEEeChHHhh
Confidence 5689999999999999999987 47999999999999999999998887 47999999997653
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.. ...+||+|+.||||.-.+ ..++.+.+ ++|++.+
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g~~-----------------------------------------~~~~~l~~-~~~~~iv 396 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAGAA-----------------------------------------EVMQALAK-LGPKRIV 396 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcChH-----------------------------------------HHHHHHHh-cCCCeEE
Confidence 21 123799999999998311 12333322 6899999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
++.++.......+ ..|.+.||++.++... .+|..+..++.++.+++
T Consensus 397 yvSCnp~tlaRDl-~~L~~~gY~l~~i~~~-------DmFP~T~HvE~v~lL~r 442 (443)
T PRK13168 397 YVSCNPATLARDA-GVLVEAGYRLKRAGML-------DMFPHTGHVESMALFER 442 (443)
T ss_pred EEEeChHHhhccH-HHHhhCCcEEEEEEEe-------ccCCCCCcEEEEEEEEe
Confidence 9988765555554 3566789999888422 23334456766666654
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-10 Score=133.00 Aligned_cols=211 Identities=10% Similarity=0.056 Sum_probs=138.7
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHH-HccCCC-------CCchHHHHHHHH----HHHhhcCCCCCCCCcEEecCch
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESF-ARQNMS-------ESEIDVTPSIQQ----YIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al-~~y~~~-------~G~~~lr~ala~----~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
..+.++|-.++|.. +|.+++++...+ .+|+.. .| .+..+.+++ .+++.+|.+.. ++.++++
T Consensus 27 ~~~~~~l~~sen~~--~p~v~~a~~~~~~~~~~~g~~gsr~~~G-~~~~~~lE~~~~~~la~l~g~~~a----lv~~~SG 99 (416)
T PRK13034 27 QQDHLELIASENFT--SPAVMEAQGSVLTNKYAEGYPGKRYYGG-CEFVDEVEALAIERAKQLFGCDYA----NVQPHSG 99 (416)
T ss_pred HhcCeeecccccCC--CHHHHHHhcchhhcCCCCCCCCCcccCC-ChHHHHHHHHHHHHHHHHhCCCce----EEecCCc
Confidence 35678888888764 788999988885 666442 23 355677777 89998887643 4445555
Q ss_pred HHHHHHHHHHhccCCCeEEEcCCCcHHH-HHHHHH--cCCEE--EEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 682 QSLFNKLVLCCILEGGTLCFPAGSNGNY-VSAARF--LKANI--VNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD~Vlv~~P~y~~~-~~~~~~--~G~~v--v~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+.++..++.++++|||+|+++..+|... ...++. .+... +.++.+. .++.+|++++++.+...+.++|++..+.
T Consensus 100 ~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~~~le~~l~~~~~klVi~~~~~ 178 (416)
T PRK13034 100 SQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDR-LTGLIDYDEVEELAKEHKPKLIIAGFSA 178 (416)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEccccc-ccCCcCHHHHHHHHhhcCCeEEEECCCc
Confidence 7777778899999999999999988762 211111 12222 3454443 2466899999998865333466665554
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
+ |...+ +.+|.++|+++|+++|+|++++.-.+..... ...+. ...++++|++|.++.+
T Consensus 179 -~--g~~~d---l~~l~~la~~~g~~livD~Aha~G~~~~g~~--------~~~~~------~~Di~~~s~~K~l~g~-- 236 (416)
T PRK13034 179 -Y--PRELD---FARFREIADEVGALLMVDMAHIAGLVAAGEH--------PNPFP------HAHVVTTTTHKTLRGP-- 236 (416)
T ss_pred -c--ccccC---HHHHHHHHHHcCCEEEEeCcccccCcccCCC--------CCCCC------CceEEEEeCcccCCCC--
Confidence 3 44544 7788888999999999999986433321110 00111 2468999999998423
Q ss_pred eeeEEEeCcHHHHHHHHh
Q 043334 837 KFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~ 854 (903)
.-|++++.++.+.+.++.
T Consensus 237 ~GG~v~~~~~~~~~~~~~ 254 (416)
T PRK13034 237 RGGMILTNDEEIAKKINS 254 (416)
T ss_pred CCeEEEECcHHHHHHHHh
Confidence 248888877645555554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=127.20 Aligned_cols=133 Identities=24% Similarity=0.226 Sum_probs=97.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP------SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~------~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
.++.++||+|||||-++..+.+..+. .+|+.+|+||+|++.++++....++.+ ..++.|++
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~-------------~~~~~w~~ 165 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA-------------SSRVEWVE 165 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc-------------CCceEEEe
Confidence 35789999999999999999998876 799999999999999999987766521 13599999
Q ss_pred ccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 103 SDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 103 gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
+|..+++.+++ +||..+. .-. ......+++.+++++|+|||
T Consensus 166 ~dAE~LpFdd~-s~D~yTi-------------afG-------------------------IRN~th~~k~l~EAYRVLKp 206 (296)
T KOG1540|consen 166 GDAEDLPFDDD-SFDAYTI-------------AFG-------------------------IRNVTHIQKALREAYRVLKP 206 (296)
T ss_pred CCcccCCCCCC-cceeEEE-------------ecc-------------------------eecCCCHHHHHHHHHHhcCC
Confidence 99999986655 8998862 100 11112245899999999999
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 183 SGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 183 gG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
||+|.+-.-+....+.++.+....-|.+...
T Consensus 207 GGrf~cLeFskv~~~~l~~fy~~ysf~Vlpv 237 (296)
T KOG1540|consen 207 GGRFSCLEFSKVENEPLKWFYDQYSFDVLPV 237 (296)
T ss_pred CcEEEEEEccccccHHHHHHHHhhhhhhhch
Confidence 9999885544444334444444444555444
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=135.11 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=104.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|++.+++ ++++++++|+.++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l----------------~~v~~~~~D~~~~~ 234 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGL----------------TNVQFQALDSTQFA 234 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEEEcCHHHHH
Confidence 4579999999999999999985 67999999999999999999998887 47999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+.|||..- +.. .+. +....++|++++++.
T Consensus 235 ~~~~~~~D~Vv~dPPr~G------~~~----------------------------------~~~-~~l~~~~~~~ivyvs 273 (315)
T PRK03522 235 TAQGEVPDLVLVNPPRRG------IGK----------------------------------ELC-DYLSQMAPRFILYSS 273 (315)
T ss_pred HhcCCCCeEEEECCCCCC------ccH----------------------------------HHH-HHHHHcCCCeEEEEE
Confidence 432237999999999541 111 111 122335789999998
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
++.......+..+ .||+..++... ..|..+..++.++.+++
T Consensus 274 c~p~t~~rd~~~l---~~y~~~~~~~~-------DmFP~T~HvE~v~~l~r 314 (315)
T PRK03522 274 CNAQTMAKDLAHL---PGYRIERVQLF-------DMFPHTAHYEVLTLLVR 314 (315)
T ss_pred CCcccchhHHhhc---cCcEEEEEEEe-------ccCCCCCeEEEEEEEEc
Confidence 8887766665544 58998887422 23334455666655543
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-10 Score=128.51 Aligned_cols=185 Identities=16% Similarity=0.217 Sum_probs=130.5
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH-HHHHcCCEEEEecCCC-------
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS-AARFLKANIVNIPTES------- 727 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~-~~~~~G~~vv~v~~~~------- 727 (903)
.+++.+++++|.+ .++.+++++.++..+....++|||.| +.++|..... .+...|+..+.++.++
T Consensus 75 ~lE~~va~~~G~~-----~av~v~sGT~Al~ll~~l~l~pGDeV--psn~~f~Tt~ahIe~~Gav~vDi~~dea~~~~~~ 147 (450)
T TIGR02618 75 HLERTVRELYGFK-----YVVPTHQGRGAENLLSQIAIKPGDYV--PGNMYFTTTRYHQEKNGATFVDIIIDEAHDAQLN 147 (450)
T ss_pred HHHHHHHHHHCCC-----eEEEcCCHHHHHHHHHHhCCCCcCEE--CCceeHHHHHHHHHhCCeEEEeeecccccccccC
Confidence 4555555556754 57888888888887777889999977 7788755444 4788999777775541
Q ss_pred -CCCcccCHHHHHHHhhcCC---CcEEEEECCCCC-CcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC--CccC---CC
Q 043334 728 -EVGFKMTEKTLVTILETVK---KPWVYISGPTIN-PTGLLYSNKEIENILTVCAKYGARVVIDTAFSG--LEFN---YE 797 (903)
Q Consensus 728 -~~~f~ld~~~L~~~l~~~~---~~~vil~~P~~N-PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~--l~f~---~~ 797 (903)
...+++|+++++++++++. .+++.+.+++ | ..|.++|.+++++|.++|++||+.||+|-+... -.|- ..
T Consensus 148 ~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~-N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~ 226 (450)
T TIGR02618 148 IPFKGNVDLKKLQKLIDEVGADKIPYICLAVTV-NLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQ 226 (450)
T ss_pred CCCCCCcCHHHHHHHhccccCcccCceEEEEec-ccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccc
Confidence 2357899999999998642 2478888887 7 558999999999999999999999999998742 1120 11
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc-cceeeEEEeCcHHHHHHHHhCC
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~~li~~l~~~~ 856 (903)
.....++......+-.. -..+..|..|.++.| | |+++..+++++++++...
T Consensus 227 g~~~~~i~ei~~e~~~~-----aD~~~~S~~Kd~~~~~G---G~l~~~d~~l~~k~r~~~ 278 (450)
T TIGR02618 227 GYEDKSIAEILKEMMSY-----ADGCTMSGKKDCLVNIG---GFLCMNDDEMFQSAKELV 278 (450)
T ss_pred cccCCCHHHHHHHHhcc-----CcEEEEeeccCCCCCCc---eEEEeCCHHHHHHHHHHh
Confidence 11112332333333232 244889999998766 5 788877777999888763
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=132.67 Aligned_cols=173 Identities=10% Similarity=0.089 Sum_probs=131.6
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv 721 (903)
+++...+-+..+++.++...|.+ ..++++++++++..++.+++++||+|++++..|.+....+ +..|+++.
T Consensus 56 YsR~~nPt~~~le~~la~LEg~~-----~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~ 130 (395)
T PRK08114 56 YGRRGTLTHFSLQEAMCELEGGA-----GCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTT 130 (395)
T ss_pred ccCCCChhHHHHHHHHHHHhCCC-----eEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEE
Confidence 44444456788999998876643 4566666899999889999999999999999998776654 66799999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC--CcEEEEecCCCCCccCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY--GARVVIDTAFSGLEFNYEGW 799 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~--~i~VI~DeaY~~l~f~~~~~ 799 (903)
.++. .|.+.+++++++++ ++|++.+|+ ||||.+.+ +++|+++|+++ |+++|+|.+++--.+ -+
T Consensus 131 ~vd~-------~d~~~l~~~l~~~T-rlV~~Etps-Np~~~v~D---I~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~-- 195 (395)
T PRK08114 131 WFDP-------LIGADIAKLIQPNT-KVVFLESPG-SITMEVHD---VPAIVAAVRSVNPDAVIMIDNTWAAGVL-FK-- 195 (395)
T ss_pred EECC-------CCHHHHHHhcCCCc-eEEEEECCC-CCCCEeec---HHHHHHHHHHhCCCCEEEEECCCccccc-cC--
Confidence 8874 36788999998877 599999999 99999988 88999999998 499999999953111 00
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~ 854 (903)
... . +-.++++|.+|.++.+| .-.|.++.+++ +.+.+..
T Consensus 196 -------pl~----~----GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~~~l~~ 235 (395)
T PRK08114 196 -------ALD----F----GIDISIQAGTKYLVGHSDAMIGTAVANAR-CWEQLRE 235 (395)
T ss_pred -------HHH----c----CCcEEEEcCcccccCCCcceeEEEEcCHH-HHHHHHH
Confidence 011 1 35799999999887665 56676666554 6565553
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=139.05 Aligned_cols=160 Identities=10% Similarity=0.041 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++.+|.+. -++++ ++++++..++.+++++||+|+++...|...... +...|++++.++ +
T Consensus 68 ~p~~~~Le~~lA~l~g~~~----av~~s-SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v~~vd-d 141 (436)
T PRK07812 68 NPTQDVVEQRIAALEGGVA----ALLLA-SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGIEVSFVE-D 141 (436)
T ss_pred CchHHHHHHHHHHHhCCCe----EEEEc-cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeEEEEEEC-C
Confidence 3456788888988888643 25555 556688888899999999999999888876543 344788888885 2
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
. .|++.+++++++++ ++|++.+|+ ||+|.+.+ +++|.++|+++|+++|+|++++.-.. .. +
T Consensus 142 ~-----~d~e~l~~ai~~~t-klV~ie~~s-Np~G~v~D---l~~I~~la~~~gi~liVD~t~a~~~~-~~--------p 202 (436)
T PRK07812 142 P-----DDLDAWRAAVRPNT-KAFFAETIS-NPQIDVLD---IPGVAEVAHEAGVPLIVDNTIATPYL-IR--------P 202 (436)
T ss_pred C-----CCHHHHHHhCCCCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCccccc-CC--------c
Confidence 2 27899999998877 599999998 99999998 78888999999999999998742111 00 1
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+. . +-.+++.|++|.+|..|--+|.+++.
T Consensus 203 -l~----~----GaDivv~S~tK~lgg~G~~i~G~vv~ 231 (436)
T PRK07812 203 -LE----H----GADIVVHSATKYLGGHGTAIAGVIVD 231 (436)
T ss_pred -hh----c----CCCEEEEecccccCCCCCeEEEEEEc
Confidence 11 1 24578899999999888778887774
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=133.70 Aligned_cols=271 Identities=10% Similarity=0.041 Sum_probs=165.4
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ ..+.+.+++.+.+.+.... ....+....+++.+.+..... ..+ .++++++++++
T Consensus 29 D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~-~v~f~~sGseA 106 (420)
T TIGR00700 29 DVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGS-GPK-KSVFFNSGAEA 106 (420)
T ss_pred eCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCC-CCC-EEEEeCCcHHH
Confidence 34677889986663 3333 4678899988887654221 122344556777777654211 112 68888888888
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHHHH-HHcCC-------------EEEEecCCC--C-------CCcccCHHHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVSAA-RFLKA-------------NIVNIPTES--E-------VGFKMTEKTLV 739 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~~-~~~G~-------------~vv~v~~~~--~-------~~f~ld~~~L~ 739 (903)
...++..-.. .| ..|+...-+|-+....+ ...|- .+..+|... . ..+.-+++.++
T Consensus 107 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (420)
T TIGR00700 107 VENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAAR 186 (420)
T ss_pred HHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHH
Confidence 8877654321 22 45776676665533222 21111 112222210 0 00111245666
Q ss_pred HHhh---cCCCcEEEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 740 TILE---TVKKPWVYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 740 ~~l~---~~~~~~vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+.+. .....+.+|.-|-|.-+|.+++ .+.+++|.++|++||+++|.||+|.++.+.+... .....+..+
T Consensus 187 ~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~-------a~~~~~~~p 259 (420)
T TIGR00700 187 AIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMF-------ACEHEGPEP 259 (420)
T ss_pred HHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhH-------HHhhcCCCC
Confidence 6653 1122356666677566787665 5559999999999999999999998887666431 122222222
Q ss_pred CCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
-+.+|||.++ +|+|+||++++++ +++.+.... .+.+.++++|.++.+.|+.-.. +.+.+++.++.+.
T Consensus 260 -------Di~~lsK~l~-~G~pig~v~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~~~~~~~~~g~~ 328 (420)
T TIGR00700 260 -------DLITTAKSLA-DGLPLSGVTGRAE-IMDAPAPGGLGGTYAGNPLACAAALAVLAIIES--EGLIERARQIGRL 328 (420)
T ss_pred -------CEEEeecccc-CCcceEEEEecHH-HHhhcCCCCcCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 2446999998 9999999999987 888876432 3778889999999888742111 2356677777777
Q ss_pred HHHHHHHH
Q 043334 894 LESRSKRL 901 (903)
Q Consensus 894 y~~Rr~~l 901 (903)
++++.+.+
T Consensus 329 l~~~L~~l 336 (420)
T TIGR00700 329 VTDRLTTL 336 (420)
T ss_pred HHHHHHHH
Confidence 77776654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.2e-11 Score=132.13 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=104.0
Q ss_pred CcccCcchhHHHH--HHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCC
Q 043334 6 SIFIPEDWSFTFY--EGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKG 83 (903)
Q Consensus 6 ~vfiP~~w~~~~~--~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~ 83 (903)
++.+|.+|...+. ..+..+. ..++++|||+|||+|.++..++... ..+|+|+|.|+.|+..++......+.
T Consensus 97 ~~~~~~e~~s~~~~~~~l~~l~--~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~---- 169 (314)
T TIGR00452 97 GIKIDSEWRSDIKWDRVLPHLS--PLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDN---- 169 (314)
T ss_pred cccCCHHHHHHHHHHHHHHhcC--CCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhcc----
Confidence 6777877765433 2333332 2568999999999999999988763 45899999999999875432221111
Q ss_pred CCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccccc
Q 043334 84 QPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQ 163 (903)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~ 163 (903)
..++.+..+|+.++.... +||+|+++--....+
T Consensus 170 -----------~~~v~~~~~~ie~lp~~~--~FD~V~s~gvL~H~~---------------------------------- 202 (314)
T TIGR00452 170 -----------DKRAILEPLGIEQLHELY--AFDTVFSMGVLYHRK---------------------------------- 202 (314)
T ss_pred -----------CCCeEEEECCHHHCCCCC--CcCEEEEcchhhccC----------------------------------
Confidence 136888889988875433 799999642111100
Q ss_pred ccHHHHHHHHHHHhhcccCCcEEEEEeC---C--------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 164 FGLGLIARAVEEGIGVIKPSGIMIFNMG---G--------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 164 ~g~~~~~~~l~~~~~~LkpgG~ll~~~~---~--------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
....+++++++.|||||.+++... . .+....+..++++.||+.+++..
T Consensus 203 ----dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 203 ----SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred ----CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEe
Confidence 012679999999999999998421 1 11345667889999999988743
|
Known examples to date are restricted to the proteobacteria. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=125.51 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=67.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++.+. ..+|+++|+++++++.+++|++.+++ .+++++++|+.+..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~----------------~~v~~~~~D~~~~l 115 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKA----------------GNARVVNTNALSFL 115 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCC----------------CcEEEEEchHHHHH
Confidence 46799999999999999755443 57999999999999999999998886 47999999998765
Q ss_pred cCCCCceeEEEECCCCC
Q 043334 110 RDHDIQLERIVGCIPQI 126 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~ 126 (903)
.....+||+|++||||.
T Consensus 116 ~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 116 AQPGTPHNVVFVDPPFR 132 (199)
T ss_pred hhcCCCceEEEECCCCC
Confidence 32233699999999986
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-11 Score=138.44 Aligned_cols=152 Identities=18% Similarity=0.139 Sum_probs=105.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++.. +..+|+|+|+++.+++.+++|+..+|+ .+++++++|+.+.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~----------------~~v~~~~~D~~~~ 313 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL----------------TNIETKALDARKV 313 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CeEEEEeCCcccc
Confidence 57899999999999999999876 457999999999999999999998887 3699999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|||+........-+.......++. ......+...+++.+.++|||||.+++
T Consensus 314 ~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~----------------~~~l~~~q~~iL~~a~~~LkpGG~lvy 377 (444)
T PRK14902 314 HEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKED----------------IESLQEIQLEILESVAQYLKKGGILVY 377 (444)
T ss_pred cchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHH----------------HHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4222247999999999763321111000000000000 001122345789999999999999997
Q ss_pred EeCCC---CcHHHHHHHHHHCC-CeEEEE
Q 043334 189 NMGGR---PGQGVCKRLFERRG-FRVDKL 213 (903)
Q Consensus 189 ~~~~~---~~~~~l~~ll~~~g-f~~~~~ 213 (903)
.+.+. .....+...+++.+ |+.+..
T Consensus 378 stcs~~~~Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 378 STCTIEKEENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred EcCCCChhhhHHHHHHHHHhCCCcEEecc
Confidence 55433 34556666777663 776554
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=137.12 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=95.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|++.+++ ++++++++|+.+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~----------------~~~~~~~~d~~~~~ 294 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGL----------------DNLSFAALDSAKFA 294 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEECCHHHHH
Confidence 4579999999999999999965 57999999999999999999999887 47999999998765
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+|+.|||+-- +.. .+++.+. .++|++.+++.
T Consensus 295 ~~~~~~~D~vi~DPPr~G------~~~----------------------------------~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 295 TAQMSAPELVLVNPPRRG------IGK----------------------------------ELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred HhcCCCCCEEEECCCCCC------CcH----------------------------------HHHHHHH-hcCCCeEEEEE
Confidence 322236999999999741 111 2233332 37899999999
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
++.......+.. | .||++.++.
T Consensus 334 c~p~TlaRDl~~-L--~gy~l~~~~ 355 (374)
T TIGR02085 334 CNAQTMAKDIAE-L--SGYQIERVQ 355 (374)
T ss_pred eCHHHHHHHHHH-h--cCceEEEEE
Confidence 987666555543 4 689988873
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=130.27 Aligned_cols=269 Identities=10% Similarity=0.037 Sum_probs=164.7
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ ..+.+.+++.+.+.+.... ....+....+++.+.+..... ..+ .++++++++++
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~-~~~-~~~f~~sGseA 113 (421)
T PRK06777 36 DVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPID-GPA-KTAFFTTGAEA 113 (421)
T ss_pred eCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCC-CCc-eEEEeCCcHHH
Confidence 35677889986653 2333 4677888888888764321 112344566777777654321 112 68888888888
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHHHHH-HcCCE-------------EEEecCCCC-CC--cccCHHHHHHHhhc-
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVSAAR-FLKAN-------------IVNIPTESE-VG--FKMTEKTLVTILET- 744 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~~~-~~G~~-------------vv~v~~~~~-~~--f~ld~~~L~~~l~~- 744 (903)
...++..... .| ..|+...-+|-+....+. ..|.. +..++.... .+ ..-+++.+++.+..
T Consensus 114 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~ 193 (421)
T PRK06777 114 VENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKAD 193 (421)
T ss_pred HHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhc
Confidence 7776654321 23 457776766655433332 22210 111111110 00 00125667777652
Q ss_pred --CCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 745 --VKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 745 --~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
....+.++.-|-|+..|. +++.+.+++|.++|+++|+++|.||+|.++.+.+..+ + ...++..+ |
T Consensus 194 ~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~---~----~~~~~~~p---D-- 261 (421)
T PRK06777 194 IAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLF---A----MEYYDVKP---D-- 261 (421)
T ss_pred cCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchh---h----hhhcCCCC---C--
Confidence 122356666777788885 6899999999999999999999999998876666431 1 12222222 2
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+-+|||.++ +|+|+||++++++ +++.+.... .+.+.+++.|.++.+.|+.-.. +.+.+.+.++.+.++++.+
T Consensus 262 --iv~~sK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~ 335 (421)
T PRK06777 262 --LITMAKSLG-GGMPISAVVGRAE-VMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLE 335 (421)
T ss_pred --EEeeehhhc-CCCceEEEEEcHH-HHhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 227999998 9999999999987 888876443 3677899999999999952111 2334444444545544443
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=111.34 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=73.5
Q ss_pred EEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCC
Q 043334 35 AELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDI 114 (903)
Q Consensus 35 LDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~ 114 (903)
||+|||+|..+..+++. ++.+|+|+|+++++++.++++.... ++.+.++|+.+++.++ +
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~-------------------~~~~~~~d~~~l~~~~-~ 59 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE-------------------GVSFRQGDAEDLPFPD-N 59 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS-------------------TEEEEESBTTSSSS-T-T
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc-------------------CchheeehHHhCcccc-c
Confidence 89999999999999998 7899999999999999999887433 4669999999986554 4
Q ss_pred ceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 115 QLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 115 ~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+||+|+++--+.. + +....+++++.|+|||||+++|
T Consensus 60 sfD~v~~~~~~~~------~--------------------------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 60 SFDVVFSNSVLHH------L--------------------------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -EEEEEEESHGGG------S--------------------------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccceee------c--------------------------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999986411110 0 1244889999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.5e-11 Score=128.92 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=94.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|..+..+++.. +.+|+|+|+++.|++.|+++... .+++.+.++|+.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~------------------~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD------------------KNKIEFEANDILKK 111 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc------------------CCceEEEECCcccC
Confidence 356899999999999999998765 67999999999999999987632 14799999999875
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+.+. ++||+|+++.-.... .......++++++++|||||.+++
T Consensus 112 ~~~~-~~FD~V~s~~~l~h~------------------------------------~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 112 DFPE-NTFDMIYSRDAILHL------------------------------------SYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred CCCC-CCeEEEEEhhhHHhC------------------------------------CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4433 389999963211100 001123789999999999999998
Q ss_pred EeCC---------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG---------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~---------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... ......+.++++++||..+..
T Consensus 155 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 155 TDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 4321 012345567788888887765
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-11 Score=127.00 Aligned_cols=110 Identities=16% Similarity=0.344 Sum_probs=89.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||-|.++..+|+. |++|+|+|+++++|+.|+..+..+++ .+++.+....++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv-----------------~i~y~~~~~edl 118 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGV-----------------NIDYRQATVEDL 118 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccc-----------------cccchhhhHHHH
Confidence 47899999999999999999998 79999999999999999999988886 577888888887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+|. ++.+|-++ .+.+++.+.+++||||.+++
T Consensus 119 ~~~~-~~FDvV~cm--------------EVlEHv~d------------------------p~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 119 ASAG-GQFDVVTCM--------------EVLEHVPD------------------------PESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HhcC-CCccEEEEh--------------hHHHccCC------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 6553 599999962 23343222 23689999999999999999
Q ss_pred EeCCCCcH
Q 043334 189 NMGGRPGQ 196 (903)
Q Consensus 189 ~~~~~~~~ 196 (903)
..-.+...
T Consensus 160 STinrt~k 167 (243)
T COG2227 160 STINRTLK 167 (243)
T ss_pred eccccCHH
Confidence 66655433
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=126.16 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=97.9
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
++|||+|||+|..+..+++.+++.+|+|+|+|+++++.|++++...++ .+++++..+|+.+.+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl---------------~~~i~~~~~d~~~~~~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL---------------QGRIRIFYRDSAKDPFP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC---------------CcceEEEecccccCCCC
Confidence 479999999999999999988788999999999999999999987776 36899999998665333
Q ss_pred CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeC
Q 043334 112 HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMG 191 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~ 191 (903)
++||+|+++ .+.++.. ....+++++.++|||||.+++...
T Consensus 66 --~~fD~I~~~--------------~~l~~~~------------------------~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 66 --DTYDLVFGF--------------EVIHHIK------------------------DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred --CCCCEeehH--------------HHHHhCC------------------------CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 389999842 0011100 023789999999999999998432
Q ss_pred C---------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 192 G---------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 192 ~---------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
. ......+.+++.+.||...+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~ 143 (224)
T smart00828 106 IANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV 143 (224)
T ss_pred ccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence 1 1134556778999999987763
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-10 Score=129.47 Aligned_cols=271 Identities=12% Similarity=0.093 Sum_probs=171.4
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC--C-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM--S-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~--~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ .+|.+.+++.+.+.+... . ....+....+++.+.+....... + .++++++++++
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~-~v~f~~SGseA 113 (425)
T PRK07495 36 DKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFA-K-KTIFVTTGAEA 113 (425)
T ss_pred eCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCC-C-EEEECCchHHH
Confidence 35678899987663 2333 577788888888765322 1 22334556677777765432211 2 79999999998
Q ss_pred HHHHHHHhcc-C-CCeEEEcCCCcHHHHHHH-HHcC-------------CEEEEecCCCC-CCccc--CHHHHHHHhhc-
Q 043334 685 FNKLVLCCIL-E-GGTLCFPAGSNGNYVSAA-RFLK-------------ANIVNIPTESE-VGFKM--TEKTLVTILET- 744 (903)
Q Consensus 685 l~~ll~~l~~-p-GD~Vlv~~P~y~~~~~~~-~~~G-------------~~vv~v~~~~~-~~f~l--d~~~L~~~l~~- 744 (903)
...++..... . ..+|+...-+|-+....+ ...| ..++.+|.... .+... +.+.+++.+..
T Consensus 114 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~ 193 (425)
T PRK07495 114 VENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKAD 193 (425)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhc
Confidence 8877764321 2 346777676665432222 1111 02233333211 11100 13455666542
Q ss_pred --CCCcEEEEECCC-CCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 745 --VKKPWVYISGPT-INPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 745 --~~~~~vil~~P~-~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
....+.++.-|. +| +| .+++.+.+++|.++|++||+++|.||+|.++-..+..+ . .... +.
T Consensus 194 ~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~---a----~~~~-------gv 258 (425)
T PRK07495 194 VDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLF---A----MEHH-------EV 258 (425)
T ss_pred cCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCce---e----eccc-------CC
Confidence 222467777788 66 88 56899999999999999999999999998765544321 1 1111 23
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+.-+.+|||.++ +|+|+|+++++++ +++.+.... .+.+.+++.+.++.+.|+.-.. +.+.++++++.+.++++.
T Consensus 259 ~pDi~tlsK~l~-~G~pigav~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L 334 (425)
T PRK07495 259 AADLTTMAKGLA-GGFPLAAVTGRAE-IMDAPGPGGLGGTYGGNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRL 334 (425)
T ss_pred CCCEEeehhhhc-CCccceEEEEcHH-HHhccCCCCcCCCCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHH
Confidence 445789999997 8999999999987 888775432 3677888999977777742221 246677778888888777
Q ss_pred HHHh
Q 043334 899 KRLK 902 (903)
Q Consensus 899 ~~l~ 902 (903)
+.+.
T Consensus 335 ~~l~ 338 (425)
T PRK07495 335 ASLR 338 (425)
T ss_pred HHHH
Confidence 6653
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.27 E-value=4e-10 Score=128.20 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=130.5
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH----HcCCEEEE
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR----FLKANIVN 722 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~----~~G~~vv~ 722 (903)
.+...+-+..+++.++...|.. ..++++.+++|+..++.+++++||+|++++..|.+....++ ..|+++..
T Consensus 50 ~R~gnPt~~~le~~la~Le~g~-----~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~v~~ 124 (386)
T PF01053_consen 50 SRYGNPTVRALEQRLAALEGGE-----DALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVEVTF 124 (386)
T ss_dssp TTTC-HHHHHHHHHHHHHHT-S-----EEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSEEEE
T ss_pred eccccccHHHHHHHHHHhhccc-----ceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcEEEE
Confidence 3333456788888888887752 57888899999999999999999999999999999877664 46999988
Q ss_pred ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC-cEEEEecCCCCCccCCCCCCC
Q 043334 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG-ARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~-i~VI~DeaY~~l~f~~~~~s~ 801 (903)
++. -|++++++++++++ ++|++-+|. ||+..+.+ +++|+++|+++| +++|+|+.|+...+. .
T Consensus 125 ~d~-------~d~~~l~~~l~~~t-~~v~~Esps-NP~l~v~D---l~~i~~~a~~~g~~~~vVDnT~atp~~~-~---- 187 (386)
T PF01053_consen 125 VDP-------TDLEALEAALRPNT-KLVFLESPS-NPTLEVPD---LEAIAKLAKEHGDILVVVDNTFATPYNQ-N---- 187 (386)
T ss_dssp EST-------TSHHHHHHHHCTTE-EEEEEESSB-TTTTB------HHHHHHHHHHTTT-EEEEECTTTHTTTC------
T ss_pred eCc-------hhHHHHHhhccccc-eEEEEEcCC-Cccccccc---HHHHHHHHHHhCCceEEeeccccceeee-c----
Confidence 865 36899999999877 599999999 99988876 999999999998 999999999532110 0
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcccccce-eeEEEeCc-HHHHHHHHhCCC
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK-FGFLVLNH-PQLVDAFSSFPG 857 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR-iG~lv~~~-~~li~~l~~~~~ 857 (903)
+ +. - +-.|++.|.||.++..|-- .|.+++++ +++.+.+.....
T Consensus 188 ----p-L~---~-----GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~ 232 (386)
T PF01053_consen 188 ----P-LE---L-----GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRR 232 (386)
T ss_dssp ----G-GG---G-----T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHH
T ss_pred ----c-Cc---C-----CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhh
Confidence 1 11 1 3579999999999745544 56777665 447777765543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-11 Score=131.01 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=93.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||+|.++..++... ..+|+|+|+|+.++..++......+. ..++.+..+|+.++
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~---------------~~~i~~~~~d~e~l 184 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGN---------------DQRAHLLPLGIEQL 184 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCC---------------CCCeEEEeCCHHHC
Confidence 467899999999999999999874 45799999999998765543322211 14799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+. .++||+|+++--.. |.. ....+++++++.|+|||.+++
T Consensus 185 p~--~~~FD~V~s~~vl~--------------H~~------------------------dp~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 185 PA--LKAFDTVFSMGVLY--------------HRR------------------------SPLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred CC--cCCcCEEEECChhh--------------ccC------------------------CHHHHHHHHHHhcCCCcEEEE
Confidence 65 34899999631110 100 022679999999999999998
Q ss_pred EeC---C--------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMG---G--------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~---~--------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... . .+....+..+++++||+.+++.
T Consensus 225 ~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 225 ETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred EEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 421 0 1134566889999999988874
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-11 Score=130.34 Aligned_cols=103 Identities=21% Similarity=0.412 Sum_probs=84.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+++.+|+|+|+|+.|++.|+++. +++.++.+|+.++
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---------------------~~~~~~~~d~~~~ 88 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---------------------PDCQFVEADIASW 88 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---------------------CCCeEEECchhcc
Confidence 3568999999999999999999988899999999999999998774 3688999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .+||+|++|..+...++ ...+++++.+.|||||.+++
T Consensus 89 ~~~--~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~~~~ 128 (258)
T PRK01683 89 QPP--QALDLIFANASLQWLPD--------------------------------------HLELFPRLVSLLAPGGVLAV 128 (258)
T ss_pred CCC--CCccEEEEccChhhCCC--------------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 533 38999998754432111 12679999999999999999
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
..+.
T Consensus 129 ~~~~ 132 (258)
T PRK01683 129 QMPD 132 (258)
T ss_pred ECCC
Confidence 7654
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.7e-11 Score=123.13 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=92.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..++.+|+|+|+|+++++.+++|+..+++ .+++++.+|+.+..
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~----------------~~v~~~~~d~~~~~ 103 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV----------------KNVEVIEGSAPECL 103 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----------------CCeEEEECchHHHH
Confidence 57899999999999999999877778999999999999999999988776 47999999986532
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
......+|.++.. .. ..+..+++++.++|+|||.+++.
T Consensus 104 ~~~~~~~d~v~~~-----~~-------------------------------------~~~~~~l~~~~~~LkpgG~li~~ 141 (196)
T PRK07402 104 AQLAPAPDRVCIE-----GG-------------------------------------RPIKEILQAVWQYLKPGGRLVAT 141 (196)
T ss_pred hhCCCCCCEEEEE-----CC-------------------------------------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 2211245665421 00 00237799999999999999998
Q ss_pred eCCCCcHHHHHHHHHHC---CCeEEEE
Q 043334 190 MGGRPGQGVCKRLFERR---GFRVDKL 213 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~---gf~~~~~ 213 (903)
.........+.+.+++. ++..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 142 ASSLEGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred eecHHHHHHHHHHHHhcCCCCceEEEE
Confidence 77654444444556554 4555554
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.7e-11 Score=126.34 Aligned_cols=106 Identities=22% Similarity=0.398 Sum_probs=89.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..+|++|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.++..|++ +++++...|..+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~---------------~~v~v~l~d~rd 133 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLE---------------DNVEVRLQDYRD 133 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCC---------------cccEEEeccccc
Confidence 4579999999999999999999998 889999999999999999999988883 689999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... +||.||| +. +- ...|.+.+..+|+.+.++|+|||.++
T Consensus 134 ~~e----~fDrIvS------------vg--mf----------------------Ehvg~~~~~~ff~~~~~~L~~~G~~l 173 (283)
T COG2230 134 FEE----PFDRIVS------------VG--MF----------------------EHVGKENYDDFFKKVYALLKPGGRML 173 (283)
T ss_pred ccc----ccceeee------------hh--hH----------------------HHhCcccHHHHHHHHHhhcCCCceEE
Confidence 743 5999985 11 11 12344557799999999999999999
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 174 lh 175 (283)
T COG2230 174 LH 175 (283)
T ss_pred EE
Confidence 83
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.3e-11 Score=128.65 Aligned_cols=106 Identities=24% Similarity=0.372 Sum_probs=78.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||||||.|.+++.+|+++ +.+|+|+.+|++..+.+++.+...|+ .+++++..+|..+
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl---------------~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGL---------------EDRVEVRLQDYRD 123 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTS---------------SSTEEEEES-GGG
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEEeeccc
Confidence 4578999999999999999999998 78999999999999999999988887 3689999999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... +||.|++- . + .+| .|...+..+++++.++|||||.++
T Consensus 124 ~~~----~fD~IvSi---------~-~----~Eh----------------------vg~~~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 124 LPG----KFDRIVSI---------E-M----FEH----------------------VGRKNYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp -------S-SEEEEE---------S-E----GGG----------------------TCGGGHHHHHHHHHHHSETTEEEE
T ss_pred cCC----CCCEEEEE---------e-c----hhh----------------------cChhHHHHHHHHHHHhcCCCcEEE
Confidence 643 89999851 1 0 111 122335689999999999999999
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 164 lq 165 (273)
T PF02353_consen 164 LQ 165 (273)
T ss_dssp EE
T ss_pred EE
Confidence 73
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=123.65 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=82.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|+.+..+++..+ +.+|+|+|+++++++.|++|+..+++ ..+++++.+|+.+.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~---------------~~~v~~~~~d~~~~ 136 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY---------------WGVVEVYHGDGKRG 136 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCcEEEEECCcccC
Confidence 568999999999999999998764 46999999999999999999988776 24699999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... .+||+|+++.... .+.+++.+.|+|||++++
T Consensus 137 ~~~~-~~fD~Ii~~~~~~--------------------------------------------~~~~~l~~~L~~gG~lvi 171 (205)
T PRK13944 137 LEKH-APFDAIIVTAAAS--------------------------------------------TIPSALVRQLKDGGVLVI 171 (205)
T ss_pred CccC-CCccEEEEccCcc--------------------------------------------hhhHHHHHhcCcCcEEEE
Confidence 5433 4899998652211 223466788999999998
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
..+.
T Consensus 172 ~~~~ 175 (205)
T PRK13944 172 PVEE 175 (205)
T ss_pred EEcC
Confidence 7654
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-09 Score=126.70 Aligned_cols=269 Identities=10% Similarity=0.058 Sum_probs=164.8
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCC---CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSE---SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~---G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...||+..|- ..++ .++.+.+++.+.+.+..... -..+....+++.+.+..+...+ .++++++++++.
T Consensus 40 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~---~v~f~~SGseA~ 116 (433)
T PRK08117 40 VDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLD---CFFFSNSGAEAI 116 (433)
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCcHHHHH
Confidence 4677899997663 3444 56789999988887642211 1345567788888776532222 788888888877
Q ss_pred HHHHHHhcc-CC-CeEEEcCCCcHHHH-HHHHHcCC-------------EEEEecCCCCC--Ccc--------cCHHHHH
Q 043334 686 NKLVLCCIL-EG-GTLCFPAGSNGNYV-SAARFLKA-------------NIVNIPTESEV--GFK--------MTEKTLV 739 (903)
Q Consensus 686 ~~ll~~l~~-pG-D~Vlv~~P~y~~~~-~~~~~~G~-------------~vv~v~~~~~~--~f~--------ld~~~L~ 739 (903)
..++..... .| ..|+...-+|-+.. ......+. .+..+|..... .+. -+++.++
T Consensus 117 e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 196 (433)
T PRK08117 117 EGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLE 196 (433)
T ss_pred HHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHH
Confidence 777764221 22 45666666554422 22211110 11222221100 000 1455666
Q ss_pred HHhhc---CCCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 740 TILET---VKKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 740 ~~l~~---~~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+.++. ....+.++.-|-+.-.|.+ .+.+.+++|.++|++||+++|.||+|.++...|... . ....+-
T Consensus 197 ~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~---~----~~~~gv-- 267 (433)
T PRK08117 197 SLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWF---A----AQTFGV-- 267 (433)
T ss_pred HHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccch---h----HhhcCC--
Confidence 66542 1223566666764555665 578999999999999999999999998765555431 1 111111
Q ss_pred CCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
..-+.+|||.+| +|+++|+++++++ +++.+..... +.+.+++.+.++.+.|+.-.. +.+.+.+.++.+.
T Consensus 268 -----~pDi~t~sK~lg-~G~pigav~~~~~-i~~~~~~~~~~~T~~~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~ 338 (433)
T PRK08117 268 -----VPDIMTIAKGIA-SGLPLSAVVASKE-LMEQWPLGSHGTTFGGNPVACAAALATLEVIKE--EKLLDNANEMGAY 338 (433)
T ss_pred -----CCCEeehhhhcc-CCCcceeEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 122479999998 8999999999887 8888754322 566788899999999852211 2345566666666
Q ss_pred HHHHHHHH
Q 043334 894 LESRSKRL 901 (903)
Q Consensus 894 y~~Rr~~l 901 (903)
++++.+.+
T Consensus 339 l~~~L~~l 346 (433)
T PRK08117 339 ALERLEVL 346 (433)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=134.44 Aligned_cols=160 Identities=10% Similarity=0.063 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHH----HHHHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYV----SAARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~----~~~~~~G~~vv~v~~ 725 (903)
..+..+.+++.+++..|.+ . .|++++|+ +++..++.+++++||+|+++...|+... ..++..|++++.++
T Consensus 67 ~~pt~~~le~~la~l~g~~-~---~v~fsSG~-~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~v~~vd- 140 (437)
T PRK05613 67 TNPTVEALENRIASLEGGV-H---AVAFASGQ-AAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIEVTFVE- 140 (437)
T ss_pred cChHHHHHHHHHHHHhCCC-e---EEEeCCHH-HHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeEEEEEC-
Confidence 3455778888888888864 2 58888887 6666777788899999999999999874 34577899999997
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
+. .|++.+++++++++ ++|++.+|. ||+|.+.+ +++|.++|+++|+++|+|.+++.-.. ..
T Consensus 141 ~~-----~d~e~l~~~l~~~t-k~V~~e~~~-Np~~~v~d---i~~I~~la~~~gi~livD~t~a~g~~--~~------- 201 (437)
T PRK05613 141 NP-----DDPESWQAAVQPNT-KAFFGETFA-NPQADVLD---IPAVAEVAHRNQVPLIVDNTIATAAL--VR------- 201 (437)
T ss_pred CC-----CCHHHHHHhCCccC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCeEEEECCCccccc--cC-------
Confidence 32 27899999998887 488889998 99998888 88889999999999999999843111 00
Q ss_pred hhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
+ .. . +..+++.|++|.++..|.-+|-+++
T Consensus 202 p-~~----~----GaDivv~S~~K~l~G~gd~~gG~vv 230 (437)
T PRK05613 202 P-LE----L----GADVVVASLTKFYTGNGSGLGGVLI 230 (437)
T ss_pred h-HH----h----CCCEEEeeccceecCCCcceeEEEE
Confidence 1 11 1 2578999999999876766665554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-11 Score=112.73 Aligned_cols=98 Identities=21% Similarity=0.394 Sum_probs=72.5
Q ss_pred EEEeCCccCHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 34 VAELGCGNGWITIAIAEKW---LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 34 VLDlGCGtG~lsi~la~~~---~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
|||+|||+|..+..+++.+ +..+++|+|+|++|++.++++....+. +++++++|+.++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-----------------~~~~~~~D~~~l~~ 63 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-----------------KVRFVQADARDLPF 63 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-----------------TSEEEESCTTCHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-----------------ceEEEECCHhHCcc
Confidence 7999999999999999886 347999999999999999998865443 78999999998764
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.. ++||+|+++ .....++. .+....+++++.++|||||
T Consensus 64 ~~-~~~D~v~~~-----~~~~~~~~------------------------------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 64 SD-GKFDLVVCS-----GLSLHHLS------------------------------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp HS-SSEEEEEE------TTGGGGSS------------------------------HHHHHHHHHHHHHTEEEEE
T ss_pred cC-CCeeEEEEc-----CCccCCCC------------------------------HHHHHHHHHHHHHHhCCCC
Confidence 43 499999962 01011111 1223488999999999998
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-10 Score=133.69 Aligned_cols=149 Identities=16% Similarity=0.112 Sum_probs=104.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|..+..+++..++.+|+|+|+++.+++.+++|+..+|+ +++++++|+.++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-----------------~~~~~~~D~~~~ 305 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-----------------KATVIVGDARDP 305 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------------CeEEEEcCcccc
Confidence 367899999999999999999987667999999999999999999988876 478999999865
Q ss_pred ccC-CCCceeEEEECCCCCCCCCccchhhHHhh-hhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 109 CRD-HDIQLERIVGCIPQILNPNPDAMSKIITE-NASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 109 ~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
... ..++||.|++|||+........-+ ++.. ..++.. .........+++.+.+.|||||++
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p-~~~~~~~~~~l----------------~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHP-DIKWLRRPEDI----------------AALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCc-cccccCCHHHH----------------HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 321 123799999999987432211100 0000 000000 001133558999999999999999
Q ss_pred EEEeCC---CCcHHHHHHHHHHC-CCeEE
Q 043334 187 IFNMGG---RPGQGVCKRLFERR-GFRVD 211 (903)
Q Consensus 187 l~~~~~---~~~~~~l~~ll~~~-gf~~~ 211 (903)
++.+.+ ......+...++++ +|+..
T Consensus 369 vystcs~~~~Ene~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 369 LYATCSILPEENEQQIKAFLARHPDAELL 397 (427)
T ss_pred EEEeCCCChhhCHHHHHHHHHhCCCCEEe
Confidence 986643 33445656677665 46543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-11 Score=124.35 Aligned_cols=78 Identities=21% Similarity=0.115 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++++++.|++|+..+++ ++++++++|..+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----------------~~v~~~~~d~~~ 139 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----------------DNVIVIVGDGTQ 139 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC----------------CCeEEEECCccc
Confidence 4678999999999999999999864 35799999999999999999988876 479999999987
Q ss_pred cccCCCCceeEEEECC
Q 043334 108 YCRDHDIQLERIVGCI 123 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~Np 123 (903)
..... .+||+|+.++
T Consensus 140 ~~~~~-~~fD~Ii~~~ 154 (215)
T TIGR00080 140 GWEPL-APYDRIYVTA 154 (215)
T ss_pred CCccc-CCCCEEEEcC
Confidence 54333 3899998653
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=137.76 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=94.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++.. +.+|+|+|+|++|++.|++|.... ..++++.++|+.+..
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~-----------------~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR-----------------KCSVEFEVADCTKKT 327 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC-----------------CCceEEEEcCcccCC
Confidence 57899999999999999999876 679999999999999999887422 247999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. ++||+|+++-.+...++ ..+++++++++|||||.+++.
T Consensus 328 ~~~-~~fD~I~s~~~l~h~~d--------------------------------------~~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 328 YPD-NSFDVIYSRDTILHIQD--------------------------------------KPALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred CCC-CCEEEEEECCcccccCC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 433 38999997422221110 227899999999999999985
Q ss_pred eCC--------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGG--------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~--------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... ......+.++++++||..+..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 369 DYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred EeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeeeee
Confidence 321 112334466777777777644
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=128.46 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.|++.+++++..+++ ++++..+|+.+..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l-----------------~v~~~~~D~~~~~ 180 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL-----------------NIRTGLYDINSAS 180 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC-----------------ceEEEEechhccc
Confidence 4569999999999999999986 68999999999999999999877765 6888889987754
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|+++..+...+ .+....+++++.++|+|||.+++.
T Consensus 181 ~--~~~fD~I~~~~vl~~l~------------------------------------~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 181 I--QEEYDFILSTVVLMFLN------------------------------------RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred c--cCCccEEEEcchhhhCC------------------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 3 33899999764433211 011337899999999999997663
Q ss_pred eC-------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG-------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~-------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. .......++++++ +|++...
T Consensus 223 ~~~~~~~~~~~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 223 CAMDTEDYPCPMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred EecccccCCCCCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 21 1234455556664 3777665
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.8e-11 Score=127.94 Aligned_cols=155 Identities=23% Similarity=0.260 Sum_probs=118.1
Q ss_pred cCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCC
Q 043334 4 IPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKG 83 (903)
Q Consensus 4 ~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~ 83 (903)
.|+.+.| -..+...+|.+.. +|..|||.-||||.+.+.+... |++++|+|++..|++-|+.|+...++
T Consensus 177 ~p~s~~P--~lAR~mVNLa~v~----~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i---- 244 (347)
T COG1041 177 RPGSMDP--RLARAMVNLARVK----RGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGI---- 244 (347)
T ss_pred CcCCcCH--HHHHHHHHHhccc----cCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCc----
Confidence 3555555 3344445566554 5899999999999999997655 89999999999999999999988876
Q ss_pred CCcchhhhcccCCcEEEEEc-cccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccc
Q 043334 84 QPIYDAEKKTLLDRVEFHES-DLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVED 162 (903)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~g-Dl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~ 162 (903)
....++.. |+..++.... ++|.|++.|||-.......
T Consensus 245 ------------~~~~~~~~~Da~~lpl~~~-~vdaIatDPPYGrst~~~~----------------------------- 282 (347)
T COG1041 245 ------------EDYPVLKVLDATNLPLRDN-SVDAIATDPPYGRSTKIKG----------------------------- 282 (347)
T ss_pred ------------CceeEEEecccccCCCCCC-ccceEEecCCCCccccccc-----------------------------
Confidence 35656666 9988875543 6999999999986543221
Q ss_pred cccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 163 QFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 163 ~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
..-.++++++++.+.++||+||.++|-.+... ...+.+.||++...+..+
T Consensus 283 ~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~-----~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 283 EGLDELYEEALESASEVLKPGGRIVFAAPRDP-----RHELEELGFKVLGRFTMR 332 (347)
T ss_pred ccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc-----hhhHhhcCceEEEEEEEe
Confidence 11235678999999999999999999877221 236778899998886655
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=123.73 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=102.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++..++ .+|+++|+++.+++.+++|++.+++ .+++++++|...+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~----------------~~v~~~~~D~~~~ 134 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV----------------LNVAVTNFDGRVF 134 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----------------CcEEEecCCHHHh
Confidence 6789999999999999999987643 5999999999999999999998887 4799999998776
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||.|+.|||+....-...-+.....+.++.. ..-......+++.+.+.|||||+++.
T Consensus 135 ~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~----------------~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 135 GAAV-PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDI----------------QEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred hhhc-cCCCEEEEcCCCCCCcccccChhhhhcCCHHHH----------------HHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 4332 369999999998743322111110000000000 00012344799999999999999998
Q ss_pred EeCCCC---cHHHHHHHHHHC-CCe
Q 043334 189 NMGGRP---GQGVCKRLFERR-GFR 209 (903)
Q Consensus 189 ~~~~~~---~~~~l~~ll~~~-gf~ 209 (903)
.+.+.. ....++..+++. ++.
T Consensus 198 stcs~~~~Ene~vv~~~l~~~~~~~ 222 (264)
T TIGR00446 198 STCSLEPEENEAVVDYLLEKRPDVV 222 (264)
T ss_pred EeCCCChHHHHHHHHHHHHhCCCcE
Confidence 765543 344666666664 344
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.4e-11 Score=127.38 Aligned_cols=188 Identities=15% Similarity=0.208 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC--C----CeEEEcCCCcHHHHHHHHHcCCEEEEec
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE--G----GTLCFPAGSNGNYVSAARFLKANIVNIP 724 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p--G----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~ 724 (903)
++|.+.|++.-.. -|-....+..|++++|+++++..++.+|... . -.|+...|.|+.|........-......
T Consensus 46 ~eL~~~Ir~LH~~-VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~ 124 (363)
T PF04864_consen 46 PELERQIRRLHRV-VGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWA 124 (363)
T ss_dssp HHHHHHHHHHHHH-H-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEE
T ss_pred HHHHHHHHHHHHH-hccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccc
Confidence 5555555554433 3544444669999999999999999998644 1 2799999999999998866654444433
Q ss_pred CCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCch
Q 043334 725 TESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDL 804 (903)
Q Consensus 725 ~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~ 804 (903)
-+. ..|. .. +....-+=++++|| ||.|.+ .+.++ +..+..+|.|-+|..-.|.+-..
T Consensus 125 Gda-~~~~-------~~-~~~~~~IElVTSPN-NPDG~l-----r~~V~---~g~~~k~I~D~AYYWPhyTpI~~----- 181 (363)
T PF04864_consen 125 GDA-SNFK-------NS-DNPSPYIELVTSPN-NPDGQL-----REAVL---NGSSGKVIHDLAYYWPHYTPITA----- 181 (363)
T ss_dssp EEC-CCGT-------T--S-CCGEEEEEESS--TTT-----------SS---TTTEEEEEEE-TT-STTTS---S-----
T ss_pred ccH-Hhhc-------cC-CCCCCeEEEEeCCC-CCcccc-----cchhc---CCCCcceeeeeeeecccccccCC-----
Confidence 322 2232 00 00122367899999 999988 44444 56677789999996544433221
Q ss_pred hhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 805 EGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 805 ~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+.|..|.+.|+||.-|-+|-|+||++..++++.++|.++.. +.++|.=+|.-+.++|.
T Consensus 182 ------------~aD~DiMLFT~SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk 241 (363)
T PF04864_consen 182 ------------PADHDIMLFTLSKLTGHAGSRFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILK 241 (363)
T ss_dssp -------------B--SEEEEEHHHHCS-GGG-EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHH
T ss_pred ------------CCCCceEEEEEecccCccccccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHH
Confidence 12578999999999999999999999999989999988764 88999999999999983
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.8e-11 Score=126.11 Aligned_cols=112 Identities=19% Similarity=0.283 Sum_probs=84.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. ....++++|+.+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~---------------------~~~~~~~~d~~~~~ 98 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD---------------------AADHYLAGDIESLP 98 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC---------------------CCCCEEEcCcccCc
Confidence 4678999999999999998875 689999999999999998774 13467889998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|++|.+....++ ...++.++.++|+|||.+++.
T Consensus 99 ~~~-~~fD~V~s~~~l~~~~d--------------------------------------~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 99 LAT-ATFDLAWSNLAVQWCGN--------------------------------------LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred CCC-CcEEEEEECchhhhcCC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 443 38999998754432111 226799999999999999997
Q ss_pred eCCCCcHHHHHHHH
Q 043334 190 MGGRPGQGVCKRLF 203 (903)
Q Consensus 190 ~~~~~~~~~l~~ll 203 (903)
.........+.+..
T Consensus 140 ~~~~~~~~el~~~~ 153 (251)
T PRK10258 140 TLVQGSLPELHQAW 153 (251)
T ss_pred eCCCCchHHHHHHH
Confidence 65544434433333
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-09 Score=120.31 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=123.4
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH-HHHHHHcCCEEEEecCC--------
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY-VSAARFLKANIVNIPTE-------- 726 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~-~~~~~~~G~~vv~v~~~-------- 726 (903)
.+++.+++++|.+ .++.++.++.++.++....++|||.| +..+|... ...+...|+..+.+..+
T Consensus 82 ~LE~~vAe~lG~e-----~aV~v~sGTaAl~ll~~l~v~pGd~V--p~n~~f~Tt~ahI~~~Ga~fvDi~~d~a~~~~~~ 154 (460)
T PRK13237 82 HLEETVQEYYGFK-----HVVPTHQGRGAENLLSRIAIKPGQYV--PGNMYFTTTRYHQELNGGIFVDIIIDEAHDAQSD 154 (460)
T ss_pred HHHHHHHHHHCCC-----eEEEeCCHHHHHHHHHHhCCCCcCEE--CCccchHhhHHHHHhCCcEEEeeecccccccccC
Confidence 3455555556765 35666666666666677778999965 55545444 44478888866555322
Q ss_pred CCCCcccCHHHHHHHhhcCCC---cEEEEECCCCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC--ccC---CC
Q 043334 727 SEVGFKMTEKTLVTILETVKK---PWVYISGPTINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFSGL--EFN---YE 797 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~---~~vil~~P~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l--~f~---~~ 797 (903)
....+++|++++++++++++. +++.+.+++ |-. |...|.+++++|.++|+++|+.||+|-+...- .|- ..
T Consensus 155 ~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itv-n~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~ 233 (460)
T PRK13237 155 HPFKGNVDLDKLQALIDEVGAENIAYICLAVTV-NLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREE 233 (460)
T ss_pred CCCCCCcCHHHHHHHhccccCCccCceEEEEec-ccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccc
Confidence 124678999999999986432 357788887 888 79999999999999999999999999987411 111 00
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~ 855 (903)
.....++......+.. .-.+...|++|.++.+- -|+++.+++++.++++..
T Consensus 234 ~y~~~~i~ei~~e~~s-----~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~ 284 (460)
T PRK13237 234 GYQDKSIKEIVHEMFS-----YADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKEL 284 (460)
T ss_pred ccCCCcHhHHhhhccC-----cCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHh
Confidence 0100111111222222 24567888999997651 389999999899999876
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.5e-10 Score=126.66 Aligned_cols=168 Identities=13% Similarity=0.142 Sum_probs=120.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~ 725 (903)
..+..+++++.+++..|.+ ..++++++++++..++.+++++||+|+++.+.|+.. ...+...|++++.+++
T Consensus 62 ~~P~~~~lE~~la~leg~~-----~av~~sSG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~v~fvd~ 136 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENAE-----HALSFSSGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIHVDYIDT 136 (384)
T ss_pred CChhHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcEEEEECC
Confidence 3456778888888887764 345555556899988999999999999998765554 4566788999999998
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
++.+.+.+++ +++ ++|++.+|+ |||+.+.+ +++|.++|++++ +++|.++.. .+.+.+
T Consensus 137 ~~~~~~~l~~--------~~t-klv~~e~~s-npt~~v~D---i~~I~~la~~~~--lvVD~t~~s-~~~~~p------- 193 (384)
T PRK06434 137 DRLNSLDFDP--------SNY-DLIYAESIT-NPTLKVPD---IKNVSSFCHEND--VIVDATFAS-PYNQNP------- 193 (384)
T ss_pred CChhheeecC--------CCe-eEEEEEcCC-CCCceeec---HHHHHHHHHHcC--eEEECCCCC-cccCCc-------
Confidence 6533443322 134 589999999 99999865 888899999998 455999731 122221
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~ 855 (903)
+. . +-.+++.|.+|.++.+| .=.|.++++++++.+.+...
T Consensus 194 --l~----~----gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~ 234 (384)
T PRK06434 194 --LD----L----GADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVER 234 (384)
T ss_pred --hh----c----CCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHH
Confidence 11 1 35789999999997545 44677777666577766644
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=131.09 Aligned_cols=148 Identities=16% Similarity=0.176 Sum_probs=105.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|..+..+++..+ +.+|+|+|+|+.+++.+++|+...|+ .+++++++|+.+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----------------~~v~~~~~Da~~ 312 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI----------------TIIETIEGDARS 312 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC----------------CeEEEEeCcccc
Confidence 3578999999999999999988654 45999999999999999999988887 479999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhh-hhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITE-NASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+... .+||+|+.+||+....-...-+ +... ..++.+ ..-......+++.+.++|||||++
T Consensus 313 ~~~~--~~fD~Vl~D~Pcsg~g~~~r~p-~~~~~~~~~~~----------------~~l~~~q~~iL~~a~~~lkpgG~l 373 (445)
T PRK14904 313 FSPE--EQPDAILLDAPCTGTGVLGRRA-ELRWKLTPEKL----------------AELVGLQAELLDHAASLLKPGGVL 373 (445)
T ss_pred cccC--CCCCEEEEcCCCCCcchhhcCc-chhhcCCHHHH----------------HHHHHHHHHHHHHHHHhcCCCcEE
Confidence 7533 3799999999986433211100 0000 000000 000123447899999999999999
Q ss_pred EEEeCCCC---cHHHHHHHHHHC-CCeEE
Q 043334 187 IFNMGGRP---GQGVCKRLFERR-GFRVD 211 (903)
Q Consensus 187 l~~~~~~~---~~~~l~~ll~~~-gf~~~ 211 (903)
++.+.+.. ....++..++.+ +|...
T Consensus 374 vystcs~~~~Ene~~v~~~l~~~~~~~~~ 402 (445)
T PRK14904 374 VYATCSIEPEENELQIEAFLQRHPEFSAE 402 (445)
T ss_pred EEEeCCCChhhHHHHHHHHHHhCCCCEEe
Confidence 99776543 445667778776 46543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-10 Score=121.08 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.++.+|||+|||+|.++..+++..+..+|+|+|+++.|++.+.++++.. .++.++.+|..+
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~------------------~nv~~i~~D~~~ 131 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER------------------KNIIPILADARK 131 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc------------------CCcEEEECCCCC
Confidence 34678999999999999999999876569999999999999887776432 368899999875
Q ss_pred cc--cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YC--RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~--~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.. .....+||+|+++.+. + .....+++++.++|||||.
T Consensus 132 ~~~~~~l~~~~D~i~~d~~~---------p-------------------------------~~~~~~L~~~~r~LKpGG~ 171 (226)
T PRK04266 132 PERYAHVVEKVDVIYQDVAQ---------P-------------------------------NQAEIAIDNAEFFLKDGGY 171 (226)
T ss_pred cchhhhccccCCEEEECCCC---------h-------------------------------hHHHHHHHHHHHhcCCCcE
Confidence 31 1111369999854210 0 0012568999999999999
Q ss_pred EEEEeCC-----CCcH----HHHHHHHHHCCCeEEEEE
Q 043334 186 MIFNMGG-----RPGQ----GVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 186 ll~~~~~-----~~~~----~~l~~ll~~~gf~~~~~~ 214 (903)
+++.+.. .... ....+++++.||+.++..
T Consensus 172 lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 172 LLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVV 209 (226)
T ss_pred EEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 9994221 1111 123478999999988774
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-10 Score=122.09 Aligned_cols=247 Identities=15% Similarity=0.095 Sum_probs=164.6
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCC
Q 043334 625 SFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAG 704 (903)
Q Consensus 625 p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P 704 (903)
+.-.+.+.+.+++.++-..+...||..+...++++++++.+|. . .+++..+++++....+.+.++||+.|++..-
T Consensus 8 n~~g~~~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~-~----a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~ 82 (342)
T COG2008 8 NVAGPTPEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGK-E----AALFVPSGTQANQLALAAHCQPGESVICHET 82 (342)
T ss_pred ccCCCCHHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCC-c----eEEEecCccHHHHHHHHHhcCCCCeEEEecc
Confidence 3345778899998887545667899999999999999999998 3 3666666666666778889999999999887
Q ss_pred CcHHHHH--HHHHc-CCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHHH
Q 043334 705 SNGNYVS--AARFL-KANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTVC 776 (903)
Q Consensus 705 ~y~~~~~--~~~~~-G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~ia 776 (903)
.+..... ....+ |+..+ +..+..+..+++++++..+.+. ..+++++.+.. |--|++||.+++++|.++|
T Consensus 83 aHi~~~E~Ga~~~~~~~~~~--~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~-te~GtVy~l~el~~i~~~~ 159 (342)
T COG2008 83 AHIYTDECGAPEFFGGGQKL--PIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTA-TEGGTVYPLDELEAISAVC 159 (342)
T ss_pred ccceecccCcHHHHcCCcee--ccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeecc-CCCceecCHHHHHHHHHHH
Confidence 7654322 22333 33333 3333345679999999977642 23466666554 6679999999999999999
Q ss_pred HhCCcEEEEecCCC--CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 777 AKYGARVVIDTAFS--GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 777 ~k~~i~VI~DeaY~--~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+++|+.|..|-+-- -+...+.. ...... ...++..++||..+.|+ |-++..+.++++.+..
T Consensus 160 k~~~l~LHmDGAR~~nA~valg~~---------~~~~~~-----~~D~v~~~~tK~g~~~~---gAiv~gn~~~~~~a~~ 222 (342)
T COG2008 160 KEHGLPLHMDGARLANALVALGVA---------LKTIKS-----YVDSVSFCLTKGGGAPV---GAIVFGNRDFAKRARR 222 (342)
T ss_pred HHhCCceeechHHHHHHHHHcCCC---------HHHHHh-----hCCEEEEecccCCccee---eeEEEcCHHHHHHHHH
Confidence 99999999998641 12222211 111222 25667788999886665 9888877779988876
Q ss_pred CCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 855 FPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 855 ~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
... ...-+.+.-.....+|+ +........|-..+.+.+.+..
T Consensus 223 ~rK~~Ggl~~k~r~laA~~~~~l~--~~~~~~~~~Han~mA~~La~~~ 268 (342)
T COG2008 223 WRKRAGGLMRKARFLAAQGLYALE--DDVWRLAADHANAMAARLAEGL 268 (342)
T ss_pred HHHHhcccHhhhhHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHhh
Confidence 542 34445555566666663 3211222344444455554443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.1e-10 Score=130.28 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=106.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|..+..++...+ +.+|+|+|+++.+++.+++|+...|+ .++++.++|...
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~----------------~~v~~~~~Da~~ 299 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL----------------SSIEIKIADAER 299 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CeEEEEECchhh
Confidence 3678999999999999999998763 56999999999999999999998887 468999999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+.....++||.|+++||+.........+ ++....+.+-. ..-..+..++++.+.+.|||||.++
T Consensus 300 l~~~~~~~fD~Vl~DaPCsg~G~~~~~p-~~~~~~~~~~~---------------~~l~~~Q~~iL~~a~~~LkpGG~Lv 363 (431)
T PRK14903 300 LTEYVQDTFDRILVDAPCTSLGTARNHP-EVLRRVNKEDF---------------KKLSEIQLRIVSQAWKLLEKGGILL 363 (431)
T ss_pred hhhhhhccCCEEEECCCCCCCccccCCh-HHHHhCCHHHH---------------HHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 6422234799999999997544322111 11111000000 0011245688999999999999999
Q ss_pred EEeCCC---CcHHHHHHHHHHC-CCeE
Q 043334 188 FNMGGR---PGQGVCKRLFERR-GFRV 210 (903)
Q Consensus 188 ~~~~~~---~~~~~l~~ll~~~-gf~~ 210 (903)
+.+.+. .....+++.++++ +|..
T Consensus 364 YsTCs~~~eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 364 YSTCTVTKEENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EEECCCChhhCHHHHHHHHHhCCCcEE
Confidence 876653 3455666666654 4654
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=125.90 Aligned_cols=191 Identities=14% Similarity=0.070 Sum_probs=133.5
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCC------C---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNM------S---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~------~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
++.+.|+.+.-. ++|+.+.+++.+.+..+.. . .+.....+++++ + +.+|.+. + +|++|+|+++++
T Consensus 26 ~~~iyld~~a~g-~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~--~-~v~~~~~~t~~l 99 (406)
T TIGR01814 26 NAVIYLDGNSLG-LMPKAARNALKEELDKWAKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKE--D-EVVVMNTLTINL 99 (406)
T ss_pred CCcEEecCCCcC-cCcHHHHHHHHHHHHHHHHhhhccCccCCCChhhhhhhhcc-c-cccCCCC--C-cEEEeCCchHHH
Confidence 568999977655 4588888888776654321 1 122233344444 3 5677653 3 899999999999
Q ss_pred HHHHHHhccCCC---eEEEcCCCcHHH----HHHHHHcCCEE----EEecCCCCCCcccCHHHHHHHhh---cCCCcEEE
Q 043334 686 NKLVLCCILEGG---TLCFPAGSNGNY----VSAARFLKANI----VNIPTESEVGFKMTEKTLVTILE---TVKKPWVY 751 (903)
Q Consensus 686 ~~ll~~l~~pGD---~Vlv~~P~y~~~----~~~~~~~G~~v----v~v~~~~~~~f~ld~~~L~~~l~---~~~~~~vi 751 (903)
+.++.+++++|+ .|++....|+.. ...++..|+++ +.++.+ +++.+|++.+++.++ +++ ++|+
T Consensus 100 ~~~~~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~~t-~lv~ 176 (406)
T TIGR01814 100 HLLLASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPR--EEETLRLEDILDTIEKNGDDI-AVIL 176 (406)
T ss_pred HHHHHHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccC--CCCccCHHHHHHHHHhcCCCe-EEEE
Confidence 999988876653 688888889873 23456778887 455553 345578899988774 445 4899
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+++++ |.||.+++ +++|.++|+++|+++++|.+.+. +..+ ++ +... +..+++.|..|.+
T Consensus 177 ~~~v~-~~tG~~~~---~~~i~~~~~~~g~~~~vD~aq~~---G~~~---id-------~~~~----gvD~~~~s~hK~l 235 (406)
T TIGR01814 177 LSGVQ-YYTGQLFD---MAAITRAAHAKGALVGFDLAHAV---GNVP---LD-------LHDW----GVDFACWCTYKYL 235 (406)
T ss_pred Eeccc-cccceecC---HHHHHHHHHHcCCEEEEEccccc---CCcc---cc-------cccC----CCCEEEEcCcccc
Confidence 99998 99999998 88899999999999999998853 1111 11 1111 3578999999976
Q ss_pred -cccc
Q 043334 832 -LTGA 835 (903)
Q Consensus 832 -g~~G 835 (903)
|.||
T Consensus 236 ~g~pG 240 (406)
T TIGR01814 236 NAGPG 240 (406)
T ss_pred CCCCC
Confidence 3456
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.8e-10 Score=126.27 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=82.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++++|+.+++++|+ +.+++.+++|+...++ .++++++.+|+.+..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl---------------~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV---------------ADRMRGIAVDIYKES 212 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCc---------------cceEEEEecCccCCC
Confidence 567999999999999999999999999999998 7899999999988776 368999999998653
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+ .+|+|+.+ ...+. .+.+....+++++++.|+|||++++.
T Consensus 213 ~~---~~D~v~~~-------------~~lh~-----------------------~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 213 YP---EADAVLFC-------------RILYS-----------------------ANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CC---CCCEEEeE-------------hhhhc-----------------------CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 32 46988621 00111 11122347899999999999999883
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.9e-10 Score=126.55 Aligned_cols=195 Identities=15% Similarity=0.197 Sum_probs=130.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc--
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF-- 731 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f-- 731 (903)
..+..+..++.||.+.. .++++|++.++..++.++++|||.|+++..++-+....+...|+++++++.. .+.+
T Consensus 68 I~eAe~~aA~~fGAd~t----~flvnGsT~g~~a~i~a~~~~gd~VLv~RN~HkSv~~alil~ga~Pvyi~p~-~~~~gi 142 (417)
T PF01276_consen 68 IKEAEELAARAFGADKT----FFLVNGSTSGNQAMIMALCRPGDKVLVDRNCHKSVYNALILSGAIPVYIPPE-DNEYGI 142 (417)
T ss_dssp HHHHHHHHHHHHTESEE----EEESSHHHHHHHHHHHHHTTTTCEEEEETT--HHHHHHHHHHTEEEEEEEEE-E-TTS-
T ss_pred HHHHHHHHHHhcCCCeE----EEEecCchHHHHHHHHHhcCCCCEEEEcCCcHHHHHHHHHHcCCeEEEecCC-ccccCC
Confidence 45667777888997755 9999999999999999999999999999999999999999999999999875 3332
Q ss_pred --ccCH-----HHHHHHhhcCC----CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-CccCCCCC
Q 043334 732 --KMTE-----KTLVTILETVK----KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEFNYEGW 799 (903)
Q Consensus 732 --~ld~-----~~L~~~l~~~~----~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~ 799 (903)
.+++ +.++++++... .++++|++|+ --|.++. +++|+++|.++++.|++||+|+. +.|..-+.
T Consensus 143 ~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PT--Y~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F~~lp~ 217 (417)
T PF01276_consen 143 IGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPT--YYGVCYD---IKEIAEICHKHGIPLLVDEAHGAHFGFHPLPR 217 (417)
T ss_dssp BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS---TTSEEE----HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGT
T ss_pred ccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCC--CCeEEEC---HHHHHHHhcccCCEEEEEccccccccCCCCcc
Confidence 2455 88988887542 2359999996 7899988 89999999999999999999964 34442111
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee-EEEeCcHH--HHHHHHh---CCCCCCCcHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQ--LVDAFSS---FPGLSKPHSTVRY 867 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~--li~~l~~---~~~~~~~s~~~Q~ 867 (903)
+... +- .+.. .+..++++.|.-|++ +++.-+ ++...... -.+++.+ +.++.+||.+.-.
T Consensus 218 ~a~~---~g--ad~~--~~~~~~vvqS~HKtL--~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmA 282 (417)
T PF01276_consen 218 SALA---LG--ADRP--NDPGIIVVQSTHKTL--PALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMA 282 (417)
T ss_dssp TCSS---TT--SS-C--TSBEEEEEEEHHHHS--SS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHH
T ss_pred chhh---cc--Cccc--cccceeeeechhhcc--cccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHH
Confidence 1111 01 1111 123789999999997 576665 55554431 1233332 3345566655433
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.7e-10 Score=133.88 Aligned_cols=120 Identities=19% Similarity=0.246 Sum_probs=89.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++.+|+.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-----------------~~ie~I~gDa~dLp 480 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-----------------RSWNVIKGDAINLS 480 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-----------------CCeEEEEcchHhCc
Confidence 5789999999999999999998889999999999999999998875443 26889999998764
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||+|++|+++....+ +++.. +...+......++++++++|||||.+++
T Consensus 481 ~~fedeSFDvVVsn~vLH~L~s--yIp~~-----------------------g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 481 SSFEKESVDTIVYSSILHELFS--YIEYE-----------------------GKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred cccCCCCEEEEEEchHHHhhhh--hcccc-----------------------cccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 1 12248999999876642110 00000 0011223455899999999999999999
Q ss_pred EeC
Q 043334 189 NMG 191 (903)
Q Consensus 189 ~~~ 191 (903)
..+
T Consensus 536 ~D~ 538 (677)
T PRK06922 536 RDG 538 (677)
T ss_pred EeC
Confidence 654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=117.67 Aligned_cols=76 Identities=22% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|+++..+++..+ +.+|+|+|+++++++.|++|+...++ .+++++++|...
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~----------------~~v~~~~gd~~~ 138 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY----------------DNVEVIVGDGTL 138 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCeEEEECCccc
Confidence 3678999999999999999998764 36999999999999999999988776 479999999877
Q ss_pred cccCCCCceeEEEE
Q 043334 108 YCRDHDIQLERIVG 121 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~ 121 (903)
..... ++||+|++
T Consensus 139 ~~~~~-~~fD~I~~ 151 (212)
T PRK13942 139 GYEEN-APYDRIYV 151 (212)
T ss_pred CCCcC-CCcCEEEE
Confidence 65433 48999984
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=117.66 Aligned_cols=151 Identities=18% Similarity=0.323 Sum_probs=101.2
Q ss_pred hhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCC----------cchh-
Q 043334 21 LNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQP----------IYDA- 89 (903)
Q Consensus 21 L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~----------~~~~- 89 (903)
|+.+++.++.+..+|||||.+|.+++.+|+.++...|.|+|||+..|..|+++++...-.....+ +...
T Consensus 49 Lk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is 128 (288)
T KOG2899|consen 49 LKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS 128 (288)
T ss_pred hhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc
Confidence 44456667889999999999999999999999999999999999999999999864321100000 0000
Q ss_pred -------h-hcccCCcE-------EEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccc
Q 043334 90 -------E-KKTLLDRV-------EFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYC 154 (903)
Q Consensus 90 -------~-~~~~~~~v-------~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 154 (903)
+ ...+++++ .+-..|+++.. ...||+|+| .
T Consensus 129 ~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~---~~~fDiIlc--------------------------------L 173 (288)
T KOG2899|consen 129 QRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMI---QPEFDIILC--------------------------------L 173 (288)
T ss_pred ccccccccccccCCcchhcccccEEEecchhhhhc---cccccEEEE--------------------------------E
Confidence 0 00112222 22333344222 237888874 1
Q ss_pred cccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHC
Q 043334 155 ALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERR 206 (903)
Q Consensus 155 al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~ 206 (903)
++..|+.-.+|.+-+.++|..++++|.|||+++++--........++..+..
T Consensus 174 SiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~kaar~~e~~ 225 (288)
T KOG2899|consen 174 SITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKKAARRSEKL 225 (288)
T ss_pred EeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHHHHHHHHHh
Confidence 4455666677777788999999999999999999876555444444444443
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=126.64 Aligned_cols=129 Identities=17% Similarity=0.180 Sum_probs=96.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+..+||||||+|.+++.+|+..|...++|+|+++.+++.|.+++..+++ .++.++++|+....
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL----------------~NV~~i~~DA~~ll 185 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL----------------KNLLIINYDARLLL 185 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEECCHHHhh
Confidence 45689999999999999999999999999999999999999999988887 58999999986542
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. -.++++|.|+.|.|.- .+.... ++. ....+++++.++|+|||.+.+
T Consensus 186 ~~~~~~s~D~I~lnFPdP-W~KkrH-----RRl--------------------------v~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 186 ELLPSNSVEKIFVHFPVP-WDKKPH-----RRV--------------------------ISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred hhCCCCceeEEEEeCCCC-ccccch-----hhc--------------------------cHHHHHHHHHHHcCCCcEEEE
Confidence 1 1234899999886522 111110 000 023789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHC
Q 043334 189 NMGGRPGQGVCKRLFERR 206 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~ 206 (903)
.+....-.....+.+.+.
T Consensus 234 ~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 234 RTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEECHHHHHHHHHHHHhC
Confidence 776554444434455444
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.6e-10 Score=116.36 Aligned_cols=133 Identities=18% Similarity=0.228 Sum_probs=89.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++ | +.. .+++++++|+.+
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~----------------~~v~~i~~D~~~ 102 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI----------------VGVDFLQGDFRD 102 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC----------------CCcEEEecCCCC
Confidence 4678999999999999999999864 35999999998 1 112 368999999987
Q ss_pred cc-------cCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 108 YC-------RDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 108 ~~-------~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
.. ....++||+|++|+ |+........... ...+...+++++.++
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~----------------------------~~~~~~~~L~~~~~~ 154 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPR----------------------------AMYLVELALDMCRDV 154 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHH----------------------------HHHHHHHHHHHHHHH
Confidence 52 11234899999986 5543211100000 011234789999999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
|||||.+++.+........+...++ ..|..+++..+.
T Consensus 155 LkpGG~~vi~~~~~~~~~~~l~~l~-~~f~~v~~~Kp~ 191 (209)
T PRK11188 155 LAPGGSFVVKVFQGEGFDEYLREIR-SLFTKVKVRKPD 191 (209)
T ss_pred cCCCCEEEEEEecCcCHHHHHHHHH-hCceEEEEECCc
Confidence 9999999996654444333222322 368888775543
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-09 Score=117.72 Aligned_cols=190 Identities=17% Similarity=0.126 Sum_probs=145.5
Q ss_pred CCcHHHHHHHHHHHHcc--CC----CCCc--hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH--hcc---
Q 043334 628 PIPSLVKAAIFESFARQ--NM----SESE--IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC--CIL--- 694 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y--~~----~~G~--~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~--l~~--- 694 (903)
|+.+.+++++...+..+ ++ ..|. ..+.+..++.+++..|.+.. +|++|+|++++.++++.. ...
T Consensus 12 p~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga~~~---eIiFTSG~TEsnNlaI~g~~~a~~~~ 88 (386)
T COG1104 12 PVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGADPE---EIIFTSGATESNNLAIKGAALAYRNA 88 (386)
T ss_pred CCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCCCCC---eEEEecCCcHHHHHHHHhhHHhhhcc
Confidence 56788899988887663 22 1232 23456677888888888764 899999999999998887 322
Q ss_pred -CCCeEEEcCCCcHHHHHHHHHc---CCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 695 -EGGTLCFPAGSNGNYVSAARFL---KANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 695 -pGD~Vlv~~P~y~~~~~~~~~~---G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
.|.+|+++.-.++...+.++.+ |.+|.++|++. +..+|+++|++++++++. +|-+..-| |-||++.+ ++
T Consensus 89 ~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~--~G~v~~e~L~~al~~~T~-LVSim~aN-nE~G~IQp---I~ 161 (386)
T COG1104 89 QKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDS--NGLVDLEQLEEALRPDTI-LVSIMHAN-NETGTIQP---IA 161 (386)
T ss_pred cCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCC--CCeEcHHHHHHhcCCCce-EEEEEecc-cCeeeccc---HH
Confidence 4679999999999999888777 99999999986 345999999999999884 89999998 99999998 89
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+|.++|+++++++.+|-+-+ ++.-+. + +... .-.+.-.|--|.+|.-| +|.+...+.
T Consensus 162 ei~~i~k~~~i~fHvDAvQa---~Gkipi---~-------~~~~----~vD~ls~SaHK~~GpkG--iGaLyv~~~ 218 (386)
T COG1104 162 EIGEICKERGILFHVDAVQA---VGKIPI---D-------LEEL----GVDLLSFSAHKFGGPKG--IGALYVRPG 218 (386)
T ss_pred HHHHHHHHcCCeEEEehhhh---cCceec---c-------cccc----CcceEEeehhhccCCCc--eEEEEECCC
Confidence 99999999999999998763 222221 1 1111 13456667779999888 788887553
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-10 Score=130.93 Aligned_cols=151 Identities=15% Similarity=0.192 Sum_probs=105.2
Q ss_pred ccCCcccCc--chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 3 VIPSIFIPE--DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 3 ~~p~vfiP~--~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
+.|+.|... .....+++.+..... ..++.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|+..+++
T Consensus 264 ~~~~~F~Q~N~~~~~~l~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~~~~~- 339 (431)
T TIGR00479 264 LSARDFFQVNSGQNEKLVDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAELNGI- 339 (431)
T ss_pred ECCCceeecCHHHHHHHHHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHHHhCC-
Confidence 556667653 233333443332211 234579999999999999999987 56999999999999999999999887
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQ 157 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~ 157 (903)
++++++.+|+.+.... ...+||+|+.|||..-.. .
T Consensus 340 ---------------~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~~------~--------------------- 377 (431)
T TIGR00479 340 ---------------ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGCA------A--------------------- 377 (431)
T ss_pred ---------------CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCCC------H---------------------
Confidence 4899999999765321 123699999999975211 0
Q ss_pred ccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 158 GFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 158 ~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.+++.+. .++|++.+++.+........ .+.+.+.||++..+.
T Consensus 378 -------------~~l~~l~-~l~~~~ivyvsc~p~tlard-~~~l~~~gy~~~~~~ 419 (431)
T TIGR00479 378 -------------EVLRTII-ELKPERIVYVSCNPATLARD-LEFLCKEGYGITWVQ 419 (431)
T ss_pred -------------HHHHHHH-hcCCCEEEEEcCCHHHHHHH-HHHHHHCCeeEEEEE
Confidence 3344333 37899988887764433333 346778899887763
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9e-10 Score=127.93 Aligned_cols=149 Identities=14% Similarity=0.122 Sum_probs=104.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.+++|+..+|+ .+++++++|..+.
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~----------------~~v~~~~~D~~~~ 315 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL----------------KSIKILAADSRNL 315 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC----------------CeEEEEeCChhhc
Confidence 578999999999999999998764 35999999999999999999999887 4799999999876
Q ss_pred cc---CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CR---DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~---~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.. ...++||.|+.|||..........+.......++.. ..-..+...+++.+.++|||||+
T Consensus 316 ~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~----------------~~l~~~Q~~iL~~a~~~lkpgG~ 379 (434)
T PRK14901 316 LELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKI----------------QELAPLQAELLESLAPLLKPGGT 379 (434)
T ss_pred ccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHH----------------HHHHHHHHHHHHHHHHhcCCCCE
Confidence 42 112379999999997643222111110000000000 00112345899999999999999
Q ss_pred EEEEeCCC---CcHHHHHHHHHHC-CCeE
Q 043334 186 MIFNMGGR---PGQGVCKRLFERR-GFRV 210 (903)
Q Consensus 186 ll~~~~~~---~~~~~l~~ll~~~-gf~~ 210 (903)
++..+.+. .....+...++++ +|+.
T Consensus 380 lvystcsi~~~Ene~~v~~~l~~~~~~~~ 408 (434)
T PRK14901 380 LVYATCTLHPAENEAQIEQFLARHPDWKL 408 (434)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCcEe
Confidence 98765443 4455667777776 4664
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=121.00 Aligned_cols=106 Identities=16% Similarity=0.329 Sum_probs=80.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+.|++|||+|||+|.++..||+. +++|+|+|++++||+.|++....+... ......++++.+.|....
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~----------~~~~~y~l~~~~~~~E~~ 155 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVL----------EGAIAYRLEYEDTDVEGL 155 (282)
T ss_pred cCCceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchh----------ccccceeeehhhcchhhc
Confidence 34688999999999999999998 799999999999999999986544331 112234678888887776
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. +||+|+| + ++.+|- ...+.+++.+.+.|||||.+++
T Consensus 156 ~~----~fDaVvc------------s--evleHV------------------------~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 156 TG----KFDAVVC------------S--EVLEHV------------------------KDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred cc----ccceeee------------H--HHHHHH------------------------hCHHHHHHHHHHHhCCCCceEe
Confidence 43 6999985 2 222321 1134789999999999999998
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=114.68 Aligned_cols=137 Identities=23% Similarity=0.245 Sum_probs=96.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCE---------EEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSK---------VYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVE 99 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~---------V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~ 99 (903)
.++..|||..||+|.+.+..+....... ++|.|+++++++.|++|+...+++ ..+.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~---------------~~i~ 91 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE---------------DYID 91 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C---------------GGEE
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC---------------CceE
Confidence 3578999999999999999888876666 999999999999999999888873 5699
Q ss_pred EEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 100 FHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 100 ~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
+.+.|+.++.... +.+|.||+||||-..-.. . .....+|..+++++.++
T Consensus 92 ~~~~D~~~l~~~~-~~~d~IvtnPPyG~r~~~---~---------------------------~~~~~ly~~~~~~~~~~ 140 (179)
T PF01170_consen 92 FIQWDARELPLPD-GSVDAIVTNPPYGRRLGS---K---------------------------KDLEKLYRQFLRELKRV 140 (179)
T ss_dssp EEE--GGGGGGTT-SBSCEEEEE--STTSHCH---H---------------------------HHHHHHHHHHHHHHHCH
T ss_pred EEecchhhccccc-CCCCEEEECcchhhhccC---H---------------------------HHHHHHHHHHHHHHHHH
Confidence 9999999987333 389999999999842110 0 11235677999999999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
|++ ..+++..... . +++.+...+++..+....
T Consensus 141 l~~-~~v~l~~~~~-~---~~~~~~~~~~~~~~~~~~ 172 (179)
T PF01170_consen 141 LKP-RAVFLTTSNR-E---LEKALGLKGWRKRKLYNG 172 (179)
T ss_dssp STT-CEEEEEESCC-C---HHHHHTSTTSEEEEEEET
T ss_pred CCC-CEEEEEECCH-H---HHHHhcchhhceEEEEEe
Confidence 999 4444443332 2 244667778887776543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-09 Score=120.95 Aligned_cols=203 Identities=13% Similarity=0.103 Sum_probs=155.6
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CC--C-CCchH--HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NM--S-ESEID--VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~--~-~G~~~--lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
.+.+.+.|+.+... |.++.|++++...+..+ ++ . +|... -.++.++.+++..|.+.. +|++|+|+|+++
T Consensus 40 ~~~~~vyld~~at~-p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInAd~~---dIiFts~ATEs~ 115 (428)
T KOG1549|consen 40 HGTRPVYLDNQATG-PMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINADPS---DIVFTSGATESN 115 (428)
T ss_pred CCCccEEEecCcCC-CCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCCCCC---cEEEeCCchHHH
Confidence 56678888877654 57888999988887653 22 2 33322 246667777887777655 699999999999
Q ss_pred HHHHHHhcc-CCC----eEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCC
Q 043334 686 NKLVLCCIL-EGG----TLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI 757 (903)
Q Consensus 686 ~~ll~~l~~-pGD----~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~ 757 (903)
++++..... .+| .|++..-.|+.....+ +..|.+++.+|... +...|.+.+++.++++++ ++.+..-+
T Consensus 116 Nlvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~--~~~~d~~~~~~~i~~~T~-lv~I~~Vn- 191 (428)
T KOG1549|consen 116 NLVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVED--SGLVDISKLREAIRSKTR-LVSIMHVN- 191 (428)
T ss_pred HHHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCc--cccccHHHHHHhcCCCce-EEEEEecc-
Confidence 999988743 566 8999888888766555 55699999999973 445899999999999884 99999998
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
|-+|.+++ +++|..+|+++++.+++|-+.+- +.-+ .+ +..+ +-..+..|.-|.||.+|
T Consensus 192 n~~gv~~P---v~EI~~icr~~~v~v~~DaAQav---G~i~---vD----V~el-------n~D~~s~s~HK~ygp~~-- 249 (428)
T KOG1549|consen 192 NEIGVLQP---VKEIVKICREEGVQVHVDAAQAV---GKIP---VD----VQEL-------NADFLSISAHKIYGPPG-- 249 (428)
T ss_pred cCcccccc---HHHHHHHhCcCCcEEEeehhhhc---CCcc---cc----HHHc-------CchheeeecccccCCCc--
Confidence 99999999 88999999999999999998841 1111 11 1222 24567888999999999
Q ss_pred eeEEEeCc
Q 043334 838 FGFLVLNH 845 (903)
Q Consensus 838 iG~lv~~~ 845 (903)
+|++.+..
T Consensus 250 iGaLYvr~ 257 (428)
T KOG1549|consen 250 IGALYVRR 257 (428)
T ss_pred ceEEEEcc
Confidence 99999875
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-09 Score=119.19 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~ 726 (903)
.+.+..+.+.++...|.+ +.++.+.++.++..++..++..|+.|++.+..|......+ ...|++...++++
T Consensus 76 nPt~~~le~~iaal~ga~-----~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 76 NPTRDVLESGIAALEGAA-----HALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred CCchHHHHHHHHHHhCCc-----eEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeechh
Confidence 455778888888877754 3666677777888889999999999999999999877765 4578888888764
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
|++.+++++.+++ ++|++-+|. ||++.+.. +++|.++|+++|++||+|+.++...+.. +
T Consensus 151 -------~~~~~~~~i~~~t-~~V~~ESPs-NPll~v~D---I~~l~~la~~~g~~vvVDnTf~~p~~~~-p-------- 209 (409)
T KOG0053|consen 151 -------DLKKILKAIKENT-KAVFLESPS-NPLLKVPD---IEKLARLAHKYGFLVVVDNTFGSPYNQD-P-------- 209 (409)
T ss_pred -------hHHHHHHhhccCc-eEEEEECCC-CCcccccc---HHHHHHHHhhCCCEEEEeCCcCcccccC-h--------
Confidence 4788899998877 599999999 99999976 8889999999999999999996543321 1
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~ 857 (903)
+. . +-.|+++|.+|.+|..+-=+ |.++.+..++.+.+...+.
T Consensus 210 -L~----l----GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~ 252 (409)
T KOG0053|consen 210 -LP----L----GADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE 252 (409)
T ss_pred -hh----c----CCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH
Confidence 11 1 24799999999997554444 5666665668888887765
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.5e-09 Score=121.00 Aligned_cols=208 Identities=11% Similarity=0.083 Sum_probs=140.6
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCC-----CCc-hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMS-----ESE-IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~-----~G~-~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
++..+.|.+ +.++.+.+++.+.+..|... .|. .+-.+.+++.+++..|.+ ..++++++++++..++.
T Consensus 88 v~~tNlg~s--~l~~~v~eav~~~~~~~~~le~~l~~g~~g~r~~~~e~~lA~l~Gae-----~a~vv~sgtaAl~l~l~ 160 (464)
T PRK04311 88 VLHTNLGRA--LLSEAAIEAVTEAARGYSNLEYDLATGKRGSRDRALAALLCALTGAE-----DALVVNNNAAAVLLALN 160 (464)
T ss_pred EEeccCCCC--CCCHHHHHHHHHHHhcccccccchhhcccchHHHHHHHHHHHHhCCC-----eEEEECCHHHHHHHHHH
Confidence 334444442 36788999998888766421 111 122357778888877864 24455556688887775
Q ss_pred HhccCCCeEEEcCCCcHH------HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc--c-
Q 043334 691 CCILEGGTLCFPAGSNGN------YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT--G- 761 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~------~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT--G- 761 (903)
+ +.+||+|++++..+.. ....++..|++++.++... ..+++++++++++++ ++|++.+++ ||+ |
T Consensus 161 ~-l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~~----~t~~~dle~aI~~~T-klV~~vh~s-N~~i~G~ 233 (464)
T PRK04311 161 A-LAAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTTN----RTHLRDYEQAINENT-ALLLKVHTS-NYRIEGF 233 (464)
T ss_pred H-hCCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCCC----CCCHHHHHHhcCccC-eEEEEEcCC-Ccccccc
Confidence 5 5799999999864432 2345678899999998642 146899999999887 599999998 993 4
Q ss_pred -cCCCHHHHHHHHHHHHhCCcEEEEecCCCCC----ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 762 -LLYSNKEIENILTVCAKYGARVVIDTAFSGL----EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 762 -~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l----~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
...+ +++|+++|+++|+++|+|...+.+ .|.-... +.+...-.. +..++++|.+|.+|.|
T Consensus 234 ~~~~d---l~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~------p~~~~~l~~----GaDiv~fSg~K~LgGp-- 298 (464)
T PRK04311 234 TKEVS---LAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDE------PTVQELLAA----GVDLVTFSGDKLLGGP-- 298 (464)
T ss_pred CCcCC---HHHHHHHHHHcCCeEEEECCCcccccchhccCCCC------CchhhHHhc----CCcEEEecCcccccCC--
Confidence 3444 899999999999999999964322 1210000 011111111 3579999999998745
Q ss_pred eeeEEEeCcHHHHHHHHh
Q 043334 837 KFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~ 854 (903)
..|++++.++ +++.+.+
T Consensus 299 ~~G~i~g~~~-li~~l~~ 315 (464)
T PRK04311 299 QAGIIVGKKE-LIARLKK 315 (464)
T ss_pred ceEEEEEcHH-HHHHHhh
Confidence 5899999877 8887774
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-09 Score=117.69 Aligned_cols=167 Identities=13% Similarity=0.172 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~ 726 (903)
.+-+.++++.++...|.. ..+.++.+++++..++.+++++||+|++++..|++....+ +..|.++..++..
T Consensus 62 nPT~~~lE~~~a~LEg~~-----~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~ 136 (396)
T COG0626 62 NPTRDALEEALAELEGGE-----DAFAFSSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPG 136 (396)
T ss_pred CccHHHHHHHHHHhhCCC-----cEEEecCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCC
Confidence 556788888888865432 5777888899999999999999999999999988866554 5689999888652
Q ss_pred CCCCcccCHHHHHHHhh-cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 727 SEVGFKMTEKTLVTILE-TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~-~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
+.+.+.+++. +++ ++|++-+|+ |||-.+.+ +.+|.++|+++|+.+|+|+.|..-.+..+
T Consensus 137 -------~~~~~~~~~~~~~t-k~v~lEtPs-NP~l~v~D---I~~i~~~A~~~g~~vvVDNTfatP~~q~P-------- 196 (396)
T COG0626 137 -------DDEALEAAIKEPNT-KLVFLETPS-NPLLEVPD---IPAIARLAKAYGALVVVDNTFATPVLQRP-------- 196 (396)
T ss_pred -------ChHHHHHHhcccCc-eEEEEeCCC-Cccccccc---HHHHHHHHHhcCCEEEEECCcccccccCh--------
Confidence 4556666666 467 599999999 99988876 99999999999999999999964333221
Q ss_pred hhhhhhccCCCCCCceEEEccCchhcccccceee-EEEeCcHHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQLVDAF 852 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~li~~l 852 (903)
+. . +-.|+++|.+|.++..+-=+| .++++++.+.+.+
T Consensus 197 --L~----~----GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~ 234 (396)
T COG0626 197 --LE----L----GADIVVHSATKYLGGHSDVLGGVVLTPNEELYELL 234 (396)
T ss_pred --hh----c----CCCEEEEeccccccCCcceeeeEEecChHHHHHHH
Confidence 11 1 357999999999986555554 4555676566655
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-09 Score=127.27 Aligned_cols=149 Identities=16% Similarity=0.129 Sum_probs=104.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++..++.+|+|+|+++.+++.+++|++..|++ .++.+..+|.....
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~---------------~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT---------------IKAETKDGDGRGPS 302 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC---------------eEEEEecccccccc
Confidence 578999999999999999999877679999999999999999999988862 24555778876543
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||.|+.+||+....-....+.......+++ -.....+...+++++.++|||||.+++
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~----------------~~~l~~lQ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRD----------------IAELAELQSEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhcCCHHH----------------HHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 2 12237999999999885443222111000000000 001122345899999999999999998
Q ss_pred EeCCC---CcHHHHHHHHHHCC-Ce
Q 043334 189 NMGGR---PGQGVCKRLFERRG-FR 209 (903)
Q Consensus 189 ~~~~~---~~~~~l~~ll~~~g-f~ 209 (903)
.+.+. .....+...++++. |.
T Consensus 367 stcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 367 ATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred EeCCCChhhCHHHHHHHHHhCCCCe
Confidence 76554 46666677777763 53
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=115.22 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=82.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++.++ ..+++|+|+++.+++.+++++..+++ ..++.++.+|+.+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 115 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL---------------SGNVEFVQGDAEAL 115 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc---------------ccCeEEEecccccC
Confidence 468999999999999999999876 58999999999999999999865543 24789999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++--....+ ....+++.+.+.|+|||.+++
T Consensus 116 ~~~~-~~~D~I~~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 116 PFPD-NSFDAVTIAFGLRNVP--------------------------------------DIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred CCCC-CCccEEEEecccccCC--------------------------------------CHHHHHHHHHHhccCCcEEEE
Confidence 5432 4899998531111000 023678999999999999887
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 157 ~ 157 (239)
T PRK00216 157 L 157 (239)
T ss_pred E
Confidence 3
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-10 Score=126.72 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=98.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+|++|||+.|-||.+++.+|.. +..+|++||+|..+++.|++|+.+||++ .+++.|+++|++++.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~--------------~~~~~~i~~Dvf~~l 281 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLD--------------GDRHRFIVGDVFKWL 281 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCC--------------ccceeeehhhHHHHH
Confidence 5899999999999999997764 3449999999999999999999999985 357999999999886
Q ss_pred cCC---CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RDH---DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~~---~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
... +.+||+||.+||-+....... . .....|..++..+.+.|+|||++
T Consensus 282 ~~~~~~g~~fDlIilDPPsF~r~k~~~-~----------------------------~~~rdy~~l~~~~~~iL~pgG~l 332 (393)
T COG1092 282 RKAERRGEKFDLIILDPPSFARSKKQE-F----------------------------SAQRDYKDLNDLALRLLAPGGTL 332 (393)
T ss_pred HHHHhcCCcccEEEECCcccccCcccc-h----------------------------hHHHHHHHHHHHHHHHcCCCCEE
Confidence 533 238999999999987654332 1 12233668999999999999999
Q ss_pred EEEeCCCC
Q 043334 187 IFNMGGRP 194 (903)
Q Consensus 187 l~~~~~~~ 194 (903)
++......
T Consensus 333 ~~~s~~~~ 340 (393)
T COG1092 333 VTSSCSRH 340 (393)
T ss_pred EEEecCCc
Confidence 99665443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.11 E-value=6e-10 Score=113.89 Aligned_cols=104 Identities=22% Similarity=0.304 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.++||+|||.|..++.||++ |..|+++|+|+.+++.+++.+...++ .++..+.|+.+.
T Consensus 29 ~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l-----------------~i~~~~~Dl~~~ 89 (192)
T PF03848_consen 29 LKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGL-----------------DIRTRVADLNDF 89 (192)
T ss_dssp S-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT------------------TEEEEE-BGCCB
T ss_pred cCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCc-----------------eeEEEEecchhc
Confidence 45789999999999999999998 89999999999999999888877776 499999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+. .||+|++.-.+.+ +... ....+++...+.++|||.+++
T Consensus 90 ~~~~--~yD~I~st~v~~f------L~~~------------------------------~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 90 DFPE--EYDFIVSTVVFMF------LQRE------------------------------LRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp S-TT--TEEEEEEESSGGG------S-GG------------------------------GHHHHHHHHHHTEEEEEEEEE
T ss_pred cccC--CcCEEEEEEEecc------CCHH------------------------------HHHHHHHHHHhhcCCcEEEEE
Confidence 6543 8999985321111 1111 123678899999999999888
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 132 ~ 132 (192)
T PF03848_consen 132 V 132 (192)
T ss_dssp E
T ss_pred E
Confidence 4
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-09 Score=120.30 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=151.0
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC----------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM----------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~----------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.|+|--++|. +++.+++++...+.. |.. .....++.....+..++.||.++. +|-.-+|+++
T Consensus 49 ~~~l~LiasEN~--~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~a---nvqp~Sg~~A 123 (493)
T PRK13580 49 RSSLKLIASENY--SSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHA---YVQPHSGADA 123 (493)
T ss_pred hcCceEeccccc--CCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcc---cccCCCcHHH
Confidence 467888777775 466777776665543 211 111344455556667778888876 7888888887
Q ss_pred HHHHHHHHhccC-------------------------------CCeEEEcCCCcHHHHHH-----HHHcCCEEEEecCCC
Q 043334 684 LFNKLVLCCILE-------------------------------GGTLCFPAGSNGNYVSA-----ARFLKANIVNIPTES 727 (903)
Q Consensus 684 al~~ll~~l~~p-------------------------------GD~Vlv~~P~y~~~~~~-----~~~~G~~vv~v~~~~ 727 (903)
.+.. +.++++| ||+|+..++..+.+... +.....+.+.++++.
T Consensus 124 n~~v-~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~ 202 (493)
T PRK13580 124 NLVA-FWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDP 202 (493)
T ss_pred HHHH-HHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchhhheeeeEecccCc
Confidence 7764 6778776 89998887765544222 112225667777764
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
+ ...+|.+++++.+++++ +.|+++..+ |=+ ...+ +++|.++|+++|+++++|+++.--.+.+...
T Consensus 203 ~-~g~iD~d~l~~~~~~~~-plvii~g~S-~~~-~~~d---l~~i~eia~~~gA~L~VD~AH~~Gligg~~~-------- 267 (493)
T PRK13580 203 D-TGLLDYDEIAALAREFK-PLILVAGYS-AYP-RRVN---FAKLREIADEVGAVLMVDMAHFAGLVAGKVF-------- 267 (493)
T ss_pred c-cCccCHHHHHHHHhhcC-CEEEEeCcc-ccC-CCcC---HHHHHHHHHHcCCEEEEECchhhceeccccc--------
Confidence 3 35699999999999877 478888776 554 4666 8888888999999999999997545543321
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
....... .+..++++|++|++. |-+.|+++++++ +++.+.+... .+++..+...++..++
T Consensus 268 ~~~~~~~---~~~D~vtgT~hKaL~--GP~GG~I~~~~~-l~~~L~~a~P~i~gg~l~p~iAA~avAl 329 (493)
T PRK13580 268 TGDEDPV---PHADIVTTTTHKTLR--GPRGGLVLAKKE-YADAVDKGCPLVLGGPLPHVMAAKAVAL 329 (493)
T ss_pred hhhcCCC---CCCcEEEeCChhhcc--CCCeEEEEecHH-HHHHHhhCCCcccCCCccHHHHHHHHHH
Confidence 0000011 125689999999983 444599999877 8888854433 3344444333333333
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=123.36 Aligned_cols=201 Identities=15% Similarity=0.148 Sum_probs=136.9
Q ss_pred CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH
Q 043334 629 IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN 708 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~ 708 (903)
+.+.+.+++.++. .....||..+....+++.+++.+|.+.. ++ +.+++.+-..++.+++.|++.|++..+++..
T Consensus 7 ~~~~m~~a~~~a~-~gd~~Yg~D~~~~~l~~~i~~l~g~e~a----~f-~~sGT~An~~al~~~~~~~~~vi~~~~aHi~ 80 (290)
T PF01212_consen 7 PTPAMLEAMAAAN-VGDDAYGEDPTTARLEERIAELFGKEAA----LF-VPSGTMANQLALRAHLRPGESVICADTAHIH 80 (290)
T ss_dssp S-HHEEHHHHHTT-SB-CCTTSSHHHHHHHHHHHHHHTSSEE----EE-ESSHHHHHHHHHHHHHHTTEEEEEETTEHHH
T ss_pred CCHHHHHHHHccc-cCCcccCCChhHHHHHHHHHHHcCCCEE----EE-eCCCChHHHHHHHHHHhcCCceeccccceee
Confidence 5667788885543 3334689999999999999999998643 54 4555666666788888999999999998764
Q ss_pred HH---HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcEEEEECCCCCCc-ccCCCHHHHHHHHHHHHhC
Q 043334 709 YV---SAARFLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPWVYISGPTINPT-GLLYSNKEIENILTVCAKY 779 (903)
Q Consensus 709 ~~---~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~vil~~P~~NPT-G~v~s~eel~eI~~ia~k~ 779 (903)
.. ......|+++++++... +.++|+++|++.+.. ..+++|+|++|+ |-. |.++|.+++++|.++|+++
T Consensus 81 ~~E~ga~~~~~G~~~~~l~~~~--~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~-~~~GG~~~s~~el~ai~~~a~~~ 157 (290)
T PF01212_consen 81 FDETGAIEELSGAKLIPLPSDD--DGKLTPEDLEAAIEEHGAHHPQPAVVSLENTT-ELAGGTVYSLEELRAISELAREH 157 (290)
T ss_dssp HSSTTHHHHHTTCEEEEEBECT--GTBB-HHHHHHHHHHHTGTSGGEEEEEEESSB-TTTTSB---HHHHHHHHHHHHHH
T ss_pred eeccchhhHhcCcEEEECCCcc--cCCCCHHHHHHHhhhccccCCCccEEEEEecC-cCCCCeeCCHHHHHHHHHHHHhC
Confidence 32 33466999999999864 246999999999876 234689999998 764 8999999999999999999
Q ss_pred CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 780 GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 780 ~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
|+.+..|-+- +. +... .+...+..+.. .-.++--|+||..++++ |-+++-++++++...
T Consensus 158 gl~lhmDGAR--l~-~a~~----~~~~~~~e~~~-----~~D~v~~~~tK~~g~~~---Gavl~~~~~~i~~~~ 216 (290)
T PF01212_consen 158 GLPLHMDGAR--LA-NAAA----ALGVSLAEIAA-----GADSVSFGGTKNGGAPG---GAVLAGNKEFIAKAR 216 (290)
T ss_dssp T-EEEEEETT--HH-HHHC----HHHHHHHHHHT-----TSSEEEEETTSTT-SSS---EEEEEESHHHHHHHH
T ss_pred ceEEEEehhh--HH-Hhhh----cccccHHHHhh-----hCCEEEEEEEccccccc---ceEEEechHHHHHHH
Confidence 9999999875 21 1110 00011222222 24677889999998776 655544444655443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=118.16 Aligned_cols=268 Identities=11% Similarity=0.037 Sum_probs=164.4
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccC---CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQN---MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~---~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...||+..|. ..++ ..+.+.+++.+.+.+.. ...+..+.+..+++.+.+....... + .++++++++++
T Consensus 52 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~-~v~f~~sGseA 129 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHE-K-RSALFNSGAEA 129 (443)
T ss_pred eCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC-C-EEEEeCCcHHH
Confidence 35677889987653 3344 57788889888876532 1123456677788888876542211 2 67777777888
Q ss_pred HHHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHc-CC-------------EEEEecCCC--CC--CcccC--------HH
Q 043334 685 FNKLVLCCI--LEGGTLCFPAGSNGNYVSAARFL-KA-------------NIVNIPTES--EV--GFKMT--------EK 736 (903)
Q Consensus 685 l~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~-G~-------------~vv~v~~~~--~~--~f~ld--------~~ 736 (903)
...++.... ...++|+...++|-+....+... +. .+..+|... .+ ++..+ .+
T Consensus 130 ~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (443)
T PRK06058 130 VENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAIT 209 (443)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHH
Confidence 877776321 22368888898887765443221 10 112222110 00 00011 22
Q ss_pred HHHHHhhcCCCcEEEEECCCCCCcccC--CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC
Q 043334 737 TLVTILETVKKPWVYISGPTINPTGLL--YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS 814 (903)
Q Consensus 737 ~L~~~l~~~~~~~vil~~P~~NPTG~v--~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~ 814 (903)
.+++.+.... .+.++..|- +..|-+ .+.+.+++|.++|++||+++|.||++.++...|..+ . ....+-.
T Consensus 210 ~l~~~~~~~~-iAavi~EPi-~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~f---a----~~~~gv~ 280 (443)
T PRK06058 210 VIEKQVGADN-LAAVIIEPI-QGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWF---A----CEHEGIV 280 (443)
T ss_pred HHHHhhCCCc-eEEEEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhh---H----HHhcCCC
Confidence 2333333233 366778887 666543 458899999999999999999999998765444321 1 1112222
Q ss_pred CCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 043334 815 TNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIR 892 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~ 892 (903)
| | ++ +++|.++ .|+++|+++++++ +++.+.... .+.+.+++++.++.+.|+.-.. +.+.+.+.++.+
T Consensus 281 P---D-iv---~~gK~l~-~G~Pi~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~--~~l~~~~~~~g~ 349 (443)
T PRK06058 281 P---D-LI---TTAKGIA-GGLPLSAVTGRAE-IMDAPHPGGLGGTYGGNPVACAAALAAIETIEE--DDLVARARQIEA 349 (443)
T ss_pred C---C-EE---EEccccc-CCCccEEEEEcHH-HHhhccCCCCCCCCCCCHHHHHHHHHHHHHHHH--cCHHHHHHHHHH
Confidence 2 1 22 4489998 8999999999887 888876443 3778899999999999953111 234555665555
Q ss_pred HHHHHHHH
Q 043334 893 NLESRSKR 900 (903)
Q Consensus 893 ~y~~Rr~~ 900 (903)
.++++.+.
T Consensus 350 ~l~~~L~~ 357 (443)
T PRK06058 350 LMTDRLRA 357 (443)
T ss_pred HHHHHHHH
Confidence 55555544
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=115.24 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=81.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.++++.... ..++.+..+|+.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-----------------~~~~~~~~~d~~~ 80 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-----------------GPNVEFVRGDADG 80 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-----------------CCceEEEeccccc
Confidence 357899999999999999999987 5679999999999999999883221 2478999999877
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..... ++||+|+++-.+....+ ...+++++.+.|||||.++
T Consensus 81 ~~~~~-~~~D~v~~~~~~~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 81 LPFPD-GSFDAVRSDRVLQHLED--------------------------------------PARALAEIARVLRPGGRVV 121 (241)
T ss_pred CCCCC-CCceEEEEechhhccCC--------------------------------------HHHHHHHHHHHhcCCcEEE
Confidence 64433 48999986422111100 2267899999999999998
Q ss_pred EEe
Q 043334 188 FNM 190 (903)
Q Consensus 188 ~~~ 190 (903)
+..
T Consensus 122 ~~~ 124 (241)
T PRK08317 122 VLD 124 (241)
T ss_pred EEe
Confidence 754
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-10 Score=121.77 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=87.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||||||+|.++..+++..|+.+|+++|+|+++++.|++++...+. .++++++.+|..++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~---------------~~rv~v~~~Da~~~l 130 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN---------------GERFEVIEADGAEYI 130 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC---------------CCceEEEECCHHHHH
Confidence 46799999999999999999999999999999999999999998754332 258999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+.|. |.. . .++... ....+++++.+.|+|||+++++
T Consensus 131 ~~~~~~yD~I~~D~-~~~--~--~~~~~l-----------------------------~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVHRHSTDVILVDG-FDG--E--GIIDAL-----------------------------CTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhCCCCCCEEEEeC-CCC--C--CCcccc-----------------------------CcHHHHHHHHHhcCCCcEEEEE
Confidence 54444899999762 110 0 011000 0137899999999999999997
Q ss_pred eCCC
Q 043334 190 MGGR 193 (903)
Q Consensus 190 ~~~~ 193 (903)
....
T Consensus 177 ~~~~ 180 (262)
T PRK04457 177 LWSR 180 (262)
T ss_pred cCCC
Confidence 6543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=115.91 Aligned_cols=110 Identities=22% Similarity=0.342 Sum_probs=85.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++.. +++.++.+|+.+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------------------~~~~~~~~d~~~~~ 93 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------------------ENVQFICGDAEKLP 93 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------------------CCCeEEecchhhCC
Confidence 4578999999999999999999888899999999999999987652 36889999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.....+ ....+++++.+.|+|||.+++.
T Consensus 94 ~~~-~~fD~vi~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 94 LED-SSFDLIVSNLALQWCD--------------------------------------DLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CCC-CceeEEEEhhhhhhcc--------------------------------------CHHHHHHHHHHHcCCCcEEEEE
Confidence 433 3899999752221110 0236899999999999999997
Q ss_pred eCCCCcHHH
Q 043334 190 MGGRPGQGV 198 (903)
Q Consensus 190 ~~~~~~~~~ 198 (903)
.........
T Consensus 135 ~~~~~~~~~ 143 (240)
T TIGR02072 135 TFGPGTLHE 143 (240)
T ss_pred eCCccCHHH
Confidence 655444333
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=124.20 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=100.1
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||++||+|.+++.+++. ..+|+|+|+++.|++.|++|+..|++ ++++++.+|+.+....
T Consensus 208 ~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~~~~~----------------~~v~~~~~d~~~~l~~ 269 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIAANGI----------------DNVQIIRMSAEEFTQA 269 (362)
T ss_pred CeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHHhCC----------------CcEEEEECCHHHHHHH
Confidence 57999999999999999987 46999999999999999999999987 4899999999775321
Q ss_pred C---------------CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 112 H---------------DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 112 ~---------------~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
. ..+||+|+.+||+.- +.. .+++.+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G------~~~----------------------------------~~l~~l 309 (362)
T PRK05031 270 MNGVREFNRLKGIDLKSYNFSTIFVDPPRAG------LDD----------------------------------ETLKLV 309 (362)
T ss_pred HhhcccccccccccccCCCCCEEEECCCCCC------CcH----------------------------------HHHHHH
Confidence 0 125899999999731 111 233333
Q ss_pred hhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 177 IGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 177 ~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
.+ |++++++.++.......+. .|.+ ||++.++... ..|..+..++.++.+++
T Consensus 310 ~~---~~~ivyvSC~p~tlarDl~-~L~~-gY~l~~v~~~-------DmFPqT~HvE~v~lL~r 361 (362)
T PRK05031 310 QA---YERILYISCNPETLCENLE-TLSQ-THKVERFALF-------DQFPYTHHMECGVLLEK 361 (362)
T ss_pred Hc---cCCEEEEEeCHHHHHHHHH-HHcC-CcEEEEEEEc-------ccCCCCCcEEEEEEEEe
Confidence 33 6889999888755444444 3433 8998887422 23344556666666654
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.9e-09 Score=119.55 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=140.0
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCC-----CC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMS-----ES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~-----~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
++..+.|.. +.++.+.+++.+.+..|... .| ..+..+.+++.+++..|.+. .+++++ ++.++..++.
T Consensus 83 v~~tNlg~s--~l~~~vieAv~~~~~~y~~l~~~l~~g~~g~r~~~le~~lA~l~gae~----alvv~s-g~aAi~l~l~ 155 (454)
T TIGR00474 83 VLHTNLGRA--PLAEEAIEAVTDAARGYSNLEYDLETGKRGSRYSHVEGLLCELTGAED----ALVVNN-NAAAVLLALN 155 (454)
T ss_pred EEeccCCCC--CCCHHHHHHHHHHHhcccchhccccccccchHHHHHHHHHHHHhCCCc----EEEECC-HHHHHHHHHH
Confidence 344444442 36788999999888776421 11 11224677788888878753 355555 4556776664
Q ss_pred HhccCCCeEEEcCCCcHHH------HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc--c-
Q 043334 691 CCILEGGTLCFPAGSNGNY------VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT--G- 761 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~------~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT--G- 761 (903)
+ +.+||+|++++..|..| ...++..|++++.++.+. ..+++++++++++++ +++++.+++ ||+ |
T Consensus 156 ~-l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~~----~~~l~dle~aI~~~T-~lv~~~h~s-N~~~~G~ 228 (454)
T TIGR00474 156 T-LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTTN----RTHLKDYEDAITENT-ALLLKVHTS-NYRIVGF 228 (454)
T ss_pred H-hCCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCCC----CCCHHHHHHhcCcCC-EEEEEEccC-cccccCC
Confidence 4 68999999998765332 345677899999998742 147899999999888 489999998 995 6
Q ss_pred -cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 762 -LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 762 -~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
.+.+ +++|+++|+++|+++|+|...+.+. +...+. ....+.+...... +..++++|.+|.+|.| ..|+
T Consensus 229 ~~~~d---l~~I~~la~~~g~~vivD~~sG~l~-~~~~~g-l~~~p~~~~~~~~----GaDiv~fSg~K~LgGp--~~G~ 297 (454)
T TIGR00474 229 TEEVS---IAELVALGREHGLPVMEDLGSGSLV-DLSRYG-LPDEPTVQEVIAA----GVDLVTFSGDKLLGGP--QAGI 297 (454)
T ss_pred CCCCC---HHHHHHHHHHcCCeEEEECCCcccc-cchhcc-CCCCcccccHhHc----CCCEEEecCccccCCC--eEEE
Confidence 3555 8999999999999999998643221 100000 0000111111111 3568999999998755 4899
Q ss_pred EEeCcHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSS 854 (903)
Q Consensus 841 lv~~~~~li~~l~~ 854 (903)
+++.++ +++.+.+
T Consensus 298 i~g~~~-~i~~l~~ 310 (454)
T TIGR00474 298 IVGKKE-LIERLKK 310 (454)
T ss_pred EEECHH-HHHhhhh
Confidence 999876 7776554
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-09 Score=113.43 Aligned_cols=72 Identities=29% Similarity=0.528 Sum_probs=61.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++..++. ..++++.++|+.+.
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~---------------~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDV---------------AGNVEFEVNDLLSL 116 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEECChhhC
Confidence 46789999999999999999876 67999999999999999999876654 24799999999876
Q ss_pred ccCCCCceeEEEE
Q 043334 109 CRDHDIQLERIVG 121 (903)
Q Consensus 109 ~~~~~~~fD~Iv~ 121 (903)
. ++||+|++
T Consensus 117 ~----~~fD~ii~ 125 (219)
T TIGR02021 117 C----GEFDIVVC 125 (219)
T ss_pred C----CCcCEEEE
Confidence 4 38999985
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.7e-10 Score=117.08 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=83.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|+.++.++...+ +.+|+++|+++++++.|++|++.+|+ .++++++.+|+.+.
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl---------------~~~i~~~~gda~~~ 132 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV---------------DHKINFIQSDALSA 132 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEccHHHH
Confidence 468999999999999999988765 56999999999999999999999987 36899999999876
Q ss_pred ccC-----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRD-----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~-----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
... ..++||+|+.+. +. ..|..+++.+.+.|+||
T Consensus 133 L~~l~~~~~~~~fD~VfiDa-----~k------------------------------------~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVDA-----DK------------------------------------PNYVHFHEQLLKLVKVG 171 (234)
T ss_pred HHHHHhCCCCCCCCEEEECC-----CH------------------------------------HHHHHHHHHHHHhcCCC
Confidence 431 124899998421 00 11336788999999999
Q ss_pred cEEEEE
Q 043334 184 GIMIFN 189 (903)
Q Consensus 184 G~ll~~ 189 (903)
|.++++
T Consensus 172 G~ii~d 177 (234)
T PLN02781 172 GIIAFD 177 (234)
T ss_pred eEEEEE
Confidence 999984
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=112.18 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=66.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++|+.. . ++++++++|+.++.
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~--~----------------~~v~ii~~D~~~~~ 72 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA--A----------------DNLTVIHGDALKFD 72 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc--C----------------CCEEEEECchhcCC
Confidence 5679999999999999999987 67999999999999999988732 1 47999999999886
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
... ..||.|++||||..
T Consensus 73 ~~~-~~~d~vi~n~Py~~ 89 (169)
T smart00650 73 LPK-LQPYKVVGNLPYNI 89 (169)
T ss_pred ccc-cCCCEEEECCCccc
Confidence 543 26999999999973
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-10 Score=116.36 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=89.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||.|..++.||++ |.+|+|+|+|+.+++.+... ++++.......+. +..-..+++++++|+.++.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~-~~~~~~~v~~~~~D~~~~~ 107 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEF-TRYRAGNIEIFCGDFFALT 107 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccc-eeeecCceEEEEccCCCCC
Confidence 5679999999999999999987 89999999999999986432 2221000000000 0001247999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||.|+-+--++ .++. +...++++.+.+.|||||++++.
T Consensus 108 ~~~~~~fD~i~D~~~~~------~l~~------------------------------~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 108 AADLGPVDAVYDRAALI------ALPE------------------------------EMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred cccCCCcCEEEechhhc------cCCH------------------------------HHHHHHHHHHHHHcCCCCeEEEE
Confidence 43234799987321111 1211 22337899999999999986663
Q ss_pred eCC-----------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG-----------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~-----------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ......+++.+. .+|.+..+.
T Consensus 152 ~~~~~~~~~~gpp~~~~~~eL~~~f~-~~~~i~~~~ 186 (213)
T TIGR03840 152 TLDYDQSEMAGPPFSVSPAEVEALYG-GHYEIELLE 186 (213)
T ss_pred EEEcCCCCCCCcCCCCCHHHHHHHhc-CCceEEEEe
Confidence 211 124455555554 246666553
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=117.53 Aligned_cols=193 Identities=17% Similarity=0.324 Sum_probs=109.5
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKW-------LPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~-------~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
.|+|+.....+.+.+. ..++.+|+|.+||+|.+.+++.+.. ...+++|+|+++.++.+|+.|+..++.
T Consensus 28 ~~TP~~i~~l~~~~~~-----~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~ 102 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLN-----PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI 102 (311)
T ss_dssp C---HHHHHHHHHHHT-----T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred eehHHHHHHHHHhhhh-----ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence 5788755554445442 2256789999999999999988743 678999999999999999999988776
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
+ ..+..+..+|.+...... ..+||+|++||||....-... .... ...+..
T Consensus 103 ~--------------~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~---~~~~------------~~~~~~ 153 (311)
T PF02384_consen 103 D--------------NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDE---ELEK------------DERFKK 153 (311)
T ss_dssp H--------------CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STG---GGCT------------TCCCTT
T ss_pred c--------------cccccccccccccccccccccccccccCCCCccccccccc---cccc------------cccccc
Confidence 2 123568889987664433 348999999999996511000 0000 000111
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCC-----CcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcc
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR-----PGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDIS 233 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~-----~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~ 233 (903)
........+. .|+..+.+.|++||++.+.++.. .....+++.+-+.++ +..++. .....|.. +.+.
T Consensus 154 ~~~~~~~~~~--~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~-i~aVI~-----Lp~~~F~~-t~v~ 224 (311)
T PF02384_consen 154 YFPPKSNAEY--AFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYLLENGY-IEAVIS-----LPSNLFKP-TGVP 224 (311)
T ss_dssp CSSSTTEHHH--HHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHHHHHEE-EEEEEE-------TTSSSS-SSS-
T ss_pred cCCCccchhh--hhHHHHHhhcccccceeEEecchhhhccchHHHHHHHHHhhch-hhEEee-----cccceecc-cCcC
Confidence 0111122221 48899999999999988866531 123344555544432 222211 22344444 5555
Q ss_pred -eeeeeeccC
Q 043334 234 -ALVEIEKNS 242 (903)
Q Consensus 234 -~l~~~e~~~ 242 (903)
.++.++++.
T Consensus 225 t~ilil~k~~ 234 (311)
T PF02384_consen 225 TSILILNKKK 234 (311)
T ss_dssp EEEEEEEESS
T ss_pred ceEEEEeecc
Confidence 466677765
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=114.13 Aligned_cols=130 Identities=19% Similarity=0.326 Sum_probs=95.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+++|+|+++.+++.++++....+. ++++..+|+.+.
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~-----------------~~~~~~~~~~~~ 107 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL-----------------KIDYRQTTAEEL 107 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC-----------------ceEEEecCHHHh
Confidence 36789999999999999998876 57899999999999999998866553 578888888776
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|+++-.+...+ ....+++.+.+.|+|||.+++
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~--------------------------------------~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVP--------------------------------------DPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred hhhcCCCccEEEEhhHhhccC--------------------------------------CHHHHHHHHHHHcCCCcEEEE
Confidence 533334899998632111100 012678999999999999998
Q ss_pred EeCCC-----------------------------CcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGR-----------------------------PGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~-----------------------------~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
..... .....+.+++++.||..+....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~ 205 (233)
T PRK05134 150 STLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDITG 205 (233)
T ss_pred EecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeeee
Confidence 54321 1233466788888888877643
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-11 Score=109.03 Aligned_cols=99 Identities=23% Similarity=0.372 Sum_probs=60.7
Q ss_pred EEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCC
Q 043334 35 AELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDI 114 (903)
Q Consensus 35 LDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~ 114 (903)
||+|||+|.++..+++.++..+++|+|+|+.|++.|++++...... ....+++...|..+.... +
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~--~ 65 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-------------NFERLRFDVLDLFDYDPP--E 65 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----------------EEEEE--SSS---CCC----
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-------------ceeEEEeecCChhhcccc--c
Confidence 7999999999999999988899999999999999998888766531 001233444443333222 3
Q ss_pred ceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 115 QLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 115 ~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+||+|+++-.... + +....+++.++++|||||++
T Consensus 66 ~fD~V~~~~vl~~------l--------------------------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 66 SFDLVVASNVLHH------L--------------------------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --SEEEEE-TTS----------------------------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred ccceehhhhhHhh------h--------------------------------hhHHHHHHHHHHHcCCCCCC
Confidence 8999986422221 1 11347899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=109.96 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+ .. ++++++++|+.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~----------------~~i~~~~~d~~ 82 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI----------------ENVDFIRGDFT 82 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC----------------CCceEEEeeCC
Confidence 4578999999999999999998876 45689999999864 11 35778888886
Q ss_pred cccc-------CCCCceeEEEECC--CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 107 AYCR-------DHDIQLERIVGCI--PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 107 ~~~~-------~~~~~fD~Iv~Np--Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
+... ...++||+|++|+ ++.......... ..+....+++.+.
T Consensus 83 ~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~-----------------------------~~~~~~~~l~~~~ 133 (188)
T TIGR00438 83 DEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLR-----------------------------SIDLVELALDIAK 133 (188)
T ss_pred ChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHH-----------------------------HHHHHHHHHHHHH
Confidence 5420 1123799999874 222111111100 0112347899999
Q ss_pred hcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 178 GVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 178 ~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
++|+|||++++..........+...+++ +|....+.++.
T Consensus 134 ~~LkpgG~lvi~~~~~~~~~~~l~~l~~-~~~~~~~~~~~ 172 (188)
T TIGR00438 134 EVLKPKGNFVVKVFQGEEIDEYLNELRK-LFEKVKVTKPQ 172 (188)
T ss_pred HHccCCCEEEEEEccCccHHHHHHHHHh-hhceEEEeCCC
Confidence 9999999999976554444343344444 47666664443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.7e-10 Score=119.90 Aligned_cols=103 Identities=27% Similarity=0.374 Sum_probs=79.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP---SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~---~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.+.+|||+|||+|.++..+++..+. .+|+|+|+|+.|++.|+++. +++.+.++|+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---------------------~~~~~~~~d~~ 143 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---------------------PQVTFCVASSH 143 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---------------------CCCeEEEeecc
Confidence 4568999999999999999887653 47999999999999998663 36889999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+++... ++||+|+++ ..+ ..++++.++|||||.+
T Consensus 144 ~lp~~~-~sfD~I~~~----~~~-----------------------------------------~~~~e~~rvLkpgG~l 177 (272)
T PRK11088 144 RLPFAD-QSLDAIIRI----YAP-----------------------------------------CKAEELARVVKPGGIV 177 (272)
T ss_pred cCCCcC-CceeEEEEe----cCC-----------------------------------------CCHHHHHhhccCCCEE
Confidence 875443 489999853 100 2256788999999999
Q ss_pred EEEeCCCCcHHHH
Q 043334 187 IFNMGGRPGQGVC 199 (903)
Q Consensus 187 l~~~~~~~~~~~l 199 (903)
++..+.......+
T Consensus 178 i~~~p~~~~l~el 190 (272)
T PRK11088 178 ITVTPGPRHLFEL 190 (272)
T ss_pred EEEeCCCcchHHH
Confidence 9987665444333
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.6e-10 Score=109.20 Aligned_cols=117 Identities=24% Similarity=0.329 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+++|+|+++.+++. . ++.....+....
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~------~--------------------~~~~~~~~~~~~ 72 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK------R--------------------NVVFDNFDAQDP 72 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH------T--------------------TSEEEEEECHTH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh------h--------------------hhhhhhhhhhhh
Confidence 46789999999999999999776 5699999999999988 1 112222222222
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|+++--.. ++. ....+++++.++|||||.+++
T Consensus 73 ~~~-~~~fD~i~~~~~l~------~~~--------------------------------d~~~~l~~l~~~LkpgG~l~~ 113 (161)
T PF13489_consen 73 PFP-DGSFDLIICNDVLE------HLP--------------------------------DPEEFLKELSRLLKPGGYLVI 113 (161)
T ss_dssp HCH-SSSEEEEEEESSGG------GSS--------------------------------HHHHHHHHHHHCEEEEEEEEE
T ss_pred hcc-ccchhhHhhHHHHh------hcc--------------------------------cHHHHHHHHHHhcCCCCEEEE
Confidence 222 23899999741111 111 133789999999999999999
Q ss_pred EeCCCC-----------------------cHHHHHHHHHHCCCeEEE
Q 043334 189 NMGGRP-----------------------GQGVCKRLFERRGFRVDK 212 (903)
Q Consensus 189 ~~~~~~-----------------------~~~~l~~ll~~~gf~~~~ 212 (903)
...... ....++++++++||++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 114 SDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp EEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred EEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 655421 334556677777777654
|
... |
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-10 Score=109.67 Aligned_cols=93 Identities=11% Similarity=0.180 Sum_probs=77.1
Q ss_pred CCCCeEEccCCCCC-----------------CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcC--CCCCCCC
Q 043334 613 PNSGLIHMDVDQSF-----------------LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFG--FPIDINA 673 (903)
Q Consensus 613 ~~~~~IdLs~g~p~-----------------~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G--~~~~pe~ 673 (903)
.+.++|+|++.+|. +.+|+.+++++.+ +..|....|.+++|+++++|+.+++| ++.+|+
T Consensus 41 np~G~I~lg~aEN~l~~dli~~~i~~~p~~d~~~~~~i~~~~~~-~a~Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd- 118 (153)
T PLN02994 41 NPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKD-IALFQDYHGLANFRKAIANFMAEARGGRVKFDAD- 118 (153)
T ss_pred CCCceEeeehhhhHhHHHHHHHHHhCCCccccCCcHHHHHHHHH-HhcCCCCCCcHHHHHHHHHHHHHHhCCCCccchh-
Confidence 45568888888763 3344554555555 34588888999999999999999988 677887
Q ss_pred cEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 674 EFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 674 ~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
+|++|+|+++++..++.++++|||.|++++|+|+
T Consensus 119 ~Ivvt~Ga~~al~~l~~~l~dpGD~VlVp~P~Y~ 152 (153)
T PLN02994 119 MIVLSAGATAANEIIMFCIADPGDAFLVPTPYYA 152 (153)
T ss_pred heEEcCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 9999999999999999999999999999999996
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=112.97 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++.. .+|+++|+++++++.|++|+..+++ .++++.++|..+..
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 139 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGL----------------HNVSVRHGDGWKGW 139 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCC----------------CceEEEECCcccCC
Confidence 56899999999999999888774 4899999999999999999988776 46999999987654
Q ss_pred cCCCCceeEEEEC
Q 043334 110 RDHDIQLERIVGC 122 (903)
Q Consensus 110 ~~~~~~fD~Iv~N 122 (903)
... ++||+|+++
T Consensus 140 ~~~-~~fD~I~~~ 151 (212)
T PRK00312 140 PAY-APFDRILVT 151 (212)
T ss_pred CcC-CCcCEEEEc
Confidence 332 489999864
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=112.56 Aligned_cols=126 Identities=21% Similarity=0.231 Sum_probs=104.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|+|.|+|||.++..|+...++ .+|+.+|+.++..+.|++|+...++ .+++++..+|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l---------------~d~v~~~~~Dv~ 156 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL---------------GDRVTLKLGDVR 156 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc---------------ccceEEEecccc
Confidence 457899999999999999999986644 7999999999999999999998877 356999999999
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+..... .||+|+.. .+++ | ++++.+.+.|||||.+
T Consensus 157 ~~~~~~--~vDav~LD-----mp~P-----------W---------------------------~~le~~~~~Lkpgg~~ 191 (256)
T COG2519 157 EGIDEE--DVDAVFLD-----LPDP-----------W---------------------------NVLEHVSDALKPGGVV 191 (256)
T ss_pred cccccc--ccCEEEEc-----CCCh-----------H---------------------------HHHHHHHHHhCCCcEE
Confidence 987665 89999832 1110 0 6799999999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
++..+.........+.+++.||...+.
T Consensus 192 ~~y~P~veQv~kt~~~l~~~g~~~ie~ 218 (256)
T COG2519 192 VVYSPTVEQVEKTVEALRERGFVDIEA 218 (256)
T ss_pred EEEcCCHHHHHHHHHHHHhcCccchhh
Confidence 998887766666667788889876655
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.2e-09 Score=110.49 Aligned_cols=106 Identities=17% Similarity=0.284 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
..+.+|||+|||+|.++..+++. +.+++|+|+++.+++.+++++..++. .++.+..+|+.+.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~----------------~~~~~~~~d~~~~ 105 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPL----------------LKIEYRCTSVEDL 105 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEEeCCHHHh
Confidence 35789999999999999998875 46799999999999999999876654 2588999998877
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|+++-..... .....+++++.+.|+|||.+++
T Consensus 106 ~~~~~~~~D~i~~~~~l~~~--------------------------------------~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 106 AEKGAKSFDVVTCMEVLEHV--------------------------------------PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred hcCCCCCccEEEehhHHHhC--------------------------------------CCHHHHHHHHHHhcCCCcEEEE
Confidence 54433489999853111100 0023678999999999999887
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 148 ~~ 149 (224)
T TIGR01983 148 ST 149 (224)
T ss_pred Ee
Confidence 54
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=116.45 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=81.7
Q ss_pred CCCeEEEeCCccCHH-HH-HHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 30 KDKTVAELGCGNGWI-TI-AIAEKWLPSKVYGLDINPRAIRISWINLYL-NALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 30 ~~~~VLDlGCGtG~l-si-~la~~~~~~~V~giDis~~al~~A~~n~~~-~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.+++|+|+|||.|-+ ++ .++..+|+.+++|+|+|+++++.|++++.. .++ .++++|..+|+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL---------------~~rV~F~~~Da~ 187 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL---------------SKRMFFHTADVM 187 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc---------------cCCcEEEECchh
Confidence 568999999998844 33 334567888999999999999999999854 555 368999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+.... .++||+|++. -.+ ++.+ +...++++.+.+.|+|||.+
T Consensus 188 ~~~~~-l~~FDlVF~~-ALi------~~dk------------------------------~~k~~vL~~l~~~LkPGG~L 229 (296)
T PLN03075 188 DVTES-LKEYDVVFLA-ALV------GMDK------------------------------EEKVKVIEHLGKHMAPGALL 229 (296)
T ss_pred hcccc-cCCcCEEEEe-ccc------cccc------------------------------ccHHHHHHHHHHhcCCCcEE
Confidence 86433 2389999853 111 1110 11337899999999999999
Q ss_pred EEEeC
Q 043334 187 IFNMG 191 (903)
Q Consensus 187 l~~~~ 191 (903)
++...
T Consensus 230 vlr~~ 234 (296)
T PLN03075 230 MLRSA 234 (296)
T ss_pred EEecc
Confidence 99764
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=114.31 Aligned_cols=246 Identities=14% Similarity=0.103 Sum_probs=152.5
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC-C-C-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS-E-S-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~-~-G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..| ...++ ..|.+.+++.+.+.+.... . + ..+.+..+++.+.+......+ .++++++++++
T Consensus 38 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~---~v~f~~sGseA 114 (423)
T PRK05964 38 LADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLD---HVFFSDSGSVA 114 (423)
T ss_pred eCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCCcHHH
Confidence 3467788999766 34444 4678889988887763321 1 1 345567788888776432223 79999999998
Q ss_pred HHHHHHHhcc-------CC-CeEEEcCCCcHHHHHHHHH-cCC------------EEEEecCCCCCCcccCHHHHHHHhh
Q 043334 685 FNKLVLCCIL-------EG-GTLCFPAGSNGNYVSAARF-LKA------------NIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 685 l~~ll~~l~~-------pG-D~Vlv~~P~y~~~~~~~~~-~G~------------~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
...++..... +| .+|+...-+|.+....+.. .+- .+..++....+....+.+.+++.+.
T Consensus 115 ~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~ 194 (423)
T PRK05964 115 VEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLE 194 (423)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHH
Confidence 8887765421 23 4687777777654332221 111 1122222111100112677887775
Q ss_pred cCC-CcEEEEECCC-CCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc
Q 043334 744 TVK-KPWVYISGPT-INPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820 (903)
Q Consensus 744 ~~~-~~~vil~~P~-~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~ 820 (903)
... ..+.++.-|. |+..|... +.+.+++|.++|++||+++|.||++.++-..|... . .....-.+
T Consensus 195 ~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~---a----~~~~~v~p----- 262 (423)
T PRK05964 195 KHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLF---A----CEQAGVSP----- 262 (423)
T ss_pred hCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchh---H----HHhcCCCC-----
Confidence 321 2345566774 67788766 89999999999999999999999997664444221 0 11111111
Q ss_pred eEEEccCchhcccccceeeEEEeCcHHHHHHHHhC-------C-CCCCCcHHHHHHHHHHHh
Q 043334 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF-------P-GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 821 vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~-------~-~~~~~s~~~Q~aa~~~L~ 874 (903)
-+-++||.++..++++|+++++++ +.+.+... . .+.+.+.+.-.++.+.|+
T Consensus 263 --Di~~~~K~l~gG~~p~~av~~~~~-i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~ 321 (423)
T PRK05964 263 --DIMCLSKGLTGGYLPLAATLCTAE-IFEAFYSDDRAKAFMHSPSYTANPLACAAANASLD 321 (423)
T ss_pred --CeeeeehhhhcCcccceEEEEcHH-HHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHH
Confidence 134789999754489999988877 88887532 1 134567777777777774
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.3e-09 Score=108.42 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=80.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++.++. .+++|+|+++.+++.++++.. . ..++.++.+|+.+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~---------------~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L---------------PLNIEFIQADAEAL 100 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c---------------CCCceEEecchhcC
Confidence 5789999999999999999998765 699999999999999998874 1 24789999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++-..... .....+++.+.+.|+|||.+++
T Consensus 101 ~~~~-~~~D~i~~~~~~~~~--------------------------------------~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 101 PFED-NSFDAVTIAFGLRNV--------------------------------------TDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred CCCC-CcEEEEEEeeeeCCc--------------------------------------ccHHHHHHHHHHHcCCCcEEEE
Confidence 5433 489999864211100 0023679999999999999987
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 142 ~ 142 (223)
T TIGR01934 142 L 142 (223)
T ss_pred E
Confidence 3
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.5e-08 Score=112.86 Aligned_cols=271 Identities=10% Similarity=0.025 Sum_probs=158.9
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC--CC-CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM--SE-SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~--~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ .++.+.+++.+.+..... .. -..+.+..+++.+.+...........++++++++++
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA 114 (442)
T TIGR00709 35 DVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADA 114 (442)
T ss_pred eCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHH
Confidence 35677899997664 3333 577888998888765321 11 123556778888877653211112135666777887
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHHHHHH-cC------------CEEEEecCCCC--CCccc----CH----HHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVSAARF-LK------------ANIVNIPTESE--VGFKM----TE----KTLV 739 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~~~~-~G------------~~vv~v~~~~~--~~f~l----d~----~~L~ 739 (903)
...++..... .| ..|+...-+|-+....+.. .| ..+..++.... ..|+. +. +.++
T Consensus 115 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (442)
T TIGR00709 115 VEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFE 194 (442)
T ss_pred HHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHH
Confidence 7776654321 23 4677777777665433322 22 01222222110 00110 11 2233
Q ss_pred HHhhc-----CCCcEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 740 TILET-----VKKPWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 740 ~~l~~-----~~~~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
+.+.. ... +.++.-|- .|+...+.+.+.+++|.++|++||+++|.||++.++-..|..+ . ...++-
T Consensus 195 ~~~~~~~~~~~~i-aavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~---a----~~~~gv 266 (442)
T TIGR00709 195 NFIEDVESGVDKP-AAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMF---A----FEHAGI 266 (442)
T ss_pred HHHHhhccCCCce-EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchh---H----HHHcCC
Confidence 33321 222 34444455 4554556899999999999999999999999998876655432 1 122222
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh-CC-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS-FP-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHI 891 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~-~~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r 891 (903)
.| .|++ +||.++. |+++|+++++++ + +.+.. .. .+.+.++.++.++.+.|+.-.. +.+.++.+++.
T Consensus 267 ~P-----Div~--~gK~l~~-G~Pigav~~~~~-~-~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g 334 (442)
T TIGR00709 267 EP-----DFVV--MSKAVGG-GLPLAVLLIAPE-F-DAWQPAGHTGTFRGNQLAMVTGTEALNYWKD--DNLAQNAQERG 334 (442)
T ss_pred CC-----cEEE--EcccccC-CcccEEEEEchH-H-hccCCCcCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHH
Confidence 22 2333 8999986 999999999876 4 44432 12 3777889999999999953111 24556666666
Q ss_pred HHHHHHHHHH
Q 043334 892 RNLESRSKRL 901 (903)
Q Consensus 892 ~~y~~Rr~~l 901 (903)
+.++++.+.+
T Consensus 335 ~~l~~~L~~l 344 (442)
T TIGR00709 335 ERITSFLDDM 344 (442)
T ss_pred HHHHHHHHHH
Confidence 6666665544
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=125.82 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=99.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..+..+++. +. .+|+++|+|+++++.+++|.....+.. ..-..++++++.+|..++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~---------~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG---------GALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc---------cccCCCceEEEEChHHHH
Confidence 5689999999999999998874 44 799999999999999998643222100 000125899999999987
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|+|....+....+ . ...+++.+.+.|||||.+++
T Consensus 367 l~~~~~~fDvIi~D~~~~~~~~~~~L---~------------------------------t~ef~~~~~~~L~pgG~lv~ 413 (521)
T PRK03612 367 LRKLAEKFDVIIVDLPDPSNPALGKL---Y------------------------------SVEFYRLLKRRLAPDGLLVV 413 (521)
T ss_pred HHhCCCCCCEEEEeCCCCCCcchhcc---c------------------------------hHHHHHHHHHhcCCCeEEEE
Confidence 65444589999999775432211100 0 12678999999999999999
Q ss_pred EeCCCCc-H---HHHHHHHHHCCCeEEEEEeh
Q 043334 189 NMGGRPG-Q---GVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 189 ~~~~~~~-~---~~l~~ll~~~gf~~~~~~~~ 216 (903)
...+... . ..+.+.+++.|| .+..+..
T Consensus 414 ~~~~~~~~~~~~~~i~~~l~~~gf-~v~~~~~ 444 (521)
T PRK03612 414 QSTSPYFAPKAFWSIEATLEAAGL-ATTPYHV 444 (521)
T ss_pred ecCCcccchHHHHHHHHHHHHcCC-EEEEEEe
Confidence 7653321 1 234567888899 4444333
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=112.65 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=59.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++..++.+++|+|+|++|++.|+++. +++.+.++|+.+..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---------------------~~~~~~~~d~~~~~ 101 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---------------------PNINIIQGSLFDPF 101 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---------------------CCCcEEEeeccCCC
Confidence 577999999999999999998877889999999999999998764 25678899988732
Q ss_pred cCCCCceeEEEEC
Q 043334 110 RDHDIQLERIVGC 122 (903)
Q Consensus 110 ~~~~~~fD~Iv~N 122 (903)
. .++||+|++|
T Consensus 102 -~-~~sfD~V~~~ 112 (204)
T TIGR03587 102 -K-DNFFDLVLTK 112 (204)
T ss_pred -C-CCCEEEEEEC
Confidence 2 3489999965
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-08 Score=111.89 Aligned_cols=273 Identities=11% Similarity=0.100 Sum_probs=157.8
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCC---CchHHHHHHHHHHHhhcCCCCCCCCcEEe-cCchHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSE---SEIDVTPSIQQYIKSNFGFPIDINAEFIY-ADCSQS 683 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~---G~~~lr~ala~~l~~~~G~~~~pe~~I~v-t~Gs~~ 683 (903)
...|...||+..|. ..++ .++.+.+++.+.+.+..... ...+.+..+++.+.+....+......+++ ++++++
T Consensus 31 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse 110 (412)
T TIGR02407 31 DEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTN 110 (412)
T ss_pred eCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchH
Confidence 35678899986553 3344 57888999988876432211 12455666777776643111111113544 567777
Q ss_pred HHHHHHHHhcc-CC-CeEEEcCCCcHHHHHHH-HHcCC------------EEEEecCCCCCCc-ccCHHHHHHHhhcC--
Q 043334 684 LFNKLVLCCIL-EG-GTLCFPAGSNGNYVSAA-RFLKA------------NIVNIPTESEVGF-KMTEKTLVTILETV-- 745 (903)
Q Consensus 684 al~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~~-~~~G~------------~vv~v~~~~~~~f-~ld~~~L~~~l~~~-- 745 (903)
+...++..... .| .+|+....+|-+....+ ...|. .++.+|....... .-+++.+++.+...
T Consensus 111 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~ 190 (412)
T TIGR02407 111 AVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSS 190 (412)
T ss_pred HHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccC
Confidence 77766654321 23 56777777665543322 22221 2222332110000 01356677777532
Q ss_pred --CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 746 --KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 746 --~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
...+.++.-|-|++.|. +.+.+.+++|.++|+++|+++|+||++.++--.|.. +. .....-.| |
T Consensus 191 ~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~---~a----~~~~~v~P---D--- 257 (412)
T TIGR02407 191 GVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTF---FS----FEPAGIEP---D--- 257 (412)
T ss_pred CCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchh---HH----hcccCCCC---C---
Confidence 11255566677899998 679999999999999999999999999764222221 11 01111122 2
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGL-RERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~-~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+.+|||.++..|+|+|+++++++ + +.+.... .+.+.+.+.-.++.+.|+. -. .+.+.++++++.+.++++.+
T Consensus 258 -i~~~~K~lg~~G~pigav~~~~~-~-~~~~~~~~~~T~~gnpl~~aaa~a~l~~~i~--~~~l~~~~~~~g~~l~~~l~ 332 (412)
T TIGR02407 258 -IVCLSKSISGYGLPLALTLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEYYWS--DDAFEKAVQRKSEIIQERLD 332 (412)
T ss_pred -EEEechhccCCccceeEEEEchh-h-hccCCCccCCCCCccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHH
Confidence 33589999733999999999876 5 5543221 2555566655555555531 11 13466778888888888776
Q ss_pred HH
Q 043334 900 RL 901 (903)
Q Consensus 900 ~l 901 (903)
.+
T Consensus 333 ~l 334 (412)
T TIGR02407 333 RI 334 (412)
T ss_pred HH
Confidence 54
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-09 Score=108.63 Aligned_cols=83 Identities=12% Similarity=0.006 Sum_probs=68.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||++||+|.+++.++.+ +..+|+++|+++.+++.+++|+..++++ ++++++++|..+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~~~~~~~---------------~~~~~~~~D~~~~ 111 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENLALLKSG---------------EQAEVVRNSALRA 111 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHhCCc---------------ccEEEEehhHHHH
Confidence 35789999999999999998887 3459999999999999999999998872 4799999999765
Q ss_pred ccC---CCCceeEEEECCCCCC
Q 043334 109 CRD---HDIQLERIVGCIPQIL 127 (903)
Q Consensus 109 ~~~---~~~~fD~Iv~NpPy~~ 127 (903)
... ....||+|+.+|||..
T Consensus 112 l~~~~~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 112 LKFLAKKPTFDNVIYLDPPFFN 133 (189)
T ss_pred HHHhhccCCCceEEEECcCCCC
Confidence 321 1124899999999973
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=113.22 Aligned_cols=82 Identities=11% Similarity=0.199 Sum_probs=62.3
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.|...+.+.+..... ++.+|||+|||||.++..+++.. +.+|+|+|+|++|++.|+++.
T Consensus 36 ~wr~~~~~~l~~~~~---~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~----------------- 94 (226)
T PRK05785 36 RWRAELVKTILKYCG---RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD----------------- 94 (226)
T ss_pred HHHHHHHHHHHHhcC---CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------------
Confidence 465555555544322 36799999999999999999876 579999999999999997531
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEEC
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGC 122 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~N 122 (903)
.++++|+.+++..+ ++||+|+++
T Consensus 95 -------~~~~~d~~~lp~~d-~sfD~v~~~ 117 (226)
T PRK05785 95 -------DKVVGSFEALPFRD-KSFDVVMSS 117 (226)
T ss_pred -------ceEEechhhCCCCC-CCEEEEEec
Confidence 24678888876544 489999975
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=115.51 Aligned_cols=140 Identities=17% Similarity=0.153 Sum_probs=96.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++||++|||+|..+..+++..+..+|+++|+|+++++.|++++...+.. ..-.++++++.+|...+.
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~-----------~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGG-----------AYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccc-----------cccCCceEEEECchHHHH
Confidence 468999999999999999887645579999999999999999987543210 001368999999998876
Q ss_pred cCCCCceeEEEECC--CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RDHDIQLERIVGCI--PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~~~~fD~Iv~Np--Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
....++||+|+++. |+.. ... . ....+++.+.+.|+|||+++
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~--~~~----l------------------------------~t~ef~~~~~~~L~~gGvlv 188 (283)
T PRK00811 145 AETENSFDVIIVDSTDPVGP--AEG----L------------------------------FTKEFYENCKRALKEDGIFV 188 (283)
T ss_pred hhCCCcccEEEECCCCCCCc--hhh----h------------------------------hHHHHHHHHHHhcCCCcEEE
Confidence 54445899999863 3311 000 0 01367899999999999999
Q ss_pred EEeCCCC-cHHHHHH---HHHHCCCeEEEEEehh
Q 043334 188 FNMGGRP-GQGVCKR---LFERRGFRVDKLWQTK 217 (903)
Q Consensus 188 ~~~~~~~-~~~~l~~---ll~~~gf~~~~~~~~~ 217 (903)
+..+... ....+.. .+++. |..+..+...
T Consensus 189 ~~~~~~~~~~~~~~~i~~tl~~~-F~~v~~~~~~ 221 (283)
T PRK00811 189 AQSGSPFYQADEIKDMHRKLKEV-FPIVRPYQAA 221 (283)
T ss_pred EeCCCcccCHHHHHHHHHHHHHH-CCCEEEEEeE
Confidence 9765432 2223232 33333 6666665444
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.7e-09 Score=116.39 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=96.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||++|||+|..+..+.+..+..+|+++|+|+++++.|++......+. .+....++++++.+|..++.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~---------~~~~~DpRV~vvi~Da~~fL 220 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLN---------KSAFFDNRVNVHVCDAKEFL 220 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhc---------cccCCCCceEEEECcHHHHH
Confidence 467999999999998888877544579999999999999999632111000 00011368999999999976
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+.++|.-.... .... .-..+++.+.+.|+|||++++.
T Consensus 221 ~~~~~~YDVIIvDl~DP~~~~---~~~L------------------------------yT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 221 SSPSSLYDVIIIDFPDPATEL---LSTL------------------------------YTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HhcCCCccEEEEcCCCccccc---hhhh------------------------------hHHHHHHHHHHhcCCCcEEEEe
Confidence 555558999998755321110 0000 0137899999999999999987
Q ss_pred eCCCCcH----HHHHHHHHHCCCeEEEE
Q 043334 190 MGGRPGQ----GVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~~~~----~~l~~ll~~~gf~~~~~ 213 (903)
.++.... ..+.+.+++.++.....
T Consensus 268 s~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 268 SNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 6544322 22356778887766544
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.9e-09 Score=115.55 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=92.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+.|-||.++++++. .+..+|+++|.|..+++.|++|+..|+++ .++++++++|++++.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~--------------~~~~~~~~~Dvf~~l 187 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLD--------------LDRHRFIQGDVFKFL 187 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-C--------------CTCEEEEES-HHHHH
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--------------ccceEEEecCHHHHH
Confidence 578999999999999999665 44568999999999999999999999984 257999999998864
Q ss_pred cC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.. ..++||+||.+||-+...... +. ..|.+++..+.++|+|||.++
T Consensus 188 ~~~~~~~~fD~IIlDPPsF~k~~~~-~~-------------------------------~~y~~L~~~a~~ll~~gG~l~ 235 (286)
T PF10672_consen 188 KRLKKGGRFDLIILDPPSFAKSKFD-LE-------------------------------RDYKKLLRRAMKLLKPGGLLL 235 (286)
T ss_dssp HHHHHTT-EEEEEE--SSEESSTCE-HH-------------------------------HHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHhcCCCCCEEEECCCCCCCCHHH-HH-------------------------------HHHHHHHHHHHHhcCCCCEEE
Confidence 31 234899999999987533211 10 125588999999999999988
Q ss_pred EEeCC-CCcHHHHHHHHHHCC
Q 043334 188 FNMGG-RPGQGVCKRLFERRG 207 (903)
Q Consensus 188 ~~~~~-~~~~~~l~~ll~~~g 207 (903)
+...+ ....+.+.+.+.+.+
T Consensus 236 ~~scs~~i~~~~l~~~~~~~a 256 (286)
T PF10672_consen 236 TCSCSHHISPDFLLEAVAEAA 256 (286)
T ss_dssp EEE--TTS-HHHHHHHHHHHH
T ss_pred EEcCCcccCHHHHHHHHHHhC
Confidence 75543 444455555555543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.9e-08 Score=107.45 Aligned_cols=197 Identities=14% Similarity=0.167 Sum_probs=144.6
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
+.++.++.++....-. +.+.-...+.+.+.+.++..++.+-. + -++++.+++.++...+..+++|||+|++...+..
T Consensus 15 ~v~~~V~~am~~~~~~-h~s~~F~~~~~~~~~~L~~v~~t~~~-~-~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~F 91 (383)
T COG0075 15 PVPPRVLLAMARPMVG-HRSPDFVGIMKEVLEKLRKVFGTENG-D-VVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKF 91 (383)
T ss_pred CCCHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHhcCCCC-c-EEEEcCCcHHHHHHHHHhccCCCCeEEEEeCChH
Confidence 4677787776554211 12223344556667777777777621 2 5777788899999999999999999999988776
Q ss_pred H--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 708 N--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 708 ~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
+ +..+++.+|++++.+..... =.+|++++++++++. ..++|.+++-- -+||...+ +++|.++|++||.++|
T Consensus 92 G~R~~~ia~~~g~~v~~~~~~wg--~~v~p~~v~~~L~~~~~~~~V~~vH~E-TSTGvlnp---l~~I~~~~k~~g~l~i 165 (383)
T COG0075 92 GERFAEIAERYGAEVVVLEVEWG--EAVDPEEVEEALDKDPDIKAVAVVHNE-TSTGVLNP---LKEIAKAAKEHGALLI 165 (383)
T ss_pred HHHHHHHHHHhCCceEEEeCCCC--CCCCHHHHHHHHhcCCCccEEEEEecc-CcccccCc---HHHHHHHHHHcCCEEE
Confidence 6 67789999999999988643 348999999999843 34477777666 79999987 8999999999999999
Q ss_pred EecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc-ccceeeEEEeCcHHHHHHHH
Q 043334 785 IDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT-GALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 785 ~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~-~GlRiG~lv~~~~~li~~l~ 853 (903)
+|-+= .+++... .+++ .+-.+++.+-=|.++. || +|++..+++ ..+++.
T Consensus 166 VDaVs---S~Gg~~~----------~vd~----wgiDv~itgSQK~l~~PPG--la~v~~S~~-a~e~~~ 215 (383)
T COG0075 166 VDAVS---SLGGEPL----------KVDE----WGIDVAITGSQKALGAPPG--LAFVAVSER-ALEAIE 215 (383)
T ss_pred EEecc---cCCCccc----------chhh----cCccEEEecCchhccCCCc--cceeEECHH-HHHHHh
Confidence 99875 3455442 1122 2467888888999965 67 588888876 555554
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=105.44 Aligned_cols=136 Identities=20% Similarity=0.270 Sum_probs=93.4
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||+|||+|.+...|++..-..+.+|+|.|+.++++|+..++.++++ +.|+|.+.|+.++...
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~---------------n~I~f~q~DI~~~~~~ 133 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFS---------------NEIRFQQLDITDPDFL 133 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCC---------------cceeEEEeeccCCccc
Confidence 3999999999999999999855557999999999999999888777763 5599999999987333
Q ss_pred CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeC
Q 043334 112 HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMG 191 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~ 191 (903)
.++||+|.- ......+. |++. ...+. +...+..+.+.|+|||+|++...
T Consensus 134 -~~qfdlvlD------KGT~DAis--------------Ls~d--------~~~~r--~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 134 -SGQFDLVLD------KGTLDAIS--------------LSPD--------GPVGR--LVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred -ccceeEEee------cCceeeee--------------cCCC--------Ccccc--eeeehhhHhhccCCCcEEEEEec
Confidence 347888851 11111100 0000 00000 01336667788999999988654
Q ss_pred CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 192 GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 192 ~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ..++.+.++..||......
T Consensus 183 N~T-~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 183 NFT-KDELVEEFENFNFEYLSTV 204 (227)
T ss_pred Ccc-HHHHHHHHhcCCeEEEEee
Confidence 443 4445678888888876653
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-09 Score=117.63 Aligned_cols=139 Identities=16% Similarity=0.222 Sum_probs=99.3
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||+|||+|.+++.+++.. .+|+|+|++++|++.|++|+..|++ ++++++++|+.++...
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~----------------~~v~~~~~d~~~~~~~ 260 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNI----------------DNVQIIRMSAEEFTQA 260 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEEcCHHHHHHH
Confidence 479999999999999999874 5999999999999999999999987 4799999999876432
Q ss_pred ----------C-----CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 112 ----------H-----DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 112 ----------~-----~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
. ...||+|+.+||..- +.. .+++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G------~~~----------------------------------~~l~~l 300 (353)
T TIGR02143 261 MNGVREFRRLKGIDLKSYNCSTIFVDPPRAG------LDP----------------------------------DTCKLV 300 (353)
T ss_pred HhhccccccccccccccCCCCEEEECCCCCC------CcH----------------------------------HHHHHH
Confidence 0 114899999999431 110 233333
Q ss_pred hhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 177 IGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 177 ~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
. +|++++++.++.......+.. |. .||++.++... ..|..+..++.++.+++
T Consensus 301 ~---~~~~ivYvsC~p~tlaRDl~~-L~-~~Y~l~~v~~~-------DmFP~T~HvE~v~lL~r 352 (353)
T TIGR02143 301 Q---AYERILYISCNPETLKANLEQ-LS-ETHRVERFALF-------DQFPYTHHMECGVLLER 352 (353)
T ss_pred H---cCCcEEEEEcCHHHHHHHHHH-Hh-cCcEEEEEEEc-------ccCCCCCcEEEEEEEEe
Confidence 3 378999999887666666543 43 34888877422 23334455666665554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1e-08 Score=108.03 Aligned_cols=222 Identities=14% Similarity=0.143 Sum_probs=156.8
Q ss_pred CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH
Q 043334 629 IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN 708 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~ 708 (903)
|..++.+++.++.. ....+|..+-...++++.++.+|.+.. +++++|++..+-.+...+-+||.+|++.+-++.-
T Consensus 34 PTdeMr~am~eA~v-gDdVyGeD~tt~rLE~~vA~l~GKEAg----LFv~SGTmgNllaIm~Hc~~rg~eii~gd~~HI~ 108 (384)
T KOG1368|consen 34 PTDEMRRAMAEASV-GDDVYGEDPTTNRLEQRVAELFGKEAG----LFVPSGTMGNLLAIMVHCHQRGSEIIVGDRAHIH 108 (384)
T ss_pred ChHHHHHHHhhccc-CcccccCCccHHHHHHHHHHHhCccce----eeecccccccHHHHHHHhcCCCceEEeccchhee
Confidence 45567777766532 334678877788899999999998765 9999999999988777777799999998877643
Q ss_pred HH---HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-------CcEEEEECCCCCCcc-cCCCHHHHHHHHHHHH
Q 043334 709 YV---SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK-------KPWVYISGPTINPTG-LLYSNKEIENILTVCA 777 (903)
Q Consensus 709 ~~---~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-------~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~ 777 (903)
.. .+....|+.+.++... ++..+|++++++++.... .++|.+.|-+ |-+| .++|.|++.++.++|+
T Consensus 109 ~~E~gg~s~l~gv~~~tv~~e--~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~-~~~Gg~vlPle~~~~v~~lak 185 (384)
T KOG1368|consen 109 RYEQGGISQLAGVHVRTVKNE--NDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTH-NNCGGKVLPLEELDRVKALAK 185 (384)
T ss_pred ehhccChhhhccceeEeeeeC--CCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccc-cccCceEeeHHHHHHHHHHHh
Confidence 22 2446678888887654 344599999999987421 2478887776 6666 9999999999999999
Q ss_pred hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC
Q 043334 778 KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG 857 (903)
Q Consensus 778 k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~ 857 (903)
++|+.+..|-+- .|+..-.+..++......++. +--.|||.+|.| +|-++..++.++++-+.+..
T Consensus 186 ~~glkLH~DGAR---i~NAavasgV~vk~i~~~fDS---------VsiCLSKglgAP---VGSViVG~k~FI~kA~~~RK 250 (384)
T KOG1368|consen 186 RHGLKLHMDGAR---IFNAAVASGVPVKKICSAFDS---------VSICLSKGLGAP---VGSVIVGSKDFIDKARHFRK 250 (384)
T ss_pred ccCCeeecchhh---hhhHHHHcCCCHHHHHHhhhh---------hhhhhhccCCCC---cccEEEccHHHHHHHHHHHH
Confidence 999999999875 455433333333333222221 333589998765 78766666558887665432
Q ss_pred ----CCCCcHHHHHHHHHHH
Q 043334 858 ----LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 858 ----~~~~s~~~Q~aa~~~L 873 (903)
-...+...-.++..+|
T Consensus 251 alGGGmRQsGvLaaaaLval 270 (384)
T KOG1368|consen 251 ALGGGMRQSGVLAAAALVAL 270 (384)
T ss_pred HhcCchhHHHHHHHHHHHHh
Confidence 4445556666666666
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=107.88 Aligned_cols=126 Identities=19% Similarity=0.328 Sum_probs=85.5
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
-.++||+|||.|.++..||.++ .+++++|+++.+++.|++++... ++|+|.++|+.+..+
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~------------------~~V~~~~~dvp~~~P 103 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGL------------------PHVEWIQADVPEFWP 103 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-------------------SSEEEEES-TTT---
T ss_pred cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCC------------------CCeEEEECcCCCCCC
Confidence 3689999999999999999984 69999999999999999987422 589999999988765
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
.. +||+||.. ++. | .-...+.+..+++.+.+.|+|||.+++-+
T Consensus 104 ~~--~FDLIV~S--------------EVl--------Y-------------YL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 104 EG--RFDLIVLS--------------EVL--------Y-------------YLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp SS---EEEEEEE--------------S-G--------G-------------GSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC--CeeEEEEe--------------hHh--------H-------------cCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 43 89999831 011 1 01122345588999999999999999944
Q ss_pred C---------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 191 G---------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 191 ~---------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
. ...+.+.+.++|.+.=-++..+
T Consensus 147 ~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 147 ARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp E-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred ecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 3 3346667777887763333333
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.9e-08 Score=110.82 Aligned_cols=273 Identities=11% Similarity=0.103 Sum_probs=155.9
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC--CC-CchHHHHHHHHHHHhhcCCCCCCCCcEEe-cCchHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM--SE-SEIDVTPSIQQYIKSNFGFPIDINAEFIY-ADCSQS 683 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~--~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~v-t~Gs~~ 683 (903)
...|...||+..|- ..++ .+|.+.+++.+.+.+... .. ...+.+..+++.+.+....+...+..+++ ++++++
T Consensus 35 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGse 114 (425)
T PRK09264 35 DEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTN 114 (425)
T ss_pred eCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHH
Confidence 35677889986653 3344 577888999887765222 11 12345666777776643222111114655 567777
Q ss_pred HHHHHHHHhcc-CC-CeEEEcCCCcHHHHHH-HHHcC------------CEEEEecCCCCCCcc-cCHHHHHHHhhcC--
Q 043334 684 LFNKLVLCCIL-EG-GTLCFPAGSNGNYVSA-ARFLK------------ANIVNIPTESEVGFK-MTEKTLVTILETV-- 745 (903)
Q Consensus 684 al~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~-~~~~G------------~~vv~v~~~~~~~f~-ld~~~L~~~l~~~-- 745 (903)
+...++..... .| .+|+....+|-+.... ....| ..+..+|........ -|++.+++.+...
T Consensus 115 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~ 194 (425)
T PRK09264 115 AVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSS 194 (425)
T ss_pred HHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccC
Confidence 77766654421 23 4677777666554322 22211 023333332100000 1567788877532
Q ss_pred --CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 746 --KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 746 --~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
...+.++.-|-+.-.|. +.+.+.+++|.++|++||+++|+||++.++-..|.. +. ....+-.| |
T Consensus 195 ~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~---~~----~~~~~v~P---D--- 261 (425)
T PRK09264 195 GVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTF---FS----FERAGITP---D--- 261 (425)
T ss_pred CCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHH---HH----HhhcCCCC---C---
Confidence 11245566666555675 578999999999999999999999999765333322 11 11111122 2
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhC-C-CCCCCcHHHHHHHHHHH-hcccccchhHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF-P-GLSKPHSTVRYAIKKLL-GLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~-~-~~~~~s~~~Q~aa~~~L-~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+-+|||.++..|+++|+++++++ + ..+... . .+.+.+.++..++.+.| .... .+.+.++++++.+.++++.+
T Consensus 262 -i~t~~K~l~~~G~pigav~~~~~-i-~~~~~~~~~~T~~gnp~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~ 336 (425)
T PRK09264 262 -IVTLSKSISGYGLPMALVLIKPE-L-DVWKPGEHNGTFRGNNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLE 336 (425)
T ss_pred -EEEeccccCCCccceEEEEEchh-h-hccCCCccCCCCCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH
Confidence 34779999855999999999976 5 444321 1 24455555555554555 2111 12456777777777777665
Q ss_pred HH
Q 043334 900 RL 901 (903)
Q Consensus 900 ~l 901 (903)
.+
T Consensus 337 ~l 338 (425)
T PRK09264 337 EI 338 (425)
T ss_pred HH
Confidence 54
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-08 Score=119.63 Aligned_cols=171 Identities=12% Similarity=0.122 Sum_probs=127.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc--
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF-- 731 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f-- 731 (903)
..+..+..++.||.+.+ .++++|++.++..++.+++.+||.|+++..|+-+....+...|+++++++... +.|
T Consensus 207 I~eAq~~aA~~fgA~~t----~FlvNGST~gn~a~i~a~~~~gd~Vlv~RN~HKSv~~al~L~ga~Pvyl~P~~-~~~Gi 281 (755)
T PRK15029 207 FGESEKYAARVFGADRS----WSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLILTGAKPVYMVPSR-NRYGI 281 (755)
T ss_pred HHHHHHHHHHHhCCCcE----EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCC
Confidence 45566777788898654 99999999999999999999999999999999999999999999999997543 222
Q ss_pred --ccC-----HHHHHHHhhcCC---------CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-Ccc
Q 043334 732 --KMT-----EKTLVTILETVK---------KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEF 794 (903)
Q Consensus 732 --~ld-----~~~L~~~l~~~~---------~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f 794 (903)
.++ ++.+++++.... +.++++++|+ --|.++. +++|+++|+++++.|++||+|+. +.|
T Consensus 282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT--Y~Gv~~d---i~~I~~~~h~~~~~llvDEAhGah~~F 356 (755)
T PRK15029 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT--YDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_pred ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC--CcceeeC---HHHHHHHHHhcCCeEEEECcccccccc
Confidence 234 888988885431 1289999996 7899988 88899999999999999999954 445
Q ss_pred CCCCCCCCchhhhhh--hhccCCCCCCceEEEccCchhcccccceee-EEEe
Q 043334 795 NYEGWGGWDLEGCLS--KLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVL 843 (903)
Q Consensus 795 ~~~~~s~~s~~~~~~--~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~ 843 (903)
.+.. +..+.+. ...... -.++++.|.-|++ |++.-| ++..
T Consensus 357 ~~~~----p~~sa~~~~~~~~~G---ad~~vvqStHKtL--~alTQaS~LHv 399 (755)
T PRK15029 357 NPIY----ADHYAMRGEPGDHNG---PTVFATHSTHKLL--NALSQASYIHV 399 (755)
T ss_pred Cccc----cccccccccccccCC---CceEEEEchhhcc--cchhhhhhhee
Confidence 4321 1001110 001010 1259999999997 577766 5554
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-07 Score=109.53 Aligned_cols=260 Identities=8% Similarity=0.023 Sum_probs=156.7
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..| ...++ ..|.+.+++.+.+.+... .....++...+++++.+..+ .+ .++++++++++..
T Consensus 33 ~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~--~~---~v~f~~SGseA~e 107 (395)
T PRK03715 33 HNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSC--FD---KVFFANSGAEANE 107 (395)
T ss_pred CCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHhhccC--CC---EEEEeCCcHHHHH
Confidence 467789999754 33344 368888888887765321 12235566778888776432 22 7999999999888
Q ss_pred HHHHHhcc------CC-CeEEEcCCCcHHH-HHHHHHcCCEEEE---ecCCCCCCcc----cCHHHHHHHhhcCCCcEEE
Q 043334 687 KLVLCCIL------EG-GTLCFPAGSNGNY-VSAARFLKANIVN---IPTESEVGFK----MTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 687 ~ll~~l~~------pG-D~Vlv~~P~y~~~-~~~~~~~G~~vv~---v~~~~~~~f~----ld~~~L~~~l~~~~~~~vi 751 (903)
.++..... +| ..|+..+.+|-.. .......|..... .|.. .+|. .|++.+++.+.++. ..+
T Consensus 108 ~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~d~~~l~~~l~~~~--aav 183 (395)
T PRK03715 108 GAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQV--PGFPKAELNDIASVEKLITDKT--VAV 183 (395)
T ss_pred HHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCC--CCceeeCCchHHHHHHHcCCCc--eEE
Confidence 88877641 23 4677777766543 3334444432111 1111 1121 47889998886543 344
Q ss_pred EECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 752 ISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 752 l~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
+..|-++..|... +.+.+++|.++|++||+++|.||++.++--.|.. +. ...++-.| . +.+|||.
T Consensus 184 i~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~---~a----~~~~gv~P-----D--i~t~gK~ 249 (395)
T PRK03715 184 MLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTL---FA----YELSGIEP-----D--IMTLGKG 249 (395)
T ss_pred EEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcch---hh----HhhcCCCC-----c--eeeehhh
Confidence 5556646666654 6899999999999999999999999864222221 10 11122122 1 3578999
Q ss_pred cccccceeeEEEeCcHHHHHHHH-hC-CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 831 MLTGALKFGFLVLNHPQLVDAFS-SF-PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~~li~~l~-~~-~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+| .|+.+|.+++.++ +.. +. .. ..+++.++..-.++.+.|+.-.. +.+.+.+.++-+.++++.+
T Consensus 250 lg-~G~p~~av~~~~~-i~~-~~~~~~~~T~~g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~ 315 (395)
T PRK03715 250 IG-GGVPLAALLAKAE-VAV-FEAGDQGGTYNGNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLL 315 (395)
T ss_pred hh-CCcceEEEEEccc-ccc-ccCCCcCCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 98 5799999999877 642 22 11 12445667777777777642211 2234455555555555544
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.5e-09 Score=120.63 Aligned_cols=102 Identities=23% Similarity=0.265 Sum_probs=79.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+++++.|+++.. ++ ++++..+|..+.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l-----------------~v~~~~~D~~~l 225 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL-----------------PVEIRLQDYRDL 225 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC-----------------eEEEEECchhhc
Confidence 467899999999999999998865 6799999999999999998873 22 478888888765
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ++||.|+++..+... |...+..+++++.++|||||.+++
T Consensus 226 --~--~~fD~Ivs~~~~ehv------------------------------------g~~~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 226 --N--GQFDRIVSVGMFEHV------------------------------------GPKNYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred --C--CCCCEEEEeCchhhC------------------------------------ChHHHHHHHHHHHHHcCCCcEEEE
Confidence 2 389999975322111 112234789999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 266 ~~ 267 (383)
T PRK11705 266 HT 267 (383)
T ss_pred EE
Confidence 64
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=111.38 Aligned_cols=141 Identities=14% Similarity=0.159 Sum_probs=89.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhh-hcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE-KKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~-~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||.|..++.||++ |.+|+|+|+|+.+++.+.. .+++.... ..... ......++++.++|+.++
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~--~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQT--RQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccc--cccccccccccCceEEEECcccCC
Confidence 4679999999999999999987 8999999999999998742 23321000 00000 011235799999999998
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....+.||.|+-.- ....++ .+.-.++++.+.+.|+|||++++
T Consensus 110 ~~~~~~~fd~v~D~~------~~~~l~------------------------------~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 110 TAADLADVDAVYDRA------ALIALP------------------------------EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCeeEEEehH------hHhhCC------------------------------HHHHHHHHHHHHHHcCCCCeEEE
Confidence 654434899997211 011111 12234789999999999997544
Q ss_pred Ee---C-----C---CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NM---G-----G---RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~---~-----~---~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. . . ....+.+++++. .+|.+....
T Consensus 154 ~~~~~~~~~~~gPp~~~~~~el~~~~~-~~~~i~~~~ 189 (218)
T PRK13255 154 VTLDYPQEELAGPPFSVSDEEVEALYA-GCFEIELLE 189 (218)
T ss_pred EEEEeCCccCCCCCCCCCHHHHHHHhc-CCceEEEee
Confidence 11 1 1 124555555663 236666553
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-08 Score=113.63 Aligned_cols=207 Identities=8% Similarity=0.046 Sum_probs=135.2
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc-cC--C-----CCCch--HHHH-HHHHHHHhhcCCCCCCCCcEEec---C
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR-QN--M-----SESEI--DVTP-SIQQYIKSNFGFPIDINAEFIYA---D 679 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~--~-----~~G~~--~lr~-ala~~l~~~~G~~~~pe~~I~vt---~ 679 (903)
..+.|+|-.++|. +++.+++++...+.. |. . ..|.. +..+ ..++.+++.+|.+.+ ++.++ +
T Consensus 33 ~~~~l~l~~sen~--~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf~a~~~---~~~~~~~~~ 107 (452)
T PTZ00094 33 QIEGLELIASENF--TSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALEAFGLDPE---EWGVNVQPY 107 (452)
T ss_pred HHcCeeEeccccc--CCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHHHhCCCcc---cceeecCCC
Confidence 3568999888886 467788888887753 31 1 11221 1112 244577788887644 56555 6
Q ss_pred chHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH----------cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcE
Q 043334 680 CSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF----------LKANIVNIPTESEVGFKMTEKTLVTILETVKKPW 749 (903)
Q Consensus 680 Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~----------~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~ 749 (903)
|++++...++.+++++||+|++....++.+...... .+.+++.++++.+ ..+|++++++.++..++++
T Consensus 108 sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~--g~id~~~L~~~l~~~~~~l 185 (452)
T PTZ00094 108 SGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEK--GLIDYDKLEELAKAFRPKL 185 (452)
T ss_pred chHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCC--CCcCHHHHHHHHHHhCCCE
Confidence 777888888999999999999988777665543321 1234455666542 5689999999996533345
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+++. + +.+|...+ +++|.++|+++|+++++|.+++.-....... . ..+. +..++..|..|
T Consensus 186 vi~~--~-s~~g~~~d---i~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~---~-----~~~~------~~D~l~~S~hK 245 (452)
T PTZ00094 186 IIAG--A-SAYPRDID---YKRFREICDSVGAYLMADIAHTSGLVAAGVL---P-----SPFP------YADVVTTTTHK 245 (452)
T ss_pred EEEe--C-CCCCCccC---HHHHHHHHHHcCCEEEEeccchhccccCCCC---C-----CCCC------CCcEEEcCCcc
Confidence 5543 3 45898888 7777788999999999999986433322110 0 0011 24689999999
Q ss_pred hcccccceeeEEEeCcHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~ 850 (903)
+++ |-+.|++.+.+. +.+
T Consensus 246 ~l~--GP~Gg~l~~~~~-~~~ 263 (452)
T PTZ00094 246 SLR--GPRSGLIFYRKK-VKP 263 (452)
T ss_pred CCC--CCCceEEEEecc-cch
Confidence 874 334588888664 444
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.2e-07 Score=108.22 Aligned_cols=180 Identities=15% Similarity=0.144 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh--ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC--ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES 727 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l--~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~ 727 (903)
..++.+.+.+++++.+|.+.. +..-++|+|++++....+... ..+++.|++++-.+.....+++..|.+.+.++.++
T Consensus 63 ~~~~e~~~~~~~a~l~g~~~~-~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~ 141 (380)
T PRK02769 63 SFDFERDVMNFFAELFKIPFN-ESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRIKSRVITSLP 141 (380)
T ss_pred hHHHHHHHHHHHHHHhCCCCC-CCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCCCCceeccCC
Confidence 345667888999999998643 112388999999876554333 25788999999999999999999999999999864
Q ss_pred CCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC---cEEEEecCCCCCcc--CCCCC
Q 043334 728 EVGFKMTEKTLVTILETV---KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG---ARVVIDTAFSGLEF--NYEGW 799 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~---i~VI~DeaY~~l~f--~~~~~ 799 (903)
++.+|+++|++.+++. + .+|+++.++ |+||.+-+ +++|.++|+++| +++.+|-+|+.... .....
T Consensus 142 --~g~id~~~L~~~i~~~~~~t-~lvv~t~gt-t~tG~idp---i~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~ 214 (380)
T PRK02769 142 --NGEIDYDDLISKIKENKNQP-PIIFANIGT-TMTGAIDN---IKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPP 214 (380)
T ss_pred --CCcCcHHHHHHHHHhCCCCc-EEEEEEeCC-CCCcccCC---HHHHHHHHHHhCCCceEEEEEecccceeecccCccc
Confidence 4679999999999875 4 488889998 99999988 788888999998 69999999976322 11110
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
.+.. .. +-..+..|..|.++. -.-+|+++..++ ..+.+
T Consensus 215 -------~~d~-~~-----~vDsis~s~HK~~~~-P~g~G~l~~r~~-~~~~~ 252 (380)
T PRK02769 215 -------PFSF-AD-----GIDSIAISGHKFIGS-PMPCGIVLAKKK-YVERI 252 (380)
T ss_pred -------cCCc-cC-----CCCEEEECCcccCCC-CCCcEEEEEehh-hhhhc
Confidence 0110 00 235677889997763 345899998876 66554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=108.85 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=91.7
Q ss_pred cCCcccCc-----chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc-
Q 043334 4 IPSIFIPE-----DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN- 77 (903)
Q Consensus 4 ~p~vfiP~-----~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~- 77 (903)
+++-+.|. +|..-+.+.|....+......++||||||...+--.|+.+..+++++|+|||+.+++.|++|+..|
T Consensus 71 P~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~ 150 (299)
T PF05971_consen 71 PEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNP 150 (299)
T ss_dssp -TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-
T ss_pred CCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcc
Confidence 45555664 333222233333333233467899999999876544444445899999999999999999999999
Q ss_pred ccccCCCCcchhhhcccCCcEEEEEcc----ccccccCCCCceeEEEECCCCCCCCCccchhhHHhh----------hhh
Q 043334 78 ALDEKGQPIYDAEKKTLLDRVEFHESD----LLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITE----------NAS 143 (903)
Q Consensus 78 gl~~~~~~~~~~~~~~~~~~v~~~~gD----l~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~----------~~~ 143 (903)
++ .++|+++... ++.........||+.+|||||+...+.......... ..+
T Consensus 151 ~L---------------~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p 215 (299)
T PF05971_consen 151 NL---------------ESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPP 215 (299)
T ss_dssp T----------------TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS-------------------------
T ss_pred cc---------------ccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCc
Confidence 77 3688888663 333222223489999999999976542111000000 000
Q ss_pred hhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE--EeCCCCcHHHHHHHHHHCCCeEE
Q 043334 144 EEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF--NMGGRPGQGVCKRLFERRGFRVD 211 (903)
Q Consensus 144 ~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~--~~~~~~~~~~l~~ll~~~gf~~~ 211 (903)
......-. ...+...+...++.+++++...+= .-+.++ .++.......+.+.|++.|-..+
T Consensus 216 ~~~~~G~~-----~El~~~GGEv~FV~rMI~ES~~~~--~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~ 278 (299)
T PF05971_consen 216 KLNFTGQS-----NELWCEGGEVAFVKRMIKESLQLK--DQVRWFTSMVGKKSSLKPLKKELKKLGATNY 278 (299)
T ss_dssp -------T-----TTTHHHHTHHHHHHHHHHHHHHHG--GGEEEEEEEESSGGGHHHHHHHHHHTT-SEE
T ss_pred cccCCCCc-----ceEEcCCccHHHHHHHHHHHHHhC--CCcEEEeecccCcccHHHHHHHHHhcCCceE
Confidence 00000000 111112235788999999998653 334444 56777777788889999885443
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.5e-09 Score=106.66 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=65.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||||||||+.+..+|+.. .+|+.+|+.++..+.|++|+...|+ .|+.+.++|...-.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~lg~----------------~nV~v~~gDG~~G~ 133 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETLGY----------------ENVTVRHGDGSKGW 133 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHcCC----------------CceEEEECCcccCC
Confidence 67999999999999999999985 4999999999999999999999988 47999999998876
Q ss_pred cCCCCceeEEE
Q 043334 110 RDHDIQLERIV 120 (903)
Q Consensus 110 ~~~~~~fD~Iv 120 (903)
.... +||.|+
T Consensus 134 ~~~a-PyD~I~ 143 (209)
T COG2518 134 PEEA-PYDRII 143 (209)
T ss_pred CCCC-CcCEEE
Confidence 5544 899997
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-08 Score=108.53 Aligned_cols=181 Identities=17% Similarity=0.153 Sum_probs=133.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcE--EecCchHHHHHHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEF--IYADCSQSLFNKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I--~vt~Gs~~al~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~ 725 (903)
..++.+.+.+++++.+|.+.+ ++ ++|+|++++....+.+.. .+++.|+++.-.+.+...+++.+|.++..+|+
T Consensus 64 a~~~e~~v~~~ia~llg~~~~---~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~~~~~V~~ 140 (374)
T PLN03032 64 SRQFEVGVLDWFARLWELEKD---EYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMEAVKVPT 140 (374)
T ss_pred HHHHHHHHHHHHHHHhCCCCc---cCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCCCCeEeee
Confidence 356778899999999998654 55 889999999887766543 24568999999999999999999999999998
Q ss_pred CCCCCcccCHHHHHHHhhcCC--CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC-----cEEEEecCCCCC--ccCC
Q 043334 726 ESEVGFKMTEKTLVTILETVK--KPWVYISGPTINPTGLLYSNKEIENILTVCAKYG-----ARVVIDTAFSGL--EFNY 796 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~--~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~-----i~VI~DeaY~~l--~f~~ 796 (903)
+. ++.+|+++|++++++.+ +.+|+++..+ |+||.+-+ +++|.++|+++| +++.+|-+|+.. .|..
T Consensus 141 d~--~g~id~~~L~~~i~~~~~~~~lvv~tagt-t~tG~idp---i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~ 214 (374)
T PLN03032 141 LP--SGEIDYDDLERALAKNRDKPAILNVNIGT-TVKGAVDD---LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVS 214 (374)
T ss_pred CC--CCcCcHHHHHHHHHHcCCCCEEEEEEecC-cCCccCCC---HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccC
Confidence 64 45799999999998642 2367777787 99999977 788888899986 589999999653 2222
Q ss_pred CCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 797 EGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 797 ~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
... .+. +.. .-..+.-|..|..+ .-.-+|.++..++ .++.+..
T Consensus 215 ~~~-------~~~-~~~-----~vDSis~s~HK~~g-~P~g~G~ll~r~~-~~~~~~~ 257 (374)
T PLN03032 215 RAP-------EVT-FRK-----PIGSVSVSGHKFLG-CPMPCGVALTRKK-HVKALSQ 257 (374)
T ss_pred CCc-------ccC-CCc-----CCcEEEECcccccC-CCcCeEEEEEEch-hhHhhcc
Confidence 110 011 000 13456778899776 2345789999876 6666543
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.3e-09 Score=114.86 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=64.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+++..+. .+|+|+|+++++++.|++|+..+++ +++.++++|..+.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~----------------~nV~~i~gD~~~~ 143 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI----------------ENVIFVCGDGYYG 143 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEeCChhhc
Confidence 5789999999999999999988653 4799999999999999999988876 4799999998776
Q ss_pred ccCCCCceeEEEE
Q 043334 109 CRDHDIQLERIVG 121 (903)
Q Consensus 109 ~~~~~~~fD~Iv~ 121 (903)
.... .+||+|++
T Consensus 144 ~~~~-~~fD~Ii~ 155 (322)
T PRK13943 144 VPEF-APYDVIFV 155 (322)
T ss_pred cccc-CCccEEEE
Confidence 5443 37999985
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.4e-09 Score=107.77 Aligned_cols=117 Identities=18% Similarity=0.252 Sum_probs=93.9
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
-.-.|+..|.+.. ..++|||+|++.|+-++.+|...| +.+++.+|+++++.+.|++|++..|++
T Consensus 46 e~g~~L~~L~~~~----~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~----------- 110 (219)
T COG4122 46 ETGALLRLLARLS----GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD----------- 110 (219)
T ss_pred hHHHHHHHHHHhc----CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----------
Confidence 4445556655554 478999999999999999999998 779999999999999999999999984
Q ss_pred cccCCcEEEEE-ccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHH
Q 043334 92 KTLLDRVEFHE-SDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLI 169 (903)
Q Consensus 92 ~~~~~~v~~~~-gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~ 169 (903)
++++.+. +|..+.... ..++||+|+ +..+. ..|
T Consensus 111 ----~~i~~~~~gdal~~l~~~~~~~fDliF-----IDadK------------------------------------~~y 145 (219)
T COG4122 111 ----DRIELLLGGDALDVLSRLLDGSFDLVF-----IDADK------------------------------------ADY 145 (219)
T ss_pred ----ceEEEEecCcHHHHHHhccCCCccEEE-----EeCCh------------------------------------hhC
Confidence 6789998 598887654 345999998 22211 124
Q ss_pred HHHHHHHhhcccCCcEEEEE
Q 043334 170 ARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 170 ~~~l~~~~~~LkpgG~ll~~ 189 (903)
..+++.+.+.|+|||.++++
T Consensus 146 p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 146 PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHHHHHHhCCCcEEEEe
Confidence 47899999999999999983
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-08 Score=111.10 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|....+.. .....++.|.++|+.++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~-----------~~~~~~~~f~~~Dl~~l- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAA-----------LPPEVLPKFEANDLESL- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccc-----------cccccceEEEEcchhhc-
Confidence 5789999999999999999986 689999999999999999998654210 00013688999998654
Q ss_pred cCCCCceeEEEEC
Q 043334 110 RDHDIQLERIVGC 122 (903)
Q Consensus 110 ~~~~~~fD~Iv~N 122 (903)
. ++||+|+++
T Consensus 210 -~--~~fD~Vv~~ 219 (315)
T PLN02585 210 -S--GKYDTVTCL 219 (315)
T ss_pred -C--CCcCEEEEc
Confidence 2 389999875
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=8e-09 Score=111.65 Aligned_cols=104 Identities=9% Similarity=0.121 Sum_probs=84.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+.++|||+|||+|+.++.+|...+ +.+|+++|.++++.+.|++|++..|+ .++++++.||..+.
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl---------------~~~I~li~GdA~e~ 182 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV---------------SHKVNVKHGLAAES 182 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEcCHHHH
Confidence 468999999999999999998765 45899999999999999999999988 36899999999876
Q ss_pred ccCC-----CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRDH-----DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~~-----~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
.... .++||+|+- ..+. ..|...++.+.+.|+||
T Consensus 183 L~~l~~~~~~~~FD~VFI-----Da~K------------------------------------~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 183 LKSMIQNGEGSSYDFAFV-----DADK------------------------------------RMYQDYFELLLQLVRVG 221 (278)
T ss_pred HHHHHhcccCCCCCEEEE-----CCCH------------------------------------HHHHHHHHHHHHhcCCC
Confidence 4321 248999982 1111 12447789999999999
Q ss_pred cEEEEE
Q 043334 184 GIMIFN 189 (903)
Q Consensus 184 G~ll~~ 189 (903)
|.++++
T Consensus 222 GvIV~D 227 (278)
T PLN02476 222 GVIVMD 227 (278)
T ss_pred cEEEEe
Confidence 999984
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=92.32 Aligned_cols=103 Identities=27% Similarity=0.406 Sum_probs=80.5
Q ss_pred eEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCC
Q 043334 33 TVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDH 112 (903)
Q Consensus 33 ~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~ 112 (903)
+++|+|||+|..+..+++ .+..+++++|+++.+++.++++....+ ..++.++.+|..+.....
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL----------------ADNVEVLKGDAEELPPEA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc----------------ccceEEEEcChhhhcccc
Confidence 589999999999999887 557899999999999999986443332 257999999998876422
Q ss_pred CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 113 DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 113 ~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.++||+|++|+++... . .....+++.+.+.|+|||.+++.
T Consensus 64 ~~~~d~i~~~~~~~~~------~-------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHL------V-------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeeh------h-------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3489999998877632 0 11237789999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-08 Score=109.32 Aligned_cols=129 Identities=15% Similarity=0.088 Sum_probs=87.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|.++..+++..+ ..+|+++|++++|.+.....+... .++.++.+|+.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r------------------~NI~~I~~Da~ 191 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR------------------PNIVPIIEDAR 191 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------------------CCCEEEECCcc
Confidence 45788999999999999999999874 358999999997664433322111 36888999986
Q ss_pred ccc--cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 107 AYC--RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 107 ~~~--~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
... .....+||+|+++... ++ ..+.++.++.++|||||
T Consensus 192 ~p~~y~~~~~~vDvV~~Dva~---pd-------------------------------------q~~il~~na~r~LKpGG 231 (293)
T PTZ00146 192 YPQKYRMLVPMVDVIFADVAQ---PD-------------------------------------QARIVALNAQYFLKNGG 231 (293)
T ss_pred ChhhhhcccCCCCEEEEeCCC---cc-------------------------------------hHHHHHHHHHHhccCCC
Confidence 532 0011279999865311 00 01245667899999999
Q ss_pred EEEEEeC-----CCCcHHHH----HHHHHHCCCeEEEEE
Q 043334 185 IMIFNMG-----GRPGQGVC----KRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~~-----~~~~~~~l----~~ll~~~gf~~~~~~ 214 (903)
.|++... .....+.+ .+++++.||+..+..
T Consensus 232 ~~vI~ika~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 232 HFIISIKANCIDSTAKPEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred EEEEEEeccccccCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 9999433 22223322 367899999988764
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-09 Score=101.53 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|++++|+|||+|.++++.+ ..++..|+|+||+|++++++++|+....+ +++++++|+.++
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNaeEfEv-----------------qidlLqcdildl 108 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAEEFEV-----------------QIDLLQCDILDL 108 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchHHhhh-----------------hhheeeeeccch
Confidence 689999999999999997644 45567899999999999999999976655 679999999998
Q ss_pred ccCCCCceeEEEECCCCCCCCC
Q 043334 109 CRDHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~ 130 (903)
.... +.||.++.||||-....
T Consensus 109 e~~~-g~fDtaviNppFGTk~~ 129 (185)
T KOG3420|consen 109 ELKG-GIFDTAVINPPFGTKKK 129 (185)
T ss_pred hccC-CeEeeEEecCCCCcccc
Confidence 8766 59999999999986543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-08 Score=108.75 Aligned_cols=155 Identities=17% Similarity=0.222 Sum_probs=98.4
Q ss_pred CcccCcchhHHH-HHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCC
Q 043334 6 SIFIPEDWSFTF-YEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQ 84 (903)
Q Consensus 6 ~vfiP~~w~~~~-~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~ 84 (903)
||+|-.+|-..+ ++.+..+-. .++|++|||||||+|+.+..++.. ++..|+|+|.++......+.--...|.
T Consensus 91 gi~IDtEWrSd~KW~rl~p~l~-~L~gk~VLDIGC~nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~----- 163 (315)
T PF08003_consen 91 GIHIDTEWRSDWKWDRLLPHLP-DLKGKRVLDIGCNNGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQ----- 163 (315)
T ss_pred CEeecccccccchHHHHHhhhC-CcCCCEEEEecCCCcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCC-----
Confidence 677776665322 233343332 378999999999999999998887 456899999998766554322111221
Q ss_pred CcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccc
Q 043334 85 PIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQF 164 (903)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~ 164 (903)
..++..+..-+.+++. .+.||+|+| |.-.-|...|
T Consensus 164 ----------~~~~~~lplgvE~Lp~--~~~FDtVF~------------MGVLYHrr~P--------------------- 198 (315)
T PF08003_consen 164 ----------DPPVFELPLGVEDLPN--LGAFDTVFS------------MGVLYHRRSP--------------------- 198 (315)
T ss_pred ----------CccEEEcCcchhhccc--cCCcCEEEE------------eeehhccCCH---------------------
Confidence 0123333234444443 348999985 1111111111
Q ss_pred cHHHHHHHHHHHhhcccCCcEEEEEeC-----------------------CCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 165 GLGLIARAVEEGIGVIKPSGIMIFNMG-----------------------GRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 165 g~~~~~~~l~~~~~~LkpgG~ll~~~~-----------------------~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
-..++++.+.|+|||.+++++- ..+....++.++++.||+.+++....
T Consensus 199 -----l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 199 -----LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred -----HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 1568899999999999998322 11256677899999999999885443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=109.70 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=98.6
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cccccCCCCcchhhh
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL-NALDEKGQPIYDAEK 91 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~-~gl~~~~~~~~~~~~ 91 (903)
+...+++.+.. .++.+||..|||.|.....||++ |.+|+|+|+|+.+|+.+.+.... ...... ... .
T Consensus 25 ~L~~~~~~l~~-----~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~----~~~-~ 92 (218)
T PF05724_consen 25 ALVEYLDSLAL-----KPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSV----GGF-K 92 (218)
T ss_dssp HHHHHHHHHTT-----STSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTC----TTE-E
T ss_pred HHHHHHHhcCC-----CCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccc----cce-e
Confidence 44555555322 24679999999999999999998 78999999999999998432211 111000 000 0
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
.....+|+++++|++++.....++||+|+ .......++...+ .+
T Consensus 93 ~~~~~~i~~~~gDfF~l~~~~~g~fD~iy------Dr~~l~Alpp~~R------------------------------~~ 136 (218)
T PF05724_consen 93 RYQAGRITIYCGDFFELPPEDVGKFDLIY------DRTFLCALPPEMR------------------------------ER 136 (218)
T ss_dssp EETTSSEEEEES-TTTGGGSCHHSEEEEE------ECSSTTTS-GGGH------------------------------HH
T ss_pred eecCCceEEEEcccccCChhhcCCceEEE------EecccccCCHHHH------------------------------HH
Confidence 11245799999999998766656899997 2233333433333 27
Q ss_pred HHHHHhhcccCCcEEEEEe--------CC---CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 172 AVEEGIGVIKPSGIMIFNM--------GG---RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 172 ~l~~~~~~LkpgG~ll~~~--------~~---~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
..+.+.++|+|||.+++.. .+ ....+.+++++. .+|++.....
T Consensus 137 Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 137 YAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred HHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 7999999999999944411 11 124556677777 6788877743
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.8e-09 Score=111.47 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHH----HHHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNY----VSAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~----~~~~~~~G~~vv~v~~~~ 727 (903)
+-...+++.++..-|--. -+.++.+++++..++..++++||.|+...--|++. ...++..|.++..++-
T Consensus 62 PT~~vlE~RiAaLEGG~a-----a~a~aSG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~-- 134 (426)
T COG2873 62 PTTDVLEERIAALEGGVA-----ALAVASGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDP-- 134 (426)
T ss_pred chHHHHHHHHHHhhcchh-----hhhhccchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCC--
Confidence 345677777777655332 23345567788888999999999999888766654 4445888999999975
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.|++.+++++++++| +|++.+-. ||-+.+.. +++|.++|+++++++|+|..+..- + =+++
T Consensus 135 -----~d~~~~~~aI~~nTk-avf~Etig-NP~~~v~D---ie~ia~iAh~~gvpliVDNT~atp------y---l~rP- 194 (426)
T COG2873 135 -----DDPENFEAAIDENTK-AVFAETIG-NPGLDVLD---IEAIAEIAHRHGVPLIVDNTFATP------Y---LCRP- 194 (426)
T ss_pred -----CCHHHHHHHhCcccc-eEEEEecc-CCCccccC---HHHHHHHHHHcCCcEEEecCCCcc------e---ecch-
Confidence 368999999999995 99999998 99999988 899999999999999999988421 1 1111
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+. . +-.|+++|+||..|..|--+|-++..
T Consensus 195 ~~---h-----GADIVvHS~TK~igGhGt~iGG~iVD 223 (426)
T COG2873 195 IE---H-----GADIVVHSATKYIGGHGTAIGGVIVD 223 (426)
T ss_pred hh---c-----CCCEEEEeecccccCCccccceEEEe
Confidence 11 1 35799999999999999999876654
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-09 Score=113.85 Aligned_cols=126 Identities=18% Similarity=0.240 Sum_probs=81.7
Q ss_pred CCCeEEEeCCccCH----HHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHHh----cccccCC-CCcchh------
Q 043334 30 KDKTVAELGCGNGW----ITIAIAEKWL-----PSKVYGLDINPRAIRISWINLYL----NALDEKG-QPIYDA------ 89 (903)
Q Consensus 30 ~~~~VLDlGCGtG~----lsi~la~~~~-----~~~V~giDis~~al~~A~~n~~~----~gl~~~~-~~~~~~------ 89 (903)
++.+|+|+|||||. +++.+++..+ +.+|+|+|+|+.|++.|+++... .+++..- ..+-+.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 6677777654 46899999999999999986421 1110000 000000
Q ss_pred hhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHH
Q 043334 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLI 169 (903)
Q Consensus 90 ~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~ 169 (903)
-.+.+..+++|.++|+.+..... ++||+|+|.-- ..++. .+..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~-~~fD~I~crnv------l~yf~------------------------------~~~~ 221 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPL-GDFDLIFCRNV------LIYFD------------------------------EPTQ 221 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCcc-CCCCEEEechh------HHhCC------------------------------HHHH
Confidence 01112357999999999875433 48999996211 11111 1123
Q ss_pred HHHHHHHhhcccCCcEEEEEeCC
Q 043334 170 ARAVEEGIGVIKPSGIMIFNMGG 192 (903)
Q Consensus 170 ~~~l~~~~~~LkpgG~ll~~~~~ 192 (903)
.++++++++.|+|||.+++....
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEECcc
Confidence 37899999999999999986544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.9e-09 Score=109.09 Aligned_cols=82 Identities=23% Similarity=0.423 Sum_probs=62.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|+|+.||.|.+++.+|+..++.+|+++|+||.+++..++|++.|+++ +++..+++|..+
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~---------------~~i~~~~~D~~~ 163 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVE---------------NRIEVINGDARE 163 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-T---------------TTEEEEES-GGG
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCC---------------CeEEEEcCCHHH
Confidence 34789999999999999999999666789999999999999999999999983 679999999999
Q ss_pred cccCCCCceeEEEECCCCC
Q 043334 108 YCRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~ 126 (903)
... .+.||.|++|.|..
T Consensus 164 ~~~--~~~~drvim~lp~~ 180 (200)
T PF02475_consen 164 FLP--EGKFDRVIMNLPES 180 (200)
T ss_dssp -----TT-EEEEEE--TSS
T ss_pred hcC--ccccCEEEECChHH
Confidence 876 33899999987765
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-09 Score=108.09 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~-~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||||+.+..++...+.. +|+++|+++..++.|++|+...+. .++.++++|...
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~----------------~nv~~~~gdg~~ 134 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI----------------DNVEVVVGDGSE 134 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT----------------HSEEEEES-GGG
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc----------------CceeEEEcchhh
Confidence 468999999999999999999987543 799999999999999999998886 489999999887
Q ss_pred cccCCCCceeEEEEC
Q 043334 108 YCRDHDIQLERIVGC 122 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~N 122 (903)
..... .+||.|+.+
T Consensus 135 g~~~~-apfD~I~v~ 148 (209)
T PF01135_consen 135 GWPEE-APFDRIIVT 148 (209)
T ss_dssp TTGGG--SEEEEEES
T ss_pred ccccC-CCcCEEEEe
Confidence 65544 389999853
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.2e-09 Score=110.82 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=56.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh----CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW----LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~----~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++.+|||+|||+|.++..+++.. ++.+|+|+|+|++|++.|+++...+ ++++.++|.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-------------------~~~~~~~~~ 120 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-------------------GVTFRQAVS 120 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-------------------CCeEEEEec
Confidence 56799999999999999988643 3469999999999999998876332 344555544
Q ss_pred cccccCCCCceeEEEECCCCC
Q 043334 106 LAYCRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 106 ~~~~~~~~~~fD~Iv~NpPy~ 126 (903)
...... +++||+|++|-...
T Consensus 121 ~~l~~~-~~~fD~V~~~~~lh 140 (232)
T PRK06202 121 DELVAE-GERFDVVTSNHFLH 140 (232)
T ss_pred cccccc-CCCccEEEECCeee
Confidence 433322 34899999875443
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=121.28 Aligned_cols=107 Identities=17% Similarity=0.149 Sum_probs=72.9
Q ss_pred CcccCcchhHHHHHHhhcCCCC-C-CCCCeEEEeCCccCHHHHHHHHHhCC--------CEEEEEeCCHHHHHHHHHHHH
Q 043334 6 SIFIPEDWSFTFYEGLNRHPDS-I-LKDKTVAELGCGNGWITIAIAEKWLP--------SKVYGLDINPRAIRISWINLY 75 (903)
Q Consensus 6 ~vfiP~~w~~~~~~~L~~~~~~-~-~~~~~VLDlGCGtG~lsi~la~~~~~--------~~V~giDis~~al~~A~~n~~ 75 (903)
.+|.|..-+..+.+.+...... . ....+|||.|||+|.+.++++...+. .+++|+|+++.++..++.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 3678875555555554332110 0 14568999999999999999887642 579999999999999999986
Q ss_pred hcccccCCCCcchhhhcccCCcEEEEEcccccc----ccCCCCceeEEEECCCCCCC
Q 043334 76 LNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY----CRDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 76 ~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~----~~~~~~~fD~Iv~NpPy~~~ 128 (903)
..+. ..+.+.++|.... .....++||+||+||||...
T Consensus 85 ~~~~----------------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 85 EFAL----------------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred hcCC----------------CCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence 5541 1244555554322 11112479999999999964
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.6e-07 Score=105.73 Aligned_cols=245 Identities=10% Similarity=0.049 Sum_probs=148.0
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..| ...++ ..+.+.+++.+.+.+.... ....+....+++.+.+....... + .++++++++++
T Consensus 38 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~-~-~v~f~~SGseA 115 (445)
T PRK08593 38 DVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFE-K-RVTFGLSGSDA 115 (445)
T ss_pred eCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC-C-EEEECCchHHH
Confidence 3567788998655 33344 5788899998888764321 12345566778888775432211 2 79999999998
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHH-HHHHHHcCC-------------EEEEecCCCCC--Ccc-cC-------HHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNY-VSAARFLKA-------------NIVNIPTESEV--GFK-MT-------EKTL 738 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~-~~~~~~~G~-------------~vv~v~~~~~~--~f~-ld-------~~~L 738 (903)
...++..... .| ..|+...-+|-+. .......+. .++.+|..... .+. .+ ++.+
T Consensus 116 ~e~AiklAr~~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
T PRK08593 116 NDGIIKFARAYTGRPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPL 195 (445)
T ss_pred HHHHHHHHHHhhCCCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHH
Confidence 8887764321 23 3566666655443 223222221 12233321100 000 01 1344
Q ss_pred HHHhhc----CCCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 739 VTILET----VKKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 739 ~~~l~~----~~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
++.+.. ... +.+|.-|-+...|.+ .+.+.+++|.++|++||+++|.||++.++-..|..+ ....+.-
T Consensus 196 ~~~~~~~~~~~~i-AavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~-------a~~~~gv 267 (445)
T PRK08593 196 KEMFEKYLPADEV-ACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWS-------SISHFNI 267 (445)
T ss_pred HHHHHhhcCCCce-EEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHH-------HHHhcCC
Confidence 444431 233 555555665777876 789999999999999999999999997653333221 1122222
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
.| | +-+|||.++ .|+++|+++++++ +++.+.... .+.+.++.+..++.+.|+
T Consensus 268 ~p---D----i~t~gK~l~-~G~p~gav~~~~~-i~~~~~~~~~~~T~~~~pl~~aaa~a~l~ 321 (445)
T PRK08593 268 TP---D----LMSFGKSLA-GGMPMSAIVGRKE-IMESLEAPAHLFTTGANPVSCAAALATID 321 (445)
T ss_pred CC---C----Eeeeccccc-CCcccEEEEEcHH-HHhhhccCCCCCCCCCCHHHHHHHHHHHH
Confidence 22 1 337899997 7899999999887 888875322 255677788887877774
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-07 Score=104.96 Aligned_cols=269 Identities=9% Similarity=0.024 Sum_probs=159.6
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC--C-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM--S-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~--~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...||+..|. ..++ .++.+.+++.+.+.+... . ....+....+++.+.+....+.+ .++++++++++
T Consensus 48 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~---~v~f~~sGseA 124 (460)
T PRK06541 48 DDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLN---RVFFTTGGSEA 124 (460)
T ss_pred eCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcC---EEEEcCCcHHH
Confidence 35678889987662 3344 567889998888876421 1 12334556677777765432233 79999999988
Q ss_pred HHHHHHHhcc----C----CCeEEEcCCCcHHHHHHH-HHcCC------------EEEEecCCCCC---CcccC------
Q 043334 685 FNKLVLCCIL----E----GGTLCFPAGSNGNYVSAA-RFLKA------------NIVNIPTESEV---GFKMT------ 734 (903)
Q Consensus 685 l~~ll~~l~~----p----GD~Vlv~~P~y~~~~~~~-~~~G~------------~vv~v~~~~~~---~f~ld------ 734 (903)
...++..... . ..+|+...-+|-+....+ ...|. .+..+|...-- .|.-+
T Consensus 125 ve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 204 (460)
T PRK06541 125 VESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGR 204 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHH
Confidence 8877764431 1 246776666665433222 11111 12222221100 01112
Q ss_pred --HHHHHHHhhc--CCCcEEEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 735 --EKTLVTILET--VKKPWVYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 735 --~~~L~~~l~~--~~~~~vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
++.+++.+.. ....+.++.-|-+++.|.+.+ .+.+++|.++|+++|+++|.||++.++--.+.. +. ..
T Consensus 205 ~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~---~a----~~ 277 (460)
T PRK06541 205 WAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEM---FG----CE 277 (460)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchh---hh----hh
Confidence 2567777752 122467777786699998865 899999999999999999999999655211111 11 11
Q ss_pred hhccCCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHhC-----C-CCCCCcHHHHHHHHHHHhcccccchh
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSSF-----P-GLSKPHSTVRYAIKKLLGLRERKARD 882 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~~-----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~ 882 (903)
..+-.| .++ +|||.++ .|+ ++|+++++++ +++.+... . .+.+.++..-.++.+.|+.-.. +.
T Consensus 278 ~~gv~P-----Div--t~gK~l~-~G~~pigav~~~~~-i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~--~~ 346 (460)
T PRK06541 278 RFGYVP-----DII--TCAKGIT-SGYSPLGAMIASDR-LFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFER--EG 346 (460)
T ss_pred hcCCCC-----CEE--Eeccccc-CCccceeEEEEcHH-HHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHh--cc
Confidence 111122 222 5899998 787 9999999988 88877532 1 2455566776777777642111 22
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043334 883 LMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 883 ~~~~l~~~r~~y~~Rr~~ 900 (903)
+.+.+.++.+.++++.+.
T Consensus 347 ~~~~~~~~g~~l~~~L~~ 364 (460)
T PRK06541 347 LLDHVRDNEPAFRATLEK 364 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=119.80 Aligned_cols=126 Identities=20% Similarity=0.198 Sum_probs=88.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.+++.. +. .++++++++|+.+..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~---~~---------------~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN---GH---------------YKNVKFMCADVTSPD 96 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh---cc---------------CCceEEEEecccccc
Confidence 4679999999999999999987 569999999999998875422 11 247999999996421
Q ss_pred -cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 -RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 -~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+...++||+|+++.++...++ +....+++++.++|||||.+++
T Consensus 97 ~~~~~~~fD~I~~~~~l~~l~~------------------------------------~~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 97 LNISDGSVDLIFSNWLLMYLSD------------------------------------KEVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred cCCCCCCEEEEehhhhHHhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 112248999998755442111 1123789999999999999988
Q ss_pred EeCC---------------CCcHHHHHHHHHHCCCeEE
Q 043334 189 NMGG---------------RPGQGVCKRLFERRGFRVD 211 (903)
Q Consensus 189 ~~~~---------------~~~~~~l~~ll~~~gf~~~ 211 (903)
.... ........+++.+.||...
T Consensus 141 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 141 RESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred EeccCCCCCcccccCCCCeecChHHHHHHHHHheeccC
Confidence 4211 0123445567777776653
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=106.63 Aligned_cols=105 Identities=25% Similarity=0.380 Sum_probs=83.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+.++|||||||+|+-++.+|+..| +.+|+.+|++++..+.|+++++..|++ ++++++.||..+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~---------------~~I~~~~gda~~~ 109 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD---------------DRIEVIEGDALEV 109 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG---------------GGEEEEES-HHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC---------------CcEEEEEeccHhh
Confidence 357999999999999999999876 579999999999999999999998873 6899999999875
Q ss_pred ccC----C-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRD----H-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~----~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
... . .++||+|+ +..+. ..|...++.+.+.|+||
T Consensus 110 l~~l~~~~~~~~fD~VF-----iDa~K------------------------------------~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVF-----IDADK------------------------------------RNYLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHHHHTTTTTSEEEEE-----EESTG------------------------------------GGHHHHHHHHHHHEEEE
T ss_pred HHHHHhccCCCceeEEE-----Ecccc------------------------------------cchhhHHHHHhhhccCC
Confidence 331 1 24799998 21111 11346788888999999
Q ss_pred cEEEEEe
Q 043334 184 GIMIFNM 190 (903)
Q Consensus 184 G~ll~~~ 190 (903)
|.++++-
T Consensus 149 gvii~DN 155 (205)
T PF01596_consen 149 GVIIADN 155 (205)
T ss_dssp EEEEEET
T ss_pred eEEEEcc
Confidence 9999953
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=108.71 Aligned_cols=142 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+++||++|||+|.++..+++..+..+++++|+|+++++.|++++...+. ....++++++.+|..++.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~------------~~~~~~v~i~~~D~~~~l 139 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG------------SYDDPRVDLQIDDGFKFL 139 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc------------cccCCceEEEECchHHHH
Confidence 45699999999999999888765567999999999999999998743221 001257899999998765
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+.+++....+.... ....+++.+.+.|+|||++++.
T Consensus 140 ~~~~~~yDvIi~D~~~~~~~~~~l----------------------------------~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 140 ADTENTFDVIIVDSTDPVGPAETL----------------------------------FTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HhCCCCccEEEEeCCCCCCcccch----------------------------------hHHHHHHHHHHHhCCCcEEEEc
Confidence 443458999998766432211110 0126788999999999999997
Q ss_pred eCCCC-cHHHHHH---HHHHCCCeEEEEEehhh
Q 043334 190 MGGRP-GQGVCKR---LFERRGFRVDKLWQTKI 218 (903)
Q Consensus 190 ~~~~~-~~~~l~~---ll~~~gf~~~~~~~~~~ 218 (903)
.+... ....++. .+++. |..+..+...+
T Consensus 186 ~~~~~~~~~~~~~~~~tl~~~-F~~v~~~~~~v 217 (270)
T TIGR00417 186 SESPWIQLELITDLKRDVKEA-FPITEYYTANI 217 (270)
T ss_pred CCCcccCHHHHHHHHHHHHHH-CCCeEEEEEEc
Confidence 55432 2333222 23333 77776655543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.5e-07 Score=99.73 Aligned_cols=217 Identities=14% Similarity=0.153 Sum_probs=151.0
Q ss_pred CCCcHHHHHHHHHHHHccCCC-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch---HHHHHHHHHHhccCC
Q 043334 627 LPIPSLVKAAIFESFARQNMS-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS---QSLFNKLVLCCILEG 696 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs---~~al~~ll~~l~~pG 696 (903)
..-.+.+++++.+.+.+|+.. .|.......+++.+++.++.+.. +++++-- ..-+..+...+ ||
T Consensus 184 ms~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aA----LlFsSCfVANDstLftLak~l--pg 257 (570)
T KOG1360|consen 184 MSRHPEVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAA----LLFSSCFVANDSTLFTLAKKL--PG 257 (570)
T ss_pred ccCChHHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcce----eeeeeeeeccchHHHHHHHHC--CC
Confidence 345789999999999987542 34555666777888887776533 3333211 12244444433 88
Q ss_pred CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 697 GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 697 D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
-+|.-..-.+.....-++..|+.-..+.. -|++.|++++.. ..+++|-+.+-+ ..+|.+.+ +++|+
T Consensus 258 cei~SD~gNHASMI~GIrns~v~K~IFrH-------ND~~hL~~lL~~~~~svPKivAFEtVh-SM~Gavcp---leelc 326 (570)
T KOG1360|consen 258 CEIFSDEGNHASMIQGIRNSRVPKHIFRH-------NDLDHLEQLLQSSPKSVPKIVAFETVH-SMDGAVCP---LEELC 326 (570)
T ss_pred cEEeccccchHHHHHHhhhcCCcceeecc-------CCHHHHHHHHHhCCCCCCceEEEeeee-ccCCCcCC---HHHHH
Confidence 88888887888888888888877665554 268888888764 234577777776 99999999 88999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
+++++||.+-.+||+++--.|+..... +..-++.. ..-.|.-+++.|+||+-| |||.+... +++.++
T Consensus 327 Dvah~yGAiTFlDEVHAVGlYG~rGaG-------vgerdGvm--~kvDiIsGTLgKafGcVG---GYIAat~~-LvDmiR 393 (570)
T KOG1360|consen 327 DVAHKYGAITFLDEVHAVGLYGPRGAG-------VGERDGVM--HKVDIISGTLGKAFGCVG---GYIAATRK-LVDMIR 393 (570)
T ss_pred HHHHHhCceeeeehhhhhccccCCCCC-------ccccCCcc--hhhhhcccchhhhccccc---ceehhhhh-HHHHHH
Confidence 999999999999999987778765431 11111111 125688999999999888 99999998 999999
Q ss_pred hCCC----CCCCcHHHHHHHHHHH
Q 043334 854 SFPG----LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 854 ~~~~----~~~~s~~~Q~aa~~~L 873 (903)
.+.. +.+.++..-..|..+.
T Consensus 394 SyAaGFIFTTSLPP~vl~GAleaV 417 (570)
T KOG1360|consen 394 SYAAGFIFTTSLPPMVLAGALEAV 417 (570)
T ss_pred HhcCceEEecCCChHHHHhHHHHH
Confidence 9874 3333444444444443
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5e-07 Score=105.99 Aligned_cols=202 Identities=9% Similarity=0.012 Sum_probs=122.7
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHH-HccCCC-------CCchHHHHHHHH----HHHhhcCCCCCCCCcEEe----c
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESF-ARQNMS-------ESEIDVTPSIQQ----YIKSNFGFPIDINAEFIY----A 678 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al-~~y~~~-------~G~~~lr~ala~----~l~~~~G~~~~pe~~I~v----t 678 (903)
...|+|-.++|. +++.+++++...+ .+|... .|.. +.+.+.+ ...+.++...+ .+.+ .
T Consensus 34 ~~~l~liasen~--~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~-~~d~lE~~~~~~~~~~f~~~~~---~~~~nv~~~ 107 (475)
T PLN03226 34 WKGLELIASENF--TSRAVMEALGSCLTNKYSEGLPGARYYGGNE-YIDQIETLCQKRALEAFRLDPE---KWGVNVQPL 107 (475)
T ss_pred HcCeeEecCCcc--CCHHHHHHHhhHHhccccCCCCCCcCcCCCh-hHHHHHHHHHHHHHHHhCCCcc---eeEEecCcC
Confidence 467788777775 4677888888887 455321 2332 4344433 34455666543 3433 5
Q ss_pred CchHHHHHHHHHHhccCCCeEEEcCC---CcHHHHHHH---HHcCCEE----EEecCCCCCCcccCHHHHHHHhhcCCCc
Q 043334 679 DCSQSLFNKLVLCCILEGGTLCFPAG---SNGNYVSAA---RFLKANI----VNIPTESEVGFKMTEKTLVTILETVKKP 748 (903)
Q Consensus 679 ~Gs~~al~~ll~~l~~pGD~Vlv~~P---~y~~~~~~~---~~~G~~v----v~v~~~~~~~f~ld~~~L~~~l~~~~~~ 748 (903)
+|+++.+. ++.++++|||+|+..+. +|..+.... +..+... +++..+. ++..+|++++++.+...+++
T Consensus 108 SG~~AN~a-v~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~-~~g~iD~d~Le~~l~~~~pk 185 (475)
T PLN03226 108 SGSPANFA-VYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDE-STGLIDYDKLEKKAMLFRPK 185 (475)
T ss_pred chHHHHHH-HHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecC-CCCCcCHHHHHHHHhhcCCe
Confidence 66555554 68889999999998553 333322221 1122222 2445554 34569999999988754434
Q ss_pred EEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 749 WVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 749 ~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
+ +++..+ + +|...+ +++|.++|+++|+++++|+++..-.......+ ..++ ...++++|++
T Consensus 186 l-Iv~~~S-~-~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--------~p~~------~~Div~~t~h 245 (475)
T PLN03226 186 L-IIAGAS-A-YPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAA--------SPFE------YCDVVTTTTH 245 (475)
T ss_pred E-EEEecC-c-CCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--------CCCC------CCeEEEecCc
Confidence 4 455444 4 666666 66888999999999999998853232222110 0011 2458899999
Q ss_pred hhcccccceeeEEEeCcH
Q 043334 829 LKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 829 K~~g~~GlRiG~lv~~~~ 846 (903)
|+++ |-+-|++++++.
T Consensus 246 K~L~--GP~Gg~I~~~~~ 261 (475)
T PLN03226 246 KSLR--GPRGGMIFFRKG 261 (475)
T ss_pred cccc--CCCceEEEEchh
Confidence 9983 344489988764
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.5e-08 Score=104.53 Aligned_cols=73 Identities=23% Similarity=0.367 Sum_probs=59.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+. .+++.+..+|+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~---------------~~~i~~~~~d~~~~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGL---------------AGNITFEVGDLESL 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCC---------------ccCcEEEEcCchhc
Confidence 35679999999999999999886 56799999999999999999876654 24799999994332
Q ss_pred ccCCCCceeEEEEC
Q 043334 109 CRDHDIQLERIVGC 122 (903)
Q Consensus 109 ~~~~~~~fD~Iv~N 122 (903)
.++||+|+++
T Consensus 125 ----~~~fD~v~~~ 134 (230)
T PRK07580 125 ----LGRFDTVVCL 134 (230)
T ss_pred ----cCCcCEEEEc
Confidence 2379999864
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=104.58 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=84.9
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccC
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLL 95 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~ 95 (903)
.++..|... . .++.++||+.||||.+++.+..+ +..+|+.+|.|+.+++..++|++..+.+
T Consensus 31 alFniL~~~-~--~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~~~l~~~--------------- 91 (183)
T PF03602_consen 31 ALFNILQPR-N--LEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNLEKLGLE--------------- 91 (183)
T ss_dssp HHHHHHHCH----HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHT-G---------------
T ss_pred HHHHHhccc-c--cCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHHhCCC---------------
Confidence 445555543 1 46899999999999999997665 4679999999999999999999888762
Q ss_pred CcEEEEEccccccccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 96 DRVEFHESDLLAYCRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 96 ~~v~~~~gDl~~~~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
+++.++.+|....... ...+||+|+.+|||..... +..+
T Consensus 92 ~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~--------------------------------------~~~~ 133 (183)
T PF03602_consen 92 DKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLY--------------------------------------YEEL 133 (183)
T ss_dssp GGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHH--------------------------------------HHHH
T ss_pred cceeeeccCHHHHHHhhcccCCCceEEEECCCcccchH--------------------------------------HHHH
Confidence 4699999997655421 2348999999999984210 1133
Q ss_pred HHHHh--hcccCCcEEEEEeCCC
Q 043334 173 VEEGI--GVIKPSGIMIFNMGGR 193 (903)
Q Consensus 173 l~~~~--~~LkpgG~ll~~~~~~ 193 (903)
++.+. .+|+++|.+++++...
T Consensus 134 l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 134 LELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHHCCCCCCCEEEEEEecCC
Confidence 44443 7899999999998765
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=109.46 Aligned_cols=198 Identities=13% Similarity=0.124 Sum_probs=141.7
Q ss_pred CCcHHHHHHHHHHHHcc-C-C--CCCchHHHHHHHHHHHhhcCCCCCCCCcE--EecCchHHHHHHHHHHhcc-------
Q 043334 628 PIPSLVKAAIFESFARQ-N-M--SESEIDVTPSIQQYIKSNFGFPIDINAEF--IYADCSQSLFNKLVLCCIL------- 694 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y-~-~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I--~vt~Gs~~al~~ll~~l~~------- 694 (903)
++.+.+.+.+...+.+. . + .....++.+.+.+++++.+|.+...+ ++ .+|+|++++...++.+...
T Consensus 52 ~~~p~~~~~~~~~l~~~~~np~s~~~~~~le~~~~~~la~llg~~~~~~-~~~g~~TsGgTEAn~~al~~ar~~~~~~~~ 130 (431)
T TIGR01788 52 WMEPEARKLMDETINKNMIDKDEYPQTAEIENRCVNMLADLWHAPAKDA-EAVGTSTIGSSEAIMLGGLAMKWRWRKRME 130 (431)
T ss_pred CCCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCCCCC-CCeEEEechHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777777777532 1 1 12234677888999999999862101 34 3489999998887755421
Q ss_pred -CC-----CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 695 -EG-----GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 695 -pG-----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
.| -.|+++.-.+.++..+++..|.++..+|+++ +++.+|+++|++++++++ .+|+++..| |.||.+-+
T Consensus 131 ~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~-~~~~vd~~~L~~~i~~~t-~lV~~t~g~-t~tG~idp--- 204 (431)
T TIGR01788 131 AAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDP-GRYVIDPEQVVEAVDENT-IGVVCILGT-TYTGEYED--- 204 (431)
T ss_pred hcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCC-CceeeCHHHHHHHHhhCC-eEEEEEeCC-CCCcccCC---
Confidence 12 3699999999999999999999999999976 456799999999998877 488899998 99999988
Q ss_pred HHHHHHHHHhC------CcEEEEecCCCCCc--cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceee
Q 043334 769 IENILTVCAKY------GARVVIDTAFSGLE--FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFG 839 (903)
Q Consensus 769 l~eI~~ia~k~------~i~VI~DeaY~~l~--f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG 839 (903)
+++|.++|+++ |+++.+|-+|++.. |.-.... +. +. .. .-..+.-|..|.+ +..| +|
T Consensus 205 i~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~-~~----~~-~~------~~DSis~s~HK~~~~P~g--~G 270 (431)
T TIGR01788 205 VKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLE-WD----FR-LP------RVKSINVSGHKYGLVYPG--VG 270 (431)
T ss_pred HHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCch-hh----cC-CC------CceEEEECchhccCCCCC--cE
Confidence 88888888999 99999999997432 2111110 00 11 11 2345778889965 5444 79
Q ss_pred EEEeCcH
Q 043334 840 FLVLNHP 846 (903)
Q Consensus 840 ~lv~~~~ 846 (903)
+++..+.
T Consensus 271 ~l~~r~~ 277 (431)
T TIGR01788 271 WVIWRDE 277 (431)
T ss_pred EEEEeCh
Confidence 8888765
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=104.69 Aligned_cols=129 Identities=19% Similarity=0.182 Sum_probs=96.6
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|||.|+|+|.++.+++... |..+|+..|+.++.++.|++|++.+|+ .+++++.+.|+.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl---------------~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL---------------DDNVTVHHRDVC 102 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC---------------CTTEEEEES-GG
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC---------------CCCceeEeccee
Confidence 3479999999999999999999876 456999999999999999999999987 368999999997
Q ss_pred ccccC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcc-cCC
Q 043334 107 AYCRD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI-KPS 183 (903)
Q Consensus 107 ~~~~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~L-kpg 183 (903)
+.-.. .+..+|.|+...|-- . ..+..+.+.| |+|
T Consensus 103 ~~g~~~~~~~~~DavfLDlp~P-----w--------------------------------------~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLDLPDP-----W--------------------------------------EAIPHAKRALKKPG 139 (247)
T ss_dssp CG--STT-TTSEEEEEEESSSG-----G--------------------------------------GGHHHHHHHE-EEE
T ss_pred cccccccccCcccEEEEeCCCH-----H--------------------------------------HHHHHHHHHHhcCC
Confidence 53221 124799998432211 0 3577888999 899
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 184 GIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 184 G~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
|++.+..+.-......-+.+++.||..++.+
T Consensus 140 G~i~~fsP~ieQv~~~~~~L~~~gf~~i~~~ 170 (247)
T PF08704_consen 140 GRICCFSPCIEQVQKTVEALREHGFTDIETV 170 (247)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHHHCCCeeeEEE
Confidence 9999988876555555678889999877653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-07 Score=99.00 Aligned_cols=212 Identities=14% Similarity=0.111 Sum_probs=147.0
Q ss_pred CCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..++++|+.++ ..+...|++.++-.+++.+|+. ..|.....+.++..+++.+|.+. .|+..++-. +.
T Consensus 66 ~k~ilnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED----~ilypscfd-AN 140 (417)
T KOG1359|consen 66 DKKILNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGRED----TILYPSCFD-AN 140 (417)
T ss_pred ccceeeecccccccccCChHHHHHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCc----eEEeccccc-cc
Confidence 34678877544 2244678999999999998864 35788888899999999877542 365555544 44
Q ss_pred HHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCccc
Q 043334 686 NKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV---KKPWVYISGPTINPTGL 762 (903)
Q Consensus 686 ~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPTG~ 762 (903)
..++.+++.|.|.|+-..-.+.+...-++.+. +. -..|+..++..+.+. +.++|+-..- -...|.
T Consensus 141 ag~feail~pedAvfSDeLNhASIIdGirLck-ry----------~h~dv~~l~~~l~~a~k~r~klv~TDg~-FSMDGd 208 (417)
T KOG1359|consen 141 AGAFEAILTPEDAVFSDELNHASIIDGIRLCK-RY----------RHVDVFDLEHCLISACKMRLKLVVTDGV-FSMDGD 208 (417)
T ss_pred hHHHHHhcChhhhhhccccccchhhhhhHHHh-hh----------ccchhHHHHHHHHHhhhheEEEEEecce-eccCCC
Confidence 44577889999999988888887776665544 11 114555565544321 2234444444 488899
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+.| +++|.++++|||.++++||+++-..|+.... .....+.-+. +..|..++++|.+| |---||..
T Consensus 209 iaP---l~ei~~La~kYgaLlfiDecHaTgf~G~tGr------Gt~E~~~vm~---~vdiinsTLgKAlG--ga~GGytt 274 (417)
T KOG1359|consen 209 IAP---LEEISQLAKKYGALLFIDECHATGFFGETGR------GTAEEFGVMG---DVDIINSTLGKALG--GASGGYTT 274 (417)
T ss_pred ccc---HHHHHHHHHhcCcEEEEeecccceeecCCCC------ChHHHhCCCC---cceehhhhhhhhhc--CCCCCCcc
Confidence 999 7888899999999999999998777765442 1122222222 47889999999997 34449999
Q ss_pred eCcHHHHHHHHhCCC
Q 043334 843 LNHPQLVDAFSSFPG 857 (903)
Q Consensus 843 ~~~~~li~~l~~~~~ 857 (903)
+|.+ +++-++....
T Consensus 275 gp~~-li~llrqr~R 288 (417)
T KOG1359|consen 275 GPKP-LISLLRQRSR 288 (417)
T ss_pred CChh-HHHHHHhcCC
Confidence 9998 9988886654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.8e-08 Score=121.02 Aligned_cols=177 Identities=14% Similarity=0.093 Sum_probs=138.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH----HHHHHHHHHhccC-CC----eEEEcCCCcHHHHHHHHHcC
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ----SLFNKLVLCCILE-GG----TLCFPAGSNGNYVSAARFLK 717 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~----~al~~ll~~l~~p-GD----~Vlv~~P~y~~~~~~~~~~G 717 (903)
.+|+.++...+++++++.+|. + +|.++++++ .++.+++.++.++ || .|+++...+......+...|
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~--~---~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G 637 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGF--D---SFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAMCG 637 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--C---eEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHHCC
Confidence 467888888899999999887 3 799999888 8888899999877 88 89999999999888888899
Q ss_pred CEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCcc
Q 043334 718 ANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794 (903)
Q Consensus 718 ~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f 794 (903)
.+++.+++++ +..+|+++|++++++ ++ ++|++++|+ |-+|...+ +++|.++|+++|+.+++|-+...-..
T Consensus 638 ~~vv~v~~d~--~G~vDle~L~~~i~~~~~~t-a~V~vt~pS-n~gg~e~~---I~eI~~iah~~Galv~vDgAq~~a~~ 710 (993)
T PLN02414 638 MKIVVVGTDA--KGNINIEELRKAAEAHKDNL-AALMVTYPS-THGVYEEG---IDEICDIIHDNGGQVYMDGANMNAQV 710 (993)
T ss_pred CEEEEeccCC--CCCcCHHHHHHHHhccCCCe-EEEEEECCC-ccccccch---HHHHHHHHHHcCCEEEEEecCHHhcc
Confidence 9999999974 336999999999985 34 589999998 99988865 89999999999999999998732000
Q ss_pred CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc----cccceeeEEEeCcHHHHHHH
Q 043334 795 NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML----TGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 795 ~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g----~~GlRiG~lv~~~~~li~~l 852 (903)
+. ...... +-.++++|.-|+|+ ..|=-+|++.+... +...+
T Consensus 711 -~l-----------~~p~~~----GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~-L~p~l 755 (993)
T PLN02414 711 -GL-----------TSPGFI----GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH-LAPFL 755 (993)
T ss_pred -Cc-----------CCcccc----CCCEEEecCCccCCcCcccCCCCeeeEEEchh-hcccC
Confidence 00 000111 35788888999775 22334788888765 55443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.7e-09 Score=106.95 Aligned_cols=129 Identities=19% Similarity=0.359 Sum_probs=91.4
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc-
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR- 110 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~- 110 (903)
+++||+|||||..+..+-.. ..+.+|+|||+.|++.|.++-- |+ .+.+.|+..+..
T Consensus 127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eKg~-----------YD----------~L~~Aea~~Fl~~ 183 (287)
T COG4976 127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEKGL-----------YD----------TLYVAEAVLFLED 183 (287)
T ss_pred ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhccc-----------hH----------HHHHHHHHHHhhh
Confidence 68999999999999998776 5799999999999999987531 11 234555544443
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
..+.+||+|++- +-..| ++.+..++-.+...|+|||.|.|.+
T Consensus 184 ~~~er~DLi~Aa------DVl~Y--------------------------------lG~Le~~~~~aa~~L~~gGlfaFSv 225 (287)
T COG4976 184 LTQERFDLIVAA------DVLPY--------------------------------LGALEGLFAGAAGLLAPGGLFAFSV 225 (287)
T ss_pred ccCCcccchhhh------hHHHh--------------------------------hcchhhHHHHHHHhcCCCceEEEEe
Confidence 223489999731 11111 1223477889999999999999944
Q ss_pred CC---------------CCcHHHHHHHHHHCCCeEEEEEehhhhcc
Q 043334 191 GG---------------RPGQGVCKRLFERRGFRVDKLWQTKILQA 221 (903)
Q Consensus 191 ~~---------------~~~~~~l~~ll~~~gf~~~~~~~~~~~~~ 221 (903)
.. -..+..++.+++..||.++.+.+..+.+.
T Consensus 226 E~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d 271 (287)
T COG4976 226 ETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD 271 (287)
T ss_pred cccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccchhh
Confidence 31 12456778899999999999876665544
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-07 Score=105.12 Aligned_cols=206 Identities=15% Similarity=0.192 Sum_probs=150.4
Q ss_pred CCcHHHHHHHHHHHHccC----CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC--------
Q 043334 628 PIPSLVKAAIFESFARQN----MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE-------- 695 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~----~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p-------- 695 (903)
.+++...+.+...+.+.. ...+...+-+.+..++.+.++.+... .=.+|+|++++..+.+.+..+.
T Consensus 73 ~~~~~a~~~~~~~~~~nl~d~~~~p~a~~~E~~~v~~l~~l~~~~~~~--~G~~t~GgTean~lal~aar~~~~~~~~~~ 150 (460)
T COG0076 73 RVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA--SGTFTSGGTEANLLALLAARERWRKRALAE 150 (460)
T ss_pred CCHHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCCC--ceEEEcChHHHHHHHHHHHHHHHHHHhhhc
Confidence 345566666666665421 23356677788999999999987442 4678888888877666554211
Q ss_pred CC------eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCc-EEEEECCCCCCcccCCCHHH
Q 043334 696 GG------TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKP-WVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 696 GD------~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~-~vil~~P~~NPTG~v~s~ee 768 (903)
+. .|+++.-.+..+..++.++|.....++++.. ++.+|++++++++++.+.. +|+-+-++ -|||.+ +.
T Consensus 151 ~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~aGt-T~~G~i---Dd 225 (460)
T COG0076 151 SGKPGGKPNIVCSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGTAGT-TDTGSI---DD 225 (460)
T ss_pred ccccCCCCeEEecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEEecC-CCCCcc---CC
Confidence 11 6999999999999999999999999999874 6889999999999988753 27777787 899988 56
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCc--cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLE--FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~--f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+++|.++|+++++++.+|-+|+++. |..... .....++ .-.-+.-++-|. |.+=.-+||++..++
T Consensus 226 i~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~------~~~f~l~------~vdSIt~d~HK~-g~aP~~~G~il~rd~ 292 (460)
T COG0076 226 IEELADIAEEYGIWLHVDAAFGGFLLPFLEPDG------RWDFGLE------GVDSITVDGHKY-GLAPIGCGVVLFRDE 292 (460)
T ss_pred HHHHHHHHHHcCCcEEEEccccceeecccCccc------hhhcCCC------CceEEEECcccc-cCCCCCceEEEEECH
Confidence 9999999999999999999998754 333321 0011121 134466788995 466777999999987
Q ss_pred -HHHHHHH
Q 043334 847 -QLVDAFS 853 (903)
Q Consensus 847 -~li~~l~ 853 (903)
.+.+.+.
T Consensus 293 e~l~~~~~ 300 (460)
T COG0076 293 EALRRILI 300 (460)
T ss_pred HHhhhhhh
Confidence 3555444
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-07 Score=111.83 Aligned_cols=173 Identities=12% Similarity=0.085 Sum_probs=124.1
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH-HHHcCCEEEEecCCCCCCcc
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA-ARFLKANIVNIPTESEVGFK 732 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-~~~~G~~vv~v~~~~~~~f~ 732 (903)
..+..+..++.||.+.+ .+++||++.++..++.+++.+||.|+++..++-+.... +.+.|+++++++... +.|.
T Consensus 176 i~eAq~~AA~~fgAd~t----yFlvNGTS~gn~a~i~a~~~~Gd~VLvdRN~HKSv~hgaLiLsGa~PVYl~P~~-n~~G 250 (720)
T PRK13578 176 AKDAQKHAAKVFNADKT----YFVLNGTSASNKVVTNALLTPGDLVLFDRNNHKSNHHGALIQAGATPVYLETAR-NPFG 250 (720)
T ss_pred HHHHHHHHHHHhCCCce----EEEeCChhHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHHcCCeEEEeeccc-cccC
Confidence 34566777788888755 99999999999999999999999999999999998885 899999999997654 3333
Q ss_pred ----cCH-----HHHHHHhhcC--------C-CcEEEEECCCCCCcccCCCHHHHHHHHHH-HHhCCcEEEEecCCCC-C
Q 043334 733 ----MTE-----KTLVTILETV--------K-KPWVYISGPTINPTGLLYSNKEIENILTV-CAKYGARVVIDTAFSG-L 792 (903)
Q Consensus 733 ----ld~-----~~L~~~l~~~--------~-~~~vil~~P~~NPTG~v~s~eel~eI~~i-a~k~~i~VI~DeaY~~-l 792 (903)
+++ +.+++++.+. + .++++|++|+ --|.++. +++|++. ++.++ .|++||+|.. +
T Consensus 251 i~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT--YdG~~yd---i~~I~~~~~h~~~-~llvDEAhgah~ 324 (720)
T PRK13578 251 FIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT--YDGTIYN---ARQVVDKIGHLCD-YILFDSAWVGYE 324 (720)
T ss_pred CcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC--Ccceeec---HHHHHHHhhccCC-cEEEeCcchhhh
Confidence 354 4488877654 1 2589999996 8899998 6777777 56777 8999999964 3
Q ss_pred ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee-EEEeCc
Q 043334 793 EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNH 845 (903)
Q Consensus 793 ~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~ 845 (903)
.|.+.-. .++.+...+... +-.++++.|.-|.+ +|+--+ ++...+
T Consensus 325 ~F~p~~~---~~p~~al~~GaD---~p~i~v~QStHKtL--~alTQaS~LHvk~ 370 (720)
T PRK13578 325 QFIPMMA---DCSPLLLELNEN---DPGIFVTQSVHKQQ--AGFSQTSQIHKKD 370 (720)
T ss_pred ccCcccc---cCChhhhhcCCC---CCCeEEEEChhhcc--hhhhhHhhhhcCC
Confidence 4543210 011111111111 12579999999987 466655 555543
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=113.25 Aligned_cols=100 Identities=23% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||++||+|.+++.++...+..+|+++|+|+.+++.+++|++.|++ ++++++++|+..+..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~----------------~~~~v~~~Da~~~l~ 121 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL----------------ENEKVFNKDANALLH 121 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----------------CceEEEhhhHHHHHh
Confidence 3689999999999999999887656999999999999999999999987 367899999987654
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. ..+||+|+.||| - .+ ..+++.+.+.+++||.+++.
T Consensus 122 ~-~~~fD~V~lDP~-G-s~----------------------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 122 E-ERKFDVVDIDPF-G-SP----------------------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred h-cCCCCEEEECCC-C-Cc----------------------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 2 237999999986 1 11 04567777888999999996
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=111.77 Aligned_cols=81 Identities=23% Similarity=0.297 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.+++++..++. .++++++++|+.+.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~---------------~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPL---------------ASKLEVIEGDALKT 97 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCC---------------CCcEEEEECCHhhh
Confidence 35789999999999999999987 57899999999999999999876553 25899999999886
Q ss_pred ccCCCCceeEEEECCCCCCCC
Q 043334 109 CRDHDIQLERIVGCIPQILNP 129 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~ 129 (903)
... .||.|++|+||....
T Consensus 98 ~~~---~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 98 EFP---YFDVCVANVPYQISS 115 (294)
T ss_pred ccc---ccCEEEecCCcccCc
Confidence 432 689999999998544
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.4e-08 Score=106.87 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=84.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+.++||++|||.|..+..+++..+..+|+.+|+|+++++.|++.+...+. .--.+|++++.+|..++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~------------~~~dpRv~vi~~Da~~~l 158 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV------------GFDDPRVNLHIGDGVEFL 158 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc------------ccCCCceEEEEChHHHHH
Confidence 57899999999999999998763346999999999999999998743211 001358999999998775
Q ss_pred cCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... +++||+|+++.+--..+ .... ....+++.+.+.|+|||+++.
T Consensus 159 ~~~~~~~yDvIi~D~~dp~~~-----~~~L-----------------------------~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 159 KNAPEGTYDAIIVDSSDPVGP-----AQEL-----------------------------FEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hhccCCCCCEEEEcCCCCCCc-----hhhh-----------------------------hHHHHHHHHHHhcCCCcEEEE
Confidence 432 34899999753211100 0000 123789999999999999988
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
..++
T Consensus 205 q~~s 208 (308)
T PLN02366 205 QAES 208 (308)
T ss_pred CcCC
Confidence 6554
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-08 Score=101.91 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=94.8
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc-
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR- 110 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~- 110 (903)
..+||||||.|.+.+.+|+..|+..++|+|+....+..|..++...++ +|+.++++|+.....
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l----------------~Nv~~~~~da~~~l~~ 82 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL----------------KNVRFLRGDARELLRR 82 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT----------------SSEEEEES-CTTHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc----------------cceEEEEccHHHHHhh
Confidence 389999999999999999999999999999999999999999988887 699999999877421
Q ss_pred -CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 111 -DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 111 -~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
...+++|.|.-|-|- | ...-.+.-+ .+. -..+++...+.|+|||.+.+.
T Consensus 83 ~~~~~~v~~i~i~FPD---P-WpK~rH~kr---------------Rl~-----------~~~fl~~~~~~L~~gG~l~~~ 132 (195)
T PF02390_consen 83 LFPPGSVDRIYINFPD---P-WPKKRHHKR---------------RLV-----------NPEFLELLARVLKPGGELYFA 132 (195)
T ss_dssp HSTTTSEEEEEEES---------SGGGGGG---------------STT-----------SHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCchheEEEeCCC---C-Ccccchhhh---------------hcC-----------CchHHHHHHHHcCCCCEEEEE
Confidence 112489999755221 1 011000000 011 127899999999999999998
Q ss_pred eCCCCcHHHHHHHHHH--CCCeEEE
Q 043334 190 MGGRPGQGVCKRLFER--RGFRVDK 212 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~--~gf~~~~ 212 (903)
+....-.....+.+.+ .+|+...
T Consensus 133 TD~~~y~~~~~~~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 133 TDVEEYAEWMLEQFEESHPGFENIE 157 (195)
T ss_dssp ES-HHHHHHHHHHHHHHSTTEEEE-
T ss_pred eCCHHHHHHHHHHHHhcCcCeEEcc
Confidence 8776555555667777 3677653
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=109.77 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=65.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++.. . ++++++++|+.+..
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~--~----------------~~v~ii~~D~~~~~ 88 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA--A----------------GNVEIIEGDALKVD 88 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc--C----------------CCEEEEEeccccCC
Confidence 5689999999999999999998 56999999999999999988732 1 47999999998864
Q ss_pred cCCCCceeEEEECCCCCCC
Q 043334 110 RDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~ 128 (903)
.+ .||.|++||||...
T Consensus 89 ~~---~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 89 LP---EFNKVVSNLPYQIS 104 (258)
T ss_pred ch---hceEEEEcCCcccC
Confidence 33 58999999999853
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-07 Score=110.17 Aligned_cols=165 Identities=11% Similarity=0.115 Sum_probs=121.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcc-
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFK- 732 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~- 732 (903)
..+..+..++.||.+.+ .++++|++.++..++.+++.+||.|+++..++-+....+...|+++++++... +.|.
T Consensus 197 i~eAe~~AA~~fgAd~t----yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~haLilsga~PVYl~P~r-n~~Gi 271 (714)
T PRK15400 197 HKEAEEYIARVFNADRS----YMVTNGTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDVTPIYFRPTR-NAYGI 271 (714)
T ss_pred HHHHHHHHHHHhCCCcE----EEEeCchHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeEEEecccc-cccCC
Confidence 35566777788887755 99999999999999999999999999999999999999999999999997654 3332
Q ss_pred ---cC-----HHHHHHHhhcCC----CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-ccCCCCC
Q 043334 733 ---MT-----EKTLVTILETVK----KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGL-EFNYEGW 799 (903)
Q Consensus 733 ---ld-----~~~L~~~l~~~~----~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~f~~~~~ 799 (903)
++ ++.+++.+.... +..++|++|+ --|.+++ +++|++.|..++ |++||+|... .|.+.-
T Consensus 272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pT--YdG~~yd---~~~I~~~~~~~~--ilvDEAwgah~~F~p~~- 343 (714)
T PRK15400 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNST--YDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIY- 343 (714)
T ss_pred ccCCCccccCHHHHHHHHHhCccccCccEEEEECCC--CccEecC---HHHHHHHhCCCC--EEEEccchhhhccCccc-
Confidence 34 788988886532 1269999996 7899998 667777777777 6789999643 444321
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
...+.+.. +.+ +++.++++.|.-|++ +|+.-+
T Consensus 344 ---~~~sam~~--ga~-~~~~i~vtQStHKtL--~alTQa 375 (714)
T PRK15400 344 ---EGKCGMSG--GRV-EGKVIYETQSTHKLL--AAFSQA 375 (714)
T ss_pred ---CCcChhhc--CCC-CCCceEEEEchhhcc--cchhHH
Confidence 10111221 111 124679999999987 465544
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-08 Score=108.76 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+|+|+|++|++.++++... ++++++++|+.+..
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~-------------------~~v~~i~~D~~~~~ 100 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE-------------------DNLTIIEGDALKVD 100 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc-------------------CceEEEEChhhcCC
Confidence 56899999999999999999984 4999999999999999887621 37999999999875
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
.+.. .+|.||+||||..
T Consensus 101 ~~~~-~~~~vv~NlPY~i 117 (272)
T PRK00274 101 LSEL-QPLKVVANLPYNI 117 (272)
T ss_pred HHHc-CcceEEEeCCccc
Confidence 4321 1599999999984
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=95.25 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=93.3
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 15 FTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 15 ~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
..++.+|... ..+|.++||+.+|||.+++..+.+ +..+++.+|.|..++...++|++..++
T Consensus 31 EalFNil~~~---~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~~~l~~--------------- 91 (187)
T COG0742 31 EALFNILAPD---EIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENLKALGL--------------- 91 (187)
T ss_pred HHHHHhcccc---ccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHHHHhCC---------------
Confidence 3555666542 246899999999999999997765 477999999999999999999988775
Q ss_pred CCcEEEEEccccccccCCCC--ceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 95 LDRVEFHESDLLAYCRDHDI--QLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~~~~~--~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
..++.++.+|.......... .||+|+..|||-.. ....... -.
T Consensus 92 ~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~----l~~~~~~-------------------------------~~ 136 (187)
T COG0742 92 EGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG----LLDKELA-------------------------------LL 136 (187)
T ss_pred ccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc----hhhHHHH-------------------------------HH
Confidence 25899999999866433332 49999999999821 1110000 11
Q ss_pred HHHHhhcccCCcEEEEEeCCCC
Q 043334 173 VEEGIGVIKPSGIMIFNMGGRP 194 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~~~~ 194 (903)
.-.-..+|+|+|.+++++....
T Consensus 137 ~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 137 LLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HHHhcCCcCCCcEEEEEeCCCc
Confidence 2224577999999999988653
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.8e-08 Score=101.61 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=79.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchh-hh-cccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA-EK-KTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~-~~-~~~~~~v~~~~gDl~~ 107 (903)
++.+||+.|||.|..+..||.. |.+|+|+|+|+.+|+.+.+. ++++. .+... .. ..-..+++++++|+++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e---~~~~~---~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQ---NTINY---EVIHGNDYKLYKGDDIEIYVADIFN 114 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHH---cCCCc---ceecccccceeccCceEEEEccCcC
Confidence 4679999999999999999998 88999999999999998652 22210 00000 00 0113579999999999
Q ss_pred ccc--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YCR--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
+.. ...++||+|+- ......++... -.+..+.+.+.|+|||.
T Consensus 115 l~~~~~~~~~fD~VyD------ra~~~Alpp~~------------------------------R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 115 LPKIANNLPVFDIWYD------RGAYIALPNDL------------------------------RTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred CCccccccCCcCeeee------ehhHhcCCHHH------------------------------HHHHHHHHHHHhCCCcE
Confidence 854 22347999861 12222222222 33779999999999998
Q ss_pred EEE
Q 043334 186 MIF 188 (903)
Q Consensus 186 ll~ 188 (903)
+++
T Consensus 159 lll 161 (226)
T PRK13256 159 ILL 161 (226)
T ss_pred EEE
Confidence 887
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.9e-07 Score=97.20 Aligned_cols=212 Identities=16% Similarity=0.094 Sum_probs=148.1
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cC---C---CCC----chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QN---M---SES----EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~---~---~~G----~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.|.|=.++|. +++.+++++-..+.. |. + -+| .........+..++.||.+.. ++-..+|+++
T Consensus 26 ~~~ieLIASEN~--~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~LFga~~a---nVQPhSGs~A 100 (413)
T COG0112 26 REHIELIASENF--TSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKLFGAEYA---NVQPHSGSQA 100 (413)
T ss_pred hhceeeeecccc--CCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHHhCCCcc---ccCCCCchHH
Confidence 367888777775 567788887766643 21 1 122 233444556667788999877 7888999998
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHH---HHcC--CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAA---RFLK--ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~---~~~G--~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
.+.. +.++++|||+|+-.+-.++++...- ...| .+++.++++.+ +..+|.|++++...+.+++ ++++.-+.-
T Consensus 101 N~av-~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~e-t~~IDyD~~~k~a~e~kPK-~ii~G~SaY 177 (413)
T COG0112 101 NQAV-YLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPE-TGLIDYDEVEKLAKEVKPK-LIIAGGSAY 177 (413)
T ss_pred HHHH-HHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccc-cCccCHHHHHHHHHHhCCC-EEEECcccc
Confidence 8875 7889999999998888777765543 1122 47788888864 4679999999998877654 445443312
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
| ..++ ++++.++|.+-|.++++|-++- +|+-.|...+ . ++ ...|+.+|..|++ +|=|
T Consensus 178 ~--r~id---~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~------P---~~------~AdvVTtTTHKTl--rGPr 235 (413)
T COG0112 178 S--RPID---FKRFREIADEVGAYLMVDMAHVAGLIAGGVHPN------P---LP------HADVVTTTTHKTL--RGPR 235 (413)
T ss_pred c--cccC---HHHHHHHHHHhCceEEehHHHHHHHHhcccCCC------C---CC------ccceEeCCcccCC--CCCC
Confidence 2 2344 7777778888899999999883 3444444321 0 11 2468999999998 5889
Q ss_pred eeEEEeCcHHHHHHHHhCC
Q 043334 838 FGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~~ 856 (903)
-|.|.+.++++.+++.+..
T Consensus 236 GG~Il~~~eel~kkin~aV 254 (413)
T COG0112 236 GGIILTNDEELAKKINSAV 254 (413)
T ss_pred ceEEEeccHHHHHHhhhhc
Confidence 9999999866999998743
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.6e-08 Score=99.19 Aligned_cols=108 Identities=20% Similarity=0.132 Sum_probs=79.6
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEE-EEEcccccccc
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVE-FHESDLLAYCR 110 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~-~~~gDl~~~~~ 110 (903)
..|||+|||||..=... ..-|+.+|+++|.++.|-+.|.+.++.+. ..+++ |+.++..+++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k----------------~~~~~~fvva~ge~l~~ 140 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKK----------------PLQVERFVVADGENLPQ 140 (252)
T ss_pred cceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhcc----------------CcceEEEEeechhcCcc
Confidence 46899999999764332 22256799999999999999999987664 25677 99999999874
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
-.++++|+||+-...+ + ..+ ..+.+++..++|+|||+++|..
T Consensus 141 l~d~s~DtVV~TlvLC--S--------------------------ve~----------~~k~L~e~~rlLRpgG~iifiE 182 (252)
T KOG4300|consen 141 LADGSYDTVVCTLVLC--S--------------------------VED----------PVKQLNEVRRLLRPGGRIIFIE 182 (252)
T ss_pred cccCCeeeEEEEEEEe--c--------------------------cCC----------HHHHHHHHHHhcCCCcEEEEEe
Confidence 4556999998531111 1 111 2278999999999999999965
Q ss_pred CCCC
Q 043334 191 GGRP 194 (903)
Q Consensus 191 ~~~~ 194 (903)
+...
T Consensus 183 Hva~ 186 (252)
T KOG4300|consen 183 HVAG 186 (252)
T ss_pred cccc
Confidence 5443
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-08 Score=101.62 Aligned_cols=136 Identities=18% Similarity=0.207 Sum_probs=104.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|.+|||-++|-|+.++..+++ ++.+|+-++.||..+++|.-|-...++. ..+++++.||..+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~--------------~~~i~iilGD~~e~ 197 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELF--------------EIAIKIILGDAYEV 197 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCcccc--------------ccccEEecccHHHH
Confidence 47899999999999999998887 2449999999999999999887666552 34689999999887
Q ss_pred ccCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...- +.+||+||-.||=+.....- | -..|.++.+|+|||||.++
T Consensus 198 V~~~~D~sfDaIiHDPPRfS~AgeL---------------Y--------------------seefY~El~RiLkrgGrlF 242 (287)
T COG2521 198 VKDFDDESFDAIIHDPPRFSLAGEL---------------Y--------------------SEEFYRELYRILKRGGRLF 242 (287)
T ss_pred HhcCCccccceEeeCCCccchhhhH---------------h--------------------HHHHHHHHHHHcCcCCcEE
Confidence 5432 34799999888877432200 0 1278899999999999999
Q ss_pred EEeCCCC-------cHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGGRP-------GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~~~-------~~~~l~~ll~~~gf~~~~~~ 214 (903)
-.++... -+.-+.+.|++.||..+...
T Consensus 243 HYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 243 HYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred EEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 8666422 23344578999999977664
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.3e-08 Score=97.21 Aligned_cols=128 Identities=12% Similarity=0.161 Sum_probs=88.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+..-|||||||||..+..+... +...+|+|||+.|++.|.+.-. .-.++.+||-+..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~---------------------egdlil~DMG~Gl 106 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVEREL---------------------EGDLILCDMGEGL 106 (270)
T ss_pred CCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhh---------------------hcCeeeeecCCCC
Confidence 5678999999999998888765 6899999999999999986321 1347889998877
Q ss_pred cCCCCceeEEEEC--CCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RDHDIQLERIVGC--IPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~~~~fD~Iv~N--pPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+...+.||.+|+- .-|.-+.+.. .+....-+.+||...+.+|++|++.+
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~~s-----------------------------~~~P~~Rl~~FF~tLy~~l~rg~raV 157 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNADKS-----------------------------LHVPKKRLLRFFGTLYSCLKRGARAV 157 (270)
T ss_pred CCCCCccceEEEeeeeeeecccCcc-----------------------------ccChHHHHHHHhhhhhhhhccCceeE
Confidence 7667799988741 2222111111 11222234588999999999999999
Q ss_pred EEeCCCCcH--HHHHHHHHHCCCe
Q 043334 188 FNMGGRPGQ--GVCKRLFERRGFR 209 (903)
Q Consensus 188 ~~~~~~~~~--~~l~~ll~~~gf~ 209 (903)
+..-..... +.+..-...+||.
T Consensus 158 ~QfYpen~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 158 LQFYPENEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred EEecccchHHHHHHHHHHHhhccC
Confidence 976544322 2333444556764
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-07 Score=101.41 Aligned_cols=191 Identities=10% Similarity=0.098 Sum_probs=124.9
Q ss_pred CCCcHHHHHHHHHHHHccC-CCC-----C-----chHHHHHHHHHHHhhcCCCCCCCCcEEecCc-hHHHHHHHHHHhcc
Q 043334 627 LPIPSLVKAAIFESFARQN-MSE-----S-----EIDVTPSIQQYIKSNFGFPIDINAEFIYADC-SQSLFNKLVLCCIL 694 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~-~~~-----G-----~~~lr~ala~~l~~~~G~~~~pe~~I~vt~G-s~~al~~ll~~l~~ 694 (903)
.+.|+.+++++.+.+..++ ..+ + ..+..+.+++.+++.+|.+. ++ +|++|+| ++++++.++..++.
T Consensus 8 ~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~-~~-~vvf~~gs~T~a~~~~~~~l~~ 85 (355)
T cd00611 8 AALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPD-NY-KVLFLQGGATGQFAAVPLNLLG 85 (355)
T ss_pred CCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCC-Cc-eEEEEcCCchHHHHHHHHhcCC
Confidence 3578899999988875432 111 1 12455677888888888743 23 7999988 99999999999987
Q ss_pred ---CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccC-HHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 695 ---EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT-EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 695 ---pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld-~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+||.|++ .|........++..|++++.++.+...++ .+ ++..+..+++++ ++|.+++-. |.||..++
T Consensus 86 ~~~~~~~i~~-g~~~~~~~~~a~~~g~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~-~lV~~~h~~-t~tG~~~~----- 156 (355)
T cd00611 86 DKGTADYVVT-GAWSAKAAKEAKRYGGVVVIVAAKEEGKY-TKIPDVETWDLAPDA-AYVHYCSNE-TIHGVEFD----- 156 (355)
T ss_pred CCCeEEEEEC-CHHHHHHHHHHHhcCCCcEEEecccccCC-CCCCCHhhcCCCCCC-CEEEEeCCc-ccccEEcc-----
Confidence 5555544 33222334477888999999988643223 13 233333345555 588888887 99999743
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
++++.+|+++++|-+-+ ++..+. + ++.. . +.+.|--|.+|.+| +|+++++++ +.+
T Consensus 157 ---~i~~~~g~~~~VDa~qs---~g~~~i---d-------v~~~-----~-~~~ss~~K~lGP~G--~g~l~~~~~-~~~ 211 (355)
T cd00611 157 ---EVPDTGGVPLVADMSSN---ILSRPI---D-------VSKF-----G-VIYAGAQKNLGPAG--VTVVIVRKD-LLG 211 (355)
T ss_pred ---eecccCCCeEEEEcccc---ccCCCC---C-------HHHh-----C-EEEeecccccCCCc--eEEEEECHH-HHh
Confidence 34456999999999863 222221 1 1111 2 45566789999777 799999887 665
Q ss_pred HHH
Q 043334 851 AFS 853 (903)
Q Consensus 851 ~l~ 853 (903)
++.
T Consensus 212 ~~~ 214 (355)
T cd00611 212 KAR 214 (355)
T ss_pred hcc
Confidence 544
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-08 Score=98.99 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=59.9
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
..|+|+.||.|..++.+|+. ..+|+++|+|+..++.|+.|+...|. .++++++++|+.+....
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv---------------~~~I~~i~gD~~~~~~~ 63 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGV---------------ADNIDFICGDFFELLKR 63 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT----------------GGGEEEEES-HHHHGGG
T ss_pred CEEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEeCCHHHHHhh
Confidence 36999999999999999998 46899999999999999999999887 36899999999988644
Q ss_pred CC-Cc-eeEEEECCCCCC
Q 043334 112 HD-IQ-LERIVGCIPQIL 127 (903)
Q Consensus 112 ~~-~~-fD~Iv~NpPy~~ 127 (903)
.. .. +|+|+.+|||--
T Consensus 64 ~~~~~~~D~vFlSPPWGG 81 (163)
T PF09445_consen 64 LKSNKIFDVVFLSPPWGG 81 (163)
T ss_dssp B------SEEEE---BSS
T ss_pred ccccccccEEEECCCCCC
Confidence 31 12 899999999983
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-06 Score=98.51 Aligned_cols=245 Identities=9% Similarity=0.053 Sum_probs=146.0
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCC--C-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSE--S-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~--G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..|. ..++ ..+.+.+++.+.+.+..... + ..+....+++.+.+..+... .+ .++++++++++
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~-~~-~v~f~~SGsEA 127 (441)
T PRK05769 50 DVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGF-EK-KVFFTNSGTES 127 (441)
T ss_pred eCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCC-CC-EEEECCchHHH
Confidence 35677899987663 3344 46778888888876532211 1 24556778888877543211 12 79999999998
Q ss_pred HHHHHHHhcc-CC-CeEEEcCCCcHHHHHH-HHHcCC-------------EEEEecCCCC--CCcc-c--------CHHH
Q 043334 685 FNKLVLCCIL-EG-GTLCFPAGSNGNYVSA-ARFLKA-------------NIVNIPTESE--VGFK-M--------TEKT 737 (903)
Q Consensus 685 l~~ll~~l~~-pG-D~Vlv~~P~y~~~~~~-~~~~G~-------------~vv~v~~~~~--~~f~-l--------d~~~ 737 (903)
...++..... .| .+|+...-+|-+.... ....|. .+..++.... ..|+ - +.+.
T Consensus 128 ~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (441)
T PRK05769 128 NEAAIKIARYHTGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDF 207 (441)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHH
Confidence 8877764321 23 4677767666554332 222221 1222322110 0011 0 1233
Q ss_pred HHH-Hhh----cCCCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 738 LVT-ILE----TVKKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 738 L~~-~l~----~~~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
+++ .++ ... .+.++.-|-+.-.|.. .+.+.+++|.++|++||+++|.||++.++...+... . ...+
T Consensus 208 le~~~~~~~~~~~~-iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~---a----~~~~ 279 (441)
T PRK05769 208 IEDYLFKKLVPPEE-VAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMF---A----IEHF 279 (441)
T ss_pred HHHHHHhhccCCCc-eEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccccee---h----hhcc
Confidence 555 222 223 3566666764555664 467889999999999999999999998754444321 1 1111
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC-CCCCcHHHHHHHHHHHh
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG-LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~ 874 (903)
.-.| | ++ +|||.++ .|+++|+++++++ +.+.+..... +.+.+++++.++.+.|+
T Consensus 280 gv~p---D-iv---t~~K~l~-~G~p~gav~~~~~-i~~~~~~~~~~T~~g~p~~~aaa~a~L~ 334 (441)
T PRK05769 280 GVEP---D-II---TLAKAIA-GGLPLGAVIGRAE-LMFLPPGSHANTFGGNPVAAAAALATLE 334 (441)
T ss_pred CCCC---C-EE---EEccccc-CCcccEEEEEehh-hhhcCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 1112 1 22 5899998 7899999999877 7654332222 55667888888888884
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.9e-08 Score=98.78 Aligned_cols=75 Identities=17% Similarity=0.264 Sum_probs=57.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. +.+++|+|+++++++.++++ +++++++|+.+..
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~-----------------------~~~~~~~d~~~~l 68 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVAR-----------------------GVNVIQGDLDEGL 68 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHc-----------------------CCeEEEEEhhhcc
Confidence 56799999999999999988753 56899999999999988632 3667888886532
Q ss_pred -cCCCCceeEEEECCCCCCC
Q 043334 110 -RDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 110 -~~~~~~fD~Iv~NpPy~~~ 128 (903)
....++||+|++|.++...
T Consensus 69 ~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 69 EAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred cccCCCCcCEEEEhhHhHcC
Confidence 1223489999988665433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=116.50 Aligned_cols=83 Identities=23% Similarity=0.292 Sum_probs=69.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC------------------------------------------CCEEEEEeCCHHHH
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL------------------------------------------PSKVYGLDINPRAI 67 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~------------------------------------------~~~V~giDis~~al 67 (903)
++..++|.+||+|.+.+..|.... ..+++|+|+++.|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 568999999999999999876411 13699999999999
Q ss_pred HHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCC-CCceeEEEECCCCCC
Q 043334 68 RISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDH-DIQLERIVGCIPQIL 127 (903)
Q Consensus 68 ~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~-~~~fD~Iv~NpPy~~ 127 (903)
+.|++|+..+|++ +++++.++|+.+..... .++||+||+||||..
T Consensus 270 ~~A~~N~~~~g~~---------------~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 270 QAARKNARRAGVA---------------ELITFEVKDVADLKNPLPKGPTGLVISNPPYGE 315 (702)
T ss_pred HHHHHHHHHcCCC---------------cceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence 9999999999883 57999999998875432 236999999999985
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=105.31 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=91.6
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCC--------------------------------C-------EEEEEeCCHHHHH
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLP--------------------------------S-------KVYGLDINPRAIR 68 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~--------------------------------~-------~V~giDis~~al~ 68 (903)
+.++..++|.-||+|.+.+..|...++ + .++|+|+|+.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 345679999999999999998887531 1 3789999999999
Q ss_pred HHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhh
Q 043334 69 ISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLY 148 (903)
Q Consensus 69 ~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~ 148 (903)
.|+.|+...|+ .+.|+|.++|+..+..+. ..+|+|||||||-..-..
T Consensus 269 ~Ak~NA~~AGv---------------~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRlg~----------------- 315 (381)
T COG0116 269 GAKANARAAGV---------------GDLIEFKQADATDLKEPL-EEYGVVISNPPYGERLGS----------------- 315 (381)
T ss_pred HHHHHHHhcCC---------------CceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhcCC-----------------
Confidence 99999999988 378999999999886663 389999999999832110
Q ss_pred hccccccccccccccccH-HHHHHHHHHHhhcccCCcEEEEEeCC
Q 043334 149 SLSNYCALQGFVEDQFGL-GLIARAVEEGIGVIKPSGIMIFNMGG 192 (903)
Q Consensus 149 ~l~~~~al~~~v~~~~g~-~~~~~~l~~~~~~LkpgG~ll~~~~~ 192 (903)
.... .+|..+.+.+.+.++.-+..+|....
T Consensus 316 --------------~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 316 --------------EALVAKLYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred --------------hhhHHHHHHHHHHHHHHHhcCCceEEEEccH
Confidence 0111 25667788888888877887776543
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.7e-07 Score=97.82 Aligned_cols=185 Identities=11% Similarity=0.074 Sum_probs=116.5
Q ss_pred CCCchHH-HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEE-cCCCcHHHHHHH----------H
Q 043334 647 SESEIDV-TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCF-PAGSNGNYVSAA----------R 714 (903)
Q Consensus 647 ~~G~~~l-r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv-~~P~y~~~~~~~----------~ 714 (903)
.+|+.+. |+.+.+-+++.+|.+..-= +.-+ ..++++|..++..++.|||+++. ...=|......+ +
T Consensus 48 GYGY~D~GRd~le~iyA~vfgaE~ALV-Rpq~-vSGTHAi~~~Lfg~LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~ 125 (403)
T PF06838_consen 48 GYGYDDIGRDKLERIYADVFGAEDALV-RPQF-VSGTHAIALALFGVLRPGDELLSITGKPYDTLEEVIGIRGNGPGSLK 125 (403)
T ss_dssp TT-TT-HHHHHHHHHHHHHCT-SEEEE-ETTS--SHHHHHHHHHHHH--TT-EEEESSSS--CCHHHHHTSSSSSSSSTG
T ss_pred cCCCCCccHHHHHHHHHHHhCchhhhh-cccc-cchHHHHHHHHHhcCCCCCeEEEcCCCchhhHHHHhCCCCCCCCChH
Confidence 4666665 9999999999999863200 1112 25578899999999999999884 444466666555 5
Q ss_pred HcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCCC
Q 043334 715 FLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSGL 792 (903)
Q Consensus 715 ~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~l 792 (903)
-+|.+...+++.+++ .+|.+.+++++++++ ++|+|--..---+=..++.+++++++++.++ .++++.+|++|.++
T Consensus 126 e~Gi~Y~~v~L~~dg--~~D~~~i~~~~~~~t-k~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNCYGEF 202 (403)
T PF06838_consen 126 EFGIKYREVPLTEDG--TIDWEAIKKALKPNT-KMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNCYGEF 202 (403)
T ss_dssp GGT-EEEE--B-TTS--SB-HHHHHHHHHTTE-EEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-TTTTT
T ss_pred HhCceeEEEeecCCC--CcCHHHHHHhhccCc-eEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCCccee
Confidence 568899999998644 599999999999877 4777754431122234677899999999886 48999999999876
Q ss_pred ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce--eeEEEeCcHHHHHHHHhC
Q 043334 793 EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK--FGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 793 ~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR--iG~lv~~~~~li~~l~~~ 855 (903)
+=..++. +. +-.++.+||=|.-| .|+= -||+++..+ +++.....
T Consensus 203 vE~~EP~-------------~v----GADl~aGSLIKNpG-GgiAptGGYIaGr~~-lVe~~a~R 248 (403)
T PF06838_consen 203 VETQEPT-------------EV----GADLMAGSLIKNPG-GGIAPTGGYIAGRKD-LVERAAYR 248 (403)
T ss_dssp TSSS-GG-------------GG----T-SEEEEETTSGGG-TTT-SS-EEEEESHH-HHHHHHHH
T ss_pred ccccCcc-------------cc----chhheeccceeCCC-CCccCcCCEEechHH-HHHHHHhh
Confidence 6444331 11 25789999999987 3332 279999987 99877653
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.9e-08 Score=101.97 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=84.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+.++|||+||++|+-++.+|...+ +.+|+.+|.+++..+.|++++...|+ .++++++.||..+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~---------------~~~I~~~~G~a~e~ 143 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV---------------AHKIDFREGPALPV 143 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC---------------CCceEEEeccHHHH
Confidence 357999999999999999998764 56999999999999999999998887 37899999999886
Q ss_pred ccCC------CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 109 CRDH------DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 109 ~~~~------~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
.... .++||+|+ +..+ ...|...++.+.+.|+|
T Consensus 144 L~~l~~~~~~~~~fD~iF-----iDad------------------------------------K~~Y~~y~~~~l~ll~~ 182 (247)
T PLN02589 144 LDQMIEDGKYHGTFDFIF-----VDAD------------------------------------KDNYINYHKRLIDLVKV 182 (247)
T ss_pred HHHHHhccccCCcccEEE-----ecCC------------------------------------HHHhHHHHHHHHHhcCC
Confidence 4331 24899998 2111 11234678888999999
Q ss_pred CcEEEEE
Q 043334 183 SGIMIFN 189 (903)
Q Consensus 183 gG~ll~~ 189 (903)
||.++++
T Consensus 183 GGviv~D 189 (247)
T PLN02589 183 GGVIGYD 189 (247)
T ss_pred CeEEEEc
Confidence 9999984
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.7e-06 Score=97.03 Aligned_cols=245 Identities=11% Similarity=0.052 Sum_probs=147.7
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS--ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~--~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...|...+|+..| ...++ .+|.+.+++.+.+.+.... +-..+.+..+++.+.+......+ .++++++++++.
T Consensus 71 D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~---~v~f~~SGsEA~ 147 (442)
T TIGR03372 71 DTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLK---YSFFCNSGTESV 147 (442)
T ss_pred ECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcC---EEEEeCCchHHH
Confidence 3567888998766 44455 5678888888887653321 22345566777777765432222 788999999988
Q ss_pred HHHHHHhcc----CC-CeEEEcCCCcHHHHHHHHHc-CCEEE---EecCCCCCC--cccCHHHHHHHhhc----CCCcEE
Q 043334 686 NKLVLCCIL----EG-GTLCFPAGSNGNYVSAARFL-KANIV---NIPTESEVG--FKMTEKTLVTILET----VKKPWV 750 (903)
Q Consensus 686 ~~ll~~l~~----pG-D~Vlv~~P~y~~~~~~~~~~-G~~vv---~v~~~~~~~--f~ld~~~L~~~l~~----~~~~~v 750 (903)
..++..... .| ..|+....+|-+....+... |-... ..|+.+.-. -..|.+.+++.++. ....+.
T Consensus 148 e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAa 227 (442)
T TIGR03372 148 EAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAA 227 (442)
T ss_pred HHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 877764422 23 46777777766543333222 21100 111111000 01356777666642 122355
Q ss_pred EEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+|.-|-+.--|... +.+.++++.++|++||+++|.||+..++-=.|.. |. .....-.| .|+ +|+|
T Consensus 228 vIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~---~a----~e~~gv~P-----Div--t~gK 293 (442)
T TIGR03372 228 IILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKM---FA----CEHEGVQP-----DIL--CLAK 293 (442)
T ss_pred EEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccc---hh----hhhcCCCC-----Cee--eehh
Confidence 56666645556655 6888999999999999999999999653212221 11 11122222 222 4899
Q ss_pred hccccc-ceeeEEEeCcHHHHHHHHhC----CCCCCCcHHHHHHHHHHHh
Q 043334 830 KMLTGA-LKFGFLVLNHPQLVDAFSSF----PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 830 ~~g~~G-lRiG~lv~~~~~li~~l~~~----~~~~~~s~~~Q~aa~~~L~ 874 (903)
.+| .| +.+|.+++.++ +.+.+..- ..+.+.++.+-.++.+.|+
T Consensus 294 ~lg-~G~~Pigavv~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~ 341 (442)
T TIGR03372 294 ALG-GGVMPIGATIATEA-VFSVLFDNPFLHTTTFGGNPLACAAALATIN 341 (442)
T ss_pred hhc-CCcccceEEEecHH-HHHhhhccCccccCCCCCCHHHHHHHHHHHH
Confidence 997 67 68999998876 88887422 1255567777777777774
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.8e-06 Score=99.11 Aligned_cols=205 Identities=10% Similarity=0.060 Sum_probs=130.0
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC------CCC----chHHHHHHHHHHHhhcCCCCCC-CCcEEecCchH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM------SES----EIDVTPSIQQYIKSNFGFPIDI-NAEFIYADCSQ 682 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~------~~G----~~~lr~ala~~l~~~~G~~~~p-e~~I~vt~Gs~ 682 (903)
...|+|=.++|. +++.+++++...+.. |.. .+| ..++.....+...+.||.++.. .-+|-.-+|+.
T Consensus 148 ~~~l~LIASEN~--~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~SGs~ 225 (586)
T PLN02271 148 FKGIELIASENF--VCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPYSCTS 225 (586)
T ss_pred hcCeeecccccc--CCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeeccHHH
Confidence 456777777765 467777776665543 221 112 2233344455566667866520 01577777777
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHH---------HHcCC--EEEEecCCCCCCcccCHHHHHHHhhcCCCcEEE
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAA---------RFLKA--NIVNIPTESEVGFKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~---------~~~G~--~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vi 751 (903)
+.+. ++.++++|||+|+..+..++++.... ...|. ++++++++++ +..+|.+++++......+++|+
T Consensus 226 AN~a-V~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~-~g~IDyd~lek~a~~~rPKLII 303 (586)
T PLN02271 226 ANFA-VYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQ-TGYIDYDKLEEKALDFRPKILI 303 (586)
T ss_pred HHHH-HHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccc-cCccCHHHHHHHhhhcCCeEEE
Confidence 6665 57888999999999888887765543 33454 4555556543 4569999999854433334666
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+..-. || ..++ ++++.++|+++|+++++|-++..-...+..++ . -++ ...++.+|..|++
T Consensus 304 ~g~Sa-yp--r~~D---~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~-----s---P~~------~aDvvt~TTHKtL 363 (586)
T PLN02271 304 CGGSS-YP--REWD---YARFRQIADKCGAVLMCDMAHISGLVAAKECV-----N---PFD------YCDIVTSTTHKSL 363 (586)
T ss_pred ECchh-cc--CcCC---HHHHHHHHHHcCCEEEEECcccccccccCcCC-----C---CCc------CCcEEEeCCcccC
Confidence 65555 88 5566 67778888999999999999853222221110 0 011 2468999999988
Q ss_pred ccccceeeEEEeCc
Q 043334 832 LTGALKFGFLVLNH 845 (903)
Q Consensus 832 g~~GlRiG~lv~~~ 845 (903)
.|=|-|.+...+
T Consensus 364 --rGPrGG~I~~r~ 375 (586)
T PLN02271 364 --RGPRGGIIFYRK 375 (586)
T ss_pred --CCCCceEEEecc
Confidence 466779888864
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=100.99 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=90.2
Q ss_pred ccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhcccccCCCC
Q 043334 8 FIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP--SKVYGLDINPRAIRISWINLYLNALDEKGQP 85 (903)
Q Consensus 8 fiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~--~~V~giDis~~al~~A~~n~~~~gl~~~~~~ 85 (903)
|--|.|...=+..|....+.. ..+||++|||.|.....+.+..++ .+|+++|.||.+++..+++...+
T Consensus 51 fkdR~wL~~Efpel~~~~~~~--~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~-------- 120 (264)
T KOG2361|consen 51 FKDRNWLLREFPELLPVDEKS--AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD-------- 120 (264)
T ss_pred cchhHHHHHhhHHhhCccccC--hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--------
Confidence 444688887666666655421 228999999999999999888776 79999999999999999886433
Q ss_pred cchhhhcccCCcEEEEEcccccccc---CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccc
Q 043334 86 IYDAEKKTLLDRVEFHESDLLAYCR---DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVED 162 (903)
Q Consensus 86 ~~~~~~~~~~~~v~~~~gDl~~~~~---~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~ 162 (903)
..++...+.|+..... ...+++|.|+.- |... +
T Consensus 121 ---------e~~~~afv~Dlt~~~~~~~~~~~svD~it~I--FvLS-----------A---------------------- 156 (264)
T KOG2361|consen 121 ---------ESRVEAFVWDLTSPSLKEPPEEGSVDIITLI--FVLS-----------A---------------------- 156 (264)
T ss_pred ---------hhhhcccceeccchhccCCCCcCccceEEEE--EEEe-----------c----------------------
Confidence 2467777777765531 123589988631 1100 0
Q ss_pred cccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 163 QFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 163 ~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
-+.+-..+.++.+.++|||||.++|.
T Consensus 157 -i~pek~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 157 -IHPEKMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred -cChHHHHHHHHHHHHHhCCCcEEEEe
Confidence 11223458899999999999999993
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-06 Score=104.67 Aligned_cols=189 Identities=12% Similarity=0.131 Sum_probs=128.2
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcc-
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFK- 732 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~- 732 (903)
.....+..++.||.+.+ .++++|++.++..++.+++.|||.|+++..++-+....+...|+++++++... +.|.
T Consensus 197 i~eAe~~aA~~fgAd~t----yfvvNGTS~~n~av~~a~~~~Gd~VLvdRN~HKSv~~aLilsga~PVYl~P~~-n~~Gi 271 (713)
T PRK15399 197 HLEAEEYIARTFGAEQS----YIVTNGTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPIWLKPTR-NALGI 271 (713)
T ss_pred HHHHHHHHHHHhCCCcE----EEEeCChHHHHHHHHHHhcCCCCEEEeecccHHHHHHHHHHcCCeeEEecccc-cccCC
Confidence 44566777788888655 99999999999999999999999999999999999999999999999997653 2332
Q ss_pred ---cCH-----HHHHHHhhcCC----CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE-EEecCCCC-CccCCCC
Q 043334 733 ---MTE-----KTLVTILETVK----KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV-VIDTAFSG-LEFNYEG 798 (903)
Q Consensus 733 ---ld~-----~~L~~~l~~~~----~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V-I~DeaY~~-l~f~~~~ 798 (903)
+++ +.+++.+.+.. ++.+++++|+ --|.+++ +++|++.| |+.+ ++||+|.. +.|.+..
T Consensus 272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pT--YdGi~yd---~~~I~~~~---g~~~ilvDEAhgah~~F~p~~ 343 (713)
T PRK15399 272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNST--YDGLLYN---TDWIKQTL---DVPSIHFDSAWVPYTHFHPIY 343 (713)
T ss_pred cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCC--CCceeeC---HHHHHHHh---CCCEEEEeccchhhhhcCccc
Confidence 344 88888886532 2489999996 8899999 55566666 4555 69999964 2344311
Q ss_pred CCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee-EEEeCc----HHHHHHHHhCCCCCCCcHHH
Q 043334 799 WGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNH----PQLVDAFSSFPGLSKPHSTV 865 (903)
Q Consensus 799 ~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~----~~li~~l~~~~~~~~~s~~~ 865 (903)
...+.+...++. +-.++++.|.-|++ +|+.-+ ++.... +.+.+++. +.++++|+.+.
T Consensus 344 ----~~~sam~~~~~a---D~~i~~tQStHKtL--~alTQaS~iHvk~~vd~~~~n~a~~-m~~STSPsY~L 405 (713)
T PRK15399 344 ----QGKSGMSGERVP---GKVIFETQSTHKML--AAFSQASLIHIKGEYDEETFNEAFM-MHTSTSPSYPI 405 (713)
T ss_pred ----CCcChhhCCCCC---Ceeeeeeeehhccc--cccchheeeeecCCCCHHHHHHHHH-HHcCCCcHHHH
Confidence 100112211111 12456799999987 566655 555533 21333333 33355555544
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-06 Score=97.04 Aligned_cols=187 Identities=12% Similarity=0.114 Sum_probs=130.3
Q ss_pred CcHHHHHHHHHHHHccCC--------CCCch---HHHHHHHHHHHhhcCCCCCCCCcEEecCc-hHHHHHHHHHHhccCC
Q 043334 629 IPSLVKAAIFESFARQNM--------SESEI---DVTPSIQQYIKSNFGFPIDINAEFIYADC-SQSLFNKLVLCCILEG 696 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~--------~~G~~---~lr~ala~~l~~~~G~~~~pe~~I~vt~G-s~~al~~ll~~l~~pG 696 (903)
.|..+++++.+.+..+.. ..-.+ ++.+.+.+.+++.++.+.+ .+|++++| ++.++..++..++.+|
T Consensus 3 ~p~~v~~~~~~~~~~~~~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~--~~v~~~~gsgT~a~ea~~~nl~~~~ 80 (349)
T TIGR01364 3 LPEEVLEQAQKELLNFNGTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDN--YEVLFLQGGATGQFAAVPLNLLAEG 80 (349)
T ss_pred CCHHHHHHHHHHHhCccCCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCC--ceEEEEcCCchHHHHHHHHhcCCCC
Confidence 577888888888765431 11123 5567788888888886433 26888877 9999999999999999
Q ss_pred CeEEEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCc--ccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 697 GTLCFPAGSNGN--YVSAARFLKANIVNIPTESEVGF--KMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 697 D~Vlv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f--~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
|++++..-+..+ +...++..|+ +..+..++..+| .++++.++ ++++. ++|.+++-. |.||...+
T Consensus 81 ~~~l~i~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~v~~th~E-TstGv~~~------- 148 (349)
T TIGR01364 81 KVADYIVTGAWSKKAAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDA-AYVHYCANE-TIHGVEFR------- 148 (349)
T ss_pred CeEEEEECCHHHHHHHHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCC-CEEEEcCCC-CcccEecc-------
Confidence 998877766554 4567788898 777775422212 24556555 23333 588888887 99999875
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
++++.+++++|+|-+-+ +.+.+. + +++. + +++.|--|.+|.|| +|+++++++ +++++
T Consensus 149 -~l~~~~~~l~iVDavss---~g~~~i---d-------~~~~----d--~~~~ssqK~lgP~G--lg~l~~s~~-~~~~~ 205 (349)
T TIGR01364 149 -ELPDVKNAPLVADMSSN---ILSRPI---D-------VSKF----G--LIYAGAQKNIGPAG--LTVVIVRKD-LLGRA 205 (349)
T ss_pred -eecccCCCeEEEEcccc---ccCccC---C-------HHHc----c--EEEEecccccCCCc--eEEEEECHH-HHhhc
Confidence 55667899999999763 222221 1 1121 2 78899999999888 799999987 66554
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=103.61 Aligned_cols=124 Identities=26% Similarity=0.324 Sum_probs=96.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..+|.+|+|+.||.|.+++.+|+.. ..+|+++|+||.+++..++|+++|+++ +++..++||..+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~---------------~~v~~i~gD~re 249 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVE---------------GRVEPILGDARE 249 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCcc---------------ceeeEEeccHHH
Confidence 3469999999999999999999874 334999999999999999999999983 569999999999
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.+... +.+|-|+.|.|... + .++..+.+.+++||++.
T Consensus 250 v~~~~-~~aDrIim~~p~~a-----------~-------------------------------~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 250 VAPEL-GVADRIIMGLPKSA-----------H-------------------------------EFLPLALELLKDGGIIH 286 (341)
T ss_pred hhhcc-ccCCEEEeCCCCcc-----------h-------------------------------hhHHHHHHHhhcCcEEE
Confidence 87663 38999998765531 0 56778888899999988
Q ss_pred EEeCCCCc------HHHHHHHHHHCCCeE
Q 043334 188 FNMGGRPG------QGVCKRLFERRGFRV 210 (903)
Q Consensus 188 ~~~~~~~~------~~~l~~ll~~~gf~~ 210 (903)
+....... ...++......|++.
T Consensus 287 yy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 287 YYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred EEeccchhhcccchHHHHHHHHhhccCcc
Confidence 84443222 244455566666533
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.2e-06 Score=96.81 Aligned_cols=265 Identities=11% Similarity=0.080 Sum_probs=158.2
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..|. ..++ .++.+.+++.+.+.+........+....+++.+.+.... . + .+.++++++++...
T Consensus 95 D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~lAe~l~~~~p~-~--~-~v~f~~SGsEA~e~ 170 (474)
T PLN02482 95 DVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVIDAVPS-V--E-MVRFVNSGTEACMG 170 (474)
T ss_pred ECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCC-C--C-EEEEeCChHHHHHH
Confidence 45678889986554 3333 567899999888876433222345566777877775432 2 3 79999999998887
Q ss_pred HHHHhcc-CC-CeEEEcCCCcHHHHHH-HHHc--CCEEE------EecCCC-C----CCcccCHHHHHHHhhcC-CCcEE
Q 043334 688 LVLCCIL-EG-GTLCFPAGSNGNYVSA-ARFL--KANIV------NIPTES-E----VGFKMTEKTLVTILETV-KKPWV 750 (903)
Q Consensus 688 ll~~l~~-pG-D~Vlv~~P~y~~~~~~-~~~~--G~~vv------~v~~~~-~----~~f~ld~~~L~~~l~~~-~~~~v 750 (903)
++..... .| .+|+...-+|-+.... .... |.... .+|... . -.| -|++.+++.+... ...+.
T Consensus 171 AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~~~iAa 249 (474)
T PLN02482 171 VLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-NDLEAVKKLFEANKGEIAA 249 (474)
T ss_pred HHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-CChHHHHHHHHhCCCceEE
Confidence 7765421 23 4677766666553321 1111 10000 000000 0 011 1688888887642 22356
Q ss_pred EEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+|.-|-+.-.|.+.+ .+.+++|.++|++||+++|.||+..++ -.+... ....++-.| . +.+|+|
T Consensus 250 vI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~~g-------a~~~~gv~P-----D--i~t~gK 314 (474)
T PLN02482 250 VILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAYGG-------AQEYFGITP-----D--LTTLGK 314 (474)
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCcch-------HhHHhCCCC-----C--EEEecc
Confidence 677777566676655 788999999999999999999999765 222221 111122222 1 247899
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhC----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSF----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.+| .|+.+|.+++.++ +++.+... . .+.+.+++.-.++.+.|+.-.. +++.+.+.++-+.++++.+
T Consensus 315 ~lg-gG~Pigav~g~~e-i~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~--~~~~~~~~~~g~~l~~~L~ 385 (474)
T PLN02482 315 VIG-GGLPVGAYGGRRE-IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ--PGTYEYLDKITKKLIQGIL 385 (474)
T ss_pred hhh-CCCceEEEEEcHH-HHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHH
Confidence 998 7899999988877 88887532 1 2445566776677777742211 2234455555555554443
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.3e-06 Score=104.51 Aligned_cols=214 Identities=12% Similarity=0.043 Sum_probs=136.5
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccC--CCC----C--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQN--MSE----S--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~----G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
++.|+.+...+.++..+.+++......+. +.. + ..+..+..++.+++.+|.+.. +-+|++|+|++++++++
T Consensus 35 ~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga~~~-~~~VvFtsnaT~alnlv 113 (805)
T PLN02724 35 VVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNAPPS-DYACVFTSGATAALKLV 113 (805)
T ss_pred CEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCCCcc-ceEEEEeCChHHHHHHH
Confidence 78888876665555566666555543321 111 1 234567778888888887543 11589999999999999
Q ss_pred HHHh-ccCCCeEEEcCCCcHHHHH---HHHHcCCEEEEecCCCC------CCcccC--HHHHHHHhh----------cCC
Q 043334 689 VLCC-ILEGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESE------VGFKMT--EKTLVTILE----------TVK 746 (903)
Q Consensus 689 l~~l-~~pGD~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~~~~------~~f~ld--~~~L~~~l~----------~~~ 746 (903)
...+ +++||+|+++.-.|.+... .++..|+++..++++.+ +...++ .+++++.++ +++
T Consensus 114 a~~l~~~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t 193 (805)
T PLN02724 114 GETFPWSSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAY 193 (805)
T ss_pred HHHCCCCCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCc
Confidence 8887 6789999998777765443 34556999999987621 111233 255665531 223
Q ss_pred CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC-----CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 747 KPWVYISGPTINPTGLLYSNKEIENILTVCAKY-----GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~-----~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
++|.++.-+ |-||.+++.+.+.++.+.+..+ ++++++|-+.+- +... ++ +... +..
T Consensus 194 -~LVa~~~vs-N~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~----g~~p--iD-------v~~~----~~D 254 (805)
T PLN02724 194 -NLFAFPSEC-NFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGC----GTSP--PD-------LSRY----PAD 254 (805)
T ss_pred -ceEEEEccc-cCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhc----CCCC--CC-------hhhc----CCC
Confidence 478888776 9999999976544444333222 367899987631 1110 11 1111 357
Q ss_pred EEEccCchhccc-ccceeeEEEeCcHHHHHHHH
Q 043334 822 SLLGGLSLKMLT-GALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 822 I~l~S~SK~~g~-~GlRiG~lv~~~~~li~~l~ 853 (903)
+++.|+-|.+|. .| +|++++.++ +.+.+.
T Consensus 255 fl~~S~HK~~GgP~G--~G~L~vr~~-~~~~l~ 284 (805)
T PLN02724 255 FVVVSFYKIFGYPTG--LGALLVRRD-AAKLLK 284 (805)
T ss_pred EEEEecceeccCCCC--ceEEEEehh-hhhhhc
Confidence 899999998873 35 799998876 665554
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-06 Score=95.79 Aligned_cols=240 Identities=14% Similarity=0.129 Sum_probs=142.9
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc-
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL- 694 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~- 694 (903)
-.|||=...-.-.+.+...++|.. ....+|..+--..+.+..++.+|.+. ++.|..+..+-..++..+++
T Consensus 42 V~IDLrSDTgT~apS~~m~aAM~~----GDD~Y~gdpSv~~Lee~vael~G~E~-----alpthqGRgaE~Il~~~~~~~ 112 (467)
T TIGR02617 42 VFIDLLTDSGTGAVTQSMQAAMMR----GDEAYSGSRSYYALAESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKK 112 (467)
T ss_pred eEEECccCCCCCCCCHHHHHHHHc----CCcccccCchHHHHHHHHHHHhCCce-----EEECCCCchHHHHHHHhhccc
Confidence 467776555443456667777665 22234333333456666677778763 45554446666667888888
Q ss_pred CCCeEEEcCC-------C-cHHHHHHHHHcCCEEEEecCCC------CC--CcccCHHHHHHHhhcC---CCcEEEEECC
Q 043334 695 EGGTLCFPAG-------S-NGNYVSAARFLKANIVNIPTES------EV--GFKMTEKTLVTILETV---KKPWVYISGP 755 (903)
Q Consensus 695 pGD~Vlv~~P-------~-y~~~~~~~~~~G~~vv~v~~~~------~~--~f~ld~~~L~~~l~~~---~~~~vil~~P 755 (903)
|||++.+..+ . |......+...|+.++.++.+. +. ..++|++++++++++. ....+...--
T Consensus 113 ~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt 192 (467)
T TIGR02617 113 REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT 192 (467)
T ss_pred ccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEE
Confidence 7887775443 2 3334567888999988875431 12 3468999999999852 2122222211
Q ss_pred CCCC-cccCCCHHHHHHHHHHHHhCCcEEEEecCCCC--Ccc--CC-CCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 756 TINP-TGLLYSNKEIENILTVCAKYGARVVIDTAFSG--LEF--NY-EGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 756 ~~NP-TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~--l~f--~~-~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+ |- -|.++|.+.++++.++|++||+.++.|-+--. -.| .. ......++......+-.. -..+.-|+||
T Consensus 193 ~-N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~-----aDsvt~slsK 266 (467)
T TIGR02617 193 C-NSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKY-----ADMLAMSAKK 266 (467)
T ss_pred E-ecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhcc-----CCEEEEEcCC
Confidence 2 33 47899999999999999999999999974310 011 00 011113333333222222 3457789999
Q ss_pred hcccc-cceeeEEEeCcH---HHHHHHHhCC-------CCCCCcHHHHHHHHHHH
Q 043334 830 KMLTG-ALKFGFLVLNHP---QLVDAFSSFP-------GLSKPHSTVRYAIKKLL 873 (903)
Q Consensus 830 ~~g~~-GlRiG~lv~~~~---~li~~l~~~~-------~~~~~s~~~Q~aa~~~L 873 (903)
.++.| | |+++++++ ++.++++... ++.+.+.--..+.+.-|
T Consensus 267 glgApvG---g~Lag~d~~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl 318 (467)
T TIGR02617 267 DAMVPMG---GLLCFKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGL 318 (467)
T ss_pred CCCCccc---ceEEecchhHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhh
Confidence 99877 5 68888887 4555555432 14455554444444445
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-06 Score=98.00 Aligned_cols=183 Identities=13% Similarity=0.067 Sum_probs=131.2
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTE 726 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~ 726 (903)
+..++...+.+|+++.+|.+.+.- .=++|+|++++....+.+-.+ +...+++++-++.++..+++.+|.+++.||++
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~-~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d 208 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEY-WGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRMECVKVDTL 208 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCC-eEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCCcceEeccC
Confidence 456778899999999999864311 246678888877666655433 33478999999999999999999999999996
Q ss_pred CCCCcccCHHHHHHHhhcCC-Cc-EEEEECCCCCCcccCCCHHHHHHHHHHHHhCCc-----EEEEecCCCCCcc--CCC
Q 043334 727 SEVGFKMTEKTLVTILETVK-KP-WVYISGPTINPTGLLYSNKEIENILTVCAKYGA-----RVVIDTAFSGLEF--NYE 797 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~-~~-~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i-----~VI~DeaY~~l~f--~~~ 797 (903)
+ ++.+|+++|++++.+.+ ++ +|+.+-++ -+||.+ +.+++|.++|+++|+ |+.+|-+|+++.. -..
T Consensus 209 ~--~g~mD~~aL~~aI~~d~~~P~iVvataGT-T~~GAi---Dpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~ 282 (470)
T PLN02263 209 V--SGEIDCADFKAKLLANKDKPAIINVNIGT-TVKGAV---DDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKR 282 (470)
T ss_pred C--CCcCcHHHHHHHHHhCCCCcEEEEEEecC-CCCcCC---CCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccc
Confidence 3 67899999999887543 23 45566676 899999 458999999999986 9999999987543 111
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
. +.+... . .-.-+.-+..|..+ .-+-+|.++..++ .++.+.
T Consensus 283 ~-------~~~df~-~-----~vDSIsvD~HK~l~-~P~~cgvll~R~~-~~~~~~ 323 (470)
T PLN02263 283 A-------PKVTFK-K-----PIGSVSVSGHKFVG-CPMPCGVQITRME-HINVLS 323 (470)
T ss_pred c-------cccCCC-c-----CccEEEECCccccC-CCcCEEEEEEehh-hHhhhc
Confidence 1 001100 0 12335667789664 6678898888876 555443
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-06 Score=94.94 Aligned_cols=265 Identities=12% Similarity=0.069 Sum_probs=163.2
Q ss_pred ccCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHc-cCCC-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 610 TETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFAR-QNMS-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 610 ~~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~-y~~~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...+|...|||..| .+.++ .+|.+.+++.+-..+ ...+ .-..+.+.++++.+.+..+ ..+ .++++|+++++
T Consensus 37 ~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~-~~d---~vff~NSGaEA 112 (404)
T COG4992 37 WDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSP-FAD---RVFFCNSGAEA 112 (404)
T ss_pred ECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCc-ccc---EEEEcCCcHHH
Confidence 34678889998654 45555 578888888886554 2222 2245668888888888655 333 89999999999
Q ss_pred HHHHHHHhcc----CC-CeEEEcCCCcHHHHHHHHHcCCEEEE----ecCCCC---CCcccCHHHHHHHhhcCCCcEEEE
Q 043334 685 FNKLVLCCIL----EG-GTLCFPAGSNGNYVSAARFLKANIVN----IPTESE---VGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 685 l~~ll~~l~~----pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~----v~~~~~---~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
...++..-.. ++ -+|+....+|-+-.-.+-..+.+..+ -|+.+. -.| =|++++++++++++ .+|++
T Consensus 113 ~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpf-nDi~al~~ai~~~t-aAviv 190 (404)
T COG4992 113 NEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPF-NDIEALEAAIDEDT-AAVIV 190 (404)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCC-CCHHHHHHHhccCe-EEEEE
Confidence 9988765422 22 25666555554322222112222110 122211 012 27899999999966 35555
Q ss_pred ECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
- |-|=-.|.+. +.+.++++-++|++||+++|.||+-.++--.|+-+ . .....-.| =+-++.|.+
T Consensus 191 E-PIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~f---A----~e~~gV~P-------DI~tlaK~L 255 (404)
T COG4992 191 E-PIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLF---A----YEHYGVEP-------DILTLAKAL 255 (404)
T ss_pred e-cccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHH---H----HHHhCCCC-------CEEEeeccc
Confidence 4 5456667655 45678999999999999999999997765444431 1 11122222 144678999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhC-C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSF-P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~-~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
| .|+.+|.+++.+. +.+.+.-- + ++.+.+++.-.++.+.|+.-.. +.+-+..++.-+.+.++.+
T Consensus 256 g-GG~PigA~la~~~-~~~~~~~G~HgSTfGGNpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~ 321 (404)
T COG4992 256 G-GGFPIGAMLATEE-IASAFTPGDHGSTFGGNPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLR 321 (404)
T ss_pred c-CCccceeeEEchh-hhhcCCCCcccCCCCcCHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHH
Confidence 8 7899999999844 55554432 2 3788888888888777742221 2333444444444444443
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=93.67 Aligned_cols=266 Identities=12% Similarity=0.087 Sum_probs=158.0
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..|. ..++ ..|.+.+++.+.+.+.....-..+....+++.+.+... .. + .++++++++++...
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~l~~~~p-~~--~-~v~f~~sGseA~e~ 124 (428)
T PRK12389 49 DVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVLYGTPTELEIEFAKMLKEAIP-SL--E-KVRFVNSGTEAVMT 124 (428)
T ss_pred eCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCccCCCCHHHHHHHHHHHHhCC-CC--c-EEEEeCCHHHHHHH
Confidence 35677889986553 3344 46778888888876532212233456667777766543 22 3 79999999998887
Q ss_pred HHHHhcc-CC-CeEEEcCCCcHHHH-HHHHHcCCEEEE--------ecCC-CCCCc---ccCHHHHHHHhhcC-CCcEEE
Q 043334 688 LVLCCIL-EG-GTLCFPAGSNGNYV-SAARFLKANIVN--------IPTE-SEVGF---KMTEKTLVTILETV-KKPWVY 751 (903)
Q Consensus 688 ll~~l~~-pG-D~Vlv~~P~y~~~~-~~~~~~G~~vv~--------v~~~-~~~~f---~ld~~~L~~~l~~~-~~~~vi 751 (903)
++..... .| ..|+...-+|-+.. ......|..... ++.. ..+.. ..|++.+++.+... ...+.+
T Consensus 125 AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaav 204 (428)
T PRK12389 125 TIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAV 204 (428)
T ss_pred HHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEE
Confidence 7764432 23 46776666665533 333322211110 0000 00000 12688888888632 123555
Q ss_pred EECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 752 ISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 752 l~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
+.-|-+.-.|.+. +.+.+++|.++|+++|+++|.||+..++-. +... ....++-.| | +-+++|.
T Consensus 205 i~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt-~~~~-------a~~~~gv~P---D----ivt~gK~ 269 (428)
T PRK12389 205 LVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRF-MYGG-------AQDLLGVEP---D----LTALGKI 269 (428)
T ss_pred EEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccccc-Ccch-------hhHHhCCCC---C----eeeechh
Confidence 6666656667654 688899999999999999999999976522 1110 011122222 1 2378999
Q ss_pred cccccceeeEEEeCcHHHHHHHHhC----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 831 MLTGALKFGFLVLNHPQLVDAFSSF----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~~li~~l~~~----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++ .|+.+|.++++++ +++.+... . .+.+.+++.-.++.+.|+.-.. +++.+.+.++-+.++++.+
T Consensus 270 lg-gG~Pi~av~~~~~-i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~ 339 (428)
T PRK12389 270 IG-GGLPIGAYGGRKD-IMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQ--EGVYEKLDRLGAMLEEGIL 339 (428)
T ss_pred hc-CCCceeEEeEHHH-HHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHH
Confidence 97 6899999988877 88887531 1 2556677777777777753222 2344555555555555444
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3e-06 Score=88.49 Aligned_cols=199 Identities=12% Similarity=0.130 Sum_probs=142.5
Q ss_pred CcHHHHHHHHHHHHccCC----CCC------chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCe
Q 043334 629 IPSLVKAAIFESFARQNM----SES------EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGT 698 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~----~~G------~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~ 698 (903)
.+++..+++.+--+.|+. ..| -|+.+.-+.+ ++++.|++ .+-+|+|+.++=..++.++|++||.
T Consensus 29 Lt~eArkal~E~gDGYSvCD~C~~Grldei~kPpI~~F~~d-laeFlg~D-----~~R~t~GARe~KfavMhal~~~gd~ 102 (382)
T COG1103 29 LTEEARKALLEWGDGYSVCDFCLEGRLDEITKPPIKDFLED-LAEFLGMD-----EVRVTAGAREAKFAVMHALCKEGDW 102 (382)
T ss_pred CCHHHHHHHHHhcCCcchhhhhccCccccccCCcHHHHHHH-HHHHhCCc-----eeeecccchhhHHHHHHHhccCCCE
Confidence 456666666665443322 012 1333443333 66666764 5778999999999999999999999
Q ss_pred EEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 699 LCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 699 Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
|++....+...--++..+|.++..+|-.....|.++++...+.+.+ ..+.+.++++|. |..=...+-+++
T Consensus 103 vV~D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~D----g~YGNl~Dakkv 178 (382)
T COG1103 103 VVVDSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVD----GEYGNLADAKKV 178 (382)
T ss_pred EEEcCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccC----CCcCCchhhHHH
Confidence 9999998888778899999999999976556789999877666543 223477888777 444444668999
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
+++|+++++.++..-+|..-. -+. + ..+. +..++++|=.|+++ +.-.+|.+....+ +.+.+
T Consensus 179 a~ic~e~gvPlllN~AYt~Gr---mpv---s-------~ke~----g~DFiVgSGHKsmA-As~PiGvl~~~eE-~ae~V 239 (382)
T COG1103 179 AKICREYGVPLLLNCAYTVGR---MPV---S-------GKEI----GADFIVGSGHKSMA-ASAPIGVLAMSEE-WAEIV 239 (382)
T ss_pred HHHHHHcCCceEeecceeecc---ccc---c-------cccc----CCCEEEecCccchh-ccCCeeEEeehhH-HHHHH
Confidence 999999999999999994211 110 1 0111 35789999999997 4558999998877 77776
Q ss_pred HhCC
Q 043334 853 SSFP 856 (903)
Q Consensus 853 ~~~~ 856 (903)
.+..
T Consensus 240 ~r~S 243 (382)
T COG1103 240 LRRS 243 (382)
T ss_pred Hhhc
Confidence 5543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.1e-07 Score=105.64 Aligned_cols=124 Identities=20% Similarity=0.329 Sum_probs=98.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.++||+-||.|.+++.+|+. ..+|+|+|+++++++.|++|++.|++ +|++|..+|..+..
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i----------------~N~~f~~~~ae~~~ 354 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGI----------------DNVEFIAGDAEEFT 354 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCC----------------CcEEEEeCCHHHHh
Confidence 4578999999999999999976 68999999999999999999999998 47999999998886
Q ss_pred cCC--CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RDH--DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... ...+|.|+-+||=.-.+. .+++.+ ..++|..+++
T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~~~----------------------------------------~~lk~l-~~~~p~~IvY 393 (432)
T COG2265 355 PAWWEGYKPDVVVVDPPRAGADR----------------------------------------EVLKQL-AKLKPKRIVY 393 (432)
T ss_pred hhccccCCCCEEEECCCCCCCCH----------------------------------------HHHHHH-HhcCCCcEEE
Confidence 553 247899998877653221 233333 4467889999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.++.......+ ..|.+.||++.++
T Consensus 394 VSCNP~TlaRDl-~~L~~~gy~i~~v 418 (432)
T COG2265 394 VSCNPATLARDL-AILASTGYEIERV 418 (432)
T ss_pred EeCCHHHHHHHH-HHHHhCCeEEEEE
Confidence 998876666654 5778889887665
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.1e-06 Score=95.35 Aligned_cols=264 Identities=12% Similarity=0.094 Sum_probs=154.3
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..|. ..++ ..+.+.+++.+.+.......-..+....+++.+.+..+... + .+.++++++++...
T Consensus 49 D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~la~~L~~~~~~~~--~-~v~f~~SGsEA~e~ 125 (433)
T PRK00615 49 DSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTSYGLTSEQEILFAEELFSYLGLED--H-KIRFVSSGTEATMT 125 (433)
T ss_pred ECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCCCCc--C-EEEEeCchHHHHHH
Confidence 35678899997663 3344 57888888888876533221223445667777776554322 2 78999988988887
Q ss_pred HHHHhcc-CC-CeEEEcCCCcHHHHH----HHHHcCCEE----EEe--cCCCCC----CcccCHHHHHHHhhcC-CCcEE
Q 043334 688 LVLCCIL-EG-GTLCFPAGSNGNYVS----AARFLKANI----VNI--PTESEV----GFKMTEKTLVTILETV-KKPWV 750 (903)
Q Consensus 688 ll~~l~~-pG-D~Vlv~~P~y~~~~~----~~~~~G~~v----v~v--~~~~~~----~f~ld~~~L~~~l~~~-~~~~v 750 (903)
++..... .| ..|+...-+|-+... .....+... ... +..... .+ -|.+.+++.+... ...+.
T Consensus 126 AiklAr~~tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~aa 204 (433)
T PRK00615 126 AVRLARGITGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPY-NDFQIFQTVMNSLGHRVAG 204 (433)
T ss_pred HHHHHHHhhCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCC-CCHHHHHHHHHhcCCceEE
Confidence 7765432 23 467766666655321 111111000 000 000000 11 2678888887532 22356
Q ss_pred EEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+|.-|-+.-.|... +.+.+++|.++|++||+++|.||++.++- .|... .....+-.| .|+ +|||
T Consensus 205 vI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R-~G~~g-------a~~~~gv~P-----Di~--~~gK 269 (433)
T PRK00615 205 VIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFR-VAQGG-------AAAIYHVKP-----DIT--VYGK 269 (433)
T ss_pred EEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccccc-ccHhH-------HHHhcCCCC-----CeE--EEcc
Confidence 66667645556655 57889999999999999999999997662 23221 112222222 222 4899
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFP-----GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESR 897 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~-----~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~R 897 (903)
.+| .|+.+|+++++++ +++.+.... .+.+.++..-.++.+.|+.-.. +.+.+.+.++-+.++++
T Consensus 270 ~lg-gG~p~~av~~~~~-i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~--~~~~~~~~~~g~~l~~~ 338 (433)
T PRK00615 270 ILG-GGLPAAAVVAHKS-IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE--QGFYTQLSTLEQNFLSP 338 (433)
T ss_pred ccc-CCcceeeeeecHH-HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Confidence 997 6788999999887 888875321 2445567777777777753221 12344444444445444
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=101.74 Aligned_cols=79 Identities=24% Similarity=0.352 Sum_probs=67.1
Q ss_pred CCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcc
Q 043334 25 PDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 25 ~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
....++++.|||+|||||.+++..|+.. ..+|+|+|.|.-+ +.|++.+..|+++ +.+++++|.
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~---------------~ii~vi~gk 117 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLE---------------DVITVIKGK 117 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCcc---------------ceEEEeecc
Confidence 3336899999999999999999988874 7799999998754 9999999999983 579999999
Q ss_pred ccccccCCCCceeEEEE
Q 043334 105 LLAYCRDHDIQLERIVG 121 (903)
Q Consensus 105 l~~~~~~~~~~fD~Iv~ 121 (903)
+.+...+ ..++|+||+
T Consensus 118 vEdi~LP-~eKVDiIvS 133 (346)
T KOG1499|consen 118 VEDIELP-VEKVDIIVS 133 (346)
T ss_pred eEEEecC-ccceeEEee
Confidence 9888655 348999984
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=93.90 Aligned_cols=268 Identities=12% Similarity=0.071 Sum_probs=158.0
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC-C-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM-S-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~-~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...|...+|+..| ...++ .++.+.+++.+.+.+... + .-..+.+..+++.+.+......+ .++++++++++.
T Consensus 78 D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~---~v~f~~SGsEAv 154 (459)
T PRK11522 78 DTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLK---YSFFCNSGTESV 154 (459)
T ss_pred ECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCCchHHH
Confidence 3467788898766 44444 577888998888765322 1 22355667778877775432222 799999999988
Q ss_pred HHHHHHhcc----CC-CeEEEcCCCcHHHHHHH-HHcCCEEEE---ecCCCC---CCcccCHHHHHHHhhc----CCCcE
Q 043334 686 NKLVLCCIL----EG-GTLCFPAGSNGNYVSAA-RFLKANIVN---IPTESE---VGFKMTEKTLVTILET----VKKPW 749 (903)
Q Consensus 686 ~~ll~~l~~----pG-D~Vlv~~P~y~~~~~~~-~~~G~~vv~---v~~~~~---~~f~ld~~~L~~~l~~----~~~~~ 749 (903)
..++..... .| ..|+....+|-+....+ ...|-.... .|..+. -.| .|.+.+++.+.. ....+
T Consensus 155 e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~~~iA 233 (459)
T PRK11522 155 EAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPF-GNIEAMRTALSECKKTGDDVA 233 (459)
T ss_pred HHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCC-CCHHHHHHHHHHhhccCCcEE
Confidence 887765421 12 25777766665543322 222211111 111110 011 267788877752 12235
Q ss_pred EEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 750 VYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 750 vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
.++.-|-+.-.|.+ .+.+.++++.++|++||+++|.||+..++--.|.. +. ....+-.| .| -+|+
T Consensus 234 avIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~---~a----~e~~gv~P-----Di--vt~g 299 (459)
T PRK11522 234 AVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKM---FA----CEHENVQP-----DI--LCLA 299 (459)
T ss_pred EEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchh---hh----hhccCCCC-----CE--EEec
Confidence 55666664556765 46778999999999999999999999654212221 11 11122222 22 2889
Q ss_pred hhccccc-ceeeEEEeCcHHHHHHHHhC----CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 829 LKMLTGA-LKFGFLVLNHPQLVDAFSSF----PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 829 K~~g~~G-lRiG~lv~~~~~li~~l~~~----~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
|.+| .| +.+|.+++.++ +.+.+..- ..+.+.++.+-.++.+.|+.-.. +++.+.+.++-+.++++.+.
T Consensus 300 K~lg-gG~~Pigav~~~~~-i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~ 372 (459)
T PRK11522 300 KALG-GGVMPIGATIATEE-VFSVLFDNPFLHTTTFGGNPLACAAALATINVLLE--QNLPAQAEQKGDYLLDGFRQ 372 (459)
T ss_pred hhhh-CCCccceeEEEcHH-HHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHH
Confidence 9997 57 68999999877 87776421 12555677777777777743222 23445555555555544443
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=104.74 Aligned_cols=139 Identities=20% Similarity=0.335 Sum_probs=85.5
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||+.||+|.+++.+|+. ..+|+|+|+++.+++.|++|+..|++ ++++|+.++..+....
T Consensus 198 ~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~N~i----------------~n~~f~~~~~~~~~~~ 259 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKLNGI----------------DNVEFIRGDAEDFAKA 259 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHHTT------------------SEEEEE--SHHCCCH
T ss_pred CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHHcCC----------------CcceEEEeeccchhHH
Confidence 38999999999999999987 57999999999999999999999998 5899998876543210
Q ss_pred ---------------CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 112 ---------------HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 112 ---------------~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
....+|+|+.+||=--.+ . .+++.+
T Consensus 260 ~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~------~----------------------------------~~~~~~ 299 (352)
T PF05958_consen 260 LAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD------E----------------------------------KVIELI 299 (352)
T ss_dssp HCCS-GGTTGGGS-GGCTTESEEEE---TT-SC------H----------------------------------HHHHHH
T ss_pred HHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch------H----------------------------------HHHHHH
Confidence 012689999777754211 1 223323
Q ss_pred hhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 177 IGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 177 ~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
.+ +.=++++.++......-+. .|. .||++.++... ..|..+..++.++.++|
T Consensus 300 ~~---~~~ivYvSCnP~tlaRDl~-~L~-~~y~~~~v~~~-------DmFP~T~HvE~v~lL~r 351 (352)
T PF05958_consen 300 KK---LKRIVYVSCNPATLARDLK-ILK-EGYKLEKVQPV-------DMFPQTHHVETVALLER 351 (352)
T ss_dssp HH---SSEEEEEES-HHHHHHHHH-HHH-CCEEEEEEEEE--------SSTTSS--EEEEEEEE
T ss_pred hc---CCeEEEEECCHHHHHHHHH-HHh-hcCEEEEEEEe-------ecCCCCCcEEEEEEEEe
Confidence 22 3446667776654445543 454 48998877322 23344556776666665
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=9.5e-07 Score=100.27 Aligned_cols=211 Identities=13% Similarity=0.091 Sum_probs=124.2
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC------CC-C---chHHHHHHHHHHHhhcCCC----CCCCCcEEecCc
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM------SE-S---EIDVTPSIQQYIKSNFGFP----IDINAEFIYADC 680 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~------~~-G---~~~lr~ala~~l~~~~G~~----~~pe~~I~vt~G 680 (903)
..|+|--++|. +++.+++++...+.. |.. .+ | ..++.+...+..++.||.+ .. +|-.-+|
T Consensus 21 ~~l~LiaSEN~--~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~~~~~w~a---nvqp~SG 95 (399)
T PF00464_consen 21 STLNLIASENY--MSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGAEPKEWYA---NVQPHSG 95 (399)
T ss_dssp HSEE-CTT-------HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-STTTEEE---E---SSH
T ss_pred cCccccCcccc--cCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCCCcccceE---EeecCCc
Confidence 57888877775 456666666555433 211 11 2 2334445566677888988 44 5666677
Q ss_pred hHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----------HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEE
Q 043334 681 SQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----------RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWV 750 (903)
Q Consensus 681 s~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----------~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~v 750 (903)
+.+.+ .++.+|++|||+|+..++..+++...- .....+.+++++++ ++..+|.+++++.+...++++|
T Consensus 96 s~An~-av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~kPklI 173 (399)
T PF00464_consen 96 SQANL-AVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDP-DTGLIDYDELEKLAKEHKPKLI 173 (399)
T ss_dssp HHHHH-HHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-T-TTSSB-HHHHHHHHHHH--SEE
T ss_pred hHHHH-HHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeec-CCCeECHHHHHHHHhhcCCCEE
Confidence 76554 568899999999999988776654321 22446888999986 3577999999999887665566
Q ss_pred EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
++..-+ .|- . -+++++.++|.+.|.+|+.|-++- +|+-.+... +. ++. -.|+.+|.-|
T Consensus 174 i~G~S~-y~~--~---~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~------~P---~~~------ADvvt~sThK 232 (399)
T PF00464_consen 174 ICGASS-YPR--P---IDFKRFREIADEVGAYLMADISHIAGLIAGGLFP------NP---FPY------ADVVTGSTHK 232 (399)
T ss_dssp EEE-SS-TSS--------HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--------G---CCT------SSEEEEESSG
T ss_pred EECchh-ccC--c---cCHHHHHHHHHhcCcEEEecccccccceehheec------Cc---ccc------ceEEEeeccc
Confidence 555433 332 2 347888888999999999999883 233333221 11 111 3589999999
Q ss_pred hcccccceeeEEEeC-------------cHHHHHHHHhCC
Q 043334 830 KMLTGALKFGFLVLN-------------HPQLVDAFSSFP 856 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~-------------~~~li~~l~~~~ 856 (903)
+| +|=|-|.|.++ ++++.+++.+..
T Consensus 233 tl--~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~av 270 (399)
T PF00464_consen 233 TL--RGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAV 270 (399)
T ss_dssp GG---SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHH
T ss_pred cc--cccCceEEEEcCCccccCCcccccHHHHHHHhcccc
Confidence 98 68899999999 455888888743
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.8e-05 Score=92.23 Aligned_cols=190 Identities=13% Similarity=0.143 Sum_probs=127.7
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCC----CCcEEecCchHHHHHHHHHHhcc-----------CCCeEEEcCCCcHHHHH
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPIDI----NAEFIYADCSQSLFNKLVLCCIL-----------EGGTLCFPAGSNGNYVS 711 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~~p----e~~I~vt~Gs~~al~~ll~~l~~-----------pGD~Vlv~~P~y~~~~~ 711 (903)
+.+..++.+.+.+|+++.+|.+..- ...=++++|++++...++.+-.+ |.-.|++++.++.....
T Consensus 165 sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~K 244 (539)
T PLN02590 165 SPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRK 244 (539)
T ss_pred CchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHH
Confidence 4456778899999999999987420 01245566666655443433211 12256678889999999
Q ss_pred HHHHcCC---EEEEecCCCCCCcccCHHHHHHHhhcC----CCc-EEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 712 AARFLKA---NIVNIPTESEVGFKMTEKTLVTILETV----KKP-WVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 712 ~~~~~G~---~vv~v~~~~~~~f~ld~~~L~~~l~~~----~~~-~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
++..+|. +++.||++..+++.||+++|++++... ..+ +|+-+-.+ -+||.+ +.+++|.++|++||+|+
T Consensus 245 Aa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGT-T~tGai---Dpl~~Ia~i~~~~g~Wl 320 (539)
T PLN02590 245 ACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGT-TSSAAV---DPLVPLGNIAKKYGIWL 320 (539)
T ss_pred HHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCC-CCCccc---CCHHHHHHHHHHhCCeE
Confidence 9999998 589999986567899999999998642 224 44444444 778888 45999999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH-HHHHHH
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP-QLVDAF 852 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~-~li~~l 852 (903)
.+|-+|++...-... .+..+..+.. -.-+...+.|.+. ...-+|.++..+. .+.+.+
T Consensus 321 HVDaA~GG~al~~~~-----~r~~~~Gie~------ADSit~D~HK~l~-~p~~cg~llvr~~~~l~~a~ 378 (539)
T PLN02590 321 HVDAAYAGNACICPE-----YRKFIDGIEN------ADSFNMNAHKWLF-ANQTCSPLWVKDRYSLIDAL 378 (539)
T ss_pred EEecchhhhhhcChh-----hHHHhcCCcc------CCEEEECchhhcC-cCcCEEEEEecCHHHHHHHh
Confidence 999999875421111 0111222221 2346778899764 6677888887764 244443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-07 Score=102.73 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=105.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||.|.-+..+|...++ ..|++.|+++.-++..++|+.+.|+ .++.+...|...
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~----------------~nv~v~~~D~~~ 175 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV----------------SNVALTHFDGRV 175 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CeEEEEeCchhh
Confidence 37789999999999999999998754 5899999999999999999999887 478899999876
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+.....+.||.|+..+|..-..-...-+.....+.++.. ... ..+-.++++.+.+.|||||+++
T Consensus 176 ~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v----~~l------------~~lQ~~iL~~A~~~LkpGG~LV 239 (470)
T PRK11933 176 FGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESN----LEI------------AATQRELIESAFHALKPGGTLV 239 (470)
T ss_pred hhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHH----HHH------------HHHHHHHHHHHHHHcCCCcEEE
Confidence 543323479999999998754333222211111111110 111 1234489999999999999998
Q ss_pred EEeCC---CCcHHHHHHHHHHCC
Q 043334 188 FNMGG---RPGQGVCKRLFERRG 207 (903)
Q Consensus 188 ~~~~~---~~~~~~l~~ll~~~g 207 (903)
..+.+ ......+..++++.+
T Consensus 240 YSTCT~~~eENE~vV~~~L~~~~ 262 (470)
T PRK11933 240 YSTCTLNREENQAVCLWLKETYP 262 (470)
T ss_pred EECCCCCHHHHHHHHHHHHHHCC
Confidence 87665 345556666777653
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-06 Score=94.37 Aligned_cols=213 Identities=10% Similarity=0.100 Sum_probs=137.8
Q ss_pred CCCcHHHHHHHHHHHHcc--------CCCCCc---hHHHHHHHHHHHhhcCCCCCCCCcEE-ecCchHHHHHHHHHHhcc
Q 043334 627 LPIPSLVKAAIFESFARQ--------NMSESE---IDVTPSIQQYIKSNFGFPIDINAEFI-YADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y--------~~~~G~---~~lr~ala~~l~~~~G~~~~pe~~I~-vt~Gs~~al~~ll~~l~~ 694 (903)
-..|+.+++++...+..+ ....-. .++.+.+.+.+++.+|.+.+ . +++ ++++++.++..++..++.
T Consensus 12 ~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~-~-~v~~~~gsgt~~~Ea~~~nl~~ 89 (360)
T PRK05355 12 AMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDN-Y-KVLFLQGGASLQFAMVPMNLLG 89 (360)
T ss_pred CCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-c-EEEEEcCCchHHHHHHHHhcCC
Confidence 347889999988876432 111112 36677888888888887432 2 354 456778889999999999
Q ss_pred CCCeEEEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 695 EGGTLCFPAGSNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 695 pGD~Vlv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
+||++++..-+..+ +...++.+|.. ..+..++..++..+++..+..++++. ++|.+++-. |.||...+ .+.+|
T Consensus 90 ~g~~~l~i~~G~fg~r~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~-~~V~~th~e-TstGv~~~--~i~~i 164 (360)
T PRK05355 90 GGKKADYVDTGSWSKKAIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDA-AYVHYTSNE-TIDGTEFH--ELPDT 164 (360)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCC-CEEEEccCC-CcceEecC--ccccc
Confidence 99988877666554 45567888865 55555432333222333332666544 588888887 99999984 25554
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
+|+++|+|-+-+ ++..+. + + ++ ..+++.|--|.+|.|| +|+++++++ +.+++
T Consensus 165 ------~g~l~vVDavss---~g~~~i---d----v---~~------~d~~~~ssqK~lgP~G--lg~l~~s~~-~l~~~ 216 (360)
T PRK05355 165 ------GDVPLVADMSSD---ILSRPI---D----V---SK------FGLIYAGAQKNIGPAG--LTIVIVRED-LLGRA 216 (360)
T ss_pred ------CCCcEEEEcCcc---ccCccC---C----H---HH------ccEEEEeccccccCCc--eEEEEECHH-HHhhc
Confidence 799999999763 222221 1 1 11 1278888899999777 799999987 66665
Q ss_pred Hh-CC------------C-CCCCcHHHHHHHHHHHh
Q 043334 853 SS-FP------------G-LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 853 ~~-~~------------~-~~~~s~~~Q~aa~~~L~ 874 (903)
.. .. . ...++...-++..++|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~aL~ 252 (360)
T PRK05355 217 LPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGLVFK 252 (360)
T ss_pred ccCCChHHHHHHHHhcCCccCCCcHHHHHHHHHHHH
Confidence 44 11 1 34455556666666663
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.4e-07 Score=97.80 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=66.1
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+.++.|||+|||+|.++...|+. +..+|++++-|. |.+.|++-++.|++ .+|+.++.|.+.+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~-MAqyA~~Lv~~N~~---------------~~rItVI~GKiEd 237 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASE-MAQYARKLVASNNL---------------ADRITVIPGKIED 237 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHh-CcceEEEEehhH-HHHHHHHHHhcCCc---------------cceEEEccCcccc
Confidence 388999999999999999998776 467999999975 99999999888876 5899999999999
Q ss_pred cccCCCCceeEEEEC
Q 043334 108 YCRDHDIQLERIVGC 122 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~N 122 (903)
...++ +.|+||+-
T Consensus 238 ieLPE--k~DviISE 250 (517)
T KOG1500|consen 238 IELPE--KVDVIISE 250 (517)
T ss_pred ccCch--hccEEEec
Confidence 87665 89999964
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-05 Score=92.03 Aligned_cols=245 Identities=11% Similarity=0.063 Sum_probs=143.2
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCC----CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMS----ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~----~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
...|...||+..|- ..++ ..|.+.+++.+.+.++... .+..+....+++.+.+..+...+ .+++++++++
T Consensus 50 D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~---~v~f~~SGse 126 (460)
T PRK12403 50 DNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYS---HAIYTNSGSE 126 (460)
T ss_pred eCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcC---EEEEeCCcHH
Confidence 35677889976542 2233 4688999999988764321 23455677788888776543233 7888888888
Q ss_pred HHHHHHHHhc-------cCCCe-EEEcCCCcHH-HHHHHHHcCCE-----------EEEecCCC--CCCccc--------
Q 043334 684 LFNKLVLCCI-------LEGGT-LCFPAGSNGN-YVSAARFLKAN-----------IVNIPTES--EVGFKM-------- 733 (903)
Q Consensus 684 al~~ll~~l~-------~pGD~-Vlv~~P~y~~-~~~~~~~~G~~-----------vv~v~~~~--~~~f~l-------- 733 (903)
+...++.... ++++. |+...-+|-+ ........|.+ +..+|... ...+..
T Consensus 127 A~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 206 (460)
T PRK12403 127 ANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRR 206 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHHH
Confidence 8888777663 23333 4443444433 33333333322 22222110 000111
Q ss_pred CHHHHHHHhhc--CCCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 734 TEKTLVTILET--VKKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 734 d~~~L~~~l~~--~~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
+.+.+++.+.+ ....+.+|.-|-+.--|.+ .+.+.+++|.++|++||+++|.||+..++-=.|.. +. ...
T Consensus 207 ~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~---~a----~e~ 279 (460)
T PRK12403 207 AALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEW---FA----HEH 279 (460)
T ss_pred HHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh---hh----hhh
Confidence 12445555532 1223456666664555654 57789999999999999999999999654222222 11 111
Q ss_pred hccCCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHhC-----C-CCCCCcHHHHHHHHHHHh
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSSF-----P-GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~~-----~-~~~~~s~~~Q~aa~~~L~ 874 (903)
++-.| .|+ +++|.++ .|. .+|.+++.++ +.+.+... . .+.+.++.+-.++.+.|+
T Consensus 280 ~gv~P-----Div--~~gK~lg-gG~~Piga~v~~~~-i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~ 341 (460)
T PRK12403 280 FGFEP-----DTL--SIAKGLT-SGYVPMGGLVLSKR-IAEALVEQGGVFAHGLTYSGHPVAAAVAIANLK 341 (460)
T ss_pred cCCCC-----CeE--EEccccc-ccccceEEEEECHH-HHHHHhcCCCccccCCCCCCCHHHHHHHHHHHH
Confidence 22222 233 3899997 574 8998888876 88877531 1 255566777777777774
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4e-07 Score=105.45 Aligned_cols=75 Identities=25% Similarity=0.318 Sum_probs=59.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh----CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW----LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~----~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
+++.|+|+|||+|.++...++.. ...+|+++|.|+.++...++.++.|+. .++|+++++|+
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w---------------~~~V~vi~~d~ 250 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW---------------GDKVTVIHGDM 250 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT---------------TTTEEEEES-T
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC---------------CCeEEEEeCcc
Confidence 35789999999999987665542 346999999999999888877777877 36899999999
Q ss_pred cccccCCCCceeEEEE
Q 043334 106 LAYCRDHDIQLERIVG 121 (903)
Q Consensus 106 ~~~~~~~~~~fD~Iv~ 121 (903)
.+...+. ++|+|||
T Consensus 251 r~v~lpe--kvDIIVS 264 (448)
T PF05185_consen 251 REVELPE--KVDIIVS 264 (448)
T ss_dssp TTSCHSS---EEEEEE
T ss_pred cCCCCCC--ceeEEEE
Confidence 9997765 8999995
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-05 Score=92.29 Aligned_cols=261 Identities=11% Similarity=0.064 Sum_probs=157.3
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..|. ..++ ..|.+.+++.+.+.+........+....+++.+.+..+ .+ .+.++++++++...
T Consensus 71 D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~lAe~l~~~~~--~~---~v~F~nSGtEA~e~ 145 (453)
T PRK07046 71 DVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGLTTMLPSEDAAWVGEELARRFG--LP---YWQVATTATDANRF 145 (453)
T ss_pred eCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhC--CC---EEEEECCHHHHHHH
Confidence 34677889986553 3344 56788999988887643323344556677787877653 33 78999988888887
Q ss_pred HHHHhcc--CCCeEEEcCCCcHHHHH-HH-HHcCCEEEE------ec--CCC---CCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 688 LVLCCIL--EGGTLCFPAGSNGNYVS-AA-RFLKANIVN------IP--TES---EVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 688 ll~~l~~--pGD~Vlv~~P~y~~~~~-~~-~~~G~~vv~------v~--~~~---~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
+++.... ..+.|+...-+|-+... .. ...+.+... ++ ... .-.| -|++.+++.+.... .+.+|
T Consensus 146 AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-nd~~~l~~~l~~~~-vAavi 223 (453)
T PRK07046 146 VLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-NDLAALEAALADGD-VAAVL 223 (453)
T ss_pred HHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-CCHHHHHHHhCCCC-eEEEE
Confidence 7765421 23567777766655421 11 111111000 00 000 0012 27899998886434 36666
Q ss_pred ECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc--cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 753 SGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLE--FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 753 ~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~--f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
.-|-+.-.| ...+.+.++++.++|+++|+++|.||+.. +- +++. ...++-.| .++ +|+|
T Consensus 224 ~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-fr~g~Gg~----------~~~~gv~P-----Di~--t~gK 285 (453)
T PRK07046 224 AEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-ISSGPGGY----------TRAHGLEP-----DFL--VVGK 285 (453)
T ss_pred ECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-CccCCcch----------hHHhCCCc-----cce--eehh
Confidence 677733334 34566889999999999999999999985 22 2221 11122222 222 5899
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhC-----------CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSF-----------PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~-----------~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
.+| .|+.+|.++++++ +.+.+... .++.+.++.+-.++.+.|+.-.. +++.+.+.++-+.++++.
T Consensus 286 ~lg-gG~Pi~av~g~~~-i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~--~~~~~~~~~~g~~l~~~L 361 (453)
T PRK07046 286 PIA-GGVPCAVYGFSAE-LAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT--EAAYAHMLALAARLAAGL 361 (453)
T ss_pred hhc-CCCcceeeeehHH-HHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 998 6899999999887 88887531 12556677777777777752111 223455555555555554
Q ss_pred HH
Q 043334 899 KR 900 (903)
Q Consensus 899 ~~ 900 (903)
+.
T Consensus 362 ~~ 363 (453)
T PRK07046 362 RA 363 (453)
T ss_pred HH
Confidence 43
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.5e-07 Score=98.67 Aligned_cols=119 Identities=21% Similarity=0.198 Sum_probs=85.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||.+|+|.|..+..+.+..+..+|+.+|+|+++++.|++.+..++- .-..++++++.+|...+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~------------~~~dprv~v~~~Da~~~L 170 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE------------AFCDKRLELIINDARAEL 170 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc------------cccCCceEEEEChhHHHH
Confidence 46799999999999999888765567999999999999999988754320 001368999999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHH-HHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE-EGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~-~~~~~LkpgG~ll~ 188 (903)
....++||+|+...+--.... ... .+. -..+++ .+.+.|+|||++++
T Consensus 171 ~~~~~~yDvIi~D~~dp~~~~---~~~------------------~Ly-----------t~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 171 EKRDEKFDVIIGDLADPVEGG---PCY------------------QLY-----------TKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred hhCCCCccEEEecCCCccccC---cch------------------hhc-----------cHHHHHHHHHHhcCCCcEEEE
Confidence 655568999996532100000 000 000 125677 78999999999998
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
..+.
T Consensus 219 q~~s 222 (336)
T PLN02823 219 QAGP 222 (336)
T ss_pred eccC
Confidence 7664
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.4e-06 Score=92.85 Aligned_cols=269 Identities=14% Similarity=0.108 Sum_probs=158.1
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..| ...++ -.+.+.+++.+.+..... .....+...++++.+.+..+...+ +++++++++++
T Consensus 12 d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~---~v~f~~sGseA 88 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLD---RVFFANSGSEA 88 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEE---EEEEESSHHHH
T ss_pred ECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhhccccccc---eeeeccCchHH
Confidence 3467788999644 44444 467888888888766433 223456678888888887744333 89999999999
Q ss_pred HHHHHHHhc-------cCC-CeEEEcCCCcHHHHHHHHH-c------------CCEEEEecCCCCCC---cccCHHHHHH
Q 043334 685 FNKLVLCCI-------LEG-GTLCFPAGSNGNYVSAARF-L------------KANIVNIPTESEVG---FKMTEKTLVT 740 (903)
Q Consensus 685 l~~ll~~l~-------~pG-D~Vlv~~P~y~~~~~~~~~-~------------G~~vv~v~~~~~~~---f~ld~~~L~~ 740 (903)
+..++.... .+| ..|+...-+|-+....+.. . ...+..+|...... ..-....+++
T Consensus 89 ve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (339)
T PF00202_consen 89 VEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEE 168 (339)
T ss_dssp HHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHH
Confidence 998887665 223 5788888777653322211 1 12345555532100 0000111222
Q ss_pred H---hhcCCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCC
Q 043334 741 I---LETVKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTN 816 (903)
Q Consensus 741 ~---l~~~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~ 816 (903)
. ...... +.+|.-|-+.-.|. ..+.+.+++|.++|+++|+++|.||+..++--.|.. +. .....-.|
T Consensus 169 ~~~~~~~~~i-aavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~---~a----~~~~gv~P- 239 (339)
T PF00202_consen 169 LIAALNADEI-AAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKF---FA----SEHYGVDP- 239 (339)
T ss_dssp HHHHHHGGGE-EEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSS---SG----HHHHTSSS-
T ss_pred HHHhhcCCcE-EEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCc---cc----eecccccC-
Confidence 2 222333 55566676334454 456788999999999999999999999776433432 11 22222222
Q ss_pred CCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Q 043334 817 SSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNL 894 (903)
Q Consensus 817 ~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y 894 (903)
.|+ +++|.++ .|+.+|.++++++ +.+.+.... .+.+.++.+-.++.+.|+.-+. +++.+.+.+.-+.+
T Consensus 240 ----Div--~~gK~l~-gG~p~sav~~~~~-i~~~~~~~~~~~T~~g~p~~~aaa~~~l~~~~~--~~~~~~~~~~g~~l 309 (339)
T PF00202_consen 240 ----DIV--TFGKGLG-GGLPISAVLGSEE-IMEAFQPGSHGSTFGGNPLSCAAALATLEILEE--EDLLERVRELGERL 309 (339)
T ss_dssp ----SEE--EEEGGGG-TTSSEEEEEEEHH-HHTTSCTTSSTCTTTT-HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred ----ccc--ccccchh-hhhhcccccccch-hhccccccccccccccchHhhhhhhhHHHhhcc--HHHHHHHHHHHHHH
Confidence 233 3369997 6799999999987 777664322 3666677777777777742221 23445555555555
Q ss_pred HHHHHHH
Q 043334 895 ESRSKRL 901 (903)
Q Consensus 895 ~~Rr~~l 901 (903)
+++.+.+
T Consensus 310 ~~~L~~l 316 (339)
T PF00202_consen 310 REGLREL 316 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-05 Score=92.91 Aligned_cols=269 Identities=8% Similarity=0.016 Sum_probs=157.5
Q ss_pred cCCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCC---C-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 611 ETPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSE---S-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 611 ~~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~---G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
...|...||+..|. ..++ ..+.+.+++.+.+.+..... + ..+.+..+++.+.+......+ .+++++++++
T Consensus 42 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~---~v~f~~sGSE 118 (459)
T PRK05965 42 DASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLN---HVYFTLGGSD 118 (459)
T ss_pred ECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcC---EEEEeCChhH
Confidence 35677899986553 3333 46788899888876632211 1 234456677777765432222 7999999999
Q ss_pred HHHHHHHHhcc-------CC-CeEEEcCCCcHHHHHHH-HHcCC------------EEEEecCCC--CCCcccC------
Q 043334 684 LFNKLVLCCIL-------EG-GTLCFPAGSNGNYVSAA-RFLKA------------NIVNIPTES--EVGFKMT------ 734 (903)
Q Consensus 684 al~~ll~~l~~-------pG-D~Vlv~~P~y~~~~~~~-~~~G~------------~vv~v~~~~--~~~f~ld------ 734 (903)
+...++..... +| ..|+....+|-+....+ ...|. .+..++... ...+.-|
T Consensus 119 Ave~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK05965 119 AVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIA 198 (459)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHH
Confidence 98888765421 22 46777777776543221 11111 112222110 0001112
Q ss_pred --HHHHHHHhhcC--CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 735 --EKTLVTILETV--KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 735 --~~~L~~~l~~~--~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
++.+++.+... ...+.+|.-|-|.-.|. +.+.+.++++.++|++||+++|.||+..++--.|..+ . ..
T Consensus 199 ~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~---a----~~ 271 (459)
T PRK05965 199 ASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLF---A----CE 271 (459)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhh---h----Hh
Confidence 25677766532 12245555566455566 4678899999999999999999999996653233221 1 11
Q ss_pred hhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh--------CC-CCCCCcHHHHHHHHHHHhccccc
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS--------FP-GLSKPHSTVRYAIKKLLGLRERK 879 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~--------~~-~~~~~s~~~Q~aa~~~L~~~~~~ 879 (903)
..+-.| . +-.++|.++ .| +.+|.++++++ +.+.+.. .. .+++.++.+-.++.+.|+.-+.
T Consensus 272 ~~gv~P-----D--iv~~gKgl~-gG~~Pi~av~~~~~-i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~- 341 (459)
T PRK05965 272 AEGVVP-----D--LMTVAKGLT-SGYVPMGAVLMSDH-VYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHE- 341 (459)
T ss_pred hcCCCC-----C--eEEechhhc-cCCcceeEEEEcHH-HHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHh-
Confidence 222223 1 234589997 68 49999999987 8887752 12 2566777777777777742221
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 043334 880 ARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+.+.+...++-+.+.++.+.
T Consensus 342 -~~l~~~~~~~g~~l~~~l~~ 361 (459)
T PRK05965 342 -GGLLANGQKAGPRFAAGLDA 361 (459)
T ss_pred -ccHHHHHHHHHHHHHHHHHh
Confidence 23445555555555555443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.8e-07 Score=98.47 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=63.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+++|+|+.+++.++++... .++++++++|+.+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~------------------~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL------------------YERLEVIEGDALKVD 88 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc------------------CCcEEEEECchhcCC
Confidence 56899999999999999999984 5799999999999999987632 147999999998875
Q ss_pred cCCCCcee---EEEECCCCCC
Q 043334 110 RDHDIQLE---RIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD---~Iv~NpPy~~ 127 (903)
.. .+| +|++|+||..
T Consensus 89 ~~---~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 89 LP---DFPKQLKVVSNLPYNI 106 (253)
T ss_pred hh---HcCCcceEEEcCChhh
Confidence 43 466 9999999873
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=92.94 Aligned_cols=267 Identities=11% Similarity=0.089 Sum_probs=159.4
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC----CCchHHHHHHHHHHHhhcC-CCCCCCCcEEecCchH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS----ESEIDVTPSIQQYIKSNFG-FPIDINAEFIYADCSQ 682 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~----~G~~~lr~ala~~l~~~~G-~~~~pe~~I~vt~Gs~ 682 (903)
...|...||+..| ...++ ..|.+.+++.+.+.++... .+..+....+++.+.+.+. .+.+ .++++++++
T Consensus 85 D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~---~v~f~~SGs 161 (504)
T PLN02760 85 DINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMG---KVFFTNSGS 161 (504)
T ss_pred ECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCC---EEEEeCChH
Confidence 3467889998765 33444 5778899998888764321 2345566778888776543 2222 688888889
Q ss_pred HHHHHHHHHhc------c-CC-CeEEEcCCCcHHH-HHHHHHcCCE------------EEEecCCCCCCcc---------
Q 043334 683 SLFNKLVLCCI------L-EG-GTLCFPAGSNGNY-VSAARFLKAN------------IVNIPTESEVGFK--------- 732 (903)
Q Consensus 683 ~al~~ll~~l~------~-pG-D~Vlv~~P~y~~~-~~~~~~~G~~------------vv~v~~~~~~~f~--------- 732 (903)
++...++.... . +| ..|+..+-+|-+. .......|.. +..++.. +.|.
T Consensus 162 EA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~ 239 (504)
T PLN02760 162 EANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCP--HYWRFHLPGETEE 239 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCC--cccccCCCCCcHH
Confidence 88888777653 1 22 4677666666543 3333323321 1112211 0111
Q ss_pred ----cCHHHHHHHhhcC--CCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 733 ----MTEKTLVTILETV--KKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 733 ----ld~~~L~~~l~~~--~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
...+.+++.+... ...+.+|.-|-+.-.|.+ .+.+.+++|.++|++||+++|.||+..++--.|.. +.
T Consensus 240 ~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~---~a-- 314 (504)
T PLN02760 240 EFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTM---FG-- 314 (504)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchh---hH--
Confidence 0124566666421 223566666764545654 46889999999999999999999999555222222 11
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC--------C-CCCCCcHHHHHHHHHHHhc
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF--------P-GLSKPHSTVRYAIKKLLGL 875 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~--------~-~~~~~s~~~Q~aa~~~L~~ 875 (903)
....+-.| | +-+|+|.+| .| +.+|.++++++ +.+.+... . .+.+.++.+-.++.+.|+.
T Consensus 315 --~e~~gv~P---D----ivtlgK~lg-gG~~PigAv~~~~~-i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~ 383 (504)
T PLN02760 315 --CDKYNIKP---D----LVSLAKALS-SAYMPIGAVLVSPE-ISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKI 383 (504)
T ss_pred --HHhcCCCC---c----EEEeccccc-CCccccceEeecHH-HHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence 11122222 2 567899997 45 58999999877 88887531 2 2556677777778777743
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHH
Q 043334 876 RERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 876 ~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
-.. +.+.++++++-+.++++.+.
T Consensus 384 i~~--~~l~~~~~~~g~~l~~~L~~ 406 (504)
T PLN02760 384 YKE--RNIPEHVNKIAPRFQDGIKA 406 (504)
T ss_pred HHh--CCHHHHHHHHHHHHHHHHHH
Confidence 222 23455666666666655543
|
|
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-06 Score=95.78 Aligned_cols=196 Identities=11% Similarity=0.148 Sum_probs=134.7
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC
Q 043334 648 ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES 727 (903)
Q Consensus 648 ~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~ 727 (903)
.|..+..+.+++.++++.|++.. +++..| -+.-.+.+.+++.||.-|+-..-.+.....-++..|+.++.+..+
T Consensus 178 ~G~~~~hkelE~l~A~f~g~e~a----~vF~mG-f~TNs~~~p~l~~~gsLIiSDelNHaSi~~GaRLSgAtiRVfkHN- 251 (519)
T KOG1357|consen 178 AGTTEEHKELEELVARFLGVEDA----IVFSMG-FATNSMNIPSLLGKGSLIISDELNHASLITGARLSGATTRVFRHN- 251 (519)
T ss_pred cccHHHHHHHHHHHHHhcCCcce----EEEecc-ccccccCcceeecCCcceeeccccchheeccccccCceEEEEecC-
Confidence 47778888999999999998755 788777 334444577889999999999999999999999999999988764
Q ss_pred CCCcccCHHHHHHHhhc-------CCC---cEEEEECCC-CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCC
Q 043334 728 EVGFKMTEKTLVTILET-------VKK---PWVYISGPT-INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNY 796 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~-------~~~---~~vil~~P~-~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~ 796 (903)
|...|++.+++ ++- +.++++.-+ -.--|.+. .+.+++++++++..+++.||+++--.-+.
T Consensus 252 ------dm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv---~Lp~vvalkkkykayl~lDEAHSiGA~g~ 322 (519)
T KOG1357|consen 252 ------DMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIV---DLPEVVALKKKYKAYLYLDEAHSIGAMGA 322 (519)
T ss_pred ------CHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeec---ccHHHHHhhccccEEEEeeccccccccCC
Confidence 34555555542 110 123333333 13445554 48999999999999999999996433322
Q ss_pred CCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC-----CCCCcHHHHHHHH
Q 043334 797 EGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG-----LSKPHSTVRYAIK 870 (903)
Q Consensus 797 ~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~-----~~~~s~~~Q~aa~ 870 (903)
.+ ..+ ..+.+. ++.+..|.+++|+|+||..| ||+.++++ +++.++.... .+.++...|....
T Consensus 323 tG---rgv----ce~~g~-d~~dvDImMGtftKSfga~G---Gyiagsk~-lid~lrt~s~~~~yat~~sppvaqq~~s 389 (519)
T KOG1357|consen 323 TG---RGV----CEYFGV-DPEDVDIMMGTFTKSFGAAG---GYIAGSKE-LIDYLRTPSPSALYATSLSPPVAQQILT 389 (519)
T ss_pred CC---cce----eeccCC-Cchhheeecceehhhccccc---ceecCcHH-HHhhhccCCCceeecccCChHHHHHHHH
Confidence 21 111 111111 12468899999999999998 99999988 9998876543 3334444454443
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-06 Score=96.31 Aligned_cols=168 Identities=15% Similarity=0.181 Sum_probs=127.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc--
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF-- 731 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f-- 731 (903)
.....++.++.+|.+.+ .++++|++.+...++++++.+||.|+++.+++-+....+...|+.++++....+..|
T Consensus 72 i~eAqe~aA~~fgAd~t----yFvvNGTS~ank~vi~a~~~~GD~VLvdRN~HKSi~~glilaGa~Pvyl~p~~np~~gi 147 (557)
T COG1982 72 IKEAQELAARVFGADHT----YFVVNGTSTANKAVINAVLTPGDKVLVDRNCHKSIHHGLILAGATPVYLEPSRNPLYGI 147 (557)
T ss_pred HHHHHHHHHHHhCCCce----EEEECCccHHHHHHHHhhcCCCCEEEecCCccHHHHHHHHHcCCceEEecCCCCccccc
Confidence 34566777788887765 999999999999999999999999999999999999999999999999977543312
Q ss_pred --ccCHHHHHHHhhcC-CC-cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 732 --KMTEKTLVTILETV-KK-PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 732 --~ld~~~L~~~l~~~-~~-~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.++.+.+++.+... .. ++++++||+ =-|.+++ .++|++.+.++++++.+|+++. ..++-.+. . +-
T Consensus 148 ~ggI~~~~~~~~l~~~~~~~k~~vitnpT--YdGv~~n---~~~i~~~~~~~~a~v~~deah~-~~~~~~~~--l---~~ 216 (557)
T COG1982 148 IGGIPLETFKEALLAHPDAEKLAVITNPT--YDGVCYN---LRKIVELLHHYGAWVLYDEAHP-AHFDFSPM--L---PE 216 (557)
T ss_pred cCCCCHHHHHHHHHhChhhheeEEEecCc--cceEeec---HHHHHHHHhhcCceEEhhhcCc-cccccccc--C---cc
Confidence 36889998776543 33 589999886 7799999 7788888899999999999874 22222111 0 00
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceee-EEEeC
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLN 844 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~ 844 (903)
.... ...+++..|.-|..+ ++.-+ ++...
T Consensus 217 -~~~~-----~~~~~~tqS~HK~l~--alSQaS~iHv~ 246 (557)
T COG1982 217 -SALN-----GGADFVTQSTHKLLA--ALSQASMIHVK 246 (557)
T ss_pred -hhhh-----cCceEEEechhhhhh--hhhhhHHHhhC
Confidence 1111 147899999999874 66655 45454
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.2e-05 Score=90.69 Aligned_cols=268 Identities=12% Similarity=0.035 Sum_probs=155.6
Q ss_pred CCCCCeEEccCC-CCCCC-CcHHHHHHHHHHHHccCCC--CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 612 TPNSGLIHMDVD-QSFLP-IPSLVKAAIFESFARQNMS--ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 612 ~~~~~~IdLs~g-~p~~~-~p~~v~~al~~al~~y~~~--~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
..|...+|+..+ ...++ ..|.+.+++.+.+.+.... .-..+....+++.+.+..+...+ .++++++++++...
T Consensus 69 ~dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~---~v~f~~sGseAve~ 145 (459)
T PRK06082 69 VDGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELN---RVLFAPGGTSAIGM 145 (459)
T ss_pred CCCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCC---EEEECCCcHHHHHH
Confidence 467788998622 22244 5778999998888764321 12345667788888876542222 79999999999888
Q ss_pred HHHHhcc--CCCeEEEcCCCcHHHH-HHHHHcCCE------------EEEecCCCC--CCcc-cC------HHHHHHHhh
Q 043334 688 LVLCCIL--EGGTLCFPAGSNGNYV-SAARFLKAN------------IVNIPTESE--VGFK-MT------EKTLVTILE 743 (903)
Q Consensus 688 ll~~l~~--pGD~Vlv~~P~y~~~~-~~~~~~G~~------------vv~v~~~~~--~~f~-ld------~~~L~~~l~ 743 (903)
++..... ....|+...-+|-+.. ......|.. +..+|.... ..|. .| ++.+++.+.
T Consensus 146 AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 225 (459)
T PRK06082 146 ALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIE 225 (459)
T ss_pred HHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHh
Confidence 7765421 2256766666665432 233222211 122221100 0011 01 355777765
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
.....+.+|.-|-++-.+.+.+.+.+++|.++|++||+++|.||+..++--.|.. +. ....+-.| .|+
T Consensus 226 ~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~---fa----~e~~gv~P-----Div 293 (459)
T PRK06082 226 KEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEW---FT----HQAYGIEP-----DIL 293 (459)
T ss_pred cCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchh---hH----hHhhCCCC-----CEE
Confidence 3222356666666555556788899999999999999999999999764222221 11 11222222 233
Q ss_pred EccCchhccccc-ceeeEEEeCcHHHHHHHHh--CCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS--FPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 824 l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~--~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+|+|.++ .| +.+|.+++.++ +.+.+.. ...+.+.++++-.++.+.|+.-.. +.+.+.+.++-+.++++.+.
T Consensus 294 --~~gKgl~-gG~~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~ 367 (459)
T PRK06082 294 --CIGKGLG-GGLVPIAAMITKDK-YNTAAQISLGHYTHEKSPLGCAAALATIEVIEQ--EGLLEKVKADSQFMRERLLE 367 (459)
T ss_pred --Eeccccc-CCCCcceEEEEcHH-HHhhccCCCCCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH
Confidence 3899998 56 58999999876 6554321 113556677777777777742211 23445555555555555443
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-05 Score=94.44 Aligned_cols=191 Identities=12% Similarity=0.128 Sum_probs=124.1
Q ss_pred CCCchHHHHHHHHHHHhhcCCCC---------CCC-CcEEecCchHHHHHHHHHHh----cc------------------
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPI---------DIN-AEFIYADCSQSLFNKLVLCC----IL------------------ 694 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~---------~pe-~~I~vt~Gs~~al~~ll~~l----~~------------------ 694 (903)
+....++.+.+.+|+.+..+... .++ ..=++|+|++++...++.+- +.
T Consensus 124 spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~ 203 (522)
T TIGR03799 124 SKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALK 203 (522)
T ss_pred CcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhh
Confidence 34456777888899888764210 111 12455666666554444332 11
Q ss_pred ----CCCeEEEcCCCcHHHHHHHHHcCC---EEEEecCCCCCCcccCHHHHHHHhh----cCCCcEEEEECCCCCCcccC
Q 043334 695 ----EGGTLCFPAGSNGNYVSAARFLKA---NIVNIPTESEVGFKMTEKTLVTILE----TVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 695 ----pGD~Vlv~~P~y~~~~~~~~~~G~---~vv~v~~~~~~~f~ld~~~L~~~l~----~~~~~~vil~~P~~NPTG~v 763 (903)
++..|+++.-.+.....+++..|. +++.+|+++ ++.+|+++|++.++ ..++++.++...+.+.||.+
T Consensus 204 ~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~--~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGai 281 (522)
T TIGR03799 204 HYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDA--NNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNI 281 (522)
T ss_pred hccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCC--CCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCc
Confidence 234788999999999999999998 799999974 56799999999886 33433444433333799999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
-+ +++|.++|+++|+++.+|-+|+....-... .-..+.+.. .-..+..|.-|.++. -.-+|.++.
T Consensus 282 Dp---l~eIa~i~~~~g~~lHVDaA~gg~~~~~~~--------~r~~l~gle---~aDSit~d~HK~l~~-P~g~G~llv 346 (522)
T TIGR03799 282 DP---LDEMADIAQELGCHFHVDAAWGGATLLSNT--------YRHLLKGIE---RADSVTIDAHKQLYV-PMGAGMVLF 346 (522)
T ss_pred CC---HHHHHHHHHHcCCeEEEEchhhhHHHhCHH--------HHHHhcCch---hCCEEEEChhhcCCc-CcccEEEEE
Confidence 88 889999999999999999999753221111 111112210 235688899995542 344798888
Q ss_pred CcHHHHHHHHh
Q 043334 844 NHPQLVDAFSS 854 (903)
Q Consensus 844 ~~~~li~~l~~ 854 (903)
.+..+.+.+..
T Consensus 347 r~~~~~~~~~~ 357 (522)
T TIGR03799 347 KDPALMSAIEH 357 (522)
T ss_pred eCHHHHHHhcc
Confidence 76546555543
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 903 | ||||
| 2x5d_A | 412 | Crystal Structure Of A Probable Aminotransferase Fr | 5e-05 | ||
| 1j32_A | 388 | Aspartate Aminotransferase From Phormidium Lapideum | 1e-04 |
| >pdb|2X5D|A Chain A, Crystal Structure Of A Probable Aminotransferase From Pseudomonas Aeruginosa Length = 412 | Back alignment and structure |
|
| >pdb|1J32|A Chain A, Aspartate Aminotransferase From Phormidium Lapideum Length = 388 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 903 | |||
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 2e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-11 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 8e-09 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 2e-08 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 4e-08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 8e-08 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 8e-08 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 2e-07 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 4e-07 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 1e-04 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 6e-07 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 8e-07 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 9e-07 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 1e-06 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 1e-06 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 7e-05 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 2e-06 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 3e-06 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 3e-06 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 3e-06 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 4e-06 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 6e-06 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 1e-05 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 1e-05 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 2e-05 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 3e-05 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 3e-05 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 4e-05 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 4e-05 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 4e-05 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 5e-05 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 6e-05 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 6e-05 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 6e-05 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 8e-05 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 8e-05 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 9e-05 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 1e-04 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 1e-04 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 1e-04 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 1e-04 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 2e-04 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 2e-04 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 2e-04 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 2e-04 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 2e-04 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 3e-04 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 3e-04 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 3e-04 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 3e-04 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 3e-04 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 4e-04 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 6e-04 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 6e-04 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 6e-04 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 6e-04 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 6e-04 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 7e-04 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 7e-04 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 8e-04 |
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 2e-11
Identities = 29/112 (25%), Positives = 45/112 (40%)
Query: 21 LNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80
L + + V +LGC G +T++IA KW PS++ GLDI+ R I + N+ +
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSE 96
Query: 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPD 132
E P E + E + C + R PQ+ D
Sbjct: 97 ELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGAD 148
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 2e-11
Identities = 91/660 (13%), Positives = 184/660 (27%), Gaps = 203/660 (30%)
Query: 217 KILQASEPFFASDTDISALVEIEKN--SPHRFEFFMGLSGDLPICARTAWAYGKAGGRIS 274
IL E F + D + ++ K+ S + + + +S
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-----------------MSKDAVS 62
Query: 275 HALSVYSCQLHQPNQVKKIFKFLKNGFHEISSSLDLSFEDDSVADEKIPFLAYLASVLKE 334
L ++ L + ++ + F + L ++++ +L S +K
Sbjct: 63 GTLRLFWTLLSKQEEMVQKF---------VEEVLRINYK-------------FLMSPIKT 100
Query: 335 RSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAV-------AIENALRLF 387
+P ++ + L DN VF V + AL
Sbjct: 101 E---QRQPSMMTRMY---------IEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLEL 147
Query: 388 SPRLAIVDERLTRH----LPKHWLTSLTIKGTDTENSSEHE---LTVIEAPRQSDLMVEL 440
P + + K W+ + + + L + ++ E+
Sbjct: 148 RP-----AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-EM 201
Query: 441 IKKLKPQVVISGIGDFEAVTSSAFVHLLDVTREVGSRLF-----------LD------IS 483
++KL Q I + SS + + RL L
Sbjct: 202 LQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 484 DHFELSS---LPSSN-GVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIF- 538
+ F LS L + V +L+ + + E +++
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAAT-----------TTHISLDHHSMTLTPDEVKSLLL 308
Query: 539 KALSKTV-----EVLEGTTALISQNYYGCLFHELLAFQLAERHTHKERDCEKAKSTEMIG 593
K L EVL +S + E + LA K +C+K +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLS------IIAESIRDGLATWDNWKHVNCDKLTTI---- 358
Query: 594 FSRSAISVLNSAE-------LSI--------------------TETP--------NSGLI 618
S+++VL AE LS+ L+
Sbjct: 359 -IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 619 HMDVDQSFLPIPSL-------------VKAAIFESFARQNMSESEIDVTPSIQQYIKSNF 665
+S + IPS+ + +I + + +S+ + P + QY S+
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 666 GF------PIDINAEF--IYADCSQSLF--NKLVLCCILEGGTLCFPAGSNGNYVSAARF 715
G + F ++ D F K I T +GS N + +F
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFR---FLEQK-----IRHDSTAWNASGSILNTLQQLKF 529
Query: 716 LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT-------INPTGLLYSNKE 768
K I +++ ++ ++ L + + + S T + ++
Sbjct: 530 YKPYI----CDNDPKYERLVNAILDFLPKI-EENLICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 16/78 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
KD + +LGCG G I IA+A++ DIN RAI+++ N+ LN LD
Sbjct: 52 KDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDN-------- 101
Query: 90 EKKTLLDRVEFHESDLLA 107
+ SDL
Sbjct: 102 ------YDIRVVHSDLYE 113
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90
+ + +LGCGNG I + + +K +KV +D +P A+ S +N+ N +
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA--------- 273
Query: 91 KKTLLDRVEFHESDLLA 107
LDR EF ++ L+
Sbjct: 274 ----LDRCEFMINNALS 286
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 5/105 (4%)
Query: 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPW 749
+ L+ Y A I G+++T+ L + +
Sbjct: 92 VASGLKPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLD--C 149
Query: 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEF 794
+++ P NPTGLL ++ I C +++D AF ++F
Sbjct: 150 LFLCTPN-NPTGLLPERPLLQAIADRCKSLNINLILDEAF--IDF 191
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 37/188 (19%), Positives = 68/188 (36%), Gaps = 47/188 (25%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
KTVA++G G+G I +++A+ + + V+ D++ +A+ I+ N A
Sbjct: 123 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKN---------------A 166
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNP-----NPDAMSKIITENASE 144
E+ + DR + + L ++ +E I+ NP + ++ E
Sbjct: 167 ERHGVSDRFFVRKGEFLEPFKEKFASIEMILS------NPPYVKSSAHLPKDVLFEPPE- 219
Query: 145 EFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQG-VCKRLF 203
AL G ED GL I++ +G Q K++
Sbjct: 220 ----------ALFGG-ED--GLDFYREFFGR---YDTSGKIVLMEIG--EDQVEELKKIV 261
Query: 204 ERRGFRVD 211
F D
Sbjct: 262 SDTVFLKD 269
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Length = 409 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 40/196 (20%)
Query: 604 SAELSITE-TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIK 662
+ + + ++G I L + A + R+ +DV P +
Sbjct: 67 ENKPEVVYYSHSAG------------IWEL-REAFASYYKRRQ----RVDVKPE--NVLV 107
Query: 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVN 722
+N G S+++ G + NY + A+ ++
Sbjct: 108 TNGG--------------SEAILF-SFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIP 152
Query: 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782
+ E GF + + I + + +S P NPTG++Y E+ ++ + ++G
Sbjct: 153 VTRRMEEGFAIPQNLESFI--NERTKGIVLSNPC-NPTGVVYGKDEMRYLVEIAERHGLF 209
Query: 783 VVIDTAFSGLEFNYEG 798
+++D +S E + G
Sbjct: 210 LIVDEVYS--EIVFRG 223
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Length = 391 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-07
Identities = 35/197 (17%), Positives = 63/197 (31%), Gaps = 36/197 (18%)
Query: 618 IHMDVDQ-SFLPIPSLVKAAIFESFARQNMSESEIDVTPS---------IQQYIKSNFGF 667
IHM+V Q P A +++ + T + I + +G
Sbjct: 34 IHMEVGQPGT-GAPRGAVEA-----LAKSLETDALGYTVALGLPALRQRIARLYGEWYGV 87
Query: 668 PIDINAEFIYADCSQSLFNKLVLCCILEGG------TLCFPAGSNGNYVSAARFLKANIV 721
+D I S L + + G +P+ Y R L V
Sbjct: 88 DLDPGRVVITPGSSGGFL--LAFTALFDSGDRVGIGAPGYPS-----YRQILRALGLVPV 140
Query: 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781
++PT E + + + ++ P NPTG + + + ++ GA
Sbjct: 141 DLPTAPENRLQPV----PADFAGLDLAGLMVASPA-NPTGTMLDHAAMGALIEAAQAQGA 195
Query: 782 RVVIDTAFSGLEFNYEG 798
+ D + G+E YE
Sbjct: 196 SFISDEIYHGIE--YEA 210
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 26/236 (11%)
Query: 657 IQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCILEGG------TLCFPAGSNGN 708
I ++++ G + + E + + + ++ C+ + G + +PA
Sbjct: 92 IAKFMEKTRGGRVRFDPERVVMAGGATGANET--IIFCLADPGDAFLVPSPYYPA----- 144
Query: 709 YVSAARFL-KANIVNIPTESEVGFKMTEKTLVTILETVKKP-----WVYISGPTINPTGL 762
+ R+ ++ I ES FK+T K + E +K + ++ P+ NP G
Sbjct: 145 FNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPS-NPLGT 203
Query: 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822
++++L+ ++ +V D ++ ++ + L + + + V
Sbjct: 204 TLDKDTLKSVLSFTNQHNIHLVCDEIYAAT--VFDTPQFVSIAEILDEQEMTYCNKDLVH 261
Query: 823 LLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRE 877
++ LS M L G + G + + +V+ + +Y + +L +
Sbjct: 262 IVYSLSKDMGLPG-FRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSDEK 316
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* Length = 428 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 21/116 (18%)
Query: 295 KFLKNGFHEISS-----SLDLSFEDDSVADEKIPFL-------AYLASVLKERSFFPYEP 342
+ + FH + + + L+ E+ D ++ + ++ ++
Sbjct: 23 AYDSDPFHPLKNPNGVIQMGLA-ENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQD 81
Query: 343 PAGSKRFRNLIADFMKKYH--HIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDE 396
G FR IA FM+K + + + VV+ A E + + D
Sbjct: 82 YHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIF------CLADP 131
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Length = 437 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 26/155 (16%), Positives = 47/155 (30%), Gaps = 27/155 (17%)
Query: 657 IQQYIKSNFGFPIDINAEFIYADC--SQSLFNKLVLC--CILEGG------TLCFPAGSN 706
++ K IDI A Q F ++ F
Sbjct: 91 ASRFAKLFVN--IDIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNL--- 145
Query: 707 GNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKP---WVYISGPTINPTGLL 763
R L + G K+ EK + ++ + S P NPT
Sbjct: 146 --NKLQCRILGQKFESFDLFEYRGEKLREK----LESYLQTGQFCSIIYSNPN-NPTWQC 198
Query: 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEG 798
+++E+ I + K+ V+ D A+ G+ ++
Sbjct: 199 MTDEELRIIGELATKHDVIVIEDLAYFGM--DFRK 231
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 45/161 (27%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPI 86
+ + TV + CGNG T +A + +V+G DI +AI + L
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKL------------ 67
Query: 87 YDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEF 146
L+DRV ++ D ++ V + L P I T +
Sbjct: 68 ---TDLNLIDRVTLI----KDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTI- 119
Query: 147 LYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187
+A+ + + ++ GI+
Sbjct: 120 ------------------------QALSKAMELLVTGGIIT 136
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 9e-07
Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 20/115 (17%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
+ K + ++G + ++ I + + ++ + + N+ + L
Sbjct: 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT------- 71
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHD-IQLERIVG----CIPQILNPNPDAMSKI 137
+++ ++ L+ + D I I G I ILN + D + +
Sbjct: 72 --------SKIDVRLANGLSAFEEADNIDTITICGMGGRLIADILNNDIDKLQHV 118
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 20/95 (21%)
Query: 26 DSIL--------KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN 77
D++L + +A+LG G G +A+A + ++V + + + +L L
Sbjct: 24 DAMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELP 83
Query: 78 ALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDH 112
R+E E+D+ +
Sbjct: 84 DNAA------------FSARIEVLEADVTLRAKAR 106
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 27/157 (17%)
Query: 657 IQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCILEGG------TLCFPAGSNGN 708
+ ++ G + + + A + + + C+ + G T +P
Sbjct: 95 MVDFMAEIRGNKVTFDPNHLVLTAGATSANET--FIFCLADPGEAVLIPTPYYPG----- 147
Query: 709 YVSAARFL-KANIVNIPTESEVGFKMT----EKTLVTILETVKKP-WVYISGPTINPTGL 762
+ ++ IV I S GF++T E+ + + V ++ P+ NP G
Sbjct: 148 FDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS-NPLGT 206
Query: 763 LYSNKEIENILTVCAKYGARVVID-----TAFSGLEF 794
+ E+ +L+ G ++ D TAFS F
Sbjct: 207 TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF 243
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* Length = 435 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 17/108 (15%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 293 IFKFLKNGFHEISS-----SLDLSFEDDSVADEKIPFLA--------YLASVLKERSFFP 339
++ KN +HE+ + + L+ E+ D +LA
Sbjct: 23 WQEYEKNPYHEVHNTNGIIQMGLA-ENQLCFDLLESWLAKNPEAAAFKKNGESIFAELAL 81
Query: 340 YEPPAGSKRFRNLIADFMKKYHH--IPLNADNVVVFPSRAVAIENALR 385
++ G F+ + DFM + + + +++V+ A E +
Sbjct: 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIF 129
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 17/77 (22%)
Query: 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90
V ++GCG G +++A A ++ D++ A+ S L N +
Sbjct: 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV----------- 245
Query: 91 KKTLLDRVEFHESDLLA 107
E S++ +
Sbjct: 246 ------EGEVFASNVFS 256
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
K + + GCGNG+ + E +K+Y +DIN A++
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLE--FATKLYCIDINVIALKE 54
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Length = 389 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 3e-06
Identities = 42/197 (21%), Positives = 66/197 (33%), Gaps = 57/197 (28%)
Query: 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQN----MSESEIDVTPSIQQYIKSNFGF 667
PN G + L + AI E +QN ++EI V G
Sbjct: 60 GPNIG------------LLEL-REAIAEKLKKQNGIEADPKTEIMVLL----------G- 95
Query: 668 PIDINAEFIYADCSQSLFNKLVLCCILEGG------TLCFPAGSNGNYVSAARFLKANIV 721
+Q+ L L+ G T F + Y A V
Sbjct: 96 ------------ANQAFLM--GLSAFLKDGEEVLIPTPAFVS-----YAPAVILAGGKPV 136
Query: 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781
+PT E F++ L + T K + I+ P NPTG + + K++E I ++
Sbjct: 137 EVPTYEEDEFRLNVDELKKYV-TDKTRALIINSPC-NPTGAVLTKKDLEEIADFVVEHDL 194
Query: 782 RVVIDTAFSGLEFNYEG 798
V+ D + F Y+
Sbjct: 195 IVISDEVYE--HFIYDD 209
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 13/115 (11%), Positives = 40/115 (34%), Gaps = 22/115 (19%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
+ + + ++G + ++ I + E+ ++ + + N+ + L
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK------- 65
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGC------IPQILNPNPDAMSK 136
++++ ++ LA + D Q+ I I +IL ++
Sbjct: 66 --------EKIQVRLANGLAAFEETD-QVSVITIAGMGGRLIARILEEGLGKLAN 111
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} Length = 500 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 32/198 (16%), Positives = 69/198 (34%), Gaps = 28/198 (14%)
Query: 607 LSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPS---------I 657
L++ + P+ L+ + ++ S+ +A + + + + S I
Sbjct: 89 LALCDHPD--LLQREEIKTLFSADSISRAKQILAMIPGRATGA---YSHSQGIHGLRDAI 143
Query: 658 QQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG-GTL----CFPAGSNGNYVSA 712
I S GFP + + F+ S + + L E G L +P Y ++
Sbjct: 144 ASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPL-----YSAS 198
Query: 713 ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTI----NPTGLLYSNKE 768
+V G+ + + LE + + + + NPTG + + +
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEEN 258
Query: 769 IENILTVCAKYGARVVID 786
+I+ C G ++ D
Sbjct: 259 QYDIVKFCKNEGLVLLAD 276
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 9/86 (10%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
I K++ +A++G + ++ + S ++ + + + + L
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT------- 71
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHD 113
++++ + + LA D
Sbjct: 72 --------EQIDVRKGNGLAVIEKKD 89
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
+ + +L GNG I + ++ + +K+ G++I R ++ ++ N L+
Sbjct: 49 RKGKIIDLCSGNGIIPLLLSTR-TKAKIVGVEIQERLADMAKRSVAYNQLE--------- 98
Query: 90 EKKTLLDRVEFHESDLLAYCRDH 112
D++E E DL
Sbjct: 99 ------DQIEIIEYDLKKITDLI 115
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 27/123 (21%)
Query: 25 PDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQ 84
++ + V +LG G G +T+ +A ++V G++ + ++ L NAL
Sbjct: 228 GPEGVRGRQVLDLGAGYGALTLPLARMG--AEVVGVEDDLASVLSLQKGLEANAL----- 280
Query: 85 PIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASE 144
+ + SD+ + + + IV NP P + + + ++
Sbjct: 281 ------------KAQALHSDVDE-ALTEEARFDIIV------TNP-PFHVGGAVILDVAQ 320
Query: 145 EFL 147
F+
Sbjct: 321 AFV 323
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 53/193 (27%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
+ E+G G+ + +AEK+ KV +++ + N
Sbjct: 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRN---------------I 99
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLER---IVGCIPQILNP----NPDAMSKIITENA 142
E+ R+ ++ + I P P
Sbjct: 100 ERNNSNVRLVKSNGGIIK-----GVVEGTFDVIFS------APPYYDKPL-------GRV 141
Query: 143 SEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRL 202
E A+ G ++G + +EE + P G + + + + +
Sbjct: 142 LTERE-------AIGG---GKYGEEFSVKLLEEAFDHLNPGGKVALYLP--DKEKLLN-V 188
Query: 203 FERRGFRVDKLWQ 215
+ RG ++ +
Sbjct: 189 IKERGIKLGYSVK 201
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* Length = 375 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768
+ L A + E E G+ + L ++ + I+ NPTG +
Sbjct: 118 LYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTKMICINNAN-NPTGAVMDRTY 175
Query: 769 IENILTVCAKYGARVVIDTAFSGLEF 794
+E ++ + ++ GA ++ D +
Sbjct: 176 LEELVEIASEVGAYILSDEVYRSFSE 201
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 7 IFIP-EDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPR 65
+ P ED ++T + L R L+ K V +LG G IT + ++ + V D+N R
Sbjct: 3 WYEPGED-TYTLMDALEREG---LEMKIVLDLGTSTGVITEQLRKR---NTVVSTDLNIR 55
Query: 66 AIRISWINLYLNA 78
A+ + A
Sbjct: 56 ALESHRGGNLVRA 68
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-05
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 18 YEGLNR----HPDSILK------DKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRA 66
+ +R P+ +LK TV ++G G G+ +++ KVY +D+
Sbjct: 15 LDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74
Query: 67 IRI 69
+
Sbjct: 75 VNY 77
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 30/111 (27%)
Query: 11 EDWSFTFYEGLNR-HP-------------DSILKDKTVAELGCGNGWITIAIAEKWLPSK 56
+ F+ + R P D++ + +A++GCG G T+ +A + +
Sbjct: 13 LNLICDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQ 71
Query: 57 VYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107
V GLD I I N A + L +RV +
Sbjct: 72 VTGLDFLSGFIDI------FNRN---------ARQSGLQNRVTGIVGSMDD 107
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} Length = 361 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768
Y A+ ++V + + + +++ ++ V V I P NP G L + ++
Sbjct: 111 YEINAKKHGVSVVFSYLDE--NMCIDYEDIISKIDDVDS--VIIGNPN-NPNGGLINKEK 165
Query: 769 IENILTVCAKYGARVVIDTAFSGLEF 794
++L + + ++ID AF +EF
Sbjct: 166 FIHVLKLAEEKKKTIIIDEAF--IEF 189
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* Length = 385 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 42/178 (23%)
Query: 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDI 671
P +G IP L + A+ E F R+N + VTP + I + G
Sbjct: 65 APPAG------------IPEL-REALAEKFRREN----GLSVTPE--ETIVTVGG----- 100
Query: 672 NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF 731
SQ+LFN L + G + + +Y RF +V + T E GF
Sbjct: 101 ---------SQALFN-LFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGF 150
Query: 732 KMTEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVID 786
+ T + + ++ P NPTG +Y + +E + + ++ +V D
Sbjct: 151 VPD----PERVRRAITPRTKALVVNSPN-NPTGAVYPKEVLEALARLAVEHDFYLVSD 203
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIR 68
+ +LGCG G T + +++ + + G+D + +
Sbjct: 33 RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLE 71
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* Length = 546 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 717 KANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVC 776
V I + + ++ + L L+ + P+ NP + + +E + +
Sbjct: 217 ALEEVAINADPSLNWQYPDSELDK-LKDPAIKIFFCVNPS-NPPSVKMDQRSLERVRNIV 274
Query: 777 AKYGARVVI 785
A++ ++I
Sbjct: 275 AEHRPDLMI 283
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 Length = 389 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 6e-05
Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 48/181 (26%)
Query: 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDI 671
T G I L + I + + + D++P Q + +N
Sbjct: 75 TDPRG------------IYEL-REGIAKRIGERY----KKDISPD--QVVVTNGA----- 110
Query: 672 NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESE 728
Q+LFN + + G + + +VS + + T
Sbjct: 111 ---------KQALFN-AFMALLDPGDEVIVFSPV---WVSYIPQIILAGGTVNVVETFMS 157
Query: 729 VGFKMTEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVI 785
F+ + + +E K V I+ P NPTG++Y + +E ++ + K ++
Sbjct: 158 KNFQPS----LEEVEGLLVGKTKAVLINSPN-NPTGVVYRREFLEGLVRLAKKRNFYIIS 212
Query: 786 D 786
D
Sbjct: 213 D 213
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 8e-05
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 30/111 (27%)
Query: 11 EDWSFTFYEGLNRH-PDS-------------ILKDKTVAELGCGNGWITIAIAEKWLPSK 56
+ +++ L R P S + D +A++GCG G T+ +A+ + +
Sbjct: 13 FSFICNYFKLLKRQGPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADY-VKGQ 71
Query: 57 VYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107
+ G+D+ P I I N A K DRV+ +
Sbjct: 72 ITGIDLFPDFIEI------FNEN---------AVKANCADRVKGITGSMDN 107
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 8e-05
Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 27 SILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPI 86
K V + CG G TI A +V +DI+P I ++ N + +
Sbjct: 75 QSFKCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIA------ 126
Query: 87 YDAEKKTLLDRVEFHESDLL 106
D++EF D L
Sbjct: 127 ---------DKIEFICGDFL 137
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Length = 444 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 24/146 (16%)
Query: 717 KANIVNIPTESEVG---FKMTEKTLVTILE--TVKKPWVYISGPTINPTGLLYSNKEIEN 771
+I + + E G +++ + L + + + S PT NPTG + +++E+ +
Sbjct: 172 LPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPT-NPTGNVLTDEEMAH 230
Query: 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF--NVSLLGGLSL 829
+ + +Y ++ID A+ +YS + ++ N L LS
Sbjct: 231 LAEIAKRYDIPLIIDNAYG--MPFPNI------------IYSDAHLNWDNNTILCFSLSK 276
Query: 830 KMLTGALKFGFLVLNHPQLVDAFSSF 855
L G ++ G +V ++++A S+
Sbjct: 277 IGLPG-MRTGIIVA-DAKVIEAVSAM 300
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80
+ + V + GNG T +A L KVY D+ +A+ + L ++
Sbjct: 20 LDDESIVVDATMGNGNDTAFLAG--LSKKVYAFDVQEQALGKTSQRLSDLGIE 70
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 16/76 (21%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
+ T ++G G G ++IA+A++ + LD + I+ N
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKN--------------- 85
Query: 89 AEKKTLLDRVEFHESD 104
L DR++ + D
Sbjct: 86 IADANLNDRIQIVQGD 101
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 20/77 (25%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
+ + +LGCG GW E S V GLD++ + +
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLAR------------------- 81
Query: 89 AEKKTLLDRVEFHESDL 105
A + + +DL
Sbjct: 82 ARAAGPDTGITYERADL 98
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 20/77 (25%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
KTV +LGCG GW I AE KV G+D++ R +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEH-GAKKVLGIDLSERMLTE------------------- 82
Query: 89 AEKKTLLDRVEFHESDL 105
A++KT V + + +
Sbjct: 83 AKRKTTSPVVCYEQKAI 99
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Length = 350 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768
Y A R + + P+ ++G ++ P NP G L E
Sbjct: 102 YEDACRMYEHEVCFYPSNEDIGEADFSNMDF----------CWLCNPN-NPDGRLLQRTE 150
Query: 769 IENILTVCAKYGARVVIDTAFSGLEF 794
I +L V+D ++ + F
Sbjct: 151 ILRLL--NDHPDTTFVLDQSY--VSF 172
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 28/214 (13%), Positives = 58/214 (27%), Gaps = 67/214 (31%)
Query: 11 EDWSFTFYEGLNRHPDSIL------KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINP 64
+ W G + + ++ L + + + GCG G I ++++ V G D++P
Sbjct: 21 QRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDP 78
Query: 65 RAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIP 124
I A++ + DL
Sbjct: 79 ILIDY-------------------AKQD--FPEARWVVGDLSVD---------------- 101
Query: 125 QILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184
+ +F +S + ED A+ + G
Sbjct: 102 ----QISET-----------DFDLIVSAGNVMGFLAEDG-----REPALANIHRALGADG 141
Query: 185 IMIFNMGGRPG--QGVCKRLFERRGFRVDKLWQT 216
+ G G G + ER G ++ +++
Sbjct: 142 RAVIGFGAGRGWVFGDFLEVAERVGLELENAFES 175
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 Length = 406 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 30/137 (21%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 657 IQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGG------TLCFPAGSNGNYV 710
I + K G I + + A +++L + +L+ G +P Y
Sbjct: 87 IVEREKRKNGVDITPDDVRVTAAVTEALQL--IFGALLDPGDEILVPGPSYPP-----YT 139
Query: 711 SAARFLKANIVNIPTESEVGFKMT-EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769
+F V T E ++ + I T + + + P NPTG LY K +
Sbjct: 140 GLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKI--TDRTKAIAVINPN-NPTGALYDKKTL 196
Query: 770 ENILTVCAKYGARVVID 786
E IL + +Y V+ D
Sbjct: 197 EEILNIAGEYEIPVISD 213
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Length = 398 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 21/139 (15%)
Query: 657 IQQYIKSNFGFPIDINAEFIYADC--SQSLFNKLVLCCILEGG-------TLCFPAGSNG 707
I +++ + G NA+ +Y + SL + FP
Sbjct: 85 IAEFLNNTHG--THFNADNLYMTMGAAASLSI--CFRALTSDAYDEFITIAPYFPE---- 136
Query: 708 NYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767
Y A +V +P ++E F++ L + V I+ P NP+G +YS +
Sbjct: 137 -YKVFVNAAGARLVEVPADTE-HFQIDFDALEERI-NAHTRGVIINSPN-NPSGTVYSEE 192
Query: 768 EIENILTVCAKYGARVVID 786
I+ + + K +
Sbjct: 193 TIKKLSDLLEKKSKEIGRP 211
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 2e-04
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 17/46 (36%)
Query: 286 QPNQVKKIFKFLKNGFHEISSSLDLSFEDDSVADEKIPFLAYLASV 331
+ +KK+ +SL L + DDS P LA A++
Sbjct: 18 EKQALKKL-----------QASLKL-YADDSA-----PALAIKATM 46
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 3e-04
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 26 DSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQP 85
D + ++V + G GNG + + V DI+P AI + N
Sbjct: 47 DGNIGGRSVIDAGTGNGILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVS 105
Query: 86 IYDAEKKTLL 95
+ T +
Sbjct: 106 EISGKYDTWI 115
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} Length = 533 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 717 KANIVNIPTESEVGFKMTEKTL-VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTV 775
+ V++ + + +++ + ++K + + PT NPT + + I
Sbjct: 216 ELVEVDLHSYEKNDWEIEPNEIEKLKDPSIK--ALIVVNPT-NPTSKEFDTNALNAIKQA 272
Query: 776 CAKY 779
K
Sbjct: 273 VEKN 276
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 23 RHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
++ + DKTV + G G ++I + K YG++I+ ++
Sbjct: 16 KYCNESNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKK 61
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 3e-04
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81
++K TVA++G G+G + IA A K V DI+ ++ + N LN + +
Sbjct: 58 MVKPLTVADVGTGSGILAIA-AHKLGAKSVLATDISDESMTAAEENAALNGIYD 110
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
+ + +LG G G I +A+A + ++ +D P A+ ++ N A
Sbjct: 109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA----------- 157
Query: 90 EKKTLLDRVEFHESDLLA 107
+ + +SD +
Sbjct: 158 -----IKNIHILQSDWFS 170
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88
VA + CG +A+ P ++ G+D +P A+ +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRL--------------- 162
Query: 89 AEKKTLLDRVEFHESDLLA 107
A L ++ H D
Sbjct: 163 AAGHALAGQITLHRQDAWK 181
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 6e-04
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 27/143 (18%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
+ + +G G +T + +V ++I P +S ++ G
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELS-----RKVIEGLG---- 170
Query: 88 DAEKKTLLDRVEFHESDLLAYC-RDHDI--------QLERIVGCIPQILNPNPDAMSKII 138
+D V D + D+ R+ I + + + +
Sbjct: 171 -------VDGVNVITGDETVIDGLEFDVLMVAALAEPKRRVFRNIHRYV--DTETRIIYR 221
Query: 139 TENASEEFLYSLSNYCALQGFVE 161
T LY+ + + GF
Sbjct: 222 TYTGMRAILYAPVSDDDITGFRR 244
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Length = 407 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 31/188 (16%), Positives = 51/188 (27%), Gaps = 57/188 (30%)
Query: 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDI 671
T G + + + A V I +
Sbjct: 75 TEYRG------------DLGI-RDLLAPRLAAFT----GAPVDAR-DGLIITPGT----- 111
Query: 672 NAEFIYADCSQSLFNKLVLCCILEGG------TLCFPAGSNGNYVSAARFLKANIVNIP- 724
+LF + + G + A F + +V +
Sbjct: 112 ---------QGALFL--AVAATVARGDKVAIVQPDYFA-----NRKLVEFFEGEMVPVQL 155
Query: 725 ---TESEVGFKMTEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK 778
+ E + +T LE S P NP G++YS +EI I + A+
Sbjct: 156 DYVSADETRAGLD----LTGLEEAFKAGARVFLFSNPN-NPAGVVYSAEEIGQIAALAAR 210
Query: 779 YGARVVID 786
YGA V+ D
Sbjct: 211 YGATVIAD 218
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 6e-04
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 28 ILKDKTVAELGCGNGWITI-AIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEK 82
+ V +LG G+G + AIA + L K G+DI+P + + N N + +
Sbjct: 118 LRPGDKVLDLGTGSG---VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPR 170
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 6e-04
Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 48/181 (26%)
Query: 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDI 671
P +G P L + AI + R N + + +N G
Sbjct: 64 GPAAG------------EPRL-REAIAQKLQRDN----GLCYGAD--NILVTNGG----- 99
Query: 672 NAEFIYADCSQSLFNKLVLCCILEGGTLCFPA---GSNGNYVSAARFLKANIVNIPTESE 728
QS+FN L+L I G + PA S Y + + V +PT E
Sbjct: 100 ---------KQSIFN-LMLAMIEPGDEVIIPAPFWVS---YPEMVKLAEGTPVILPTTVE 146
Query: 729 VGFKMTEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVI 785
FK++ + T K + + P+ NPTG++Y+ E+ I V + G V+
Sbjct: 147 TQFKVS----PEQIRQAITPKTKLLVFNTPS-NPTGMVYTPDEVRAIAQVAVEAGLWVLS 201
Query: 786 D 786
D
Sbjct: 202 D 202
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* Length = 427 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 39/158 (24%)
Query: 657 IQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGG------TLCFPAGSNGNYV 710
I Y P++ + + CSQ++ L + G F Y
Sbjct: 105 IASYYHCP-EAPLEAKDVILTSGCSQAIDL--CLAVLANPGQNILVPRPGFSL-----YK 156
Query: 711 SAARFLKANIVNIPTESEVGFK---------MTEKTLVTILETVKKPWVYISGPTINPTG 761
+ A + + E ++ + EKT + + P+ NP G
Sbjct: 157 TLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKT---------ACLIVNN-PS-NPCG 205
Query: 762 LLYSNKEIENILTVCAKYGARVVID-----TAFSGLEF 794
++S + ++ IL V A+ ++ D FS ++
Sbjct: 206 SVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKY 243
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 7e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRI 69
V E GCG G T+ +A+ +++ +DI+P ++
Sbjct: 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK 76
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 20/92 (21%)
Query: 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91
V ++G G+G I ++IA V +D++ A+ ++ N
Sbjct: 32 TRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA------------ 79
Query: 92 KTLLDRVEFHESDLLAYCRDHDIQLER---IV 120
V++ +D + + + + IV
Sbjct: 80 -----VVDWAAADGIEWLIERAERGRPWHAIV 106
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 20/151 (13%), Positives = 49/151 (32%), Gaps = 39/151 (25%)
Query: 657 IQQYIKSNFGFPIDINAEFIYAD------CSQSLFNKLVLCCILEGG------TLCFPAG 704
+ + +++F ++ + + + S + + I + G FP
Sbjct: 84 VATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILM--AITAICDAGDYALVPQPGFPH- 140
Query: 705 SNGNYVSAARFLKANIVNIPTESEVGFKM---------TEKTLVTILETVKKPWVYISGP 755
Y + + + E ++ +KT K + + P
Sbjct: 141 ----YETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT---------KLLIVTN-P 186
Query: 756 TINPTGLLYSNKEIENILTVCAKYGARVVID 786
+ NP G +S K +E+I+ + + + D
Sbjct: 187 S-NPCGSNFSRKHVEDIVRLAEELRLPLFSD 216
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 903 | |||
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 100.0 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 100.0 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 100.0 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 100.0 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 100.0 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 100.0 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 100.0 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 100.0 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 100.0 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 100.0 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 100.0 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 100.0 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 100.0 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 100.0 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 100.0 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 100.0 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 100.0 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 100.0 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 100.0 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 100.0 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 100.0 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 100.0 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 100.0 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 100.0 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 100.0 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.98 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.98 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.98 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.98 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.98 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.98 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.98 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.97 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.97 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.97 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.97 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.97 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.97 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.97 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.97 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.97 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.97 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.97 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.97 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.97 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.97 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.97 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.97 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.97 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.97 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.97 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.97 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.97 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.97 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.97 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.97 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.97 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.97 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.96 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.96 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.96 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.96 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.96 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.96 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.96 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.93 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.96 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.96 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.95 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.95 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.95 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.95 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.94 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.93 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.9 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.9 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.9 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.89 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.89 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.89 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.89 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.88 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.88 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.88 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.88 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.88 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.88 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.87 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.87 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.87 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.87 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.87 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.86 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.86 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.86 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.86 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.86 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.86 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.85 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.85 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.85 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.85 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.85 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.85 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.85 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.85 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.84 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.84 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.84 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.84 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.84 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.84 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.84 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.84 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.84 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.84 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.83 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.83 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.83 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.83 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.82 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.82 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.82 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.82 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.81 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.81 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.81 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.81 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.81 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.81 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.81 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.81 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.81 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.8 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.8 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.8 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.8 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.8 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.8 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.8 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.8 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.8 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.8 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.79 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.79 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.79 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.79 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.79 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.79 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.79 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.78 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.78 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.78 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.78 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.78 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.78 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.78 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.78 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.78 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.78 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.77 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.77 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.77 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.77 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.77 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.77 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.76 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.76 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.76 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.76 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.76 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.76 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.76 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.75 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.75 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.75 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.75 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.75 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.75 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.75 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.75 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.74 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.74 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.73 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.73 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.73 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.73 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.72 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.72 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.72 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.72 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.72 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.71 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.71 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.71 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.71 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.7 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.7 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.7 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.69 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.68 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.68 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.67 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.66 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.66 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.64 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.62 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.62 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.62 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.62 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.62 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.61 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.61 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.59 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.58 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.57 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.57 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.57 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.56 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.55 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.55 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.55 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.55 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.55 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.55 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.55 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.54 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.54 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.53 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.53 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.53 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.53 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.52 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.28 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.52 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.51 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.49 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.49 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.49 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.49 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.49 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.49 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.49 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.48 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.48 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.48 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.48 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.48 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.48 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.47 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.47 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.47 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.47 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.46 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.46 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.46 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.45 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.45 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.45 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.45 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.45 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.44 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.44 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.44 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.43 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.43 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.43 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.43 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.42 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.42 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.42 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.42 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.42 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.42 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.41 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.41 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.41 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.41 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.41 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.41 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.41 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.41 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.41 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.41 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.41 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.41 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.4 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.4 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.4 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.4 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.4 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.4 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.39 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.39 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.39 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.39 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.38 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.38 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.38 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.38 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.38 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.38 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.38 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.37 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.37 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.37 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.36 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.36 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.36 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.36 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.36 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.36 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.36 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.36 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.35 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.35 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.35 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.35 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.34 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.34 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.34 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.34 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.34 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.34 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.33 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.33 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.33 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.33 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.33 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.32 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.32 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.31 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.31 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.31 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.31 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.31 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.31 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.31 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.31 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.31 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.31 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.31 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.3 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.3 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.3 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.3 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.3 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.29 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.29 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.29 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.29 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.29 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.29 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.29 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.28 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.28 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.28 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.28 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.27 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.27 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.26 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.26 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.26 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.26 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.26 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.25 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.25 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.24 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.24 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.24 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.24 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.24 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.24 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.24 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.24 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.23 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.23 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.22 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.22 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.22 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.22 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.22 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.22 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.22 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.22 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.22 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.22 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.22 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.21 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.21 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.21 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.21 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.21 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.21 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.21 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.2 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.2 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.2 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.2 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.2 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.2 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.2 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.19 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.19 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.19 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.19 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.19 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.19 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.19 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.18 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.18 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.18 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.17 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.17 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.16 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.16 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.16 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.16 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.16 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.15 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.15 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.14 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.14 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.13 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.12 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.12 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.11 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.1 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.1 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.1 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.1 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.1 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.09 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.09 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.08 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.07 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.07 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.06 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.05 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.05 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.04 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.03 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.03 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.03 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.03 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.02 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.01 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.0 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.0 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.98 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.98 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.97 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.97 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.96 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.95 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.95 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.95 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.95 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.94 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.93 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.92 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.91 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.9 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.9 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.9 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.87 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.87 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.86 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.86 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.84 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.8 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.8 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.79 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.76 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 98.76 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.76 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.74 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 98.74 |
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=338.27 Aligned_cols=295 Identities=15% Similarity=0.202 Sum_probs=245.1
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++..++.+.+..+...... ....++++|+|+.|+|++++|+.+.+++.+.+.. |....|.+++|+++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~ 82 (385)
T 1b5p_A 4 LSRRVQAMKPSATVAVNAKALE-LRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKFR 82 (385)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHH-HHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhHHhhcCcchHHHHHHHHHH-HHhcCCCEEEecCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4566777888887766642111 1124678999999999998889999998887753 4445688999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|++.+++ +|++|+|+++++..++.++++|||+|+++.|+|+.|...++..|++++.++++++++|.+|++++++++
T Consensus 83 ~~~g~~~~~~-~i~~t~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 161 (385)
T 1b5p_A 83 RENGLSVTPE-ETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI 161 (385)
T ss_dssp HTTCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTC
T ss_pred HHhCCCCChH-HEEEcCChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhc
Confidence 9899887777 999999999999999999999999999999999999999999999999999986567899999999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.++|.+++++|+++|+++|++||+||+|+++.|++ .. .+ +..++. ++++
T Consensus 162 ~~~~-~~v~~~~p~-NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~--~~----~~~~~~-----~~~i 227 (385)
T 1b5p_A 162 TPRT-KALVVNSPN-NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EH--FS----PGRVAP-----EHTL 227 (385)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CC--CC----GGGTCT-----TTEE
T ss_pred CCCC-EEEEEeCCC-CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CC--CC----HHHcCC-----CCEE
Confidence 7665 589999998 999999999999999999999999999999999988876 32 11 222221 4799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.||++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .. +.-.++++++++.|+++++.
T Consensus 228 ~~~s~SK~~~~~G~RiG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~ 302 (385)
T 1b5p_A 228 TVNGAAKAFAMTGWRIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEALT--NQ--EASRAFVEMAREAYRRRRDL 302 (385)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHH--CH--HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEechhhcCCcccceEEEEeCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHh--CC--CcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 9888877543 56788999999999994 20 00135788888899998887
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 303 l~ 304 (385)
T 1b5p_A 303 LL 304 (385)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=337.60 Aligned_cols=300 Identities=13% Similarity=0.031 Sum_probs=231.4
Q ss_pred hhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC---C--CCCcHHHHHHHHHHH-H-----ccCCCCCchHHHHHH
Q 043334 589 TEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS---F--LPIPSLVKAAIFESF-A-----RQNMSESEIDVTPSI 657 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p---~--~~~p~~v~~al~~al-~-----~y~~~~G~~~lr~al 657 (903)
.++..++++.+..+....+ ....+++|+|++|.+ + +++++.+.++.. .+ . +|.+..|.+++|+++
T Consensus 6 ~~~~~~~~~~i~~~~~~~~---~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~~~~Y~~~~G~~~lr~ai 81 (405)
T 3k7y_A 6 SSLENIEVDNILKTAREFK---EDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYKEKPYLLGNGTEDFSTLT 81 (405)
T ss_dssp GGCCCCCCCHHHHHHHHHT---TSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCCCCCCCTTSSCHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHh---cCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCCCCCCCCCCCcHHHHHHH
Confidence 4667778888777775432 134578999999973 2 346788888866 43 1 367788999999999
Q ss_pred HHHHHhhcCCCCCCCC-cEEecCchHHHHHHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccC
Q 043334 658 QQYIKSNFGFPIDINA-EFIYADCSQSLFNKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734 (903)
Q Consensus 658 a~~l~~~~G~~~~pe~-~I~vt~Gs~~al~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld 734 (903)
++++.+.++....+++ +|++|+|+++++..++.++++ | |+|++++|+|+.|...++..|++++.+|+.++++|.+|
T Consensus 82 a~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d 160 (405)
T 3k7y_A 82 QNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGFNLKYINFFDYNLIDIN 160 (405)
T ss_dssp HHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTCEEEEECCEETTTTEEC
T ss_pred HHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCCeEEEEeccccccCCcC
Confidence 9999876666555552 369999999999999999988 8 99999999999999999999999999999544579999
Q ss_pred HHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 735 EKTLVTILETV-KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 735 ~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
++.+++.+++. .++++++++|.|||||.++|.+++++|+++|+++|++||+||+|.++.|++...+..+ +..+..
T Consensus 161 ~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~----~~~~~~ 236 (405)
T 3k7y_A 161 YDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLL----IRKFEE 236 (405)
T ss_dssp HHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHH----HHHHHT
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHH----HHHHHh
Confidence 99999998753 2346766665359999999999999999999999999999999999988642211111 222222
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEEe--CcHHHHHHHH----hCC--CCCCCcHHHHHHHHHHHhcccc-cchhHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLVL--NHPQLVDAFS----SFP--GLSKPHSTVRYAIKKLLGLRER-KARDLM 884 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~~li~~l~----~~~--~~~~~s~~~Q~aa~~~L~~~~~-~~~~~~ 884 (903)
. .+++|+++||||+|+++|||+||+++ +++++++.+. +.. ..++++...|.++..+|. ++ ..+.+.
T Consensus 237 ~---~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~--~~~l~~~~~ 311 (405)
T 3k7y_A 237 K---NIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLN--NQNLKLNWI 311 (405)
T ss_dssp T---TCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHH--CHHHHHHHH
T ss_pred c---CCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhC--CHHHHHHHH
Confidence 2 15899999999999999999999864 4444655543 222 255678899999999995 22 113356
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043334 885 NAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 885 ~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.++++.|++||+.++
T Consensus 312 ~~l~~~~~~~~~~R~~l~ 329 (405)
T 3k7y_A 312 KELSQLSQRITNNRILFF 329 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 778888999999999885
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-34 Score=320.97 Aligned_cols=298 Identities=15% Similarity=0.179 Sum_probs=245.3
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~ 664 (903)
++++..++++++..+...........++++|+|+.|++++++|+.+.+++.+.+. .|....|..++++++++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~ 82 (396)
T 3jtx_A 3 NTLLKQLKPYPFARLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRR 82 (396)
T ss_dssp HHHHHHCCSCHHHHHHHHTTTCCCCTTCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTTCCHHHHHHHHHHHHHH
T ss_pred hhhhccCCCChHHHHHHHHHhhhhccCCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCCCcHHHHHHHHHHHHHh
Confidence 5566778888888777543322235688999999999999999999999988754 3566678899999999999999
Q ss_pred cCCC-CCCCCcEEecCchHHHHHHHHHHhccCC-----CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH
Q 043334 665 FGFP-IDINAEFIYADCSQSLFNKLVLCCILEG-----GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL 738 (903)
Q Consensus 665 ~G~~-~~pe~~I~vt~Gs~~al~~ll~~l~~pG-----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L 738 (903)
+|.+ .+++++|++|+|+++++..++.+++++| |.|+++.|+|..+...++..|++++.++++ +++|.+|++++
T Consensus 83 ~g~~~~~~~~~i~~t~g~~~al~~~~~~~~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~g~~~d~~~l 161 (396)
T 3jtx_A 83 YDGLTVDADNEILPVLGSREALFSFVQTVLNPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCP-APSFNPDWRSI 161 (396)
T ss_dssp TTTCCCCTTTSEEEESSHHHHHHHHHHHHCCC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECC-TTTCCCCGGGS
T ss_pred cCCCCCCCCCeEEEcCCcHHHHHHHHHHHhCCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecC-CCCCccCHHHH
Confidence 9986 5554489999999999999999999997 799999999999999999999999999994 46888999999
Q ss_pred HHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 739 VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 739 ~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
++++++++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... .+.......+... .
T Consensus 162 ~~~~~~~~-~~v~l~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~~~~~~~---~ 234 (396)
T 3jtx_A 162 SEEVWKRT-KLVFVCSPN-NPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKP--LGCLQAAAQLGRS---R 234 (396)
T ss_dssp CHHHHHTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCC--CCHHHHHHHTTCC---C
T ss_pred HHhhccCc-EEEEEECCC-CCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--chHHhhhhhcccc---c
Confidence 99888766 589999997 999999999999999999999999999999999998887321 2211111112211 1
Q ss_pred CceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLES 896 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~ 896 (903)
+++++++||||.|+++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. .. +++.+.++.+++
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~------~~~~~~~~~~~~ 305 (396)
T 3jtx_A 235 QKLLMFTSLSKRSNVPGLRSGFVAGDAE-LLKNFLLYRTYHGSAMSIPVQRASIAAWD--DE------QHVIDNRRLYQE 305 (396)
T ss_dssp TTEEEEEESTTTSSCGGGCCEEEEECHH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHH--CC------HHHHHHHHHHHH
T ss_pred CcEEEEeccccccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHhC--CH------HHHHHHHHHHHH
Confidence 5899999999999999999999999887 9998887654 67789999999999995 22 567788888888
Q ss_pred HHHHHh
Q 043334 897 RSKRLK 902 (903)
Q Consensus 897 Rr~~l~ 902 (903)
+++.+.
T Consensus 306 ~~~~l~ 311 (396)
T 3jtx_A 306 KFERVI 311 (396)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=319.72 Aligned_cols=301 Identities=13% Similarity=0.060 Sum_probs=236.9
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCC---CCCCCCc--HHHHHHHHHHHHc-----cCCCCCchHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVD---QSFLPIP--SLVKAAIFESFAR-----QNMSESEIDVTPS 656 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g---~p~~~~p--~~v~~al~~al~~-----y~~~~G~~~lr~a 656 (903)
+++++..++++.+..+..... ....+++|||++| +|+.++| +.+.+++.+.+.. |....|.+++|++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~---~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ 100 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFN---ADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLPRGYLPIDGIAAYDAS 100 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHH---HCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCCCCCCCTTCCHHHHHH
T ss_pred HhhcCCcCCCChHHHHHHHHH---hcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCCCCCCCCCCcHHHHHH
Confidence 677889999999988875432 1345689999999 6766544 8999999888764 4556789999999
Q ss_pred HHHHHHhhcCCCCCCCC-cEEecCchHHHHHHH--HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCccc
Q 043334 657 IQQYIKSNFGFPIDINA-EFIYADCSQSLFNKL--VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKM 733 (903)
Q Consensus 657 la~~l~~~~G~~~~pe~-~I~vt~Gs~~al~~l--l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~l 733 (903)
+++++....+...+++. +|++|+|+++++..+ +.++++|||+|++++|+|.+|...++..|++++.+|+.++++|.+
T Consensus 101 ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~ 180 (420)
T 4f4e_A 101 VQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGV 180 (420)
T ss_dssp HHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEE
T ss_pred HHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCcc
Confidence 99999876554334432 699999999999998 456789999999999999999999999999999999954457889
Q ss_pred CHHHHHHHhh---cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 734 TEKTLVTILE---TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 734 d~~~L~~~l~---~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
|++.+++.++ +++ .++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .. .+..
T Consensus 181 d~~~l~~~l~~~~~~~-~~v~i~~p~-NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~-~~----~~~~ 253 (420)
T 4f4e_A 181 NFDGMLAALNGYEPGT-IVVLHACCH-NPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEAD-AA----AVRL 253 (420)
T ss_dssp CHHHHHHHHTTCCTTC-EEEEECSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGG-GH----HHHH
T ss_pred CHHHHHHHHHhCCCCC-EEEEeCCCC-CCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchh-hH----HHHH
Confidence 9999999997 333 488888997 999999999999999999999999999999999999875321 01 1222
Q ss_pred hccCCCCCCceEEEccCchhcccccceeeEEEe--CcHHHHHHH----HhC--CCCCCCcHHHHHHHHHHHhccccc-ch
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL--NHPQLVDAF----SSF--PGLSKPHSTVRYAIKKLLGLRERK-AR 881 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~~li~~l----~~~--~~~~~~s~~~Q~aa~~~L~~~~~~-~~ 881 (903)
+.... +++++++||||+||++|+|+||+++ ++.++++.+ ... ...++++...|.++..+|. ++. .+
T Consensus 254 ~~~~~---~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~l~~ 328 (420)
T 4f4e_A 254 FAAAN---LNVFVSSSFSKSFSLYGERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLA--SPELRA 328 (420)
T ss_dssp HHHTT---CCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHH--CHHHHH
T ss_pred HHhcC---CCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHhc--CHHHHH
Confidence 22222 5899999999999999999999864 444455443 222 2356678899999998884 221 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 043334 882 DLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 882 ~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.++++++++++.|++|++.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~l~ 349 (420)
T 4f4e_A 329 SWVQELGEMRDRIRAMRNGLV 349 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 245778999999999999875
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.25 Aligned_cols=298 Identities=9% Similarity=0.123 Sum_probs=246.1
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc------cCCCCCchHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR------QNMSESEIDVTPSIQQY 660 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~------y~~~~G~~~lr~ala~~ 660 (903)
+++++..++++.++.+..... ++++|+|+.|+|++++|+.+.+++.+.+.. |....|.++++++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 79 (422)
T 3fvs_A 6 QARRLDGIDYNPWVEFVKLAS------EHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASF 79 (422)
T ss_dssp SCGGGTTCCCCHHHHHHHHHH------TSCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCTTCCHHHHHHHHHH
T ss_pred HHHHhhccCccHHHHHHHHhh------cCCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCCCCCHHHHHHHHHH
Confidence 456777888888888775432 358999999999999999999999988753 44456889999999999
Q ss_pred HHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC----------CCC
Q 043334 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES----------EVG 730 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~----------~~~ 730 (903)
+.+.+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.++++. +++
T Consensus 80 ~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~ 159 (422)
T 3fvs_A 80 FGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 159 (422)
T ss_dssp HHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGG
T ss_pred HHHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccC
Confidence 9999998887623899999999999999999999999999999999999999999999999999975 246
Q ss_pred cccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 731 f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
|.+|++++++++++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+++.|++... .+ +..
T Consensus 160 ~~~d~~~l~~~~~~~~-~~v~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~ 231 (422)
T 3fvs_A 160 WQLDPMELAGKFTSRT-KALVLNTPN-NPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQH--IS----IAS 231 (422)
T ss_dssp SBCCHHHHHTTCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGG
T ss_pred CCCCHHHHHhhcCCCc-eEEEECCCC-CCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC--CC----hhh
Confidence 8899999999998765 589999998 999999999999999999999999999999999999987543 11 222
Q ss_pred hccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHH
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVA 888 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~ 888 (903)
++.. .+++++++||||.||++|+|+||++++++ +++.+..... ..+++.+.|.++..+|...........++++
T Consensus 232 ~~~~---~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 307 (422)
T 3fvs_A 232 LPGM---WERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 307 (422)
T ss_dssp STTT---GGGEEEEEEHHHHHTCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHH
T ss_pred cccc---cCcEEEEecchhccCCccceEEEEEeCHH-HHHHHHHHHhhccCCCCcHHHHHHHHHHhhccccccchHHHHH
Confidence 2221 15899999999999999999999999987 8888876543 6778899999999999410000001235677
Q ss_pred HHHHHHHHHHHHHh
Q 043334 889 EHIRNLESRSKRLK 902 (903)
Q Consensus 889 ~~r~~y~~Rr~~l~ 902 (903)
++++.++++++.+.
T Consensus 308 ~~~~~~~~~~~~l~ 321 (422)
T 3fvs_A 308 QFPQAMQRCRDHMI 321 (422)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888764
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=311.42 Aligned_cols=293 Identities=17% Similarity=0.244 Sum_probs=243.6
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+++..++++.+..+..... ..++.|+|+.|.+++++++.+.+++.+.+.. |....|..++++++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 77 (389)
T 1gd9_A 3 LSDRLELVSASEIRKLFDIAA-----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLK 77 (389)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH-----TCSSCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhHhHhCChhHHHHHHHHHh-----hhcCeEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 467777888888887775332 1257999999999988899999999888754 4445578999999999999
Q ss_pred hhcCCCCCCCCc-EEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 663 SNFGFPIDINAE-FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 663 ~~~G~~~~pe~~-I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
+.+|.+.+++ + |++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++.+++|.+|++++++.
T Consensus 78 ~~~g~~~~~~-~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 156 (389)
T 1gd9_A 78 KQNGIEADPK-TEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKY 156 (389)
T ss_dssp HHHCCCCCTT-TSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHH
T ss_pred HHhCCCCCCC-CeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHh
Confidence 9889876666 7 9999999999999999999999999999999999999999999999999998655788999999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++|++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.+++... .+ +..+++. .+++
T Consensus 157 l~~~~-~~v~~~~~~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~~~~~---~~~~ 225 (389)
T 1gd9_A 157 VTDKT-RALIINSPC-NPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH--YS----IASLDGM---FERT 225 (389)
T ss_dssp CCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CC----GGGSTTC---GGGE
T ss_pred cCcCc-eEEEEECCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCC--CC----HhhccCC---CCCE
Confidence 97655 588999997 999999999999999999999999999999999988876522 11 1222221 1479
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ ... ..++++++++.++++++
T Consensus 226 i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~~---~~~~~~~~~~~~~~~~~ 299 (389)
T 1gd9_A 226 ITVNGFSKTFAMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFIQYAAAKALK--DER---SWKAVEEMRKEYDRRRK 299 (389)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHTTTTCSCCHHHHHHHHHHHT--CHH---HHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhcCCcccceEEEEECHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHh--CCC---cchHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 9998876543 56788999999999994 221 12377888888888888
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 300 ~l~ 302 (389)
T 1gd9_A 300 LVW 302 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=323.76 Aligned_cols=290 Identities=11% Similarity=0.141 Sum_probs=240.3
Q ss_pred CCCCHHHHHHHHhhhh---ccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhc
Q 043334 594 FSRSAISVLNSAELSI---TETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNF 665 (903)
Q Consensus 594 l~~s~i~~l~~a~~a~---~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~ 665 (903)
++++.+..+.....+. .+..++++|+|+.|.|++++|+.+.+++.+++.. |....|.+++++++++++.+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~ 112 (447)
T 3b46_A 33 TAKDVWSLTNEAAAKAANNSKNQGRELINLGQGFFSYSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIY 112 (447)
T ss_dssp CCCCHHHHHHHHHHHHCCC---TTSCCEECCCCSCSSCCCHHHHHHHHHHTTSGGGGSCCCTTCCHHHHHHHHHHHTTTT
T ss_pred cCccHHHHHHHHHHhhccchhccCCCeEEccCCCCCCCCCHHHHHHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 6677777777533110 0125678999999999999999999999888653 4556688999999999999988
Q ss_pred CCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC----------CcccCH
Q 043334 666 GFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV----------GFKMTE 735 (903)
Q Consensus 666 G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~----------~f~ld~ 735 (903)
|.+.+++ +|++|+|+++++..++.++++|||+|++++|+|..|...++..|++++.+|++.++ +|.+|+
T Consensus 113 g~~~~~~-~v~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 191 (447)
T 3b46_A 113 NTELKAE-NVTVTTGANEGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDF 191 (447)
T ss_dssp TSCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECH
T ss_pred CCCCChh-hEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCH
Confidence 9887777 99999999999999999999999999999999999999999999999999986542 688999
Q ss_pred HHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh-ccC
Q 043334 736 KTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL-YSS 814 (903)
Q Consensus 736 ~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l-~~~ 814 (903)
++|++.+++++ ++|++++|+ ||||.++|.+++++|+++|+++|++||+||+|.++.|++... ++ ..+ .+.
T Consensus 192 ~~l~~~l~~~~-~~v~l~~p~-nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~---~~----~~~~~~~ 262 (447)
T 3b46_A 192 EQFEKAITSKT-KAVIINTPH-NPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFT---RI----ATLSPEI 262 (447)
T ss_dssp HHHHTTCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC---CG----GGSCHHH
T ss_pred HHHHHhhccCC-eEEEEeCCC-CCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCc---CH----HHcCCCC
Confidence 99999987655 589999997 999999999999999999999999999999999999887332 11 112 111
Q ss_pred CCCCCceEEEccCchhcccccceeeEEEe-CcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHH
Q 043334 815 TNSSFNVSLLGGLSLKMLTGALKFGFLVL-NHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHI 891 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~GlRiG~lv~-~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r 891 (903)
.+++++++|+||.|+++|||+||+++ +++ +++.+..... ..+++++.|.++..+|+ .. ..++++++++
T Consensus 263 ---~~~~i~i~S~sK~~~~~G~riG~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~a~~~aL~--~~---~~~~~~~~~~ 333 (447)
T 3b46_A 263 ---GQLTLTVGSAGKSFAATGWRIGWVLSLNAE-LLSYAAKAHTRICFASPSPLQEACANSIN--DA---LKIGYFEKMR 333 (447)
T ss_dssp ---HTTEEEEEEHHHHTTCTTSCCEEEECSCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHH--HH---HHHTHHHHHH
T ss_pred ---CCcEEEEecCchhcCCcchhhEEEEeCCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHh--CC---cchHHHHHHH
Confidence 14899999999999999999999999 766 9998877543 66788999999999994 22 1246788899
Q ss_pred HHHHHHHHHHh
Q 043334 892 RNLESRSKRLK 902 (903)
Q Consensus 892 ~~y~~Rr~~l~ 902 (903)
+.|++|++.+.
T Consensus 334 ~~~~~~~~~l~ 344 (447)
T 3b46_A 334 QEYINKFKIFT 344 (447)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998875
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=317.98 Aligned_cols=297 Identities=13% Similarity=0.170 Sum_probs=243.6
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~ 662 (903)
|+++..++++.++.+... ..++++|+|+.|+|++++|+.+.+++.+.+.. |....|..++++++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~------~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 75 (410)
T 3e2y_A 2 AKRIEGLDSNVWVEFTKL------AADPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYG 75 (410)
T ss_dssp CGGGTTCCCCHHHHTTTT------TTSTTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCTTCCHHHHHHHHHHHH
T ss_pred chhhccCCccHHHHHHHH------hcCCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCCCChHHHHHHHHHHHH
Confidence 356677777877776532 24568999999999999999999999988753 5556678999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC---------CCCccc
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES---------EVGFKM 733 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~---------~~~f~l 733 (903)
+.+|.+.+++++|++|+|+++++..++.+++++||.|+++.|+|..+...++..|++++.++++. +++|.+
T Consensus 76 ~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~ 155 (410)
T 3e2y_A 76 KIYQRQIDPNEEILVAVGAYGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTF 155 (410)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEEC
T ss_pred HHhCCCCCCCCCEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcC
Confidence 99998887733999999999999999999999999999999999999999999999999999863 246779
Q ss_pred CHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 734 TEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 734 d~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
|++++++++++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+..
T Consensus 156 d~~~l~~~~~~~~-~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~~~~ 227 (410)
T 3e2y_A 156 DPRELESKFSSKT-KAIILNTPH-NPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTH--VK----IATLPG 227 (410)
T ss_dssp CHHHHHTTCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGGSTT
T ss_pred CHHHHHhhcCCCc-eEEEEeCCC-CCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCC--CC----HHHcCC
Confidence 9999999987655 589999998 999999999999999999999999999999999999887543 12 222222
Q ss_pred CCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHI 891 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r 891 (903)
. .+++++++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|...........+++++++
T Consensus 228 ~---~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~ 303 (410)
T 3e2y_A 228 M---WERTITIGSAGKTFSVTGWKLGWSIGPAH-LIKHLQTVQQNSFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLP 303 (410)
T ss_dssp C---GGGEEEEEEHHHHSSCGGGCCEEEECCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHH
T ss_pred c---cCeEEEEecchhhcCCCCceEEEEEECHH-HHHHHHHHHHhhccCCChHHHHHHHHHHHhhhccccchHHHHHHHH
Confidence 2 25899999999999999999999999987 8888876543 6778999999999999410000001135677888
Q ss_pred HHHHHHHHHHh
Q 043334 892 RNLESRSKRLK 902 (903)
Q Consensus 892 ~~y~~Rr~~l~ 902 (903)
+.++++++.+.
T Consensus 304 ~~~~~~~~~l~ 314 (410)
T 3e2y_A 304 KELEVKRDRMV 314 (410)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887764
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.11 Aligned_cols=293 Identities=15% Similarity=0.146 Sum_probs=233.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHH------------H---HHHHHHHHHccCCCCCch
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSL------------V---KAAIFESFARQNMSESEI 651 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~------------v---~~al~~al~~y~~~~G~~ 651 (903)
+|+++..++++.++.+..... ..++++|+|+.|.|+...++. + .+... ...+|....|++
T Consensus 7 ~s~~~~~~~~~~~~~~~~~~~----~~~~~~i~l~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~~~G~~ 81 (425)
T 2r2n_A 7 ITAASAARNPSPIRTMTDILS----RGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMK-RALQYSPSAGIP 81 (425)
T ss_dssp SCHHHHTCCCCSGGGHHHHHH----HSCTTCEECCCCCCCGGGCSEEEEEEEETTSCCEEECHHHHH-HHTSCCCTTCCH
T ss_pred HHHHHhcCCCchHHHHHHHhh----cCCCCeEEcCCcCCCchhCCHHHHHHHHhhcccccccccchh-hhcCCCCCCCCH
Confidence 677888888888887775432 124679999999998543321 0 11122 234688889999
Q ss_pred HHHHHHHHHHHhhcCCCCCC------CCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecC
Q 043334 652 DVTPSIQQYIKSNFGFPIDI------NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPT 725 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~p------e~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~ 725 (903)
++|+++++++++.+|++.++ .++|++|+|+++++..++.++++|||+|++++|+|+.+...++..|++++.+|+
T Consensus 82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~ 161 (425)
T 2r2n_A 82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSLHPLGCNIINVAS 161 (425)
T ss_dssp HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHGGGTCEEEEECE
T ss_pred HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeCc
Confidence 99999999999999987642 128999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcccCHHHHHHHhhc-----------CCCcEEEE-ECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc
Q 043334 726 ESEVGFKMTEKTLVTILET-----------VKKPWVYI-SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLE 793 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~-----------~~~~~vil-~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~ 793 (903)
+. + .+|++.|++.++. ...++|++ ++|+ ||||.+++.+++++|+++|+++|++||+||+|+++.
T Consensus 162 ~~-~--~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~-NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~ 237 (425)
T 2r2n_A 162 DE-S--GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGN-NPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQ 237 (425)
T ss_dssp ET-T--EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGB
T ss_pred CC-C--CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCc-CCCCCcCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 64 2 3899999998872 12245544 4665 999999999999999999999999999999999998
Q ss_pred cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHH
Q 043334 794 FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKK 871 (903)
Q Consensus 794 f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~ 871 (903)
|++... .+ +..++. .+++|+++||||+++ +|+|+||++++++ +++.+..... ..+++.+.|.++..
T Consensus 238 ~~g~~~--~~----~~~~~~----~~~~i~~~s~SK~~~-~GlRiG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~ 305 (425)
T 2r2n_A 238 FNKFRV--PT----FLSMDV----DGRVIRADSFSKIIS-SGLRIGFLTGPKP-LIERVILHIQVSTLHPSTFNQLMISQ 305 (425)
T ss_dssp SSSSCC--CC----TGGGCT----TSCEEEEEESTTTTC-STTCCEEEEEEHH-HHHHHHHHHHTTTCSSCHHHHHHHHH
T ss_pred CCCCCC--CC----ccccCC----CCCEEEEccchhhcc-CccceEEEecCHH-HHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 976542 11 222332 258999999999998 9999999999987 9998887543 57889999999999
Q ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 872 LLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 872 ~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+|+. .+ .+.+.++++++++.|++|++.+.
T Consensus 306 ~l~~-~~-~~~~~~~~~~~~~~~~~~~~~l~ 334 (425)
T 2r2n_A 306 LLHE-WG-EEGFMAHVDRVIDFYSNQKDAIL 334 (425)
T ss_dssp HHHH-HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cc-cchHHHHHHHHHHHHHHHHHHHH
Confidence 9951 11 12456889999999999998875
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=311.63 Aligned_cols=283 Identities=16% Similarity=0.190 Sum_probs=235.9
Q ss_pred hhccCCCCHHHHHHHH-hhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhh
Q 043334 590 EMIGFSRSAISVLNSA-ELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 590 ~~~~l~~s~i~~l~~a-~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~ 664 (903)
++.++.++.++.+... .. ....++++|+|+.|++++++++.+.+++.+.+.. |....|..++|+++++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~ 84 (391)
T 3h14_A 7 SRSAVDPFIVMDVMEAARR--AEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEW 84 (391)
T ss_dssp STTCCCCCTTHHHHHHHHH--HHHTTCCCEECCCSSCSSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHH
T ss_pred hHhhcCcchHHHHHHHHHH--HHhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 5566666666666532 21 1246788999999999999999999999887653 455667899999999999999
Q ss_pred cCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc
Q 043334 665 FGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET 744 (903)
Q Consensus 665 ~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~ 744 (903)
+|++.+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.++++.+++|.+|++++++.
T Consensus 85 ~g~~~~~~-~v~~t~g~~~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~--- 160 (391)
T 3h14_A 85 YGVDLDPG-RVVITPGSSGGFLLAFTALFDSGDRVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL--- 160 (391)
T ss_dssp HCCCCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS---
T ss_pred hCCCCCHH-HEEEecChHHHHHHHHHHhcCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc---
Confidence 99887777 99999999999999999999999999999999999999999999999999998777789999999876
Q ss_pred CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 745 VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 745 ~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... + ... + . ++++++
T Consensus 161 ~~-~~v~i~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~---~---~~~-~---~---~~~i~~ 225 (391)
T 3h14_A 161 DL-AGLMVASPA-NPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAV---T---ALE-L---T---DECYVI 225 (391)
T ss_dssp CC-SEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC---C---GGG-T---C---SSSEEE
T ss_pred CC-eEEEECCCC-CCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCc---C---hhh-c---C---CCEEEE
Confidence 44 589999998 999999999999999999999999999999999998887642 1 111 1 1 479999
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++.++|. . .+++++.++.++++++.+.
T Consensus 226 ~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~---~-----~~~~~~~~~~~~~~~~~l~ 296 (391)
T 3h14_A 226 NSFSKYFSMTGWRVGWMVVPED-QVRVVERIAQNMFICAPHASQVAALAALD---C-----DAELQANLDVYKANRKLML 296 (391)
T ss_dssp EESSSTTCCTTSCCEEEECCGG-GHHHHHHHHHHTTCCCCHHHHHHHHHHTT---C-----HHHHHHHHHHHHHHHHHHH
T ss_pred EechhccCCccceeEEEEeCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHhC---C-----hHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 8888876653 66788999999988884 2 2667778888888887764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=319.13 Aligned_cols=287 Identities=14% Similarity=0.177 Sum_probs=236.8
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHH-------ccCCCCCchHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFA-------RQNMSESEIDVTPSI 657 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~-------~y~~~~G~~~lr~al 657 (903)
+|+++.++.++.++.+..... ++++|+|+.|.|+.. +++.+.+++.+.+. .|....|.+++++++
T Consensus 54 ~s~~~~~~~~s~~~~~~~~~~------~~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~i 127 (448)
T 3aow_A 54 FSKKALEMRASEVRELLKLVE------TSDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETL 127 (448)
T ss_dssp CCHHHHHCCCCHHHHHHHHHH------TSSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHH
T ss_pred hhHHHhcCCCcHHHHHHHhcc------CCCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHH
Confidence 566777788888887765322 357999999998754 67778888777654 366667899999999
Q ss_pred HHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHH
Q 043334 658 QQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKT 737 (903)
Q Consensus 658 a~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~ 737 (903)
++++++.+|++ +++ +|++|+|+++++..++.+++++||.|+++.|+|..+...++..|++++.+|+++ ++ +|+++
T Consensus 128 a~~~~~~~g~~-~~~-~v~~t~G~~~al~~~~~~l~~~Gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~-~g--~d~~~ 202 (448)
T 3aow_A 128 MKWLGKRYGIS-QDN-DIMITSGSQQALDLIGRVFLNPGDIVVVEAPTYLAALQAFNFYEPQYIQIPLDD-EG--MKVEI 202 (448)
T ss_dssp HHHHHHHHCCC-TTS-EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE--ECHHH
T ss_pred HHHHHHhcCcC-Chh-hEEEeCcHHHHHHHHHHHHcCCCCEEEEeCCChHHHHHHHHHcCCEEEEeccCC-CC--CCHHH
Confidence 99998888986 655 999999999999999999999999999999999999999999999999999975 33 89999
Q ss_pred HHHHhh----c-CCCcEE-EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 738 LVTILE----T-VKKPWV-YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 738 L~~~l~----~-~~~~~v-il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
|++.++ + ...++| ++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... .+ +..+
T Consensus 203 L~~~l~~~~~~~~~~k~v~~~~~~~-NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~--~~----~~~~ 275 (448)
T 3aow_A 203 LEEKLKELKSQGKKVKVVYTVPTFQ-NPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPE--KK----IKAL 275 (448)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCC--CC----TGGG
T ss_pred HHHHHhhhhccCCCCeEEEECCCCC-CCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC--cC----HHhc
Confidence 999987 4 122455 356776 999999999999999999999999999999999999977542 11 2223
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAE 889 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~ 889 (903)
+. .+++++++||||.++ +|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .+ .+++++++
T Consensus 276 ~~----~~~vi~~~S~SK~~~-~GlriG~v~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~L~--~~---~~~~~~~~ 344 (448)
T 3aow_A 276 DN----EGRVIYLGTFSKILA-PGFRIGWMVGDPG-IIRKMEIAKQSTDLCTNVFGQVVAWRYVD--GG---YLEKHIPE 344 (448)
T ss_dssp CT----TSCEEEEEESTTTTC-GGGCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHH--TT---HHHHHHHH
T ss_pred CC----CCCEEEEccchhhcc-ccccEEEEEeCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hC---CHHHHHHH
Confidence 22 258999999999999 9999999999977 9998887653 56779999999999994 22 35688999
Q ss_pred HHHHHHHHHHHHh
Q 043334 890 HIRNLESRSKRLK 902 (903)
Q Consensus 890 ~r~~y~~Rr~~l~ 902 (903)
+++.|++|++.+.
T Consensus 345 ~~~~~~~~~~~l~ 357 (448)
T 3aow_A 345 IRKFYKPRRDAML 357 (448)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998875
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=311.79 Aligned_cols=294 Identities=16% Similarity=0.261 Sum_probs=238.7
Q ss_pred hhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
++++..++.+.+..+.. +.. ....+++.|+|+.|++++++++.+.+++.+.+.. |....|..++++++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 81 (388)
T 1j32_A 4 AARVESVSPSMTLIIDAKAKA--MKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQ 81 (388)
T ss_dssp CHHHHTSCCCSSTTTHHHHHH--HHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhHhHhCCccHHHHHHHHHHH--HHhcCCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 44555566655544443 111 1235778999999999988899999998888753 4445678999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.++++.+++|.+|++++++.+
T Consensus 82 ~~~g~~~~~~-~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 160 (388)
T 1j32_A 82 RDNGLCYGAD-NILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HhcCCCCChh-hEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhc
Confidence 9899877766 999999999999999999999999999999999999999999999999999986557889999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+++.|++... .+ +..+.... .++++
T Consensus 161 ~~~~-~~v~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~~~~~~--~~~~~ 230 (388)
T 1j32_A 161 TPKT-KLLVFNTPS-NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LS----IGAASPEA--YERSV 230 (388)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGGSCHHH--HHTEE
T ss_pred CcCc-eEEEEeCCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC--CC----HHHccccc--cCCEE
Confidence 8655 589999997 999999999999999999999999999999999988876542 11 11111100 13799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++|+||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. .. .++++++++.++++++.
T Consensus 231 ~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 302 (388)
T 1j32_A 231 VCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYE--NS-----QDCVQEMLAAFAERRRY 302 (388)
T ss_dssp EEEESTTTTTCTTTCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHH--SC-----SHHHHHHHHHHHHHHHH
T ss_pred EEeechhccCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 8888876543 57788999999999994 22 25677777788887777
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 303 l~ 304 (388)
T 1j32_A 303 ML 304 (388)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.61 Aligned_cols=296 Identities=15% Similarity=0.168 Sum_probs=232.0
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l 661 (903)
+++++..++.+.+..+...... ....+.++|||+.|.+++++++.+.+++.+.+. .|....|..++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~ 88 (412)
T 2x5d_A 10 RFARIDRLPPYVFNITAELKMA-ARRRGEDIIDLSMGNPDGPTPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWY 88 (412)
T ss_dssp -----------CHHHHHHHHHH-HHHTTCCCEECSSCCCCSCCCHHHHHHHHHTC---------CTTCCHHHHHHHHHHH
T ss_pred hhHHHhhcCchHHHHHHHHHHH-HhhcCCCEEecCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHH
Confidence 4566667777767665532110 123577899999999998888999998887654 2445678899999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
.+.+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++..|++++.+|++.+++|.+|++.+++.
T Consensus 89 ~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~ 168 (412)
T 2x5d_A 89 RDRYDVQIDPESEAIVTIGSKEGLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRE 168 (412)
T ss_dssp HHHHCCCCCTTTSEEEESCHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHT
T ss_pred HHHhCCCCCCCcCEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHh
Confidence 99889876662289999999999999999999999999999999999999999999999999998655788899999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... .+ +..++.. .+++
T Consensus 169 i~~~~-~~v~l~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~---~~~~ 237 (412)
T 2x5d_A 169 SIPKP-RMMILGFPS-NPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKA--PS----IMQVPGA---KDIA 237 (412)
T ss_dssp EESCC-SEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGGSTTG---GGTE
T ss_pred cccCc-eEEEECCCC-CCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--CC----hhhccCc---cCcE
Confidence 98666 589999997 999999999999999999999999999999999988866432 11 1122221 1479
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .. +++++++++.++++++
T Consensus 238 i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~ 309 (412)
T 2x5d_A 238 VEFFTLSKSYNMAGWRIGFMVGNPE-LVSALARIKSYHDYGTFTPLQVAAIAALE--GD-----QQCVRDIARQYQQRRD 309 (412)
T ss_dssp EEEEECC-CCSCTTSCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHH--SC-----SHHHHHHHHHHHHHHH
T ss_pred EEEecCccccCCcccceEEEEcCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHh--CC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 8888877543 57789999999999994 22 2567778888888887
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 310 ~l~ 312 (412)
T 2x5d_A 310 VLV 312 (412)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=306.53 Aligned_cols=284 Identities=17% Similarity=0.188 Sum_probs=233.9
Q ss_pred cCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHHhhcCCCC
Q 043334 593 GFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIKSNFGFPI 669 (903)
Q Consensus 593 ~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~~~~G~~~ 669 (903)
+++++.+..+...... ....+ ++|||+.|++++++|+.+.+++.+.+. .|....|..++++++++++++.+|++.
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~g-~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~ 80 (376)
T 3ezs_A 3 TFEPYPFERLRALLKE-ITPKK-RGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRAAQRGFFKRRFKIEL 80 (376)
T ss_dssp CCCCCHHHHHHHHHTT-CCCSS-CCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCTTCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCcchHHHHHHHHHh-hhccC-CEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 3556677777653221 12345 899999999999999999999887653 356667889999999999999999876
Q ss_pred CCCCcEEecCchHHHHHHHHHHhccC--CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCC
Q 043334 670 DINAEFIYADCSQSLFNKLVLCCILE--GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKK 747 (903)
Q Consensus 670 ~pe~~I~vt~Gs~~al~~ll~~l~~p--GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~ 747 (903)
+++ +|++|+|+++++..++.+++++ ||+|+++.|+|..+...++..|++++.+|++.++++.+ ++++.+.+++
T Consensus 81 ~~~-~i~~t~g~~~al~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~l~~~~~~~~- 155 (376)
T 3ezs_A 81 KEN-ELISTLGSREVLFNFPSFVLFDYQNPTIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP---SLNEKELQEV- 155 (376)
T ss_dssp CGG-GEEEESSSHHHHHHHHHHHTTTCSSCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC---CCCHHHHHHC-
T ss_pred CHH-HEEECcCcHHHHHHHHHHHcCCCCCCEEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch---hHHhhhccCC-
Confidence 666 9999999999999999999999 99999999999999999999999999999987656554 5556666555
Q ss_pred cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc----CCCCCCceEE
Q 043334 748 PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS----STNSSFNVSL 823 (903)
Q Consensus 748 ~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~----~~~~~~~vI~ 823 (903)
+++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... + .....+. . .+++++
T Consensus 156 ~~v~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~---~---~~~~~~~~~~~~---~~~~i~ 225 (376)
T 3ezs_A 156 DLVILNSPN-NPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPP---S---LLEACMLAGNEA---FKNVLV 225 (376)
T ss_dssp SEEEECSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCC---C---HHHHHHHTTCTT---CTTEEE
T ss_pred CEEEEcCCC-CCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCC---C---HHHccccccccc---cCcEEE
Confidence 589999997 999999999999999999999999999999999988877442 2 2221110 1 158999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. .. +++++.++.++++++.+
T Consensus 226 ~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~------~~~~~~~~~~~~~~~~l 296 (376)
T 3ezs_A 226 IHSLSKRSSAPGLRSGFIAGDSR-LLEKYKAFRAYLGYTSANAIQKASEAAWL--DD------RHAEFFRNIYANNLKLA 296 (376)
T ss_dssp EEESTTTTTCGGGCCEEEEECHH-HHHHHHHHHTTTCCCCCHHHHHHHHHHHH--CS------HHHHHHHHHHHHHHHHH
T ss_pred EecchhccCCccceeEEEeeCHH-HHHHHHHHHhhhcCCCChHHHHHHHHHHh--Cc------HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877 9998887654 67789999999999995 22 45788888888888877
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 297 ~ 297 (376)
T 3ezs_A 297 R 297 (376)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=309.20 Aligned_cols=283 Identities=18% Similarity=0.160 Sum_probs=231.4
Q ss_pred CHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 043334 597 SAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDI 671 (903)
Q Consensus 597 s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~p 671 (903)
+.+..+...... ....+.+.|||+.|++++++++.+.+++.+.+.+ |....|..++++++++++++.+|++.++
T Consensus 8 ~~~~~~~~~~~~-~~~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~ 86 (376)
T 2dou_A 8 SVFLVVDEAKRK-ARERGVGLIDLSIGSTDLPPPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDP 86 (376)
T ss_dssp HHHHHHHHHHHH-HHHTTCCCEECSSCCCCCCCCHHHHHHHHHHTTCGGGSSCCCHHHHHHHHHHHHHHHHHHHSCCCCT
T ss_pred chHHHHHHHHHH-hhccCCCEEeccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 455555532211 1145778999999999988899999999888743 2222367889999999999988988665
Q ss_pred CCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEE
Q 043334 672 NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 672 e~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vi 751 (903)
+++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+|+ +++|.+|++++++.+++++ ++|+
T Consensus 87 ~~~v~~~~g~~~a~~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~--~~~~~~d~~~l~~~l~~~~-~~v~ 163 (376)
T 2dou_A 87 RREALALIGSQEGLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPL--REDGLADLKAVPEGVWREA-KVLL 163 (376)
T ss_dssp TTSEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHTTCEEEEECB--CTTSSBCGGGSCHHHHHHE-EEEE
T ss_pred CccEEEcCCcHHHHHHHHHHhcCCCCEEEECCCCcHhHHHHHHHcCCEEEEeeC--CCCCCCCHHHHHHhhccCc-eEEE
Confidence 448999999999999999999999999999999999999999999999999998 4678899999998887655 5899
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
+++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... + .+...+. .+++++++||||.+
T Consensus 164 l~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~---~---~~~~~~~----~~~~i~~~s~sK~~ 232 (376)
T 2dou_A 164 LNYPN-NPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAP---S---PLALPGA----KERVVELFSLSKSY 232 (376)
T ss_dssp ECSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCC---C---GGGSTTG----GGTEEEEEEHHHHH
T ss_pred ECCCC-CCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC---C---hhhcCCC----CCcEEEEecchhhc
Confidence 99997 999999999999999999999999999999999888876432 1 1221111 14799999999999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ +. ++++++.++.++++++.+.
T Consensus 233 ~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 297 (376)
T 2dou_A 233 NLAGFRLGFALGSEE-ALARLERVKGVIDFNQYAGVLRMGVEALK--TP-----KEVVRGYARVYRERALGMA 297 (376)
T ss_dssp TCGGGCCEEEEECHH-HHHHHHHHHHHHCCCSCHHHHHHHHHHHT--SC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CChhheeEEEecCHH-HHHHHHHHHHhcccCCCHHHHHHHHHHHh--Cc-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999999877 9888877543 56778999999999994 32 3678888888888888764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=306.72 Aligned_cols=289 Identities=10% Similarity=0.150 Sum_probs=239.4
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~ 663 (903)
++++..+..+.+..+..... .++.|+|+.|.+++++++.+.+++.+.+.. |....|..++++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~ 82 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALAQ------QHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTER 82 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHHH------HTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHHh------cCCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHH
Confidence 45667777777777665332 246899999999988899999999988754 44456789999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++..|++++.+|++.+ +|.+|++++++.++
T Consensus 83 ~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~-~~~~d~~~l~~~l~ 161 (386)
T 1u08_A 83 LYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPP-HFRVDWQEFAALLS 161 (386)
T ss_dssp HHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCTT-TCCCCHHHHHHHCC
T ss_pred HhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhHHHHHHHcCCEEEEeecCcc-cCcCCHHHHHHhhc
Confidence 88987665447999999999999999999999999999999999999999999999999999753 57899999999997
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... .++ ..++.. .+++++
T Consensus 162 ~~~-~~v~l~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~~----~~~~~~---~~~~i~ 230 (386)
T 1u08_A 162 ERT-RLVILNTPH-NPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGH--ASV----LAHPQL---RERAVA 230 (386)
T ss_dssp TTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCC--CCG----GGSHHH---HTTEEE
T ss_pred ccC-EEEEEeCCC-CCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCC--cCh----hcccCc---cCcEEE
Confidence 655 589999997 999999999999999999999999999999999998876542 111 111111 147999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .. +++++++++.++++++.+
T Consensus 231 ~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 302 (386)
T 1u08_A 231 VSSFGKTYHMTGWKVGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLALADMLR--AE-----PEHYLALPDFYRQKRDIL 302 (386)
T ss_dssp EEEHHHHTTCGGGCCEEEECCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHH--HC-----THHHHTHHHHHHHHHHHH
T ss_pred EecchhhcCCcccceEEEEcCHH-HHHHHHHHHHhhccCCChHHHHHHHHHHh--CC-----cHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877 8888876553 56778899999999994 22 257778888888888876
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 303 ~ 303 (386)
T 1u08_A 303 V 303 (386)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=307.22 Aligned_cols=273 Identities=14% Similarity=0.197 Sum_probs=227.7
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
.+.++..++.+.++.+...... ....+++.|+|+.|++++++++.+.+++.+.+.. |....|..++++++++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~la~~~~ 92 (389)
T 1o4s_A 14 VSRRISEIPISKTMELDAKAKA-LIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIG 92 (389)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHH-HHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHhhcCccHHHHHHHHHHH-HHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4556667777777666542111 1125778999999999988889999999888754 3344578999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|++.+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++++++|.+|++++++.+
T Consensus 93 ~~~g~~~~~~-~v~~~~g~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l 171 (389)
T 1o4s_A 93 ERYKKDISPD-QVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL 171 (389)
T ss_dssp HHHTCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC
T ss_pred HHhCCCCCHH-HEEEecCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhc
Confidence 9889876666 999999999999999999999999999999999999999999999999999976557889999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+.+.+++... + +..++... ++++
T Consensus 172 ~~~~-~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~---~----~~~~~~~~---~~~i 239 (389)
T 1o4s_A 172 VGKT-KAVLINSPN-NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT---S----ILDVSEGF---DRIV 239 (389)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC---C----HHHHCSSS---TTEE
T ss_pred ccCc-eEEEEcCCC-CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC---C----HhhcCCCC---CcEE
Confidence 7755 589999998 999999999999999999999999999999999888876321 2 22232211 4799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|.
T Consensus 240 ~~~s~sK~~~~~G~r~G~l~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~ 292 (389)
T 1o4s_A 240 YINGFSKSHSMTGWRVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALE 292 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHHHTCSCCHHHHHHHHHHTT
T ss_pred EEeechhhcCCcccceEEEEeCHH-HHHHHHHHhhhcccCCCHHHHHHHHHHHh
Confidence 999999999999999999999887 8888877653 56788999999999884
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=310.43 Aligned_cols=291 Identities=14% Similarity=0.191 Sum_probs=238.3
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
++++.+++++.+..+..... ...+.++|+|+.|.+++++++.+.+++.+.+. .|....|..+++++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~---~~~g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~ 99 (404)
T 2o1b_A 23 SNKLANIPDSYFGKTMGRKI---EHGPLPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQ 99 (404)
T ss_dssp CHHHHTSCCCTTC----------CCCSSCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred hhHhhhCCchHHHHHHHHHH---hcCCCCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 67778888887776654322 13456799999999998888999999888753 35555689999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+|+++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.++++. ++|.+|+++|++.+
T Consensus 100 ~~~g~~~~~~~~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l 178 (404)
T 2o1b_A 100 RQYNVTLDKEDEVCILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEP-PHYLPDWSKVDSQI 178 (404)
T ss_dssp HHHCCCCCTTTSEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCSSHHHHHHHTTCEEEEEECCT-TTCCCCGGGSCHHH
T ss_pred HHhCCCCCCcccEEEcCCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHCCCEEEEeccCc-ccCcCCHHHHHHhh
Confidence 98898866523899999999999999999999999999999999999999999999999999976 57889999999888
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... + ... +.+. .++++
T Consensus 179 ~~~~-~~v~l~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~---~---~~~-~~~~---~~~~i 246 (404)
T 2o1b_A 179 IDKT-KLIYLTYPN-NPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNP---S---ILA-SENG---KDVAI 246 (404)
T ss_dssp HHHE-EEEEECSSC-TTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCC---C---GGG-STTH---HHHEE
T ss_pred ccCc-eEEEEcCCC-CCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCC---C---hhh-cCCC---CCCEE
Confidence 7655 588899997 999999999999999999999999999999999988876432 1 111 1111 14799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .+ +++++++++.++++++.
T Consensus 247 ~~~s~sK~~g~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 318 (404)
T 2o1b_A 247 EIYSLSKGYNMSGFRVGFAVGNKD-MIQALKKYQTHTNAGMFGALQDAAIYALN--HY-----DDFLEEQSNVFKTRRDR 318 (404)
T ss_dssp EEEESTTTTTCGGGCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHH
T ss_pred EEEecchhccCchhheEeEecCHH-HHHHHHHHHhhccCCCCHHHHHHHHHHHh--cC-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877 8888877554 56789999999999994 22 36788888888888887
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 319 l~ 320 (404)
T 2o1b_A 319 FE 320 (404)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=308.96 Aligned_cols=291 Identities=15% Similarity=0.174 Sum_probs=240.3
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+++..++++.+..+..... .++.|+|+.|.+++++++.+.+++.+.+.. |....|..++++++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~~~~ 76 (411)
T 2o0r_A 3 TVSRLRPYATTVFAEMSALAT------RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRR 76 (411)
T ss_dssp CCGGGGGGSSCHHHHHHHHHH------TTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhHhHhcCccHHHHHHHHhh------cCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 456677778888877765432 346899999999988899999999988764 4445678999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC-CCcccCHHHHHHH
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE-VGFKMTEKTLVTI 741 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~ 741 (903)
+.+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|+.+...++..|++++.+|++.+ ++|.+|++.+++.
T Consensus 77 ~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~ 156 (411)
T 2o0r_A 77 RHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRA 156 (411)
T ss_dssp HHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHH
T ss_pred HHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHh
Confidence 988987665447999999999999999999999999999999999999999999999999998753 3578999999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..++.. .+++
T Consensus 157 l~~~~-~~v~l~~~~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~---~~~~ 225 (411)
T 2o0r_A 157 VTPRT-RALIINSPH-NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARH--LP----LAGFDGM---AERT 225 (411)
T ss_dssp CCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CC----GGGSTTT---GGGE
T ss_pred hccCc-eEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--cC----hhhccCC---CCCE
Confidence 97655 589999997 999999999999999999999999999999999988876532 11 1222221 1479
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++++||||.+|++|+|+||++++++ +++.+..... ..+.+.+.|.++..+|+ .. +++++++++.++++++
T Consensus 226 i~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~ 297 (411)
T 2o0r_A 226 ITISSAAKMFNCTGWKIGWACGPAE-LIAGVRAAKQYLSYVGGAPFQPAVALALD--TE-----DAWVAALRNSLRARRD 297 (411)
T ss_dssp EEEEEHHHHTTCTTTCEEEEECCHH-HHHHHHHHHHHHTSCCCTTHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCccceEEEEeeCHH-HHHHHHHHHhhccCCCChHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 8888876543 55667788999998884 22 3677788888888887
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 298 ~l~ 300 (411)
T 2o0r_A 298 RLA 300 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-32 Score=307.95 Aligned_cols=275 Identities=13% Similarity=0.076 Sum_probs=222.4
Q ss_pred CCCCeEEccCCCC-----CCCCcHHHHHHHHHHH----HccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQS-----FLPIPSLVKAAIFESF----ARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p-----~~~~p~~v~~al~~al----~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.++|+|++|+| ++++++.+.+++.+.. ..|.+..|.+++|+++++++.+.++.+. ++ +|++|+|+++
T Consensus 36 g~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~-~~-~i~~t~g~~~ 113 (418)
T 3rq1_A 36 GRENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEG-HI-RSIATAGGTG 113 (418)
T ss_dssp CGGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSS-EE-EEEEESHHHH
T ss_pred cCCCeEECCCCcccCCCCCccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccc-cc-cEEECCchHH
Confidence 4668999999986 7788888888876532 3477778999999999999988776542 23 8999999999
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc----CCCcEEEEECC-CCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET----VKKPWVYISGP-TIN 758 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~----~~~~~vil~~P-~~N 758 (903)
++..++.++++|||+|++++|+|+.|...++..|++++.+|+++++ |.+|++.+++.+++ +++.++++++| + |
T Consensus 114 al~~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~-N 191 (418)
T 3rq1_A 114 GIHHLIHNYTEPGDEVLTADWYWGAYRVICSDTGRTLVTYSLFDEH-NNFNHEAFQNRVNELAAKQTNVVVIFNTPGN-N 191 (418)
T ss_dssp HHHHHHHHHSCTTCEEEEESSCCTHHHHHHHHTTCEEEEECSBCTT-SSBCHHHHHHHHHHHHHHCSEEEEEEECSSC-T
T ss_pred HHHHHHHHhcCCCCEEEECCCCchhHHHHHHHcCCEEEEEeeeCCC-CCcCHHHHHHHHHHhhccCCCEEEEEeCCCC-C
Confidence 9999999999999999999999999999999999999999996543 78999999999875 55448899999 7 9
Q ss_pred CcccCCCHHHHHHHHHHHH------hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc--eEEEccCchh
Q 043334 759 PTGLLYSNKEIENILTVCA------KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN--VSLLGGLSLK 830 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~------k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~--vI~l~S~SK~ 830 (903)
|||.+++.+++++|+++|+ ++|++||+||+|.++.+++... .++....++.+ ++ +|+++||||+
T Consensus 192 PtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~-----~~~~~~~~~~~---~~~~~i~~~S~sK~ 263 (418)
T 3rq1_A 192 PTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEV-----RAFFNKFSHLP---KEILTCVCYSLSKG 263 (418)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHH-----HGGGGGGTTCC---TTEEEEEEEESTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHH-----HHHHHHHHhcC---CCceEEEEEeCCCC
Confidence 9999999999999999999 8999999999998877665321 11222222222 23 6899999999
Q ss_pred cccccceeeEEEe---CcHHHHHHHHhCCC------CCCCcHHHHHHHHHHHhcccc-cchhHHHHHHHHHHHHHHHHHH
Q 043334 831 MLTGALKFGFLVL---NHPQLVDAFSSFPG------LSKPHSTVRYAIKKLLGLRER-KARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 831 ~g~~GlRiG~lv~---~~~~li~~l~~~~~------~~~~s~~~Q~aa~~~L~~~~~-~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
||++|+|+||+++ +++ +++.+.+... ..+++.+.|.++..+|. +. ..+.+.+++.++++.|++|++.
T Consensus 264 ~~~~G~r~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (418)
T 3rq1_A 264 FTMYGQRVGAMIGISDDEE-IADEFFEVNKSTSRATWSNICRPAMRTMANIVA--DPAKFKEYEAERNCYYQLIRDRADI 340 (418)
T ss_dssp TTCCSSCCEEEEEEESSHH-HHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCCcceEEEEEeCCHH-HHHHHHHHHHHHHhhccCCCchHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 665 8888877542 35688999999999994 22 0122445666788889998887
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 341 l~ 342 (418)
T 3rq1_A 341 FK 342 (418)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-32 Score=305.93 Aligned_cols=272 Identities=15% Similarity=0.213 Sum_probs=220.9
Q ss_pred HhhhhccC--CCCHHHHHHHH-hhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--------cCCCCCchHHHH
Q 043334 587 KSTEMIGF--SRSAISVLNSA-ELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--------QNMSESEIDVTP 655 (903)
Q Consensus 587 ~s~~~~~l--~~s~i~~l~~a-~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--------y~~~~G~~~lr~ 655 (903)
+++++.++ ..+.++.+... ........++++|||+.|.|++++++.+.+++.+.+.+ |.+..|..++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~~~g~~~lr~ 83 (398)
T 3ele_A 4 VNESMYQLGSVRSAIRELFEYGKKRAAIVGKENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTSAQGDVETRA 83 (398)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHHHHHHHCGGGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCCTTCCHHHHH
T ss_pred hhHHHhccccCchhHHHHHHHHHHHHhhcCCCCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCCCCCcHHHHH
Confidence 34555555 45566655432 11001124568999999999998999999998887643 556678899999
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccC
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld 734 (903)
++++++++.+|.+.+++ +|++|+|+++++..++.+++++| |+|+++.|+|..+...++..|++++.+|+++ ++|.+|
T Consensus 84 ~la~~l~~~~g~~~~~~-~i~~~~g~~~al~~~~~~l~~~g~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d 161 (398)
T 3ele_A 84 AIAEFLNNTHGTHFNAD-NLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVFVNAAGARLVEVPADT-EHFQID 161 (398)
T ss_dssp HHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHHHHHHCCSTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCT-TTSSCC
T ss_pred HHHHHHHHHhCCCCChH-HEEEccCHHHHHHHHHHHHcCCCCCEEEEeCCCchhhHHHHHHcCCEEEEEecCC-cCCcCC
Confidence 99999999999887777 99999999999999999999999 9999999999999999999999999999975 478899
Q ss_pred HHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh------CCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 735 EKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK------YGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 735 ~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k------~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
++++++++++++ +++++++|+ ||||.+++.+++++|+++|++ +|++||+||+|+++.|++...+ ..
T Consensus 162 ~~~l~~~l~~~~-~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~------~~ 233 (398)
T 3ele_A 162 FDALEERINAHT-RGVIINSPN-NPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVP------FV 233 (398)
T ss_dssp HHHHHHTCCTTE-EEEEECSSC-TTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCC------CG
T ss_pred HHHHHHHhCcCC-CEEEEcCCC-CCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcC------Ch
Confidence 999999998765 589999997 999999999999999999999 9999999999999988775421 11
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH-----HHHHHHHhC---CCCCCCcHHHHHHHHHHHh
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP-----QLVDAFSSF---PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~-----~li~~l~~~---~~~~~~s~~~Q~aa~~~L~ 874 (903)
.. .. +++++++||||.+|++|+|+||++++++ .+.+.+... ....+++.+.|.++..++.
T Consensus 234 ~~--~~----~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 301 (398)
T 3ele_A 234 TK--YY----DNTLVCYSYSKSLSLPGERIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQG 301 (398)
T ss_dssp GG--TC----SSEEEEEESTTTSSCTTTCCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCTT
T ss_pred Hh--hc----CCeEEEEehhhcCCCccceeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHhc
Confidence 11 11 4799999999999999999999999876 133343322 2356778899999888884
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=306.97 Aligned_cols=296 Identities=13% Similarity=0.036 Sum_probs=224.4
Q ss_pred cCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC-CCCC----cHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHH
Q 043334 593 GFSRSAISVLNSAELSITETPNSGLIHMDVDQS-FLPI----PSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 593 ~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p-~~~~----p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~ 662 (903)
..+++.+..+..... ....+++|+|++|.+ +... .+.+.+++.+.... |....|.+++|+++++++.
T Consensus 9 ~~~~~~i~~~~~~~~---~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~~ 85 (401)
T 7aat_A 9 MGPPDPILGVTEAFK---RDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELAL 85 (401)
T ss_dssp CCCCCHHHHHHHHHH---HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHh---hCCCCCceeeeeeeEECCCCCEechHHHHHHHHHhcccccccCCCCCCCCHHHHHHHHHHhc
Confidence 344555555553222 145567999999997 5542 24577777766542 4456789999999999999
Q ss_pred hhcCCCCCCCCcEEe--cCchHHHHHHHHHHhc---cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHH
Q 043334 663 SNFGFPIDINAEFIY--ADCSQSLFNKLVLCCI---LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKT 737 (903)
Q Consensus 663 ~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l~---~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~ 737 (903)
+.+|...+++ +|++ |+|+++++..++..+. +|||.|++++|+|..|...++..|++++.+|++.++++.+|++.
T Consensus 86 ~~~~~~~~~~-~i~~v~t~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 164 (401)
T 7aat_A 86 GENSEAFKSG-RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTG 164 (401)
T ss_dssp CTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHH
T ss_pred CCCccccccC-ceEEEecCcchHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHH
Confidence 8888776666 8877 9999999998876665 89999999999999999999999999999999755578899998
Q ss_pred HHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 738 LVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 738 L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+++.+.. ...+++++++|| ||||.+++.+++++|+++|+++|++||+||+|.++.|++...+.++ +..+...
T Consensus 165 l~~~l~~~~~~~~~v~i~~p~-NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~----~~~~~~~- 238 (401)
T 7aat_A 165 AMEDISKIPEKSIILLHACAH-NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA----LRHFIEQ- 238 (401)
T ss_dssp HHHHHTTSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH----HHHHHHT-
T ss_pred HHHHHHhCCCCcEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHH----HHHHHhc-
Confidence 8777753 122588999998 9999999999999999999999999999999999888653211111 2222122
Q ss_pred CCCCceEEEccCchhcccccceeeEEEe--CcHH----HHHHHHhCCC--CCCCcHHHHHHHHHHHhcccc-cchhHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVL--NHPQ----LVDAFSSFPG--LSKPHSTVRYAIKKLLGLRER-KARDLMNA 886 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~~----li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~-~~~~~~~~ 886 (903)
.+++|+++||||+||++|+|+||+++ .+++ +++.+..... ..+++...|.++..++. ++ ..+.+.++
T Consensus 239 --~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~ 314 (401)
T 7aat_A 239 --GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILN--TPELRKEWLVE 314 (401)
T ss_dssp --TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH--CHHHHHHHHHH
T ss_pred --CCcEEEEecCCcccccccCceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHhC--CHHHHHHHHHH
Confidence 15899999999999999999999987 2333 4455554432 56677888998888884 22 11123567
Q ss_pred HHHHHHHHHHHHHHHh
Q 043334 887 VAEHIRNLESRSKRLK 902 (903)
Q Consensus 887 l~~~r~~y~~Rr~~l~ 902 (903)
++++++.|+++|+.+.
T Consensus 315 ~~~~~~~~~~~r~~l~ 330 (401)
T 7aat_A 315 VKGMADRIISMRTQLV 330 (401)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999998875
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=306.70 Aligned_cols=291 Identities=17% Similarity=0.236 Sum_probs=234.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC---CCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS---FLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQ 659 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~ 659 (903)
.++++.++..+.+..+. ... .....+++.|+|+.|.+ ++++++.+.+++.+.+.. |....|..++++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~-~~~-~~~~~g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~l~~~la~ 89 (406)
T 1xi9_A 12 ASKRALSVEYAIRDVVL-PAR-ELEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE 89 (406)
T ss_dssp CCHHHHTCCC--------CHH-HHHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHH-HHH-HHHHcCCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHH
Confidence 45667777777665554 211 11235788999999999 788889999998888763 4445678899999999
Q ss_pred HHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHH
Q 043334 660 YIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLV 739 (903)
Q Consensus 660 ~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~ 739 (903)
++.+.+|++.+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+|++.+++|.+|+++|+
T Consensus 90 ~l~~~~g~~~~~~-~v~~t~g~~~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 168 (406)
T 1xi9_A 90 REKRKNGVDITPD-DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIR 168 (406)
T ss_dssp HHHHHHCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHH
T ss_pred HHHHhcCCCCCHH-HEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHH
Confidence 9999889887776 999999999999999999999999999999999999999999999999999975457889999999
Q ss_pred HHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC
Q 043334 740 TILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819 (903)
Q Consensus 740 ~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~ 819 (903)
+.+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... + +..++ + +
T Consensus 169 ~~l~~~~-~~v~i~~p~-nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~---~----~~~~~--~---~ 234 (406)
T 1xi9_A 169 KKITDRT-KAIAVINPN-NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI---S----PGSLT--K---D 234 (406)
T ss_dssp HHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC---C----HHHHC--S---S
T ss_pred HhhCcCc-eEEEEECCC-CCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCC---C----HHHcC--C---C
Confidence 9998755 589999997 999999999999999999999999999999999988844331 2 22232 2 4
Q ss_pred c-eEEEccCchhcccccceeeEEE--eCc----HHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHH
Q 043334 820 N-VSLLGGLSLKMLTGALKFGFLV--LNH----PQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHI 891 (903)
Q Consensus 820 ~-vI~l~S~SK~~g~~GlRiG~lv--~~~----~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r 891 (903)
+ +++++||||.+|++|+|+||++ +++ + +++.+..... ..+++.+.|.++..+|+ .. .+++++++
T Consensus 235 ~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~ 306 (406)
T 1xi9_A 235 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSE-VREAIDRLARIRLCPNTPAQFAAIAGLT--GP-----MDYLKEYM 306 (406)
T ss_dssp SCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHH-HHHHHHHHHHHTCCSCSHHHHHHHHHHH--SC-----CHHHHHHH
T ss_pred ceEEEEeccccccCCCccEEEEEEEecCchhHHH-HHHHHHHHHHhhcCCCHHHHHHHHHHHh--CC-----cHHHHHHH
Confidence 7 9999999999999999999999 887 6 8888876543 26788899999999994 22 13467777
Q ss_pred HHHHHHHHHHh
Q 043334 892 RNLESRSKRLK 902 (903)
Q Consensus 892 ~~y~~Rr~~l~ 902 (903)
+.++++++.+.
T Consensus 307 ~~~~~~~~~l~ 317 (406)
T 1xi9_A 307 KKLKERRDYIY 317 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888877764
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=307.62 Aligned_cols=295 Identities=11% Similarity=0.084 Sum_probs=240.2
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-------cCCCCCchHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-------QNMSESEIDVTPSIQQ 659 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-------y~~~~G~~~lr~ala~ 659 (903)
+++++.....+.+..+..... .++.|+|+.|.+++++++.+.+++.+.+.. |....|..++++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~ 88 (429)
T 1yiz_A 15 LPKRYQGSTKSVWVEYIQLAA------QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSK 88 (429)
T ss_dssp SSSSCCCCTTCHHHHHHHHHH------HHCCEECCSSSCSSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHH
T ss_pred hhHHhhhCCchHHHHHHHHhc------cCCEEEecCCCCCCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHH
Confidence 456677777777766654321 246899999999988899999999888753 4445578999999999
Q ss_pred HHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC--------Cc
Q 043334 660 YIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV--------GF 731 (903)
Q Consensus 660 ~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~--------~f 731 (903)
++++.+|.+.+++++|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+|++.++ +|
T Consensus 89 ~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 1yiz_A 89 LYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 168 (429)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGC
T ss_pred HHHHHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCc
Confidence 9999889776654479999999999999999999999999999999999999999999999999997643 57
Q ss_pred ccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 732 KMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 732 ~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
.+|++.+++.+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+ +..+
T Consensus 169 ~~d~~~l~~~l~~~~-~~v~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~ 240 (429)
T 1yiz_A 169 VLDNNELEALFNEKT-KMIIINTPH-NPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEH--IR----ICTL 240 (429)
T ss_dssp BCCHHHHHHHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCC--CC----GGGS
T ss_pred ccCHHHHHHHhccCc-eEEEECCCC-CCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCC--cC----hhhc
Confidence 899999999987655 589999997 999999999999999999999999999999999998876542 11 1222
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhccc---ccchhHHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRE---RKARDLMNA 886 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~---~~~~~~~~~ 886 (903)
+.. .++++++.|+||.+|++|+|+||++++++ +++.+.... ...+.+.+.|.++..+|+... + .++++
T Consensus 241 ~~~---~~~~~~~~s~sK~~~~~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~---~~~~~ 313 (429)
T 1yiz_A 241 PGM---WERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLK---SPECY 313 (429)
T ss_dssp TTT---GGGEEEEEEHHHHHTCGGGCCEEEESCHH-HHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHTTTT---STTSH
T ss_pred cCC---cCceEEEecchhccCCCCcceEEEEeCHH-HHHHHHHHHhhcccCCChHHHHHHHHHHhccccccc---chHHH
Confidence 211 24899999999999999999999999877 888887653 366788999999999995200 2 11356
Q ss_pred HHHHHHHHHHHHHHHh
Q 043334 887 VAEHIRNLESRSKRLK 902 (903)
Q Consensus 887 l~~~r~~y~~Rr~~l~ 902 (903)
++++++.++++++.+.
T Consensus 314 ~~~~~~~~~~~~~~l~ 329 (429)
T 1yiz_A 314 FNSISGELMAKRDYMA 329 (429)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888887764
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-32 Score=309.78 Aligned_cols=286 Identities=16% Similarity=0.271 Sum_probs=228.4
Q ss_pred CCHHHHHHHHhhhhccCCCCCeEEccCCCCC----CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcC
Q 043334 596 RSAISVLNSAELSITETPNSGLIHMDVDQSF----LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFG 666 (903)
Q Consensus 596 ~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~----~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G 666 (903)
.++++.+...-. ....+++++|+|+.|.++ +++++.+++++.+.+.. |.+..|..++++++++++.+. |
T Consensus 36 ~~~i~~~~~~~~-~~~~~~~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~-~ 113 (427)
T 3dyd_A 36 FNPIRAIVDNMK-VKPNPNKTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNGYAPSIGFLSSREEIASYYHCP-E 113 (427)
T ss_dssp -----------C-CCCCTTSCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSSCCCTTCCHHHHHHHHHHHCBT-T
T ss_pred cchHHHHHHHHh-hcccCCCCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcHHHHHHHHHHHhhc-C
Confidence 344666554321 122456678999999985 57899999999888764 445678999999999999765 7
Q ss_pred CCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC
Q 043334 667 FPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK 746 (903)
Q Consensus 667 ~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~ 746 (903)
.+.+++ +|++|+|+++++..++..++++||+|+++.|+|..+...++..|++++.++++++++|.+|++.+++.+++++
T Consensus 114 ~~~~~~-~v~~t~g~t~al~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 192 (427)
T 3dyd_A 114 APLEAK-DVILTSGCSQAIDLCLAVLANPGQNILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEKT 192 (427)
T ss_dssp BCCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTTE
T ss_pred CCCChH-HEEEecCcHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCC
Confidence 766666 9999999999999999999999999999999999999999999999999999776788999999999998765
Q ss_pred CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEcc
Q 043334 747 KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGG 826 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S 826 (903)
+++++++|+ ||||.+++.+++++|+++|+++|+++|+||+|.++.|++... .+ +..+... .++++++|
T Consensus 193 -~~v~i~~p~-nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~--~~----~~~~~~~----~~vi~~~S 260 (427)
T 3dyd_A 193 -ACLIVNNPS-NPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKY--EP----LATLSTD----VPILSCGG 260 (427)
T ss_dssp -EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCC--CC----GGGGCSS----CCEEEEEE
T ss_pred -CEEEEECCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcC--cc----HHHhCCC----CcEEEEee
Confidence 589999997 999999999999999999999999999999999999877543 11 2223222 46899999
Q ss_pred CchhcccccceeeEEEeCc------HHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 827 LSLKMLTGALKFGFLVLNH------PQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~------~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|||.|+++|+|+||+++++ +++++.+..... .++++.+.|.++..+|+. .. .+++.++++.++++++
T Consensus 261 ~sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~a~~~~L~~-~~-----~~~~~~~~~~~~~~~~ 334 (427)
T 3dyd_A 261 LAKRWLVPGWRLGWILIHDRRDIFGNEIRDGLVKLSQRILGPCTIVQGALKSILCR-TP-----GEFYHNTLSFLKSNAD 334 (427)
T ss_dssp STTTSSCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH-SC-----HHHHHHHHHHHHHHHH
T ss_pred ccccCCCcCcceEEEEecCcchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cC-----HHHHHHHHHHHHHHHH
Confidence 9999999999999999985 347777766543 678899999999999951 11 3566777777777777
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 335 ~l~ 337 (427)
T 3dyd_A 335 LCY 337 (427)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=298.64 Aligned_cols=266 Identities=11% Similarity=0.103 Sum_probs=228.0
Q ss_pred cCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 611 ETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
...|+++|||+.|++++++++.+.+++.+.+.+ |.. .| .++++++++++.+.+|.+.+++ +|++|+|+++++.
T Consensus 19 d~~g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~-~~-~~lr~~la~~~~~~~~~~~~~~-~i~~t~g~~~a~~ 95 (377)
T 3fdb_A 19 TRYGQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGYQP-DG-SLLSQATAEFYADRYGYQARPE-WIFPIPDVVRGLY 95 (377)
T ss_dssp HSSCTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSSCC-SS-CCHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHH
T ss_pred eccCCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCCCC-CC-HHHHHHHHHHHHHHhCCCCCHH-HEEEeCChHHHHH
Confidence 346789999999999999999999999988764 344 56 8899999999999999887776 9999999999999
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCH
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ 766 (903)
.++.+++++||+|+++.|+|..+...++..|++++.+|++.+ +|++++++.+++++ +++++++|+ ||||.+++.
T Consensus 96 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~d~~~l~~~l~~~~-~~v~i~~p~-nptG~~~~~ 169 (377)
T 3fdb_A 96 IAIDHFTPAQSKVIVPTPAYPPFFHLLSATQREGIFIDATGG----INLHDVEKGFQAGA-RSILLCNPY-NPLGMVFAP 169 (377)
T ss_dssp HHHHHHSCTTCCEEEEESCCTHHHHHHHHHTCCEEEEECTTS----CCHHHHHHHHHTTC-CEEEEESSB-TTTTBCCCH
T ss_pred HHHHHhcCCCCEEEEcCCCcHhHHHHHHHcCCEEEEccCCCC----CCHHHHHHHhccCC-CEEEEeCCC-CCCCCCCCH
Confidence 999999999999999999999999999999999999999753 89999999998876 599999997 999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCC-CCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNY-EGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~-~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
+++++|+++|+++|+++|+||+|..+.|++ ... .+ +..++.. +++++++||||.+|++|+|+||+++++
T Consensus 170 ~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~--~~----~~~~~~~----~~~i~~~s~sK~~g~~G~r~G~~~~~~ 239 (377)
T 3fdb_A 170 EWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTV--AA----GVSDTAA----SVCITITAPSKAWNIAGLKCAQIIFSN 239 (377)
T ss_dssp HHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCC--GG----GSCHHHH----HHEEEEECSTTTTTCGGGCCEEEECCS
T ss_pred HHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCc--cc----HHHccCC----CcEEEEEeChHhccCcchhheEEEeCC
Confidence 999999999999999999999999988877 332 11 1122221 489999999999999999999999866
Q ss_pred HHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 846 PQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 846 ~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++.+..... ..+++.+.|.++..+|. +. +++++++++.++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 291 (377)
T 3fdb_A 240 PSDAEHWQQLSPVIKDGASTLGLIAAEAAYR--YG-----TDFLNQEVAYLKNNHDFLL 291 (377)
T ss_dssp HHHHHHHHHSCHHHHCCCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHh--cc-----HHHHHHHHHHHHHHHHHHH
Confidence 559999988764 57889999999999994 22 3567777788888777664
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=310.71 Aligned_cols=301 Identities=10% Similarity=0.022 Sum_probs=218.1
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCC-CCCCcHHHHHHHHHHHH----ccCCCCCchHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQS-FLPIPSLVKAAIFESFA----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p-~~~~p~~v~~al~~al~----~y~~~~G~~~lr~ala~~ 660 (903)
++.++..++++.+..+.. .+. ...+++|+|++|.+ +++.++.+.+++.++.. .|.+..|.+++|++++++
T Consensus 16 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~~~~~~y~~~~g~~~lr~~ia~~ 91 (409)
T 4eu1_A 16 TQGPGSMGKPDPILGLGQDFRM----DPAKRKVNLSIGVYRDDADQPFVLECVKQATLGTNMDYAPVTGIASFVEEAQKL 91 (409)
T ss_dssp -----------CHHHHHHHHHH----CCCSSCEECCCSSCCCTTSCCCCCHHHHTCCCCSCCCCCCTTCCHHHHHHHHHH
T ss_pred HhhcCCCCCCChHHHHHHHHhh----CCCcCceeeeeeEEECCCCCEeecHHHHhcCccccccCCCCCCcHHHHHHHHHH
Confidence 566777777776555553 333 45678999999997 87777677777766532 255567889999999999
Q ss_pred HHhhcCCCCCCCCcE--EecCchHHHHHHH---HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCH
Q 043334 661 IKSNFGFPIDINAEF--IYADCSQSLFNKL---VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTE 735 (903)
Q Consensus 661 l~~~~G~~~~pe~~I--~vt~Gs~~al~~l---l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~ 735 (903)
+....+.+.+++ +| ..|.|+++++..+ +.+++++||.|++++|+|+.|...++..|++++.+|+..+++|.+|+
T Consensus 92 ~~~~~~~~~~~~-~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 170 (409)
T 4eu1_A 92 CFGPTCAALRDG-RIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPYSYYDPATKGLNL 170 (409)
T ss_dssp HHCSSCHHHHTT-CEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTCEEEEECCEETTTTEECH
T ss_pred HcCCCchhhccC-ceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCCeEEEEEeecCcCCcCcH
Confidence 843222222233 67 4488888877754 55667899999999999999999999999999999996556788999
Q ss_pred HHHHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc
Q 043334 736 KTLVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS 813 (903)
Q Consensus 736 ~~L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~ 813 (903)
+++++.+++ .++.++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++...+.. + +..+.+
T Consensus 171 ~~l~~~l~~~~~~~~~i~~~~p~-NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~---~-~~~~~~ 245 (409)
T 4eu1_A 171 AGMLECLDKAPEGSVILVHACAH-NPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAF---V-PRHLVD 245 (409)
T ss_dssp HHHHHHHHHSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH---H-HHHHHT
T ss_pred HHHHHHHHhCCCCcEEEEECCCC-CCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchH---H-HHHHHh
Confidence 999999873 333466669997 999999999999999999999999999999999988876210001 1 122212
Q ss_pred CCCCCCceEEEccCchhcccccceeeEE--EeCcHH----HHHHHHhCCC--CCCCcHHHHHHHHHHHhccccc-chhHH
Q 043334 814 STNSSFNVSLLGGLSLKMLTGALKFGFL--VLNHPQ----LVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERK-ARDLM 884 (903)
Q Consensus 814 ~~~~~~~vI~l~S~SK~~g~~GlRiG~l--v~~~~~----li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~-~~~~~ 884 (903)
. .+++|+++||||+||++|+|+||+ ++++++ +++.+..... ..+++.+.|.++..+|. ++. .+.+.
T Consensus 246 ~---~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~ 320 (409)
T 4eu1_A 246 M---VPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILK--DPQLTALWK 320 (409)
T ss_dssp T---SSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH--CHHHHHHHH
T ss_pred h---CCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhC--CHHHHHHHH
Confidence 2 147999999999999999999998 777665 5566655432 56778999999999994 220 11234
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 043334 885 NAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 885 ~~l~~~r~~y~~Rr~~l~ 902 (903)
++++++++.|++|++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~l~ 338 (409)
T 4eu1_A 321 KELKQMSSRIAEVRKRLV 338 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888999999998875
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-31 Score=299.41 Aligned_cols=297 Identities=13% Similarity=0.051 Sum_probs=226.9
Q ss_pred ccCCCCHHHHHHHHhhhhccCCCCCeEEccCC---CCCCCCc--HHHHHHHHH-HHHc-----cCCCCCchHHHHHHHHH
Q 043334 592 IGFSRSAISVLNSAELSITETPNSGLIHMDVD---QSFLPIP--SLVKAAIFE-SFAR-----QNMSESEIDVTPSIQQY 660 (903)
Q Consensus 592 ~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g---~p~~~~p--~~v~~al~~-al~~-----y~~~~G~~~lr~ala~~ 660 (903)
...+.+.+..+..... ....+++|+|+.| +++.++| +.+.+++.+ .+.. |....|.+++|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 82 (397)
T 3fsl_A 6 DAYAGDPILTLMERFK---EDPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPL 82 (397)
T ss_dssp CCCCCCHHHHHHHHHH---TCCCSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCCCCCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHh---cCCCCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCccccccCCCCCchHHHHHHHHHH
Confidence 4456667776664322 2456789999999 5665544 899999998 7753 44557889999999999
Q ss_pred HHhhcCCCCCCCC-cEEecCchHHHHHHHH--HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHH
Q 043334 661 IKSNFGFPIDINA-EFIYADCSQSLFNKLV--LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKT 737 (903)
Q Consensus 661 l~~~~G~~~~pe~-~I~vt~Gs~~al~~ll--~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~ 737 (903)
+...++...+++. +|++|+|+++++..++ .+++++||+|+++.|+|..+...++..|++++.+++..++++.+|+++
T Consensus 83 ~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~ 162 (397)
T 3fsl_A 83 LFGADHPVLKQQRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFND 162 (397)
T ss_dssp HHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHH
T ss_pred HhcCCcccccccceEEEEcCCcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHH
Confidence 9876554334332 6999999999999984 566899999999999999999999999999999999544578899999
Q ss_pred HHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 738 LVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 738 L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+++.++.. ...++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... . ..+..+....
T Consensus 163 l~~~l~~~~~~~~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~----~-~~~~~~~~~~ 236 (397)
T 3fsl_A 163 LLATLKTLQAGSIVLLHPCCH-NPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEED----A-YAIRAIASAG 236 (397)
T ss_dssp HHHHHTTCCTTCEEEECSSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGG----G-HHHHHHHHTT
T ss_pred HHHHHHhCCCCCEEEEeCCCC-CCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccc----c-HHHHHHHhcC
Confidence 99999732 22478888997 999999999999999999999999999999999998874221 0 1122232222
Q ss_pred CCCCceEEEccCchhcccccceeeEEEe--CcHHHHHHHHhC------CCCCCCcHHHHHHHHHHHhccccc-chhHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVL--NHPQLVDAFSSF------PGLSKPHSTVRYAIKKLLGLRERK-ARDLMNA 886 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~~li~~l~~~------~~~~~~s~~~Q~aa~~~L~~~~~~-~~~~~~~ 886 (903)
+++++++||||.+|++|+|+||+++ ++.++++.+... ....+++.+.|.++..+|. ++. ...+.++
T Consensus 237 ---~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~l~~~~~~~ 311 (397)
T 3fsl_A 237 ---LPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLN--DEALKASWLKE 311 (397)
T ss_dssp ---CCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHT--SHHHHHHHHHH
T ss_pred ---CCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhc--CHHHHHHHHHH
Confidence 5899999999999999999999985 444355544321 2355678899999998884 221 1113577
Q ss_pred HHHHHHHHHHHHHHHh
Q 043334 887 VAEHIRNLESRSKRLK 902 (903)
Q Consensus 887 l~~~r~~y~~Rr~~l~ 902 (903)
++++++.++++++.+.
T Consensus 312 ~~~~~~~~~~~~~~l~ 327 (397)
T 3fsl_A 312 VEEMRTRILAMRQELV 327 (397)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999999988875
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=5.3e-31 Score=296.96 Aligned_cols=273 Identities=14% Similarity=0.093 Sum_probs=227.0
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
..+.++|+|+.|++++++++.+.+++.+.+.+. .+.....++++++++++++.+|.+.+++ +|++|+|+++++..++
T Consensus 24 ~~g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~-~i~~~~g~~~a~~~~~ 102 (391)
T 3dzz_A 24 VLKEKELPMWIAEMDFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKED-WCVFASGVVPAISAMV 102 (391)
T ss_dssp TCCTTCEECCSSCCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGG-GEEEESCHHHHHHHHH
T ss_pred ccCCCceeccccCCCCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEECCCHHHHHHHHH
Confidence 356689999999999999999999999988652 2223367899999999999999777766 9999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC-CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE-SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~-~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
.+++++||+|+++.|+|..+...++..|++++.+|++ .+++|.+|++++++++++...++|++++|+ ||||.++|.++
T Consensus 103 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~-nptG~~~~~~~ 181 (391)
T 3dzz_A 103 RQFTSPGDQILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPH-NPIGYAWSEEE 181 (391)
T ss_dssp HHHSCTTCEEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSB-TTTTBCCCHHH
T ss_pred HHhCCCCCeEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCC-CCCCcccCHHH
Confidence 9999999999999999999999999999999999996 345688999999999983333589999997 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc-cCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY-SSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~-~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
+++|+++|+++|++||+||+|+++.+.+... .+ +..+. ..+ ++++++.|+||.+|++|+|+||+++++++
T Consensus 182 l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~~~---d~~i~~~s~sK~~g~~G~r~G~~~~~~~~ 252 (391)
T 3dzz_A 182 VKRIAELCAKHQVLLISDEIHGDLVLTDEDI--TP----AFTVDWDAK---NWVVSLISPSKTFNLAALHAACAIIPNPD 252 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCSSCCC--CC----GGGSCTTTG---GGEEEEECSHHHHTCTTTCCEEEECCSHH
T ss_pred HHHHHHHHHHCCCEEEEecccccccCCCCCc--ee----hhhcCcccc---CcEEEEEeChhhccccchhheEEEECCHH
Confidence 9999999999999999999999988877542 11 22222 111 58999999999999999999999998555
Q ss_pred HHHHHHhCC---CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFP---GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~---~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+.... ...+++.+.|.++..+|. .. .+++++.++.++++++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 303 (391)
T 3dzz_A 253 LRARAEESFFLAGIGEPNLLAIPAAIAAYE--EG-----HDWLRELKQVLRDNFAYAR 303 (391)
T ss_dssp HHHHHHHHHHHHTCSSCCTTHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHh--cc-----HHHHHHHHHHHHHHHHHHH
Confidence 888887663 356788899999998884 22 3566777777777776654
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-31 Score=305.73 Aligned_cols=278 Identities=14% Similarity=0.080 Sum_probs=228.0
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..++++|+|+.|+|++++++.+.+++.+.+.. |....|..++|+++++++.+.+|++.+++ +|++|+|+++++.
T Consensus 41 ~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~i~~t~g~t~al~ 119 (437)
T 3g0t_A 41 ATGTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPAR-ACVPTVGSMQGCF 119 (437)
T ss_dssp HHTCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHH
T ss_pred hcCCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcc-cEEEeCCHHHHHH
Confidence 35778999999999999999999999887752 45556789999999999999999888777 9999999999999
Q ss_pred HHHHHhc--cCCC--eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh-hcCCCcEEEEECCCCCCcc
Q 043334 687 KLVLCCI--LEGG--TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL-ETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 687 ~ll~~l~--~pGD--~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l-~~~~~~~vil~~P~~NPTG 761 (903)
.++.+++ ++|| +|+++.|+|..+...++..|++++.++++ +++|.+|++++++++ ++++ ++|++++|+ ||||
T Consensus 120 ~~~~~l~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~-~~v~l~~p~-nptG 196 (437)
T 3g0t_A 120 VSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTGQF-CSIIYSNPN-NPTW 196 (437)
T ss_dssp HHHHHHTTSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCC-CEEEEESSC-TTTC
T ss_pred HHHHHHhcCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCc-eEEEEeCCC-CCCC
Confidence 9999998 9999 99999999999999999999999999997 467889999999999 5555 589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.+++.+++++|+++|+++|++||+||+|+.+.|++.. +....+++...+.... +++++++||||.+|++|+|+||+
T Consensus 197 ~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~~~s~sK~~~~~G~r~G~~ 272 (437)
T 3g0t_A 197 QCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDY-SHPGEPLYQPSVANYT---DNYILALSSSKAFSYAGQRIGVL 272 (437)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCC-CSTTSSCCCCCGGGTC---SCEEEEEESTTTTSCGGGCCEEE
T ss_pred CcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCc-CcccccchhhccCCCC---CcEEEEEcCccCCCCccceeEEE
Confidence 9999999999999999999999999999988887432 1100001102222322 58999999999999999999999
Q ss_pred EeCcHHHHH-H-----------------HHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 842 VLNHPQLVD-A-----------------FSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 842 v~~~~~li~-~-----------------l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++++ +++ . +..... ..+++.+.|.++..+|. .. +.++.++++.++.++++++.+
T Consensus 273 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~l 347 (437)
T 3g0t_A 273 MISGK-LYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLK--AC--NDGEYNFRDSVIEYGRKARIM 347 (437)
T ss_dssp EECHH-HHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHH--HH--HTTSCCHHHHHHHHHHHHHHH
T ss_pred EECHH-HhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHh--Cc--HhHHHHHHHHHHHHHHHHHHH
Confidence 99977 888 6 655443 56789999999999994 22 101112677777777777766
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 348 ~ 348 (437)
T 3g0t_A 348 K 348 (437)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=7.9e-31 Score=295.59 Aligned_cols=271 Identities=11% Similarity=0.132 Sum_probs=227.6
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.+.++|+|+.|++++++|+.+.+++.+.+.+ +.+..+..++++++++++++.+|.+.+++ +|++|+|+++++..++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~~g~~~a~~~~~~ 108 (391)
T 4dq6_A 30 GTNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSE-WLIYSPGVIPAISLLIN 108 (391)
T ss_dssp SCSCSEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHHHHHH
T ss_pred CCCCceeccccCCCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEcCChHHHHHHHHH
Confidence 3578999999999999999999999998864 23344678999999999999999766666 99999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC--CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE--SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~--~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+++++||+|+++.|+|..+...++..|++++.+|++ .+++|.+|++++++++++ + +++++++|+ ||||.+++.++
T Consensus 109 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~-~~v~i~~p~-nptG~~~~~~~ 185 (391)
T 4dq6_A 109 ELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD-V-KLFILCNPH-NPVGRVWTKDE 185 (391)
T ss_dssp HHSCTTCEEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT-E-EEEEEESSB-TTTTBCCCHHH
T ss_pred HhCCCCCEEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc-C-CEEEEECCC-CCCCcCcCHHH
Confidence 999999999999999999999999999999999997 456788999999999987 4 689999997 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+++|+++|+++|+++|+||+|.++.+++... .+ +..+.... .+++++++||||.+|++|+|+||++++++++
T Consensus 186 l~~i~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~ 257 (391)
T 4dq6_A 186 LKKLGDICLKHNVKIISDEIHSDIILKKHKH--IP----MASISKEF--EKNTITCMAPTKTFNIAGLQSSYVVLPDEKD 257 (391)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CC----GGGSCHHH--HHTEEEEECSHHHHTCGGGCCEEEECCSHHH
T ss_pred HHHHHHHHHHcCCEEEeeccccccccCCCCc--cC----HHHcCccc--cCcEEEEEechhhccCcccceEEEEeCCHHH
Confidence 9999999999999999999999988877543 11 11121100 1378999999999999999999999998448
Q ss_pred HHHHHhCC---CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFP---GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~---~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+.... ...+++.+.|.++..+|. .. ++++++.++.++++++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 307 (391)
T 4dq6_A 258 YKLLDDAFTRIDIKRNNCFSLVATEASYN--NG-----ESWLESFLEYLESNIDFAI 307 (391)
T ss_dssp HHHHHHHHHHTTCCCCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHh--ch-----HHHHHHHHHHHHHHHHHHH
Confidence 88887653 255788999999999884 22 2567777777777777654
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-31 Score=308.62 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=216.3
Q ss_pred cHHHHHHHHHHHHc--------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc-cCCCeEE
Q 043334 630 PSLVKAAIFESFAR--------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI-LEGGTLC 700 (903)
Q Consensus 630 p~~v~~al~~al~~--------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~-~pGD~Vl 700 (903)
|..+++++.+.+.. |....|.+++|+++++++.+++|.+.+++ +|++|+|+++++..++.+++ ++||.|+
T Consensus 108 p~~~~~~a~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~~~al~~~~~~l~~~~gd~Vl 186 (500)
T 3tcm_A 108 SADSISRAKQILAMIPGRATGAYSHSQGIHGLRDAIASGIASRDGFPANAD-DIFLTDGASPGVHLMMQLLIRNEKDGIL 186 (500)
T ss_dssp CHHHHHHHHHHHTTSTTSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEESSSHHHHHHHHHHHCCSTTEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEcCCHHHHHHHHHHHHcCCCCCEEE
Confidence 44455555555543 44567899999999999999999888777 99999999999999999998 8999999
Q ss_pred EcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHH
Q 043334 701 FPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTV 775 (903)
Q Consensus 701 v~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~i 775 (903)
++.|+|+.|...++..|++++.++++++++|.+|++.|++++++. ..++|++++|+ ||||.++|.+++++|+++
T Consensus 187 v~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~-NPtG~~~s~~~l~~i~~l 265 (500)
T 3tcm_A 187 VPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPG-NPTGQVLAEENQYDIVKF 265 (500)
T ss_dssp EEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSC-TTTCCCCCHHHHHHHHHH
T ss_pred EeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCC-CCCcccCCHHHHHHHHHH
Confidence 999999999999999999999999998778999999999998862 23589999997 999999999999999999
Q ss_pred HHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEe---CcHHHHHH
Q 043334 776 CAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVL---NHPQLVDA 851 (903)
Q Consensus 776 a~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~---~~~~li~~ 851 (903)
|+++|++||+||+|..+.|++.. .+.++......+.... .+.++|+++||||+| |++|+|+||+++ +++ +++.
T Consensus 266 a~~~~~~li~Deay~~~~~~~~~-~~~s~~~~~~~~~~~~-~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~-~~~~ 342 (500)
T 3tcm_A 266 CKNEGLVLLADEVYQENIYVDNK-KFHSFKKIVRSLGYGE-EDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAP-VREQ 342 (500)
T ss_dssp HHHHTCEEEEECTTTTCBCCTTC-CCCCHHHHHHHTTCSS-SCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTT-HHHH
T ss_pred HHHcCCEEEEecCccccccCCCC-CCCcHHHHHHHhcccc-CCeEEEEEecCCccCCCCCccceEEEEEeCCCHH-HHHH
Confidence 99999999999999999996532 1123322222331101 024689999999999 899999999998 665 8888
Q ss_pred HHhCCC-CCCCcHHHHHHHHHHHhccc---ccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPG-LSKPHSTVRYAIKKLLGLRE---RKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~-~~~~s~~~Q~aa~~~L~~~~---~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+... .++++.+.|.++..++.... +..+.+.+++.++++.|++|++.+.
T Consensus 343 l~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 397 (500)
T 3tcm_A 343 IYKIASVNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALE 397 (500)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877654 67889999999999994111 1112355677888889999998875
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-31 Score=294.68 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=231.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+++++..++.+.++.+...... ....+++.|+|+.|.+++++++.+.+++.+.+.. |....|..++++++++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~ 80 (370)
T 2z61_A 2 LSKRLLNFESFEVMDILALAQK-LESEGKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGKTHYTDSRGILELREKISELYK 80 (370)
T ss_dssp CCHHHHHCCCCTTHHHHHHHHH-HHHTTCCCEECCCCSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccHHHHHHHHHHH-HHhcCCCEEEccCCCCCCCCCHHHHHHHHHHHHcCccCCCCCCCCHHHHHHHHHHHH
Confidence 4566667777777766642111 1134678999999999988889999999888754 4445678999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|++.+++ +|++|+|+++++..++.+++++||+|++++|+|+.+...++..|++++.+| +|++++++.+
T Consensus 81 ~~~g~~~~~~-~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~--------~d~~~l~~~l 151 (370)
T 2z61_A 81 DKYKADIIPD-NIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD--------FTVESLEEAL 151 (370)
T ss_dssp HHSSCCCCGG-GEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEEC--------SSHHHHHHHC
T ss_pred HHhCCCCChh-hEEECCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEEeC--------CCHHHHHHhc
Confidence 9899887777 999999999999999999999999999999999999999999999999997 5789999998
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++|++++|+ ||||.+++.+ |.++|+++|++||+||+|..+.+++... + +..+++. .++++
T Consensus 152 ~~~~-~~v~~~~p~-nptG~~~~~~----l~~~~~~~~~~li~De~~~~~~~~g~~~---~----~~~~~~~---~~~~i 215 (370)
T 2z61_A 152 SDKT-KAIIINSPS-NPLGEVIDRE----IYEFAYENIPYIISDEIYNGLVYEGKCY---S----AIEFDEN---LEKTI 215 (370)
T ss_dssp CSSE-EEEEEESSC-TTTCCCCCHH----HHHHHHHHCSEEEEECTTTTCBSSSCCC---C----GGGTCTT---CSSEE
T ss_pred ccCc-eEEEEcCCC-CCcCcccCHH----HHHHHHHcCCEEEEEcchhhcccCCCCc---C----HHHccCC---CCcEE
Confidence 7655 589999997 9999999976 9999999999999999999888876432 1 1222212 15899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhccc-ccchhHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRE-RKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~-~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ . + .++++++++.++++++
T Consensus 216 ~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~-----~~~~~~~~~~~~~~~~ 287 (370)
T 2z61_A 216 LINGFSKLYAMTGWRIGYVISNDE-IIEAILKLQQNLFISAPTISQYAALKAFE--KET-----EREINSMIKEFDRRRR 287 (370)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHHHTSSSCHHHHHHHGGGGS--HHH-----HHHHHHHHHHHHHHHH
T ss_pred EEecChhccCCccceEEEEEECHH-HHHHHHHHHhhcccCCCHHHHHHHHHHHh--ccC-----HHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 9988877653 56788999999988883 2 2 3577788888888888
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 288 ~l~ 290 (370)
T 2z61_A 288 LVL 290 (370)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.1e-31 Score=299.06 Aligned_cols=267 Identities=14% Similarity=0.182 Sum_probs=222.4
Q ss_pred CeEEccCCCCC-CCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 616 GLIHMDVDQSF-LPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 616 ~~IdLs~g~p~-~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+|||+.|++. +++++.+++++.+.+.. |....|..++++++++++++.+|.+.+++++|++|+|+++++..++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~ 119 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAV 119 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHH
Confidence 48999998876 67888999998888753 5667789999999999999999988765348999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC----CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCC
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES----EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYS 765 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~----~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s 765 (903)
.+++++||+|+++.|+|..+...++..|++++.++++. ++++.+|++++++.+++++ +++++++|+ ||||.+++
T Consensus 120 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-~~v~~~~p~-nptG~~~~ 197 (407)
T 3nra_A 120 AATVARGDKVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGA-RVFLFSNPN-NPAGVVYS 197 (407)
T ss_dssp HTTCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTC-CEEEEESSC-TTTCCCCC
T ss_pred HHhCCCCCEEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhhCC-cEEEEcCCC-CCCCcccC
Confidence 99999999999999999999999999999999999842 2567899999999998766 589999997 99999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc-cCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 766 NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY-SSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 766 ~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~-~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
.+++++|+++|+++|++||+||+|+.+.|++... .+ +..++ .. .+++++++||||.+|++|+|+||++++
T Consensus 198 ~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~--~~----~~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~ 268 (407)
T 3nra_A 198 AEEIGQIAALAARYGATVIADQLYSRLRYAGASY--TH----LRAEAAVD---AENVVTIMGPSKTESLSGYRLGVAFGS 268 (407)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCC--CC----GGGCTTSC---GGGEEEEECSSSTTCCGGGCCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEccccccccCCCCC--CC----hhhcCccc---CCcEEEEeCcccccCCCeeeEEEEEcC
Confidence 9999999999999999999999999998887653 11 22222 11 258999999999999999999999998
Q ss_pred cHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 845 HPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 845 ~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
++ +++.+..... ..+++.+.|.++..+|. +. .+++++.++.++++++.+
T Consensus 269 ~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 319 (407)
T 3nra_A 269 RA-IIARMEKLQAIVSLRAAGYSQAVLRGWFD--EA-----PGWMEDRIARHQAIRDEL 319 (407)
T ss_dssp HH-HHHHHHHHHHHHTSSSCHHHHGGGGGTTC--CC-----TTHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhhhccCCChHHHHHHHHHHh--cc-----chHHHHHHHHHHHHHHHH
Confidence 77 8888887654 56677889998888884 22 134455555566666554
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-31 Score=308.68 Aligned_cols=268 Identities=15% Similarity=0.191 Sum_probs=209.8
Q ss_pred cHHHHHHHHHHHH--------ccCCCCCchHHHHHHHHHHHhhcC-CCCCCCCcEEecCchHHHHHHHHHHhccCCC---
Q 043334 630 PSLVKAAIFESFA--------RQNMSESEIDVTPSIQQYIKSNFG-FPIDINAEFIYADCSQSLFNKLVLCCILEGG--- 697 (903)
Q Consensus 630 p~~v~~al~~al~--------~y~~~~G~~~lr~ala~~l~~~~G-~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD--- 697 (903)
|..+.+++.+++. .|....|.+++|+++++++++++| ++.+++ +|++|+|+++++..++.+++++||
T Consensus 103 P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~-~i~~t~G~~~ai~~~~~~l~~~gd~~~ 181 (498)
T 3ihj_A 103 PEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPD-NIYLTTGASDGISTILKILVSGGGKSR 181 (498)
T ss_dssp CHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHHTTTCCCCGG-GEEEESSHHHHHHHHHHHHCCCCGGGS
T ss_pred CHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcc-cEEEcCCHHHHHHHHHHHHcCCCCCCC
Confidence 4444455454443 356678999999999999999884 887777 999999999999999999999876
Q ss_pred -eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC----CCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 698 -TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV----KKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 698 -~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~----~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
.|+++.|+|+.|...++..|++++.++++++++|.+|+++|++.+++. ..++|++++|+ ||||.++|.+++++|
T Consensus 182 d~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~-NPTG~v~s~~~l~~i 260 (498)
T 3ihj_A 182 TGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPG-NPTGQVQSRKCIEDV 260 (498)
T ss_dssp EEEEEEESCCTHHHHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSC-TTTCCCCCHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCC-CCCCCcCCHHHHHHH
Confidence 999999999999999999999999999998778999999999998762 23589999998 999999999999999
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCC-CCCCCchhhhhhhhcc-CCCCCCceEEEccCchhc-ccccceeeEEEe--CcHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYE-GWGGWDLEGCLSKLYS-STNSSFNVSLLGGLSLKM-LTGALKFGFLVL--NHPQ 847 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~-~~s~~s~~~~~~~l~~-~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~--~~~~ 847 (903)
+++|+++|++||+||+|..+.|++. .. .++......+.. .++ +.++|+++||||+| |++|+|+||++. .+++
T Consensus 261 ~~la~~~~~~li~De~y~~~~~~~~~~~--~s~~~~~~~~~~~~~~-~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~ 337 (498)
T 3ihj_A 261 IHFAWEEKLFLLADEVYQDNVYSPDCRF--HSFKKVLYEMGPEYSS-NVELASFHSTSKGYMGECGYRGGYMEVINLHPE 337 (498)
T ss_dssp HHHHHHHTCEEEEECTTTTCBCCTTCCC--CCHHHHHHHTCHHHHT-TCCEEEEEESSSSTTCCSSSCCEEEEEESCCHH
T ss_pred HHHHHHcCcEEEEEcCccccccCCCCCc--CCHHHHHHHhcccccC-ceeEEEEeccccccccCcccceEEEEEecCCHH
Confidence 9999999999999999999999764 22 232222211110 000 13689999999999 889999999994 3344
Q ss_pred HHHHHHhCCC-CCCCcHHHHHHHHHHHhcc---cccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPG-LSKPHSTVRYAIKKLLGLR---ERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~---~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+.+... ..+++.+.|.++..++... ++....+.++..++++.|++|++.+.
T Consensus 338 l~~~l~~~~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~ 396 (498)
T 3ihj_A 338 IKGQLVKLLSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTE 396 (498)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887654 6788999999988888410 01112233455678888999998875
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=297.42 Aligned_cols=270 Identities=10% Similarity=0.083 Sum_probs=222.2
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
.++|+|+.|++++++++.+.+++.+.+.. ..+..+..++++++++++++.+|.+.+++ +|++|+|+++++..++.++
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~-~v~~t~g~~~a~~~~~~~l 109 (399)
T 1c7n_A 31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTD-WIINTAGVVPAVFNAVREF 109 (399)
T ss_dssp TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHHHHHH
T ss_pred CCceeeeecCCCCCCCHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHHhCCCCChh-hEEEcCCHHHHHHHHHHHh
Confidence 57999999999988899999999888753 12223478999999999999889766666 8999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC-CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 693 ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV-GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~-~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
+++||+|+++.|+|..+...++..|++++.+|++.++ +|.+|++++++.++....++|++++|+ ||||.+++.+++++
T Consensus 110 ~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~-nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 110 TKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH-NPVGRVWKKDELQK 188 (399)
T ss_dssp CCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB-TTTTBCCCHHHHHH
T ss_pred cCCCCEEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCC-CCCCcCcCHHHHHH
Confidence 9999999999999999999999999999999986333 588999999999973333588899997 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhcc-CCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYS-STNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~-~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
|+++|+++|++||+||+|.++.|++... .+ +..+.. . .+++++++||||.+|++|+|+||++++++++++
T Consensus 189 i~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~~---~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~ 259 (399)
T 1c7n_A 189 IKDIVLKSDLMLWSDEIHFDLIMPGYEH--TV----FQSIDEQL---ADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRE 259 (399)
T ss_dssp HHHHHHHSSCEEEEECTTTTCBCTTCCC--CC----GGGSCHHH---HTTEEEEECSHHHHTCGGGCCEEEECCCHHHHH
T ss_pred HHHHHHHcCCEEEEEccccccccCCCCc--cc----HHHcCccc---cCcEEEEEeChhhccccchheEEEEECCHHHHH
Confidence 9999999999999999999988876532 11 111211 0 037999999999999999999999998655888
Q ss_pred HHHhCCC---CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPG---LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~---~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+..... ..+++.+.|.++..+|. .+ .+++++.++.++++++.+.
T Consensus 260 ~l~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 307 (399)
T 1c7n_A 260 RFTKSRDATSGMPFTTLGYKACEICYK--EC-----GKWLDGCIKVIDKNQRIVK 307 (399)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCHHHHHHHHHHHh--CC-----hHHHHHHHHHHHHHHHHHH
Confidence 8876543 23678999999999984 22 3567777777877777664
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=301.99 Aligned_cols=290 Identities=16% Similarity=0.204 Sum_probs=236.7
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l 661 (903)
++.++.+++++.+..+.. +.. ....+++.|+|+.|.+++++++.+.+++ +.+.. |....|..++++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~~~y~~~~g~~~l~~~la~~~ 92 (409)
T 2gb3_A 16 FSDRVLLTEESPIRKLVPFAEM--AKKRGVRIHHLNIGQPDLKTPEVFFERI-YENKPEVVYYSHSAGIWELREAFASYY 92 (409)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHH--HHHTTCEEEECSSCCCCSCCCTHHHHHH-HHTCCSSCCCCCTTCCHHHHHHHHHHH
T ss_pred HHHHhhcCCccHHHHHHHHHHH--HHhcCCCEEeccCCCCCCCCCHHHHHHH-HHHhcCCCCCCCCCCcHHHHHHHHHHH
Confidence 667777777776655443 111 1135778999999999988888899999 77643 444567889999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
.+.+|.+.+++ +|++|+|+++++..++.+++++||+|+++.|+|+.+...++..|++++.+|++++++|.+ ++.|++.
T Consensus 93 ~~~~g~~~~~~-~v~~~~g~t~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~ 170 (409)
T 2gb3_A 93 KRRQRVDVKPE-NVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESF 170 (409)
T ss_dssp HHTSCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGG
T ss_pred HHHhCCCCCHH-HEEEeCCHHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHh
Confidence 99889877766 999999999999999999999999999999999999999999999999999976456766 8889888
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+.+.+++... + .+ .... +++
T Consensus 171 l~~~~-~~v~~~~p~-nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~---~---~~---~~~~---~~~ 236 (409)
T 2gb3_A 171 INERT-KGIVLSNPC-NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFA---S---AL---SIES---DKV 236 (409)
T ss_dssp CCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCC---C---GG---GSCC---TTE
T ss_pred hCcCC-eEEEECCCC-CCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCC---C---cc---ccCC---CCE
Confidence 87655 589999997 999999999999999999999999999999999888876332 1 11 2211 479
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCCC-CCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLS-KPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~-~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
++++||||.+|++|+|+||++++++++++.+....... +++.+.|.++..+|+ .+ ..+++++++.++++++.
T Consensus 237 i~~~s~sK~~g~~G~r~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~ 309 (409)
T 2gb3_A 237 VVIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLN--LD-----DSFFDFVRETYRERVET 309 (409)
T ss_dssp EEEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT--CC-----HHHHHHHHHHHHHHHHH
T ss_pred EEEecchhccCCccceEEEEEECcHHHHHHHHHHHhccCCCCHHHHHHHHHHHh--cc-----HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999923888887654322 888999999999994 22 35677777888888777
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 310 l~ 311 (409)
T 2gb3_A 310 VL 311 (409)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=297.51 Aligned_cols=274 Identities=16% Similarity=0.264 Sum_probs=221.1
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHH---------------HHHccCCCCCchHHHHHHHHHHHhhcCCC--CCCCCcEEe
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFE---------------SFARQNMSESEIDVTPSIQQYIKSNFGFP--IDINAEFIY 677 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~---------------al~~y~~~~G~~~lr~ala~~l~~~~G~~--~~pe~~I~v 677 (903)
.+.|+|+.++++++++ .+.+++.+ .+..|....|..++++++++++.+.+|.. .+++ +|++
T Consensus 36 ~~~i~l~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~-~i~~ 113 (428)
T 1iay_A 36 NGVIQMGLAENQLCLD-LIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVM 113 (428)
T ss_dssp TSBEECSSCCCCSSHH-HHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEE
T ss_pred CceeeeccccchhhHH-HHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh-hEEE
Confidence 4689999999887654 67766653 13457667789999999999999888865 5555 8999
Q ss_pred cCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH-HHcCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcEEE
Q 043334 678 ADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA-RFLKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPWVY 751 (903)
Q Consensus 678 t~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~-~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~vi 751 (903)
|+|+++++..++.+++++||.|+++.|+|..+...+ ...|++++.+|++.+++|.+|++++++++++ ...++|+
T Consensus 114 ~~G~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~ 193 (428)
T 1iay_A 114 AGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLI 193 (428)
T ss_dssp EEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccChHHHHHHHHHHhCCCCCeEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEEE
Confidence 999999999999999999999999999999988755 4789999999997656788999999998864 1235889
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccC-----CCCCCceEEEcc
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSS-----TNSSFNVSLLGG 826 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~-----~~~~~~vI~l~S 826 (903)
+++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .++ .. +... .+ .++++++.|
T Consensus 194 l~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~--~~~---~~-~~~~~~~~~~~-~d~viv~~s 265 (428)
T 1iay_A 194 LTNPS-NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF--VSI---AE-ILDEQEMTYCN-KDLVHIVYS 265 (428)
T ss_dssp EESSC-TTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC--CCH---HH-HHTSGGGTTSC-TTSEEEEEE
T ss_pred EcCCC-CCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCc--cCH---HH-hccccccccCC-CCcEEEEec
Confidence 99998 999999999999999999999999999999999887865432 121 11 2111 00 158999999
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|||.||++|+|+||++++++++++.+.+....++++.++|.++..+|. +. +.++++++++++.++++++.+.
T Consensus 266 ~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~l~ 337 (428)
T 1iay_A 266 LSKDMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLS--DE--KFVDNFLRESAMRLGKRHKHFT 337 (428)
T ss_dssp STTTSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTT--CH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCCCCceEEEEEeCCHHHHHHHHHHHhcccCCHHHHHHHHHHhc--Ch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999996555888888766667789999999999994 22 1134577888888888888764
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.7e-31 Score=301.28 Aligned_cols=287 Identities=16% Similarity=0.157 Sum_probs=232.0
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHHc-------cCCCCCchHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFAR-------QNMSESEIDVTPSI 657 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~~-------y~~~~G~~~lr~al 657 (903)
+++++.+++.+.++.+... ..+++.|||+.|.|+.. +++.+.+++.+.+.. |....|..++++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~------~~~~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~l 94 (425)
T 1vp4_A 21 ISKIGQNMKSSIIREILKF------AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQI 94 (425)
T ss_dssp CCHHHHTCCCCCHHHHTTT------TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHH
T ss_pred hhhhhhcCCCcHHHHHHHh------ccCCCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHH
Confidence 5566667777766665431 23567999999987643 677888888877643 44556889999999
Q ss_pred HHHHHhhcCCC-CCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHH
Q 043334 658 QQYIKSNFGFP-IDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEK 736 (903)
Q Consensus 658 a~~l~~~~G~~-~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~ 736 (903)
++++.+++|.+ .+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+|+++ ++ +|++
T Consensus 95 a~~l~~~~g~~~~~~~-~v~~t~G~~~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~~--~d~~ 170 (425)
T 1vp4_A 95 LKLLERMYGITGLDED-NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLED-DG--MDLN 170 (425)
T ss_dssp HHHHHHHHCCCSCCGG-GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE--ECHH
T ss_pred HHHHHhccCCCCCCcc-cEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEEeccCC-CC--CCHH
Confidence 99998877976 5655 999999999999999999999999999999999999999999999999999865 33 8999
Q ss_pred HHHHHhhc--------CCCcEE-EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 737 TLVTILET--------VKKPWV-YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 737 ~L~~~l~~--------~~~~~v-il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
++++.+++ ++ ++| ++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++... .+
T Consensus 171 ~l~~~l~~~~~~~~~~~~-~~v~~~~~~~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~---- 242 (425)
T 1vp4_A 171 VLERKLSEFDKNGKIKQV-KFIYVVSNFH-NPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETV--DP---- 242 (425)
T ss_dssp HHHHHHHHHHHTTCGGGE-EEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCC--CC----
T ss_pred HHHHHHHhhhhcccCCCc-eEEEECCCCC-CCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCC--cC----
Confidence 99998875 33 466 468887 999999999999999999999999999999999988876542 12
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMN 885 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~ 885 (903)
+..++.. +++++++||||.++ +|+|+||++++++ +++.+..... ..+++.+.|.++..+|+ .+ .+++
T Consensus 243 ~~~~~~~----~~~i~~~s~sK~~~-~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~---~~~~ 311 (425)
T 1vp4_A 243 IFKIGGP----ERVVLLNTFSKVLA-PGLRIGMVAGSKE-FIRKIVQAKQSADLCSPAITHRLAARYLE--RY---DLLE 311 (425)
T ss_dssp HHHHHCT----TTEEEEEESTTTTC-GGGCEEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHH--HS---CHHH
T ss_pred HHHhCCC----CCEEEEeccccccc-cccceEEEeeCHH-HHHHHHHHhhhhcCCCCHHHHHHHHHHHh--cC---CHHH
Confidence 2223322 47999999999999 9999999999976 8888876543 45678999999999995 22 2356
Q ss_pred HHHHHHHHHHHHHHHHh
Q 043334 886 AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 886 ~l~~~r~~y~~Rr~~l~ 902 (903)
+++++++.++++++.+.
T Consensus 312 ~~~~~~~~~~~~~~~l~ 328 (425)
T 1vp4_A 312 QLKPTIELYRRKRTVML 328 (425)
T ss_dssp HTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888888887764
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=303.93 Aligned_cols=288 Identities=12% Similarity=0.131 Sum_probs=227.7
Q ss_pred hhhhccCCCC-HHHHHHHHhh-hhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---------cCCCCCchHHHHH
Q 043334 588 STEMIGFSRS-AISVLNSAEL-SITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---------QNMSESEIDVTPS 656 (903)
Q Consensus 588 s~~~~~l~~s-~i~~l~~a~~-a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---------y~~~~G~~~lr~a 656 (903)
+.++..+.++ .+..+..... .....++.++|+|+.|++++++++.+.+++.+.+.+ |....|.++++++
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ 119 (449)
T 3qgu_A 40 NENFGKLRAGYLFPEIARRRKAHQEKNPDAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREA 119 (449)
T ss_dssp CHHHHHCCSCCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHH
T ss_pred hHHHHhCCCcchHHHHHHHHHHHHhhCCCCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHH
Confidence 4445555553 4444443211 111245788999999999999999999999998872 4445678999999
Q ss_pred HHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCE----------EEEecCC
Q 043334 657 IQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKAN----------IVNIPTE 726 (903)
Q Consensus 657 la~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~----------vv~v~~~ 726 (903)
+++++. +|+..+++ +|++|+|+++++..+ .+++++||.|++++|+|.++...++..|++ ++.++++
T Consensus 120 ia~~~~--~g~~~~~~-~i~~t~G~~~al~~~-~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~ 195 (449)
T 3qgu_A 120 VASTFY--GHAGRAAD-EIFISDGSKCDIARI-QMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCN 195 (449)
T ss_dssp HHHHHH--TTTTCCGG-GEEEESCHHHHHHHH-HHHHCSSSCEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECC
T ss_pred HHHHHH--cCCCCCHH-HEEEccCHHHHHHHH-HHHhCCCCEEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecc
Confidence 999998 78777776 999999999999998 888999999999999999999999999999 9999998
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.++++..|++.+ +++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... .+
T Consensus 196 ~~~~~~~~~~~~-----~~~-~~v~l~~p~-NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~--~~--- 263 (449)
T 3qgu_A 196 PDNHFFPDLSKA-----KRT-DIIFFCSPN-NPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCP--KT--- 263 (449)
T ss_dssp GGGTTCCCGGGC-----CCC-SEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSC--SS---
T ss_pred cccCCcCChhHc-----CCC-CEEEEeCCC-CCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCC--CC---
Confidence 766777775432 344 599999997 999999999999999999999999999999999988876432 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH--------HHHhCC--CCCCCcHHHHHHHHHHHhcc
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD--------AFSSFP--GLSKPHSTVRYAIKKLLGLR 876 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~--------~l~~~~--~~~~~s~~~Q~aa~~~L~~~ 876 (903)
+..++.. .+++++++||||.+|++|+|+||++++++ +++ .+.... ...+++.+.|.++..+|.
T Consensus 264 -~~~~~~~---~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~-- 336 (449)
T 3qgu_A 264 -IYEIPGA---DEVAIETCSFSKYAGFTGVRLGWTVVPKA-LKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQ-- 336 (449)
T ss_dssp -GGGSTTG---GGTEEEEEECSGGGTCTTCCCEEEECCTT-CBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTS--
T ss_pred -HhhccCC---CCcEEEEecchhhcCCccceeEEEecCHH-HHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHh--
Confidence 2222221 14799999999999999999999999887 554 343332 256789999999999994
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 877 ERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 877 ~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+. -.++++++++.++++++.+.
T Consensus 337 ~~----~~~~~~~~~~~~~~~~~~l~ 358 (449)
T 3qgu_A 337 PE----GLKEMNAMIKFYKENAQILK 358 (449)
T ss_dssp HH----HHHHHHHHHHHHHHHHHHHH
T ss_pred hc----CHHHHHHHHHHHHHHHHHHH
Confidence 21 13678888888888888775
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=297.35 Aligned_cols=270 Identities=12% Similarity=0.207 Sum_probs=219.6
Q ss_pred CCCeEEccCCCC----CCCCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHh------hcCCCCCCCCcEEec
Q 043334 614 NSGLIHMDVDQS----FLPIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKS------NFGFPIDINAEFIYA 678 (903)
Q Consensus 614 ~~~~IdLs~g~p----~~~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~------~~G~~~~pe~~I~vt 678 (903)
+.++|+|+.|.| .+++++.+.+++.+.+.. |....|..++|+++++++.+ .+|.+.+++ +|++|
T Consensus 32 ~~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~-~v~~~ 110 (416)
T 1bw0_A 32 PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-NVVLC 110 (416)
T ss_dssp CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-GEEEE
T ss_pred CCCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCccCCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcc-eEEEe
Confidence 367999999987 577889999999888753 44456889999999999983 256666666 99999
Q ss_pred CchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 679 DCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 679 ~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
+|+++++..++.+++++||+|+++.|+|+.+...++..|++++.++++.+++|.+|++++++.+++++ +++++++|+ |
T Consensus 111 ~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~-~~v~i~~p~-n 188 (416)
T 1bw0_A 111 SGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDKT-KLLIVTNPS-N 188 (416)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTTE-EEEEEESSC-T
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccCC-eEEEEeCCC-C
Confidence 99999999999999999999999999999999999999999999998765578899999999998665 589999997 9
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCC----CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYE----GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~----~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|||.+++.+++++|+++|+++|++||+||+|.++.|++. .. .+ +..+.. .+++++++||||.|+++
T Consensus 189 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~--~~----~~~~~~----~~~~i~~~s~sK~~~~~ 258 (416)
T 1bw0_A 189 PCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATF--TS----VADFET----TVPRVILGGTAKNLVVP 258 (416)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCC--CC----TTSSCC----SCCEEEEEESTTTTSCG
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCc--cC----HHHccC----CCcEEEEecchhhCCCC
Confidence 999999999999999999999999999999999888765 22 11 122222 24689999999999999
Q ss_pred cceeeEEEeCcH-----HHHHHHHhCC-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHP-----QLVDAFSSFP-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 835 GlRiG~lv~~~~-----~li~~l~~~~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+|+||++++++ .+...+.+.. ...+++.+.|.++..+|+. .. ..+++++++.++++++.+.
T Consensus 259 Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~-----~~~~~~~~~~~~~~~~~l~ 326 (416)
T 1bw0_A 259 GWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLN-TP-----QEHLDQIVAKIEESAMYLY 326 (416)
T ss_dssp GGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHS-SC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhc-cc-----HHHHHHHHHHHHHHHHHHH
Confidence 999999999763 2443333332 2457889999999999951 11 3566777777777777664
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-31 Score=300.75 Aligned_cols=288 Identities=14% Similarity=0.210 Sum_probs=225.3
Q ss_pred HhhhhccCCCC-HHHHHHHH-hhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---------cCCCCCchHHHH
Q 043334 587 KSTEMIGFSRS-AISVLNSA-ELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---------QNMSESEIDVTP 655 (903)
Q Consensus 587 ~s~~~~~l~~s-~i~~l~~a-~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---------y~~~~G~~~lr~ 655 (903)
+++++..++++ .+..+... ........+.++|+|++|++++++|+.+.+++.+.+.. |.+..|..++++
T Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~ 105 (432)
T 3ei9_A 26 RNSNMSKLQAGYLFPEIARRRSAHLLKYPDAQVISLGIGDTTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRA 105 (432)
T ss_dssp CCHHHHHCCSSCHHHHHHHHHHHHHHHCTTCCCEECSSCCCCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHH
T ss_pred cChHHHhCCCCccHHHHHHHHHhhhhcCCCCCeEEccCCCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHH
Confidence 34556667663 66655432 11112345678999999999999999999999998762 334567899999
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCC------------EEEEe
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKA------------NIVNI 723 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~------------~vv~v 723 (903)
++++++.+ |...+++ +|++|+|+++++.. +..++++||.|+++.|+|+++...++..|. +++.+
T Consensus 106 ~ia~~~~~--~~~~~~~-~i~~t~G~~~al~~-l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (432)
T 3ei9_A 106 AIAKTFYG--GLGIGDD-DVFVSDGAKCDISR-LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYM 181 (432)
T ss_dssp HHHHHHHT--TTTCCGG-GEEEESCHHHHHHH-HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEE
T ss_pred HHHHHHHc--cCCCCcc-eEEECCChHHHHHH-HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEe
Confidence 99999985 4444455 99999999999997 577889999999999999999999988884 68889
Q ss_pred cCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCc
Q 043334 724 PTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWD 803 (903)
Q Consensus 724 ~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s 803 (903)
+++.++++..|++. .+++ +++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++... +
T Consensus 182 ~~~~~~~~~~~l~~-----~~~~-~~v~l~~p~-NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~---~ 251 (432)
T 3ei9_A 182 RCTPENGFFPDLST-----VGRT-DIIFFCSPN-NPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPR---S 251 (432)
T ss_dssp ECCGGGTTSCCGGG-----CCCC-SEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCS---S
T ss_pred ccCcccCCcCChhh-----CCCC-CEEEEeCCC-CCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCC---C
Confidence 98866667666443 2344 589999997 999999999999999999999999999999999888876542 1
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH--------HHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL--------VDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l--------i~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+..+... .+++|+++||||+||++|+|+||++++++ + ++.+.+... ..+++.+.|.++..++
T Consensus 252 ----~~~~~~~---~~~~i~~~S~SK~~g~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 323 (432)
T 3ei9_A 252 ----IFEIPGA---EEVAMETASFSNYAGFTGVRLGWTVIPKK-LLYSDGFPVAKDFNRIICTCFNGASNISQAGALACL 323 (432)
T ss_dssp ----GGGSTTG---GGTEEEEEESHHHHCTTTTCCEEEECCTT-CBCTTSCBHHHHHHHHHHHSCCCSCHHHHHHHHHHS
T ss_pred ----hhhcCCC---CCeEEEEecchhccCCcccceEEEEEChH-HhhcchHHHHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 1122222 14799999999999999999999999987 5 677765532 6678899999999998
Q ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 874 GLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 874 ~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
. ..+ .+++.++++.++++++.+.
T Consensus 324 ~-~~~-----~~~~~~~~~~~~~~~~~l~ 346 (432)
T 3ei9_A 324 T-PEG-----LEAMHKVIGFYKENTNIII 346 (432)
T ss_dssp S-HHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred h-ccc-----HHHHHHHHHHHHHHHHHHH
Confidence 3 112 3578888888888888765
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-31 Score=304.10 Aligned_cols=297 Identities=12% Similarity=0.070 Sum_probs=223.8
Q ss_pred hhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC-CCCC----cHHHHHHHHHHHH-------ccCCCCCchHHHHH
Q 043334 589 TEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS-FLPI----PSLVKAAIFESFA-------RQNMSESEIDVTPS 656 (903)
Q Consensus 589 ~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p-~~~~----p~~v~~al~~al~-------~y~~~~G~~~lr~a 656 (903)
.++...+++.+..+..... ....+..|+|++|.+ ++.. .+.+.+++.+... .|.+..|.+++|++
T Consensus 26 ~~~~~~~~~~i~~~~~~~~---~~~~~~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ 102 (448)
T 3meb_A 26 SGFPASPPDAILNLTVLYN---ADTNPKKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEA 102 (448)
T ss_dssp TTCCCCCCCTTHHHHHHHH---HCCCTTCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHH---hCCCCCeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHH
Confidence 4555566666666664322 145566899999998 6543 3455555444331 25556789999999
Q ss_pred HHHHHHhhcCCCC---CCCCcEEe--cCchHHHHHH--HHHHhccCCCeEEEcCCCcHHHHHHHH----HcCCEEEEecC
Q 043334 657 IQQYIKSNFGFPI---DINAEFIY--ADCSQSLFNK--LVLCCILEGGTLCFPAGSNGNYVSAAR----FLKANIVNIPT 725 (903)
Q Consensus 657 la~~l~~~~G~~~---~pe~~I~v--t~Gs~~al~~--ll~~l~~pGD~Vlv~~P~y~~~~~~~~----~~G~~vv~v~~ 725 (903)
+++++ +|.+. +++ +|++ |+|+++++.. .+.+++.+||+|++++|+|++|...++ ..|++++.+|+
T Consensus 103 ia~~l---~g~~~~~~~~~-~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~ 178 (448)
T 3meb_A 103 AQFLM---FGKDSKAAQEG-RIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTY 178 (448)
T ss_dssp HHHHH---HCTTCHHHHTT-CEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECC
T ss_pred HHHHh---cCCCccccCcC-cEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEec
Confidence 99998 36552 234 8999 9999999987 556778899999999999999999999 99999999999
Q ss_pred CCCC-CcccCHHHHHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCC
Q 043334 726 ESEV-GFKMTEKTLVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGW 802 (903)
Q Consensus 726 ~~~~-~f~ld~~~L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~ 802 (903)
.+++ +|.+|++.+++.+++ ....++++++|+ ||||.+++.+++++|+++|+++|+++|+||+|.++.+++...+.+
T Consensus 179 ~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~-NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~ 257 (448)
T 3meb_A 179 LRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAH-NPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAF 257 (448)
T ss_dssp BCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTH
T ss_pred cccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCC-CCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCch
Confidence 4444 688999999999985 223477889997 999999999999999999999999999999999888875211111
Q ss_pred chhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE--Ee--------CcH----HHHHHHHhCC--CCCCCcHHHH
Q 043334 803 DLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL--VL--------NHP----QLVDAFSSFP--GLSKPHSTVR 866 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l--v~--------~~~----~li~~l~~~~--~~~~~s~~~Q 866 (903)
+ +..+.... .++++++||||.||++|+|+||+ ++ +++ .+++.+.... ..++++.+.|
T Consensus 258 ~----~~~~~~~~---~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 330 (448)
T 3meb_A 258 A----VRMFVDAG---VEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGA 330 (448)
T ss_dssp H----HHHHHHTT---CCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred h----HHHHhhcC---CcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHhcccCCccHHHH
Confidence 1 22221221 47999999999999999999998 77 553 3777666543 3677889999
Q ss_pred HHHHHHHhcccc-cchhHHHHHHHHHHHHHHHHHHHh
Q 043334 867 YAIKKLLGLRER-KARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 867 ~aa~~~L~~~~~-~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.++..+|. ++ ..+.+.++++++++.|+++|+.+.
T Consensus 331 ~a~~~~l~--~~~l~~~~~~~~~~~~~~~~~~r~~l~ 365 (448)
T 3meb_A 331 YIVQVIVH--DKRLLQMFYDNVKEMSARIHRMRSLLH 365 (448)
T ss_dssp HHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999994 22 112334568888999999998875
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=285.17 Aligned_cols=263 Identities=11% Similarity=0.126 Sum_probs=217.8
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
..++++|+|+.|++++++++.+.+++.+.+... ..++ ......+++.+++++|++.+ +|++|+|+++++..++.+
T Consensus 13 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~y~-~~~~~~l~~~la~~~~~~~~---~i~~~~g~~~a~~~~~~~ 87 (354)
T 3ly1_A 13 PSTDNPIRINFNENPLGMSPKAQAAARDAVVKA-NRYA-KNEILMLGNKLAAHHQVEAP---SILLTAGSSEGIRAAIEA 87 (354)
T ss_dssp CCSSSCEECSSCCCSSCCCHHHHHHHHHTGGGT-TSCC-HHHHHHHHHHHHHHTTSCGG---GEEEESHHHHHHHHHHHH
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHHHhhC-cCCC-CCchHHHHHHHHHHhCCChH---HEEEeCChHHHHHHHHHH
Confidence 467789999999999999999999998877542 1121 12334555666666676543 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
++++||+|+++.|+|..+...++..|++++.++++. ++.+|++++++.++ +++ ++|++++|+ ||||.+++.+++
T Consensus 88 l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~~~-~~v~l~~p~-nptG~~~~~~~l 163 (354)
T 3ly1_A 88 YASLEAQLVIPELTYGDGEHFAKIAGMKVTKVKMLD--NWAFDIEGLKAAVAAYSGP-SIVYLVNPN-NPTGTITPADVI 163 (354)
T ss_dssp HCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHHHTCSSC-EEEEEESSC-TTTCCCCCHHHH
T ss_pred HhCCCCeEEECCCCchHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHHHhccCCCC-CEEEEeCCC-CCcCCCcCHHHH
Confidence 999999999999999999999999999999999974 47799999999998 555 589999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.+|++.| ++|+++|+||+|.++.+++...+ .+..++... +++++++||||.+|++|+|+||++++++ ++
T Consensus 164 ~~l~~~~-~~~~~li~De~~~~~~~~~~~~~------~~~~~~~~~---~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~ 232 (354)
T 3ly1_A 164 EPWIASK-PANTMFIVDEAYAEFVNDPRFRS------ISPMITQGA---ENIILLKTFSKIHAMAGMRVGYAVAHPT-VI 232 (354)
T ss_dssp HHHHHTC-CTTEEEEEECTTGGGCCCTTCCC------SHHHHHTTC---SSEEEEEESSSTTCCGGGCCEEEECCHH-HH
T ss_pred HHHHHhC-CCCeEEEEeccHHHhccccccCC------HHHHhhhcC---CCEEEEeeChhhccChhhhheeeecCHH-HH
Confidence 9999999 89999999999998887765431 222223321 4799999999999999999999999877 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.......+++.+.|.++..+|. +. +++.+.++.++++++.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~a~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 277 (354)
T 3ly1_A 233 ALMGRYVAGEKINFSGVDAALASMN--DS------AFITYSKKSNDVSRQILL 277 (354)
T ss_dssp HHHGGGTTCSCCCHHHHHHHHHHTT--CH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 9999888778899999999999994 22 567777778888777764
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=296.58 Aligned_cols=299 Identities=11% Similarity=0.051 Sum_probs=229.4
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC-CC----CCcHHHHHHHHH-HHH-----ccCCCCCchHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS-FL----PIPSLVKAAIFE-SFA-----RQNMSESEIDVTPS 656 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p-~~----~~p~~v~~al~~-al~-----~y~~~~G~~~lr~a 656 (903)
++++..++++.+..+..... ...++++|+|+.|.+ ++ ++++.+.+++.+ .+. .|.+..|.+++|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 81 (412)
T 1yaa_A 5 FNNIELLPPDALFGIKQRYG---QDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSN 81 (412)
T ss_dssp TTTCCCCCCCTTHHHHHHHH---TCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hccCcccCCCcHHHHHHHHh---cCCCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcccccCCCCCCCcHHHHHH
Confidence 35566677777776665322 135678999999986 33 467889999888 653 25556789999999
Q ss_pred HHHHHHhhcCCCCCCCCcEEe--cCchHHHHHHH--HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcc
Q 043334 657 IQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKL--VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFK 732 (903)
Q Consensus 657 la~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~l--l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ 732 (903)
+++++.+.+|.+.+++ +|++ |+|+++++..+ +..++.+||+|++++|+|+.+...++..|++++.+++.+++++.
T Consensus 82 ia~~~~~~~~~~~~~~-~i~~~~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 160 (412)
T 1yaa_A 82 AAKIIFGTQSDALQED-RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKS 160 (412)
T ss_dssp HHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTE
T ss_pred HHHHHhcCCCCCCCcc-eEEEEeccchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCc
Confidence 9999987677655666 8999 99999999987 34456799999999999999999999999999999983224678
Q ss_pred cCHHHHHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCC---CCCCCCchhhh
Q 043334 733 MTEKTLVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNY---EGWGGWDLEGC 807 (903)
Q Consensus 733 ld~~~L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~---~~~s~~s~~~~ 807 (903)
+|++++++.+++. .+.++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.|++ .. .+
T Consensus 161 ~d~~~l~~~l~~~~~~~~~~~~~~p~-nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~---~~---- 232 (412)
T 1yaa_A 161 LDLNGFLNAIQKAPEGSIFVLHSCAH-NPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDA---YA---- 232 (412)
T ss_dssp ECHHHHHHHHHHSCTTCEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHT---HH----
T ss_pred cCHHHHHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchh---HH----
Confidence 9999999998764 22244449997 999999999999999999999999999999999888865 22 11
Q ss_pred hhhhccCCCCCC--ceEEEccCchhcccccceeeEEE--e----CcHH----HHHHHHhCC-C-CCCCcHHHHHHHHHHH
Q 043334 808 LSKLYSSTNSSF--NVSLLGGLSLKMLTGALKFGFLV--L----NHPQ----LVDAFSSFP-G-LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 808 ~~~l~~~~~~~~--~vI~l~S~SK~~g~~GlRiG~lv--~----~~~~----li~~l~~~~-~-~~~~s~~~Q~aa~~~L 873 (903)
+..+.... .+ ++++++||||.+|++|+|+||++ + .+++ +++.+.... . ..+++.+.|.++..+|
T Consensus 233 ~~~~~~~~--~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~l 310 (412)
T 1yaa_A 233 VRLGVEKL--STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLL 310 (412)
T ss_dssp HHHHHHHT--TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHh
Confidence 21222111 12 79999999999998899999998 7 2444 777776632 2 5567899999999999
Q ss_pred hcccc-cchhHHHHHHHHHHHHHHHHHHHh
Q 043334 874 GLRER-KARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 874 ~~~~~-~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ +. ..+.++++++++++.++++++.+.
T Consensus 311 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (412)
T 1yaa_A 311 E--TPELTEQWHKDMVTMSSRITKMRHALR 338 (412)
T ss_dssp H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 22 011134688889999999988875
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=294.60 Aligned_cols=298 Identities=11% Similarity=0.043 Sum_probs=231.1
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC-C----CCCcHHHHHHHHHHH--H----ccCCCCCchHHHHH
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS-F----LPIPSLVKAAIFESF--A----RQNMSESEIDVTPS 656 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p-~----~~~p~~v~~al~~al--~----~y~~~~G~~~lr~a 656 (903)
.+++..++++.++.+..... +..++++|+|+.|.+ + .++++.+.+++.+.+ . .|.+..|..++|++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~ 82 (412)
T 1ajs_A 6 FAEVPQAQPVLVFKLIADFR---EDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTC 82 (412)
T ss_dssp TTTCCCCCCCHHHHHHHHHH---TCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHH
T ss_pred hhhCcccCCchHHHHHHHHh---hcCCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHH
Confidence 44677788888888775432 135678999999985 2 246688999988876 1 24456788999999
Q ss_pred HHHHHHhhcCCCCCCCCcEEe--cCchHHHHHHHHH--HhccCC-----CeEEEcCCCcHHHHHHHHHcCCE-EEEecCC
Q 043334 657 IQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVL--CCILEG-----GTLCFPAGSNGNYVSAARFLKAN-IVNIPTE 726 (903)
Q Consensus 657 la~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~--~l~~pG-----D~Vlv~~P~y~~~~~~~~~~G~~-vv~v~~~ 726 (903)
+++++...+|...+++ +|++ |+|+++++..++. .++++| |+|+++.|+|..|...++..|++ ++.++++
T Consensus 83 la~~~~~~~~~~~~~~-~v~~~~t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~ 161 (412)
T 1ajs_A 83 ASRLALGDDSPALQEK-RVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYW 161 (412)
T ss_dssp HHHHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECE
T ss_pred HHHHHhcCCCCccCCC-cEEEEECCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCCceeEEEeee
Confidence 9999977667655555 8999 9999999999853 556899 99999999999999999999999 9999986
Q ss_pred CCCCcccCHHHHHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCC---CCCCC
Q 043334 727 SEVGFKMTEKTLVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNY---EGWGG 801 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~---~~~s~ 801 (903)
.+++|.+|++++++.+++. ...++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++ ..
T Consensus 162 ~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~--- 237 (412)
T 1ajs_A 162 DTEKRGLDLQGFLSDLENAPEFSIFVLHACAH-NPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDA--- 237 (412)
T ss_dssp ETTTTEECHHHHHHHHHHSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHT---
T ss_pred cCCCCccCHHHHHHHHHhCCCCcEEEEECCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccc---
Confidence 4467889999999998752 22366689997 999999999999999999999999999999999888865 22
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe---CcH---HHHHHHHhCC-C-CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL---NHP---QLVDAFSSFP-G-LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~---~~~---~li~~l~~~~-~-~~~~s~~~Q~aa~~~L 873 (903)
+ .+..+...+ +++|+++||||.+|++|+|+||+++ +++ .+++.+.+.. . ..+++.+.|.++..+|
T Consensus 238 ~----~~~~~~~~~---~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l 310 (412)
T 1ajs_A 238 W----AIRYFVSEG---FELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTL 310 (412)
T ss_dssp H----HHHHHHHTT---CCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHH
T ss_pred h----HHHHHhccC---CcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHH
Confidence 1 122222222 5899999999999999999999999 553 1455555422 2 4456889999999999
Q ss_pred hccccc-chhHHHHHHHHHHHHHHHHHHHh
Q 043334 874 GLRERK-ARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 874 ~~~~~~-~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ +.. ...++++++++++.++++++.+.
T Consensus 311 ~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ 338 (412)
T 1ajs_A 311 S--DPELFHEWTGNVKTMADRILSMRSELR 338 (412)
T ss_dssp H--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--CcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 220 01134678888889988888775
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=299.28 Aligned_cols=300 Identities=9% Similarity=-0.005 Sum_probs=214.2
Q ss_pred HhhhhccC---CCCHHHHHHHHhhhhccCCCCCeEEccCCC---CC--CCCcHHHHHHHHHHHHc-----cCCCCCchHH
Q 043334 587 KSTEMIGF---SRSAISVLNSAELSITETPNSGLIHMDVDQ---SF--LPIPSLVKAAIFESFAR-----QNMSESEIDV 653 (903)
Q Consensus 587 ~s~~~~~l---~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~---p~--~~~p~~v~~al~~al~~-----y~~~~G~~~l 653 (903)
.+++..++ ++.++..+.++.++ . +.+.|||++|. ++ .+..+.|+++....++. |.+..|.+++
T Consensus 17 ~~~~~~~v~~~p~d~i~~l~~~~~~---d-~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~~~~Y~p~~G~p~l 92 (420)
T 4h51_A 17 TAERWQKIQAQAPDVIFDLAKRAAA---A-KGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNLDYEYLPISGYQPF 92 (420)
T ss_dssp HHHHHHTCCCCCCCHHHHHHHHHHH---C-CSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHH
T ss_pred hhHHHhCCCCCCCChHHHHHHHHhc---C-CCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCCCCCCCCcCChHHH
Confidence 34444444 45567766654331 3 33489999993 22 23457888887766542 7778999999
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH----HHhccCCCeEEEcCCCcHHHHHHHHHcCCEE-EEecCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV----LCCILEGGTLCFPAGSNGNYVSAARFLKANI-VNIPTESE 728 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll----~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~v-v~v~~~~~ 728 (903)
|+++++++.... .+.... ..+.|.|+++++...+ ..+++|||+|++++|+|++|..+++..|++. ..++..+.
T Consensus 93 r~aia~~~~g~~-~~~~~~-~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~ 170 (420)
T 4h51_A 93 IDEAVKIIYGNT-VELENL-VAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGWKNICTYAYYDP 170 (420)
T ss_dssp HHHHHHHHHC----CGGGE-EEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTCCCEEEEECEEG
T ss_pred HHHHHHHhcCCC-cccccc-ceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCCeEEEeeccccc
Confidence 999999885422 222211 2344777777765544 4456799999999999999999999999974 45555555
Q ss_pred CCcccCHHHHHHHhhcCC--CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 729 VGFKMTEKTLVTILETVK--KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~--~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
+++.+|.+.+.+.+...+ ..++++++|| ||||.+++.+++++|+++|+++++++|+||+|.++.|++...+.+.
T Consensus 171 ~~~~~d~~~~~~~l~~~~~~~~vll~~~p~-NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~--- 246 (420)
T 4h51_A 171 KTVSLNFEGMKKDILAAPDGSVFILHQCAH-NPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYA--- 246 (420)
T ss_dssp GGTEECHHHHHHHHHHSCSSCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHH---
T ss_pred cccCCCHHHHHHHHhccCCCcEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHH---
Confidence 677889998888775432 2356666776 9999999999999999999999999999999999998764321111
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH-------HHhC--CCCCCCcHHHHHHHHHHHhccc
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA-------FSSF--PGLSKPHSTVRYAIKKLLGLRE 877 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~-------l~~~--~~~~~~s~~~Q~aa~~~L~~~~ 877 (903)
.....+. .+++++++||||+|+++|||+||++++.+ ..+. +..+ ...++++...|.++...|.. .
T Consensus 247 -~~~~~~~---~~~~i~~~s~SK~~~~~G~RvG~~~~~~~-~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d-~ 320 (420)
T 4h51_A 247 -ARLFARR---GIEVLLAQSFSKNMGLYSERAGTLSLLLK-DKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSN-N 320 (420)
T ss_dssp -HHHHHHT---TCCCEEEEECTTTSCCGGGCEEEEEEECS-CHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHS-H
T ss_pred -HHhHHhh---CceEEEEeccccccccccCceEEEEeccc-CHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcC-H
Confidence 1111122 25899999999999999999999998754 3332 2222 23788899999999999952 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 878 RKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 878 ~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.....++++++.+++.|++||+.++
T Consensus 321 ~l~~~~~~~~~~m~~r~~~~R~~l~ 345 (420)
T 4h51_A 321 ELRKEWEAELSAMAERIRTMRRTVY 345 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234466788899999999999885
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=289.62 Aligned_cols=268 Identities=15% Similarity=0.171 Sum_probs=217.9
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchH-HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEID-VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~-lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
+++|+|+.|++++++++.+.+++.+.+... .+..+..+ +++++++++.+.+|.+.+++ +|++|+|+++++..++.+
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~~lr~~la~~l~~~~g~~~~~~-~v~~t~g~~~al~~~~~~ 106 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQ-TVVYGPSVIYMVSELIRQ 106 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGG-GEEEESCHHHHHHHHHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCHH-HEEEcCCHHHHHHHHHHH
Confidence 478999999999889999999999887541 22223678 99999999999889776666 999999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC-CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV-GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~-~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++++||+|+++.|+|..+...++..|++++.+|++.++ +|.+|++++++.+++...++|++++|+ ||||.+++.++++
T Consensus 107 l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~-nptG~~~~~~~l~ 185 (390)
T 1d2f_A 107 WSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ-NPTGKVWTCDELE 185 (390)
T ss_dssp SSCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC-TTTCCCCCTTHHH
T ss_pred hcCCCCEEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCC-CCCCcCcCHHHHH
Confidence 99999999999999999999999999999999997543 578999999999976333588889997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|+++|+++|++||+||+|.++.+++... .+ +..+... ...+ ++||||.+|++|+|+||++++++++++
T Consensus 186 ~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~----~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 186 IMADLCERHGVRVISDEIHMDMVWGEQPH--IP----WSNVARG----DWAL-LTSGSKSFNIPALTGAYGIIENSSSRD 254 (390)
T ss_dssp HHHHHHHHTTCEEEEECTTTTCBCSSSCC--CC----GGGTCCS----SEEE-EECSHHHHTCGGGCCEEEEECSHHHHH
T ss_pred HHHHHHHHcCCEEEEEccccccccCCCCC--cC----HHHcchh----hHhh-ccCccHhhcccChhheEEEECCHHHHH
Confidence 99999999999999999999988876542 11 1222210 0123 999999999999999999997544888
Q ss_pred HHHhCC---C-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFP---G-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~---~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.... . ..+++.+.|.++..+|. .. .+++++.++.++++++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 303 (390)
T 1d2f_A 255 AYLSALKGRDGLSSPSVLALTAHIAAYQ--QG-----APWLDALRIYLKDNLTYIA 303 (390)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHHh--cC-----HHHHHHHHHHHHHHHHHHH
Confidence 776543 2 34788999999998884 22 3567778888888877764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=291.49 Aligned_cols=292 Identities=13% Similarity=0.122 Sum_probs=230.9
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHHc------cCCCCCchHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFAR------QNMSESEIDVTPSIQ 658 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~~------y~~~~G~~~lr~ala 658 (903)
+++++..+.++.++.+...... ....|.+.|||+.|.++.. +++.+.+++.+.+.. |....|..+++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~~~~~l~~~la 85 (407)
T 2zc0_A 7 LAGRANWIKGSALADVMKKASE-LQKKGVKLISLAAGDPDPELIPRAVLGEIAKEVLEKEPKSVMYTPANGIPELREELA 85 (407)
T ss_dssp SCGGGGGCCCCHHHHHHHHHHH-HHHSSCCCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGGGGSCCCTTCCHHHHHHHH
T ss_pred hhhhhccCCchHHHHHHHhhhc-ccCCCCceEeCCCCCCCchhCCHHHHHHHHHHHHhhccccccCCCCCCCHHHHHHHH
Confidence 4566677777777766642210 0124558999999987654 677888888887754 445567899999999
Q ss_pred HHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH
Q 043334 659 QYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL 738 (903)
Q Consensus 659 ~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L 738 (903)
+++.+.+|.+.+++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+|+++ ++ +|++++
T Consensus 86 ~~~~~~~g~~~~~~-~v~~t~g~t~a~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~-~~--~d~~~l 161 (407)
T 2zc0_A 86 AFLKKYDHLEVSPE-NIVITIGGTGALDLLGRVLIDPGDVVITENPSYINTLLAFEQLGAKIEGVPVDN-DG--MRVDLL 161 (407)
T ss_dssp HHHHHHSCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEET-TE--ECHHHH
T ss_pred HHHHHhcCCCCCcc-eEEEecCHHHHHHHHHHHhcCCCCEEEEeCCChHHHHHHHHHcCCEEEEcccCC-CC--CCHHHH
Confidence 99998889766666 999999999999999999999999999999999999999999999999999865 33 899999
Q ss_pred HHHhh----c--CCCcEE-EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 739 VTILE----T--VKKPWV-YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 739 ~~~l~----~--~~~~~v-il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
++.++ + ++ ++| ++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.+++... .+ +..+
T Consensus 162 ~~~l~~~~~~~~~~-~~v~~~~~~~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~~ 233 (407)
T 2zc0_A 162 EEKIKELKAKGQKV-KLIYTIPTGQ-NPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDI--VP----LKAL 233 (407)
T ss_dssp HHHHHHHHHTTCCE-EEEEECCSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSC--CC----GGGG
T ss_pred HHHHHhhhcccCCc-eEEEECCCCC-CCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCC--CC----hhhc
Confidence 99987 5 33 455 467776 999999999999999999999999999999999988876532 11 2223
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHH-HHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLM-NAVA 888 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~-~~l~ 888 (903)
+. .+++++++||||.++ +|+|+||++++++ +++.+..... ..+++++.|.++..+|+ .. .++ ++++
T Consensus 234 ~~----~~~~i~~~s~sK~~~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~~~~~ 302 (407)
T 2zc0_A 234 DN----EGRVIVAGTLSKVLG-TGFRIGWIIAEGE-ILKKVLMQKQPIDFCAPAISQYIALEYLK--RG---YFEKYHLE 302 (407)
T ss_dssp CS----SCCEEEEEESTTTTC-TTSCCEEEECCHH-HHHHHHHHHTTTTSSSCHHHHHHHHHHHH--TT---HHHHHTTT
T ss_pred CC----CCCEEEEcccccccC-CCcceEEEecCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHH--cC---CchHHHHH
Confidence 22 147999999999999 9999999999876 9888886543 45678999999999994 22 234 5566
Q ss_pred HHHHHHHHHHHHHh
Q 043334 889 EHIRNLESRSKRLK 902 (903)
Q Consensus 889 ~~r~~y~~Rr~~l~ 902 (903)
++++.++++++.+.
T Consensus 303 ~~~~~~~~~~~~l~ 316 (407)
T 2zc0_A 303 GALLGYKEKRDIML 316 (407)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=293.46 Aligned_cols=295 Identities=10% Similarity=0.024 Sum_probs=215.2
Q ss_pred hccCCCCHHHHHHHHhhhhccCCCCCeEEccCCC---CCC--CCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHH
Q 043334 591 MIGFSRSAISVLNSAELSITETPNSGLIHMDVDQ---SFL--PIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 591 ~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~---p~~--~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~ 660 (903)
+..++++.+..+..... ...+++.|||+.|. ++. ++++.+.+++.+.+. .|.+..|..++|++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~ 81 (396)
T 2q7w_A 5 ITAAPADPILGLADLFR---ADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQEL 81 (396)
T ss_dssp CCCCCC--------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHh---ccCCCCceecccccccCCCCCccCcHHHHHHHHhhcCcccccCCCCCCCCHHHHHHHHHH
Confidence 44555666655553211 12456799999998 332 467889999887764 255567889999999999
Q ss_pred HHhhcCCCCCCCCcEEe--cCchHHHHHHHHHHh--ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHH
Q 043334 661 IKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCC--ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEK 736 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l--~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~ 736 (903)
+.+..+.+.+++ +|++ |+|+++++..++..+ +.+||+|+++.|+|..|...++..|++++.+|++.+++|.+|++
T Consensus 82 ~~~~~~~~~~~~-~v~~~~~~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~ 160 (396)
T 2q7w_A 82 LFGKGSALINDK-RARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD 160 (396)
T ss_dssp HHCTTCHHHHTT-CEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHH
T ss_pred HhcCCCCccccc-cEEEEecccchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHH
Confidence 976544333445 8988 999999999988766 46999999999999999999999999999999864456889999
Q ss_pred HHHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCC--CCCCCCchhhhhhhhc
Q 043334 737 TLVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNY--EGWGGWDLEGCLSKLY 812 (903)
Q Consensus 737 ~L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~--~~~s~~s~~~~~~~l~ 812 (903)
++++.+++. ...++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++ .. .+ +..+.
T Consensus 161 ~l~~~l~~~~~~~~~v~~~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~---~~----~~~~~ 232 (396)
T 2q7w_A 161 ALINSLNEAQAGDVVLFHGCCH-NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDA---EG----LRAFA 232 (396)
T ss_dssp HHHHHHTTCCTTCEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHT---HH----HHHHH
T ss_pred HHHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchh---HH----HHHHH
Confidence 999998753 23467789997 999999999999999999999999999999999888764 22 11 22222
Q ss_pred cCCCCCCceEEEccCchhcccccceeeEEEe--CcH----HHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccc-cchhH
Q 043334 813 SSTNSSFNVSLLGGLSLKMLTGALKFGFLVL--NHP----QLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRER-KARDL 883 (903)
Q Consensus 813 ~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~----~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~-~~~~~ 883 (903)
..+ +++++++||||.+|++|+|+||+++ +++ .+++.+.... ...+++.+.|.++..+|+ +. ..+.+
T Consensus 233 ~~~---~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~ 307 (396)
T 2q7w_A 233 AMH---KELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILS--NDALRAIW 307 (396)
T ss_dssp HHC---SCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHT--SHHHHHHH
T ss_pred hcC---CcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHhc--ChhhHHHH
Confidence 221 4799999999999999999999997 332 3666655432 245568999999999994 21 01124
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043334 884 MNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 884 ~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++++++.++++++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~l~ 326 (396)
T 2q7w_A 308 EQELTDMRQRIQRMRQLFV 326 (396)
T ss_dssp HHHHHHC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888775
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=292.56 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=227.5
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
+.+.|+|++|++++++++.+.+++.+.+.. +.+.....++++++++++++.+|.+.+++ +|++|+|+++++..++.+
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~~g~~ea~~~a~~~ 138 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKE-DILFIDGVVPAISIALQA 138 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESCHHHHHHHHHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEcCCHHHHHHHHHHH
Confidence 678999999999999999999999998865 23333458899999999999999777666 999999999999999999
Q ss_pred hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC-CCCCcccCHHHHHHHhh-cCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 692 CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE-SEVGFKMTEKTLVTILE-TVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~-~~~~f~ld~~~L~~~l~-~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
++++||+|+++.|+|.++...++..|.+++.+|++ .+++|.+|+++|+++++ +++ ++|++++|+ ||||.+++.+++
T Consensus 139 ~~~~gd~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~-~~vil~~p~-nptG~~~~~~~l 216 (421)
T 3l8a_A 139 FSEKGDAVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNV-KIYLLCSPH-NPGGRVWDNDDL 216 (421)
T ss_dssp HSCTEEEEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTE-EEEEEESSB-TTTTBCCCHHHH
T ss_pred hcCCCCEEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCC-eEEEECCCC-CCCCCcCCHHHH
Confidence 99999999999999999999999999999999987 45668899999999998 455 589999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|.++|+++|++||+||+|.++.+++... .+ +..+.... .++++++.|+||.+|++|+|+||+++++++++
T Consensus 217 ~~l~~l~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~~--~~~~i~~~s~sK~~g~~G~~~G~~~~~~~~l~ 288 (421)
T 3l8a_A 217 IKIAELCKKHGVILVSDEIHQDLALFGNTH--HS----LNTLDASY--KDFTIILSSATKTFNIAGTKNSFAIIQNESLR 288 (421)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGGSCTTG--GGTEEEEECSHHHHTCGGGCCEEEECCSHHHH
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCC--cc----HHHcCchh--cCcEEEEEeChhhccCchhheEeEEcCCHHHH
Confidence 999999999999999999999999887643 11 12221100 14799999999999999999999999955588
Q ss_pred HHHHhCC---CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFP---GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~---~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.... ...+++.+.|.++.+++. .. +++++++++.++++++.+.
T Consensus 289 ~~~~~~~~~~~~~~~n~~~~~a~~aal~--~~-----~~~~~~~~~~~~~~~~~l~ 337 (421)
T 3l8a_A 289 RKFQYRQLANNQHEVPTVGMIATQAAFQ--YG-----KPWLEELKTVIEGNIKLVI 337 (421)
T ss_dssp HHHHHHHHHTTCSCCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHh--cc-----HHHHHHHHHHHHHHHHHHH
Confidence 8887654 255788999999999994 22 3567777777777777664
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=284.10 Aligned_cols=258 Identities=12% Similarity=0.106 Sum_probs=212.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
..+++|+|+.|+|++++++.+.+++.+.+... .+..+..++++++++++ |++. + +|++|+|+++++..++.
T Consensus 30 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~----~~~~--~-~v~~~~g~t~a~~~~~~ 102 (363)
T 3ffh_A 30 GLTKITKLSSNENPLGTSKKVAAIQANSSVETEIYPDGWASSLRKEVADFY----QLEE--E-ELIFTAGVDELIELLTR 102 (363)
T ss_dssp TCSCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC----CHHHHHHHHHHH----TCCG--G-GEEEESSHHHHHHHHHH
T ss_pred CCCceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHh----CCCh--h-hEEEeCCHHHHHHHHHH
Confidence 45689999999999999999999988765431 23345666666666655 5543 3 89999999999999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+++++||+|+++.|+|..+...++..|++++.+|+++ ++.+|++++++.+++++ ++|++++|+ ||||.+++.+++.
T Consensus 103 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~~p~-nptG~~~~~~~l~ 178 (363)
T 3ffh_A 103 VLLDTTTNTVMATPTFVQYRQNALIEGAEVREIPLLQ--DGEHDLEGMLNAIDEKT-TIVWICNPN-NPTGNYIELADIQ 178 (363)
T ss_dssp HHCSTTCEEEEEESSCHHHHHHHHHHTCEEEEEECCT--TSCCCHHHHHHHCCTTE-EEEEEESSC-TTTCCCCCHHHHH
T ss_pred HHccCCCEEEEcCCChHHHHHHHHHcCCEEEEecCCC--CCCcCHHHHHHhcccCC-CEEEEeCCC-CCcCCCcCHHHHH
Confidence 9999999999999999999999999999999999975 57799999999998766 599999997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|++.|++ |+++|+||+|+++.+ +...+ ....... .+++++++||||.+|++|+|+||++++++ +++
T Consensus 179 ~l~~~~~~-~~~li~De~~~~~~~-~~~~~------~~~~~~~----~~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~ 245 (363)
T 3ffh_A 179 AFLDRVPS-DVLVVLDEAYIEYVT-PQPEK------HEKLVRT----YKNLIITRTFSKIYGLASARVGYGIADKE-IIR 245 (363)
T ss_dssp HHHTTSCT-TSEEEEECTTGGGCS-SCCCC------CGGGGGT----CTTEEEEEESSSTTCCSSCCCEEEEECHH-HHH
T ss_pred HHHHhCCC-CcEEEEeCchHhhcC-ccccC------HHHHhhc----CCCEEEEeechhhhcCchhceeeeecCHH-HHH
Confidence 99998888 999999999988777 43321 1222222 25899999999999999999999999776 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.......+++.+.|.++..+|. +. +++++.++.++++++.+.
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 289 (363)
T 3ffh_A 246 QLNIVRPPFNTTSIGQKLAIEAIK--DQ------AFIGECRTSNANGIKQYE 289 (363)
T ss_dssp HHHHTCCSCCCBHHHHHHHHHHHH--CH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 999888888899999999999994 22 566777777777777664
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=285.61 Aligned_cols=259 Identities=14% Similarity=0.122 Sum_probs=213.9
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
..+++|+|+.|++++++++.+++++.+.+.. |....+ .++++++++++ |++. + +|++|+|+++++..++
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~~----~~~~--~-~v~~~~g~~~a~~~~~ 99 (365)
T 3get_A 28 GVKEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDSM-IELKSTLAQKY----KVQN--E-NIIIGAGSDQVIEFAI 99 (365)
T ss_dssp TCSCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHH----TCCG--G-GEEEESSHHHHHHHHH
T ss_pred CCCceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCCh-HHHHHHHHHHh----CCCc--c-eEEECCCHHHHHHHHH
Confidence 3478999999999999999999999988754 322333 66677766654 6543 3 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.+++++||+|+++.|+|..+...++..|++++.+++ .++++ +|++++++++++++ ++|++++|+ ||||.+++.+++
T Consensus 100 ~~l~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~-~d~~~l~~~l~~~~-~~v~~~~p~-nptG~~~~~~~l 175 (365)
T 3get_A 100 HSKLNSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQS-ITHNL-DEFKKLYETHKDEI-KLIFLCLPN-NPLGECLDASEA 175 (365)
T ss_dssp HHHCCTTCEEEECSSCCTHHHHHHHHHTCEEEECSS-SSCCH-HHHHHHHHHTTTTE-EEEEEESSC-TTTCCCCCHHHH
T ss_pred HHHhCCCCEEEEeCCChHHHHHHHHHcCCEEEEEec-CCCCC-CCHHHHHHHhCCCC-CEEEEcCCC-CCCCCCcCHHHH
Confidence 999999999999999999999999999999999998 33568 99999999998666 589999998 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCcc--CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEF--NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f--~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
.+|+++| ++|++||+||+|+++.| .+... .+ ........ +++++++||||.+|++|+|+||++++++
T Consensus 176 ~~l~~~~-~~~~~li~De~~~~~~~~~~~~~~--~~---~~~~~~~~----~~~i~~~s~sK~~~~~G~r~G~~~~~~~- 244 (365)
T 3get_A 176 TEFIKGV-NEDCLVVIDAAYNEFASFKDSKKH--LE---PCELIKEF----DNVLYLGTFSKLYGLGGLRIGYGIANAN- 244 (365)
T ss_dssp HHHHHTS-CTTSEEEEECTTHHHHHHHCGGGC--CC---HHHHHHHC----TTEEEEEESSSTTSCTTTCCEEEEECHH-
T ss_pred HHHHHhC-CCCcEEEEeCccHHHhcccCCccc--cc---HhHHhccC----CCEEEEeecchHhcCcchheEEEEcCHH-
Confidence 9999998 57999999999987775 43221 11 22222222 4899999999999999999999999776
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+......++++.+.|.++..+|. +. +++++.++.++++++.+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 291 (365)
T 3get_A 245 IISAFYKLRAPFNVSNLALKAAVAAMD--DD------EFTEKTLENNFSQMELYK 291 (365)
T ss_dssp HHHHHHHHSCTTCSCHHHHHHHHHHHT--CH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHHH
Confidence 999999887777899999999999994 22 567778888888877764
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-30 Score=293.59 Aligned_cols=277 Identities=18% Similarity=0.257 Sum_probs=224.1
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHH----------------HccCCCCCchHHHHHHHHHHHhhcC--CCCCCCCc
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESF----------------ARQNMSESEIDVTPSIQQYIKSNFG--FPIDINAE 674 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al----------------~~y~~~~G~~~lr~ala~~l~~~~G--~~~~pe~~ 674 (903)
++..+|+|+.+++.+. .+.+.+++.+.. ..|....|.+++++++++++.+.+| ++.+++ +
T Consensus 36 ~p~~~i~lg~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~ 113 (435)
T 3piu_A 36 NTNGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-H 113 (435)
T ss_dssp BTTSBEECSSCCCCSS-HHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-G
T ss_pred CCCCeEEecccccccc-HHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-H
Confidence 3456899999998876 556666665532 2466678899999999999986555 445555 9
Q ss_pred EEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCC
Q 043334 675 FIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFKMTEKTLVTILET------VKK 747 (903)
Q Consensus 675 I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~ 747 (903)
|++|+|+++++..++.+++++||.|+++.|+|..+...+. ..|++++.++++.+++|.+|++++++++++ ++
T Consensus 114 v~~~~gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~- 192 (435)
T 3piu_A 114 LVLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRV- 192 (435)
T ss_dssp EEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCE-
T ss_pred EEEcCChHHHHHHHHHHhcCCCCeEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCe-
Confidence 9999999999999999999999999999999999998887 789999999998777899999999999876 34
Q ss_pred cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh--c---cCCCCCCceE
Q 043334 748 PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL--Y---SSTNSSFNVS 822 (903)
Q Consensus 748 ~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l--~---~~~~~~~~vI 822 (903)
++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... .+........ + ..+ ++++
T Consensus 193 ~~v~i~~p~-nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~---~~~i 266 (435)
T 3piu_A 193 KGVLVTNPS-NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF--ISVMEVLKDRNCDENSEVW---QRVH 266 (435)
T ss_dssp EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC--CCHHHHHHC-------CGG---GGEE
T ss_pred EEEEEcCCC-CCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC--cCHHHhccccccccccCCC---CCEE
Confidence 589999997 999999999999999999999999999999999888877543 2221111100 0 001 4899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++||||.+|++|+|+||++++++.+++.+.+.......+++.|.++..+|. .. +.+++++.+.++.++++++.+.
T Consensus 267 ~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~l~ 342 (435)
T 3piu_A 267 VVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLS--DK--KLTKNYIAENHKRLKQRQKKLV 342 (435)
T ss_dssp EEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHH--CH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeeecccCCCceeEEEEEeCCHHHHHHHHHHhhcCCCCHHHHHHHHHHhc--Ch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999997665888887766666788999999999994 22 2235677888888888888764
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=297.41 Aligned_cols=271 Identities=17% Similarity=0.191 Sum_probs=220.3
Q ss_pred CCCeEEccCCCC-CCCCcHHH--HHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCc---EEecCchH
Q 043334 614 NSGLIHMDVDQS-FLPIPSLV--KAAIFESFA-----RQNMSESEIDVTPSIQQYIKSNFGFPIDINAE---FIYADCSQ 682 (903)
Q Consensus 614 ~~~~IdLs~g~p-~~~~p~~v--~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~---I~vt~Gs~ 682 (903)
.+++|||+.|+| +++.++.+ .+++.+.+. .|....|..++++++++++.+.+ ...+++ + |++|+|++
T Consensus 46 ~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~-~~~~~~-~~~~i~~t~g~~ 123 (430)
T 2x5f_A 46 KSTTYNATIGMATNKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDN-PELSID-NMSRPIVTNALT 123 (430)
T ss_dssp TTCSEECCCSSCEETTEECCCHHHHTTBSSCCGGGTSSCCCTTCCHHHHHHHHHHHHHHC-TTCCGG-GBCCCEEESHHH
T ss_pred CCCcEEeeeeeccCCCCchhhHHHHHHHHhcCcccccccCCCCCCHHHHHHHHHHHhccC-cccCCC-ccceEEEcCCch
Confidence 357899999999 88766655 666554432 35555689999999999998764 555666 7 99999999
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH-cCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCC
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF-LKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTIN 758 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~-~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~N 758 (903)
+++..++.+++++||+|+++.|+|+.+...++. .|++++.++++.++ |.+|++++++.+++ ++ +++++++|+ |
T Consensus 124 ~al~~~~~~l~~~gd~Vl~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~-~~v~i~~p~-n 200 (430)
T 2x5f_A 124 HGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKD-GHYTTDSLVEALQSYNKDK-VIMILNYPN-N 200 (430)
T ss_dssp HHHHHHHHHHCCTTCEEEEESSCCTHHHHHHTTTTCCEEEEECCBCTT-SCBCSHHHHHHHHHCCSSE-EEEEECSSC-T
T ss_pred HHHHHHHHHHhCCCCEEEEcCCcCccHHHHHHHhcCCeEEEEeccCcc-CCcCHHHHHHHHHhcCCCC-EEEEEcCCC-C
Confidence 999999999999999999999999999999999 99999999987543 77999999999876 44 588999997 9
Q ss_pred CcccCCCHHHHHHHHHHHHh-----CCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc---eEEEccCchh
Q 043334 759 PTGLLYSNKEIENILTVCAK-----YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN---VSLLGGLSLK 830 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k-----~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~---vI~l~S~SK~ 830 (903)
|||.+++.+++++|+++|++ +|++||+||+|.++.|++... .+ ....++... ++ +++++||||.
T Consensus 201 ptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~--~~---~~~~~~~~~---~~~~~~i~~~s~sK~ 272 (430)
T 2x5f_A 201 PTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYT--QS---LFTALTNLH---SNAILPIRLDGATKE 272 (430)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCC--SC---HHHHHHTTC---CTTEEEEEEEEHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccc--hH---HHHHHhhcc---CCcceEEEEEecccC
Confidence 99999999999999999999 999999999999988876532 11 121232221 47 9999999999
Q ss_pred cccccceeeEEEe---CcHHHHHHHHhCC------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 831 MLTGALKFGFLVL---NHPQLVDAFSSFP------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 831 ~g~~GlRiG~lv~---~~~~li~~l~~~~------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
||++|+|+||+++ +++ +++.+.... ...+++.+.|.++..+|+. ++ .+.++++++++.++++++.+
T Consensus 273 ~~~~G~riG~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~l 347 (430)
T 2x5f_A 273 FFAWGFRVGFMTFGTSDQT-TKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKN-NK---QFDKEIEQNIQTLKERYEVT 347 (430)
T ss_dssp TTCGGGCCEEEEEBCCCHH-HHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHS-CH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEEEecCCHH-HHHHHHHHHhhhhhcccCCCChHHHHHHHHHHcc-Ch---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 766 888887643 3567899999999999930 22 23455666888999888877
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 348 ~ 348 (430)
T 2x5f_A 348 K 348 (430)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=286.30 Aligned_cols=282 Identities=12% Similarity=0.159 Sum_probs=224.6
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHh
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~ 663 (903)
+++++..++.+.++.+..... .++.|+|+.|.|++++++.+.+++.+.+.. |....|..+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~------~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~~l~~~la~~--- 73 (381)
T 1v2d_A 3 LHPRTEAAKESIFPRMSGLAQ------RLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEE--- 73 (381)
T ss_dssp CCGGGGGC---CHHHHHHHHH------HHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHH---
T ss_pred hhhhhhhcCccHHHHHHHHHh------cCCeEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHh---
Confidence 355666777777777665332 146899999999998999999999888754 44445777888888776
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC--CCCCcccCHHHHHHH
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTE--SEVGFKMTEKTLVTI 741 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~--~~~~f~ld~~~L~~~ 741 (903)
+|.+ ++ +|++|+|+++++..++.+++++||+|++++|+|..+...++..|++++.++++ + ++|.+|++++++.
T Consensus 74 -~~~~--~~-~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~-~~~~~d~~~l~~~ 148 (381)
T 1v2d_A 74 -FAVE--PE-SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTP-EGFRLDLSALEKA 148 (381)
T ss_dssp -HTSC--GG-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEET-TEEECCHHHHHTT
T ss_pred -cCCC--hh-hEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhHHHHHHHcCCEEEEEeCCCCC-ccCCcCHHHHHHh
Confidence 4554 34 79999999999999999999999999999999999999999999999999986 3 2477999999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.| +... .+ .. .+ .. +++
T Consensus 149 l~~~~-~~v~~~~~~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~--~~---~~-~~-~~----~~~ 214 (381)
T 1v2d_A 149 LTPRT-RALLLNTPM-NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERP--RR---LR-EF-AP----ERT 214 (381)
T ss_dssp CCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCC--CC---HH-HH-CT----TTE
T ss_pred cCcCC-EEEEECCCC-CCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCC--CC---HH-Hh-cC----CCE
Confidence 87655 589999998 9999999999999999999999999999999998888 4321 11 12 12 11 489
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++++|+||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|.. . .+.++++++++.++++++
T Consensus 215 ~~~~s~sK~~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~--~---~~~~~~~~~~~~~~~~~~ 288 (381)
T 1v2d_A 215 FTVGSAGKRLEATGYRVGWIVGPKE-FMPRLAGMRQWTSFSAPTPLQAGVAEALKL--A---RREGFYEALREGYRRRRD 288 (381)
T ss_dssp EEEEEHHHHTTCGGGCCEEEECCTT-THHHHHHHHHHHTSSCCHHHHHHHHHHHHH--H---HHTTHHHHHHHHHHHHHH
T ss_pred EEEeechhhcCCcccceEEEEeCHH-HHHHHHHHHhhcccCCCcHHHHHHHHHHhC--c---ccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887 8888876543 667889999999999941 1 113567777778888777
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 289 ~l~ 291 (381)
T 1v2d_A 289 LLA 291 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=295.26 Aligned_cols=266 Identities=12% Similarity=0.111 Sum_probs=208.2
Q ss_pred CeEEccCCCCC---CCCcHHHHHHHHHHH--------HccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 616 GLIHMDVDQSF---LPIPSLVKAAIFESF--------ARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 616 ~~IdLs~g~p~---~~~p~~v~~al~~al--------~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+|+|+.|+|+ +++++.+++++.+.+ ..|....|.+++|+++++++ |++ ++ +|++|+|++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~----~~~--~~-~i~~t~G~~~a 105 (422)
T 3d6k_A 33 LSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL----GLP--AD-LVVAQDGSSLN 105 (422)
T ss_dssp CCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH----TCC--GG-GEEECSSCHHH
T ss_pred CeEeCCCCCCChhhCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh----CCC--hh-HEEEecchHHH
Confidence 48999999998 777777777665431 24666778999999999887 444 44 89999999998
Q ss_pred H--HHHHHHhccC------------CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEE
Q 043334 685 F--NKLVLCCILE------------GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWV 750 (903)
Q Consensus 685 l--~~ll~~l~~p------------GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~v 750 (903)
+ ..++.+++.+ ||+|++++|+|+.|...++..|++++.+|+++ ++ +|++++++.+++.+.++|
T Consensus 106 l~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~-~g--~d~~~l~~~l~~~~~~~v 182 (422)
T 3d6k_A 106 IMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTD-EG--PDMGVVRELVKDPQVKGM 182 (422)
T ss_dssp HHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCEEEEEEEET-TE--ECHHHHHHHHTSTTEEEE
T ss_pred HHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCCEEEecCCCC-CC--CCHHHHHHHHhcCCCeEE
Confidence 7 6777777766 34799999999999999999999999999975 33 899999999875333466
Q ss_pred E-EECCCCCCcccCCCHHHHHHHHHHHH-hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 751 Y-ISGPTINPTGLLYSNKEIENILTVCA-KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 751 i-l~~P~~NPTG~v~s~eel~eI~~ia~-k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
+ +++|+ ||||.+++.+++++|+++|+ ++|++||+||+|..+.|.....+..++.+.....+. .+++++++|||
T Consensus 183 ~~~~~~~-NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~S~S 257 (422)
T 3d6k_A 183 WTVPVFG-NPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGN----PNRFWFMSSTS 257 (422)
T ss_dssp EECCSSC-TTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTC----TTCEEEEEEST
T ss_pred EEcCCCC-CCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCC----CCcEEEEcChh
Confidence 6 57776 99999999999999999999 999999999999864443321111222111111122 25899999999
Q ss_pred hhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 829 LKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 829 K~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+ ++||+|+||++++++ +++.+..... ..+++.+.|.++..+|+ +. ..+.++++++++.|++|++.+.
T Consensus 258 K~-~~~GlriG~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~l~ 327 (422)
T 3d6k_A 258 KI-THAGSGVSFFASSKE-NIEWYASHANVRGIGPNKLNQLAHAQFFG--DV--AGLKAHMLKHAASLAPKFERVL 327 (422)
T ss_dssp TT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCSCCCHHHHHHHHHHHC--SH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-cCcccceEEEEeCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHh--Cc--chHHHHHHHHHHHHHHHHHHHH
Confidence 98 789999999999977 9998887654 57789999999999994 31 2456889999999999988764
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-29 Score=280.80 Aligned_cols=294 Identities=15% Similarity=0.071 Sum_probs=221.9
Q ss_pred hhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCC---C--CCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHH
Q 043334 590 EMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQS---F--LPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQ 659 (903)
Q Consensus 590 ~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p---~--~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~ 659 (903)
++..++++.+..+..... ...+++.|||+.|.+ + .++++.+.+++.+.+. .|....|.+++|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~ 80 (394)
T 2ay1_A 4 NLKPQAPDKILALMGEFR---ADPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGE 80 (394)
T ss_dssp GCCCCCCCSHHHHHHHHH---HCCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHH
T ss_pred cCccCCCccHHHHHHHHH---hCCCccccccccceeeCCCCCccCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHH
Confidence 345566777776664322 135678999999984 2 2567889999888764 25456788999999999
Q ss_pred HHHhhcCCCCCCCCcEEe--cCchHHHHHHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCH
Q 043334 660 YIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTE 735 (903)
Q Consensus 660 ~l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~ 735 (903)
++... ++ +++ +|++ |+|+++++..++..+.. +||+|+++.|+|..+...++..|++++.++++.+++|.+|+
T Consensus 81 ~~~~~-~~--~~~-~v~~~~~~g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~ 156 (394)
T 2ay1_A 81 LILGD-GL--KSE-TTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDF 156 (394)
T ss_dssp HHHGG-GC--CGG-GEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECH
T ss_pred HHhCC-CC--Ccc-cEEEEecCCchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCH
Confidence 98542 33 344 8998 99999999999887765 99999999999999999999999999999986545688999
Q ss_pred HHHHHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCC-CCCCCchhhhhhhhc
Q 043334 736 KTLVTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYE-GWGGWDLEGCLSKLY 812 (903)
Q Consensus 736 ~~L~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~-~~s~~s~~~~~~~l~ 812 (903)
+++++.+++. ...++++++|+ ||||.+++.+++++|+++|+++|++||+||+|.++.+++. .. . .+..+.
T Consensus 157 ~~l~~~l~~~~~~~~~~~~~~~~-nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~--~----~~~~~~ 229 (394)
T 2ay1_A 157 EGMKADLAAAKKGDMVLLHGCCH-NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDA--A----GTRLIA 229 (394)
T ss_dssp HHHHHHHHTCCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHH--H----HHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCCCC-CCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccch--H----HHHHHh
Confidence 9999998754 22356678997 9999999999999999999999999999999988877531 10 1 122122
Q ss_pred cCCCCCCceEEEccCchhcccccceeeEEEe--CcHHHH----HHHHhC--CCCCCCcHHHHHHHHHHHhcccc-cchhH
Q 043334 813 SSTNSSFNVSLLGGLSLKMLTGALKFGFLVL--NHPQLV----DAFSSF--PGLSKPHSTVRYAIKKLLGLRER-KARDL 883 (903)
Q Consensus 813 ~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~--~~~~li----~~l~~~--~~~~~~s~~~Q~aa~~~L~~~~~-~~~~~ 883 (903)
... +++++++||||.+|++|+|+||+++ ++++++ +.+... ....+++.+.|.++..+|+ +. ..+.+
T Consensus 230 ~~~---~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~~l~~~~ 304 (394)
T 2ay1_A 230 SRI---PEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT--TPELRADW 304 (394)
T ss_dssp HHC---SSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH--SHHHHHHH
T ss_pred hcC---CCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhc--ChHHHHHH
Confidence 211 4799999999999999999999998 433243 333322 2245568899999999994 21 01124
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 043334 884 MNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 884 ~~~l~~~r~~y~~Rr~~l~ 902 (903)
.++++++++.++++++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~ 323 (394)
T 2ay1_A 305 MAELEAVRSGMLRLREQLA 323 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888889988888774
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=287.16 Aligned_cols=260 Identities=18% Similarity=0.192 Sum_probs=201.4
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
..++++|+|+.|++++++++.+.+++.+.+.. |.+..|.+++|+++++++. +|. .+++ +|++|+|++
T Consensus 30 ~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~--~g~-~~~~-~v~~~~G~~ 105 (400)
T 3asa_A 30 NPQHTVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFY--RGF-VDAK-EIFISDGAK 105 (400)
T ss_dssp CTTSCCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTS--TTS-SCGG-GEEEESCHH
T ss_pred cCCCceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHH--cCC-CCHH-HEEEccChH
Confidence 45778999999999988899999998887653 3344578888998888764 564 4445 899999999
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCE-EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKAN-IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~-vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
+++..++ .++++||+|+++.|+|+.+...++..|++ ++.+|+++++++..|++. + +++ ++|++++|+ ||||
T Consensus 106 ~al~~~~-~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~----~-~~~-~~v~l~~p~-nptG 177 (400)
T 3asa_A 106 VDLFRLL-SFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPEFPE----D-THI-DILCLCSPN-NPTG 177 (400)
T ss_dssp HHHHHHH-HHHCSSCEEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCCCCT----T-CCC-SEEEEESSC-TTTC
T ss_pred HHHHHHH-HHcCCCCEEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccChhh----c-cCc-cEEEEeCCC-CCCC
Confidence 9999865 55689999999999999999999999999 999999765566665432 1 344 589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.+++.+++++|+++|+++|++||+||+|.++.+++... .+ +..++..+ +++++++||||.||++|+|+||+
T Consensus 178 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~--~~----~~~~~~~~---~~~i~~~s~sK~~g~~GlriG~~ 248 (400)
T 3asa_A 178 TVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLP--KS----IFEIPDAR---FCAIEINSFSKPLGFAGIRLGWT 248 (400)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSC--SS----GGGSTTGG---GTEEEEEECCGGGTTTTCCCEEE
T ss_pred CcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCC--Cc----hhhCCCCC---CceEEEecchhhcCCcchheeEE
Confidence 99999999999999999999999999998877765421 11 22222211 47999999999999999999999
Q ss_pred EeCcHHH-------HHHHHhC-CC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 842 VLNHPQL-------VDAFSSF-PG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 842 v~~~~~l-------i~~l~~~-~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++ + ++.+... .. ..+++.+.|.++..+|+ ++ +++++++.++++++.+.
T Consensus 249 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-------~~~~~~~~~~~~~~~l~ 309 (400)
T 3asa_A 249 VIPQE-LTYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLS--IL-------PQLEAIHYYRENSDLLR 309 (400)
T ss_dssp ECCTT-CBCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HT-------TTCHHHHHHHHHHHHHH
T ss_pred eeChh-hccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhC--cH-------HHHHHHHHHHHHHHHHH
Confidence 99887 6 5555432 11 34689999999999994 21 34455566666665553
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=282.40 Aligned_cols=283 Identities=17% Similarity=0.149 Sum_probs=223.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHHc-------cCCCCCchHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFAR-------QNMSESEIDVTPSI 657 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~~-------y~~~~G~~~lr~al 657 (903)
+|+++..+..+.++.+.... .++++|+|+.|.++.. +++.+.+++.+.+.+ |....|..++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~------~~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~l 83 (397)
T 2zyj_A 10 FGKGAGRIQASTIRELLKLT------QRPGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFV 83 (397)
T ss_dssp SCGGGGGCCCCHHHHHHHHH------TSTTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHH
T ss_pred hhhhhcccCchHHHHHHhhc------cCCCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHH
Confidence 56677777777776665432 2457899999987643 677888888776642 44455788899998
Q ss_pred HHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHH
Q 043334 658 QQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKT 737 (903)
Q Consensus 658 a~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~ 737 (903)
++++ |++ ++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.+|+++ ++ +|+++
T Consensus 84 a~~~----g~~--~~-~v~~~~g~~~al~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~--~d~~~ 153 (397)
T 2zyj_A 84 AEWI----GVR--PE-EVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGE-EG--PDLDA 153 (397)
T ss_dssp HHHH----TSC--GG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEET-TE--ECHHH
T ss_pred HHHh----CCC--hh-hEEEeccHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHcCCEEEecCcCC-CC--CCHHH
Confidence 8887 543 34 899999999999999999999999999999999999999999999999999865 33 89999
Q ss_pred HHHHhhc-CCCcEE-EEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCC
Q 043334 738 LVTILET-VKKPWV-YISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSST 815 (903)
Q Consensus 738 L~~~l~~-~~~~~v-il~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~ 815 (903)
+++.+++ ++ ++| ++++|+ ||||.+++.+++++|+++|+++|++||+||+|..+.|++... .++ ..++...
T Consensus 154 l~~~l~~~~~-~~v~~~~~~~-nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~--~~~----~~~~~~~ 225 (397)
T 2zyj_A 154 LEEVLKRERP-RFLYLIPSFQ-NPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARL--PSL----FELAREA 225 (397)
T ss_dssp HHHHHHHCCC-SCEEECCBSC-TTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCC--CCH----HHHHHHH
T ss_pred HHHHHhhcCC-eEEEECCCCc-CCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCC--Cch----hhhCccc
Confidence 9999986 45 465 568887 999999999999999999999999999999999988876532 122 2222110
Q ss_pred CCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 816 NSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
..+++++++|+||.++ +|+|+||++++++ +++.+..... ..+.+.+.|.++..+|+ .+ .+ ++++++++.
T Consensus 226 -~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~~l~--~~---~~-~~~~~~~~~ 296 (397)
T 2zyj_A 226 -GYPGVIYLGSFSKVLS-PGLRVAFAVAHPE-ALQKLVQAKQGADLHTPMLNQMLVHELLK--EG---FS-ERLERVRRV 296 (397)
T ss_dssp -TCCCEEEEEESTTTTC-GGGCCEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHT--TT---HH-HHHHHHHHH
T ss_pred -CCCeEEEEeccccccc-ccceeEEEecCHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHH--hC---CH-HHHHHHHHH
Confidence 0037899999999999 9999999999976 8888876543 45668999999999994 32 23 677888888
Q ss_pred HHHHHHHHh
Q 043334 894 LESRSKRLK 902 (903)
Q Consensus 894 y~~Rr~~l~ 902 (903)
++++++.+.
T Consensus 297 ~~~~~~~l~ 305 (397)
T 2zyj_A 297 YREKAQAML 305 (397)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887764
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=277.48 Aligned_cols=256 Identities=16% Similarity=0.270 Sum_probs=212.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--c--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--Q--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
.++++|+|+.|++++++|+.+.+++.+.+.. . ....|..+++++++++ +|.+ +++ +|++|+|+++++..+
T Consensus 28 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~l~~~la~~----~g~~-~~~-~i~~~~g~t~a~~~~ 101 (367)
T 3euc_A 28 DSHGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPVPSSEALRAKLKEV----MQVP-AGM-EVLLGNGSDEIISML 101 (367)
T ss_dssp CCTTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCCCCHHHHHHHHHHH----HTCC-TTC-EEEEEEHHHHHHHHH
T ss_pred CCCCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCcHHHHHHHHHHH----hCCC-Ccc-eEEEcCCHHHHHHHH
Confidence 3467999999999999999999999888763 1 1223556666666655 4663 334 899999999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~e 767 (903)
+.+++++||+|+++.|+|..+...++..|++++.+|++. +|.+|++++++++++ ++ ++|++++|+ ||||.+++.+
T Consensus 102 ~~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~~~~~ 177 (367)
T 3euc_A 102 ALAAARPGAKVMAPVPGFVMYAMSAQFAGLEFVGVPLRA--DFTLDRGAMLAAMAEHQP-AIVYLAYPN-NPTGNLFDAA 177 (367)
T ss_dssp HHHTCCTTCEEEEEESCSCCSCHHHHTTTCEEEEEECCT--TSCCCHHHHHHHHHHHCC-SEEEEESSC-TTTCCCCCHH
T ss_pred HHHHcCCCCEEEEcCCCHHHHHHHHHHcCCeEEEecCCC--CCCCCHHHHHHHhhccCC-CEEEEcCCC-CCCCCCCCHH
Confidence 999999999999999999999999999999999999975 677999999999987 66 599999997 9999999999
Q ss_pred HHHHHHHHHHhC--CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 768 EIENILTVCAKY--GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 768 el~eI~~ia~k~--~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
++++|+++|+++ |+++|+||+|.++.+.+. ...+... +++++++||||. +++|+|+||+++++
T Consensus 178 ~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~----------~~~~~~~----~~~i~~~s~sK~-~~~G~r~G~~~~~~ 242 (367)
T 3euc_A 178 DMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW----------MSRLTDF----GNLLVMRTVSKL-GLAGIRLGYVAGDP 242 (367)
T ss_dssp HHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS----------GGGGGTC----TTEEEEEECCCT-TSCSCCEEEEEECH
T ss_pred HHHHHHHhhhhcCCCcEEEEeCcchhhcccch----------HHHHhhC----CCEEEEecchhh-cccccCceeeeeCH
Confidence 999999999999 999999999987653221 1112222 489999999999 99999999999987
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 846 PQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 846 ~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ +++.+......++++.+.|.++..+|+ . .+++++.++.++++++.+.
T Consensus 243 ~-~~~~~~~~~~~~~~~~~~~~a~~~~l~--~------~~~~~~~~~~~~~~~~~l~ 290 (367)
T 3euc_A 243 Q-WLEQLDKVRPPYNVNVLTEATALFALE--H------VAVLDEQAAQLRAERSRVA 290 (367)
T ss_dssp H-HHHHHGGGCCSSCCCHHHHHHHHHHHT--T------HHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCCCCHHHHHHHHHHhc--C------HHHHHHHHHHHHHHHHHHH
Confidence 7 999999888777899999999999994 2 2566777777777777654
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=300.69 Aligned_cols=261 Identities=10% Similarity=0.130 Sum_probs=204.6
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHH--ccCCCCCchHHHHHHHHHH-HhhcCCC--C-CCCCcEEecCchHHHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFA--RQNMSESEIDVTPSIQQYI-KSNFGFP--I-DINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~--~y~~~~G~~~lr~ala~~l-~~~~G~~--~-~pe~~I~vt~Gs~~al~~ll~ 690 (903)
+|+|++|.+.++ ++.+.+++.+.+. .|....|.+++++++++++ .++++.. . +++ +|++|+|+++++..++.
T Consensus 106 ~i~l~~g~~~~~-~~~~~~al~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~-~I~~t~G~~eal~~~~~ 183 (546)
T 2zy4_A 106 SLSYVRDQLGLD-PAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADAIPSESV-NLFAVEGGTAAMAYIFE 183 (546)
T ss_dssp HHHHHHHTSCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHTTCTTSCGGGE-EEEEEEHHHHHHHHHHH
T ss_pred hhecccCCCCCC-ChHHHHHHHHhhhcCCCCCCcCCHHHHHHHHHHHHHHhccCCCCCCCcc-eEEEECCHHHHHHHHHH
Confidence 789999999875 4556666666653 3666778899998876654 5555432 2 334 99999999999999988
Q ss_pred H-----hccCCCeEEEcCCCcHHHHHHHHHc--CCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 691 C-----CILEGGTLCFPAGSNGNYVSAARFL--KANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~-----l~~pGD~Vlv~~P~y~~~~~~~~~~--G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+ +++|||.|++++|+|+.|...+... |++++.++++++++|.+|++++++.+++++ +++++++|+ ||||.+
T Consensus 184 ~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~-k~v~l~~p~-NPtG~~ 261 (546)
T 2zy4_A 184 SLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKDPAI-KIFFCVNPS-NPPSVK 261 (546)
T ss_dssp HHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTE-EEEEEESSC-SSSCBC
T ss_pred HhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhCCCC-eEEEEECCC-CCCCcc
Confidence 7 5789999999999999999987654 699999999877789999999998876555 589999998 999999
Q ss_pred CCHHHHHHHHHHH--HhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 764 YSNKEIENILTVC--AKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 764 ~s~eel~eI~~ia--~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
++.+++++|+++| +++|++||+||+|+++.++ .. + ... ... +++|+++||||++|+||+|+||+
T Consensus 262 ~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~---s---~~~-~~~-----~~~i~~~S~SK~~g~~GlRiG~~ 327 (546)
T 2zy4_A 262 MDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQ---S---LFA-ICP-----ENTLLVYSFSKYFGATGWRLGVV 327 (546)
T ss_dssp CCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CC---C---HHH-HCG-----GGEEEEEESTTTTTCGGGCEEEE
T ss_pred CCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--Cc---C---HHH-hCC-----CCEEEEEeCccccCCCCcceEEE
Confidence 9999999999999 7899999999999877653 21 1 222 211 48999999999999999999999
Q ss_pred EeCcHHHHHHHHhC------------------------------------CC--CCCCcHHHHHHH-----HHHHhcccc
Q 043334 842 VLNHPQLVDAFSSF------------------------------------PG--LSKPHSTVRYAI-----KKLLGLRER 878 (903)
Q Consensus 842 v~~~~~li~~l~~~------------------------------------~~--~~~~s~~~Q~aa-----~~~L~~~~~ 878 (903)
+++++++++.+.+. .. ..+++.+.|.++ ..++ +++
T Consensus 328 ~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all--~~~ 405 (546)
T 2zy4_A 328 AAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALM--DEA 405 (546)
T ss_dssp EEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHH--CTT
T ss_pred EECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHH--hcc
Confidence 99874477766321 11 346788888874 2344 222
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 043334 879 KARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 879 ~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+++++++.|++|++.+.
T Consensus 406 -----~~~~~~~r~~~~~r~~~l~ 424 (546)
T 2zy4_A 406 -----DEYKHTLKQLIRRRETTLY 424 (546)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999875
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=282.45 Aligned_cols=251 Identities=16% Similarity=0.215 Sum_probs=203.3
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~ 694 (903)
.++|+|+.|+|++++|+.+ ++ ..+..|.. .+..++|+++++++ |++. + +|++|+|+++++..++.++++
T Consensus 29 ~~~i~l~~~~~~~~~~~~v--a~-~~~~~Y~~-~~~~~lr~~la~~~----~~~~--~-~v~~~~G~~~ai~~~~~~~~~ 97 (356)
T 1fg7_A 29 NGDVWLNANEYPTAVEFQL--TQ-QTLNRYPE-CQPKAVIENYAQYA----GVKP--E-QVLVSRGADEGIELLIRAFCE 97 (356)
T ss_dssp TCSEECSSCCCSSCCCCCC--CC-CCTTSCCC-SSCHHHHHHHHHHH----TSCG--G-GEEEESHHHHHHHHHHHHHCC
T ss_pred CceEEeeCCCCCCCCCHhH--hh-hhhccCCC-ccHHHHHHHHHHHh----CCCh--H-HEEEcCCHHHHHHHHHHHHhC
Confidence 3689999999999887766 22 11223433 34677888887766 5543 3 899999999999999999999
Q ss_pred CC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 695 EG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 695 pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
+| |+|+++.|+|..|...++..|++++.+|++ ++|.+|++++++.++ ++ +++++++|+ ||||.+++.+++++|+
T Consensus 98 ~g~d~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~-~~-~~v~l~~p~-nptG~~~~~~~l~~l~ 172 (356)
T 1fg7_A 98 PGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GV-KVVYVCSPN-NPTGQLINPQDFRTLL 172 (356)
T ss_dssp TTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TE-EEEEEESSC-TTTCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCCChHHHHHHHHHcCCEEEEeeCC--CCCCCCHHHHHHHhc-CC-CEEEEeCCC-CCCCCCCCHHHHHHHH
Confidence 99 999999999999999999999999999986 357899999999887 55 589999998 9999999999999999
Q ss_pred HHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
++|+ +|++||+||+|.++.. +.. .....+.. +++++++||||.||++|+|+||++++++ +++.+.
T Consensus 173 ~~~~-~~~~li~De~~~~~~~-~~~--------~~~~~~~~----~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~~l~ 237 (356)
T 1fg7_A 173 ELTR-GKAIVVADEAYIEFCP-QAS--------LAGWLAEY----PHLAILRTLSKAFALAGLRCGFTLANEE-VINLLM 237 (356)
T ss_dssp HHHT-TTCEEEEECTTGGGSG-GGC--------SGGGTTTC----TTEEEEEESSSTTCCGGGCCEEEEECHH-HHHHHH
T ss_pred HhCC-CCCEEEEEccchhhcC-CCc--------HHHHHhhC----CCEEEEecchHhhcCchhhhEEEEeCHH-HHHHHH
Confidence 9999 9999999999976541 111 11111222 4799999999999999999999999876 999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 854 SFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 854 ~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.....++++.+.|.++.++|. +. .+ +++++.++.++++++.+.
T Consensus 238 ~~~~~~~~~~~~~~a~~~~l~--~~---~~-~~~~~~~~~~~~~~~~l~ 280 (356)
T 1fg7_A 238 KVIAPYPLSTPVADIAAQALS--PQ---GI-VAMRERVAQIIAEREYLI 280 (356)
T ss_dssp HHSCSSCSCHHHHHHHHHHTS--HH---HH-HHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHHHhc--Cc---cH-HHHHHHHHHHHHHHHHHH
Confidence 877766899999999999994 22 11 247778888888887764
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-29 Score=277.68 Aligned_cols=256 Identities=14% Similarity=0.174 Sum_probs=208.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++|||+.|.+++++++.+.+++.+.+.. |. ..|..++++++++++ |++. + +|++|+|+++++..++
T Consensus 22 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~-~~~~~~l~~~la~~~----~~~~--~-~v~~~~g~~~al~~~~ 93 (364)
T 1lc5_A 22 SPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYP-DADYFHLHQALARHH----QVPA--S-WILAGNGETESIFTVA 93 (364)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCC-CTTCHHHHHHHHHHH----TSCG--G-GEEEESSHHHHHHHHH
T ss_pred CccceEEeccccCCCCCCHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHH----CcCH--H-HEEECCCHHHHHHHHH
Confidence 4567999999999888889999998887643 43 346778888887776 5543 3 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
.++ +||+|+++.|+|..+...++..|++++.+|++.+++|.+ ++++.+.+++++ +++++++|+ ||||.+++.+++
T Consensus 94 ~~~--~gd~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~-l~~~~~~~~~~~-~~v~i~~p~-nptG~~~~~~~l 168 (364)
T 1lc5_A 94 SGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQL-TDAILEALTPDL-DCLFLCTPN-NPTGLLPERPLL 168 (364)
T ss_dssp HHH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCC-CTTHHHHCCTTC-CEEEEESSC-TTTCCCCCHHHH
T ss_pred HHc--CCCeEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccch-hHHHHHhccCCC-CEEEEeCCC-CCCCCCCCHHHH
Confidence 888 789999999999999999999999999999976456655 555555555555 589999997 999999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE-eCcHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV-LNHPQL 848 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv-~~~~~l 848 (903)
++|+++|+++|++||+||+|.++.+++.. .+..++.. +++++++||||.+|++|+|+||++ ++++ +
T Consensus 169 ~~i~~~~~~~~~~li~De~~~~~~~~~~~--------~~~~~~~~----~~~i~~~s~sK~~~~~G~r~G~~~~~~~~-~ 235 (364)
T 1lc5_A 169 QAIADRCKSLNINLILDEAFIDFIPHETG--------FIPALKDN----PHIWVLRSLTKFYAIPGLRLGYLVNSDDA-A 235 (364)
T ss_dssp HHHHHHHHHHTCEEEEECTTGGGSTTCCC--------SGGGCTTC----TTEEEEEESTTTTTCTTTCCEEEECCCHH-H
T ss_pred HHHHHHhhhcCcEEEEECcChhhccCccc--------hhhHhccC----CCEEEEEECchhhcCCccceEEEEECCHH-H
Confidence 99999999999999999999877765322 12212222 479999999999999999999999 7766 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++.+......++++.+.|.++..+|+ .. +++++.++.++++++.+.
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 281 (364)
T 1lc5_A 236 MARMRRQQMPWSVNALAALAGEVALQ--DS------AWQQATWHWLREEGARFY 281 (364)
T ss_dssp HHHHHHHSCTTCSCHHHHHHHHHGGG--CH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHh--Cc------HHHHHHHHHHHHHHHHHH
Confidence 99998877777889999999999994 22 567778888888777664
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-30 Score=291.66 Aligned_cols=268 Identities=13% Similarity=0.129 Sum_probs=209.4
Q ss_pred CCCeEEccCCCCCCCC---cHHHHHHH--HHHHH-------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 614 NSGLIHMDVDQSFLPI---PSLVKAAI--FESFA-------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~---p~~v~~al--~~al~-------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
.+..|+|+.|.|+... ++.+.+++ .+++. .|....|.+++|+++++++ +++ ++ +|++|+|+
T Consensus 32 ~~~~i~~~~G~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~----~~~--~~-~i~~t~G~ 104 (427)
T 3ppl_A 32 KNLKLDLTRGKPSSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL----GVP--VE-QVLAGDAS 104 (427)
T ss_dssp TCCCEECCCCSCCHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH----TSC--GG-GEEECSSC
T ss_pred CCceEecCCCCCChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh----CCC--cc-eEEEeCCc
Confidence 3468999999988543 22355544 33322 3555678899999999887 443 44 89999999
Q ss_pred HHHH--HHHHHHhcc--C----------CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCC
Q 043334 682 QSLF--NKLVLCCIL--E----------GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKK 747 (903)
Q Consensus 682 ~~al--~~ll~~l~~--p----------GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~ 747 (903)
++++ ..++.++++ | ||+|++++|+|..|...++..|++++.+|++++ + +|++.++++++..+.
T Consensus 105 ~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~~~~~v~~~~~-g--~d~~~l~~~l~~~~~ 181 (427)
T 3ppl_A 105 SLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGFEMISVPMNED-G--PDMDAVEELVKNPQV 181 (427)
T ss_dssp HHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTCEEEEEEEETT-E--ECHHHHHHHTTSTTE
T ss_pred HHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCCEEEEeCCCCC-C--CCHHHHHHHHhcCCC
Confidence 9999 578888887 6 899999999999999999999999999999753 3 899999999853332
Q ss_pred cEEEEECCC-CCCcccCCCHHHHHHHHHHH-HhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc
Q 043334 748 PWVYISGPT-INPTGLLYSNKEIENILTVC-AKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG 825 (903)
Q Consensus 748 ~~vil~~P~-~NPTG~v~s~eel~eI~~ia-~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~ 825 (903)
++| +++|+ |||||.+++.+++++|+++| +++|++||+||+|.++.|++......+....... .+. .+++++++
T Consensus 182 ~~v-~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~i~~~ 256 (427)
T 3ppl_A 182 KGM-WVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEA-AGN---PNRFWAFT 256 (427)
T ss_dssp EEE-EECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHH-TTC---TTSEEEEE
T ss_pred eEE-EECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhc-cCC---CCcEEEEe
Confidence 344 45554 59999999999999999999 9999999999999998888765322222221110 112 25899999
Q ss_pred cCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 826 GLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 826 S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
||||+ ++||+|+||++++++ +++.+..... ..+++.+.|.++..+|. +. ..+.+++.+.++.|++|++.+.
T Consensus 257 S~SK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~--~~~~~~~~~~~~~~~~~~~~l~ 329 (427)
T 3ppl_A 257 STSKI-TLAGAGVSFFLTSAE-NRKWYTGHAGIRGIGPNKVNQLAHARYFG--DA--EGVRAVMRKHAASLAPKFNKVL 329 (427)
T ss_dssp ESTTT-SCTTSSCEEEECCHH-HHHHHHHHHHHHCSCCCHHHHHHHHHHHC--SH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhc-cCcCccEEEEEcCHH-HHHHHHHHhhcccCCCCHHHHHHHHHHHh--Ch--hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999 789999999999987 9998887654 77889999999999994 31 2456888999999999988764
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=273.72 Aligned_cols=255 Identities=15% Similarity=0.193 Sum_probs=211.3
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHc-------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFAR-------QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~-------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.|||+.|++++++++.+.+++.+.+.+ |....+ .++++++++++++.+|...+++ +|++|+|+++++..++
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~~G~~~al~~~~ 109 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITKQTGVAVTRD-NLWAANGSNEILQQLL 109 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEESHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhhcccCCCChH-hEEECCChHHHHHHHH
Confidence 499999999999999999999887753 333334 6899999999999888876666 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
.+++++||.|++++|+|+.+...++..|++++.+|.+ ++|.+|++++++.+++ ++ ++|++++|+ ||||.+++.++
T Consensus 110 ~~l~~~gd~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~~~~ 185 (369)
T 3cq5_A 110 QAFGGPGRTALGFQPSYSMHPILAKGTHTEFIAVSRG--ADFRIDMDVALEEIRAKQP-DIVFVTTPN-NPTGDVTSLDD 185 (369)
T ss_dssp HHHCSTTCEEEEEESSCTHHHHHHHHTTCEEEEEECC--TTSSCCHHHHHHHHHHHCC-SEEEEESSC-TTTCCCCCHHH
T ss_pred HHhcCCCCEEEEcCCChHHHHHHHHHcCCEEEEecCC--cCCCCCHHHHHHHhhccCC-CEEEEeCCC-CCCCCCCCHHH
Confidence 9999999999999999999999999999999999975 4577999999999886 55 589999998 99999999777
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC-ceEEEccCchhcccccceeeEEEeCcHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF-NVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~-~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
+.+|++.| +++||+||+|+.+.++ . +.....+.. + ++++++||||.+|++|+|+||++++++
T Consensus 186 l~~l~~~~---~~~li~De~~~~~~~~--~-------~~~~~~~~~----~~~~i~~~s~sK~~~~~G~r~G~~~~~~~- 248 (369)
T 3cq5_A 186 VERIINVA---PGIVIVDEAYAEFSPS--P-------SATTLLEKY----PTKLVVSRTMSKAFDFAGGRLGYFVANPA- 248 (369)
T ss_dssp HHHHHHHC---SSEEEEECTTGGGCCS--C-------CGGGGTTTC----TTTEEEEEESSSTTSCGGGCCEEEEECTH-
T ss_pred HHHHHHhC---CCEEEEECCchhhcCC--c-------chHHHHhhC----CCCEEEEEechHhcCCcccceEEEEeCHH-
Confidence 77776654 5999999999876543 1 112222222 3 789999999999999999999999987
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+......++++.+.|.++..+|+ +. +++++.++.++++++.+.
T Consensus 249 ~~~~l~~~~~~~~~~~~~~~a~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 295 (369)
T 3cq5_A 249 FIDAVMLVRLPYHLSALSQAAAIVALR--HS------ADTLGTVEKLSVERVRVA 295 (369)
T ss_dssp HHHHHHTTSCTTCSCHHHHHHHHHHHH--TH------HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 999998877777799999999999994 22 456677777777777654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=273.38 Aligned_cols=254 Identities=13% Similarity=0.176 Sum_probs=207.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.++++|||+.|.|++++|+.+.+++.+.+... .+..+..++++++++++ |++. + +|++|+|+++++..++.
T Consensus 24 ~~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~l~~~la~~~----~~~~--~-~i~~~~g~t~al~~~~~ 96 (361)
T 3ftb_A 24 KGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYL----KLKD--I-GIVLGNGASEIIELSIS 96 (361)
T ss_dssp ----CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCTTCHHHHHHHHHHH----TCCS--C-EEEEESSHHHHHHHHHT
T ss_pred CCCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHh----CCCc--c-eEEEcCCHHHHHHHHHH
Confidence 56789999999999999999999998887652 23456677777777765 5543 3 89999999999999888
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++ |+|+++.|+|..+...++..|++++.++++.+++ ++++++++++++ + +++++++|+ ||||.+++.++++
T Consensus 97 ~~----d~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~l~~~l~~-~-~~v~i~~p~-nptG~~~~~~~l~ 167 (361)
T 3ftb_A 97 LF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMC--IDYEDIISKIDD-V-DSVIIGNPN-NPNGGLINKEKFI 167 (361)
T ss_dssp TC----SEEEEEESCCTHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHTTT-C-SEEEEETTB-TTTTBCCCHHHHH
T ss_pred Hc----CcEEEecCChHHHHHHHHHcCCeEEEeecCcccC--CCHHHHHHhccC-C-CEEEEeCCC-CCCCCCCCHHHHH
Confidence 77 8999999999999999999999999999986545 566999999987 5 599999997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE-eCcHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV-LNHPQLV 849 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv-~~~~~li 849 (903)
+|+++|+++|+++|+||+|.++.++ ...+ ........ +++++++|+||.+|++|+|+||++ ++++ ++
T Consensus 168 ~i~~~~~~~~~~li~De~~~~~~~~-~~~~------~~~~~~~~----~~~i~~~s~sK~~~~~G~r~g~~~~~~~~-~~ 235 (361)
T 3ftb_A 168 HVLKLAEEKKKTIIIDEAFIEFTGD-PSSS------FVGEIKNY----SCLFIIRAMTKFFAMPGIRFGYGITNNKE-IA 235 (361)
T ss_dssp HHHHHHHHHTCEEEEECSSGGGTCC-TTSS------SGGGTTTC----SSEEEEEESSSTTSCGGGCCEEEEESCHH-HH
T ss_pred HHHHHhhhcCCEEEEECcchhhcCC-cccc------hhHhcccC----CCEEEEeeChhhcCCCCcceeEEEeCCHH-HH
Confidence 9999999999999999999888776 3221 12222222 479999999999999999999999 5555 99
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 850 DAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 850 ~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+......++++.+.|.++..+|+ + .+++++.++.++++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~l~--~------~~~~~~~~~~~~~~~~~l~ 280 (361)
T 3ftb_A 236 AKIKAKQNPWNINCFAEMAAINCLK--D------TNYIEESLLWIKKERKRFI 280 (361)
T ss_dssp HHHHTTSCTTCSCHHHHHHHHHTSS--C------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHhc--C------HHHHHHHHHHHHHHHHHHH
Confidence 9999888788899999999999994 2 2567777777777777664
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=296.83 Aligned_cols=269 Identities=10% Similarity=0.115 Sum_probs=212.1
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHc--cC-CCCCchHHHHHHHHHHHhh-cC-CCCCCCCcEEecCchHHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFAR--QN-MSESEIDVTPSIQQYIKSN-FG-FPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~--y~-~~~G~~~lr~ala~~l~~~-~G-~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
++|+|+.|.++++ ++.+++++.+.+.. |. +..|.+++++++++++++. .+ ++..+.++|++|+|+++++..++.
T Consensus 104 ~~i~l~~g~~~~~-~~~~v~a~~~~~~~~~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~ 182 (533)
T 3f6t_A 104 DAVNYCHTELGLN-RDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFH 182 (533)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHHHTCSCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHH
T ss_pred hheeccCCCCCcC-CcHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHH
Confidence 4789999999986 45555555555533 43 5678999999999999776 34 555533389999999999999998
Q ss_pred H-----hccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC--CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 691 C-----CILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES--EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~-----l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~--~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+ ++++||+|+++.|+|.++...++..|++++.++++. +++|.+|++.|++++++++ ++|++++|+ ||||.+
T Consensus 183 ~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~-k~v~l~~p~-NPtG~~ 260 (533)
T 3f6t_A 183 SLAENHLLKKGDKIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDPSI-KALIVVNPT-NPTSKE 260 (533)
T ss_dssp HHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCTTE-EEEEEESSC-TTTCBC
T ss_pred HhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCCCC-eEEEEeCCC-CCCccc
Confidence 8 789999999999999999999999999999999875 5678999999999998766 589999998 999999
Q ss_pred CCHHHHHHHHHHHH-hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 764 YSNKEIENILTVCA-KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 764 ~s~eel~eI~~ia~-k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
++.+++++|+++|+ ++|++||+||+|.++.++... ... ... +++++++||||.+|++|+|+||++
T Consensus 261 ~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~--------~~~-~~~-----~~~i~~~S~SK~~g~~G~RiG~l~ 326 (533)
T 3f6t_A 261 FDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKS--------IYS-VVP-----YNTMLVYSYSKLFGCTGWRLGVIA 326 (533)
T ss_dssp CCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCC--------HHH-HSG-----GGEEEEEESHHHHTCGGGCEEEEE
T ss_pred cCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccC--------Hhh-cCC-----CCEEEEecCcccCCCcccceEEEE
Confidence 99999999999999 689999999999877764322 222 111 489999999999999999999999
Q ss_pred eCcHHHHHHH------------------------------------HhCCC--CCCCcHHHHHH----HHHHHhcccccc
Q 043334 843 LNHPQLVDAF------------------------------------SSFPG--LSKPHSTVRYA----IKKLLGLRERKA 880 (903)
Q Consensus 843 ~~~~~li~~l------------------------------------~~~~~--~~~~s~~~Q~a----a~~~L~~~~~~~ 880 (903)
++++++++.+ ..... ..+++.+.|.+ +..+|....| .
T Consensus 327 ~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g-~ 405 (533)
T 3f6t_A 327 LNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTN-G 405 (533)
T ss_dssp EESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBG-G
T ss_pred ECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhcc-c
Confidence 9875344433 22322 56788899988 4455520000 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 043334 881 RDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 881 ~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+..+.+++++++.|++|++.++
T Consensus 406 ~~~~~~~~~~~~~~~~r~~~l~ 427 (533)
T 3f6t_A 406 GSDDPYIDIARKLVSERYDQLH 427 (533)
T ss_dssp GTBCHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 1124788999999999999875
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=289.05 Aligned_cols=282 Identities=9% Similarity=0.035 Sum_probs=216.0
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCeEEccCCCCC---CCCcHHHHHHHH--HHH------Hcc-CCCCCchHHHHHHHHHH
Q 043334 594 FSRSAISVLNSAELSITETPNSGLIHMDVDQSF---LPIPSLVKAAIF--ESF------ARQ-NMSESEIDVTPSIQQYI 661 (903)
Q Consensus 594 l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~---~~~p~~v~~al~--~al------~~y-~~~~G~~~lr~ala~~l 661 (903)
++.+.++++..... ....|||+.|.|+ ++.|+.+.+++. +.+ ..| ....|.+++|+++++++
T Consensus 10 ~~~~~~~~~~~~~~------~~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~ 83 (423)
T 3ez1_A 10 ALDLARQAYEAFKA------RGLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL 83 (423)
T ss_dssp HHHHHHHHHHHHHH------HTCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc------CCceEecCCCCCChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh
Confidence 33445555554322 2468999999999 777777877764 322 236 56678889999888876
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHH--HHHHHhcc--C---------CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFN--KLVLCCIL--E---------GGTLCFPAGSNGNYVSAARFLKANIVNIPTESE 728 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~--~ll~~l~~--p---------GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~ 728 (903)
+++ ++ +|++|+|+++++. .++.++++ | ||+|+++.|+|..+...++..|++++.+|++.+
T Consensus 84 ----~~~--~~-~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~ 156 (423)
T 3ez1_A 84 ----DVK--AE-NVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGFELLTVDMQSD 156 (423)
T ss_dssp ----TSC--GG-GEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTCEEEEEEEETT
T ss_pred ----CCC--hh-hEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCCEEEeccCCCC
Confidence 444 44 8999999999997 88888888 8 599999999999999999999999999999753
Q ss_pred CCcccCHHHHHHHhh--cCCCcEEEEE-CCCCCCcccCCCHHHHHHHHHHH-HhCCcEEEEecCCCCCccCC-CCCCCCc
Q 043334 729 VGFKMTEKTLVTILE--TVKKPWVYIS-GPTINPTGLLYSNKEIENILTVC-AKYGARVVIDTAFSGLEFNY-EGWGGWD 803 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~--~~~~~~vil~-~P~~NPTG~v~s~eel~eI~~ia-~k~~i~VI~DeaY~~l~f~~-~~~s~~s 803 (903)
.+|+++|+++++ +++ ++|+++ +|+ ||||.+++.+++++|+++| +++|++||+||+|..+.|.+ ......+
T Consensus 157 ---g~d~~~l~~~l~~~~~~-~~v~~~~~~~-NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~ 231 (423)
T 3ez1_A 157 ---GPDVDAVERLAGTDPSV-KGILFVPTYS-NPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVN 231 (423)
T ss_dssp ---EECHHHHHHHHHSCTTE-EEEEECSSSC-TTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCC
T ss_pred ---CCCHHHHHHHHhhCCCc-eEEEECCCCC-CCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcc
Confidence 389999999995 333 355433 555 9999999999999999999 99999999999999777765 2211122
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccch
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKAR 881 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~ 881 (903)
........ +. .+++++++||||. +++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. + ...
T Consensus 232 ~~~~~~~~-~~---~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~-~~~ 302 (423)
T 3ez1_A 232 FVVLARDA-GY---PDRAFVFASTSKI-TFAGAGLGFVASSED-NIRWLSKYLGAQSIGPNKVEQARHVKFLT--E-YPG 302 (423)
T ss_dssp HHHHHHHH-TC---TTSEEEEEESTTT-SCSSSSCEEEEECHH-HHHHHHHHHHHSCSCCCHHHHHHHHHHHH--H-STT
T ss_pred hhhhhhcc-CC---CCeEEEEeCchhh-ccCCcceEEEEeCHH-HHHHHHHHHhhhccCCCHHHHHHHHHHHH--h-ccc
Confidence 22211111 12 2589999999998 689999999999987 9999887653 67889999999999995 2 012
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 043334 882 DLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 882 ~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+++++.++.|++|++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~ 323 (423)
T 3ez1_A 303 GLEGLMRDHAAIIAPKFRAVD 323 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999988887764
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-31 Score=302.31 Aligned_cols=269 Identities=13% Similarity=0.133 Sum_probs=220.8
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
++|+|+.|++++++++.+.+++.+.+... .+..+..++++++++++++.+|.+.+++ +|++|+|+++++..++.+++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~-~v~~~~g~~~a~~~~~~~~~ 110 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQLVYGYTYASDELLQAVLDWEKSEHQYSFDKE-DIVFVEGVVPAISIAIQAFT 110 (392)
Confidence 79999999999999999999988877431 2222367899999999998889766666 89999999999999999999
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC-CcccCHHHHHHHhh-cCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV-GFKMTEKTLVTILE-TVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~-~f~ld~~~L~~~l~-~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
++||+|+++.|+|..+...++..|++++.+++++++ +|.+|++.+++.++ .++ +++++++|+ ||||.+++.+++++
T Consensus 111 ~~gd~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~~~~~~l~~ 188 (392)
T 3b1d_A 111 KEGEAVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVENDV-KLYLLCNPH-NPGGRVWEREVLEQ 188 (392)
Confidence 999999999999999999999999999999986433 58899999999887 444 588889997 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|+++|+++|++||+||+|.++.|++... .+ +..+.... .+++++++||||.+|++|+|+||++++++++++.
T Consensus 189 l~~~~~~~~~~li~De~~~~~~~~g~~~--~~----~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~ 260 (392)
T 3b1d_A 189 IGHLCQKHHVILVSDEIHQDLTLFGHEH--VS----FNTVSPDF--KDFALVLSSATKTFNIAGTKNSYAIIENPTLCAQ 260 (392)
Confidence 9999999999999999999988876432 11 11121100 1479999999999999999999999986558888
Q ss_pred HHhCCCC---CCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FSSFPGL---SKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~~~~~~---~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+...... .+++.+.|.++..+|. ++ .++++++++.++++++.+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 261 FKHQQLVNNHHEVSSLGYIATETAYR--YG-----KPWLVALKAVLEENIQFAV 307 (392)
Confidence 8876652 3568889999999884 22 2567778888888877664
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=276.55 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=200.1
Q ss_pred CCCCeEEccCCCCCCCCc--HHHHHHHHHHHH---------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 613 PNSGLIHMDVDQSFLPIP--SLVKAAIFESFA---------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p--~~v~~al~~al~---------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
.++++|+|+.|.|+..++ +.+.+++.+.+. .|....|.+++|+++++++.+.+|+..+++ +|++|+|+
T Consensus 29 ~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t~G~ 107 (417)
T 3g7q_A 29 RTPGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQ-NIALTNGS 107 (417)
T ss_dssp ---CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGG-GEEEESCH
T ss_pred cCCCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcc-cEEEeCCc
Confidence 457899999999987543 456666665542 466778999999999999999999888877 99999999
Q ss_pred HHHHHHHHHHhccCCC-----eEEEc-CCCcHHHHHHHHH------cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcE
Q 043334 682 QSLFNKLVLCCILEGG-----TLCFP-AGSNGNYVSAARF------LKANIVNIPTESEVGFKMTEKTLVTILETVKKPW 749 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD-----~Vlv~-~P~y~~~~~~~~~------~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~ 749 (903)
++++..++.+++++|| .|+++ .|+|+.|...+.. .+..+..++.+. .+|.+|+++++ +++++ ++
T Consensus 108 t~al~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~l~--~~~~~-~~ 183 (417)
T 3g7q_A 108 QSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQ-FKYHVDFEHLH--IGEET-GM 183 (417)
T ss_dssp HHHHHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGE-EEEECCGGGCC--CCTTE-EE
T ss_pred HHHHHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcc-cccccCHHHhc--cccCc-eE
Confidence 9999999999999988 89997 9999999877643 234555555321 25678988887 55555 58
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+++++|+ ||||.+++.+++++|+++|+++|++||+||+|+... .+... ... .... .+++++++||||
T Consensus 184 v~~~~p~-NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~-~~~~~--~~~------~~~~---~~~~i~~~s~sK 250 (417)
T 3g7q_A 184 ICVSRPT-NPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPF-PGIIF--SEA------RPLW---NPNIILCMSLSK 250 (417)
T ss_dssp EEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBC--SCC------CCCC---CTTEEEEEESGG
T ss_pred EEECCCC-CCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCcccc-ccccc--ccc------ccCC---CCCEEEEEechh
Confidence 9999998 999999999999999999999999999999997522 11110 000 0111 258999999999
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHH-HHHHHHHHHHHHh
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAE-HIRNLESRSKRLK 902 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~-~r~~y~~Rr~~l~ 902 (903)
++++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. ++ .+.++..+ +++.|++|++.+.
T Consensus 251 -~~~~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~~~~~~~~~~~~~~~~~~~ 319 (417)
T 3g7q_A 251 -LGLPGSRCGIIIANDK-TITAIANMNGIISLAPGGMGPAMMCEMIK--RN---DLLRLSETVIKPFYYQRVQQTI 319 (417)
T ss_dssp -GTCTTSCCEEEECCHH-HHHHHHHHHHHHCCCCCSHHHHHHHHHHH--TT---CHHHHHHHTHHHHHHHHHHHHH
T ss_pred -ccCCCcceEEEEeCHH-HHHHHHHhhcceeeCCCcHHHHHHHHHHc--Cc---chHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999887 9998887654 66788999999999994 33 23445544 7777888877654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=270.72 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=193.4
Q ss_pred ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEE
Q 043334 643 RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVN 722 (903)
Q Consensus 643 ~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~ 722 (903)
.|.+..|.+++++++++++. ++ +++ +|++|+|+++++..++.+++++||+|+++.|+|..+...++..|++++.
T Consensus 58 ~y~~~~g~~~l~~~la~~~~---~~--~~~-~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~ 131 (375)
T 3op7_A 58 NYGWIEGSPAFKKSVSQLYT---GV--KPE-QILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDL 131 (375)
T ss_dssp SSCCTTCCHHHHHHHHTTSS---SC--CGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTHHHHHHHHTTCEEEE
T ss_pred CCCCCCChHHHHHHHHHHhc---cC--Chh-hEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHcCCEEEE
Confidence 36666778888888887652 33 334 8999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCC
Q 043334 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGW 802 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~ 802 (903)
++++.+++|.+|++++++++++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+.+.+++..
T Consensus 132 v~~~~~~~~~~d~~~l~~~l~~~~-~~v~~~~~~-nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~---- 205 (375)
T 3op7_A 132 WQIEEENGWLPDLEKLRQLIRPTT-KMICINNAN-NPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVP---- 205 (375)
T ss_dssp EEEEGGGTTEECHHHHHHHCCTTC-CEEEEESSC-TTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCC----
T ss_pred EeccccCCCCCCHHHHHHhhccCC-eEEEEcCCC-CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCC----
Confidence 999876789999999999998766 589999997 99999999999999999999999999999999987776221
Q ss_pred chhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccc
Q 043334 803 DLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKA 880 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~ 880 (903)
.... . . +++++++||||.+|++|+|+||++++++ +++.+..... ..+++.+.|.++..+|. .
T Consensus 206 ---~~~~-~--~----~~~i~~~s~sK~~~~~G~r~G~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~--- 269 (375)
T 3op7_A 206 ---SIIE-V--Y----DKGIAVNSLSKTYSLPGIRIGWVAANHQ-VTDILRDYRDYTMICAGVFDDLVAQLALA--H--- 269 (375)
T ss_dssp ---CHHH-H--C----TTEEEEEESSSSSSCGGGCCEEEECCHH-HHHHHTTTGGGTTSCCCHHHHHHHHHHHH--T---
T ss_pred ---chhh-h--c----CCEEEEeEChhhcCCcccceEEEEeCHH-HHHHHHHHHhhhccCCCcHHHHHHHHHHh--c---
Confidence 1121 1 1 4789999999999999999999999766 9999987664 56678899999988884 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 043334 881 RDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 881 ~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.++++.++.++++++.+.
T Consensus 270 --~~~~~~~~~~~~~~~~~~l~ 289 (375)
T 3op7_A 270 --YQEILERNRHILEENLAILD 289 (375)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHHH
Confidence 24677778888888777664
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=261.46 Aligned_cols=227 Identities=15% Similarity=0.165 Sum_probs=185.0
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc--CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ--NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
...+.|+|+.+++++++++.+.+++.+..... .+..|..++|+++++++ |++.+ +|++|+|+++++..++.
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~----~~~~~---~i~~t~G~~~~l~~~~~ 86 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLAEHF----SCPED---NLMLVRGIDECFDRISA 86 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCCTTHHHHHHHHHHHHH----TSCGG---GEEEESHHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCCCCchHHHHHHHHHHh----CcCHH---HEEEeCCHHHHHHHHHH
Confidence 55679999999999999999999998876542 13345666666666654 65443 89999999999999988
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++ +||+|+++.|+|..+...++..|++++.++++. +|.+|++++++. .++ +++++++|+ ||||.+++.+++.
T Consensus 87 ~~--~gd~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~--~~~-~~v~i~~p~-nptG~~~~~~~l~ 158 (337)
T 3p1t_A 87 EF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGLTD--DLLLDPNDLAQV--SRD-DCVVLANPS-NPTGQALSAGELD 158 (337)
T ss_dssp HS--TTSEEEEESSSCSHHHHHHTTSCCEEEEECBCT--TSSBCHHHHTTC--CTT-EEEEEESSC-TTTCCCCCHHHHH
T ss_pred hc--CCCeEEEeCCCcHHHHHHHHHcCCEEEEecCCC--CCCCCHHHHHhh--cCC-CEEEEeCCC-CCCCCCCCHHHHH
Confidence 87 999999999999999999999999999999864 577999999876 234 599999998 9999999977666
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+| |+++++ +|+||+|.++.+.+... . .. .+++++++||||.+|++|+|+||++++++ +++
T Consensus 159 ~l---~~~~~~-~ivDea~~~~~~~~~~~--------~----~~---~~~~i~~~S~sK~~g~~G~r~G~~~~~~~-~~~ 218 (337)
T 3p1t_A 159 QL---RQRAGK-LLIDETYVDYSSFRARG--------L----AY---GENELVFRSFSKSYGLAGLRLGALFGPSE-LIA 218 (337)
T ss_dssp HH---HHHCSE-EEEECTTGGGSSCSSSC--------C----CC---BTTEEEEEESSSTTCCTTTCCEEEECCHH-HHH
T ss_pred HH---HHhCCc-EEEECCChhhccccccc--------c----cc---CCCEEEEeeCchhccCcchheEEEEeCHH-HHH
Confidence 55 566776 55699997655433210 0 11 14799999999999999999999999987 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~ 874 (903)
.+.+.....+++.+.|.++..+|+
T Consensus 219 ~l~~~~~~~~~~~~~~~a~~~~l~ 242 (337)
T 3p1t_A 219 AMKRKQWFCNVGTLDLHALEAALD 242 (337)
T ss_dssp HHHTTSCTTCSCHHHHHHHHHHHT
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhC
Confidence 998887788889999999999994
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-28 Score=278.73 Aligned_cols=267 Identities=13% Similarity=0.108 Sum_probs=208.7
Q ss_pred CCCeE-EccCCCCCCCCc--HHHHHHHHHHHHc----------------cCCCCCchHHHHHHHHHHHhhcCCCCCCCCc
Q 043334 614 NSGLI-HMDVDQSFLPIP--SLVKAAIFESFAR----------------QNMSESEIDVTPSIQQYIKSNFGFPIDINAE 674 (903)
Q Consensus 614 ~~~~I-dLs~g~p~~~~p--~~v~~al~~al~~----------------y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~ 674 (903)
.+++| +|+.|.|+.+++ +.+.+++.+.+.. |....|.+++|+++++++.+.+|+..+++ +
T Consensus 30 ~~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~ 108 (444)
T 3if2_A 30 SDQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-N 108 (444)
T ss_dssp SSSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-G
T ss_pred CchhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-H
Confidence 36899 999999987533 4455666554433 55567889999999999999999888877 9
Q ss_pred EEecCchHHHHHHHHHHhccCCC--------------eEEEc-CCCcHHHHHH------HHHcCCEEEEecCCCCC---C
Q 043334 675 FIYADCSQSLFNKLVLCCILEGG--------------TLCFP-AGSNGNYVSA------ARFLKANIVNIPTESEV---G 730 (903)
Q Consensus 675 I~vt~Gs~~al~~ll~~l~~pGD--------------~Vlv~-~P~y~~~~~~------~~~~G~~vv~v~~~~~~---~ 730 (903)
|++|+|+++++..++.+++++|| .|+++ .|+|+.|... +...|.+++.++++.++ +
T Consensus 109 i~~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 188 (444)
T 3if2_A 109 IALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFK 188 (444)
T ss_dssp EEEESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEEEEE
T ss_pred EEEecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccCccc
Confidence 99999999999999999999998 78876 9999998873 35568889999887532 3
Q ss_pred cccCHHHHHHH---hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 731 FKMTEKTLVTI---LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 731 f~ld~~~L~~~---l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
|.+|+++|+++ +++++ ++|++++|+ ||||.+++.+++++|+++|+++|++||+||+|+... .+... ...
T Consensus 189 ~~~d~~~l~~~l~~~~~~~-~~v~i~~p~-nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~~--~~~--- 260 (444)
T 3if2_A 189 YRVDFEALENLPALKEGRI-GAICCSRPT-NPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPF-PNIIY--SDA--- 260 (444)
T ss_dssp EECCHHHHHTCHHHHTTCE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBC--SCC---
T ss_pred cCCCHHHHHHHHHhcCCCc-eEEEeCCCC-CCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcc-ccccc--ccc---
Confidence 78999999988 55555 589999997 999999999999999999999999999999997421 11110 000
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMN 885 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~ 885 (903)
.... .+++++++||||. +++|+|+||++++++ +++.+..... ..+++.+.|.++..++. .+ .+..
T Consensus 261 ---~~~~---~~~~i~~~S~sK~-~~~G~r~G~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~---~~~~ 327 (444)
T 3if2_A 261 ---HLNW---DNNTILCFSLSKI-GLPGMRTGIIVADAK-VIEAVSAMNAVVNLAPTRFGAAIATPLVA--ND---RIKQ 327 (444)
T ss_dssp ---CCCC---CTTEEEEEESTTT-TCGGGCCEEEECCHH-HHHHHHHHHHHHHSSCCCHHHHHHHHHHH--TS---HHHH
T ss_pred ---cccC---CCCEEEEechhhc-cCCCCceEEEEECHH-HHHHHHHHHHhccCCCChHHHHHHHHHHH--cC---chhH
Confidence 0111 2589999999996 889999999999887 9888887654 56778899999999994 33 2334
Q ss_pred HHHH-HHHHHHHHHHHHh
Q 043334 886 AVAE-HIRNLESRSKRLK 902 (903)
Q Consensus 886 ~l~~-~r~~y~~Rr~~l~ 902 (903)
+..+ +++.|++|++.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~ 345 (444)
T 3if2_A 328 LSDNEIKPFYQKQATLAV 345 (444)
T ss_dssp HHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4444 6777888777653
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=261.23 Aligned_cols=249 Identities=15% Similarity=0.204 Sum_probs=198.3
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc------CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ------NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y------~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+.++|+|+.|+|++++++.+.+++.+.+.+. .+..+..++++++++++ |++ ++ +|++|+|+++++.
T Consensus 24 ~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~----g~~--~~-~i~~t~g~~~al~ 96 (360)
T 3hdo_A 24 DIASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSASSQKLREVAGELY----GFD--PS-WIIMANGSDEVLN 96 (360)
T ss_dssp CCTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHH----TCC--GG-GEEEESSHHHHHH
T ss_pred cccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCCchHHHHHHHHHHh----CcC--cc-eEEEcCCHHHHHH
Confidence 45689999999999999999999999987652 12234566777776665 544 34 8999999999999
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCH
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ 766 (903)
.++.+++++||+|+++.|+|..+...++..|++++.++++. +|.+ +++.+.+ ++ +++++++|+ ||||.+++.
T Consensus 97 ~~~~~l~~~gd~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~--~~~~--~~l~~~~--~~-~~v~i~~p~-nptG~~~~~ 168 (360)
T 3hdo_A 97 NLIRAFAAEGEEIGYVHPSYSYYGTLAEVQGARVRTFGLTG--DFRI--AGFPERY--EG-KVFFLTTPN-APLGPSFPL 168 (360)
T ss_dssp HHHHHHCCTTCEEEEESSSCTHHHHHHHHHTCEEEEECBCT--TSSB--TTCCSSB--CS-SEEEEESSC-TTTCCCCCH
T ss_pred HHHHHHhCCCCEEEEcCCChHHHHHHHHHCCCEEEEeeCCC--CCCH--HHHHhhc--CC-CEEEEeCCC-CCCCCCcCH
Confidence 99999999999999999999999999999999999999964 4555 4443322 23 599999997 999999996
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
++ |.++|+++|++||+||+|+++ .+... . +.. +.. +++++++||||.+|++|+|+||++++++
T Consensus 169 ~~---l~~l~~~~~~~li~De~~~~~--~~~~~--~---~~~---~~~----~~~i~~~s~sK~~g~~G~r~G~~~~~~~ 231 (360)
T 3hdo_A 169 EY---IDELARRCAGMLVLDETYAEF--AESNA--L---ELV---RRH----ENVVVTRTLSKSYSLAGMRIGLAIARPE 231 (360)
T ss_dssp HH---HHHHHHHBSSEEEEECTTGGG--SSCCC--T---HHH---HHC----SSEEEEEESTTTTSCTTSCCEEEECCHH
T ss_pred HH---HHHHHHHCCCEEEEECChHhh--CCcch--h---HHh---ccC----CCEEEEecchHhhcCCccceeeEeeCHH
Confidence 65 555567889999999999764 33321 1 111 222 4799999999999999999999999876
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 847 QLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 847 ~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++.+......++++.+.|.++..+|+ +. +++++.++.++++++.+.
T Consensus 232 -~~~~~~~~~~~~~~~~~~~~a~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 278 (360)
T 3hdo_A 232 -VIAALDKIRDHYNLDRLAQAACVAALR--DQ------AYLSECCRRIRETREWFT 278 (360)
T ss_dssp -HHHHHHHHSCSCCSCHHHHHHHHHHHH--CH------HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCCCCCCHHHHHHHHHHhc--CH------HHHHHHHHHHHHHHHHHH
Confidence 999999887778899999999999995 22 467777777777777664
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-27 Score=259.88 Aligned_cols=225 Identities=13% Similarity=0.162 Sum_probs=184.2
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.+.++|||+.|+|++++++.+.+++.+.+.. |....+ .++|++++++ +|++.+ +|++|+|+++++..++
T Consensus 13 ~g~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~~-~~lr~~la~~----~~~~~~---~i~~t~g~~~al~~~~ 84 (350)
T 3fkd_A 13 LSSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDA-GTLRQMLAKR----NSVDNN---AILVTNGPTAAFYQIA 84 (350)
T ss_dssp ---CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTTC-HHHHHHHHHH----TTCCGG---GEEEESHHHHHHHHHH
T ss_pred ccccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCcH-HHHHHHHHHH----hCcCHH---HEEEcCCHHHHHHHHH
Confidence 4578999999999999999999999887643 333333 5566665554 565433 8999999999999999
Q ss_pred HHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecC-CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 690 LCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPT-ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~-~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
.+++ ||+|+++.|+|..+...++..|++++.+++ ++++++.+ +++ ++|++++|+ ||||.+++.++
T Consensus 85 ~~l~--gd~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~----------~~~-~~v~i~~p~-nptG~~~~~~~ 150 (350)
T 3fkd_A 85 QAFR--GSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF----------SNM-DFCWLCNPN-NPDGRLLQRTE 150 (350)
T ss_dssp HHTT--TCEEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC----------TTC-SEEEEESSC-TTTCCCCCHHH
T ss_pred HHHC--CCEEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc----------CCC-CEEEEeCCC-CCcCCCCCHHH
Confidence 9887 999999999999999999999999999999 65445433 345 589999998 99999999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 769 IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 769 l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
+.+|++.|+++ +||+||+|.++.+++... ...++.. +++++++||||.+|++|+|+||++++++ +
T Consensus 151 l~~l~~~~~~~--~li~Dea~~~~~~~~~~~--------~~~~~~~----~~~i~~~S~sK~~~~~G~r~G~~~~~~~-~ 215 (350)
T 3fkd_A 151 ILRLLNDHPDT--TFVLDQSYVSFTTEEVIR--------PADIKGR----KNLVMVYSFSHAYGIPGLRIGYIVANKD-F 215 (350)
T ss_dssp HHHHHHHCTTS--EEEEECTTTTSCSSCCCC--------GGGGTTC----SSEEEEEESHHHHSCGGGCCEEEECCHH-H
T ss_pred HHHHHHhCCCC--EEEEECchhhhccCcchh--------hHHhhcC----CCEEEEecCchhccCcchheEeEEeCHH-H
Confidence 99999988765 999999999887766542 1222222 5899999999999999999999999776 9
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHh
Q 043334 849 VDAFSSFPGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 849 i~~l~~~~~~~~~s~~~Q~aa~~~L~ 874 (903)
++.+.......+++.+.|.++..+|.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (350)
T 3fkd_A 216 MKRVAAFSTPWAVNALAIEAAKFILI 241 (350)
T ss_dssp HHHHHTTCCTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 99999988888899999999999995
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=279.06 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=195.3
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHH--------HccCCCCCc-----hHHHHHHHHHHHhhcCCCCCCCCcEEec
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESF--------ARQNMSESE-----IDVTPSIQQYIKSNFGFPIDINAEFIYA 678 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al--------~~y~~~~G~-----~~lr~ala~~l~~~~G~~~~pe~~I~vt 678 (903)
..++++|+|+.|.|++++|+.+.+++.+.. ..|....|. +++|+++++++. .+|++..++++|++|
T Consensus 19 ~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t 97 (391)
T 3bwn_A 19 PMSDFVVNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVG 97 (391)
T ss_dssp CTTTSCEECSSCCCGGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEE
T ss_pred cCCCCeeEcCCCCCCCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEe
Confidence 356789999999999887777776652221 235667788 999999999998 578887764589999
Q ss_pred CchHHHHHHHHHHhccCCC----eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC
Q 043334 679 DCSQSLFNKLVLCCILEGG----TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISG 754 (903)
Q Consensus 679 ~Gs~~al~~ll~~l~~pGD----~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~ 754 (903)
+|+++++..++.+++++|| +|++++|+|+.|...++..|++++.++++. +++. .+++ ++|++++
T Consensus 98 ~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~d~-~~l~----------~~~~-k~v~l~~ 165 (391)
T 3bwn_A 98 TGSTQLCQAAVHALSSLARSQPVSVVAAAPFYSTYVEETTYVRSGMYKWEGDA-WGFD----------KKGP-YIELVTS 165 (391)
T ss_dssp EHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCTHHHHHHHTTCBTTEEEEEES-TTCC----------CCSC-EEEEEES
T ss_pred CChHHHHHHHHHHhcCCCCCCcceEEEcCCCchhHHHHHHHcCCeEEEecCCH-HHcC----------CCCC-EEEEECC
Confidence 9999999999999999999 999999999999999999999999998865 3432 1344 5888999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|| ||||.+++ +|++.+.+++++||+||+|.. + ..+ + +.. . .+++|+++||||+||++
T Consensus 166 p~-NPtG~~~~-----~l~~~~~~~~~~ii~De~y~~----~-~~~--~----l~~---~---~~~~i~~~S~SK~~g~~ 222 (391)
T 3bwn_A 166 PN-NPDGTIRE-----TVVNRPDDDEAKVIHDFAYYW----P-HYT--P----ITR---R---QDHDIMLFTFSKITGHA 222 (391)
T ss_dssp SC-TTTCCCCC-----CCC-----CCCEEEEECTTCS----T-TTS--C----CCC---C---BCCSEEEEEHHHHHSCG
T ss_pred CC-CCCchhHH-----HHHHHhhcCCCEEEEeCCCCC----C-CCC--c----ccc---C---CCCeEEEEechhhcCCC
Confidence 98 99999997 354422223399999999962 2 111 1 111 1 15899999999999999
Q ss_pred cceeeEEEe-CcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccc-----hhHHHHHHHHHHHHHHHHHHHh
Q 043334 835 ALKFGFLVL-NHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKA-----RDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 835 GlRiG~lv~-~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~-----~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+|+||+++ +++ +++.+..... .++++.+.|.++..+|. ++.. +.++++++++++.|++|++.+.
T Consensus 223 GlRiG~~~~~~~~-l~~~l~~~~~~~~~~~~~~~q~a~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 295 (391)
T 3bwn_A 223 GSRIGWALVKDKE-VAKKMVEYIIVNSIGVSKESQVRTAKILN--VLKETCKSESESENFFKYGREMMKNRWEKLR 295 (391)
T ss_dssp GGCEEEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHH--HHHHHTTCCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCHH-HHHHHHHHhcccccCCCHHHHHHHHHHHh--CcchhccccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 555 9999888765 57889999999999994 2200 0013678899999999999875
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=261.98 Aligned_cols=244 Identities=18% Similarity=0.313 Sum_probs=195.7
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.+.|+|+.|.+++++|+.+.+++.+.+.. +.+..+..++|+++++++.+. +.+++ +|++|+|+++++..++.
T Consensus 19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~lr~~la~~~~~~---~~~~~-~v~~~~G~~~al~~~~~ 94 (335)
T 1uu1_A 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD---FLSKN-NVSVGNGADEIIYVMML 94 (335)
T ss_dssp CCSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCCCSSCHHHHHHHHHHHTCS---SCCGG-GEEEESSHHHHHHHHHH
T ss_pred CcceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCCCCchHHHHHHHHHHcCCC---CCCHH-HEEEcCChHHHHHHHHH
Confidence 36899999999888899999999887621 122346788899998888643 23344 89999999999999998
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++ ||+|+++ |+|..+...++..|++++.+|++. +|.+|++++ +++ ++|++++|+ ||||.+++.++++
T Consensus 95 ~~---gd~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l-----~~~-~~v~l~~p~-nptG~~~~~~~l~ 161 (335)
T 1uu1_A 95 MF---DRSVFFP-PTYSCYRIFAKAVGAKFLEVPLTK--DLRIPEVNV-----GEG-DVVFIPNPN-NPTGHVFEREEIE 161 (335)
T ss_dssp HS---SEEEECS-SSCHHHHHHHHHHTCEEEECCCCT--TSCCCCCCC-----CTT-EEEEEESSC-TTTCCCCCHHHHH
T ss_pred Hh---CCcEEEC-CCcHHHHHHHHHcCCeEEEeccCC--CCCCCHHHc-----CCC-CEEEEeCCC-CCCCCCCCHHHHH
Confidence 87 8999999 999999999999999999999863 467887766 344 588889997 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|++.| | ++|+||+|+++.+. .. ...++.. +++++++||||.+|++|+|+||++++++ +++
T Consensus 162 ~l~~~~---~-~li~De~~~~~~~~--~~--------~~~~~~~----~~~i~~~s~sK~~g~~G~r~G~~~~~~~-~~~ 222 (335)
T 1uu1_A 162 RILKTG---A-FVALDEAYYEFHGE--SY--------VDFLKKY----ENLAVIRTFSKAFSLAAQRVGYVVASEK-FID 222 (335)
T ss_dssp HHHHTT---C-EEEEECTTHHHHCC--CC--------GGGGGTC----SSEEEEEESTTTTTCGGGCCEEEEECHH-HHH
T ss_pred HHHHhC---C-EEEEECcchhhcch--hH--------HHHhhhC----CCEEEEecchhhcCCcccCeEEEEeCHH-HHH
Confidence 998877 7 89999999765432 11 1112222 4799999999999999999999999776 999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.......+++.+.|.++..+|+ +. +++++.++.++++++.+.
T Consensus 223 ~l~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 266 (335)
T 1uu1_A 223 AYNRVRLPFNVSYVSQMFAKVALD--HR------EIFEERTKFIVEERERMK 266 (335)
T ss_dssp HHHHHSCTTCSCHHHHHHHHHHHH--TH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcCHHHHHHHHHHhC--CH------HHHHHHHHHHHHHHHHHH
Confidence 998877767899999999999994 22 456677777777777664
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-27 Score=270.85 Aligned_cols=248 Identities=11% Similarity=0.089 Sum_probs=196.8
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHc-------cCCCC-C---chHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFAR-------QNMSE-S---EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~-------y~~~~-G---~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
+..+|+|+.|+|++++|+.+.+++.+++.. |.... | .+++|+++++++.+..+...+++ +|++|+|++
T Consensus 55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~-~iv~t~G~~ 133 (427)
T 2hox_A 55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDR-YIVFGVGVT 133 (427)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTC-EEEEESHHH
T ss_pred CCceEEecCcCCCCCCCHHHHHhHHhhhhcCCcccccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCC-EEEEeCCHH
Confidence 457899999999998888888888776521 44555 8 89999999999998776666666 999999999
Q ss_pred HHHHHHHHHh--------ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC
Q 043334 683 SLFNKLVLCC--------ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISG 754 (903)
Q Consensus 683 ~al~~ll~~l--------~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~ 754 (903)
+++..++.++ ++|||.|+++.|+|+.|...++..|++++. |.+|++.|++.+++++ ++|++++
T Consensus 134 ~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~~~-k~v~l~~ 204 (427)
T 2hox_A 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQ-YIEMVTS 204 (427)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGG-EEEEEES
T ss_pred HHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCCeeee--------ecCCHHHHHHhhcCCc-eEEEEcC
Confidence 9999999999 999999999999999999999999998764 3466778887776655 5899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|+ ||||.+++ +.+ + ++.+|.|+.|. ++ ..+. ..+. . +++|+++||||.+|++
T Consensus 205 p~-NPtG~~~~-~~l-------~--~~~~i~d~~~~----~~-~~s~-------~~~~-~----~~~i~~~S~SK~~g~~ 256 (427)
T 2hox_A 205 PN-NPEGLLRH-AVI-------K--GCKSIYDMVYY----WP-HYTP-------IKYK-A----DEDILLFTMSKFTGHS 256 (427)
T ss_dssp SC-TTTCCCCC-CSS-------T--TCEEEEECTTC----ST-TTSC-------CCSC-B----CCSEEEEEHHHHTSCG
T ss_pred CC-CCcccccH-HHH-------c--CCCEEEeeccc----CC-CCCc-------cccC-C----CceEEEEeChhcCCCC
Confidence 98 99999999 422 2 56678888773 22 2111 1122 1 4899999999999999
Q ss_pred cceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccch-------hHHHHHHHHHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKAR-------DLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~-------~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|+|+||++++++++++.+.++.. ..+++.+.|.++..+|. ++. + .+++++.+.++.|++|++.+.
T Consensus 257 G~RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 330 (427)
T 2hox_A 257 GSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLK--EVV-AMVKTQKGTMRDLNTFGFKKLRERWVNIT 330 (427)
T ss_dssp GGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH--HHH-HHHHHHTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh--cch-hhhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999965449999988765 57899999999999994 220 1 123577888899999998875
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=246.71 Aligned_cols=252 Identities=13% Similarity=0.159 Sum_probs=199.4
Q ss_pred CCCCeEEccCCCC-CCCCcHHHHHHHHHHHHcc-------CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQ-------NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y-------~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+.+.|||+.|++ ++++++.+.+++.+.+..+ ....|.+++++++++++++.+|. + ++++|+|++++
T Consensus 41 ~g~~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~--~---~v~~~~ggt~a 115 (398)
T 3a2b_A 41 DGRRVLMFGSNSYLGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGK--E---AAILFSTGFQS 115 (398)
T ss_dssp TTEEEEECSCSCTTCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC--S---EEEEESSHHHH
T ss_pred CCceEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--C---cEEEECCHHHH
Confidence 4567899999988 6667889999998887642 23457789999999999999885 2 79999999999
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCcc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV---KKPWVYISGPTINPTG 761 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPTG 761 (903)
+..++.+++++||.|++++|+|+.+...++..|++++.+|+ +|++.+++.+++. ..++|++++|+ ||||
T Consensus 116 ~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~~~~~-nptG 187 (398)
T 3a2b_A 116 NLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIKYGH-------NNMEDLRAKLSRLPEDSAKLICTDGIF-SMEG 187 (398)
T ss_dssp HHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESBC-TTTC
T ss_pred HHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCCceEEeCC-------CCHHHHHHHHHhhccCCceEEEEeCCC-CCCC
Confidence 99999999999999999999999999999999999999986 4789999998762 23589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCc-eEEEccCchhcccccceeeE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN-VSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~-vI~l~S~SK~~g~~GlRiG~ 840 (903)
.+++ +++|.++|+++|++||+||+|+.+.|+.... +.....+ .. ++ +++++||||.++++| ||
T Consensus 188 ~~~~---~~~l~~~~~~~~~~li~De~~~~~~~~~~~~------~~~~~~~-~~---~~~di~~~s~sK~~~~~G---G~ 251 (398)
T 3a2b_A 188 DIVN---LPELTSIANEFDAAVMVDDAHSLGVIGHKGA------GTASHFG-LN---DDVDLIMGTFSKSLASLG---GF 251 (398)
T ss_dssp CBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC------CHHHHHT-CG---GGCSEEEEESSSTTCSSC---EE
T ss_pred CccC---HHHHHHHHHHcCcEEEEECCCcccccCCCCC------chHhhcC-CC---cCCeEEEecccccccCCC---cE
Confidence 9998 8899999999999999999998777753221 1122111 11 24 699999999999888 99
Q ss_pred EEeCcHHHHHHHHhCC---CCCCCcHHHHHH-HHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFP---GLSKPHSTVRYA-IKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 841 lv~~~~~li~~l~~~~---~~~~~s~~~Q~a-a~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++++ +++.+.... ...+.+.+.|.+ +..+|+ .. ++++++++.++++++.+.
T Consensus 252 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~--~~------~~~~~~~~~~~~~~~~l~ 308 (398)
T 3a2b_A 252 VAGDAD-VIDFLKHNARSVMFSASMTPASVASTLKALE--II------QNEPEHIEKLWKNTDYAK 308 (398)
T ss_dssp EEECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHH--HH------HHCTHHHHHHHHHHHHHH
T ss_pred EEeCHH-HHHHHHHhcccceecCCCCHHHHHHHHHHHH--HH------hhCHHHHHHHHHHHHHHH
Confidence 999876 888887743 244556677764 557773 11 335566777777776654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=228.22 Aligned_cols=252 Identities=10% Similarity=0.079 Sum_probs=190.5
Q ss_pred CCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQN-------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~-------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+...+||+.|++ .+++++.+.+++.+.+..+. ..+|..+....+++.+++++|++ + .|++++| +++
T Consensus 37 ~g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~---~-~i~~~sG-t~a 111 (384)
T 1bs0_A 37 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYS---R-ALLFISG-FAA 111 (384)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCS---E-EEEESCH-HHH
T ss_pred CCceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCC---c-EEEeCCc-HHH
Confidence 4567899999986 55678889999988876532 12244455666777777777864 2 6888888 688
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC--CcEEEEECCCCCCccc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK--KPWVYISGPTINPTGL 762 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~--~~~vil~~P~~NPTG~ 762 (903)
+..++.+++++||.|+++.|+|+.+...++..|++++.+|. .|++.+++.+++.. ++++++++|+ ||||.
T Consensus 112 ~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~v~~~~~~-nptG~ 183 (384)
T 1bs0_A 112 NQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVF-SMDGD 183 (384)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBC-TTTCC
T ss_pred HHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCC-------CCHHHHHHHHHhcCCCCeEEEEeCCC-CCCCC
Confidence 88889999999999999999999999999999999999984 47899999887642 3588888897 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+++ +++|.++|+++|++||+||+|+...++.... .....++. +..++++||||.++++| ||++
T Consensus 184 ~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~------~~~~~~~~-----~~di~~~s~sK~~~~~G---G~~~ 246 (384)
T 1bs0_A 184 SAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR------GSCWLQKV-----KPELLVVTFGKGFGVSG---AAVL 246 (384)
T ss_dssp BCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC------CHHHHTTC-----CCSEEEEESSSTTSSCC---EEEE
T ss_pred ccC---HHHHHHHHHHcCcEEEEECCcccceecCCCC------chHHhcCC-----CCcEEEeeccchhhccC---cEEE
Confidence 999 7899999999999999999997655532111 11122221 24599999999999777 9999
Q ss_pred eCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHH-HHHHHHHHHHHHHHHHh
Q 043334 843 LNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMN-AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 843 ~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~-~l~~~r~~y~~Rr~~l~ 902 (903)
++++ +++.+..... ..+++.+.|.++.++|+. - .+ +.++.++.++++++.+.
T Consensus 247 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~--~-----~~~~~~~~~~~~~~~~~~l~ 303 (384)
T 1bs0_A 247 CSST-VADYLLQFARHLIYSTSMPPAQAQALRASLAV--I-----RSDEGDARREKLAALITRFR 303 (384)
T ss_dssp ECHH-HHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHH--H-----HSHHHHHHHHHHHHHHHHHH
T ss_pred eCHH-HHHHHHHhchhhhcCCCCCHHHHHHHHHHHHH--H-----hccccHHHHHHHHHHHHHHH
Confidence 9876 8888876532 336788888888888841 1 11 45566677777776654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-23 Score=231.77 Aligned_cols=242 Identities=13% Similarity=0.070 Sum_probs=189.8
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+.++++.+.+++.+.+.. .......++++++++++++.+|.+. +.+|++|+|+++++..++.+++++||+|++++|+
T Consensus 42 ~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~--~~~v~~t~g~t~al~~~~~~~~~~gd~Vl~~~~~ 118 (393)
T 1vjo_A 42 PSNAHPSVLQAMNVSPVG-HLDPAFLALMDEIQSLLRYVWQTEN--PLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAG 118 (393)
T ss_dssp CCCCCHHHHHHHSSCCCC-TTSHHHHHHHHHHHHHHHHHHTCCC--SCEEEESSCHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred CCCCCHHHHHHHhccccc-ccCHHHHHHHHHHHHHHHHHhCCCC--CcEEEEeCchHHHHHHHHHhccCCCCEEEEEcCC
Confidence 345678888877665432 1112245788999999999999842 2269999999999999999999999999999999
Q ss_pred cHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcE
Q 043334 706 NGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 706 y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~ 782 (903)
|.. +...++..|++++.++++. ++.+|+++|++.+++ ++ ++|++++|+ ||||.+++ +++|.++|+++|++
T Consensus 119 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~ 191 (393)
T 1vjo_A 119 YFGNRLVDMAGRYGADVRTISKPW--GEVFSLEELRTALETHRP-AILALVHAE-TSTGARQP---LEGVGELCREFGTL 191 (393)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CTTHHHHHHHHTCE
T ss_pred hhHHHHHHHHHHcCCceEEEecCC--CCCCCHHHHHHHHhhCCc-eEEEEeccC-CCcceecc---HHHHHHHHHHcCCE
Confidence 999 9999999999999999975 467999999999987 66 589999998 99999998 78999999999999
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC-------
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF------- 855 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~------- 855 (903)
||+||+|+ |+..+. + +... +.+++++|+||.++.+| |+||++++++ +++.+...
T Consensus 192 li~Dea~~---~g~~~~---~-------~~~~----~~di~~~s~sK~l~~~~-~~G~l~~~~~-~~~~~~~~~~~~~~~ 252 (393)
T 1vjo_A 192 LLVDTVTS---LGGVPI---F-------LDAW----GVDLAYSCSQKGLGCSP-GASPFTMSSR-AIEKLQRRRTKVANW 252 (393)
T ss_dssp EEEECTTT---TTTSCC---C-------TTTT----TCSEEECCSSSTTCSCS-SCEEEEECHH-HHHHHHTCSSCCSCS
T ss_pred EEEECCcc---ccCcCC---c-------cccc----CccEEEEcCcccccCCC-ceEEEEECHH-HHHHHhccCCCCCce
Confidence 99999997 332211 1 1111 36899999999998888 9999999987 88888542
Q ss_pred --------------CCCC-CCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 856 --------------PGLS-KPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 856 --------------~~~~-~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.... +++.+.|.++..+|+. . .+.+++++++.++++++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~--~----~~~~~~~~~~~~~~~~~~l~ 308 (393)
T 1vjo_A 253 YLDMNLLGKYWGSERVYHHTAPINLYYALREALRL--I----AQEGLANCWQRHQKNVEYLW 308 (393)
T ss_dssp TTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHH--H----HHHCHHHHHHHHHHHHHHHH
T ss_pred ecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHH--H----HHccHHHHHHHHHHHHHHHH
Confidence 1123 6788999999988841 1 12345667777777777664
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=227.71 Aligned_cols=255 Identities=13% Similarity=0.124 Sum_probs=190.7
Q ss_pred CCCCeEEccCCCCC-CCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQSF-LPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p~-~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+.+.|||+.|++. +.+++.+.+++.+.+.++.. .+|..+..+.+++.+++++|.+ + .|++++|+ ++
T Consensus 41 ~g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~-~---~i~~~sGt-~a 115 (399)
T 3tqx_A 41 GEKEVLNFCANNYLGLADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTD-D---TILYSSCF-DA 115 (399)
T ss_dssp TTEEEEECSSCCTTSCTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCS-E---EEEESCHH-HH
T ss_pred CCeeEEEeeccCcccccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCC-c---EEEECchH-HH
Confidence 45678999999653 34688899999888876432 2455666777888888888864 2 68888885 57
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINP 759 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NP 759 (903)
+..++.+++++||.|+++.|+|+.+...++..|++++.++. +|++.+++.+++. ..++|++++|+ ||
T Consensus 116 ~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~~~v~~~~~~-np 187 (399)
T 3tqx_A 116 NGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQRYRYKN-------NAMGDLEAKLKEADEKGARFKLIATDGVF-SM 187 (399)
T ss_dssp HHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCCSEEEEECT-------TCTTHHHHHHHHHHTTTCSSEEEEEESEE-TT
T ss_pred HHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCceeEeCC-------CCHHHHHHHHHhhhccCCCceEEEEeCCC-CC
Confidence 77888999999999999999999999999999999999986 3567787777651 33699999997 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++|++||+||+|+...++.... +.....+-.. +++++++||||.++ |.+.|
T Consensus 188 tG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~~~~~------~~~~~~~~~~---~~di~~~s~sK~~~--g~~gG 253 (399)
T 3tqx_A 188 DGIIAD---LKSICDLADKYNALVMVDDSHAVGFIGENGR------GTPEYCGVAD---RVDILTGTLGKALG--GASGG 253 (399)
T ss_dssp TTEECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC------CHHHHHTCTT---CCSEEEEESSSSSC--SSCCE
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEECCccccccCCCCC------chHHhhCCCC---CCcEEEecchHhcc--cCceE
Confidence 999999 8899999999999999999996333333321 1122221111 36799999999998 45559
Q ss_pred EEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|++++++ +++.+..... ...++...+.++..+++. ..++.+++++.++++++.+.
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~l~ 312 (399)
T 3tqx_A 254 YTSGHKE-IIEWLRNRSRPYLFSNTVAPVIVATSLKVLEL-------LKTEGPQLRKQLQENSRYFR 312 (399)
T ss_dssp EEEECHH-HHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHH-------HHHTHHHHHHHHHHHHHHHH
T ss_pred EEEcCHH-HHHHHHHhCcceeccCCCcHHHHHHHHHHHHH-------HhhccHHHHHHHHHHHHHHH
Confidence 9999987 8888887532 345667777777777731 11456677777777777664
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=230.86 Aligned_cols=221 Identities=12% Similarity=0.005 Sum_probs=174.8
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHH---c----cCCC-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFA---R----QNMS-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~---~----y~~~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..++++++|++++|+.+.+++.+.+. . |.+. .|. +..+.+++.+++++|.+ ++++++|+++++..+
T Consensus 20 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~-~~~~~l~~~ia~~~g~~-----~~i~~~~g~~ai~~~ 93 (404)
T 1e5e_A 20 DQFGAAIPPIYQTSTFVFDNCQQGGNRFAGQESGYIYTRLGN-PTVSNLEGKIAFLEKTE-----ACVATSSGMGAIAAT 93 (404)
T ss_dssp CTTCCSSCCCCCCSBCCCSSHHHHHHHHTTSSCSCCBTTTCC-HHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHH
T ss_pred CCCCCcCCCCcCCCccccCCHHHHHHhhcCCcCCccccCCcC-hHHHHHHHHHHHHhCCC-----cEEEeCChHHHHHHH
Confidence 45789999999988777666655543 1 2122 233 33445666666666653 466666667999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCC
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~ 764 (903)
+.+++++||.|++++|+|+.+.. .++..|++++.++++ |++++++.+++++ ++|++++|+ ||||.++
T Consensus 94 ~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~t-~~v~l~~p~-NptG~v~ 164 (404)
T 1e5e_A 94 VLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-------IPGEVKKHMKPNT-KIVYFETPA-NPTLKII 164 (404)
T ss_dssp HHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-------STTHHHHHCCTTE-EEEEEESSC-TTTCCCC
T ss_pred HHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-------CHHHHHHhcCCCC-cEEEEECCC-CCCCccc
Confidence 99999999999999999999988 788899999999874 5788999888766 599999998 9999999
Q ss_pred CHHHHHHHHHHHHh-CCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEE
Q 043334 765 SNKEIENILTVCAK-YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLV 842 (903)
Q Consensus 765 s~eel~eI~~ia~k-~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv 842 (903)
+ +++|.++|++ +|++||+||+|..+.+. . + +. . +++++++|+||.|+++|+|+ ||++
T Consensus 165 ~---l~~i~~la~~~~~~~li~De~~~~~~~~--~-------~-~~----~----~~di~~~S~sK~~~~~g~ri~G~~~ 223 (404)
T 1e5e_A 165 D---MERVCKDAHSQEGVLVIADNTFCSPMIT--N-------P-VD----F----GVDVVVHSATKYINGHTDVVAGLIC 223 (404)
T ss_dssp C---HHHHHHHHHTSTTCEEEEECTTTCTTTC--C-------G-GG----G----TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred C---HHHHHHHHHhhcCCEEEEECCCchhhhC--C-------c-cc----c----CCEEEEEcCccccCCCCCCeEEEEE
Confidence 7 8999999999 99999999999876553 1 1 11 1 36899999999999999998 9999
Q ss_pred eCcHHHHH-HHHhCCCC---CCCcHHHHHHHHHHHh
Q 043334 843 LNHPQLVD-AFSSFPGL---SKPHSTVRYAIKKLLG 874 (903)
Q Consensus 843 ~~~~~li~-~l~~~~~~---~~~s~~~Q~aa~~~L~ 874 (903)
++++ +++ .+...... .+++.+.|.++...|.
T Consensus 224 ~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~ 258 (404)
T 1e5e_A 224 GKAD-LLQQIRMVGIKDITGSVISPHDAWLITRGLS 258 (404)
T ss_dssp ECHH-HHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT
T ss_pred ECHH-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh
Confidence 9988 777 88876653 3578889999888884
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-22 Score=221.77 Aligned_cols=247 Identities=9% Similarity=0.060 Sum_probs=186.4
Q ss_pred EEccCCCCCCCCcHHHHHHHHHHHHc-cCCC-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFESFAR-QNMS-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~al~~-y~~~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
+.|+.+.+. ++|+.+.+++.+.+.. |... ++..+..+.+++.+++++|.+.+ +|++|+|+++++..++
T Consensus 3 ~yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~~~~ 78 (384)
T 1eg5_A 3 VYFDNNATT-RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS---EIFFTSCATESINWIL 78 (384)
T ss_dssp EECBTTTCC-CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG---GEEEESCHHHHHHHHH
T ss_pred EEEecCccC-CCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC---eEEEECCHHHHHHHHH
Confidence 567777766 6788999999998865 2111 11223446677777777786543 8999999999999999
Q ss_pred HHhc----cCCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 690 LCCI----LEGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 690 ~~l~----~pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
.+++ ++||+|+++.|+|+.+...+ +..|++++.+|++. ++.+|+++|++.+++++ ++|++++|+ ||||.
T Consensus 79 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~~~~-nptG~ 154 (384)
T 1eg5_A 79 KTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDT-FLVSIMAAN-NEVGT 154 (384)
T ss_dssp HHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTE-EEEEEESBC-TTTCB
T ss_pred HhhhhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCC--CCccCHHHHHHHhCCCC-eEEEEECCC-CCccc
Confidence 9998 79999999999999887666 77899999999864 56799999999998765 589999998 99999
Q ss_pred CCCHHHHHHHHHHHHhCC--cEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 763 LYSNKEIENILTVCAKYG--ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~--i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
+++ +++|.++|+++| ++||+||+|+ |+.... + +... +.++++.|+||.+|++| +||
T Consensus 155 ~~~---~~~i~~l~~~~~~~~~li~Dea~~---~~~~~~---~-------~~~~----~~di~~~s~sK~~g~~G--~G~ 212 (384)
T 1eg5_A 155 IQP---VEDVTRIVKKKNKETLVHVDAVQT---IGKIPF---S-------LEKL----EVDYASFSAHKFHGPKG--VGI 212 (384)
T ss_dssp BCC---HHHHHHHHHHHCTTCEEEEECTTT---TTTSCC---C-------CTTT----CCSEEEEEGGGGTSCTT--CEE
T ss_pred ccC---HHHHHHHHHhcCCceEEEEEhhhh---cCCccc---C-------chhc----CCCEEEecHHHhcCCCc--eEE
Confidence 999 688899999999 9999999996 332221 1 1111 25789999999999889 799
Q ss_pred EEeCcHHH--HHHHHhC-----CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 841 LVLNHPQL--VDAFSSF-----PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 841 lv~~~~~l--i~~l~~~-----~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++++ + ...+... ....+++.+.|.++..+|+ . +.++++++++.++++++.+.
T Consensus 213 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~--~-----~~~~~~~~~~~~~~~~~~l~ 273 (384)
T 1eg5_A 213 TYIRKG-VPIRPLIHGGGQERGLRSGTQNVPGIVGAARAME--I-----AVEELSEAAKHMEKLRSKLV 273 (384)
T ss_dssp EEECTT-SCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHH--H-----HHHTHHHHHHHHHHHHHHHH
T ss_pred EEEcCC-CccccccccCcccccccCCCCChHHHHHHHHHHH--H-----HHHhHHHHHHHHHHHHHHHH
Confidence 999987 4 2222111 0245678889999888884 1 12456667777777776654
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=222.98 Aligned_cols=239 Identities=11% Similarity=0.050 Sum_probs=183.6
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
+.++.+.+++.+.+.. .......++++++++++++.+|.+ +++ ++++|+|+++++..++.+++++||+|++++|+|.
T Consensus 30 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~-~~~-~v~~~~g~t~a~~~~~~~l~~~gd~vl~~~~~~~ 106 (386)
T 2dr1_A 30 ACFPEVLEIMKVQMFS-HRSKEYRKVHMDTVERLREFLEVE-KGE-VLLVPSSGTGIMEASIRNGVSKGGKVLVTIIGAF 106 (386)
T ss_dssp CCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHHTCS-SSE-EEEESSCHHHHHHHHHHHHSCTTCEEEEEESSHH
T ss_pred CCcHHHHHHHhccccc-ccCHHHHHHHHHHHHHHHHHhCCC-CCc-EEEEeCChHHHHHHHHHHhhcCCCeEEEEcCCch
Confidence 4567777776554322 111123678999999999999987 334 7999999999999999999999999999999999
Q ss_pred H--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 708 N--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 708 ~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
. +...++..|++++.++++. ++.+|+++|++.++ +++ ++|++++|+ ||||.+++ +++|.++|+++|++|
T Consensus 107 ~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~l 179 (386)
T 2dr1_A 107 GKRYKEVVESNGRKAVVLEYEP--GKAVKPEDLDDALRKNPDV-EAVTITYNE-TSTGVLNP---LPELAKVAKEHDKLV 179 (386)
T ss_dssp HHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHCTTC-CEEEEESEE-TTTTEECC---HHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHhCCceEEEecCC--CCCCCHHHHHHHHhcCCCC-cEEEEEeec-CCcchhCC---HHHHHHHHHHcCCeE
Confidence 8 8899999999999999864 56799999999985 344 599999998 99999988 799999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH----------
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS---------- 853 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~---------- 853 (903)
|+||+|+...+. . + +... +.+++++|+||.++.++ ++||++++++ +++.+.
T Consensus 180 i~D~a~~~~~~~---~---~-------~~~~----~~di~~~s~sK~~~~~~-g~G~~~~~~~-~~~~~~~~~~~~~~~~ 240 (386)
T 2dr1_A 180 FVDAVSAMGGAD---I---K-------FDKW----GLDVVFSSSQKAFGVPP-GLAIGAFSER-FLEIAEKMPERGWYFD 240 (386)
T ss_dssp EEECTTTBTTBC---C---C-------TTTT----TCSEEEEETTSTTCCCS-SCEEEEECHH-HHHHHTTCTTCCSTTC
T ss_pred EEEccccccCcc---c---c-------cccc----CCcEEEEeccccccCCC-ceEEEEECHH-HHHHHhcCCCCceEEe
Confidence 999999754331 1 1 1111 36899999999998763 3999999987 877762
Q ss_pred ------h----CCCCCCCcHHHHHHHHHHHhcccccchhHHHH--HHHHHHHHHHHHHHHh
Q 043334 854 ------S----FPGLSKPHSTVRYAIKKLLGLRERKARDLMNA--VAEHIRNLESRSKRLK 902 (903)
Q Consensus 854 ------~----~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~--l~~~r~~y~~Rr~~l~ 902 (903)
. .....+++...|.++..+|+. +.++ ++++++.++++++.+.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-------~~~~g~~~~~~~~~~~~~~~l~ 294 (386)
T 2dr1_A 241 IPLYVKYLKEKESTPSTPPMPQVFGINVALRI-------IEKMGGKEKWLEMYEKRAKMVR 294 (386)
T ss_dssp HHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHH-------HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHH
Confidence 1 123556788899999888841 1122 4556666666666553
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=225.72 Aligned_cols=213 Identities=15% Similarity=0.175 Sum_probs=171.0
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCC-----CCCc----hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNM-----SESE----IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~-----~~G~----~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
++++|+|+.|.+. ++|+.+.+++.+.+..+.. ...+ .+..+.+++.+++++|.. +++ +|++|+|++++
T Consensus 26 g~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~-~~~-~v~~~~g~t~a 102 (420)
T 1t3i_A 26 GHPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR-SPR-EIVYTRNATEA 102 (420)
T ss_dssp TEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCS-CGG-GEEEESSHHHH
T ss_pred CCceEEecCCccC-CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCC-CCC-eEEEcCChHHH
Confidence 3458999999998 7789999999988865321 1112 234566777777777873 233 89999999999
Q ss_pred HHHHHHHh----ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 685 FNKLVLCC----ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 685 l~~ll~~l----~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+..++.++ +++||+|+++.|+|+. +...++..|++++.++++ +++.+|++++++++++++ ++|++++|+
T Consensus 103 ~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~l~~~~-~~v~~~~~~ 179 (420)
T 1t3i_A 103 INLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLD--EQESFDLEHFKTLLSEKT-KLVTVVHIS 179 (420)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBC--TTSSBCHHHHHHHCCTTE-EEEEEESBC
T ss_pred HHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccC--CCCCcCHHHHHHhhCCCc-eEEEEeCCc
Confidence 99999999 8999999999999998 677788899999999986 357799999999998765 589999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++ +++|.++|+++|++||+|++|+.... . .+ ...+ +.++++.|+||.+|.+|
T Consensus 180 -nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~~~~---~---~~----~~~~-------~~di~~~s~sK~~~~~g- 237 (420)
T 1t3i_A 180 -NTLGCVNP---AEEIAQLAHQAGAKVLVDACQSAPHY---P---LD----VQLI-------DCDWLVASGHKMCAPTG- 237 (420)
T ss_dssp -TTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---C---CC----HHHH-------TCSEEEEEGGGTTSCTT-
T ss_pred -ccccCcCC---HHHHHHHHHHcCCEEEEEhhhccCCc---c---Cc----hhhc-------CCCEEEEehhhhcCCCc-
Confidence 99999999 88999999999999999999964221 1 11 1111 25789999999998888
Q ss_pred eeeEEEeCcHHHHHHHHhCC
Q 043334 837 KFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~ 856 (903)
+||++++++ +++.+....
T Consensus 238 -~G~~~~~~~-~~~~~~~~~ 255 (420)
T 1t3i_A 238 -IGFLYGKEE-ILEAMPPFF 255 (420)
T ss_dssp -CEEEEECHH-HHHHSCCCS
T ss_pred -eEEEEEchH-HHhhcCcee
Confidence 999999977 888876653
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-22 Score=226.14 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=163.8
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccC---------CCCCchHHHHHHHHH-HHhhcCCCCCCCCcEEecCchHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQN---------MSESEIDVTPSIQQY-IKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~---------~~~G~~~lr~ala~~-l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
+++++.|+.|.+..++++.+.+++.+.+.... ..++..+..+.+++. +++++|.+ +|++|+|+++
T Consensus 6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~-----~v~~~~g~t~ 80 (371)
T 2e7j_A 6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD-----VARVTNGARE 80 (371)
T ss_dssp --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS-----EEEEESSHHH
T ss_pred CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC-----EEEEeCChHH
Confidence 56789999988777889999999888765421 112233344556666 66666764 6999999999
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEec--CCCCCCcccCHHHHHHHhh-----cCCCcEEEEECCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIP--TESEVGFKMTEKTLVTILE-----TVKKPWVYISGPT 756 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~--~~~~~~f~ld~~~L~~~l~-----~~~~~~vil~~P~ 756 (903)
++..++.+++++||+|++++|+|+.+...++..|++++.++ .++ ++.+|++++++.++ +++ +++++++|+
T Consensus 81 a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~--~~~~d~~~l~~~l~~~~~~~~~-~~v~~~~~~ 157 (371)
T 2e7j_A 81 AKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYP--DYAITPENFAQTIEETKKRGEV-VLALITYPD 157 (371)
T ss_dssp HHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTT--TCCCCHHHHHHHHHHHTTTSCE-EEEEEESSC
T ss_pred HHHHHHHHHhCCCCEEEEccCcchHHHHHHHHcCCeEEEeecccCC--CCCcCHHHHHHHHHhhcccCCe-EEEEEECCC
Confidence 99999999999999999999999999999999999999999 653 47799999999987 444 589999997
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++ +++|.++|+++|++||+||+|+...+. .+ ...+ +..++++|+||.++.+ .
T Consensus 158 -nptG~~~~---~~~i~~~~~~~~~~li~D~a~~~~~~~------~~----~~~~-------~~di~~~s~sK~~~~~-~ 215 (371)
T 2e7j_A 158 -GNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMP------VS----LKEI-------GADFIVGSGHKSMAAS-G 215 (371)
T ss_dssp -TTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBC------CC----HHHH-------TCSEEEEEHHHHSSCC-S
T ss_pred -CCCcccCC---HHHHHHHHHHcCCeEEEECccccCCCC------CC----hhhc-------CCCEEEecCCcCCCCC-C
Confidence 99999999 689999999999999999999753321 11 1111 2458999999999854 5
Q ss_pred eeeEEEeCcHHHHHH-HHhCC
Q 043334 837 KFGFLVLNHPQLVDA-FSSFP 856 (903)
Q Consensus 837 RiG~lv~~~~~li~~-l~~~~ 856 (903)
|+||++++++ +++. +....
T Consensus 216 ~~G~~~~~~~-~~~~~~~~~~ 235 (371)
T 2e7j_A 216 PIGVMGMKEE-WAEIVLRRSE 235 (371)
T ss_dssp SCEEEEECTT-TTTTTTCBCS
T ss_pred CcEEEEEech-hhhhhccccc
Confidence 9999999987 7776 66544
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-22 Score=224.88 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=188.6
Q ss_pred CCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.|...+||+.+++ .++.++.+.+++.+.+.+|.. ..|..++++++++++++++|.+. .+++++|+ ++
T Consensus 57 ~g~~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~----~i~~~sGt-~a 131 (409)
T 3kki_A 57 ASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDE----CLLSQSGW-NA 131 (409)
T ss_dssp CCTTSEECCCSCTTCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSE----EEEESCHH-HH
T ss_pred CCCceEEeeccCccCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCe----EEEecchH-HH
Confidence 4667899977653 255788999999999887532 23555667778888888888652 47777775 88
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLY 764 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~ 764 (903)
+..++.+++++||.|+++.|+|+.+...++..|++++.++. +|++++++.+++...++|++++|+ ||||.++
T Consensus 132 ~~~~l~~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~vi~~~~~-nptG~~~ 203 (409)
T 3kki_A 132 NVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMH-------NNCDHLRMLIQRHGPGIIVVDSIY-STLGTIA 203 (409)
T ss_dssp HHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECT-------TCHHHHHHHHHHHCSCEEEEESBC-TTTCCBC
T ss_pred HHHHHHHhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecC-------CCHHHHHHHHHhcCCeEEEECCCC-CCCCCcC
Confidence 88889999999999999999999999999999999998875 579999999986433699999997 9999999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+ +++|.++|+++|++||+||+|+...|+.... ......+..+ +..|++.||||+++++| ||++++
T Consensus 204 ~---l~~l~~la~~~~~~li~De~~~~g~~g~~g~------~~~~~~~~~~---~~di~~~s~sK~~~~~g---g~v~~~ 268 (409)
T 3kki_A 204 P---LAELVNISKEFGCALLVDESHSLGTHGPNGA------GLLAELGLTR---EVHFMTASLAKTFAYRA---GAIWCN 268 (409)
T ss_dssp C---HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC------CHHHHHTCGG---GCSEEEEESSSTTCSSC---EEEEES
T ss_pred C---HHHHHHHHHHcCCEEEEECCccccccCCCCC------cchhhcCCCC---CCCEEEeecchhhCCCc---eEEEEC
Confidence 9 8899999999999999999998765643321 1111111111 35699999999998765 999999
Q ss_pred cHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 845 HPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 845 ~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++ +++.+..... ....+...+.++.++++. + +...++++.++++++++.
T Consensus 269 ~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~-------~-~~~~~~~~~~~~~~~~l~ 321 (409)
T 3kki_A 269 NE-VNRCVPFISYPAIFSSTLLPYEAAGLETTLEI-------I-ESADNRRQHLDRMARKLR 321 (409)
T ss_dssp SS-GGGTHHHHCHHHHHSBCCCHHHHHHHHHHHHH-------H-HHCHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHhCcCccccCCCcHHHHHHHHHHHHH-------H-hcCHHHHHHHHHHHHHHH
Confidence 87 7777766432 333555666666666731 1 112456666777766654
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=218.91 Aligned_cols=229 Identities=15% Similarity=0.155 Sum_probs=176.8
Q ss_pred CCCCeEEccCCCCCCC--CcHHHHHHHHHHHHccCCCC-------CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQSFLP--IPSLVKAAIFESFARQNMSE-------SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~--~p~~v~~al~~al~~y~~~~-------G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+...|||+.|.+ ++ +++.+.+++.+.+..+.... |..+....+++.+++++|.+ + .|++++|+.
T Consensus 43 ~g~~~id~~~~~~-~g~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~-~---~i~~~sGs~- 116 (401)
T 1fc4_A 43 DGSHVINFCANNY-LGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME-D---AILYSSCFD- 116 (401)
T ss_dssp TSCEEEECCCSCT-TSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-E---EEEESCHHH-
T ss_pred CCccEEEeeccCc-ccccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCC-c---EEEeCChHH-
Confidence 5678999999954 54 58899999998887654321 11344556666666777775 3 788888855
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc------CCCcEEEEECCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET------VKKPWVYISGPTI 757 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~------~~~~~vil~~P~~ 757 (903)
++..++.+++++||.|+++.|+|+.+...++..|++++.++. .|++.+++.+++ ++ ++|++++|+
T Consensus 117 a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~-------~d~~~l~~~l~~~~~~~~~~-~~v~~~~~~- 187 (401)
T 1fc4_A 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYAN-------NDMQELEARLKEAREAGARH-VLIATDGVF- 187 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECT-------TCHHHHHHHHHHHHHTTCSS-EEEEEESEE-
T ss_pred HHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCceEEECC-------CCHHHHHHHHHHhhccCCCc-eEEEEeCCc-
Confidence 677788889999999999999999998899999999999974 478889888865 44 589999997
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCcc-CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEF-NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTG 834 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f-~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~ 834 (903)
||||.+++ +++|.++|+++|++||+||+|+ ++.+ ++... ...++-.+ +.+++++||||.+ +++
T Consensus 188 nptG~~~~---~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~--------~~~~~~~~---~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 188 SMDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGRGS--------HEYCDVMG---RVDIITGTLGKALGGAS 253 (401)
T ss_dssp TTTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCH--------HHHTTCTT---CCSEEEEESSSTTCSSS
T ss_pred CCCCCCCC---HHHHHHHHHHcCCEEEEECcccccccCCCCCcc--------HHHcCCCc---CCcEEEecchhhccCCC
Confidence 99999999 8999999999999999999995 6654 33321 11111111 3679999999999 666
Q ss_pred cceeeEEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
| ||++++++ +++.+..... ..+++.+.|.++..+|+
T Consensus 254 g---G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~ 293 (401)
T 1fc4_A 254 G---GYTAARKE-VVEWLRQRSRPYLFSNSLAPAIVAASIKVLE 293 (401)
T ss_dssp C---EEEEECHH-HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHH
T ss_pred C---EEEEcCHH-HHHHHHHhCcCceeCCCCCHHHHHHHHHHHH
Confidence 5 99999876 8888877542 45788899999988884
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.9e-22 Score=223.21 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=175.1
Q ss_pred EEccCCCCCCCCcHHHHHHHHHHHH-------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFESFA-------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~al~-------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
..+++++|++..++.+.+++.+++. .|.+..+..+..+++++++++.+|.+ + .|++++|+ +++..++.
T Consensus 23 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~---~i~~~sG~-~a~~~~l~ 97 (398)
T 2rfv_A 23 STGALSTPIFQTSTFVFDSAEQGAARFALEESGYIYTRLGNPTTDALEKKLAVLERGE-A---GLATASGI-SAITTTLL 97 (398)
T ss_dssp TTCCSSCCCCCCSBCCCSSHHHHHHHC-----CCSBTTTCCHHHHHHHHHHHHHHTCS-E---EEEESSHH-HHHHHHHH
T ss_pred CCCCcCCCCcCCCccccCCHHHHHHhhcCCCCCCceeCCCChHHHHHHHHHHHHhCCC-c---EEEECCHH-HHHHHHHH
Confidence 3688999998876665555554443 23333445677888999999988875 2 57777766 99999999
Q ss_pred HhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ 766 (903)
+++++||.|+++.|+|+.+...+ +..|++++.++++ |++++++.+++++ ++|++++|+ ||||.+++
T Consensus 98 ~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~- 167 (398)
T 2rfv_A 98 TLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-------KPEEIRAAMRPET-KVVYIETPA-NPTLSLVD- 167 (398)
T ss_dssp HHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-------SHHHHHHHCCTTE-EEEEEESSB-TTTTBCCC-
T ss_pred HHhCCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHhcCCCC-eEEEEECCC-CCCCcccC-
Confidence 99999999999999999988876 8889999999873 7899999998766 599999998 99999998
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCc
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNH 845 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~ 845 (903)
+++|.++|+++|+++|+||+|+...+.. . .. . +.++++.|+||.++++|+|+ ||+++++
T Consensus 168 --l~~i~~l~~~~~~~li~De~~~~~~~~~-~---------~~----~----~~di~~~s~sK~~~~~g~~~~G~~~~~~ 227 (398)
T 2rfv_A 168 --IETVAGIAHQQGALLVVDNTFMSPYCQQ-P---------LQ----L----GADIVVHSVTKYINGHGDVIGGIIVGKQ 227 (398)
T ss_dssp --HHHHHHHHHHTTCEEEEECTTTCTTTCC-G---------GG----G----TCSEEEEETTTTTTCSSCCCCEEEEECH
T ss_pred --HHHHHHHHHHcCCEEEEECCCcccccCC-c---------hh----h----CCcEEEEeCcccccCCCCceEEEEEECH
Confidence 8999999999999999999997654421 1 11 1 26799999999999999999 9999998
Q ss_pred HHHHH-HHHhCCC---CCCCcHHHHHHHHHHHh
Q 043334 846 PQLVD-AFSSFPG---LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 846 ~~li~-~l~~~~~---~~~~s~~~Q~aa~~~L~ 874 (903)
+ +++ .+..... ..+.+.+.|.++..+|+
T Consensus 228 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (398)
T 2rfv_A 228 E-FIDQARFVGLKDITGGCMSPFNAWLTLRGVK 259 (398)
T ss_dssp H-HHHHHHHTHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHhCCCCCCCHHHHHHHHhhhh
Confidence 7 666 5554332 34677888999888884
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-21 Score=222.03 Aligned_cols=233 Identities=18% Similarity=0.142 Sum_probs=180.1
Q ss_pred CCCCeEEccCCCC-CCCCcHHHHHHHHHHHHccC-------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQS-FLPIPSLVKAAIFESFARQN-------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~-------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.|.+.|||+.|++ .+.+++.+.+++.+.+.++. ...|..+....+++.+++++|.+ + .+++++|+. +
T Consensus 62 ~g~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~---~-~i~~~sGs~-a 136 (427)
T 2w8t_A 62 RGKDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTT---G-AIVFSTGYM-A 136 (427)
T ss_dssp TTEEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCS---E-EEEESCHHH-H
T ss_pred CCceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCC---c-eEEecCcHH-H
Confidence 4567899999975 44578889999998887643 23455567778888888888864 2 677777765 6
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCcc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV---KKPWVYISGPTINPTG 761 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPTG 761 (903)
+..++.+++++||.|+++.|+|+.+...++..|++++.++. .|++.|++.+++. ..++|++++|+ ||||
T Consensus 137 ~~~al~~l~~~gd~vl~~~~~h~~~~~~~~~~g~~~~~~~~-------~d~~~le~~l~~~~~~~~~~v~~~~~~-n~tG 208 (427)
T 2w8t_A 137 NLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRH-------NSVEDLDKRLGRLPKEPAKLVVLEGVY-SMLG 208 (427)
T ss_dssp HHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECT-------TCHHHHHHHHHTSCSSSCEEEEEESEE-TTTT
T ss_pred HHHHHHHhcCCCCEEEECCcccHHHHHHHHHcCCeeEEeCC-------CCHHHHHHHHHhccCCCCeEEEEcCCC-CCCC
Confidence 66678889999999999999999999999999999999874 5899999998762 33589999997 9999
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.+++ +++|.++|+++|+++|+||+|+.+.++.... +....++-.+ +.+++++||||.+|++| ||+
T Consensus 209 ~~~~---l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~------~~~~~~~~~~---~~di~~~s~sK~~g~~g---G~v 273 (427)
T 2w8t_A 209 DIAP---LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGR------GVYEAQGLEG---QIDFVVGTFSKSVGTVG---GFV 273 (427)
T ss_dssp EECC---HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC------CHHHHTTCTT---CCSEEEEESSSTTCSCC---EEE
T ss_pred CccC---HHHHHHHHHHcCCEEEEECCccccccCCCCC------chHhhcCCCc---CCcEEEecchhhhccCC---CEE
Confidence 9998 8899999999999999999999877764332 1122122111 46899999999998777 999
Q ss_pred EeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 842 VLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 842 v~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
+++++ +++.+..... ..+.+...+.++..+|+
T Consensus 274 ~~~~~-l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~ 309 (427)
T 2w8t_A 274 VSNHP-KFEAVRLACRPYIFTASLPPSVVATATTSIR 309 (427)
T ss_dssp EECCT-TGGGGGGTCHHHHSSCCCCHHHHHHHHHHHH
T ss_pred EeCHH-HHHHHHHhcccccccCCCCHHHHHHHHHHHH
Confidence 99887 8887776531 34556666666667774
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=218.36 Aligned_cols=213 Identities=14% Similarity=0.140 Sum_probs=169.2
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCC-------CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSE-------SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~-------G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
|++++.|+.+.+. +.|+.+.+++.+.+..+. +.. +..+..+.+++.+++++|.+ +++ +|++|+|++++
T Consensus 21 g~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-~~~-~v~~~~g~t~a 97 (406)
T 1kmj_A 21 GLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINAR-SAE-ELVFVRGTTEG 97 (406)
T ss_dssp TEECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCS-CGG-GEEEESSHHHH
T ss_pred CCceEEecCCccC-CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCC-CCC-eEEEeCChhHH
Confidence 4568999999988 577889999988887532 111 12344567777788888873 233 89999999999
Q ss_pred HHHHHHHh----ccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 685 FNKLVLCC----ILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 685 l~~ll~~l----~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+..++.++ +++||+|+++.|+|.+ +...++..|++++.++++. ++.+|++++++.+++++ ++|++++|+
T Consensus 98 ~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~l~~~~-~~v~~~~~~ 174 (406)
T 1kmj_A 98 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNP--DGTLQLETLPTLFDEKT-RLLAITHVS 174 (406)
T ss_dssp HHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCT--TSCBCGGGHHHHCCTTE-EEEEEESBC
T ss_pred HHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCC--CCCcCHHHHHHHhccCC-eEEEEeCCC
Confidence 99999999 8999999999999764 4566788899999999864 56799999999998765 589999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++ +++|.++|+++|++||+||+|+.... . .+ +. .. +.+++++|+||.+|++|
T Consensus 175 -nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~g~~---~---~~----~~---~~----~~d~~~~s~~K~~g~~G- 232 (406)
T 1kmj_A 175 -NVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMHH---P---VD----VQ---AL----DCDFYVFSGHKLYGPTG- 232 (406)
T ss_dssp -TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTTS---C---CC----HH---HH----TCSEEEEEGGGTTSCTT-
T ss_pred -ccccCcCC---HHHHHHHHHHcCCEEEEEchhhcCCC---C---Cc----cc---cc----CCCEEEEEchhccCCCC-
Confidence 99999999 88999999999999999999964211 1 11 11 11 26789999999999888
Q ss_pred eeeEEEeCcHHHHHHHHhCC
Q 043334 837 KFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~ 856 (903)
+||++++++ +++.+....
T Consensus 233 -~G~~~~~~~-~~~~~~~~~ 250 (406)
T 1kmj_A 233 -IGILYVKEA-LLQEMPPWE 250 (406)
T ss_dssp -CEEEEECHH-HHHHCCCSS
T ss_pred -cEEEEEeHH-HHhhcCCcc
Confidence 899999876 888876543
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=225.59 Aligned_cols=253 Identities=11% Similarity=0.026 Sum_probs=189.5
Q ss_pred CCCCCeEEccCCCCCCCCcHHHHHHHHHHHH--c-cCCC--------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCc
Q 043334 612 TPNSGLIHMDVDQSFLPIPSLVKAAIFESFA--R-QNMS--------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADC 680 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~~p~~v~~al~~al~--~-y~~~--------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~G 680 (903)
..+++.|.|+.+.+. ++|+.+.+++.+.+. . +... ++..+..+.+++++++.+|.+.+ +|++|+|
T Consensus 18 ~~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~v~~~~g 93 (423)
T 3lvm_A 18 RAMKLPIYLDYSATT-PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR---EIVFTSG 93 (423)
T ss_dssp --CCSSEECBTTTCC-CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG---GEEEESS
T ss_pred cccCCCEeecCCCcC-CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC---eEEEeCC
Confidence 467789999988876 678889998888765 2 2211 12235567888889988888644 8999999
Q ss_pred hHHHHHHHHHHhcc----CCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEE
Q 043334 681 SQSLFNKLVLCCIL----EGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYIS 753 (903)
Q Consensus 681 s~~al~~ll~~l~~----pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~ 753 (903)
+++++..++.++++ +||.|+++.|+|+.+...+ +..|++++.++++. ++.+|++++++++++++ ++++++
T Consensus 94 gt~a~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~ 170 (423)
T 3lvm_A 94 ATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDT-ILVSIM 170 (423)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTE-EEEECC
T ss_pred hHHHHHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCC--CCccCHHHHHHhcCCCc-EEEEEe
Confidence 99999999998885 8999999999999998877 44599999999875 56789999999998766 588899
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc
Q 043334 754 GPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT 833 (903)
Q Consensus 754 ~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~ 833 (903)
+|+ ||||.+++ +++|.++|+++|++||+||+|+...+ . .+ +... +..+++.|+||.+|.
T Consensus 171 ~~~-nptG~~~~---l~~i~~l~~~~~~~li~Dea~~~~~~---~---~~-------~~~~----~~di~~~s~sK~~g~ 229 (423)
T 3lvm_A 171 HVN-NEIGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---P---ID-------LSQL----KVDLMSFSGHKIYGP 229 (423)
T ss_dssp SBC-TTTCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---C---CC-------TTTS----CCSEEEEESTTTTSC
T ss_pred CCC-CCCccccC---HHHHHHHHHHcCCEEEEEhhhhcCCC---C---cC-------hhhc----CCCEEEechHHhcCC
Confidence 997 99999999 78899999999999999999864211 1 00 1111 357899999999887
Q ss_pred ccceeeEEEeCcHHHHHHHHhCC---------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 834 GALKFGFLVLNHPQLVDAFSSFP---------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 834 ~GlRiG~lv~~~~~li~~l~~~~---------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+| +||++++++ +++.+.... ....++...+.++..++.. +.++++++++.++++++.+.
T Consensus 230 ~g--~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~~l~ 297 (423)
T 3lvm_A 230 KG--IGALYVRRK-PRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI-------AKEEMATEMERLRGLRNRLW 297 (423)
T ss_dssp SS--CEEEEECBT-TBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred CC--eEEEEEecc-ccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 77 899999976 555554432 1344566667666666631 22345666677777766653
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-22 Score=223.11 Aligned_cols=220 Identities=13% Similarity=0.076 Sum_probs=172.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
..+.+|+|+.+.+. ++++.+.+++.+.+..|....|..++++++++++++.+|.+.+ +|++|+|+++++..++.++
T Consensus 11 ~~p~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~g~~~~---~v~~~~g~t~a~~~~~~~~ 86 (359)
T 1svv_A 11 AKPKPYSFVNDYSV-GMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA---DVHFISGGTQTNLIACSLA 86 (359)
T ss_dssp ----CEECSCSCSS-CCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS---EEEEESCHHHHHHHHHHHH
T ss_pred CCCeeEEecCCCcC-CCCHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCCCCc---cEEEeCCchHHHHHHHHHH
Confidence 44568999997776 6788999999998877777788899999999999999996543 8999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHH--HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC------CcEEEEECCCCCCcccCC
Q 043334 693 ILEGGTLCFPAGSNGNYVS--AARFLKANIVNIPTESEVGFKMTEKTLVTILETVK------KPWVYISGPTINPTGLLY 764 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~--~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~------~~~vil~~P~~NPTG~v~ 764 (903)
+++||.|++++|+|+.+.. .++..|++++.+|++ ++.+|++++++.++++. .++|++++| ||||.++
T Consensus 87 ~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~--~ptG~~~ 161 (359)
T 1svv_A 87 LRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCP---DGKLRVADIESALHENRSEHMVIPKLVYISNT--TEVGTQY 161 (359)
T ss_dssp CCTTEEEEEETTSHHHHSSTTHHHHTTCCEEEECCT---TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS--CTTSCCC
T ss_pred hCCCCEEEEcccchHHHHHHHHHhcCCCeeEEEeCC---CCeecHHHHHHHHHHHHhccCCCceEEEEEcC--CCCceec
Confidence 9999999999999999988 488899999999974 57799999999998751 358888887 6899999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+.+++++|.++|+++|++||+||+|.++.+...+. .. ..+. +.. ...++..|.+|..+ ...+|+++++
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~---~~-~~~~-~~~-----~~d~~~~s~~K~g~--~~~~g~l~~~ 229 (359)
T 1svv_A 162 TKQELEDISASCKEHGLYLFLDGARLASALSSPVN---DL-TLAD-IAR-----LTDMFYIGATKAGG--MFGEALIILN 229 (359)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC---CC-CHHH-HHH-----HCSEEEEECTTTTC--SSCEEEEECS
T ss_pred CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc---ch-hhhh-hhh-----cCCEEEEecccCCC--CCceEEEEEc
Confidence 99999999999999999999999993332222111 00 0111 001 12467888999643 3557999988
Q ss_pred cHHHHHHHHh
Q 043334 845 HPQLVDAFSS 854 (903)
Q Consensus 845 ~~~li~~l~~ 854 (903)
++ +++.+..
T Consensus 230 ~~-~~~~~~~ 238 (359)
T 1svv_A 230 DA-LKPNARH 238 (359)
T ss_dssp GG-GCTTHHH
T ss_pred cc-HHHHHHH
Confidence 76 7666654
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-21 Score=215.32 Aligned_cols=252 Identities=10% Similarity=0.053 Sum_probs=179.7
Q ss_pred CCCeEEccCCCC-CCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQS-FLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~p-~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
|.+.+++..+++ .+++++.+.+++.+.+..+.. .+|..+..+.+++.+++++|.+ + +|++|+|++ +.
T Consensus 45 g~~~i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~---~-~i~~~sG~~-a~ 119 (401)
T 2bwn_A 45 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKE---A-ALVFSSAYN-AN 119 (401)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCS---E-EEEESCHHH-HH
T ss_pred CCcEEEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCC---c-EEEECCcHH-HH
Confidence 456788887765 455667899999988876321 2344455566677777777752 3 799999988 55
Q ss_pred HHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh----cCCCcEEEEECCCCCC
Q 043334 686 NKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE----TVKKPWVYISGPTINP 759 (903)
Q Consensus 686 ~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~----~~~~~~vil~~P~~NP 759 (903)
..++..++ .+||.|+++.|+|+.+...++..|++++.++.+ |++.+++.++ +++ ++|++++|+ ||
T Consensus 120 ~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-------d~~~le~~l~~~~~~~~-~~v~~~~~~-np 190 (401)
T 2bwn_A 120 DATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAP-KLIAFESVY-SM 190 (401)
T ss_dssp HHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSC-EEEEEESBC-TT
T ss_pred HHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCCeEEEEcCC-------CHHHHHHHHHhhccCCc-eEEEEecCc-CC
Confidence 55555543 589999999999999999999999999999873 5788888876 344 589999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++|++||+||+|+...|+.... ......+-. ...+++++||||++|++| |
T Consensus 191 tG~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~------~~~~~~~~~---~~~~i~~~s~sK~~~~~G---G 255 (401)
T 2bwn_A 191 DGDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGA------GVAERDGLM---HRIDIFNGTLAKAYGVFG---G 255 (401)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC------CHHHHHTCG---GGCSEEEEESSSTTCSCC---E
T ss_pred CCCcCC---HHHHHHHHHHcCCEEEEeccccccccCCCCc------eeeeccCcc---ccCcEEEeechhhccCCC---C
Confidence 999999 7899999999999999999998666654331 111111110 124799999999999888 9
Q ss_pred EEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 840 FLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
|++++++ +++.+..... ..+.+...|.++..+++.... ..+.++++.++++++.+
T Consensus 256 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~------~~~~~~~~~~~~~~~~l 314 (401)
T 2bwn_A 256 YIAASAR-MVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT------AEGQKLRDAQQMHAKVL 314 (401)
T ss_dssp EEEECHH-HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS------HHHHHHHHHHHHHHHHH
T ss_pred EEecCHH-HHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHHHH
Confidence 9999876 8888775432 233455778777777742111 11244455555555544
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=223.30 Aligned_cols=267 Identities=9% Similarity=0.047 Sum_probs=187.7
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccCC---CCCchHHHHHHHHHHHhhc-CCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQNM---SESEIDVTPSIQQYIKSNF-GFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~~---~~G~~~lr~ala~~l~~~~-G~~~~pe~~I~vt~Gs~~a 684 (903)
..+...+|++.|.+ +++ +++.+.+++.+.+..+.. .++..+....+++.+++++ | + .++ +|++|+|++++
T Consensus 38 ~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-~~~-~v~~~~g~~~a 114 (426)
T 1sff_A 38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-D-FAK-KTLLVTTGSEA 114 (426)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC-S-SCE-EEEEESSHHHH
T ss_pred CCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc-c-ccc-EEEEeCchHHH
Confidence 35667899987764 333 678899999888765322 1233344455555566655 4 2 224 89999999999
Q ss_pred HHHHHH---HhccCCCeEEEcCCCcHHHH-HHHHHcCCE-------------EEEecCCC---CCCcccCHHHHHHHhhc
Q 043334 685 FNKLVL---CCILEGGTLCFPAGSNGNYV-SAARFLKAN-------------IVNIPTES---EVGFKMTEKTLVTILET 744 (903)
Q Consensus 685 l~~ll~---~l~~pGD~Vlv~~P~y~~~~-~~~~~~G~~-------------vv~v~~~~---~~~f~ld~~~L~~~l~~ 744 (903)
+..++. .++++| .|++++|+|..+. ..+...|.+ ++.++++. ..++.+|+++|++.++.
T Consensus 115 ~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~ 193 (426)
T 1sff_A 115 VENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKN 193 (426)
T ss_dssp HHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHh
Confidence 999988 677776 8999999997654 456666653 77777753 12355789999998863
Q ss_pred C---CCcEEEEECCC-CCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC
Q 043334 745 V---KKPWVYISGPT-INPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819 (903)
Q Consensus 745 ~---~~~~vil~~P~-~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~ 819 (903)
. .+..+++++|+ +| || .++|.+++++|.++|+++|++||+||+|.++.+.+... . +...+
T Consensus 194 ~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~---~----~~~~~------- 258 (426)
T 1sff_A 194 DAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF---A----MEQMG------- 258 (426)
T ss_dssp TCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGGTT-------
T ss_pred ccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchh---h----hhhcC-------
Confidence 1 12245666665 57 99 88999999999999999999999999999776655321 1 11111
Q ss_pred ceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Q 043334 820 NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESR 897 (903)
Q Consensus 820 ~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~R 897 (903)
..+.+.||||.++. |+|+||++++++ +++.+.... ...+.+.+.|.++.++|+.-.. +.+.+++.++++.++++
T Consensus 259 ~~~di~s~sK~~~~-GlriG~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~ 334 (426)
T 1sff_A 259 VAPDLTTFAKSIAG-GFPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDG 334 (426)
T ss_dssp SCCSEEEECGGGGT-SSCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcccccC-CCceEEEEEcHH-HHhhhccCCcCcCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHH
Confidence 12234599999996 999999999987 888776432 3667889999999977742111 23567777888888777
Q ss_pred HHHH
Q 043334 898 SKRL 901 (903)
Q Consensus 898 r~~l 901 (903)
.+.+
T Consensus 335 l~~~ 338 (426)
T 1sff_A 335 LLAI 338 (426)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=218.96 Aligned_cols=255 Identities=14% Similarity=0.113 Sum_probs=184.4
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccC---CC--CCch---HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQN---MS--ESEI---DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~---~~--~G~~---~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
++.++|+.+.+. +.|+.+.+++.+.+.... .. ..++ +..+.+++.+++++|.+.+ +|++|+|+++++.
T Consensus 15 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~a~~ 90 (390)
T 1elu_A 15 ANKTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN---TITITDNVTTGCD 90 (390)
T ss_dssp TTSEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG---GEEEESSHHHHHH
T ss_pred CCeEEecCCccC-CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHcCCCHH---HEEEeCChHHHHH
Confidence 357899988743 567789999888775421 11 0122 3456677777777786543 8999999999999
Q ss_pred HHHHHh-ccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 687 KLVLCC-ILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 687 ~ll~~l-~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
.++.++ +++||+|+++.|+|..+... ++..|++++.++++.++++.+|++.+++.+++++ ++|++++|+ ||||
T Consensus 91 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~-~~v~~~~~~-nptG 168 (390)
T 1elu_A 91 IVLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT-RLVILSHLL-WNTG 168 (390)
T ss_dssp HHHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE-EEEEEESBC-TTTC
T ss_pred HHHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCc-eEEEEeccc-cCCc
Confidence 999999 89999999999999997654 5678999999998643567899999999988665 589999998 9999
Q ss_pred cCCCHHHHHHHHHHHH----hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 762 LLYSNKEIENILTVCA----KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~----k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
.+++ +++|.++|+ ++|++||+||+|+. .... .+ +... +.+++++|+||.+ ++|.+
T Consensus 169 ~~~~---~~~i~~l~~~~~~~~~~~li~Dea~~~---g~~~---~~-------~~~~----~~d~~~~s~~K~~-~~~~g 227 (390)
T 1elu_A 169 QVLP---LAEIMAVCRRHQGNYPVRVLVDGAQSA---GSLP---LD-------FSRL----EVDYYAFTGHKWF-AGPAG 227 (390)
T ss_dssp CBCC---HHHHHHHHHHCCSSSCCEEEEECTTTB---TTBC---CC-------TTTS----CCSEEEEESSSTT-CCCTT
T ss_pred eecC---HHHHHHHHhhhhhhcCcEEEEEccccc---CCcC---CC-------hhhc----CCCEEEccccccc-cCCCc
Confidence 9999 788889999 99999999999962 2111 11 1111 3678999999933 35677
Q ss_pred eeEEEeCcHHHHHHHHhCC------------------------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAFSSFP------------------------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRN 893 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~~------------------------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~ 893 (903)
+||++++++ +++.+.... ....++...|.++..++..-.. ..+++++++.
T Consensus 228 ~G~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~-----~~~~~~~~~~ 301 (390)
T 1elu_A 228 VGGLYIHGD-CLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQR-----QGTAEERYQA 301 (390)
T ss_dssp CEEEEECTT-TGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHH-----HCCHHHHHHH
T ss_pred eEEEEECHH-hHhhcCCccccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHH-----cCCHHHHHHH
Confidence 999999987 777665421 1234566777766666631111 1135556666
Q ss_pred HHHHHHHHh
Q 043334 894 LESRSKRLK 902 (903)
Q Consensus 894 y~~Rr~~l~ 902 (903)
++++++.+.
T Consensus 302 ~~~~~~~l~ 310 (390)
T 1elu_A 302 ICQRSEFLW 310 (390)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=217.72 Aligned_cols=255 Identities=9% Similarity=0.042 Sum_probs=186.2
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..+...+|++.|. +.++ .++.+.+++.+.+.++. ......+..+++++++++.+|.+ +|++|+|+++++.
T Consensus 36 ~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~-----~v~~~~gg~~a~~ 110 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFAD-----RVFFCNSGAEANE 110 (406)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCS-----EEEEESSHHHHHH
T ss_pred CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCC-----eEEEeCcHHHHHH
Confidence 4567789998772 3333 57889999999886632 12223456888999999987642 7999999999999
Q ss_pred HHHHHhcc-------CC-CeEEEcCCCcHHHHHHHHHcCC-------------EEEEecCCCCCCcccCHHHHHHHhhcC
Q 043334 687 KLVLCCIL-------EG-GTLCFPAGSNGNYVSAARFLKA-------------NIVNIPTESEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 687 ~ll~~l~~-------pG-D~Vlv~~P~y~~~~~~~~~~G~-------------~vv~v~~~~~~~f~ld~~~L~~~l~~~ 745 (903)
.++.+++. +| |.|++++|+|..+...+...+. ++..+|. .|+++|+++++++
T Consensus 111 ~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~ 183 (406)
T 4adb_A 111 AALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-------NDINSASALIDDS 183 (406)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-------TCHHHHHTTCSTT
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-------CcHHHHHHHhcCC
Confidence 99988875 66 9999999999988666555443 3334433 4799999998765
Q ss_pred CCcEEEEECCCCCCcccCC--CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 746 KKPWVYISGPTINPTGLLY--SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~--s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+ ++|+++ |+ ||||.++ +.+++++|.++|+++|++||+||+|.++.+.+... .....+.. ..++
T Consensus 184 ~-~~v~~~-p~-np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-------~~~~~~~~----~d~~- 248 (406)
T 4adb_A 184 T-CAVIVE-PI-QGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY-------AYMHYGVT----PDLL- 248 (406)
T ss_dssp E-EEEEEC-SE-ETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-------HHHHHTCC----CSEE-
T ss_pred e-EEEEEe-CC-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhH-------HHHhcCCC----CCEE-
Confidence 5 466666 98 9999999 99999999999999999999999998776666542 11222221 1333
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
||||.++ +|+|+||++++++ +++.+..... ..+.+.+.|.++..+|+... .+.+.+++.+.++.+.++.+
T Consensus 249 --t~sK~~~-~G~r~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~--~~~~~~~~~~~~~~l~~~l~ 320 (406)
T 4adb_A 249 --TTAKALG-GGFPVGALLATEE-CARVMTVGTHGTTYGGNPLASAVAGKVLELIN--TPEMLNGVKQRHDWFVERLN 320 (406)
T ss_dssp --EECGGGG-TTSCCEEEEECHH-HHHTCCTTSSCCSSTTCHHHHHHHHHHHHHHS--SHHHHHHHHHHHHHHHHHHH
T ss_pred --Eechhhc-CCCCeEEEEEcHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHH
Confidence 6799999 9999999999887 8888876542 67788999999998885211 12334445555555554443
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=9e-21 Score=212.81 Aligned_cols=231 Identities=9% Similarity=0.012 Sum_probs=172.7
Q ss_pred CCCCcHHHHHHHHHHHHccCC-C---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC------
Q 043334 626 FLPIPSLVKAAIFESFARQNM-S---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE------ 695 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~-~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p------ 695 (903)
..++++.+.+++.+.+..... . .+..++.+++++++++.+|.+.+ +|++|+|+++++..++.+++.+
T Consensus 39 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~i~~~~ggt~a~~~~~~~~~~~~~~~~~ 115 (397)
T 3f9t_A 39 CSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAVALLGSLLNNKDA---YGHIVSGGTEANLMALRCIKNIWREKRR 115 (397)
T ss_dssp CCCCCTHHHHHHHHHTTCCTTSGGGBHHHHHHHHHHHHHHHHHTTCTTC---EEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhhcCCCcccChhHHHHHHHHHHHHHHHhCCCCC---CEEEecCcHHHHHHHHHHHHHHHHhhhh
Confidence 344567788888887754221 1 14467788899999999998644 8999999999999999999877
Q ss_pred -------CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHH
Q 043334 696 -------GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 696 -------GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~e 767 (903)
||+|+++.|+|+.+...++..|++++.+|++. ++.+|++++++.+++ ++ +++++++|+ ||||.+.+
T Consensus 116 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~-- 189 (397)
T 3f9t_A 116 KGLSKNEHPKIIVPITAHFSFEKGREMMDLEYIYAPIKE--DYTIDEKFVKDAVEDYDV-DGIIGIAGT-TELGTIDN-- 189 (397)
T ss_dssp TTCCCCSSCEEEEETTCCTHHHHHHHHHTCEEEEECBCT--TSSBCHHHHHHHHHHSCC-CEEEEEBSC-TTTCCBCC--
T ss_pred hcccCCCCeEEEECCcchhHHHHHHHHcCceeEEEeeCC--CCcCCHHHHHHHHhhcCC-eEEEEECCC-CCCCCCCC--
Confidence 99999999999999999999999999999974 577999999999988 66 599999998 99999988
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccC--CCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFN--YEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~--~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
+++|.++|+++|++||+||+|+.+.++ +...+.......+. +.. +..+++.|++|.++ +|.|+||+++++
T Consensus 190 -l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~s~~K~~~-~~~~~g~~~~~~ 261 (397)
T 3f9t_A 190 -IEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFD-FSL-----GVDSITIDPHKMGH-CPIPSGGILFKD 261 (397)
T ss_dssp -HHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCS-GGG-----TCSEEECCTTTTTC-CCSSCEEEEESS
T ss_pred -HHHHHHHHHHhCCeEEEEccccchhhhhccccccccccccccc-ccc-----cCCeEEEccccccC-CCCCceEEEEeC
Confidence 888999999999999999999765432 21000000000000 011 14688999999764 788999999987
Q ss_pred HHHHHHHHhCCCC-------------CCCcHHHHHHHHHHH
Q 043334 846 PQLVDAFSSFPGL-------------SKPHSTVRYAIKKLL 873 (903)
Q Consensus 846 ~~li~~l~~~~~~-------------~~~s~~~Q~aa~~~L 873 (903)
+.+++.+...... .+.+...|.++...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 302 (397)
T 3f9t_A 262 IGYKRYLDVDAPYLTETRQATILGTRVGFGGACTYAVLRYL 302 (397)
T ss_dssp GGGGGGTCEECTTSSSSEECSSCSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCccccCCCccccccccccchHHHHHHHHHHH
Confidence 7565555332221 122456677776666
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=219.80 Aligned_cols=242 Identities=9% Similarity=0.050 Sum_probs=174.6
Q ss_pred CCCCCeEEccCCCC--CCCC--cHHHHHHHHHHHHccC---CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVDQS--FLPI--PSLVKAAIFESFARQN---MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~~--p~~v~~al~~al~~y~---~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
..+...+|++.|.+ +++. ++.+.+++.+.+..+. ...+..+.+.++++.+++.+|.+. ++ +|++|+|++++
T Consensus 39 ~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~-~~-~v~~~~gg~ea 116 (419)
T 2eo5_A 39 VDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNF-QK-KVFFSNSGTEA 116 (419)
T ss_dssp TTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSS-CE-EEEEESSHHHH
T ss_pred CCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCc-CC-EEEEeCchHHH
Confidence 35667899988773 4443 7999999999886542 123456678889999999998763 34 89999999999
Q ss_pred HHHHHHHhcc-CCCeEEEcCCCcHHHHHH-HHHcC-------------CEEEEecCCCCCCcc----------------c
Q 043334 685 FNKLVLCCIL-EGGTLCFPAGSNGNYVSA-ARFLK-------------ANIVNIPTESEVGFK----------------M 733 (903)
Q Consensus 685 l~~ll~~l~~-pGD~Vlv~~P~y~~~~~~-~~~~G-------------~~vv~v~~~~~~~f~----------------l 733 (903)
+..++..+.. +||.|++++|+|.++... ....| .+++.+|.+. .|. +
T Consensus 117 ~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~g~~~~~~~~~~~~~ 194 (419)
T 2eo5_A 117 IEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPN--PYRNPWHINGYENPSELVNR 194 (419)
T ss_dssp HHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCC--SSSCTTCCCTTTCHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCc--cccccccccccccchhhHHH
Confidence 9998887654 489999999999754433 22222 3577777743 232 3
Q ss_pred CHHHHH-HHhhcC---CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 734 TEKTLV-TILETV---KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 734 d~~~L~-~~l~~~---~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|+++|+ +.+++. .+..+++++|++||||. +.+.+++++|.++|+++|++||+||+|.++.+.+... . .
T Consensus 195 ~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~---~----~ 267 (419)
T 2eo5_A 195 VIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLF---A----I 267 (419)
T ss_dssp HHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----G
T ss_pred HHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchh---h----H
Confidence 688998 888741 12357788888578996 7789999999999999999999999998776655421 1 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC-CCCCCCcHHHHHHHHHHHh
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF-PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~-~~~~~~s~~~Q~aa~~~L~ 874 (903)
......+ ++ .||||.++ +| +|+||++++++ ++ .+... ..+.+.+.++|.++.++|+
T Consensus 268 ~~~~~~~----d~---~t~sK~~~-~G~~riG~~~~~~~-~~-~~~~~~~~t~~~n~~~~~aa~aal~ 325 (419)
T 2eo5_A 268 ENFNTVP----DV---ITLAKALG-GGIMPIGATIFRKD-LD-FKPGMHSNTFGGNALACAIGSKVID 325 (419)
T ss_dssp GGGTCCC----SE---EEECGGGG-TTTSCCEEEEEEGG-GC-CC------CCCCCHHHHHHHHHHHH
T ss_pred HhcCCCC----CE---EEeccccc-CCccceEEEEEchH-hh-cCCcccCCCCCCCHHHHHHHHHHHH
Confidence 1122221 23 28999998 59 99999999887 76 66212 2367789999999999994
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=214.28 Aligned_cols=234 Identities=9% Similarity=0.050 Sum_probs=171.2
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccC-CCCCc-hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQN-MSESE-IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~-~~~G~-~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..+...+|++.|.+ .++ +++.+.+++.+.+.++. ...++ ......+++.+++++|.+ + +|++|+|+++++.
T Consensus 25 ~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~---~-~v~~~~g~t~a~~ 100 (375)
T 2eh6_A 25 EEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTE---G-KVFFANSGTESVE 100 (375)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSC---E-EEEEESSHHHHHH
T ss_pred CCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCC---C-eEEEeCchHHHHH
Confidence 35667899998874 566 78899999998886542 11122 233456677777777872 3 8999999999999
Q ss_pred HHHHH---hc---cCC-CeEEEcCCCcHHHHHHHHHcCCE-------------EEEecCCCCCCcccCHHHHHHHhhcCC
Q 043334 687 KLVLC---CI---LEG-GTLCFPAGSNGNYVSAARFLKAN-------------IVNIPTESEVGFKMTEKTLVTILETVK 746 (903)
Q Consensus 687 ~ll~~---l~---~pG-D~Vlv~~P~y~~~~~~~~~~G~~-------------vv~v~~~~~~~f~ld~~~L~~~l~~~~ 746 (903)
.++.+ ++ +|| |+|++++|+|..+...+...+.. +..++. +|++++++++++++
T Consensus 101 ~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 173 (375)
T 2eh6_A 101 AAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-------NDIDSVYKLLDEET 173 (375)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-------chHHHHHHHhcCCe
Confidence 98865 35 788 99999999998877666544332 222322 58999999987655
Q ss_pred CcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc
Q 043334 747 KPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG 825 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~ 825 (903)
++|++++|+ ||||.+ .+.+++++|.++|+++|++||+||+|.++.+.+... + +..++..+ .++
T Consensus 174 -~~v~~~~~~-~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~---~----~~~~~~~~----d~~--- 237 (375)
T 2eh6_A 174 -AGIIIEVIQ-GEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFY---A----YQHFNLKP----DVI--- 237 (375)
T ss_dssp -EEEEECSEE-TTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGGGTCCC----SEE---
T ss_pred -EEEEEeCcc-CCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcch---h----hhhcCCCC----CEE---
Confidence 588888886 999999 568999999999999999999999998754443221 1 12222111 233
Q ss_pred cCchhcccccceeeEEEeCcHHHHHHHHhC--CCCCCCcHHHHHHHHHHHh
Q 043334 826 GLSLKMLTGALKFGFLVLNHPQLVDAFSSF--PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 826 S~SK~~g~~GlRiG~lv~~~~~li~~l~~~--~~~~~~s~~~Q~aa~~~L~ 874 (903)
||||.++ +|+|+||++++++ +++.+... ....+.+.+.|.++..+|+
T Consensus 238 s~SK~~~-~g~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 286 (375)
T 2eh6_A 238 ALAKGLG-GGVPIGAILAREE-VAQSFTPGSHGSTFGGNPLACRAGTVVVD 286 (375)
T ss_dssp EECGGGG-TTSCCEEEEEEHH-HHTTCCTTSCCCSSTTCHHHHHHHHHHHH
T ss_pred EEccccc-CCCCeEEEEEcHH-HHhhhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8999998 7999999999886 88877662 2356778899998888884
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.9e-21 Score=215.60 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=176.2
Q ss_pred CCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC-CC-CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 613 PNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM-SE-SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 613 ~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~-~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.+...+|++.+. ++++ +++.+.+++.+.+..+.. .. ...+.++++++.+++++|. + ++++|+|+++++..
T Consensus 38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~-~v~~~~gg~~a~~~ 112 (397)
T 2ord_A 38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFG----G-KVFFANTGTEANEA 112 (397)
T ss_dssp TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTS----C-EEEEESSHHHHHHH
T ss_pred CCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCC----C-eEEEeCCHHHHHHH
Confidence 456788998762 3333 578899999998876432 11 2346788899999998872 3 89999999999999
Q ss_pred HHHHhcc------C-CCeEEEcCCCcHH-HHHHHHHcCCE------------EEEecCCCCCCcccCHHHHHHHhhcCCC
Q 043334 688 LVLCCIL------E-GGTLCFPAGSNGN-YVSAARFLKAN------------IVNIPTESEVGFKMTEKTLVTILETVKK 747 (903)
Q Consensus 688 ll~~l~~------p-GD~Vlv~~P~y~~-~~~~~~~~G~~------------vv~v~~~~~~~f~ld~~~L~~~l~~~~~ 747 (903)
++.++.. + ++.|++++|+|.. +...++..|.+ ++.++. .|++++++.+++++
T Consensus 113 al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~l~~~l~~~~- 184 (397)
T 2ord_A 113 AIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEF-------NNVEDLRRKMSEDV- 184 (397)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECT-------TCHHHHHHHCCTTE-
T ss_pred HHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecC-------CCHHHHHHHhhcCe-
Confidence 9988764 5 4789999999855 44467777876 677765 27999999988655
Q ss_pred cEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEcc
Q 043334 748 PWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGG 826 (903)
Q Consensus 748 ~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S 826 (903)
++|++++|+ ||||. +++.+++++|.++|+++|++||+||+|.++.+.+... .+..++..+ .++ |
T Consensus 185 ~~v~~~~~~-nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~-------~~~~~~~~~----d~~---s 249 (397)
T 2ord_A 185 CAVFLEPIQ-GESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLF-------AYQKYGVVP----DVL---T 249 (397)
T ss_dssp EEEEECSEE-CTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-------HHHHHTCCC----SEE---E
T ss_pred EEEEEeccc-CCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccch-------hhhhhCCCC----Cee---e
Confidence 589999997 99999 9999999999999999999999999998776655431 122222222 222 8
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
|||.++ +|+|+||++++++ ++ .+.... ...+.+.+.|.++.++|+
T Consensus 250 ~sK~~~-~G~r~G~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~a~~~~l~ 296 (397)
T 2ord_A 250 TAKGLG-GGVPIGAVIVNER-AN-VLEPGDHGTTFGGNPLACRAGVTVIK 296 (397)
T ss_dssp ECGGGG-TTSCCEEEEECST-TC-CCCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred eccccC-CCcCeEEEEEchH-hc-ccCCCCcCCCCCCCHHHHHHHHHHHH
Confidence 899998 8999999999987 66 554322 256778999999998884
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-21 Score=213.38 Aligned_cols=245 Identities=13% Similarity=0.046 Sum_probs=177.9
Q ss_pred EccCCCCCCCCcHHHHHHHHHHHHccC--CC--C----CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 619 HMDVDQSFLPIPSLVKAAIFESFARQN--MS--E----SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 619 dLs~g~p~~~~p~~v~~al~~al~~y~--~~--~----G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.|+.+.+. ++|+.+++++.+.+.... +. + +..+..+.+++.+++++|.+. + +|++|+|+++++..++.
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~--~-~v~~~~g~t~a~~~~~~ 78 (382)
T 4eb5_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG--G-TVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCTT--E-EEEEESSHHHHHHHHHH
T ss_pred eeccCCCC-CCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCC--C-eEEEcCchHHHHHHHHH
Confidence 45555544 678899999999886521 11 1 123466788888888888753 3 89999999999999999
Q ss_pred Hhc----cCCCeEEEcCCCcHHHHHHHHH---cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 691 CCI----LEGGTLCFPAGSNGNYVSAARF---LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~l~----~pGD~Vlv~~P~y~~~~~~~~~---~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
++. ++||+|++++|+|+.+...+.. .|++++.+++++ ++.+|++++++.+++++ ++|++++|+ ||||.+
T Consensus 79 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~~~~-nptG~~ 154 (382)
T 4eb5_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDT-ILVSVQHAN-NEIGTI 154 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCT--TSCBCHHHHHHHCCTTE-EEEECCSBC-TTTCBB
T ss_pred HHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCC--CCccCHHHHHHHhcCCC-eEEEEeccC-CCcccc
Confidence 998 8999999999999998777754 699999999974 46799999999998765 588899997 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
++ +++|.++|+++|++ |+|++|+ +.... .+ +... +.+++++|+||.+|.+| +||+++
T Consensus 155 ~~---l~~i~~l~~~~~~~-i~D~a~~---~g~~~---~~----~~~~-------~~di~~~s~sK~~g~~g--~G~~~~ 211 (382)
T 4eb5_A 155 QP---VEEISEVLAGKAAL-HIDATAS---VGQIE---VD----VEKI-------GADMLTISSNDIYGPKG--VGALWI 211 (382)
T ss_dssp CC---HHHHHHHHTTSSEE-EEECTTT---BTTBC---CC----HHHH-------TCSEEEEETGGGTCCSS--CEEEEE
T ss_pred CC---HHHHHHHHHHCCCE-EEEcchh---cCCcc---cC----cccc-------CCCEEEeehHHhcCCCc--eEEEEE
Confidence 99 78899999999999 9999996 22211 11 1111 25789999999988667 799999
Q ss_pred CcHHH-HHHHHh------CCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 844 NHPQL-VDAFSS------FPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 844 ~~~~l-i~~l~~------~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ . +..+.. ......++...+.++..++. . ++++++++++.++++++.+.
T Consensus 212 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~-----~~~~~~~~~~~~~~~~~~l~ 269 (382)
T 4eb5_A 212 RKE-AKLQPVILGGGQENGLRSGSENVPSIVGFGKAAE--I-----TAMEWREEAERLRRLRDRII 269 (382)
T ss_dssp ETT-CCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cccCceecCCCccccccCCCccHHHHHHHHHHHH--H-----HHHhHHHHHHHHHHHHHHHH
Confidence 876 2 111100 01133455666666666663 1 12345666666777666653
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-20 Score=214.21 Aligned_cols=243 Identities=12% Similarity=0.028 Sum_probs=170.3
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC---CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN---MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~---~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..+...+|++.| .+.++ .++.+.+++.+.+.+.. ...+..+.+.++++++++.++.+.+ +|++|+|+++++
T Consensus 26 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~v~~~~gg~ea~ 102 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTF---RFWAVSGGSEAT 102 (430)
T ss_dssp TTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTC---EEEEESSHHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCcHHHHH
Confidence 356778999876 45555 38899999998876532 2356778899999999998886554 899999999999
Q ss_pred HHHHHHhcc--------CCCeEEEcCCCcHHHHHHHHHcCCE---------------EEEecCCCC-CCcccCHHHHHHH
Q 043334 686 NKLVLCCIL--------EGGTLCFPAGSNGNYVSAARFLKAN---------------IVNIPTESE-VGFKMTEKTLVTI 741 (903)
Q Consensus 686 ~~ll~~l~~--------pGD~Vlv~~P~y~~~~~~~~~~G~~---------------vv~v~~~~~-~~f~ld~~~L~~~ 741 (903)
..++..++. +||.|++.+|+|..+...+...+.. +..++.... .....|+++|++.
T Consensus 103 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~ 182 (430)
T 3i4j_A 103 ESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRAL 182 (430)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHH
Confidence 999988873 4789999999999887665544432 222332110 0011356888888
Q ss_pred hhc---CCCcEEEEECCCCC-Cccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh-ccCC
Q 043334 742 LET---VKKPWVYISGPTIN-PTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL-YSST 815 (903)
Q Consensus 742 l~~---~~~~~vil~~P~~N-PTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l-~~~~ 815 (903)
++. .+ ..+++++|++| |+|. +++.+++++|.++|++||++||+||+|.++.+.+... . .... ...+
T Consensus 183 l~~~~~~~-~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~---~----~~~~~~~~~ 254 (430)
T 3i4j_A 183 LEREGPET-VAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPL---A----LSRWSGVTP 254 (430)
T ss_dssp HHHHCGGG-EEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGGTTTCCC
T ss_pred HHhcCCCC-EEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchh---h----hhhhcCCCC
Confidence 873 33 36777788757 8887 6788899999999999999999999998876655431 1 1222 1111
Q ss_pred CCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC-----C-CCCCCcHHHHHHHHHHHh
Q 043334 816 NSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF-----P-GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 816 ~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~-----~-~~~~~s~~~Q~aa~~~L~ 874 (903)
. +.+|||+++ .| ||+||++++++ +++.+.+. . ..++.++++|.++.++|+
T Consensus 255 ----d---i~t~sK~l~-~G~~r~G~~~~~~~-i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 311 (430)
T 3i4j_A 255 ----D---IAVLGKGLA-AGYAPLAGLLAAPQ-VYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLD 311 (430)
T ss_dssp ----S---EEEECGGGT-TTSSCCEEEEECHH-HHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHH
T ss_pred ----c---EEEEccccc-CCccccEEEEECHH-HHHHHhccCCcccccCCCCCCHHHHHHHHHHHH
Confidence 2 336999998 59 99999999887 99999863 2 367889999999999995
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1e-20 Score=214.39 Aligned_cols=256 Identities=11% Similarity=0.087 Sum_probs=184.5
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccC--C--CCC----chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQN--M--SES----EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~--~~G----~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
+.+.|+.+.+. ++|+.+.+++.+.+..+. + .+. ..+..+.+++.+++++|.+.+ +|++|+|+++++..
T Consensus 26 ~~~~ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---~v~~~~g~t~al~~ 101 (406)
T 3cai_A 26 GWVHFDAPAGM-LIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLVNADPG---GVVLGADRAVLLSL 101 (406)
T ss_dssp SCEECBGGGCC-CCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHHTCCGG---GEEEESCHHHHHHH
T ss_pred CeEEEeCCCcC-CCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCC---eEEEeCChHHHHHH
Confidence 47899988877 678889999988886532 1 111 234567788888888887533 89999999999999
Q ss_pred HHHHh---ccCCCeEEEcCCCcHHHHHHHHH----cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc
Q 043334 688 LVLCC---ILEGGTLCFPAGSNGNYVSAARF----LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT 760 (903)
Q Consensus 688 ll~~l---~~pGD~Vlv~~P~y~~~~~~~~~----~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT 760 (903)
++.++ +++||+|+++.|+|+.+...+.. .|++++.+++++ +++.+|+++|++.+++++ ++|++++|+ |||
T Consensus 102 ~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~-~~~~~d~~~l~~~l~~~~-~~v~~~~~~-npt 178 (406)
T 3cai_A 102 LAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDI-ETGELPTWQWESLISKST-RLVAVNSAS-GTL 178 (406)
T ss_dssp HHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCT-TTCCCCGGGHHHHCCTTE-EEEEEESBC-TTT
T ss_pred HHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCc-ccCCcCHHHHHHHhCCCc-eEEEEeCCc-CCc
Confidence 98887 78999999999999886555433 799999999874 345789999999998765 589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee-
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG- 839 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG- 839 (903)
|.+++ +++|.++|+++|++||+|++|+. +... ++ +..+ +..+++.|+||.+| ++ +|
T Consensus 179 G~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~---~~----~~~~-------~~d~~~~s~~K~~g-~~--~G~ 235 (406)
T 3cai_A 179 GGVTD---LRAMTKLVHDVGALVVVDHSAAA---PYRL---LD----IRET-------DADVVTVNAHAWGG-PP--IGA 235 (406)
T ss_dssp CBBCC---CHHHHHHHHHTTCEEEEECTTTT---TTCC---CC----HHHH-------CCSEEEEEGGGGTS-CS--CEE
T ss_pred cccCC---HHHHHHHHHHcCCEEEEEccccc---CCCC---CC----chhc-------CCCEEEeehhhhcC-CC--cCe
Confidence 99998 78899999999999999999962 1111 11 1111 25789999999876 54 99
Q ss_pred EEEeCcHHHHHHHHhCCC-----------CCCCcHHHHHHHHHHHhcccccc--------hhHHHHHHHHHHHHHHHHHH
Q 043334 840 FLVLNHPQLVDAFSSFPG-----------LSKPHSTVRYAIKKLLGLRERKA--------RDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~~-----------~~~~s~~~Q~aa~~~L~~~~~~~--------~~~~~~l~~~r~~y~~Rr~~ 900 (903)
|++++++ +++.+..... ...++...+.++..+++...... ..+..+++++++.++++++.
T Consensus 236 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (406)
T 3cai_A 236 MVFRDPS-VMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDY 314 (406)
T ss_dssp EEESCHH-HHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEehH-HHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 9999886 8877765431 23345555555555553111000 11223566666667666666
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 315 l~ 316 (406)
T 3cai_A 315 LM 316 (406)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.8e-21 Score=214.96 Aligned_cols=221 Identities=11% Similarity=0.005 Sum_probs=170.7
Q ss_pred CCC-CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 613 PNS-GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 613 ~~~-~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
.|. +++|++.+.++.++++.+++++. .+ .+...+.+.+++.+++.+|.+ .++ ++++++|+++++..++.+
T Consensus 25 ~g~~~v~~~~~~~~~~~~~~~v~~a~~----~~---~~~~~~~~~~~~~~a~~~g~~-~~~-~~~~~~ggt~a~~~~~~~ 95 (374)
T 2aeu_A 25 KGRDALYDLSGLSGGFLIDEKDKALLN----TY---IGSSYFAEKVNEYGLKHLGGD-END-KCVGFNRTSSAILATILA 95 (374)
T ss_dssp TCGGGCEECSSCCCCCCCCHHHHHHHT----ST---THHHHHHHHHHHHHHHHHTCC-TTE-EEEEESSHHHHHHHHHHH
T ss_pred cCccceeeecccCCCCCCCHHHHHHHH----Hh---cCchHHHHHHHHHHHHHhCCC-Ccc-eEEEEcChHHHHHHHHHh
Confidence 455 79999999999999999988875 22 123455678888888888875 234 799999999999999988
Q ss_pred hccCCCeEEEcCCCcHHHHH---HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcE-EEEECCCCCCcccCCCHH
Q 043334 692 CILEGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPW-VYISGPTINPTGLLYSNK 767 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~-vil~~P~~NPTG~v~s~e 767 (903)
+ |||+|+++.|+|+.+.. .++..|++++.+ . |++++++. ++++ ++ |++++|+ ||||. +..
T Consensus 96 ~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-~--------d~~~l~~~-~~~~-~~~v~~~~p~-nptG~--~~~ 159 (374)
T 2aeu_A 96 L--KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-D--------KVGEILNK-IDKD-TLVIITGSTM-DLKVI--ELE 159 (374)
T ss_dssp H--CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-S--------CHHHHHTT-CCTT-EEEEEECBCT-TSCBC--CHH
T ss_pred C--CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-C--------CHHHHHhc-CCCc-cEEEEEccCC-CCCCC--Ccc
Confidence 7 99999999997765332 678889999888 2 68889887 5555 58 8889998 99997 788
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
++++|.++|+++|++||+||+|+.+. .+.... . +... . +.+++++|+||.+ +|+|+||++++++
T Consensus 160 ~l~~i~~l~~~~~~~li~De~~~~~~-~~~~~~-~---~~~~-~-------~~di~~~S~sK~l--~g~~~G~~~~~~~- 223 (374)
T 2aeu_A 160 NFKKVINTAKNKEAIVFVDDASGARV-RLLFNQ-P---PALK-L-------GADLVVTSTDKLM--EGPRGGLLAGKKE- 223 (374)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTHHHH-HHHTTC-C---CHHH-H-------TCSEEEEETTSSS--SSCSCEEEEEEHH-
T ss_pred cHHHHHHHHHHcCCEEEEECCccccc-cccccc-C---Cccc-c-------CCcEEEecCcccc--cCcceEEEEECHH-
Confidence 99999999999999999999996542 110000 0 0111 1 2468999999985 5899999999886
Q ss_pred HHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 848 li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+++.+..... ..+++.+.|.++..+|.
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~a~~~al~ 252 (374)
T 2aeu_A 224 LVDKIYIEGTKFGLEAQPPLLAGIYRALK 252 (374)
T ss_dssp HHHHHHHHHHTTTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 8888876543 34578889999998885
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=210.16 Aligned_cols=202 Identities=12% Similarity=0.127 Sum_probs=153.0
Q ss_pred CCCCCCCC-c---HHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCC
Q 043334 622 VDQSFLPI-P---SLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEG 696 (903)
Q Consensus 622 ~g~p~~~~-p---~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pG 696 (903)
.++|++++ | +.+.+++.+.+.+....++..+..+.+++.+++++|.+ . .|++++| ++++..++.++ +++|
T Consensus 4 ~~~p~f~~~p~~~~~~~~a~~~~l~~~~~~~~~~~~~~~l~~~la~~~~~~-~---~i~~~sG-t~al~~~l~~l~~~~g 78 (388)
T 1b9h_A 4 RKAPEFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHHGAA-H---ALAVTNG-THALELALQVMGVGPG 78 (388)
T ss_dssp -CCCCCCCSSCCCHHHHHHHHHHHHTSCCBTTTCSHHHHHHHHHHHHTTCS-E---EEEESCH-HHHHHHHHHHTTCCTT
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHcCCeeecCCHHHHHHHHHHHHHhCCC-e---EEEeCCH-HHHHHHHHHHcCCCCc
Confidence 45677876 6 88999999988653111222222334444445555654 2 7999998 79999999999 8999
Q ss_pred CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHH
Q 043334 697 GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVC 776 (903)
Q Consensus 697 D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia 776 (903)
|+|+++.|+|+.+...++..|++++.+++++ ++|.+|++.+++.+++++ ++|+ |+ ||||.+.+ +++|.++|
T Consensus 79 d~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~i~~~~-~~v~---~~-n~tG~~~~---l~~i~~la 149 (388)
T 1b9h_A 79 TEVIVPAFTFISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRT-KVIM---PV-HMAGLMAD---MDALAKIS 149 (388)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTE-EEEC---CB-CGGGCCCC---HHHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCCCHHHHHHhcCcCc-eEEE---Ee-CCccCcCC---HHHHHHHH
Confidence 9999999999999999999999999999975 357899999999997654 3443 98 99999987 78889999
Q ss_pred HhCCcEEEEecCCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH--HHHHH
Q 043334 777 AKYGARVVIDTAFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL--VDAFS 853 (903)
Q Consensus 777 ~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l--i~~l~ 853 (903)
+++|++||+|++|+. ..+.+.. + ... .++.+.||||..+++|.|+||++++++.+ ++.+.
T Consensus 150 ~~~~~~li~D~a~~~g~~~~~~~---------~---~~~-----~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~ 212 (388)
T 1b9h_A 150 ADTGVPLLQDAAHAHGARWQGKR---------V---GEL-----DSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAF 212 (388)
T ss_dssp HHHTCCBCEECTTCTTCEETTEE---------G---GGS-----SSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHH
T ss_pred HHcCCEEEEecchhcCCccCCee---------c---ccc-----cceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHH
Confidence 999999999999974 3343221 1 111 26789999988878888999999987546 56664
Q ss_pred h
Q 043334 854 S 854 (903)
Q Consensus 854 ~ 854 (903)
.
T Consensus 213 ~ 213 (388)
T 1b9h_A 213 L 213 (388)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.8e-20 Score=207.21 Aligned_cols=200 Identities=12% Similarity=0.045 Sum_probs=155.6
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCC
Q 043334 625 SFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAG 704 (903)
Q Consensus 625 p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P 704 (903)
.+.++++.+.+++.+.+..+ ......+..+.+++++++.+|.+..++ +|++|+|+++++. ++..++++||+|+++.|
T Consensus 9 gp~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~~~~~-~v~~~~g~t~al~-~~~~~~~~gd~vi~~~~ 85 (384)
T 3zrp_A 9 GPTTIKEDVLVAGLENNVGF-TSKEFVEALAYSLKGLRYVMGASKNYQ-PLIIPGGGTSAME-SVTSLLKPNDKILVVSN 85 (384)
T ss_dssp SCSCCCHHHHHHTTCCSCCT-TSHHHHHHHHHHHHHHHHHHTCCTTSE-EEEEESCHHHHHH-HGGGGCCTTCEEEEECS
T ss_pred CCCCCCHHHHHHhhcccccc-ccHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEcCCcHHHHH-HHHhhcCCCCEEEEecC
Confidence 34567788887776543222 222345667888889999899876334 8999999999999 89999999999999999
Q ss_pred CcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcE
Q 043334 705 SNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 705 ~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~ 782 (903)
+|.. +...++..|++++.++++. ++.+|++++++.+++...++|++++|+ ||||.+++ +++|.++|+++|++
T Consensus 86 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~ 159 (384)
T 3zrp_A 86 GVFGDRWEQIFKRYPVNVKVLRPSP--GDYVKPGEVEEEVRKSEYKLVALTHVE-TSTGVREP---VKDVINKIRKYVEL 159 (384)
T ss_dssp SHHHHHHHHHHTTSSCEEEEECCST--TCCCCHHHHHHHHHHSCEEEEEEESEE-TTTTEECC---HHHHHHHHGGGEEE
T ss_pred CcchHHHHHHHHHcCCcEEEecCCC--CCCCCHHHHHHHHHhCCCcEEEEeCCC-CCCceECc---HHHHHHHHHhcCCE
Confidence 9965 6677788999999999975 456899999999987333699999997 99999999 78899999999999
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHH
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l 852 (903)
||+|++|+.... .. + +... +..+++.|+||.++ .+.++||++++++ +++.+
T Consensus 160 li~D~a~~~~~~---~~---~-------~~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~-~~~~~ 210 (384)
T 3zrp_A 160 IVVDGVSSVGAE---EV---K-------AEEW----NVDVYLTASQKALG-SAAGLGLLLLSPK-ALSIL 210 (384)
T ss_dssp EEEECTTTTTTS---CC---C-------TTTT----TCSEEEEETTSTTC-CCSSEEEEEECHH-HHHHH
T ss_pred EEEECcccccCc---cc---c-------cccc----CCCEEEecCccccc-CCCceEEEEECHH-HHHHh
Confidence 999999863211 10 0 1111 36789999999885 2344899999987 77776
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-21 Score=215.77 Aligned_cols=252 Identities=10% Similarity=0.028 Sum_probs=179.8
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHcc-CC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQ-NM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y-~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...+.|.|+.+.+. ++|+.+.+++.+.+.+. .. ..+..+..+.+++++++++|.+.+ +|++|+|++++
T Consensus 17 ~~~~~iyld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~---~v~~~~g~t~a 92 (400)
T 3vax_A 17 RGSHMTYLDAAATT-RVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPD---ELIFTSGATES 92 (400)
T ss_dssp -----CCCCCCCCS-SSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHTTCCGG---GEEEESCHHHH
T ss_pred ccCCcEEecCCCCC-CCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHcCCCCC---cEEEeCCHHHH
Confidence 34567888877766 67888999988887532 11 112345578899999999998643 89999999999
Q ss_pred HHHHHHHhc----cCCC-eEEEcCCCcHHHHHHHHH---cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 685 FNKLVLCCI----LEGG-TLCFPAGSNGNYVSAARF---LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 685 l~~ll~~l~----~pGD-~Vlv~~P~y~~~~~~~~~---~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+..++.+++ ++|| .|+++.++|+.+...+.. .|++++.++++. ++.+|++++++++++++ +++++++|+
T Consensus 93 l~~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~~~~ 169 (400)
T 3vax_A 93 NNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGP--SGRISVEGVMERLRPDT-LLVSLMHVN 169 (400)
T ss_dssp HHHHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCT--TCCCCHHHHHTTCCTTE-EEEECCSBC
T ss_pred HHHHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCC--CCCcCHHHHHHhcCCCc-eEEEEECCC
Confidence 999999998 8999 999999999998776654 699999999874 56799999999998766 589999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
||||.+++ +++|.++|+++|++||+|++|+... .. . .+.. . ..+++.|+||.+|.+|
T Consensus 170 -nptG~~~~---l~~i~~la~~~~~~li~D~a~~~~~---~~---------~-~~~~----~-~d~~~~s~~K~~g~~g- 226 (400)
T 3vax_A 170 -NETGVIQP---VAELAQQLRATPTYLHVDAAQGYGK---VP---------G-DLTT----P-IDMISISGHKIGAPKG- 226 (400)
T ss_dssp -TTTCBBCC---HHHHHHHHTTSSCEEEEECTTTTTT---SG---------G-GGGS----C-CSEEEEETGGGTSCSS-
T ss_pred -CCceeeCc---HHHHHHHHHhcCCEEEEEhhhhcCC---CC---------c-Chhh----c-CcEEEEeHHHhCCCCc-
Confidence 99999999 7889999999999999999996211 11 0 0111 1 3589999999877655
Q ss_pred eeeEEE-eCcHHHH---HHHHhCC---------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 837 KFGFLV-LNHPQLV---DAFSSFP---------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 837 RiG~lv-~~~~~li---~~l~~~~---------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+|+++ ++++.+. ..+.... ....++...+.++..++.. +.++++++++.++++++++.
T Consensus 227 -~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~~l~ 297 (400)
T 3vax_A 227 -VGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI-------FEAEHAQWQVAAQDLRSRLL 297 (400)
T ss_dssp -CEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHH-------HHHSHHHHHHHHHHHHHHHH
T ss_pred -eEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHH
Confidence 67777 7662111 1111111 1334566677766666631 12445666777777776654
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-20 Score=213.81 Aligned_cols=266 Identities=11% Similarity=0.051 Sum_probs=185.4
Q ss_pred CCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 613 PNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 613 ~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.+...+|+..+.+ +++ .++.+.+++.+.+..+. ...+..+.+.++++.+++.++... + +|++|+|+++++..
T Consensus 41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~v~~~~gg~ea~~~ 117 (433)
T 1zod_A 41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGL--D-RALLLSTGAESNEA 117 (433)
T ss_dssp TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTC--C-EEEEESCHHHHHHH
T ss_pred CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCc--C-EEEEeCchHHHHHH
Confidence 4567889876654 344 47889999998886642 223345678889999999887654 3 89999999999999
Q ss_pred HHHHhc--cCCCeEEEcCCCcHHHHHHHHHc--------------CCEEEEecCCCCCCcc--------cCHHHHHHHhh
Q 043334 688 LVLCCI--LEGGTLCFPAGSNGNYVSAARFL--------------KANIVNIPTESEVGFK--------MTEKTLVTILE 743 (903)
Q Consensus 688 ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~--------------G~~vv~v~~~~~~~f~--------ld~~~L~~~l~ 743 (903)
++..+. ..+|.|++.+|+|.++...+... |+..++++......|. +|+++|++.++
T Consensus 118 a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 197 (433)
T 1zod_A 118 AIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLID 197 (433)
T ss_dssp HHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHH
Confidence 987653 23579999999997654433321 3444444322111222 46899999887
Q ss_pred c---CCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC
Q 043334 744 T---VKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819 (903)
Q Consensus 744 ~---~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~ 819 (903)
+ .+ ..+++++|++||||. +.+.+++++|.++|++||++||+||+|.++.+.+... . .......+
T Consensus 198 ~~~~~~-~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~---~----~~~~~~~~---- 265 (433)
T 1zod_A 198 RQSSGN-LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF---A----CQRDGVTP---- 265 (433)
T ss_dssp HHCCSC-EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---T----HHHHTCCC----
T ss_pred hcCCCC-eEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHh---H----HhhcCCCC----
Confidence 4 23 357778887689995 6789999999999999999999999998765544321 1 12222111
Q ss_pred ceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC--C--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Q 043334 820 NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF--P--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLE 895 (903)
Q Consensus 820 ~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~--~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~ 895 (903)
. +.||||.+++ |+|+||++++++ +++.+... . .+.+.+.++|.++.++|+.-.. +.+.+++.++++.++
T Consensus 266 d---i~s~sK~~~~-G~~ig~~~~~~~-~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~ 338 (433)
T 1zod_A 266 D---ILTLSKTLGA-GLPLAAIVTSAA-IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLR 338 (433)
T ss_dssp S---EEEECHHHHT-TSSCEEEEECHH-HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHH
T ss_pred C---EEEecccccC-CCCeeEEEEhHH-HHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHH
Confidence 2 3489999985 999999999987 99888762 2 3667789999998888842111 234566666666666
Q ss_pred HHHHH
Q 043334 896 SRSKR 900 (903)
Q Consensus 896 ~Rr~~ 900 (903)
++.+.
T Consensus 339 ~~l~~ 343 (433)
T 1zod_A 339 RGLLD 343 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-20 Score=210.58 Aligned_cols=267 Identities=10% Similarity=0.059 Sum_probs=184.9
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccCC--CCC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQNM--SES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~~--~~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..+...+|++.+.+ +++ .++.+.+++.+.+..+.. ..+ ..+...++++.++++++... + +|++|+|+++++
T Consensus 40 ~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~v~~~~ggtea~ 116 (429)
T 1s0a_A 40 SDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPL--E-CVFLADSGSVAV 116 (429)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTC--C-EEEEESSHHHHH
T ss_pred CCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCC--C-EEEEeCCHHHHH
Confidence 34567889987763 444 588999999998865421 113 34567788888998887643 3 899999999999
Q ss_pred HHHHHHhc---c----CCCeEEEcCCCcHHHHHHHHHc----------------CCEEEEecCCC-CCCc-ccCHHHHHH
Q 043334 686 NKLVLCCI---L----EGGTLCFPAGSNGNYVSAARFL----------------KANIVNIPTES-EVGF-KMTEKTLVT 740 (903)
Q Consensus 686 ~~ll~~l~---~----pGD~Vlv~~P~y~~~~~~~~~~----------------G~~vv~v~~~~-~~~f-~ld~~~L~~ 740 (903)
..++..+. + |||.|++.+|+|..+...+... ++..++++... ++.| .+|++++++
T Consensus 117 ~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (429)
T 1s0a_A 117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR 196 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHH
Confidence 99887654 2 6899999999998754433221 23444443211 1234 478999999
Q ss_pred HhhcC-CCcEEEEECCC-CCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCC
Q 043334 741 ILETV-KKPWVYISGPT-INPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNS 817 (903)
Q Consensus 741 ~l~~~-~~~~vil~~P~-~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~ 817 (903)
.+++. ....+++++|+ |||||. +.+.+++++|.++|+++|+++|+||+|.++.+.+... . .......+
T Consensus 197 ~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~---~----~~~~~~~~-- 267 (429)
T 1s0a_A 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLF---A----CEHAEIAP-- 267 (429)
T ss_dssp HHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGGGTCCC--
T ss_pred HHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHH---H----hhhcCCCC--
Confidence 88741 12367788897 799995 6678999999999999999999999998765444321 1 11111111
Q ss_pred CCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC------C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHH
Q 043334 818 SFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF------P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAE 889 (903)
Q Consensus 818 ~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~------~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~ 889 (903)
.+ .||||.++ +| +|+||++++++ +++.+... . .+.+++.++|.++.++|+.-.. +.+.+++.+
T Consensus 268 --d~---~t~sK~l~-~G~~~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~ 338 (429)
T 1s0a_A 268 --DI---LCLGKALT-GGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVAD 338 (429)
T ss_dssp --SE---EEECGGGG-TSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred --CE---EEeccccc-CCCccceEEEeCHH-HHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHH
Confidence 22 37999998 58 99999999887 88988763 2 3667789999999888842111 234455666
Q ss_pred HHHHHHHHHH
Q 043334 890 HIRNLESRSK 899 (903)
Q Consensus 890 ~r~~y~~Rr~ 899 (903)
+++.++++.+
T Consensus 339 ~~~~l~~~L~ 348 (429)
T 1s0a_A 339 IEVQLREQLA 348 (429)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-20 Score=206.48 Aligned_cols=210 Identities=11% Similarity=0.117 Sum_probs=161.4
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
.+..+.++.| +.++++.+.+++.+.+... ......+..+.+++.+++++|.+.+ .+|++|+|+++++..++.+++
T Consensus 17 ~~~~~~~~~g--~~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~--~~i~~~~g~t~a~~~~~~~~~ 91 (393)
T 2huf_A 17 TPNKLLMGPG--PSNAPQRVLDAMSRPILGH-LHPETLKIMDDIKEGVRYLFQTNNI--ATFCLSASGHGGMEATLCNLL 91 (393)
T ss_dssp CCCCEECSSS--CCCCCHHHHHHTTSCCCCT-TSHHHHHHHHHHHHHHHHHHTCCCS--EEEEESSCHHHHHHHHHHHHC
T ss_pred CCCeEEecCC--CCCCCHHHHHHHHhhhccC-CCHHHHHHHHHHHHHHHHHhCCCCC--cEEEEcCcHHHHHHHHHHHHh
Confidence 3456776666 3567888888876654321 1112234567788888888887532 279999999999999999999
Q ss_pred cCCCeEEEcCCCcHHH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 694 LEGGTLCFPAGSNGNY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++||+|+++.|+|+.+ ...++..|++++.++++. ++.+|++.+++.+++ ++ ++|++++|+ ||||.+++ ++
T Consensus 92 ~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~---l~ 164 (393)
T 2huf_A 92 EDGDVILIGHTGHWGDRSADMATRYGADVRVVKSKV--GQSLSLDEIRDALLIHKP-SVLFLTQGD-SSTGVLQG---LE 164 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CT
T ss_pred CCCCEEEEECCCcchHHHHHHHHHcCCeeEEEeCCC--CCCCCHHHHHHHHhccCC-cEEEEEccC-CCccccCC---HH
Confidence 9999999999999884 334567899999999864 457999999999987 66 599999998 99999999 88
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh-cccccceeeEEEeCcHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK-MLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~-~g~~GlRiG~lv~~~~~li 849 (903)
+|.++|+++|++||+|++++ +..... + +... +.++++.|+||. +|++|+ ||++++++ ++
T Consensus 165 ~i~~~~~~~~~~li~D~a~~---~~~~~~---~-------~~~~----~~d~~~~s~sK~l~g~~G~--G~~~~~~~-~~ 224 (393)
T 2huf_A 165 GVGALCHQHNCLLIVDTVAS---LGGAPM---F-------MDRW----EIDAMYTGSQKVLGAPPGI--TPVSFSHR-AV 224 (393)
T ss_dssp THHHHHHHTTCEEEEECTTT---BTTBCC---C-------TTTT----TCSEEECCSSSTTCCCSSC--EEEEECHH-HH
T ss_pred HHHHHHHHcCCEEEEEcccc---cCCCCc---c-------hhhc----CccEEEECCCcccccCCCe--EEEEECHH-HH
Confidence 99999999999999999984 222111 1 1111 367899999997 567887 99999876 88
Q ss_pred HHHHhC
Q 043334 850 DAFSSF 855 (903)
Q Consensus 850 ~~l~~~ 855 (903)
+.+...
T Consensus 225 ~~~~~~ 230 (393)
T 2huf_A 225 ERYKRR 230 (393)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 888764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=208.72 Aligned_cols=247 Identities=11% Similarity=0.087 Sum_probs=178.4
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEE
Q 043334 621 DVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLC 700 (903)
Q Consensus 621 s~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vl 700 (903)
..+.++.++++.+.+++.+.+.. ..........+.+++.+++++|.+.+ .+|++|+|+++++..++.+++++||+|+
T Consensus 21 ~~~~~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~--~~v~~~~g~t~al~~~~~~~~~~gd~vl 97 (396)
T 2ch1_A 21 MMGPGPSNCSKRVLTAMTNTVLS-NFHAELFRTMDEVKDGLRYIFQTENR--ATMCVSGSAHAGMEAMLSNLLEEGDRVL 97 (396)
T ss_dssp CCSSSSCCCCHHHHHHTTSCCCC-TTCHHHHHHHHHHHHHHHHHHTCCCS--CEEEESSCHHHHHHHHHHHHCCTTCEEE
T ss_pred eecCCCCCCCHHHHHHhcccccc-CCChhHHHHHHHHHHHHHHHhCCCCC--cEEEECCcHHHHHHHHHHHhcCCCCeEE
Confidence 34555666788888877654322 11111113456677777777787532 2699999999999999999999999999
Q ss_pred EcCCCcHHHH--HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHH
Q 043334 701 FPAGSNGNYV--SAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCA 777 (903)
Q Consensus 701 v~~P~y~~~~--~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~ 777 (903)
+++|+|+.+. ..++..|++++.++++. ++.+|++++++.+++ ++ ++|++++|+ ||||.+++ +++|.++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~~~---~~~i~~l~~ 170 (396)
T 2ch1_A 98 IAVNGIWAERAVEMSERYGADVRTIEGPP--DRPFSLETLARAIELHQP-KCLFLTHGD-SSSGLLQP---LEGVGQICH 170 (396)
T ss_dssp EEESSHHHHHHHHHHHHTTCEEEEEECCT--TSCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CTTHHHHHH
T ss_pred EEcCCcccHHHHHHHHHcCCceEEecCCC--CCCCCHHHHHHHHHhCCC-CEEEEECCC-CCCceecC---HHHHHHHHH
Confidence 9999999985 47788999999999864 577999999999987 56 599999998 99999999 888999999
Q ss_pred hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC--
Q 043334 778 KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF-- 855 (903)
Q Consensus 778 k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~-- 855 (903)
++|++||+||+|+ ++..+. + + ... +..+++.|++|.++ ++.++||+++++. +++.+...
T Consensus 171 ~~~~~li~Dea~~---~g~~~~---~----~---~~~----~~d~~~~s~~K~~~-~~~g~g~~~~~~~-~~~~~~~~~~ 231 (396)
T 2ch1_A 171 QHDCLLIVDAVAS---LCGVPF---Y----M---DKW----EIDAVYTGAQKVLG-APPGITPISISPK-ALDVIRNRRT 231 (396)
T ss_dssp HTTCEEEEECTTT---BTTBCC---C----T---TTT----TCCEEECCCC-CCC-CCSSCEEEEECHH-HHHHHHTCSS
T ss_pred HcCCEEEEEcccc---ccCCcc---c----h---hhc----CcCEEEEcCCcccc-CCCCeEEEEECHH-HHHhhhhccC
Confidence 9999999999996 322211 1 1 111 23567799999765 3345699999886 88877532
Q ss_pred ----------------------C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 856 ----------------------P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 856 ----------------------~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
. ...+++...|.++..+|.. - .+++++++++.++++++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~--~----~~~~~~~~~~~~~~~~~~l~ 295 (396)
T 2ch1_A 232 KSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQ--I----AEEGLENQIKRRIECAQILY 295 (396)
T ss_dssp CCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHH--H----HHHCHHHHHHHHHHHHHHHH
T ss_pred cccceEechHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHH--H----HHhhHHHHHHHHHHHHHHHH
Confidence 1 1345678888888888841 1 12345566666667666654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=217.03 Aligned_cols=250 Identities=14% Similarity=0.094 Sum_probs=166.8
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHcc-C-CCCCc------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQ-N-MSESE------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y-~-~~~G~------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+.+.|+.+.+. ++|+.+++++.+.+... . +..++ .+..+.+++.+++++|++. + +|++|+|+++++.
T Consensus 17 ~~~~~Ld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~--~-~v~~~~g~t~a~~ 92 (432)
T 3a9z_A 17 NRKVYMDYNATT-PLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKP--Q-DIIFTSGGTESNN 92 (432)
T ss_dssp -CCEECBTTTCC-CCCHHHHHHHHHHHHHCCSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCG--G-GEEEESCHHHHHH
T ss_pred CCcEEeeCCccC-CCCHHHHHHHHHHHHHhcCCCccCcHHHHHHHHHHHHHHHHHHHHcCCCc--C-eEEEeCChHHHHH
Confidence 468999999887 67888999998887652 1 11122 2334677777777788753 3 8999999999999
Q ss_pred HHHHHhc--------cCCCeEEEcCCCcHHH-----------------HHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 687 KLVLCCI--------LEGGTLCFPAGSNGNY-----------------VSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 687 ~ll~~l~--------~pGD~Vlv~~P~y~~~-----------------~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
.++.+++ ++||+|+++.|+|..| ...++..|++++.+|++.+ ++.+|+++|++.
T Consensus 93 ~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~-~~~~d~~~l~~~ 171 (432)
T 3a9z_A 93 LVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKV-NGQVEVEDILAA 171 (432)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTT-TSSCCHHHHHHT
T ss_pred HHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcc-cCCcCHHHHHHh
Confidence 9998886 5899999999999765 3445567999999998752 457899999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC----------cEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG----------ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~----------i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
+++++ ++|++++|+ ||||.+++ +++|.++|++++ ++||+|++|+... .. .+ +...
T Consensus 172 i~~~~-~~v~~~~~~-nptG~~~~---~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~---~~---~~----~~~~ 236 (432)
T 3a9z_A 172 VRPTT-CLVTIMLAN-NETGVIMP---ISEISRRIKALNQIRAASGLPRVLVHTDAAQALGK---RR---VD----VEDL 236 (432)
T ss_dssp CCTTE-EEEECCSBC-TTTCBBCC---HHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTT---SC---CC----HHHH
T ss_pred ccCCc-eEEEEECcc-cCcccccC---HHHHHHHHHhcCcccccccCCceEEEEEchhhhCC---cc---cC----hhhc
Confidence 98765 589999998 99999999 567888889998 9999999996421 11 11 1111
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH-HHHHHhC---------CCCCCCcHHHHHHHHHHHhcccccch
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL-VDAFSSF---------PGLSKPHSTVRYAIKKLLGLRERKAR 881 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l-i~~l~~~---------~~~~~~s~~~Q~aa~~~L~~~~~~~~ 881 (903)
. ..+++.|+||.+ |.|+||++++++ + ...+... .....++...+.++..++..
T Consensus 237 ~-------~d~~~~s~~K~~---g~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~------ 299 (432)
T 3a9z_A 237 G-------VDFLTIVGHKFY---GPRIGALYVRGV-GKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADL------ 299 (432)
T ss_dssp C-------CSEEEEEGGGTT---CCSCEEEEETTB-TTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHH------
T ss_pred C-------CCEEEEehhHhc---CCcceEEEEccc-cccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHH------
Confidence 1 235689999976 467999999876 3 2222211 11345677778777777731
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 043334 882 DLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 882 ~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
++++++++++.++++++++.
T Consensus 300 -~~~~~~~~~~~~~~~~~~l~ 319 (432)
T 3a9z_A 300 -VSENCETYEAHMRDIRDYLE 319 (432)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhHHHHHHHHHHHHHHHH
Confidence 12345556666666665543
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=207.82 Aligned_cols=243 Identities=12% Similarity=0.037 Sum_probs=177.2
Q ss_pred EccCCCCCCCCcHHHHHHHHHHHHccCC-C-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 619 HMDVDQSFLPIPSLVKAAIFESFARQNM-S-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 619 dLs~g~p~~~~p~~v~~al~~al~~y~~-~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.|+.+.+. ++|+.+.+++.+.+.+... . .+..++.+.+++++++++|.+.+ +|++|+|+++++..++.
T Consensus 3 yld~~~~~-~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~i~~~~g~~~a~~~~~~ 78 (382)
T 4hvk_A 3 YFDYTSAK-PVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGG---TVVFTSGATEANNLAII 78 (382)
T ss_dssp BCBTTTCC-CCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCTTE---EEEEESSHHHHHHHHHH
T ss_pred eecCCCcC-CCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHcCCCcC---eEEEECCchHHHHHHHH
Confidence 44444433 5678899999888765221 1 12345677889999999997543 89999999999999999
Q ss_pred Hhc----cCCCeEEEcCCCcHHHHHHHHH---cCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 691 CCI----LEGGTLCFPAGSNGNYVSAARF---LKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~l~----~pGD~Vlv~~P~y~~~~~~~~~---~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+++ ++||.|+++.|+|+.+...+.. .|++++.++++. ++.+|++++++++++++ +++++++|+ ||||.+
T Consensus 79 ~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~-~~v~~~~~~-nptG~~ 154 (382)
T 4hvk_A 79 GYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGK--YGEVDVSFIDQKLRDDT-ILVSVQHAN-NEIGTI 154 (382)
T ss_dssp HHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCT--TSCBCHHHHHHHCCTTE-EEEECCSBC-TTTCBB
T ss_pred HhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCC--CCCcCHHHHHHHhccCc-eEEEEECCC-CCceee
Confidence 988 9999999999999998876655 699999999974 46799999999998766 589999998 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
++ +++|.++|+++|+ ||+|++|+. .... .+ .. .. +..+++.|+||.+|.+| +|++++
T Consensus 155 ~~---~~~i~~l~~~~~~-li~D~a~~~---~~~~---~~----~~---~~----~~d~~~~s~~K~~g~~g--~g~~~~ 211 (382)
T 4hvk_A 155 QP---VEEISEVLAGKAA-LHIDATASV---GQIE---VD----VE---KI----GADMLTISSNDIYGPKG--VGALWI 211 (382)
T ss_dssp CC---HHHHHHHHSSSSE-EEEECTTTB---TTBC---CC----HH---HH----TCSEEEEESGGGTSCTT--CEEEEE
T ss_pred CC---HHHHHHHHHHcCE-EEEEhHHhc---CCCC---CC----ch---hc----CCCEEEEeHHHhcCCCc--eEEEEE
Confidence 99 7789999999999 999999852 1111 11 11 11 25789999999887666 788887
Q ss_pred CcHHHHHHHHhCC---------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 844 NHPQLVDAFSSFP---------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 844 ~~~~li~~l~~~~---------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++ . .+.... ....++...+.++..++. . ..++++++++.++++++.+.
T Consensus 212 ~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~--~-----~~~~~~~~~~~~~~~~~~l~ 269 (382)
T 4hvk_A 212 RKE-A--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE--I-----TAMEWREEAERLRRLRDRII 269 (382)
T ss_dssp ETT-C--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCc-c--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH--H-----HHhhHHHHHHHHHHHHHHHH
Confidence 765 2 111111 023346666766666663 1 12456667777777776654
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-20 Score=205.99 Aligned_cols=246 Identities=10% Similarity=0.012 Sum_probs=174.4
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG 696 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG 696 (903)
.+.|+.+.+ .++|+.+++++.+.+.. ....+..+..+.+++.+++++|.+. + +|++|+|+++++..++.+++++|
T Consensus 9 ~~yl~~~~~-~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~--~-~v~~t~g~t~a~~~~~~~~~~~g 83 (392)
T 2z9v_A 9 PVITLTAGP-VNAYPEVLRGLGRTVLY-DYDPAFQLLYEKVVDKAQKAMRLSN--K-PVILHGEPVLGLEAAAASLISPD 83 (392)
T ss_dssp CSEECSSSC-CCCCHHHHHHTTSCCCC-TTSHHHHHHHHHHHHHHHHHTTCSS--C-CEEESSCTHHHHHHHHHHHCCTT
T ss_pred cceeecCCC-cCCCHHHHHHHhccccc-cccHHHHHHHHHHHHHHHHHhCCCC--C-EEEEeCCchHHHHHHHHHhcCCC
Confidence 355655543 35678888877665432 1111223445677888888888753 3 89999999999999999999999
Q ss_pred CeEEEcCCCcHHH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 697 GTLCFPAGSNGNY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 697 D~Vlv~~P~y~~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
|+|+++.|+|+.+ ...++..|++++.++++. ++.+|++++++.++ +++ ++|++++|+ ||||.+++ +++|
T Consensus 84 d~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~-~~v~~~~~~-nptG~~~~---l~~i 156 (392)
T 2z9v_A 84 DVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPY--NEAIDPQAVADMLKAHPEI-TVVSVCHHD-TPSGTINP---IDAI 156 (392)
T ss_dssp CCEEEEESSHHHHHHHHHHHHHCSCEEEEECCT--TSCCCHHHHHHHHHHCTTC-CEEEEESEE-GGGTEECC---HHHH
T ss_pred CEEEEecCCcccHHHHHHHHHcCCceEEeeCCC--CCCCCHHHHHHHHhcCCCC-cEEEEeccC-CCCceecc---HHHH
Confidence 9999999999876 344566899999999875 34689999999985 344 589999998 99999998 7799
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~ 851 (903)
.++|+++|++||+|++|+. .... .+ +. .. +..++++|+||.+ |.+|+ ||++++++ +++.
T Consensus 157 ~~l~~~~~~~li~D~a~~~---g~~~---~~----~~---~~----~~d~~~~s~sK~~~~~~g~--G~l~~~~~-~~~~ 216 (392)
T 2z9v_A 157 GALVSAHGAYLIVDAVSSF---GGMK---TH----PE---DC----KADIYVTGPNKCLGAPPGL--TMMGVSER-AWAK 216 (392)
T ss_dssp HHHHHHTTCEEEEECTTTB---TTBS---CC----GG---GG----TCSEEEECSSSTTCCCSCC--EEEEECHH-HHHH
T ss_pred HHHHHHcCCeEEEEccccc---CCcc---cc----cc---cc----cceEEEecCcccccCCCce--eEEEECHH-HHHH
Confidence 9999999999999999962 2111 11 11 11 2568999999954 45664 99999987 8888
Q ss_pred HHhCC---------------------C-CCCCcHHHHHHHHHHHhcccccchhHHHH-HHHHHHHHHHHHHHH
Q 043334 852 FSSFP---------------------G-LSKPHSTVRYAIKKLLGLRERKARDLMNA-VAEHIRNLESRSKRL 901 (903)
Q Consensus 852 l~~~~---------------------~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~-l~~~r~~y~~Rr~~l 901 (903)
+.... . ...++...+.++..+++. +.++ ++++++.++++++.+
T Consensus 217 l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~g~~~~~~~~~~~~~~l 282 (392)
T 2z9v_A 217 MKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDL-------YLNEGPEAVWARHALTAKAM 282 (392)
T ss_dssp HHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHH-------HHhccHHHHHHHHHHHHHHH
Confidence 76421 1 234455666666666631 1222 455556666666554
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=211.82 Aligned_cols=233 Identities=10% Similarity=0.028 Sum_probs=175.0
Q ss_pred CCCCCeEEccCCCCCCC---CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQSFLP---IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~~~---~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..+...+|++.+.+..+ .++.+.+++.+.+..+.. ..+..+.++++++++++.+| ++ ++++++|+++++.
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g----~~-~v~~~~~gt~a~~ 107 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTN----KE-MVLPMNTGAEAVE 107 (392)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHT----CS-EEEEESSHHHHHH
T ss_pred CCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC----CC-EEEEeCcHHHHHH
Confidence 35677899987765544 578899999998866432 23456778889999998887 23 8999999999999
Q ss_pred HHHHHhccC----------CCeEEEcCCCcHHHHHHHHHcCCE-------------EEEecCCCCCCcccCHHHHHHHhh
Q 043334 687 KLVLCCILE----------GGTLCFPAGSNGNYVSAARFLKAN-------------IVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 687 ~ll~~l~~p----------GD~Vlv~~P~y~~~~~~~~~~G~~-------------vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.++..+..+ ||.|+++.|+|..+...+...+.. +..++. .|+++++++++
T Consensus 108 ~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~ 180 (392)
T 3ruy_A 108 TAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPY-------GDLEALKAAIT 180 (392)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECT-------TCHHHHHHHCC
T ss_pred HHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCc-------ccHHHHHHHhc
Confidence 999887655 679999999997665555444322 444443 27999999998
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHH-HHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKE-IENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~ee-l~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
+++ ++|++++|+ ||||.+++.++ +++|.++|+++|++||+||+|.++.+.+... . .......+ .+
T Consensus 181 ~~~-~~v~~~~~~-nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~---~----~~~~~~~~----d~- 246 (392)
T 3ruy_A 181 PNT-AAFILEPIQ-GEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF---A----CDWDNVTP----DM- 246 (392)
T ss_dssp TTE-EEEEECSSB-STTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSS---G----GGGGTCCC----SE-
T ss_pred cCe-EEEEEeCcc-CCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccch---h----hhccCCCC----CE-
Confidence 655 589999997 99999996555 9999999999999999999998776665432 1 11111111 23
Q ss_pred EEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 823 LLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 823 ~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
.||||.++ +| +|+||++++++ +++.+..... ..+.+.+.|.++..+|+
T Consensus 247 --~~~SK~l~-gG~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 297 (392)
T 3ruy_A 247 --YILGKALG-GGVFPISCAAANRD-ILGVFEPGSHGSTFGGNPLACAVSIAALE 297 (392)
T ss_dssp --EEECGGGG-TTTSCCEEEEECHH-HHTTCCTTSSCCSSTTCHHHHHHHHHHHH
T ss_pred --EEEchhhh-CChhhhEEEEECHH-HHhhhccCCcCCCCCCCHHHHHHHHHHHH
Confidence 37799875 36 99999999887 8877765443 67788999999999984
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=209.98 Aligned_cols=263 Identities=9% Similarity=0.007 Sum_probs=180.7
Q ss_pred CCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC-CC-CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 613 PNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM-SE-SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 613 ~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~-~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.+...+|++.|. ++++ +++.+.+++.+.+..+.. .. ...+.++.+++.+++++|... + +|++|+|+++++..
T Consensus 43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~v~~~~gg~~a~~~ 119 (395)
T 1vef_A 43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPEL--N-RVFPVNSGTEANEA 119 (395)
T ss_dssp TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTE--E-EEEEESSHHHHHHH
T ss_pred CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCc--C-EEEEcCcHHHHHHH
Confidence 456788998875 4554 788999999998876432 11 135678889999999887643 3 89999999999999
Q ss_pred HHHHhc--cCCCeEEEcCCCcHH-HHHHHHHcCCEEEE---ecCCCCCC-c-ccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 688 LVLCCI--LEGGTLCFPAGSNGN-YVSAARFLKANIVN---IPTESEVG-F-KMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 688 ll~~l~--~pGD~Vlv~~P~y~~-~~~~~~~~G~~vv~---v~~~~~~~-f-~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
++.++. .+||.|++++|+|.. +...+...|.+++. +|+..+.. + ..|++++++.+++++ ++|+ ++|++||
T Consensus 120 al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~~~~-~~v~-~~~~~~~ 197 (395)
T 1vef_A 120 ALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVDEET-AAVI-LEPVQGE 197 (395)
T ss_dssp HHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTE-EEEE-ECSEETT
T ss_pred HHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhccCE-EEEE-EeCccCC
Confidence 988764 688999999999864 45566667765221 12111000 0 148999999987654 3554 5555589
Q ss_pred cccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 760 TGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 760 TG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
||.++ +.+++++|.++|+++|++||+||+|.++.+.+... . +......+ .++ ||||.++. |+|+
T Consensus 198 tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~---~----~~~~~~~~----d~~---s~sK~~~~-g~~~ 262 (395)
T 1vef_A 198 GGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRF---A----FEHFGIVP----DIL---TLAKALGG-GVPL 262 (395)
T ss_dssp TTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---T----HHHHTCCC----SEE---EECGGGGT-TSSC
T ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchh---H----hhhcCCCC----CEE---EEcccccC-CCce
Confidence 99875 78899999999999999999999998654444321 1 11111111 222 88999985 9999
Q ss_pred eEEEeCcHHHHHHHHhC--CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 839 GFLVLNHPQLVDAFSSF--PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 839 G~lv~~~~~li~~l~~~--~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
||++++++ +++.+... ....+++.+.|.++..+|+.-.. +.+.+++.+.++.+.++.
T Consensus 263 G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l 321 (395)
T 1vef_A 263 GVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKL 321 (395)
T ss_dssp EEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHH
T ss_pred EEEEehHH-HHhhhccCCcCCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH
Confidence 99999987 88877652 23566788899888888842111 123344455555554443
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-20 Score=203.38 Aligned_cols=239 Identities=14% Similarity=0.081 Sum_probs=173.2
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+.++|+.+.+++.+.+..+ ......+..+.+++++++++|.+.+++ +|++|+|+++++..++.++++ |+|++++|+
T Consensus 8 p~~~~~~v~~a~~~~~~~~-~~~~~~~~~~~l~~~la~~~g~~~~~~-~v~~t~g~t~a~~~~~~~~~~--d~vl~~~~~ 83 (353)
T 2yrr_A 8 PTPIPERVQKALLRPMRGH-LDPEVLRVNRAIQERLAALFDPGEGAL-VAALAGSGSLGMEAGLANLDR--GPVLVLVNG 83 (353)
T ss_dssp SCCCCHHHHGGGGSCCCCT-TCHHHHHHHHHHHHHHHHHHCCCTTCE-EEEESSCHHHHHHHHHHTCSC--CCEEEEECS
T ss_pred CCCCCHHHHHHHhcccccc-cCHHHHHHHHHHHHHHHHHhCCCCCCc-eEEEcCCcHHHHHHHHHHhcC--CcEEEEcCC
Confidence 4567888888876654331 111123446778888888888864444 899999999999999988876 899999999
Q ss_pred cHHH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcE
Q 043334 706 NGNY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 706 y~~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~ 782 (903)
|+.+ ...++..|++++.++++. ++.+|++++++.+++ ++ ++|++++|+ ||||.+++ +++|.++|+++|++
T Consensus 84 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~~~---~~~i~~l~~~~~~~ 156 (353)
T 2yrr_A 84 AFSQRVAEMAALHGLDPEVLDFPP--GEPVDPEAVARALKRRRY-RMVALVHGE-TSTGVLNP---AEAIGALAKEAGAL 156 (353)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCT--TSCCCHHHHHHHHHHSCC-SEEEEESEE-TTTTEECC---HHHHHHHHHHHTCE
T ss_pred CchHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHHhCCC-CEEEEEccC-CCcceecC---HHHHHHHHHHcCCe
Confidence 9875 455678999999999964 467999999999987 55 589999998 99999999 67899999999999
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHh-------
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSS------- 854 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~------- 854 (903)
||+|++|+. .... .+ +..+ +..+++.|++|.+ +.+| +||++++++ +++.+..
T Consensus 157 li~D~a~~~---~~~~---~~----~~~~-------~~d~~~~s~~K~~~~~~g--~G~~~~~~~-~~~~l~~~~~~~~~ 216 (353)
T 2yrr_A 157 FFLDAVTTL---GMLP---FS----MRAM-------GVDYAFTGSQKCLSAPPG--LAPIAASLE-ARKAFTGKRGWYLD 216 (353)
T ss_dssp EEEECTTTT---TTSC---CC----HHHH-------TCSEEECCTTSTTCCCSS--CEEEEECHH-HHHHCCCCSCSTTC
T ss_pred EEEEcCccc---cccc---cc----cccc-------CceEEEecCcccccCCCc--eEEEEECHH-HHHHhccCCCcccc
Confidence 999999952 2211 11 1211 1367889999955 5566 699999987 7776641
Q ss_pred ----------CCCCCCCcHHHHHHHHHHHhcccccchhHHHH-HHHHHHHHHHHHHHHh
Q 043334 855 ----------FPGLSKPHSTVRYAIKKLLGLRERKARDLMNA-VAEHIRNLESRSKRLK 902 (903)
Q Consensus 855 ----------~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~-l~~~r~~y~~Rr~~l~ 902 (903)
.....+++...+.++..+++. +.++ ++++++.++++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~~~l~ 268 (353)
T 2yrr_A 217 LARVAEHWERGGYHHTTPVLLHYALLEALDL-------VLEEGVAARERRAREVYAWVL 268 (353)
T ss_dssp HHHHHHHHTTCCCSSCCCHHHHHHHHHHHHH-------HHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhcCCCCCCCCHHHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHH
Confidence 112345677777777777731 1122 4556666666666553
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=207.56 Aligned_cols=207 Identities=10% Similarity=0.035 Sum_probs=163.4
Q ss_pred CCCCeE--EccCCCCCCCCcHHHHHHHHHHHHc--cCC-CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 613 PNSGLI--HMDVDQSFLPIPSLVKAAIFESFAR--QNM-SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 613 ~~~~~I--dLs~g~p~~~~p~~v~~al~~al~~--y~~-~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
.|.+++ +|+.|+|++++|+.+.+++.+.+.. |.. ..+..++++++++++ |. + ++++|+|+++++..
T Consensus 12 gg~~~~~~~l~~~~p~~~~p~~~~~a~~~~~~~~~y~~~~~~~~~l~~~la~~~----~~--~---~v~~~~ggt~al~~ 82 (424)
T 2po3_A 12 GGPAAFDQPLLVGRPNRIDRARLYERLDRALDSQWLSNGGPLVREFEERVAGLA----GV--R---HAVATCNATAGLQL 82 (424)
T ss_dssp TCCCSCSSCEETTCCCCCCHHHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHH----TS--S---EEEEESCHHHHHHH
T ss_pred cCCccccccccccCCCCCChHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHh----CC--C---eEEEeCCHHHHHHH
Confidence 444444 6899999999999999999888764 322 234555666666554 43 2 79999999999999
Q ss_pred HHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 688 LVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 688 ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
++.++. +||+|++++|+|+.+...++..|++++.+++++ ++|.+|++++++.+++++ ++|+++ ||||...+
T Consensus 83 ~l~~l~-~gd~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~-~~v~~~----~~tG~~~~-- 153 (424)
T 2po3_A 83 LAHAAG-LTGEVIMPSMTFAATPHALRWIGLTPVFADIDP-DTGNLDPDQVAAAVTPRT-SAVVGV----HLWGRPCA-- 153 (424)
T ss_dssp HHHHHT-CCSEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTSSBCHHHHGGGCCTTE-EEEEEE----CGGGCCCC--
T ss_pred HHHHcC-CCCEEEECCCccHHHHHHHHHcCCEEEEEecCC-CcCCcCHHHHHHhhCcCC-cEEEEE----CCCCCcCC--
Confidence 998885 799999999999999999999999999999975 468899999999987655 467664 68898755
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 768 EIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+++|.++|+++|++||+|++|+ ++.|++.. +. ..+ .+++.||||..+++|+|+||++++++
T Consensus 154 -l~~i~~la~~~~~~li~Dea~~~g~~~~~~~---------~~---~~~-----di~~~S~sk~K~l~~~~~G~~v~~~~ 215 (424)
T 2po3_A 154 -ADQLRKVADEHGLRLYFDAAHALGCAVDGRP---------AG---SLG-----DAEVFSFHATKAVNAFEGGAVVTDDA 215 (424)
T ss_dssp -HHHHHHHHHHTTCEEEEECTTCTTCEETTEE---------TT---SSS-----SEEEEECCTTSSSCCSSCEEEEESCH
T ss_pred -HHHHHHHHHHcCCEEEEECccccCCeECCee---------cc---ccc-----CEEEEeCCCCCCccCCCCeEEEeCCH
Confidence 8899999999999999999998 46665432 11 111 28999999777778899999999954
Q ss_pred HHHHHHHhC
Q 043334 847 QLVDAFSSF 855 (903)
Q Consensus 847 ~li~~l~~~ 855 (903)
++++.+...
T Consensus 216 ~l~~~l~~~ 224 (424)
T 2po3_A 216 DLAARIRAL 224 (424)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 488887654
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-20 Score=206.23 Aligned_cols=249 Identities=13% Similarity=0.137 Sum_probs=174.8
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCc-h-HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESE-I-DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~-~-~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
++++|+.| | .++++.+.+++.+.+. ...+. . +..+.+++.+++++|.+.+++ ++++|+|+++++..++.+++
T Consensus 4 ~~~~~~~g-p-~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~~~~~~-~v~~~~g~t~a~~~~~~~~~ 77 (366)
T 1m32_A 4 NYLLLTPG-P-LTTSRTVKEAMLFDSC---TWDDDYNIGVVEQIRQQLTALATASEGYT-SVLLQGSGSYAVEAVLGSAL 77 (366)
T ss_dssp -CEECSSS-S-CCCCHHHHHTTCCCCC---TTSHHHHTTTHHHHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHHHHHSC
T ss_pred ccccccCC-C-cCCCHHHHHHHhhhhc---CCCHHHHHHHHHHHHHHHHHHhCCCCcCc-EEEEecChHHHHHHHHHHhc
Confidence 36889888 3 4578888888766431 11111 1 334455555556667333333 79999999999999999999
Q ss_pred cCCCeEEEcC-CCcHH-HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-CCcEEEEECCCCCCcccCCCHHHHH
Q 043334 694 LEGGTLCFPA-GSNGN-YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-KKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 694 ~pGD~Vlv~~-P~y~~-~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++||.|++++ ++|+. +...++..|++++.++++. ++.+|++++++.+++. ..+++++++|+ ||||.+++ ++
T Consensus 78 ~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~l~~~~~~~~v~~~~~~-nptG~~~~---l~ 151 (366)
T 1m32_A 78 GPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGE--VARPDVQAIDAILNADPTISHIAMVHSE-TTTGMLNP---ID 151 (366)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHTCCEEEEECCT--TSCCCHHHHHHHHHHCTTCCEEEEESEE-TTTTEECC---HH
T ss_pred CCCCeEEEEeCCCccHHHHHHHHHhCCceEEEeCCC--CCCCCHHHHHHHHhcCCCeEEEEEeccc-CCcceecC---HH
Confidence 9999988776 66664 6777888999999999864 4668999999999864 23588899998 99999999 78
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|.++|+++|++||+||+|+.... +. + +... +.+++++|+||.++. +.++||++++++ +++
T Consensus 152 ~i~~l~~~~~~~li~Dea~~~~~~---~~---~-------~~~~----~~di~~~s~~K~~~~-~~g~G~~~~~~~-~~~ 212 (366)
T 1m32_A 152 EVGALAHRYGKTYIVDAMSSFGGI---PM---D-------IAAL----HIDYLISSANKCIQG-VPGFAFVIAREQ-KLA 212 (366)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTS---CC---C-------TTTT----TCSEEEEESSSTTCC-CSSEEEEEEEHH-HHT
T ss_pred HHHHHHHHcCCEEEEECCccccCc---Cc---c-------cccc----CccEEEecCcccccC-CCceEEEEECHH-HHH
Confidence 999999999999999999963221 11 1 1111 357899999997732 334699999987 777
Q ss_pred HHHhCC------------------C--CCCCcHHHHHHHHHHHhcccccchhHHHH--HHHHHHHHHHHHHHHh
Q 043334 851 AFSSFP------------------G--LSKPHSTVRYAIKKLLGLRERKARDLMNA--VAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~------------------~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~--l~~~r~~y~~Rr~~l~ 902 (903)
.+.... . ..+++...+.++..+|+. +.++ ++++++.++++++.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~-------~~~~g~~~~~~~~~~~~~~~l~ 279 (366)
T 1m32_A 213 ACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKE-------LAKEGGVAARHQRYQQNQRSLV 279 (366)
T ss_dssp TCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH-------HHHHTHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHH-------HHHccCHhHHHHHHHHHHHHHH
Confidence 665421 1 245667777777777731 1222 4556666666666553
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=204.67 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=168.5
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+.++++.+++++.+.+.. ...++..+..+.+++.+++++|.+. + ++++|+|+++++..++.+++++||+|++++|+
T Consensus 9 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~g~~~--~-~i~~~~g~t~a~~~~~~~~~~~gd~vl~~~~~ 84 (352)
T 1iug_A 9 PVRLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAFRTEG--E-VLILTGSGTLAMEALVKNLFAPGERVLVPVYG 84 (352)
T ss_dssp SCCCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHHTCSS--E-EEEEESCHHHHHHHHHHHHCCTTCEEEEEECS
T ss_pred CCCCCHHHHHHhccCCCC-ccCHHHHHHHHHHHHHHHHHhCCCC--c-eEEEcCchHHHHHHHHHhccCCCCeEEEEeCC
Confidence 356788888888776532 1112223345677777888888763 3 89999999999999999999999999999999
Q ss_pred cHHHH--HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC--Cc
Q 043334 706 NGNYV--SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY--GA 781 (903)
Q Consensus 706 y~~~~--~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~--~i 781 (903)
|+++. ..++..|++++.++++. ++.+|++++++ +++ ++|++++|+ ||||.+++ +++|.++|+++ |+
T Consensus 85 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~---~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~~ 154 (352)
T 1iug_A 85 KFSERFYEIALEAGLVVERLDYPY--GDTPRPEDVAK---EGY-AGLLLVHSE-TSTGALAD---LPALARAFKEKNPEG 154 (352)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT--TCCCCTTTSCC---SSC-SEEEEESEE-TTTTEECC---HHHHHHHHHHHCTTC
T ss_pred chhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHhc---cCC-cEEEEEEec-CCcceecC---HHHHHHHHHhhCCCC
Confidence 99975 44566899999999864 45678888766 445 589999998 99999999 78899999999 99
Q ss_pred EEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHH---------
Q 043334 782 RVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDA--------- 851 (903)
Q Consensus 782 ~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~--------- 851 (903)
+||+|++|+ ++.... . +. .. +..+++.|+||.+ +.+| +||++++++ +++.
T Consensus 155 ~li~D~a~~---~~~~~~---~----~~---~~----~~d~~~~s~~K~~~~~~g--~G~~~~~~~-~~~~~~~~~~~~~ 214 (352)
T 1iug_A 155 LVGADMVTS---LLVGEV---A----LE---AM----GVDAAASGSQKGLMCPPG--LGFVALSPR-ALERLKPRGYYLD 214 (352)
T ss_dssp EEEEECTTT---BTTBCC---C----SG---GG----TCSEEEEESSSTTCCCSC--EEEEEECHH-HHHTCCCCSSTTC
T ss_pred EEEEECCcc---ccCcce---e----cc---cc----CeeEEEecCcccccCCCc--eeEEEECHH-HHHHhhCCCceee
Confidence 999999995 222111 1 11 11 2568899999944 4444 799999887 6544
Q ss_pred HH-------hCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 FS-------SFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l~-------~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+. .......++...+.++..+++.. .++++++++.++++++.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~-------~~~~~~~~~~~~~~~~~l~ 265 (352)
T 1iug_A 215 LARELKAQKEGESAWTPAINLVLAVAAVLEEV-------LPRLEEHLALKAWQNALLY 265 (352)
T ss_dssp HHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 11 11224566777788777777411 1224556666666666553
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-20 Score=216.29 Aligned_cols=222 Identities=10% Similarity=0.055 Sum_probs=169.6
Q ss_pred CeEEccCC-CCCCCCcHHHHHHHHHH----HHc--cCC-CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 616 GLIHMDVD-QSFLPIPSLVKAAIFES----FAR--QNM-SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 616 ~~IdLs~g-~p~~~~p~~v~~al~~a----l~~--y~~-~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
++|+++.| ++++++|+.+.++.... ... +.+ ..|.+ .++++++++++.+|.+ ++++++|+++++..
T Consensus 90 ~~i~l~~g~~~~~~~~~~i~~a~~~~~~~~~~~~~~~Y~~~g~~-~~~~l~~~la~~~g~~-----~~i~~~sGt~al~~ 163 (464)
T 1ibj_A 90 LLVNLDNKFDPFDAMSTPLYQTATFKQPSAIENGPYDYTRSGNP-TRDALESLLAKLDKAD-----RAFCFTSGMAALSA 163 (464)
T ss_dssp HHTCCCCSSCTTCCSSCCCCCCSBCCCSSSSCCCSCSBTTTCCH-HHHHHHHHHHHHHTCS-----EEEEESSHHHHHHH
T ss_pred eEEECCCCCCCCCCCCccHHhhhhhhhhcccccCCccccCCCCH-HHHHHHHHHHHHhCCC-----eEEEECCHHHHHHH
Confidence 46788887 77777777666655432 111 111 34555 7999999999999863 35555555778888
Q ss_pred HHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 688 LVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 688 ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
++. ++++||+|++++|+|+.+... ++..|++++.++++ |++++++++++++ ++|++++|+ ||||.+
T Consensus 164 ~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~-------d~~~l~~~i~~~t-k~v~l~~p~-NptG~v 233 (464)
T 1ibj_A 164 VTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNTT-------KLDEVAAAIGPQT-KLVWLESPT-NPRQQI 233 (464)
T ss_dssp HHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECTT-------SHHHHHHHCCSSE-EEEEECSSC-TTTCCC
T ss_pred HHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCCC-------CHHHHHHHhccCc-eEEEEeCCC-CCCCEe
Confidence 775 789999999999999999764 46689999999873 7899999998766 599999998 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc-cceeeEEE
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG-ALKFGFLV 842 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~-GlRiG~lv 842 (903)
++ +++|.++|+++|++||+||+|.. +... + .+. . +++++++|+||.++.+ |+|+||++
T Consensus 234 ~~---l~~i~~la~~~gi~livDea~~~----g~~~---~---~~~----~----~~div~~S~sK~~~g~~Gl~~G~l~ 292 (464)
T 1ibj_A 234 SD---IRKISEMAHAQGALVLVDNSIMS----PVLS---R---PLE----L----GADIVMHSATKFIAGHSDVMAGVLA 292 (464)
T ss_dssp CC---HHHHHHHHHTTTCEEEEECTTTC----TTTC---C---GGG----T----TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred ec---HHHHHHHHHHcCCEEEEECCCcc----cccC---C---hhh----c----CCEEEEECCcccccCCCCCcEEEEE
Confidence 97 89999999999999999999953 1111 0 111 1 3689999999999754 99999999
Q ss_pred eCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 843 LNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 843 ~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
++++++++.+..... ..+.+.+.|+++...|.
T Consensus 293 ~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~ 326 (464)
T 1ibj_A 293 VKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIK 326 (464)
T ss_dssp ECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHT
T ss_pred EChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchh
Confidence 997448888876552 45567888998888873
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=204.18 Aligned_cols=202 Identities=12% Similarity=0.077 Sum_probs=157.1
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+.++++.+.+++.+.+.. .......++.+.+++++++.+|.+.. + .+++|+|+++++..++.+++++||+|+++.|+
T Consensus 21 p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~-~-~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~ 97 (411)
T 3nnk_A 21 PINADPRVLRAMSSQLIG-QYDPAMTHYMNEVMALYRGVFRTENR-W-TMLVDGTSRAGIEAILVSAIRPGDKVLVPVFG 97 (411)
T ss_dssp CCCCCHHHHHHHTSCCCC-TTCHHHHHHHHHHHHHHHHHHTCCCS-E-EEEEESCHHHHHHHHHHHHCCTTCEEEEEECS
T ss_pred CCCCCHHHHHHhhccccc-cccHHHHHHHHHHHHHHHHHhCCCCC-c-EEEECCCcHHHHHHHHHHhcCCCCEEEEecCC
Confidence 455678887776653211 11223345678888999999998743 1 48888999999999999999999999999999
Q ss_pred cHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcE
Q 043334 706 NGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 706 y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~ 782 (903)
|.+ +...++..|++++.+|++. ++.+|++++++++++ ++ ++|++++|+ ||||.+++ +++|.++|+++|++
T Consensus 98 ~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~ 170 (411)
T 3nnk_A 98 RFGHLLCEIARRCRAEVHTIEVPW--GEVFTPDQVEDAVKRIRP-RLLLTVQGD-TSTTMLQP---LAELGEICRRYDAL 170 (411)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CTTHHHHHHHHTCE
T ss_pred chHHHHHHHHHHcCCeEEEEecCC--CCCCCHHHHHHHHhhCCC-eEEEEeCCC-CCcceecc---HHHHHHHHHHcCCE
Confidence 977 8889999999999999853 567899999999986 55 599999997 99999998 78899999999999
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
||+|++++. ..... . +... +..+++.|+||.++ .+.++||++++++ +++.+....
T Consensus 171 li~Dea~~~---~~~~~---~-------~~~~----~~d~~~~s~~K~l~-~~~g~g~~~~~~~-~~~~~~~~~ 225 (411)
T 3nnk_A 171 FYTDATASL---GGNPL---E-------TDVW----GLDAVSAGMQKCLG-GPSGTSPITLSAR-MEEAIRRRK 225 (411)
T ss_dssp EEEECTTTB---TTBCC---C-------TTTT----TCSEEECCSTTTTC-CCSSEEEEEECHH-HHHHHHTTC
T ss_pred EEEECCccc---CCccc---c-------hhcc----CCcEEEecCccccC-CCCceEEEEECHH-HHHHHhhcc
Confidence 999999853 11110 0 1111 35789999999853 3346899999987 888887653
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=201.64 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=159.1
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG 696 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG 696 (903)
..+|+-| +.++|+.+++++.+.+.. ....+..++.+++++++++.+|.+.+.+ .+++|+|+++++..++.+++++|
T Consensus 20 ~~~~~pg--p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~~~~-~i~~~~ggt~al~~~~~~~~~~g 95 (376)
T 3f0h_A 20 MLNFTVG--PVMSSEEVRAIGAEQVPY-FRTTEFSSTMLENEKFMLEYAKAPEGSK-AVFMTCSSTGSMEAVVMNCFTKK 95 (376)
T ss_dssp CEECSSS--SCCCCHHHHHHHTSCCCC-CSSHHHHHHHHHHHHHHHHHHTCCTTCE-EEEESSCHHHHHHHHHHHHCCTT
T ss_pred ceeecCC--CCCCcHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCCce-EEEEcCChhHHHHHHHHhccCCC
Confidence 4455444 356788888877664322 1122344677889999999999875423 56669999999999999999999
Q ss_pred CeEEEcCCCcHHHH--HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHH
Q 043334 697 GTLCFPAGSNGNYV--SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILT 774 (903)
Q Consensus 697 D~Vlv~~P~y~~~~--~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ 774 (903)
|+|+++.|+|.++. ..+...|++++.++.+. ++.+|++++++.+++++ +++++++|+ ||||.+++ +++|.+
T Consensus 96 d~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~ 168 (376)
T 3f0h_A 96 DKVLVIDGGSFGHRFVQLCEIHEIPYVALKLEH--GKKLTKEKLYEYDNQNF-TGLLVNVDE-TSTAVLYD---TMMIGE 168 (376)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTCCEEEEECCT--TCCCCHHHHHTTTTSCC-CEEEEESEE-TTTTEECC---HHHHHH
T ss_pred CeEEEEeCChhhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHhhccCc-eEEEEeccc-CCcceecC---HHHHHH
Confidence 99999999776644 34677899999999864 57799999999887766 589999998 99999999 889999
Q ss_pred HHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHH
Q 043334 775 VCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 775 ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~ 853 (903)
+|+++|++||+|++|+.... .. . .. .. +..+++.|+||.++ .+| +|+++++++ +++.+.
T Consensus 169 l~~~~~~~li~D~~~~~~~~---~~---~----~~---~~----~~d~~~~s~~K~l~~~~G--~g~~~~~~~-~~~~~~ 228 (376)
T 3f0h_A 169 FCKKNNMFFVCDCVSAFLAD---PF---N----MN---EC----GADVMITGSQKVLACPPG--ISVIVLAPR-GVERVE 228 (376)
T ss_dssp HHHHTTCEEEEECTTTTTTS---CC---C----HH---HH----TCSEEEEETTTTTCCCSS--CEEEEECHH-HHHHHH
T ss_pred HHHHcCCEEEEEcCccccCc---cc---c----cc---cc----CccEEEecCcccccCCCc--eEEEEECHH-HHHHhh
Confidence 99999999999999864321 10 1 11 11 24689999999998 666 688888887 888887
Q ss_pred hC
Q 043334 854 SF 855 (903)
Q Consensus 854 ~~ 855 (903)
..
T Consensus 229 ~~ 230 (376)
T 3f0h_A 229 KS 230 (376)
T ss_dssp TC
T ss_pred cC
Confidence 53
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=204.69 Aligned_cols=216 Identities=16% Similarity=0.102 Sum_probs=163.0
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
..+++|||+.+.+ .++++.+++++.+....|...+|..+.++++++++++++| + . . +|++|+|+++++..++.++
T Consensus 5 ~~~~~id~~~~~~-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~g-~-~-~-~v~~~~~gt~a~~~al~~~ 79 (356)
T 1v72_A 5 SRPPALGFSSDNI-AGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFE-R-D-V-EVFLVPTGTAANALCLSAM 79 (356)
T ss_dssp -CCCCCBCSCGGG-CCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHT-S-C-C-EEEEESCHHHHHHHHHHTS
T ss_pred CCCceEeeccCCc-cCCCHHHHHHHHhhccCcccccccchHHHHHHHHHHHHhC-C-C-C-cEEEeCCccHHHHHHHHHh
Confidence 3457899998754 4578889999888754334456667788999999999998 3 2 2 6999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHH--HHHc--CCEEEEecCCCCCCcccCHHHHHH-HhhcC------CCcEEEEECCCCCCcc
Q 043334 693 ILEGGTLCFPAGSNGNYVSA--ARFL--KANIVNIPTESEVGFKMTEKTLVT-ILETV------KKPWVYISGPTINPTG 761 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~--~~~~--G~~vv~v~~~~~~~f~ld~~~L~~-~l~~~------~~~~vil~~P~~NPTG 761 (903)
++|||.|+++.|+|..+... +... |++++.+|.+ ++.+|++++++ .+++. ..++|++++|+ | ||
T Consensus 80 ~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~-tG 154 (356)
T 1v72_A 80 TPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQPACVSITQAT-E-VG 154 (356)
T ss_dssp CCTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-T-TS
T ss_pred cCCCCEEEEcCccchhhhhchHHHHHhCCcEEEEecCC---CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCC-C-CC
Confidence 99999999999999887655 6666 9999999874 36799999999 88751 23589999986 7 99
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc--cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLE--FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~--f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
.+++.+++++|.++|+++|++||+|++|..+. +.+... ..+. +... ..+++.|+||. + .|+|
T Consensus 155 ~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~------~~~~-~~~~-----~d~~~~s~sK~-g---~~~G 218 (356)
T 1v72_A 155 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP------AEMT-WKAG-----VDALSFGATKN-G---VLAA 218 (356)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT------TTTT-GGGT-----CCEEEECCGGG-T---CSSC
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH------HHhh-hhhc-----CCEEEEecccC-C---CcCc
Confidence 99999999999999999999999999996422 222221 0010 1111 12345699997 3 3677
Q ss_pred --EEEeCcHHHHHHHHhC
Q 043334 840 --FLVLNHPQLVDAFSSF 855 (903)
Q Consensus 840 --~lv~~~~~li~~l~~~ 855 (903)
|++++++ +++.+...
T Consensus 219 ~g~~~~~~~-~~~~~~~~ 235 (356)
T 1v72_A 219 EAIVLFNTS-LATEMSYR 235 (356)
T ss_dssp EEEEESSGG-GHHHHHHH
T ss_pred cEEEEECHH-HHhhHHHH
Confidence 8888766 77776543
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=205.49 Aligned_cols=256 Identities=6% Similarity=0.001 Sum_probs=182.4
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..+...+|++.|. +.++ .++.+.+++.+.+.++.. ..+..++++++++.+++.+|. + +|++|+|+++++.
T Consensus 54 ~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~-~v~~~~ggteA~~ 128 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFA----E-RVLFMNSGTEANE 128 (420)
T ss_dssp TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSC----S-EEEEESSHHHHHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCC----C-eEEEeCCHHHHHH
Confidence 4567789998763 3333 578899999998866432 123457889999999998762 3 8999999999999
Q ss_pred HHHHHhcc-------CCC-eEEEcCCCcHHHH-HHHHHcCCE------------EEEecCCCCCCcccCHHHHHHHhhcC
Q 043334 687 KLVLCCIL-------EGG-TLCFPAGSNGNYV-SAARFLKAN------------IVNIPTESEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 687 ~ll~~l~~-------pGD-~Vlv~~P~y~~~~-~~~~~~G~~------------vv~v~~~~~~~f~ld~~~L~~~l~~~ 745 (903)
.++.++.. +|+ .|++++|+|..+. ......|.+ +..+|. .|+++|++.++++
T Consensus 129 ~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-------~d~~~le~~i~~~ 201 (420)
T 2pb2_A 129 TAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPF-------NDLHAVKAVMDDH 201 (420)
T ss_dssp HHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECT-------TCHHHHHHHCCTT
T ss_pred HHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecC-------CCHHHHHHHhccC
Confidence 99998876 774 9999999997654 344555543 445543 3799999999865
Q ss_pred CCcEEEEECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
+ ++|++++|+ ||+| .+++.+++++|.++|+++|++||+||+|.++.+.+... . .....-.+ .++
T Consensus 202 ~-~~vi~~p~~-~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~---~----~~~~~~~~----dii-- 266 (420)
T 2pb2_A 202 T-CAVVVEPIQ-GEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLF---A----YMHYGVTP----DIL-- 266 (420)
T ss_dssp E-EEEEECSEE-TTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---H----HHHHTCCC----SEE--
T ss_pred c-eEEEEeCCc-CCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHH---H----HHhcCCCC----CeE--
Confidence 4 466666664 8888 46999999999999999999999999998766655431 1 12222122 233
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhC--CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSF--PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~--~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
||||.++ +|+|+||++++++ +++.+... ..+.+.+.+.|.++.++|+.-.. +.+.+.+.++++.+.++.+
T Consensus 267 -t~sK~l~-~G~~iG~~~~~~~-l~~~l~~~~~~~t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~ 338 (420)
T 2pb2_A 267 -TSAKALG-GGFPVSAMLTTQE-IASAFHVGSHGSTYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQ 338 (420)
T ss_dssp -EECGGGG-TTSCCEEEEECHH-HHTTCC----CCEECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHH
T ss_pred -Eeccccc-CCCceEEEEEhHH-HHHhhcCCCcCcccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 7899998 8999999999987 87776552 23567789999999888852111 2344555555555555443
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-19 Score=201.00 Aligned_cols=199 Identities=11% Similarity=0.054 Sum_probs=152.6
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEE-ecCchHHHHHHHHHHhccCCCeEEEcCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFI-YADCSQSLFNKLVLCCILEGGTLCFPAG 704 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~-vt~Gs~~al~~ll~~l~~pGD~Vlv~~P 704 (903)
+.+.++.+.+++.+.. .+.......+..+.+++++++++|.+.+ +++ +++|+++++..++.++++|||+|++++|
T Consensus 19 p~~~~~~v~~a~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~---~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~ 94 (416)
T 3isl_A 19 PVEVDPRVLRVMSTPV-VGQFDPAFTGIMNETMEMLRELFQTKNR---WAYPIDGTSRAGIEAVLASVIEPEDDVLIPIY 94 (416)
T ss_dssp SCCCCHHHHHHTTSCC-CCTTSHHHHHHHHHHHHHHHHHTTCCCS---EEEEEESCHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CcCcCHHHHHHhcccC-CCCccHHHHHHHHHHHHHHHHHhCCCCC---cEEEecCcHHHHHHHHHHHhcCCCCEEEEecC
Confidence 3445666666554421 0111222355678899999999997643 555 8888999999999999999999999999
Q ss_pred CcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh-cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCc
Q 043334 705 SNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE-TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781 (903)
Q Consensus 705 ~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~-~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i 781 (903)
+|.. +...++..|++++.++++. ++.+|+++++++++ +++ ++|++++|+ ||||.+++ +++|.++|+++|+
T Consensus 95 ~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~ 167 (416)
T 3isl_A 95 GRFGYLLTEIAERYGANVHMLECEW--GTVFDPEDIIREIKKVKP-KIVAMVHGE-TSTGRIHP---LKAIGEACRTEDA 167 (416)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CHHHHHHHHHTTC
T ss_pred CcccHHHHHHHHhcCCeeEEEecCC--CCCCCHHHHHHHHhhCCC-cEEEEEccC-CCCceecC---HHHHHHHHHHcCC
Confidence 9997 7778899999999999975 35689999999998 466 599999998 99999999 8889999999999
Q ss_pred EEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 782 RVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 782 ~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+||+|++|+.... .. + +... +..+++.|+||.++ .+.++||++++++ +++.+..
T Consensus 168 ~li~D~a~~~~~~---~~---~-------~~~~----~~d~~~~s~~K~l~-g~~g~g~~~~~~~-~~~~~~~ 221 (416)
T 3isl_A 168 LFIVDAVATIGGC---EV---K-------VDEW----KIDAAIGGTQKCLS-VPSGMAPITYNER-VADVIAA 221 (416)
T ss_dssp EEEEECTTTTTTS---CC---C-------TTTT----TCSEEECCSSSTTC-CCSSEEEEEECHH-HHHHHHT
T ss_pred EEEEECCccccCC---Cc---c-------hhhc----CCCEEEecCccccC-CCCCeEEEEECHH-HHHHhhc
Confidence 9999999852211 10 0 1111 35789999999743 3445899999987 8888874
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=202.36 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=176.0
Q ss_pred CCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCC
Q 043334 625 SFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAG 704 (903)
Q Consensus 625 p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P 704 (903)
.+.++++.+.+++.+.... ....+..+..+++++++++++|.+.. + +|++|+|+++++..++.+++++||+|+++.+
T Consensus 30 ~p~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~l~~~la~~~~~~~~-~-~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~ 106 (393)
T 3kgw_A 30 GPSNLAPRVLAAGSLRMIG-HMQKEMLQIMEEIKQGIQYVFQTRNP-L-TLVVSGSGHCAMETALFNLLEPGDSFLTGTN 106 (393)
T ss_dssp SCCCCCHHHHHHTTCCCCC-TTSHHHHHHHHHHHHHHHHHHTCCCS-E-EEEESCCTTTHHHHHHHHHCCTTCEEEEEES
T ss_pred CCCCCCHHHHHHhcccccC-cccHHHHHHHHHHHHHHHHHhCCCCC-c-EEEEeCCcHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4456788888776553211 11222345677888889988887632 2 5999999999999999999999999999999
Q ss_pred CcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCc
Q 043334 705 SNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781 (903)
Q Consensus 705 ~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i 781 (903)
+|.. +...++..|++++.++++. ++.+|++++++.+++ ++ ++|++++|+ ||||.+++ +++|.++|+++|+
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~d~~~l~~~i~~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~ 179 (393)
T 3kgw_A 107 GIWGMRAAEIADRIGARVHQMIKKP--GEHYTLQEVEEGLAQHKP-VLLFLVHGE-SSTGVVQP---LDGFGELCHRYQC 179 (393)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECCT--TCCCCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CTTHHHHHHHTTC
T ss_pred CchhHHHHHHHHHcCCceEEEeCCC--CCCCCHHHHHHHHhhCCC-cEEEEeccC-Ccchhhcc---HHHHHHHHHHcCC
Confidence 8853 4677889999999999865 346899999999987 66 599999997 99999999 7889999999999
Q ss_pred EEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHhCCC---
Q 043334 782 RVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSFPG--- 857 (903)
Q Consensus 782 ~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~~~~--- 857 (903)
+||+||+|+. ..... . +... +..+++.|+||.+ |.+| +||++++++ +++.+.....
T Consensus 180 ~li~De~~~~---g~~~~---~-------~~~~----~~d~~~~s~sK~~~~~~g--~g~~~~~~~-~~~~~~~~~~~~~ 239 (393)
T 3kgw_A 180 LLLVDSVASL---GGVPI---Y-------MDQQ----GIDIMYSSSQKVLNAPPG--ISLISFNDK-AKYKVYSRKTKPV 239 (393)
T ss_dssp EEEEECTTTT---TTSCC---C-------TTTT----TCCEEEEESSSTTCCCSS--CEEEEECHH-HHHHHHTCSSCCS
T ss_pred EEEEECCccc---cCccc---c-------hhhc----CCCEEEecCcccccCCCc--eeEEEECHH-HHHHHhccCCCCC
Confidence 9999999852 11110 0 0111 3578899999977 4444 899999987 8888875431
Q ss_pred ----------------------CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 858 ----------------------LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 858 ----------------------~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
...++...+.++..++.... +..++++++.++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~------~~~~~~~~~~~~~~~~~l~ 300 (393)
T 3kgw_A 240 SFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIA------EQGLENCWRRHREATAHLH 300 (393)
T ss_dssp CSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHHHHHH
T ss_pred ceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHH
Confidence 23456677777767763101 1224555666666665543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=205.40 Aligned_cols=241 Identities=13% Similarity=0.078 Sum_probs=169.2
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHcc---CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQ---NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y---~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...+|++.|.+ +++ .++.+.+++.+.+.++ ....|..++++++++++++.++.... + ++++|+|+++++
T Consensus 40 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~-~v~~~~ggsea~ 117 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGT-H-KIWFGHSGSDAN 117 (439)
T ss_dssp TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTT-E-EEEEESSHHHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC-C-EEEEeCCHHHHH
Confidence 45677999998877 344 6889999999988764 23556788999999999998765441 2 899999999999
Q ss_pred HHHHHHh--ccCCCeEEEcCCCcHHHHHHHHHcCCE-E--------------EEecCCCCCCccc-----CHHHHHHHhh
Q 043334 686 NKLVLCC--ILEGGTLCFPAGSNGNYVSAARFLKAN-I--------------VNIPTESEVGFKM-----TEKTLVTILE 743 (903)
Q Consensus 686 ~~ll~~l--~~pGD~Vlv~~P~y~~~~~~~~~~G~~-v--------------v~v~~~~~~~f~l-----d~~~L~~~l~ 743 (903)
..++..+ ..+++.|++.+|+|..+...+...+.. . ..+|... .+.. |+++|+++++
T Consensus 118 ~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~ 195 (439)
T 3dxv_A 118 EAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRP--YRNDPTGDAILTLLTEKLA 195 (439)
T ss_dssp HHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSC--BTTBTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCc--ccccccHHHHHHHHHHHHH
Confidence 9998875 346788998899886554444333322 1 2233221 1111 6899999984
Q ss_pred ---cCCCcEEEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCC
Q 043334 744 ---TVKKPWVYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSF 819 (903)
Q Consensus 744 ---~~~~~~vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~ 819 (903)
+.+. .+++++|.+||+|.+.+ .+.+++|.++|++||++||+||+|.++.+.+... ........+
T Consensus 196 ~~~~~~~-~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~-------~~~~~~~~~---- 263 (439)
T 3dxv_A 196 AVPAGSI-GAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLH-------CFEHEGFVP---- 263 (439)
T ss_dssp TSCTTCE-EEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSS-------GGGGTTCCC----
T ss_pred hcCCCCE-EEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhh-------HHHhcCCCC----
Confidence 2333 44444555477887664 5559999999999999999999998765444321 112222211
Q ss_pred ceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 820 NVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 820 ~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
.++ ||||+++ +|+|+||++++++ +++.+.... .+. .+.++|.++.++|+
T Consensus 264 di~---s~sK~~~-~G~riG~~~~~~~-~~~~~~~~~~~~t~-~~~~~~~aa~aal~ 314 (439)
T 3dxv_A 264 DIL---VLGKGLG-GGLPLSAVIAPAE-ILDCASAFAMQTLH-GNPISAAAGLAVLE 314 (439)
T ss_dssp SEE---EECGGGG-TTSCCEEEEEEHH-HHTSCSSSSCCTTT-TCHHHHHHHHHHHH
T ss_pred CEE---EEcchhc-CCcceEEEEECHH-HHhhhcCCCcCCCc-ccHHHHHHHHHHHH
Confidence 222 9999998 6999999999887 888877653 356 88999999998884
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=198.53 Aligned_cols=232 Identities=12% Similarity=0.038 Sum_probs=156.2
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI 693 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~ 693 (903)
+..+|+|+.+.+.+ +++.+++++.+.... ...++..+....+++.+++++|.+ ++++++|+++++..++.+++
T Consensus 2 ~~~~i~~~~~~~~~-p~~~~~~a~~~~~~~-~~~y~~~~~~~~l~~~la~~~g~~-----~~~~~~~gt~a~~~~~~~~~ 74 (347)
T 1jg8_A 2 PHMMIDLRSDTVTK-PTEEMRKAMAQAEVG-DDVYGEDPTINELERLAAETFGKE-----AALFVPSGTMGNQVSIMAHT 74 (347)
T ss_dssp ---CEECSCGGGCC-CCHHHHHHHHTCCCC-CGGGTCCHHHHHHHHHHHHHHTCS-----EEEEESCHHHHHHHHHHHHC
T ss_pred CceEEEeccccCCC-CCHHHHHHHhcCCCC-CcccCCChHHHHHHHHHHHHhCCc-----eEEEecCcHHHHHHHHHHhc
Confidence 35689999999887 567788877654311 011222223334455555556653 35556666677888888999
Q ss_pred cCCCeEEEcCCCcHHHH---HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCc-ccCC
Q 043334 694 LEGGTLCFPAGSNGNYV---SAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPT-GLLY 764 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~---~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPT-G~v~ 764 (903)
+|||+|++++|+|.... ..++..|++++.+ .+ .++.+|++++++++++. ..++|++++|+ ||| |.++
T Consensus 75 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~--~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~-npt~G~~~ 150 (347)
T 1jg8_A 75 QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PG--KNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTH-NRSGGRVV 150 (347)
T ss_dssp CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CE--ETTEECHHHHHHHSCCSCTTSCCEEEEEEESSB-TTTTSBCC
T ss_pred CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cC--CCCccCHHHHHHHhccccccccCceEEEEeccc-cccCCccC
Confidence 99999999999997643 3678899999998 43 34668999999998751 23589999998 999 9999
Q ss_pred CHHHHHHHHHHHHhCCcEEEEecCCCCC--ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE-E
Q 043334 765 SNKEIENILTVCAKYGARVVIDTAFSGL--EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF-L 841 (903)
Q Consensus 765 s~eel~eI~~ia~k~~i~VI~DeaY~~l--~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~-l 841 (903)
+.+++++|+++|+++|++||+|++|... .+.+.. ..+.. ... +. ++.|+||.++++ +|| +
T Consensus 151 ~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~-----~~~~~---~~~----d~--~~~s~sK~l~~~---~G~~~ 213 (347)
T 1jg8_A 151 PLENIKEICTIAKEHGINVHIDGARIFNASIASGVP-----VKEYA---GYA----DS--VMFCLSKGLCAP---VGSVV 213 (347)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCC-----HHHHH---HTC----SE--EEEESSSTTCCS---SCEEE
T ss_pred cHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCC-----hHHhc---ccc----cE--EEEecccccCCC---ceEEE
Confidence 9999999999999999999999987311 112211 11111 111 22 345899999743 685 5
Q ss_pred EeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 842 VLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 842 v~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
+++++ +++.+..++. ....+...+.++...|.
T Consensus 214 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (347)
T 1jg8_A 214 VGDRD-FIERARKARKMLGGGMRQAGVLAAAGIIALT 249 (347)
T ss_dssp EECHH-HHHHHHHHHHHHTCCCSSTHHHHHHHHHHHH
T ss_pred EcCHH-HHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Confidence 56655 8877665432 23345566666666673
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=205.50 Aligned_cols=250 Identities=14% Similarity=0.058 Sum_probs=174.3
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-c----CCC---CCchH--HHHH-HHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-Q----NMS---ESEID--VTPS-IQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y----~~~---~G~~~--lr~a-la~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.|+++.|.+++ ++.+.+++.+.+.+ + ... .|.+. +++. .++++++++|.+.. +|++++|+.
T Consensus 23 ~~~i~~~~~~~~~--~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~~~---~i~~~sGt~- 96 (407)
T 2dkj_A 23 REGLELIASENFV--SKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAAWA---NVQPHSGSQ- 96 (407)
T ss_dssp HTSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHH-
T ss_pred hcceeeccCCCCC--CHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCCcc---eEEecchHH-
Confidence 4689999999887 78899998887753 2 111 14443 3443 34688888887633 688888876
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHH---HHHHHHcCC--EEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNY---VSAARFLKA--NIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTI 757 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~---~~~~~~~G~--~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~ 757 (903)
++..++.+++++||+|+++.|+|+.+ ...++..|. .++++++++ +++.+|++++++.+++ ++ ++|++++|+
T Consensus 97 a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~l~~~~~-~~v~~~~p~- 173 (407)
T 2dkj_A 97 ANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRP-DTELIDLEEVRRLALEHRP-KVIVAGASA- 173 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCT-TTSSCCHHHHHHHHHHHCC-SEEEECCSS-
T ss_pred HHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCc-ccCccCHHHHHHHHhhcCC-eEEEEeccc-
Confidence 99999999999999999999999887 344455565 555555443 3578999999999975 55 588888998
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
|| .+.+ +++|.++|+++|++||+||+|+. +.+.+... .. +. ..+++++|+||. ++|+
T Consensus 174 ~~--~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~------~~---~~------~~di~~~s~sK~--l~g~ 231 (407)
T 2dkj_A 174 YP--RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGLHP------NP---LP------YAHVVTSTTHKT--LRGP 231 (407)
T ss_dssp CC--SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSC------CC---TT------TCSEEEEESSGG--GCCC
T ss_pred cC--CCCC---HHHHHHHHHHcCCEEEEEccccccccccCccC------Cc---cc------cccEEEEecccc--CCCC
Confidence 98 4555 88999999999999999999976 44444321 00 11 257899999995 4699
Q ss_pred eeeEEEeCcHHHHHHHHhCCC---CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 837 KFGFLVLNHPQLVDAFSSFPG---LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~~---~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
|+||++++++++++.+..... ..+++.....++..+|.. . ...+++++++.++++++.+
T Consensus 232 ~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~--~----~~~~~~~~~~~~~~~~~~l 293 (407)
T 2dkj_A 232 RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFE--A----LQPEFKEYSRLVVENAKRL 293 (407)
T ss_dssp SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHH--H----HSHHHHHHHHHHHHHHHHH
T ss_pred CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHH--H----HHhhHHHHHHHHHHHHHHH
Confidence 999999994338888876542 233333333355566631 1 0134555666666666554
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=198.11 Aligned_cols=233 Identities=7% Similarity=0.037 Sum_probs=172.6
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..+...+|++.| .+.++ .++.+.+++.+.+.++. ...+..+.++++++++++.+| ++ +|++|+|+++++.
T Consensus 33 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~----~~-~v~~~~gg~ea~~ 107 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASA----LE-RVFFTNSGTESIE 107 (395)
T ss_dssp TTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHT----CS-EEEEESSHHHHHH
T ss_pred CCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhcC----CC-eEEEeCCHHHHHH
Confidence 456778999877 45555 57899999999886632 233456788999999999887 23 8999999999999
Q ss_pred HHHHHhc-------cCCCeEEEcCCCcHHHHHHHHHcC-------------CEEEEecCCCCCCcccCHHHHHHHhhcCC
Q 043334 687 KLVLCCI-------LEGGTLCFPAGSNGNYVSAARFLK-------------ANIVNIPTESEVGFKMTEKTLVTILETVK 746 (903)
Q Consensus 687 ~ll~~l~-------~pGD~Vlv~~P~y~~~~~~~~~~G-------------~~vv~v~~~~~~~f~ld~~~L~~~l~~~~ 746 (903)
.++..+. .+||.|++.+|+|..+...+...+ .++..++. .|+++|++++++++
T Consensus 108 ~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~l~~~l~~~~ 180 (395)
T 3nx3_A 108 GAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKY-------NDISSVEKLVNEKT 180 (395)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECT-------TCHHHHHTTCCTTE
T ss_pred HHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCC-------CCHHHHHHhccCCe
Confidence 9888775 357999999999976554443332 34555543 27999999987654
Q ss_pred CcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEc
Q 043334 747 KPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG 825 (903)
Q Consensus 747 ~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~ 825 (903)
++++++.++ ||+|.+ ++.+++++|.++|++||+++|+||+|.++...+... . ....+ ...-+.
T Consensus 181 -~~v~~~~~~-~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~---~----~~~~~-------~~~d~~ 244 (395)
T 3nx3_A 181 -CAIILESVQ-GEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFF---A----YEHAQ-------ILPDIM 244 (395)
T ss_dssp -EEEEEESEE-CTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGGGT-------CCCSEE
T ss_pred -EEEEEeCcc-CCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcch---h----HHhcC-------CCCCEE
Confidence 466666555 676665 789999999999999999999999998765444321 1 11111 122245
Q ss_pred cCchhcccccceeeEEEeCcHHH-HHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 826 GLSLKMLTGALKFGFLVLNHPQL-VDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 826 S~SK~~g~~GlRiG~lv~~~~~l-i~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
||||.++. |+|+||++++++ + ++.+.... ...+.+.+.|.++.++|+
T Consensus 245 t~sK~~~~-G~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~aal~ 294 (395)
T 3nx3_A 245 TSAKALGC-GLSVGAFVINQK-VASNSLEAGDHGSTYGGNPLVCAGVNAVFE 294 (395)
T ss_dssp EECGGGTT-TSCCEEEEECHH-HHHHHSCTTCCSSCBSCCHHHHHHHHHHHH
T ss_pred EecccccC-CCceEEEEEchh-hhhhhcCCcccCCCCCCCHHHHHHHHHHHH
Confidence 89999984 999999999988 7 88876643 267788999999999884
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=202.24 Aligned_cols=264 Identities=12% Similarity=0.083 Sum_probs=177.2
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...+|+..|. +.++ .++.+.+++.+.+.+.....+..+....+++.+++.++ . ++ +|++|+|+++++..+
T Consensus 52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~--~~-~v~~~~sGsea~~~a 127 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMP-A--LD-KVRFVNSGTEAVMTT 127 (434)
T ss_dssp TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHCT-T--CS-EEEEESSHHHHHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHhCC-C--CC-EEEEeCchHHHHHHH
Confidence 4677889997664 4455 58899999999887643333345667788888888776 2 34 899999999999999
Q ss_pred HHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCE-EEEecCCCCCCcc------------cCHHHHHHHhhcC-CCcEEEE
Q 043334 689 VLCCIL--EGGTLCFPAGSNGNYVSAARFLKAN-IVNIPTESEVGFK------------MTEKTLVTILETV-KKPWVYI 752 (903)
Q Consensus 689 l~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~-vv~v~~~~~~~f~------------ld~~~L~~~l~~~-~~~~vil 752 (903)
+..+.. +++.|++.+|+|..+...+...+.. ...+......++. -|+++++++++.. ....+++
T Consensus 128 i~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 207 (434)
T 3l44_A 128 IRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAIL 207 (434)
T ss_dssp HHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEE
T ss_pred HHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEE
Confidence 887765 6789999999997655443332221 1111110001110 1789999988742 1236777
Q ss_pred ECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
++|++|++|.+. +.+++++|.++|++||++||+||+|.++ ..+... ......-.+ -+.||||.+
T Consensus 208 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~-------~~~~~~~~~-------di~t~sK~~ 272 (434)
T 3l44_A 208 VEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGG-------AQDLLGVTP-------DLTALGKVI 272 (434)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSC-------HHHHHTCCC-------SEEEEEGGG
T ss_pred EcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccH-------HHHHcCCCC-------Ceeehhhhh
Confidence 778745666555 8899999999999999999999999877 444321 122222221 145899999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSF-----PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~-----~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+ +|+|+||++++++ +++.+... ..+++.+.+.|.++.++|+.-.. +.+.+.+.+.++.++++.
T Consensus 273 ~-~G~~iG~~~~~~~-i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 340 (434)
T 3l44_A 273 G-GGLPIGAYGGKKE-IMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGI 340 (434)
T ss_dssp G-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHH
T ss_pred c-CCcCeeeEEEcHH-HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH
Confidence 8 8999999999887 88888762 23678899999999998852111 233444444444444443
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.6e-19 Score=201.81 Aligned_cols=215 Identities=13% Similarity=0.133 Sum_probs=153.0
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG 696 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG 696 (903)
.+|+..+.+..+.++.+.+++......|....+..++++++++++ |. + ++++|+|+++++..++.+++++|
T Consensus 44 ylD~~~~~~~~~~~~~~~~a~~~~~~~y~~~~~~~~l~~~la~~~----~~--~---~~~~~~~gt~a~~~al~~l~~~g 114 (456)
T 2ez2_A 44 YIDLLTDSGTNAMSDKQWAGMMMGDEAYAGSENFYHLERTVQELF----GF--K---HIVPTHQGRGAENLLSQLAIKPG 114 (456)
T ss_dssp SEECSCSSSCCCCCHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHH----CC--S---EEEEESSHHHHHHHHHHHHCCTT
T ss_pred eeeeccccCCccCCHHHHHHhhcchhhcccChhHHHHHHHHHHHh----CC--C---cEEEeCCcHHHHHHHHHHhCCCC
Confidence 344444443344566666665422112333334455666665554 43 2 68999999999999999999999
Q ss_pred CeEEEcCCCc-HHHHHHHHHcCCEEEEecCCCC----C----CcccCHHHHHHHhhcCC---CcEEEEECCCCC-CcccC
Q 043334 697 GTLCFPAGSN-GNYVSAARFLKANIVNIPTESE----V----GFKMTEKTLVTILETVK---KPWVYISGPTIN-PTGLL 763 (903)
Q Consensus 697 D~Vlv~~P~y-~~~~~~~~~~G~~vv~v~~~~~----~----~f~ld~~~L~~~l~~~~---~~~vil~~P~~N-PTG~v 763 (903)
| +++.|+| +.+...++..|++++.++++.+ + +|.+|+++|++++++++ .++|++++|+ | |||.+
T Consensus 115 d--i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~-n~ptG~~ 191 (456)
T 2ez2_A 115 Q--YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTV-NLAGGQP 191 (456)
T ss_dssp C--EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSB-TTTTSBC
T ss_pred C--EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccC-CCCCCcc
Confidence 9 7889999 8889999999999999998732 2 37899999999998655 2589999998 8 99999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCC----------CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSG----------LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT 833 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~----------l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~ 833 (903)
++.+++++|.++|+++|++||+||+|+. +.|.+.. ..+....+...+ .++++ |++|.. +
T Consensus 192 ~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~-----~~~~~~~~~~~~----d~~~~-S~kk~~-~ 260 (456)
T 2ez2_A 192 VSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKS-----IAEIVHEMFSYA----DGCTM-SGKKDC-L 260 (456)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSC-----HHHHHHHHHTTC----SEEEE-ETTTTT-C
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcc-----hhhhhhhhcccC----CEEEE-eCcccC-C
Confidence 9999999999999999999999999975 4455432 111111112221 34555 777865 4
Q ss_pred ccceeeEEEeCcHHHHHHHHhC
Q 043334 834 GALKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 834 ~GlRiG~lv~~~~~li~~l~~~ 855 (903)
+| |.||++++++++++.+...
T Consensus 261 ~~-~gG~~~~~~~~~~~~~~~~ 281 (456)
T 2ez2_A 261 VN-IGGFLCMNDDEMFSSAKEL 281 (456)
T ss_dssp CS-SCEEEEESCHHHHHHHHHH
T ss_pred CC-ceeEEEECCHHHHHHHHHH
Confidence 77 8999999544488777653
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=201.29 Aligned_cols=223 Identities=10% Similarity=0.021 Sum_probs=164.2
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-c
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-I 693 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~ 693 (903)
.+.+||+.|.++++ +.+.+++.+.+....+.. .+....+++.+++++|.+ ++++++|+++++..++.++ +
T Consensus 30 ~~~id~~~~~~~~~--~~v~~a~~~~~~~~~y~~--~~~~~~l~~~la~~~~~~-----~~v~~~~Gt~a~~~~l~~~~~ 100 (399)
T 2oga_A 30 VPFLDLKAAYEELR--AETDAAIARVLDSGRYLL--GPELEGFEAEFAAYCETD-----HAVGVNSGMDALQLALRGLGI 100 (399)
T ss_dssp BCSCCHHHHHHHTH--HHHHHHHHHHHHHTCCSS--SHHHHHHHHHHHHHTTSS-----EEEEESCHHHHHHHHHHHTTC
T ss_pred CcccccCcCCCCCC--HHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHHHCCC-----eEEEecCHHHHHHHHHHHhCC
Confidence 46789998887654 788888888775422211 123344445555555653 3455555589999999999 8
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
++||+|+++.|+|+.+...++..|++++.+++++ ++|.+|++++++.+++++ ++|+ |+ ||||.+.+ +++|.
T Consensus 101 ~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~-~~v~---~~-n~tG~~~~---l~~i~ 171 (399)
T 2oga_A 101 GPGDEVIVPSHTYIASWLAVSATGATPVPVEPHE-DHPTLDPLLVEKAITPRT-RALL---PV-HLYGHPAD---MDALR 171 (399)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCS-SSSSBCHHHHHHHCCTTE-EEEC---CB-CGGGCCCC---HHHHH
T ss_pred CCcCEEEECCCccHHHHHHHHHCCCEEEEEecCC-CCCCcCHHHHHHhcCCCC-eEEE---Ee-CCcCCccC---HHHHH
Confidence 9999999999999999999999999999999975 357899999999997654 3443 77 99999987 88899
Q ss_pred HHHHhCCcEEEEecCCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
++|+++|++||+||+|+.. .+++.. +... ..+++.|+ ||.+|.+| |+||++++++++++
T Consensus 172 ~l~~~~~~~li~Dea~~~g~~~~~~~------------~~~~-----~di~~~S~~~sK~~~~~G-~~g~~~~~~~~~~~ 233 (399)
T 2oga_A 172 ELADRHGLHIVEDAAQAHGARYRGRR------------IGAG-----SSVAAFSFYPGKNLGCFG-DGGAVVTGDPELAE 233 (399)
T ss_dssp HHHHHHTCEECEECTTCTTCEETTEE------------TTCT-----TCEEEEECCTTSSSCCSS-CCEEEEESCHHHHH
T ss_pred HHHHHcCCEEEEECcccccCccCCee------------cccc-----cCEEEEeCCCCccCCcCC-ceEEEEeCCHHHHH
Confidence 9999999999999999754 233221 1111 25788998 89999879 99999998555887
Q ss_pred HHHhCCC--------------CCCCcHHHHHHHHHHH
Q 043334 851 AFSSFPG--------------LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 851 ~l~~~~~--------------~~~~s~~~Q~aa~~~L 873 (903)
.+..... ...++...+.++...+
T Consensus 234 ~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l 270 (399)
T 2oga_A 234 RLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRL 270 (399)
T ss_dssp HHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCccccccccccccCCCcCHHHHHHHHHHH
Confidence 7765321 1234566666666666
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.8e-19 Score=203.48 Aligned_cols=266 Identities=10% Similarity=0.089 Sum_probs=183.4
Q ss_pred CCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccC--CC-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 613 PNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQN--MS-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 613 ~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~--~~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+...+|++.|. ++++ .++.+.+++.+.+.++. .. .+..+++.++++.+++.++... + +|++|+|+++++.
T Consensus 48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~--~-~v~~~~ggsea~~ 124 (449)
T 3a8u_X 48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNL--N-HVFFTDSGSECAL 124 (449)
T ss_dssp TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTE--E-EEEEESSHHHHHH
T ss_pred CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCC--C-EEEEcCcHHHHHH
Confidence 456688987554 3443 37899999998876642 11 4566778899999998876543 3 8999999999999
Q ss_pred HHHHHhcc--------CCCeEEEcCCCcHHHH-HHHHHcCC------------EEEEecCCC--CCCc-ccC--------
Q 043334 687 KLVLCCIL--------EGGTLCFPAGSNGNYV-SAARFLKA------------NIVNIPTES--EVGF-KMT-------- 734 (903)
Q Consensus 687 ~ll~~l~~--------pGD~Vlv~~P~y~~~~-~~~~~~G~------------~vv~v~~~~--~~~f-~ld-------- 734 (903)
.++.+++. +||.|++.+|+|..+. ..+...|. .+..++... ..+| .+|
T Consensus 125 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~ 204 (449)
T 3a8u_X 125 TAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIAL 204 (449)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHH
Confidence 99988765 6899999999998653 34444431 234444321 1111 146
Q ss_pred HHHHHHHhhcC--CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 735 EKTLVTILETV--KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 735 ~~~L~~~l~~~--~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
+++|++.+++. .+..+++++|++||||. +.+.+++++|.++|++||++||+||+|.++.+.+... .+...
T Consensus 205 ~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~-------~~~~~ 277 (449)
T 3a8u_X 205 ADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMF-------GADSF 277 (449)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-------HHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcch-------hhhhc
Confidence 89999988731 12367778887678996 6679999999999999999999999997665444321 12222
Q ss_pred ccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC----------C-CCCCCcHHHHHHHHHHHhccccc
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF----------P-GLSKPHSTVRYAIKKLLGLRERK 879 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~----------~-~~~~~s~~~Q~aa~~~L~~~~~~ 879 (903)
.-.+ .++ ||||.++ +| +|+||++++++ +++.+... . .+.+.+.++|.++.++|+.-..
T Consensus 278 ~~~~----di~---s~sK~l~-~G~~~~G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~- 347 (449)
T 3a8u_X 278 GVTP----DLM---CIAKQVT-NGAIPMGAVIASTE-IYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQK- 347 (449)
T ss_dssp TCCC----SEE---EECGGGG-TTSSCCEEEEEEHH-HHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred CCCC----CEE---EEccccc-CCCCceEEEEECHH-HHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHh-
Confidence 2222 222 9999998 57 99999999876 89988763 1 2566788889888888842111
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 043334 880 ARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+.+.+++.++++.++++.+
T Consensus 348 -~~~~~~~~~~~~~l~~~L~ 366 (449)
T 3a8u_X 348 -ENLVQSVAEVAPHFEKALH 366 (449)
T ss_dssp -TTHHHHHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHH
Confidence 2345556666666655543
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=198.65 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=144.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchH---HHHHHHHHHHhhcCCC--CCCCCcEEecCchHHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEID---VTPSIQQYIKSNFGFP--IDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~---lr~ala~~l~~~~G~~--~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
+.+.|.-| +.++++.+.+++.+.... .+.+. ....+++.+++.++.. .+++ +|++|+|+++++..++.
T Consensus 5 ~~~~~~p~--p~~~~~~v~~a~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~~g~t~al~~~~~ 77 (385)
T 2bkw_A 5 VDTLLIPG--PIILSGAVQKALDVPSLG----HTSPEFVSIFQRVLKNTRAVFKSAAASKSQ-PFVLAGSGTLGWDIFAS 77 (385)
T ss_dssp CCEECSSS--SCCCCHHHHHTTSCCCCC----TTSHHHHHHHHHHHHHHHHHTTCCGGGTCE-EEEEESCTTHHHHHHHH
T ss_pred cceeecCC--CcCchHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHhCCCCCCCCc-eEEEcCchHHHHHHHHH
Confidence 34555554 345667777776553322 12221 2333444444444432 2334 89999999999999999
Q ss_pred Hhc---cCCCeEEEc-CCCcHHHH-HHHHHcCCEEEEecC-CCCCCcccCHHHHHHHhhc-CCCcEEEEECCCCCCcccC
Q 043334 691 CCI---LEGGTLCFP-AGSNGNYV-SAARFLKANIVNIPT-ESEVGFKMTEKTLVTILET-VKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 691 ~l~---~pGD~Vlv~-~P~y~~~~-~~~~~~G~~vv~v~~-~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v 763 (903)
+++ ++||+|+++ .|+|..+. ..++..|++++.+++ + .++.+|+++|++++++ ++ ++|++++|+ ||||.+
T Consensus 78 ~~~~~~~~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~~d~~~l~~~l~~~~~-~~v~~~~~~-nptG~~ 153 (385)
T 2bkw_A 78 NFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLK--IGESVPLELITEKLSQNSY-GAVTVTHVD-TSTAVL 153 (385)
T ss_dssp HHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSS--TTSCCCHHHHHHHHHHSCC-SEEEEESEE-TTTTEE
T ss_pred HHhccCCCCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCC--CCCCCCHHHHHHHHhcCCC-CEEEEEccC-CCcCeE
Confidence 998 899999887 55666663 677889999999998 5 3567999999999987 55 599999998 999999
Q ss_pred CCHHHHHHHHHHHHhC--CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeE
Q 043334 764 YSNKEIENILTVCAKY--GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGF 840 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~--~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~ 840 (903)
++ +++|.++|+++ |++||+|++|+. ..... + +... +.++++.|+||.+ |.+|+ ||
T Consensus 154 ~~---l~~i~~~~~~~~~~~~li~D~a~~~---~~~~~---~-------~~~~----~~d~~~~s~~K~~~~~~G~--G~ 211 (385)
T 2bkw_A 154 SD---LKAISQAIKQTSPETFFVVDAVCSI---GCEEF---E-------FDEW----GVDFALTASQKAIGAPAGL--SI 211 (385)
T ss_dssp CC---HHHHHHHHHHHCTTSEEEEECTTTT---TTSCC---C-------TTTT----TCSEEEEESSSTTCCCSCE--EE
T ss_pred cC---HHHHHHHHHhhCCCCEEEEECcccc---CCccc---c-------cccc----CceEEEecCccccccCCcc--eE
Confidence 98 77999999999 999999999962 11111 1 1111 2578999999966 45775 99
Q ss_pred EEeCcHHHHH
Q 043334 841 LVLNHPQLVD 850 (903)
Q Consensus 841 lv~~~~~li~ 850 (903)
++++++ +++
T Consensus 212 ~~~~~~-~~~ 220 (385)
T 2bkw_A 212 SLCSSR-FMD 220 (385)
T ss_dssp EEECHH-HHH
T ss_pred EEEcHH-HHH
Confidence 999887 665
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=193.64 Aligned_cols=180 Identities=19% Similarity=0.257 Sum_probs=141.3
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.+.|++|+|+..+..+.+.+..... .++.+|||+|||+|.+++.+++..++.+|+|+|+|+.+++.|++|+..+++
T Consensus 83 ~~~~~~~ipr~~te~l~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-- 158 (276)
T 2b3t_A 83 FVSPATLIPRPDTECLVEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-- 158 (276)
T ss_dssp ECCTTSCCCCTTHHHHHHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC--
T ss_pred EeCCCCcccCchHHHHHHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--
Confidence 4689999999777666665443221 256799999999999999999988889999999999999999999988876
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
++++++++|+.+.... ++||+|++||||+.... ..+...+..+ .+..++.+
T Consensus 159 --------------~~v~~~~~d~~~~~~~--~~fD~Iv~npPy~~~~~-~~l~~~v~~~---------~p~~al~~--- 209 (276)
T 2b3t_A 159 --------------KNIHILQSDWFSALAG--QQFAMIVSNPPYIDEQD-PHLQQGDVRF---------EPLTALVA--- 209 (276)
T ss_dssp --------------CSEEEECCSTTGGGTT--CCEEEEEECCCCBCTTC-HHHHSSGGGS---------SCSTTTBC---
T ss_pred --------------CceEEEEcchhhhccc--CCccEEEECCCCCCccc-cccChhhhhc---------CcHHHHcC---
Confidence 4799999999886432 38999999999997655 3333333332 23334443
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
+.+|+..+..+++++.++|||||.+++.++..... .+.+++++.||..+....
T Consensus 210 ~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~l~~~Gf~~v~~~~ 262 (276)
T 2b3t_A 210 ADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGE-AVRQAFILAGYHDVETCR 262 (276)
T ss_dssp HHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHH-HHHHHHHHTTCTTCCEEE
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHH-HHHHHHHHCCCcEEEEEe
Confidence 67888899999999999999999999998776554 457889999998655543
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=201.83 Aligned_cols=257 Identities=13% Similarity=0.069 Sum_probs=173.8
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..+...||++.|.+ +++ .++.+.+++.+.+.......+..++++++++++++.++ .++ +|++++|+++++..+
T Consensus 54 ~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~---~~~-~v~~~~gg~eA~~~a 129 (453)
T 2cy8_A 54 VDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGVQYAASHPLEVRWAERIVAAFP---SIR-KLRFTGSGTETTLLA 129 (453)
T ss_dssp TTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTCSSCSSCHHHHHHHHHHHHHCT---TCS-EEEEESCHHHHHHHH
T ss_pred CCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhCC---CCC-EEEEeCCHHHHHHHH
Confidence 35667899988863 333 68899999999886532223467889999999999875 334 899999999999998
Q ss_pred HHH---hccCCCeEEEcCCCcHHHHHHHHH-----------cCC------EEEEecCCCCCCcccCHHHHHHHhhcC-CC
Q 043334 689 VLC---CILEGGTLCFPAGSNGNYVSAARF-----------LKA------NIVNIPTESEVGFKMTEKTLVTILETV-KK 747 (903)
Q Consensus 689 l~~---l~~pGD~Vlv~~P~y~~~~~~~~~-----------~G~------~vv~v~~~~~~~f~ld~~~L~~~l~~~-~~ 747 (903)
+.+ +.+ ++.|++.+|+|.++...+.. .|+ .++.++. .|++++++.+++. .+
T Consensus 130 l~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~ 201 (453)
T 2cy8_A 130 LRVARAFTG-RRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-------DDIEGMREVFANHGSD 201 (453)
T ss_dssp HHHHHHHHC-CCEEEEECC----------------------------CGGGEEEECT-------TCHHHHHHHHHHHGGG
T ss_pred HHHHHHhhC-CCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-------CCHHHHHHHHHhcCCC
Confidence 887 555 46888888999876543321 132 1333332 3789999988742 12
Q ss_pred cEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEcc
Q 043334 748 PWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGG 826 (903)
Q Consensus 748 ~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S 826 (903)
..+++++|++||||.++ +.+++++|.++|++||++||+||+|.++ +.+.. ......+-.+ . +.|
T Consensus 202 ~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-------~~~~~~~~~~----d---i~s 266 (453)
T 2cy8_A 202 IAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNH-------GMQALLDVQP----D---LTC 266 (453)
T ss_dssp EEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCTT-------HHHHHHTCCC----S---EEE
T ss_pred EEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCch-------hhhHHhCCCC----c---EEE
Confidence 35777888757899764 7999999999999999999999999876 44322 1122222222 1 339
Q ss_pred CchhcccccceeeEEEeCcHHHHHHHHhC------C-CCCCCcHHHHHHHHHHHhc-ccccchhHHHHHHHHHHHHHHHH
Q 043334 827 LSLKMLTGALKFGFLVLNHPQLVDAFSSF------P-GLSKPHSTVRYAIKKLLGL-RERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 827 ~SK~~g~~GlRiG~lv~~~~~li~~l~~~------~-~~~~~s~~~Q~aa~~~L~~-~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
|||.++ +|+|+||++++++ +++.+... . .+.+.+.+++.++.++|+. - .+.+.+++.++++.++++.
T Consensus 267 ~sK~l~-~G~~~G~v~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~---~~~~~~~~~~~~~~l~~~L 341 (453)
T 2cy8_A 267 LAKASA-GGLPGGILGGRED-VMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL---EDDVCAKINDLGQFAREAM 341 (453)
T ss_dssp EEGGGG-TTSSCEEEEECHH-HHTTSSSCC---------CCCCHHHHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHH
T ss_pred EChhhh-CCcceEEEechHH-HHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHH
Confidence 999998 5999999999986 88877651 1 2567788999999888852 1 1235566777777776665
Q ss_pred HH
Q 043334 899 KR 900 (903)
Q Consensus 899 ~~ 900 (903)
+.
T Consensus 342 ~~ 343 (453)
T 2cy8_A 342 NH 343 (453)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-18 Score=198.54 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=148.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH----cCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF----LKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~----~G~~vv 721 (903)
+..+..+.++++++.+++.+|.+ ++++++|+++++..++.+++++||.|++++|+|..+...++. .|++++
T Consensus 75 y~r~~~p~~~~l~~~la~~~g~~-----~~~~~~sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~ 149 (414)
T 3ndn_A 75 YSRYGNPTVSVFEERLRLIEGAP-----AAFATASGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGVQTV 149 (414)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred cCCCCChHHHHHHHHHHHHHCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCcEEE
Confidence 34444567889999999988852 577777779999999999999999999999999998877744 999999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
.++++ |++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|++||+||+|....+. .+
T Consensus 150 ~v~~~-------d~~~l~~ai~~~t-~~v~le~p~-NptG~~~~---l~~i~~la~~~g~~livDe~~~~~~~~-~~--- 213 (414)
T 3ndn_A 150 FVDGD-------DLSQWERALSVPT-QAVFFETPS-NPMQSLVD---IAAVTELAHAAGAKVVLDNVFATPLLQ-QG--- 213 (414)
T ss_dssp EECTT-------CHHHHHHHTSSCC-SEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHC-CC---
T ss_pred EeCCC-------CHHHHHHhcCCCC-eEEEEECCC-CCCCcccc---HHHHHHHHHHcCCEEEEECCCcccccC-Cc---
Confidence 99874 6899999998877 599999998 99999987 888999999999999999999621111 00
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHH-HHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVD-AFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~-~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. .. +..+++.|+||.++.+| +|+||++++++ .+. .+..... ....+....+++...+
T Consensus 214 ------~----~~----g~div~~S~sK~l~~~G~~~~G~vv~~~~-~~~~~l~~~~~~~g~~~~~~~a~~~~~~l 274 (414)
T 3ndn_A 214 ------F----PL----GVDVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQKLMRHTGPAMSAFNAWVLLKGL 274 (414)
T ss_dssp ------G----GG----TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHTTHHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred ------h----hc----CCCeEeccCCccccCCCCceEEEEEECHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 1 11 35789999999999888 89999999887 554 5553322 2334444444444444
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=200.69 Aligned_cols=263 Identities=9% Similarity=0.050 Sum_probs=183.5
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|++.| .+.++ .++.+.+++.+.+.+.. ...+..+.+.++++++++.++... +|++|+|+++++.
T Consensus 46 ~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~----~v~~~~ggseA~~ 121 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEY----VIFFSNSGSEANE 121 (452)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCE----EEEEESSHHHHHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCc----eEEEeCchHHHHH
Confidence 467789999877 34444 57899999999887642 234667889999999999887543 2999999999999
Q ss_pred HHHHHhc-----c---CCCeEEEcCCCcHHHHHHHHHcCCE-------------EEEecCCCC--CCcc--------cCH
Q 043334 687 KLVLCCI-----L---EGGTLCFPAGSNGNYVSAARFLKAN-------------IVNIPTESE--VGFK--------MTE 735 (903)
Q Consensus 687 ~ll~~l~-----~---pGD~Vlv~~P~y~~~~~~~~~~G~~-------------vv~v~~~~~--~~f~--------ld~ 735 (903)
.++..++ . ++|.|++.+|+|..+...+...+.. ...++.... ..++ .++
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9998887 5 7899999999998876655554432 333332110 0011 018
Q ss_pred HHHHHHhh---cCCCcEEEEECCC-CCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 736 KTLVTILE---TVKKPWVYISGPT-INPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 736 ~~L~~~l~---~~~~~~vil~~P~-~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
++|++.++ +.+ ..+++++|. || ||.++ +.+++++|.++|++||+++|+||+|.++.+.+... . ...
T Consensus 202 ~~le~~l~~~~~~~-~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~---~----~~~ 272 (452)
T 3n5m_A 202 KEVDRVMTWELSET-IAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAF---G----FMN 272 (452)
T ss_dssp HHHHHHHHHHCGGG-EEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---G----GGG
T ss_pred HHHHHHHHhcCCCC-EEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccc---h----hhh
Confidence 99999887 223 356666676 69 99766 88889999999999999999999998776555431 1 111
Q ss_pred hccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh--------CCCCCCCcHHHHHHHHHHHhcccccch
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS--------FPGLSKPHSTVRYAIKKLLGLRERKAR 881 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~--------~~~~~~~s~~~Q~aa~~~L~~~~~~~~ 881 (903)
..-. .-+.+|||++++ | +|+||++++++ +++.+.. ...+++.++++|.++.++|+.-.. +
T Consensus 273 ~~~~-------~di~t~sK~l~~-G~~~ig~~~~~~~-i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~ 341 (452)
T 3n5m_A 273 YDVK-------PDIITMAKGITS-AYLPLSATAVKRE-IYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIEN--E 341 (452)
T ss_dssp TTCC-------CSEEEECGGGGT-TSSCCEEEEEEHH-HHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHH--T
T ss_pred cCCC-------CCEEeecccccC-CCcceEEEEECHH-HHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHh--c
Confidence 1111 123479999986 9 99999999887 9888853 113677889999999999852111 2
Q ss_pred hHHHHHHHHHHHHHHHH
Q 043334 882 DLMNAVAEHIRNLESRS 898 (903)
Q Consensus 882 ~~~~~l~~~r~~y~~Rr 898 (903)
.+.+.+.+..+.++++.
T Consensus 342 ~~~~~~~~~~~~l~~~L 358 (452)
T 3n5m_A 342 NLIERSAQMGSLLLEQL 358 (452)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33344444444444443
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=203.26 Aligned_cols=226 Identities=11% Similarity=0.017 Sum_probs=156.0
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHH-ccCCC-------CC---chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFA-RQNMS-------ES---EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~~-------~G---~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.|+|..+++.. ++.+.+++.+.+. .|... .| ..++.+.+++.+++.+|.+.+ +|++++| +++
T Consensus 26 ~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---~i~~~sG-t~a 99 (417)
T 3n0l_A 26 EGLEMIASENFT--LPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA---NVQPNSG-SQA 99 (417)
T ss_dssp HSEECCTTCCCC--CHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSH-HHH
T ss_pred cCeeeecccCCC--CHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc---ceEeccH-HHH
Confidence 468887776654 7889998887763 22110 11 235556677788888888544 7999999 699
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHH---HHHH--cCCEEEEecCCCCCCcccCHHHHHHHhh-cCCCcEEEEECCCCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVS---AARF--LKANIVNIPTESEVGFKMTEKTLVTILE-TVKKPWVYISGPTIN 758 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~---~~~~--~G~~vv~v~~~~~~~f~ld~~~L~~~l~-~~~~~~vil~~P~~N 758 (903)
+..++.++++|||+|+++.|+|..+.. .... .+..+++++.+ +++.+|+++|++.++ .++ ++|++++|+ |
T Consensus 100 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~-~~v~~~~~~-~ 175 (417)
T 3n0l_A 100 NQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVE--LDGRIDYEKVREIAKKEKP-KLIVCGASA-Y 175 (417)
T ss_dssp HHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCC--TTSSCCHHHHHHHHHHHCC-SEEEECCSS-C
T ss_pred HHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCC--CCCCcCHHHHHHHHHhcCC-eEEEECCcc-c
Confidence 999999999999999999999987654 3333 34556777765 467799999999998 455 588888776 6
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
|.+++ +++|.++|+++|++||+||+|. ++.|.+... ..+ . ...+++.|+||++ +|+|
T Consensus 176 --G~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~------~~~---~------~~di~~~s~sK~l--~g~~ 233 (417)
T 3n0l_A 176 --ARVID---FAKFREIADEIGAYLFADIAHIAGLVVAGEHP------SPF---P------YAHVVSSTTHKTL--RGPR 233 (417)
T ss_dssp --CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC------CCT---T------TCSEEEEESSTTT--CSCS
T ss_pred --CccCC---HHHHHHHHHHcCCEEEEECccchhhhhcccCC------Ccc---c------cceEEEeeCcccc--CCCC
Confidence 77888 8899999999999999999963 344444321 001 1 2468999999987 6899
Q ss_pred eeEEEeCcHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAFSSFPG---LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~~~---~~~~s~~~Q~aa~~~L 873 (903)
.||++++++++++.+..... ..+++...+.++..++
T Consensus 234 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~ 272 (417)
T 3n0l_A 234 GGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGF 272 (417)
T ss_dssp CEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHH
T ss_pred eeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHH
Confidence 99999995448888876533 2344455555555455
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-19 Score=197.75 Aligned_cols=222 Identities=13% Similarity=0.173 Sum_probs=163.5
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccC--CC---CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQN--MS---ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~---~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
.+.+.-| +.++|+.+++++.+++.+.. .. .+..++.+.+++++++.+|.+ +++ +|++|+|+++++..++.+
T Consensus 5 ~~~~~p~--p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-~v~~~~g~t~al~~~~~~ 80 (362)
T 3ffr_A 5 KIYFTPG--PSELYPTVRQHMITALDEKIGVISHRSKKFEEVYKTASDNLKTLLELP-SNY-EVLFLASATEIWERIIQN 80 (362)
T ss_dssp CEEECSS--SCCCCTTHHHHHHHHHHTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTE-EEEEESCHHHHHHHHHHH
T ss_pred ceeccCC--CcCCCHHHHHHHHHHhcCCccCcCCCCHHHHHHHHHHHHHHHHHhCCC-CCc-EEEEeCCchHHHHHHHHh
Confidence 4555544 34567778888877766532 11 123356788899999999885 334 899999999999999999
Q ss_pred hccCCCeEEEcCCCcHH-HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 692 CILEGGTLCFPAGSNGN-YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 692 l~~pGD~Vlv~~P~y~~-~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
++++ +.+++..|.|.. +...++..|++++.++.+. ++.+|+++++ +++++ ++|++++|+ ||||.+++ ++
T Consensus 81 l~~~-~~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~--~~~~d~~~l~--~~~~~-~~v~~~~~~-nptG~~~~---l~ 150 (362)
T 3ffr_A 81 CVEK-KSFHCVNGSFSKRFYEFAGELGREAYKEEAAF--GKGFYPADIT--VPADA-EIICLTHNE-TSSGVSMP---VE 150 (362)
T ss_dssp HCSS-EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT--TCCCCGGGCC--CCTTC-CEEEEESEE-TTTTEECC---HH
T ss_pred ccCC-cEEEEcCcHHHHHHHHHHHHhCCCeEEEecCC--CCCCCHHHHh--ccCCc-cEEEEEcCC-CCcceeCC---HH
Confidence 9988 666666667763 3456788899999999853 5678999998 55556 599999998 99999999 77
Q ss_pred HHHHHHHhC-CcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHH
Q 043334 771 NILTVCAKY-GARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQL 848 (903)
Q Consensus 771 eI~~ia~k~-~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~l 848 (903)
+|.++|+++ |++||+|++|+.... .. . +. ...+++.|+||.++ ++| +|+++++++ +
T Consensus 151 ~i~~la~~~p~~~li~D~a~~~~~~---~~---~-------~~------~~d~~~~s~~K~~~~~~G--~g~~~~~~~-~ 208 (362)
T 3ffr_A 151 DINTFRDKNKDALIFVDAVSSLPYP---KF---D-------WT------KIDSVFFSVQKCFGLPAG--LGVWILNDR-V 208 (362)
T ss_dssp HHTTSGGGSTTSEEEEECTTTTTSS---CC---C-------TT------SCSEEEEETTSTTCCCSC--CEEEEEEHH-H
T ss_pred HHHHHHHhCCCCEEEEecccccCCc---cc---C-------hh------HCcEEEEecccccCCCCc--eEEEEECHH-H
Confidence 788899999 999999999863221 10 0 00 14588999999998 788 577888876 7
Q ss_pred HHHHHhCCC-----------------------CCCCcHHHHHHHHHHHh
Q 043334 849 VDAFSSFPG-----------------------LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 849 i~~l~~~~~-----------------------~~~~s~~~Q~aa~~~L~ 874 (903)
++.+..... ...++...+.++..++.
T Consensus 209 ~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~ 257 (362)
T 3ffr_A 209 IEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTG 257 (362)
T ss_dssp HHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred HHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Confidence 777665321 45566777777777773
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=202.17 Aligned_cols=265 Identities=11% Similarity=0.038 Sum_probs=183.5
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc---CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ---NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y---~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...+|+..| .+.++ .++.+.+++.+.+.+. ....+..+.+.++++++++.++... ++ +|++|+|+++++
T Consensus 61 ~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~-~v~~~~sGseA~ 138 (453)
T 4ffc_A 61 ADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDH-DK-RTALFNSGAEAV 138 (453)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSS-CE-EEEEESSHHHHH
T ss_pred CCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCC-Cc-EEEEeCcHHHHH
Confidence 456779999876 45555 4889999998887653 2345677889999999999876432 23 899999999999
Q ss_pred HHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCC--------------EEEEecCC--CCCCcccC--------HHHHH
Q 043334 686 NKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKA--------------NIVNIPTE--SEVGFKMT--------EKTLV 739 (903)
Q Consensus 686 ~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~--------------~vv~v~~~--~~~~f~ld--------~~~L~ 739 (903)
..++..... .++.|++.+|+|..+...+...+. .+..+|.. ..+.+..+ .+.++
T Consensus 139 ~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~ 218 (453)
T 4ffc_A 139 ENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIE 218 (453)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHH
Confidence 998876653 458999999999876655544322 34445443 11112233 45666
Q ss_pred HHhhcCCCcEEEEECCCCCCcc--cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCC
Q 043334 740 TILETVKKPWVYISGPTINPTG--LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNS 817 (903)
Q Consensus 740 ~~l~~~~~~~vil~~P~~NPTG--~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~ 817 (903)
+.+.+.+ .+++++.|+ ||+| .+.+.+.+++|.++|++||++||+||+|.++.+.+... . ......
T Consensus 219 ~~i~~~~-~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~---a----~~~~~~---- 285 (453)
T 4ffc_A 219 TQIGAQS-LAAIIIEPI-QGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWF---A----SEHEGI---- 285 (453)
T ss_dssp HHTCGGG-EEEEEECSS-BTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---T----HHHHTC----
T ss_pred HhcCCCC-EEEEEEcCC-CCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccc---h----hhhcCC----
Confidence 6665444 478889998 8877 45588889999999999999999999998775555421 1 122221
Q ss_pred CCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Q 043334 818 SFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLE 895 (903)
Q Consensus 818 ~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~ 895 (903)
..-+.||||.+++ |||+||++++++ +++.+.... .+++.++++|.++.++|+.-.. +.+.+++.+..+.++
T Consensus 286 ---~pdi~t~sK~~~~-G~~~G~~~~~~~-i~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~ 358 (453)
T 4ffc_A 286 ---VPDIVTMAKGIAG-GMPLSAVTGRAE-LMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRE--LDLPARARAIEASVT 358 (453)
T ss_dssp ---CCSEEEECGGGGT-TSSCEEEEEEHH-HHTTSCTTSSCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHH
T ss_pred ---CcchHhhhhhhcC-CcCeEEEEECHH-HHhhhcccCcCCCCCcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHH
Confidence 2224579999986 999999999877 888877543 3778899999999999952111 233444444444444
Q ss_pred HHH
Q 043334 896 SRS 898 (903)
Q Consensus 896 ~Rr 898 (903)
++.
T Consensus 359 ~~l 361 (453)
T 4ffc_A 359 SRL 361 (453)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8e-19 Score=203.28 Aligned_cols=244 Identities=12% Similarity=0.082 Sum_probs=176.5
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC----CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN----MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~----~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
..|...+|++.| .+.++ .++.+.+++.+.+.+.. ...+..+.+.++++++++.++...+ +|++|+|++++
T Consensus 47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~ggseA 123 (459)
T 4a6r_A 47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFD---RVFYTNSGSES 123 (459)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCC---EEEEESSHHHH
T ss_pred CCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCchHHH
Confidence 456778999876 45555 47889999999887632 2345678899999999998776544 89999999999
Q ss_pred HHHHHHHhcc--------CCCeEEEcCCCcHHHHHHHHHcCC-------------EEEEecCCC--C-CCcccC------
Q 043334 685 FNKLVLCCIL--------EGGTLCFPAGSNGNYVSAARFLKA-------------NIVNIPTES--E-VGFKMT------ 734 (903)
Q Consensus 685 l~~ll~~l~~--------pGD~Vlv~~P~y~~~~~~~~~~G~-------------~vv~v~~~~--~-~~f~ld------ 734 (903)
+..++..+++ +++.|++.+|+|.++...+...+. .+..++... . +.+ +|
T Consensus 124 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~ 202 (459)
T 4a6r_A 124 VDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGV 202 (459)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHH
Confidence 9999998876 578999999999887666554432 233333211 0 112 34
Q ss_pred --HHHHHHHhhcC--CCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 735 --EKTLVTILETV--KKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 735 --~~~L~~~l~~~--~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
+++|++.+... ...++++++|++|++|. +++.+++++|.++|++||+++|+||+|.++...+... ...
T Consensus 203 ~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~-------~~~ 275 (459)
T 4a6r_A 203 VAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWF-------GHQ 275 (459)
T ss_dssp HHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS-------HHH
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-------hHh
Confidence 78888888631 12367788887455555 5599999999999999999999999998776555431 122
Q ss_pred hhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh---CC--CCCCCcHHHHHHHHHHHh
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS---FP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~---~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
.....+ . +.+|||+++..|+|+||++++++ +++.+.. .. .+++.++++|.++.++|+
T Consensus 276 ~~~~~p----d---i~t~sK~l~gg~~~lg~v~~~~~-i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 337 (459)
T 4a6r_A 276 HFGFQP----D---LFTAAKGLSSGYLPIGAVFVGKR-VAEGLIAGGDFNHGFTYSGHPVCAAVAHANVA 337 (459)
T ss_dssp HHTCCC----S---EEEECGGGGTTSSCCEEEEECHH-HHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHH
T ss_pred hcCCCC----C---eeehhhhhcCCCCCccceeeCHH-HHHHhhcCCCcccCCCCCCCHHHHHHHHHHHH
Confidence 222222 2 33689999755599999999887 9998872 22 266788999999999995
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-18 Score=196.16 Aligned_cols=259 Identities=11% Similarity=0.079 Sum_probs=177.0
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCC-C-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNM-S-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~-~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|. ++++ .++.+.+++.+.+.++.. + ....+.+..+++.+++.+|. + +|++++|+++++.
T Consensus 62 ~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~-~v~~~~sGseA~~ 136 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGY----D-KVLMMNTGAEANE 136 (433)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTC----S-EEEEESSHHHHHH
T ss_pred CCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCC----C-eEEEeCCHHHHHH
Confidence 4567789998764 4666 789999999998866422 1 23456778888888888762 3 8999999999999
Q ss_pred HHHHHhc---------cCC-CeEEEcCCCcHHHHH-HHHHcC------------CEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 687 KLVLCCI---------LEG-GTLCFPAGSNGNYVS-AARFLK------------ANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 687 ~ll~~l~---------~pG-D~Vlv~~P~y~~~~~-~~~~~G------------~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.++..+. .+| |.|++.+|+|..+.. .+...| .+++.+|. .|+++++++++
T Consensus 137 ~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 209 (433)
T 1z7d_A 137 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------DDLEALEEELK 209 (433)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------TCHHHHHHHHT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9888753 478 999999999987643 333333 24444543 37999999984
Q ss_pred cCCCcEEEEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 744 TVKKPWVYISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
... ..+++++|.+|+||.+ ++.+.+++|.++|+++|+++|+||+|.++.+.+... . .....-.+ .+
T Consensus 210 ~~~-~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~---~----~~~~~~~~----di- 276 (433)
T 1z7d_A 210 DPN-VCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL---C----VHHYNVKP----DV- 276 (433)
T ss_dssp STT-EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---G----GGGGTCCC----SE-
T ss_pred CCC-EEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcch---h----hHhcCCCC----CE-
Confidence 222 3567777876789975 788999999999999999999999998755444321 1 11111111 22
Q ss_pred EEccCchhccccc-ceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 823 ~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.||||.++ +| +|+||++++++ +++.+.... .+.+.+.+++.++.++|+.-.. +.+.+.+.++++.++++.+
T Consensus 277 --~t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 350 (433)
T 1z7d_A 277 --ILLGKALS-GGHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLK 350 (433)
T ss_dssp --EEECGGGG-TTSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred --EEECcccc-CCCCCeEEEEECHH-HHhhhccccccccCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHH
Confidence 28999998 89 99999999987 887776532 3667788899888888842111 2345666667777766655
Q ss_pred HH
Q 043334 900 RL 901 (903)
Q Consensus 900 ~l 901 (903)
.+
T Consensus 351 ~l 352 (433)
T 1z7d_A 351 RE 352 (433)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=194.11 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=146.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCC
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESE 728 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~ 728 (903)
....+++.+++++|.+ + .|++++| ++++..++.+++++||.|+++.|+|...... ++..|++++.++.+
T Consensus 53 ~~~~l~~~la~~~~~~-~---~i~~~sG-t~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 125 (386)
T 1cs1_A 53 TRDVVQRALAELEGGA-G---AVLTNTG-MSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQG-- 125 (386)
T ss_dssp HHHHHHHHHHHHHTCS-E---EEEESSH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECTT--
T ss_pred cHHHHHHHHHHHhCCC-c---EEEeCCH-HHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCCEEEEeCCC--
Confidence 3445555555666654 2 7888888 8999999999999999999999999974443 46679999999863
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++.+++.+++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+||+|..+.+. . + .
T Consensus 126 -----d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~li~De~~~~~~~~--~-------~-~ 185 (386)
T 1cs1_A 126 -----DEQALRAALAEKP-KLVLVESPS-NPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQ--N-------P-L 185 (386)
T ss_dssp -----CHHHHHHHHHTCC-SEEEEECSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC--C-------G-G
T ss_pred -----CHHHHHHhhccCC-cEEEEeCCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC--C-------c-c
Confidence 7899999998766 599999998 99999997 889999999999999999999765432 1 1 1
Q ss_pred hhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. . +.++++.|+||.++.+|.|+ ||++++++++++.+..... ....+...++++...+
T Consensus 186 ~----~----~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l 245 (386)
T 1cs1_A 186 A----L----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 245 (386)
T ss_dssp G----G----TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred c----c----CceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 1 1 36799999999999999997 9999987448888876543 3446777787776666
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-20 Score=203.47 Aligned_cols=241 Identities=11% Similarity=0.157 Sum_probs=170.8
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHcc--------CC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch-HH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQ--------NM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS-QS 683 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y--------~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs-~~ 683 (903)
.+++++.|.+ ++|+.+++++.+.+..+ .. ..+..++.+++++++++++|.+ +++ +|++|+|+ ++
T Consensus 3 ~~~~~~~g~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~-~~~-~v~~~~g~gt~ 78 (360)
T 1w23_A 3 QVFNFNAGPS--ALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIP-NDY-QILFLQGGASL 78 (360)
T ss_dssp CCEECCSSSC--CCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCC-TTE-EEEEESSHHHH
T ss_pred ceEeecCCCc--CCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHhCCC-CCc-eEEEECCcchH
Confidence 3677777754 67889999998877542 01 2234456788999999999986 344 89999999 99
Q ss_pred HHHHHHHHhccC---CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHH-HhhcCCCcEEEEECCCCCC
Q 043334 684 LFNKLVLCCILE---GGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVT-ILETVKKPWVYISGPTINP 759 (903)
Q Consensus 684 al~~ll~~l~~p---GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~-~l~~~~~~~vil~~P~~NP 759 (903)
++..++.+++.+ ||.|+++.++|..+ ..++..| +++.+++++++++ +|++++++ ++++++ ++|++++|+ ||
T Consensus 79 al~~~~~~l~~~~~~g~~vi~~~~~~~~~-~~~~~~g-~~~~v~~~~~~~~-~d~~~l~~~~i~~~~-k~v~~~~~~-np 153 (360)
T 1w23_A 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKAL-KEAKLLG-ETHIAASTKANSY-QSIPDFSEFQLNEND-AYLHITSNN-TI 153 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHH-HHHHTTS-EEEEEEECGGGTS-CSCCCGGGCCCCTTE-EEEEEESEE-TT
T ss_pred HHHHHHHHhcCCCCcccEEEecchhHHHH-HHHHHhC-CeEEeecccccCc-CCccchHhhccCCCC-CEEEEeCCC-CC
Confidence 999999888865 56777777776653 3467789 9999999753444 78888988 776665 589999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ ++ ++++|++||+|++|+.... + .+ +.. ..++++|+||.+|++| +|
T Consensus 154 tG~~~~--~i------~~~~~~~li~D~a~~~~~~---~---~~-------~~~------~di~~~s~sK~~~~~G--~G 204 (360)
T 1w23_A 154 YGTQYQ--NF------PEINHAPLIADMSSDILSR---P---LK-------VNQ------FGMIYAGAQKNLGPSG--VT 204 (360)
T ss_dssp TTEECS--SC------CCCCSSCEEEECTTTTTSS---C---CC-------GGG------CSEEEEETTTTTSCTT--CE
T ss_pred cceecc--cc------cccCCceEEEechhhcCCC---C---cC-------ccc------CCEEEEEcccccCCCC--cE
Confidence 999988 22 2389999999999964321 1 01 111 1478999999999777 89
Q ss_pred EEEeCcHHHHHHHHhCC-------------C-CCCCcHHHHHHHHHHHhcccccchhHHH--HHHHHHHHHHHHHHHHh
Q 043334 840 FLVLNHPQLVDAFSSFP-------------G-LSKPHSTVRYAIKKLLGLRERKARDLMN--AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 840 ~lv~~~~~li~~l~~~~-------------~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~--~l~~~r~~y~~Rr~~l~ 902 (903)
|++++++ +++.+.... . ...++...+.++..+++. +.+ +++++++.++++++.+.
T Consensus 205 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-------~~~~~~~~~~~~~~~~~~~~l~ 275 (360)
T 1w23_A 205 VVIVKKD-LLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDW-------IKDLGGAEAIAKQNEEKAKIIY 275 (360)
T ss_dssp EEEEEHH-HHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH-------HHHTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEcHH-HHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHHHHH
Confidence 9999887 766554432 1 234566667777776731 111 45566666666666553
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.79 E-value=3.1e-18 Score=195.27 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=146.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEV 729 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~ 729 (903)
...+++.+++++|.+ + .|++++|+ +++..++. ++++||+|++++|+|+..... ++..|++++.++++
T Consensus 69 ~~~l~~~la~~~g~~-~---~i~~~sG~-~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~--- 139 (403)
T 3cog_A 69 RNCLEKAVAALDGAK-Y---CLAFASGL-AATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS--- 139 (403)
T ss_dssp HHHHHHHHHHHHTCS-E---EEEESCHH-HHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT---
T ss_pred HHHHHHHHHHHhCCC-c---EEEECCHH-HHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC---
Confidence 445555556666664 2 79999886 89999888 899999999999999975443 35689999999874
Q ss_pred CcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC-cEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 730 GFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG-ARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 730 ~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~-i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
|++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++| +++|+|++|....+. .+ +
T Consensus 140 ----d~~~l~~~i~~~t-~~v~~~~p~-nptG~~~~---l~~i~~la~~~g~~~livD~~~~~~~~~-~~---------~ 200 (403)
T 3cog_A 140 ----KIKLLEAAITPET-KLVWIETPT-NPTQKVID---IEGCAHIVHKHGDIILVVDNTFMSPYFQ-RP---------L 200 (403)
T ss_dssp ----SHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHTSSSCCEEEEECTTTCTTTC-CT---------T
T ss_pred ----CHHHHHHhcCcCC-eEEEEECCC-CCCCeeeC---HHHHHHHHHHcCCCEEEEECCCcccccC-Cc---------c
Confidence 6899999998766 599999998 99999998 889999999999 999999999765442 11 1
Q ss_pred hhhccCCCCCCceEEEccCchhcccccc-eeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGAL-KFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~Gl-RiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
. . +.+++++|+||.++.+|. |+||++++++++++.+..... ....+.+.|+++...|.
T Consensus 201 ~----~----~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 261 (403)
T 3cog_A 201 A----L----GADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLK 261 (403)
T ss_dssp T----T----TCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred c----c----CCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 1 368999999999998775 799999975548888876543 44567788888887773
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-19 Score=200.65 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=170.7
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccC---------CCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQN---------MSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~---------~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.++.+..|. .++|+.+++++.+.+..+. ..+ +..++++++++.+++.+|.+.+.+ .+++|+|++++
T Consensus 4 ~~~l~~~~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~-~i~~t~g~t~a 80 (362)
T 2c0r_A 4 RAYNFNAGP--AALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYK-VLFIQGGASTQ 80 (362)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEE-EEEESSHHHHH
T ss_pred ceeeccCCC--CCCCHHHHHHHHHHHhhhhhcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcE-EEEECCCchHH
Confidence 356666663 5788999999988775431 111 134568899999999999853211 35788999999
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHH--HHHHHHcCCEEEEecCCCC--CCcccCHHHHHHHhhcCCCcEEEEECCCCCCc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNY--VSAARFLKANIVNIPTESE--VGFKMTEKTLVTILETVKKPWVYISGPTINPT 760 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~--~~~~~~~G~~vv~v~~~~~--~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT 760 (903)
+..++.++++|||+|+++++.+... ...++..| +++.++++.+ .++.+|.++++ +++++ ++|++++|+ |||
T Consensus 81 ~~~~~~~l~~~gd~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t-~~v~~~~~~-n~t 155 (362)
T 2c0r_A 81 FAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNA-AYLHLTSNE-TIE 155 (362)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTE-EEEEEESEE-TTT
T ss_pred HHHHHHhcCCCCCeEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCc-CEEEEeCCc-Ccc
Confidence 9999999999999999887764442 46677889 9999998632 23335665553 55555 589999998 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+++ ++++| +|+++|+|++|+... .+. + +.. ..+++.|+||.+|++| +||
T Consensus 156 G~~~~--~l~~i------~~~~vivD~a~~~~~---~~~---~-------~~~------~d~~~~s~~K~~g~~G--~G~ 206 (362)
T 2c0r_A 156 GAQFK--AFPDT------GSVPLIGDMSSDILS---RPF---D-------LNQ------FGLVYAGAQKNLGPSG--VTV 206 (362)
T ss_dssp TEECS--SCCCC------TTSCEEEECTTTTTS---SCC---C-------GGG------CSEEEEETTTTTCCSS--CEE
T ss_pred ceecc--ccccc------CCCEEEEEChhhccC---Ccc---c-------hhH------CcEEEEeccccccCcC--cEE
Confidence 99765 35554 899999999996431 111 1 111 2478889999999889 999
Q ss_pred EEeCcHHHHHHHHhC--------------CCCCCCcHHHHHHHHHHHhcccccchhHHH--HHHHHHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSF--------------PGLSKPHSTVRYAIKKLLGLRERKARDLMN--AVAEHIRNLESRSKRLK 902 (903)
Q Consensus 841 lv~~~~~li~~l~~~--------------~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~--~l~~~r~~y~~Rr~~l~ 902 (903)
++++++ +++.+... ....+++.+.|.++..+|+. +.+ .++++++.++++++++.
T Consensus 207 l~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~-------~~~~~~~~~~~~~~~~~~~~l~ 276 (362)
T 2c0r_A 207 VIVRED-LVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW-------IEERGGLEGVQQANRKKASLIY 276 (362)
T ss_dssp EEEEGG-GSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH-------HHHTTHHHHHHHHHHHHHHHHH
T ss_pred EEEcHH-HHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHHHH
Confidence 999887 66555431 12356778889999988841 112 46667777777777654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=190.48 Aligned_cols=182 Identities=14% Similarity=0.022 Sum_probs=144.5
Q ss_pred HHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCCCcc
Q 043334 657 IQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEVGFK 732 (903)
Q Consensus 657 la~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~~f~ 732 (903)
+++.+++.+|.+ + .|++++| ++++..++.+++++||+|+++.|+|+.+...+ +..|++++.++.
T Consensus 3 l~~~la~~~g~~-~---~i~~~sG-~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------- 70 (331)
T 1pff_A 3 LEGKIAKLEHAE-A---CAATASG-MGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM------- 70 (331)
T ss_dssp HHHHHHHHHTCS-E---EEEESSH-HHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-------
T ss_pred HHHHHHHHhCCC-e---EEEeCCh-HHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-------
Confidence 344444555664 2 6888888 79999999989999999999999999987765 458999999986
Q ss_pred cCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh-CCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 733 MTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK-YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 733 ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k-~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
.|++.+++.+++++ ++|++++|+ ||||.+++ +++|.++|++ +|+++|+|++|....+. . + .
T Consensus 71 ~d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~---~~~i~~~~~~~~~~~li~D~a~~~~~~~--~-------~-~--- 132 (331)
T 1pff_A 71 AVPGNIEKHLKPNT-RIVYFETPA-NPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILT--N-------P-L--- 132 (331)
T ss_dssp TSTTHHHHTCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHC--C-------G-G---
T ss_pred CCHHHHHHhhcCCC-eEEEEECCC-CCcCcccC---HHHHHHHHhhhcCCEEEEECCCcccccC--C-------h-h---
Confidence 36788999888665 589999998 99999997 8899999999 99999999999643321 0 1 1
Q ss_pred ccCCCCCCceEEEccCchhcccccce-eeEEEeCcHHHHHHHHhCCCC---CCCcHHHHHHHHHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALK-FGFLVLNHPQLVDAFSSFPGL---SKPHSTVRYAIKKLL 873 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlR-iG~lv~~~~~li~~l~~~~~~---~~~s~~~Q~aa~~~L 873 (903)
.. ++++++.|+||.+++||.| +||++++++++++.+...... .+.+...|+++...+
T Consensus 133 -~~----~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 193 (331)
T 1pff_A 133 -DL----GVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGT 193 (331)
T ss_dssp -GG----TCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred -hc----CCcEEEEECccccCCCCCceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCc
Confidence 11 3689999999999999999 799999983399998876543 356777787766666
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-18 Score=194.81 Aligned_cols=201 Identities=13% Similarity=0.062 Sum_probs=157.2
Q ss_pred cCCCCCCCC-cHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-c
Q 043334 621 DVDQSFLPI-PSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-I 693 (903)
Q Consensus 621 s~g~p~~~~-p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~ 693 (903)
+.|.|++++ ++.+.+++.+.+.. |....|.+++++++++.+++.+|.+ . .|++++| ++++..++.++ +
T Consensus 5 ~~g~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~-~---~i~~~~g-t~al~~~~~~~~~ 79 (418)
T 2c81_A 5 FDHWPEWPQHSDRTRRKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVP-Y---CVPTTSG-STALMLALEALGI 79 (418)
T ss_dssp ---CCCSSCCCHHHHHHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCS-E---EEEESCH-HHHHHHHHHHTTC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCC-c---EEEeCCH-HHHHHHHHHHcCC
Confidence 446666664 78899999888865 3334577778899999999988876 2 4665555 69999999999 8
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
++||+|+++.|+|..+...++..|++++.+++++ ++|.+|++++++.+++++ ++|+ ++ ||||...+ +++|.
T Consensus 80 ~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~i~~~~-~~v~---~~-~~~G~~~~---~~~i~ 150 (418)
T 2c81_A 80 GEGDEVIVPSLTWIATATAVLNVNALPVFVDVEA-DTYCIDPQLIKSAITDKT-KAII---PV-HLFGSMAN---MDEIN 150 (418)
T ss_dssp CTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHGGGCCTTE-EEEC---CB-CCTTCCCC---HHHHH
T ss_pred CCcCEEEECCCccHhHHHHHHHcCCEEEEEecCC-CCCCcCHHHHHHhhCCCC-eEEE---Ee-CCcCCccc---HHHHH
Confidence 9999999999999999999999999999999975 468899999999987655 3555 45 79998865 88999
Q ss_pred HHHHhCCcEEEEecCCCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
++|+++|++||+|++|+.+. |++... ... ..+.+.|| ||.++. | |+||++++++++++
T Consensus 151 ~~~~~~~~~li~D~a~~~~~~~~~~~~------------~~~-----~~~~~~s~s~~K~~~~-g-~~g~~~~~~~~l~~ 211 (418)
T 2c81_A 151 EIAQEHNLFVIEDCAQSHGSVWNNQRA------------GTI-----GDIGAFSCQQGKVLTA-G-EGGIIVTKNPRLFE 211 (418)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET------------TSS-----SSEEEEECCTTSSSCS-S-SCEEEEESCHHHHH
T ss_pred HHHHHCCCEEEEECcccccCccCCEec------------ccc-----cceEEEeccCCcccCC-C-CeEEEEECCHHHHH
Confidence 99999999999999998765 544221 111 13677788 999986 8 99999997554877
Q ss_pred HHHh
Q 043334 851 AFSS 854 (903)
Q Consensus 851 ~l~~ 854 (903)
.+..
T Consensus 212 ~~~~ 215 (418)
T 2c81_A 212 LIQQ 215 (418)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-18 Score=192.82 Aligned_cols=188 Identities=17% Similarity=0.141 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++.+|.+ + .+++++| ++++..++.+++++||+|+++.|+|+.+... ++..|++++.++.
T Consensus 58 ~~~~~~l~~~la~~~g~~-~---~i~~~sG-~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~- 131 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA-G---SAAFGSG-MGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLIDT- 131 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS-E---EEEESSH-HHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTCEEEEECT-
T ss_pred ChHHHHHHHHHHHHhCCC-e---EEEeCCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECC-
Confidence 345667777788777765 2 4666555 5999999999999999999999999986665 5779999999986
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++++++.+++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|....+. .+
T Consensus 132 ------~d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~---l~~i~~~~~~~~~~livD~~~~~~~~~-~~-------- 191 (389)
T 3acz_A 132 ------SDVEKVKAAWKPNT-KMVYLESPA-NPTCKVSD---IKGIAVVCHERGARLVVDATFTSPCFL-KP-------- 191 (389)
T ss_dssp ------TCHHHHHHTCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTTC-CG--------
T ss_pred ------CCHHHHHHhcCCCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccc-Cc--------
Confidence 37899999998766 599999998 99999998 889999999999999999999754331 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCc-HHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNH-PQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~-~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+. . +.+++++|+||.++.+|.|+ ||+++++ + +++.+..... ....+...++++...|+
T Consensus 192 -~~----~----~~di~~~S~sK~~~~~~~~~~G~v~~~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 253 (389)
T 3acz_A 192 -LE----L----GADIALHSVSKYINGHGDVIGGVSSAKTAE-DIATIKFYRKDAGSLMAPMDAFLCARGMK 253 (389)
T ss_dssp -GG----T----TCSEEEEETTTTTTCSSCCCCEEEEESSHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred -cc----c----CCeEEEECChhhccCCCCceeEEEEECcHH-HHHHHHHHHHhcCCCCCHHHHHHHHcCcc
Confidence 11 1 36799999999999999998 9999998 6 8888876542 34456677777777773
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=198.27 Aligned_cols=192 Identities=13% Similarity=0.063 Sum_probs=149.8
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEE
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVN 722 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~ 722 (903)
..+..+..+.+++.+++.+|.+ + .+++++| ++++..++.+++++||+|+++.|+|+.+...+ +..|++++.
T Consensus 60 ~r~~~~~~~~l~~~la~~~g~~-~---~i~~~sG-~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~ 134 (398)
T 1gc0_A 60 SRISNPTLNLLEARMASLEGGE-A---GLALASG-MGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRH 134 (398)
T ss_dssp ---CCHHHHHHHHHHHHHHTCS-E---EEEESSH-HHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEE
T ss_pred cCCCChHHHHHHHHHHHHhCCC-c---EEEECCH-HHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEE
Confidence 3334566778888888888865 2 5777777 59999999999999999999999999987766 667999999
Q ss_pred ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCC
Q 043334 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGW 802 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~ 802 (903)
++.+ |++.+++.+++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|....+..
T Consensus 135 ~~~~-------d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~---l~~i~~l~~~~~~~li~D~~~~~~~~~~------ 196 (398)
T 1gc0_A 135 VDMA-------DLQALEAAMTPAT-RVIYFESPA-NPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR------ 196 (398)
T ss_dssp ECTT-------CHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC------
T ss_pred ECCC-------CHHHHHHhcCCCC-eEEEEECCC-CCCccccc---HHHHHHHHHHcCCEEEEECCCcccccCC------
Confidence 9862 7899999998765 599999998 99999997 8899999999999999999996443311
Q ss_pred chhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHH-HHHhCCC---CCCCcHHHHHHHHHHHh
Q 043334 803 DLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVD-AFSSFPG---LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~-~l~~~~~---~~~~s~~~Q~aa~~~L~ 874 (903)
+ +. . +.++++.|+||.++.+|+|+ ||++++++ +++ .+..... ....+...++++...++
T Consensus 197 ---~-~~----~----~~d~~~~S~sK~~~~~~~~~~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 260 (398)
T 1gc0_A 197 ---P-LE----L----GADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTGAVLSPHDAALLMRGIK 260 (398)
T ss_dssp ---G-GG----G----TCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred ---c-hh----h----CceEEEECCccccCCCCCCeEEEEEEChH-HHHHHHHHHhhccCCCCCCHHHHHHHHhccc
Confidence 0 11 1 36799999999999999998 99999877 554 4443221 23467777887777773
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=9.8e-18 Score=188.92 Aligned_cols=200 Identities=13% Similarity=0.123 Sum_probs=152.5
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC- 692 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l- 692 (903)
++|+|+. |++ |+.+++++.+.+.+.. +..+..+++++++ +++|.+ ++++++|+++++..++.++
T Consensus 9 ~~i~~~~--p~~--~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la----~~~~~~-----~~~~~~~gt~al~~~~~~~~ 75 (393)
T 1mdo_A 9 DFLPFSR--PAM--GAEELAAVKTVLDSGWITTGPKNQELEAAFC----RLTGNQ-----YAVAVSSATAGMHIALMALG 75 (393)
T ss_dssp CCBCSCC--CCC--CHHHHHHHHHHHHHTCCSSSHHHHHHHHHHH----HHHCCS-----EEEEESCHHHHHHHHHHHTT
T ss_pred cccccCC--CCC--CHHHHHHHHHHHhcCCcCCChHHHHHHHHHH----HHhCCC-----cEEEecChHHHHHHHHHHcC
Confidence 4677775 553 4677888888876532 2223444455554 445542 6999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 693 ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
+++||+|+++.|+|+.+...++..|++++.+++++ +++.+|++++++.+++++ ++|++ + ||||.+.+ +++|
T Consensus 76 ~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~d~~~l~~~l~~~~-~~v~~---~-~~~G~~~~---~~~i 146 (393)
T 1mdo_A 76 IGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQT-KAIIP---V-HYAGAPAD---LDAI 146 (393)
T ss_dssp CCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTE-EEECC---B-CGGGCCCC---HHHH
T ss_pred CCCCCEEEeCCCccHhHHHHHHHCCCEEEEEeccC-CcCCCCHHHHHHhcCCCc-eEEEE---e-CCCCCcCC---HHHH
Confidence 99999999999999999999999999999999975 467899999999997654 45554 3 68999876 8889
Q ss_pred HHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 773 LTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
.++|+++|++||+|++|+. ..+.+... . . .++++.||||+.+++|.|+||++++++++++.
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~~~---------~--------~-~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~ 208 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGRHI---------G--------A-RGTAIFSFHAIKNITCAEGGIVVTDNPQFADK 208 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEET---------T--------S-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHH
T ss_pred HHHHHHcCCeEEEECccccCCeECCeec---------C--------C-CCeEEEeCCCCCccccccceEEEeCCHHHHHH
Confidence 9999999999999999974 34433210 0 0 46899999944455667999999985448888
Q ss_pred HHhC
Q 043334 852 FSSF 855 (903)
Q Consensus 852 l~~~ 855 (903)
+...
T Consensus 209 l~~~ 212 (393)
T 1mdo_A 209 LRSL 212 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-18 Score=190.89 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=152.5
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~ 725 (903)
..+..+.+++.+++.+|.+ ++++++|+++++..++.+++++||+|+++.|+|+.+...+ +..|.+++.++.
T Consensus 64 ~~~~~~~l~~~la~~~g~~-----~~~~~~sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~ 138 (392)
T 3qhx_A 64 GNPTRTALEAALAAVEDAA-----FGRAFSSGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNVEYTPVAL 138 (392)
T ss_dssp CCHHHHHHHHHHHHHTTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTCEEEEECT
T ss_pred CChHHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCcEEEEeCC
Confidence 3445677888888877764 4777777799999999999999999999999999877766 668999999987
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
+ |++++++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|+...+ ..+
T Consensus 139 ~-------d~~~l~~~i~~~~-~~v~~~~~~-nptG~~~~---l~~i~~la~~~g~~li~D~~~~~~~~-~~~------- 198 (392)
T 3qhx_A 139 A-------DLDAVRAAIRPTT-RLIWVETPT-NPLLSIAD---IAGIAQLGADSSAKVLVDNTFASPAL-QQP------- 198 (392)
T ss_dssp T-------CHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHTCEEEEECTTTCTTT-CCG-------
T ss_pred C-------CHHHHHHhhCCCC-eEEEEECCC-CCCcEEec---HHHHHHHHHHcCCEEEEECCCccccc-CCh-------
Confidence 3 7899999998766 599999998 99999988 88999999999999999999963311 111
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
. .. +..+++.|+||.+|.+| .|+||++++++++.+.+..... ....++..++++...++
T Consensus 199 --~----~~----~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~ 260 (392)
T 3qhx_A 199 --L----SL----GADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLK 260 (392)
T ss_dssp --G----GG----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred --H----Hh----CCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhh
Confidence 1 11 35789999999999877 7999999997558888776543 55667777777777773
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=201.61 Aligned_cols=251 Identities=12% Similarity=0.059 Sum_probs=180.0
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCC------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNM------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
.++.|+ +.... ..+.+.+++.+.+..|.+ ..|..++++++++++++.+|.+. .+++++|+++++..++
T Consensus 67 ~~~~lg-~~~~~-~~p~v~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~----~~~~~~ggt~a~~~al 140 (474)
T 1wyu_B 67 TFYPLG-SCTMK-YNPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDA----ITLEPAAGAHGELTGI 140 (474)
T ss_dssp SCCCBT-TTCCC-CCCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSE----EECCCSSHHHHHHHHH
T ss_pred Cccccc-ccccc-CCHHHHHHHHHHHHhcCCCCchhhChHHHHHHHHHHHHHHHHHCCCc----eeecChHHHHHHHHHH
Confidence 467777 44332 234455555544434433 34566889999999999999864 3778899988888655
Q ss_pred HHh----ccCCC-----eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc
Q 043334 690 LCC----ILEGG-----TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT 760 (903)
Q Consensus 690 ~~l----~~pGD-----~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT 760 (903)
.++ .++|| +|+++.|+|+.+...++..|++++.+++++ ++.+|+++|++++++++ ++|++++| |||
T Consensus 141 ~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~--~~~~d~~~L~~~i~~~t-~~v~~~~p--n~~ 215 (474)
T 1wyu_B 141 LIIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGPHV-AALMLTNP--NTL 215 (474)
T ss_dssp HHHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCSTTE-EEEEECSS--CTT
T ss_pred HHHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCC--CCCcCHHHHHHhhCCCc-eEEEEECC--CCC
Confidence 443 46888 999999999999999999999999999864 57799999999998766 58888887 589
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc-c---c
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG-A---L 836 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~-G---l 836 (903)
|.+. +++++|.++|+++|+++|+|++|....++ . .+ ...+ +..+++.|++|+|++| | .
T Consensus 216 G~~~--~~l~~i~~l~~~~g~~li~Dea~~~~~~g-~----~~----~~~~-------g~di~~~s~~K~~~~p~g~gG~ 277 (474)
T 1wyu_B 216 GLFE--RRILEISRLCKEAGVQLYYDGANLNAIMG-W----AR----PGDM-------GFDVVHLNLHKTFTVPHGGGGP 277 (474)
T ss_dssp SCCC--TTHHHHHHHHHHHTCEEEEEGGGGGGTTT-T----CC----HHHH-------TCSEEECCTTTTTCCCCTTSCC
T ss_pred cccC--CCHHHHHHHHHHcCCEEEEeCchhhhhcc-C----CC----cccC-------CCcEEEEeCccccccCCCCCCC
Confidence 9883 35999999999999999999999654432 1 11 1111 2578899999999877 5 5
Q ss_pred eeeEEEeCcHHHHHHHHh-C------------------C--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHH
Q 043334 837 KFGFLVLNHPQLVDAFSS-F------------------P--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLE 895 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~-~------------------~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~ 895 (903)
|+||++++++ +++.+.. + . ...+.+...+.++..++. ..+ .++++++++.+.
T Consensus 278 ~~G~~~~~~~-l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~-~~g-----~~~l~~~~~~~~ 350 (474)
T 1wyu_B 278 GSGPVGVKAH-LAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIR-TLG-----LEGLKKAAALAV 350 (474)
T ss_dssp CCCCEEECGG-GGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHH-HHH-----HHHHHHHHHHHH
T ss_pred CeEEEEEcHH-HHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHH-HHH-----HHHHHHHHHHHH
Confidence 9999999987 7766641 0 0 122356677888877774 112 244555566666
Q ss_pred HHHHHHh
Q 043334 896 SRSKRLK 902 (903)
Q Consensus 896 ~Rr~~l~ 902 (903)
++++++.
T Consensus 351 ~~~~~l~ 357 (474)
T 1wyu_B 351 LNARYLK 357 (474)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-19 Score=187.27 Aligned_cols=185 Identities=19% Similarity=0.185 Sum_probs=112.2
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.+.|++|+|+..+..+.+.+...-....++.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|++|+..++.
T Consensus 2 ~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-- 79 (215)
T 4dzr_A 2 EVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-- 79 (215)
T ss_dssp BCSGGGGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------
T ss_pred cCCCCccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--
Confidence 578999999966665555544322112367899999999999999999998788999999999999999999876653
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
+++++++|+.+.... ..++||+|++||||+.......+......+.+ ..++
T Consensus 80 ---------------~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~---------~~~~-- 133 (215)
T 4dzr_A 80 ---------------VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEP---------RLAL-- 133 (215)
T ss_dssp ------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC-------------------------------
T ss_pred ---------------ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCc---------cccc--
Confidence 689999999885443 11389999999999977665555444332211 1222
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcE-EEEEeCCCCcHHHHHHHHH--HCCCeEEEEEeh
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGI-MIFNMGGRPGQGVCKRLFE--RRGFRVDKLWQT 216 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~-ll~~~~~~~~~~~l~~ll~--~~gf~~~~~~~~ 216 (903)
.++..+.+.+..+++++.++|||||+ +++.++... ...+.++++ +.||..+..+..
T Consensus 134 -~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~l~~~~~gf~~~~~~~~ 192 (215)
T 4dzr_A 134 -DGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQ-ADEVARLFAPWRERGFRVRKVKD 192 (215)
T ss_dssp -----CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSC-HHHHHHHTGGGGGGTEECCEEEC
T ss_pred -cCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCcc-HHHHHHHHHHhhcCCceEEEEEe
Confidence 23567888889999999999999999 666666544 445577888 889977665433
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=195.40 Aligned_cols=256 Identities=11% Similarity=0.055 Sum_probs=180.9
Q ss_pred CCCCCeEEccCCCC--CCC-CcHHHHHHHHHHHHccCC-CC-CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVDQS--FLP-IPSLVKAAIFESFARQNM-SE-SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g~p--~~~-~p~~v~~al~~al~~y~~-~~-G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...+|+..|.+ .++ .++.+.+++.+.+.++.. +. ...+.+.++++.+++.+|. + +|++++|+++++.
T Consensus 73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~----~-~v~~~~sGseA~~ 147 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY----H-KVLPMNTGVEAGE 147 (439)
T ss_dssp TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTC----S-EEEEESSHHHHHH
T ss_pred CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCC----C-EEEEeCCHHHHHH
Confidence 45677899988754 455 789999999998876422 11 2345678888888887762 3 8999999999999
Q ss_pred HHHHHhc---------cCC-CeEEEcCCCcHHHH-HHHHHcC------------CEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 687 KLVLCCI---------LEG-GTLCFPAGSNGNYV-SAARFLK------------ANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 687 ~ll~~l~---------~pG-D~Vlv~~P~y~~~~-~~~~~~G------------~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.++..+. .+| |.|++.+|+|..+. ..+...| .+++.+|. .|++++++.++
T Consensus 148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~d~~~le~~l~ 220 (439)
T 2oat_A 148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECS-------SCHHHHHHHTT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCC-------CCHHHHHHHhC
Confidence 9888765 367 89999999996643 3444444 45666664 27999999985
Q ss_pred cCCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 744 TVKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
... ..+++++|.+|+||. +++.+.+++|.++|++||+++|+||+|.++.+.+... . .....-.+ .+
T Consensus 221 ~~~-~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~---~----~~~~~~~~----Di- 287 (439)
T 2oat_A 221 DPN-VAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL---A----VDYENVRP----DI- 287 (439)
T ss_dssp STT-EEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---G----GGGGTCCC----SE-
T ss_pred CCC-EEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcch---h----HHHhCCCC----cE-
Confidence 323 356677787678996 5799999999999999999999999997765544321 1 11111111 22
Q ss_pred EEccCchhccccc-ceeeEEEeCcHHHHHHHHhC--CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF--PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 823 ~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~--~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
+ ||||.++ +| +|+||++++++ +++.+... ..+.+.+.+.+.++.++|+.-.. +.+.+++.++++.++++.
T Consensus 288 ~--t~sK~l~-~G~~~~G~v~~~~~-~~~~l~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L 360 (439)
T 2oat_A 288 V--LLGKALS-GGLYPVSAVLCDDD-IMLTIKPGEHGSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNEL 360 (439)
T ss_dssp E--EECGGGG-TTSSCCEEEEECHH-HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred E--Eeccccc-CCCCCeEEEEECHH-HHhccCCCCcccCCCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHH
Confidence 2 9999998 68 99999999987 88777653 23667788899988888842111 234455555555555543
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=196.57 Aligned_cols=241 Identities=9% Similarity=0.055 Sum_probs=166.1
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC---CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN---MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~---~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...+|+..| .+.++ .++.+.+++.+.+.+.. ...+..+.+.++++++++.++...+ +|++|+|+++++
T Consensus 41 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~sGseA~ 117 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLT---RVFYSDSGAEAM 117 (448)
T ss_dssp TTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEE---EEEEESSHHHHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCchHHHH
Confidence 456778999866 33444 47889999999887642 2456778899999999998765444 899999999999
Q ss_pred HHHHHHhcc----CC----CeEEEcCCCcHHHHHHHHHcCC-------------EEEEecCCCCCCccc-----------
Q 043334 686 NKLVLCCIL----EG----GTLCFPAGSNGNYVSAARFLKA-------------NIVNIPTESEVGFKM----------- 733 (903)
Q Consensus 686 ~~ll~~l~~----pG----D~Vlv~~P~y~~~~~~~~~~G~-------------~vv~v~~~~~~~f~l----------- 733 (903)
..++..+.. +| |.|++.+|+|..+...+...+. .+..++.. +.|..
T Consensus 118 ~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 195 (448)
T 3dod_A 118 EIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIP--YVYRSESGDPDECRDQ 195 (448)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCC--CCTTSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCC--ccccCCccchhhhhHH
Confidence 999988876 45 9999999999876654433332 22333332 22332
Q ss_pred CHHHHHHHhh--cCCCcEEEEECCCC-CCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh
Q 043334 734 TEKTLVTILE--TVKKPWVYISGPTI-NPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 734 d~~~L~~~l~--~~~~~~vil~~P~~-NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~ 809 (903)
|+++|++.++ +.+ ..++++.|.+ ||+| .+.+.+++++|.++|++||++||+||+|.++.+.+... . ..
T Consensus 196 d~~~le~~l~~~~~~-~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~---a----~~ 267 (448)
T 3dod_A 196 CLRELAQLLEEHHEE-IAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMF---A----CE 267 (448)
T ss_dssp HHHHHHHHHHHHGGG-EEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---G----GG
T ss_pred HHHHHHHHHHhCCCC-EEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchh---h----hh
Confidence 4788998887 223 3566777774 7777 56688889999999999999999999998776555431 1 11
Q ss_pred hhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh-------CC--CCCCCcHHHHHHHHHHHh
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS-------FP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~-------~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
...-.+ -+.+|||+++ .| +|+||++++++ +++.+.. .. .+.+.++++|.++.++|+
T Consensus 268 ~~~~~~-------di~t~sK~l~-~G~~~ig~v~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 333 (448)
T 3dod_A 268 HENVQP-------DLMAAGKGIT-GGYLPIAVTFATED-IYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333 (448)
T ss_dssp GGTCCC-------SEEEECGGGG-TTSSCCEEEEEEHH-HHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHH
T ss_pred hcCCCC-------CEEEeccccc-CCcCceEEEEECHH-HHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHH
Confidence 111111 1347899997 49 59999999987 9998876 32 367788999999999994
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=196.75 Aligned_cols=251 Identities=10% Similarity=0.036 Sum_probs=155.3
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-ccCCC-------CC--chHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-RQNMS-------ES--EIDVTPS 656 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~~-------~G--~~~lr~a 656 (903)
++.++..+.++....+..... ...+.++|..+++.. ++.+.+++.+.+. .|... .| ..+..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~l~~~~~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (425)
T 3ecd_A 9 FSQSLAERDASVRGAILKELE-----RQQSQVELIASENIV--SRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEA 81 (425)
T ss_dssp HHCCHHHHCHHHHHHHHHHHH-----HHHHSEECCTTCCCC--CHHHHHHHTSGGGSSCTTC------------CCHHHH
T ss_pred HHHHHHhhCHHHHHHHHHHHH-----HHhcceeeecccCCC--CHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHH
Confidence 344445455555554443211 112468887777654 8889999888764 22110 11 1123344
Q ss_pred H-HHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHH---HHHHHHHcCC--EEEEecCCCCCC
Q 043334 657 I-QQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGN---YVSAARFLKA--NIVNIPTESEVG 730 (903)
Q Consensus 657 l-a~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~---~~~~~~~~G~--~vv~v~~~~~~~ 730 (903)
+ ++.+++.+|.+.. .++++|+++++..++.+++++||+|+++.|+|+. +.......|. ++++++.+. ++
T Consensus 82 ~a~~~~~~~~~~~~~----~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 156 (425)
T 3ecd_A 82 LAIERVKRLFNAGHA----NVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSR-DT 156 (425)
T ss_dssp HHHHHHHHHHTCSEE----ECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCT-TT
T ss_pred HHHHHHHHHhCCCCc----eeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCc-cc
Confidence 4 4778887886532 3446666778888899999999999999999987 3333334454 666777654 45
Q ss_pred cccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhh
Q 043334 731 FKMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 731 f~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~ 808 (903)
+.+|++++++.+++ ++ ++|++++|+ ||+. . ++++|.++|+++|++||+||+|. ++.+.+... ..+
T Consensus 157 ~~~d~~~l~~~i~~~~~-~~v~~~~~~-~~~~--~---~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~------~~~ 223 (425)
T 3ecd_A 157 MLIDYDQVEALAQQHKP-SLIIAGFSA-YPRK--L---DFARFRAIADSVGAKLMVDMAHIAGVIAAGRHA------NPV 223 (425)
T ss_dssp SSCCHHHHHHHHHHHCC-SEEEEECSC-CCSC--C---CHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSC------CGG
T ss_pred CccCHHHHHHHHhhcCC-cEEEEcccc-CCCc--C---CHHHHHHHHHHcCCEEEEECcChHhhhhccccc------Cch
Confidence 78999999999974 55 589999998 9753 3 37899999999999999999953 333443321 111
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG---LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~---~~~~s~~~Q~aa~~~L 873 (903)
+. ..++++|+||.+ +|+|+||++++++.+.+.+..... ..+++...+.++..++
T Consensus 224 ---~~------~di~~~s~sK~l--~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~ 280 (425)
T 3ecd_A 224 ---EH------AHVVTSTTHKTL--RGPRGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAF 280 (425)
T ss_dssp ---GT------CSEEEEESSGGG--CCCSCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHH
T ss_pred ---hc------CcEEEecCCccc--CCCCcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHH
Confidence 11 248899999987 688999999997557777765432 2234444444444444
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-18 Score=194.69 Aligned_cols=243 Identities=10% Similarity=0.006 Sum_probs=174.2
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc----CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ----NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y----~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
..|...||++.| .+.++ .++.+.+++.+.+.+. ....+..+++.++++++++.++...+ +|++|+|++++
T Consensus 48 ~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~gGseA 124 (460)
T 3gju_A 48 NNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMS---RVYFGLSGSDA 124 (460)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEE---EEEEESSHHHH
T ss_pred CCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcC---EEEEeCchHHH
Confidence 467789999877 34444 5688999998887653 22345678899999999998665444 89999999999
Q ss_pred HHHHHHHhcc--------CCCeEEEcCCCcHHHHHHHHHcCC-------------EEEEecCCC--C-CCcccC------
Q 043334 685 FNKLVLCCIL--------EGGTLCFPAGSNGNYVSAARFLKA-------------NIVNIPTES--E-VGFKMT------ 734 (903)
Q Consensus 685 l~~ll~~l~~--------pGD~Vlv~~P~y~~~~~~~~~~G~-------------~vv~v~~~~--~-~~f~ld------ 734 (903)
+..++.+++. +++.|++.+|+|..+...+...+. .+..++... . +++.++
T Consensus 125 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 204 (460)
T 3gju_A 125 NETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQ 204 (460)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHH
Confidence 9999988874 468999999999876655544322 234444321 0 111233
Q ss_pred --HHHHHHHhhc---CCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 735 --EKTLVTILET---VKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 735 --~~~L~~~l~~---~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
+++|++.++. .+ ..+++++|.+|++|. +++.+.+++|.++|++||+++|+||+|.++...+... ..
T Consensus 205 ~~~~~le~~i~~~~~~~-~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~-------~~ 276 (460)
T 3gju_A 205 HCADKLEEMILAEGPET-IAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMF-------GS 276 (460)
T ss_dssp HHHHHHHHHHHHHCGGG-EEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC-------HH
T ss_pred HHHHHHHHHHHhcCCCC-EEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccc-------hH
Confidence 5888888863 23 356666676577776 7788999999999999999999999998775555331 11
Q ss_pred hhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh-------C--CCCCCCcHHHHHHHHHHHh
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS-------F--PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~-------~--~~~~~~s~~~Q~aa~~~L~ 874 (903)
...+-.+ . +.+|||+++ .| +|+||++++++ +++.+.. . ..+++.++++|.++.++|+
T Consensus 277 ~~~~~~p----d---i~t~sK~l~-gG~~~lg~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 343 (460)
T 3gju_A 277 DHYGIKP----D---LITIAKGLT-SAYAPLSGVIVADR-VWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLE 343 (460)
T ss_dssp HHHTCCC----S---EEEECGGGT-TTSSCCEEEEEEHH-HHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHH
T ss_pred hhcCCCC----C---eeeeehhhc-CCCCCeEEEEECHH-HHHHHhcccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 2222222 1 337899987 45 89999999887 9998852 1 2377889999999999995
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-18 Score=193.98 Aligned_cols=259 Identities=12% Similarity=0.080 Sum_probs=179.6
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...|||..|. +.++ .++.+.+++.+.+.......+..+++.+++++++++++ .++ +|++++|+++++..+
T Consensus 49 ~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~-~v~~~~~g~ea~~~a 124 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYP---FVD-LVRFVNSGTEATMSA 124 (424)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHCT---TCC-EEEEESSHHHHHHHH
T ss_pred CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCC---CCC-EEEEeCCHHHHHHHH
Confidence 3566789998775 3444 68899999999887632223456778999999998875 234 899999999999988
Q ss_pred HHH--hccCCCeEEEcCCCcHHHHHHHH--------------HcCC------EEEEecCCCCCCcccCHHHHHHHhhcC-
Q 043334 689 VLC--CILEGGTLCFPAGSNGNYVSAAR--------------FLKA------NIVNIPTESEVGFKMTEKTLVTILETV- 745 (903)
Q Consensus 689 l~~--l~~pGD~Vlv~~P~y~~~~~~~~--------------~~G~------~vv~v~~~~~~~f~ld~~~L~~~l~~~- 745 (903)
+.. .+.+++.|++.+|+|..+...+. ..|. +++.+|. .|++.+++.+++.
T Consensus 125 l~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 197 (424)
T 2e7u_A 125 LRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPEGLREVLKRRG 197 (424)
T ss_dssp HHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHHHHHHHHHHHG
T ss_pred HHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHHHHHHHHHhCC
Confidence 875 23345889999999987543221 1121 3445543 3789999888631
Q ss_pred CCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
.+..+++++|++++||.++ +.+++++|.++ ++||++||+||+|.++ ..+.. .........+ . +
T Consensus 198 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~~-------~~~~~~~~~~----d---i 261 (424)
T 2e7u_A 198 EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAFG-------GATELLGLKP----D---L 261 (424)
T ss_dssp GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSSTT-------HHHHHHTCCC----S---E
T ss_pred CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccchh-------HHHHHhCCCc----c---h
Confidence 1236788889833499765 79999999999 9999999999999876 33322 1122222222 2 2
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhC----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSF----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.||||+++ +|+|+||++++++ +++.+... . .+.+.+.++|.++.++|+.-.. .+.+.+++.++++.++++.+
T Consensus 262 ~s~sK~l~-~G~~~G~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~ 338 (424)
T 2e7u_A 262 VTLGKILG-GGLPAAAYAGRRE-IMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLK 338 (424)
T ss_dssp EEECGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhh-CCcceEEEEEcHH-HHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHH
Confidence 39999998 5999999999987 88887752 1 2557788999999888842111 13355666666666666654
Q ss_pred H
Q 043334 900 R 900 (903)
Q Consensus 900 ~ 900 (903)
.
T Consensus 339 ~ 339 (424)
T 2e7u_A 339 E 339 (424)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-18 Score=192.21 Aligned_cols=203 Identities=14% Similarity=0.115 Sum_probs=153.3
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCCC-------CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNMS-------ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~~-------~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
++.+.|+.+.+. ++|+.+.+++.+.+.. ++.. .|..+..+.+++.+++++|.+. + +|++|+|+++++.
T Consensus 27 ~~~~yld~~~~~-~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~--~-~v~~~~g~t~al~ 102 (416)
T 1qz9_A 27 EGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARD--G-EVVVTDTTSINLF 102 (416)
T ss_dssp TTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCT--T-SEEECSCHHHHHH
T ss_pred CCeEeecCCCcC-CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHcCCCc--c-cEEEeCChhHHHH
Confidence 467899988876 6678889999888864 2211 1334667788999999888753 3 8999999999998
Q ss_pred HHHHHhc------cCCCe-EEEcCCCcHHHHHHH----HHc--CCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEE
Q 043334 687 KLVLCCI------LEGGT-LCFPAGSNGNYVSAA----RFL--KANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYIS 753 (903)
Q Consensus 687 ~ll~~l~------~pGD~-Vlv~~P~y~~~~~~~----~~~--G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~ 753 (903)
.++.+++ ++||+ |+++.++|+.+...+ +.. |++++.+++ ++++++.+++++ ++|+++
T Consensus 103 ~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~---------~~~l~~~i~~~~-~~v~~~ 172 (416)
T 1qz9_A 103 KVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS---------PEELPQAIDQDT-AVVMLT 172 (416)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS---------GGGHHHHCSTTE-EEEEEE
T ss_pred HHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc---------HHHHHHHhCCCc-eEEEEe
Confidence 8888776 89996 566667888755443 334 999999986 567888887655 589999
Q ss_pred CCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc
Q 043334 754 GPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT 833 (903)
Q Consensus 754 ~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~ 833 (903)
+|+ ||||.+++ +++|.++|+++|++||+|++|+. +... .+ +..+ +..+++.|+||.++
T Consensus 173 ~~~-nptG~~~~---l~~i~~l~~~~~~~li~D~a~~~---g~~~---~~----~~~~-------~~d~~~~s~~K~l~- 230 (416)
T 1qz9_A 173 HVN-YKTGYMHD---MQALTALSHECGALAIWDLAHSA---GAVP---VD----LHQA-------GADYAIGCTYKYLN- 230 (416)
T ss_dssp SBC-TTTCBBCC---HHHHHHHHHHHTCEEEEECTTTT---TTSC---CC----HHHH-------TCSEEEECSSSTTC-
T ss_pred ccc-cCcccccC---HHHHHHHHHHcCCEEEEEccccc---cCcC---CC----hhhc-------CCCEEEecCcccCC-
Confidence 998 99999998 78999999999999999999962 2111 11 1111 24688999999874
Q ss_pred cccee-eEEEeCcHHHHHHHHh
Q 043334 834 GALKF-GFLVLNHPQLVDAFSS 854 (903)
Q Consensus 834 ~GlRi-G~lv~~~~~li~~l~~ 854 (903)
+|.|+ ||++++++ +++.+..
T Consensus 231 ~g~~~~g~l~~~~~-~~~~l~~ 251 (416)
T 1qz9_A 231 GGPGSQAFVWVSPQ-LCDLVPQ 251 (416)
T ss_dssp CCTTCCCEEEECTT-TTTTSCC
T ss_pred CCCCCeEEEEECHH-HHhccCC
Confidence 68888 99999987 7665543
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=194.96 Aligned_cols=259 Identities=12% Similarity=0.062 Sum_probs=179.5
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..+...+|++.|. +.++ .++.+.+++.+.+.+.....+..+++.++++.+++.++ .++ +|++++|+++++..+
T Consensus 53 ~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~~~la~~~~---~~~-~v~~~~sgseA~~~a 128 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILGHKHPRVLEAVEEALARGWLYGAPGEAEVLLAEKILGYVK---RGG-MIRFVNSGTEATMTA 128 (434)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTCSCCSSCCHHHHHHHHHHHHHHC---TTC-EEEEESSHHHHHHHH
T ss_pred CCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHhCC---CCC-EEEEeCCHHHHHHHH
Confidence 3567789998775 3343 68889999999887632223456678889999988874 234 899999999999998
Q ss_pred HHHh--ccCCCeEEEcCCCcHHHHHHHH--------------HcCC------EEEEecCCCCCCcccCHHHHHHHhhcC-
Q 043334 689 VLCC--ILEGGTLCFPAGSNGNYVSAAR--------------FLKA------NIVNIPTESEVGFKMTEKTLVTILETV- 745 (903)
Q Consensus 689 l~~l--~~pGD~Vlv~~P~y~~~~~~~~--------------~~G~------~vv~v~~~~~~~f~ld~~~L~~~l~~~- 745 (903)
+... ..+++.|++.+|+|..+...+. ..|+ +++.++. .|++++++.+++.
T Consensus 129 l~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 201 (434)
T 2epj_A 129 IRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVEALERVFAEYG 201 (434)
T ss_dssp HHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHHHHHHHHHHHG
T ss_pred HHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHHHHHHHHHhCC
Confidence 8861 3456788888899876433211 1232 3555553 2789999988741
Q ss_pred CCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
.+..+++++|++||||.++ +.+++++|.++|++||+++|+||+|.++ ..+.. .........+ . +
T Consensus 202 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~~-------~~~~~~~~~~----d---i 266 (434)
T 2epj_A 202 DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGLE-------GAQGYFNIEG----D---I 266 (434)
T ss_dssp GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSSTT-------HHHHHHTCCC----S---E
T ss_pred CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCcc-------hhhHHhCCCC----C---e
Confidence 1236777888767899876 7999999999999999999999999876 32321 1122222222 1 3
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhC----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSF----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.||||.++. |+|+||++++++ +++.+... . .+.+.+.+++.++.++|+.-.. +.+.+++.+.++.++++.+
T Consensus 267 ~s~sK~l~~-G~~~G~v~~~~~-~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~ 342 (434)
T 2epj_A 267 IVLGKIIGG-GFPVGAVAGSRE-VMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAAS 342 (434)
T ss_dssp EEEEGGGGT-TSSCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred eeecchhcC-CcceeeeeecHH-HHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 499999985 999999999986 88877652 2 2557788899888888842111 2345566666666666554
Q ss_pred H
Q 043334 900 R 900 (903)
Q Consensus 900 ~ 900 (903)
.
T Consensus 343 ~ 343 (434)
T 2epj_A 343 E 343 (434)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=194.54 Aligned_cols=258 Identities=11% Similarity=0.048 Sum_probs=175.3
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...+|++.|. +.++ .++.+.+++.+.+.+.....+..+.+.++++++++.++ . ++ +|++|+|+++++..+
T Consensus 49 ~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~--~~-~v~~~~ggsea~~~a 124 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVP-S--IE-MVRFVNSGTEACMAV 124 (427)
T ss_dssp TTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-T--CS-EEEEESSHHHHHHHH
T ss_pred CCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhCC-C--CC-EEEEeCCHHHHHHHH
Confidence 4577899998775 4444 58899999999886643222356788999999999876 3 34 899999999999998
Q ss_pred HHHhc--cCCCeEEEcCCCcHHHHHHHHHc-CC-------------------EEEEecCCCCCCcccCHHHHHHHhhcC-
Q 043334 689 VLCCI--LEGGTLCFPAGSNGNYVSAARFL-KA-------------------NIVNIPTESEVGFKMTEKTLVTILETV- 745 (903)
Q Consensus 689 l~~l~--~pGD~Vlv~~P~y~~~~~~~~~~-G~-------------------~vv~v~~~~~~~f~ld~~~L~~~l~~~- 745 (903)
+.... ..++.|++.+|+|..+...+... |. .++.++. -|+++|++.+++.
T Consensus 125 l~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~ 197 (427)
T 3fq8_A 125 LRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFAENP 197 (427)
T ss_dssp HHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEET-------TCHHHHHHHHHHST
T ss_pred HHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCC-------CCHHHHHHHHHhCC
Confidence 84332 24578999999986543322111 11 1222222 1799999998763
Q ss_pred CCcEEEEECCCCCCcccCCC-HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEE
Q 043334 746 KKPWVYISGPTINPTGLLYS-NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLL 824 (903)
Q Consensus 746 ~~~~vil~~P~~NPTG~v~s-~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l 824 (903)
....+++++|.+|++|.+.+ .+++++|.++|++||++||+||+|.++ ..+... ........ .-+
T Consensus 198 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~-------~~~~~~~~-------~di 262 (427)
T 3fq8_A 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAYGG-------VQEKFGVT-------PDL 262 (427)
T ss_dssp TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBTTH-------HHHHTTCC-------CSE
T ss_pred CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcch-------hhHhcCCC-------CCh
Confidence 12356666666477777665 566999999999999999999999876 443321 11222211 124
Q ss_pred ccCchhcccccceeeEEEeCcHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 825 GGLSLKMLTGALKFGFLVLNHPQLVDAFSSF-----PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 825 ~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~-----~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
.||||+++ +|+|+||++++++ +++.+... ...++.+.+.+.++.++|+.-.. +.+.+.+.+.++.++++.+
T Consensus 263 ~t~sK~~~-~G~~~G~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~ 338 (427)
T 3fq8_A 263 TTLGKIIG-GGLPVGAYGGKRE-IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLL 338 (427)
T ss_dssp EEECGGGG-TTSSCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhh-CCcceEEEEEcHH-HHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 68999998 8999999999887 88888752 22566789999999988852111 2344555555555555443
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.8e-18 Score=197.80 Aligned_cols=178 Identities=12% Similarity=0.103 Sum_probs=147.6
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCCCcE--EecCchHHHHHHHHHHhccCC--------CeEEEcCCCcHHHHHHHHHcCC
Q 043334 649 SEIDVTPSIQQYIKSNFGFPIDINAEF--IYADCSQSLFNKLVLCCILEG--------GTLCFPAGSNGNYVSAARFLKA 718 (903)
Q Consensus 649 G~~~lr~ala~~l~~~~G~~~~pe~~I--~vt~Gs~~al~~ll~~l~~pG--------D~Vlv~~P~y~~~~~~~~~~G~ 718 (903)
+...+.+++++++++.+|.+.+++ ++ ++|+|+++++..++.++.++| |+|+++.|+|..+...++..|+
T Consensus 136 ~~~~le~~l~~~la~~~g~~~~~~-~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~ 214 (514)
T 3mad_A 136 STAKFEAEVVAMTAHMLGGDAAGG-TVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYFGI 214 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGGTS-CCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCccC-CcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHcCC
Confidence 345677889999999999886444 67 999999999999999998887 9999999999999999999999
Q ss_pred EEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccC---
Q 043334 719 NIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFN--- 795 (903)
Q Consensus 719 ~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~--- 795 (903)
+++.+|++. ++.+|+++|++++++++ ++|++++|+ ||||.+.+ +++|.++|+++|++||+|++|+++.+.
T Consensus 215 ~v~~v~~~~--~~~~d~~~Le~~i~~~~-~~v~~~~~~-nptG~~~~---l~~i~~la~~~~i~livDea~~~~~~~~~~ 287 (514)
T 3mad_A 215 KLVRTPLDA--DYRADVAAMREAITPNT-VVVAGSAPG-YPHGVVDP---IPEIAALAAEHGIGCHVDACLGGFILPWAE 287 (514)
T ss_dssp EEEEECBCT--TSCBCHHHHHHHCCTTE-EEEEEETTC-TTTCCCCC---HHHHHHHHHHHTCEEEEECTTTTTTHHHHH
T ss_pred eeEEeeeCC--CCCCCHHHHHHHhccCC-EEEEEeCCC-CCCccccC---HHHHHHHHHHhCCeEEEecccccccchhHH
Confidence 999999975 67899999999998766 589999998 99999988 788999999999999999999876541
Q ss_pred --CCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 796 --YEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 796 --~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+...+ . +.. .. .+..+++.|++|.+ .+|.++||++++++
T Consensus 288 ~~g~~~~-----~-~~~--~~---~g~d~~~~s~~K~l-~~~~~~g~~~~~~~ 328 (514)
T 3mad_A 288 RLGYPVP-----P-FDF--RL---EGVTSVSADTHKYG-YGAKGTSVILYRRP 328 (514)
T ss_dssp HTTCCCC-----C-CST--TS---TTCCEEEECTTTTT-CCCSSCEEEEESSH
T ss_pred hcCCCCC-----c-ccc--cC---CCCcEEEECchhcc-CCCCCeEEEEEeCH
Confidence 11100 0 110 01 13578899999986 47889999999987
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=187.91 Aligned_cols=204 Identities=13% Similarity=0.147 Sum_probs=146.7
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHcc--C-CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQ--N-MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC 691 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y--~-~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~ 691 (903)
+++++++.|.|.++ +.+.+++.+.+... . ...+..+++++++++ +|.+ ++++++|+++++..++.+
T Consensus 22 ~~~~~l~~~~p~~~--~~~~~a~~~~~~~~~~~~~~~~~~~l~~~la~~----~~~~-----~~i~~~~gt~al~~~l~~ 90 (391)
T 3dr4_A 22 SDLPRISVAAPRLD--GNERDYVLECMDTTWISSVGRFIVEFEKAFADY----CGVK-----HAIACNNGTTALHLALVA 90 (391)
T ss_dssp ------CCCCCCCC--SSHHHHHHHHHHHTCCSSCSHHHHHHHHHHHHH----HTCS-----EEEEESSHHHHHHHHHHH
T ss_pred CCCceeccCCCCCC--HHHHHHHHHHHHcCCccCCChHHHHHHHHHHHH----hCCC-----cEEEeCCHHHHHHHHHHH
Confidence 46889999998664 66777777776542 2 233444555555554 4543 466777778999999999
Q ss_pred h-ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 692 C-ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 692 l-~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+ +++||+|+++.|+|+.+...++..|++++.+++++ ++|.+|++.+++.+++++ ++|+ |+ ||||.+.+ ++
T Consensus 91 ~~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~~~~-~~v~---~~-n~tG~~~~---~~ 161 (391)
T 3dr4_A 91 MGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDP-RTFNLDAAKLEALITPRT-KAIM---PV-HLYGQICD---MD 161 (391)
T ss_dssp HTCCTTCEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCGGGSGGGCCTTE-EEEC---CB-CGGGCCCC---HH
T ss_pred cCCCCcCEEEECCCchHHHHHHHHHCCCEEEEEecCc-cccCcCHHHHHHhcCCCc-eEEE---EE-CCCCChhh---HH
Confidence 9 99999999999999999999999999999999975 457899999999987654 3444 77 99999877 78
Q ss_pred HHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
+|.++|+++|++||+|++|+. ..+.+... ... ..+.+.||||..+++|.+.||++++++.+.
T Consensus 162 ~i~~l~~~~~~~li~D~a~~~g~~~~~~~~------------~~~-----~di~~~S~s~~K~l~~g~gg~~~~~~~~~~ 224 (391)
T 3dr4_A 162 PILEVARRHNLLVIEDAAEAVGATYRGKKS------------GSL-----GDCATFSFFGNAIITTGEGGMITTNDDDLA 224 (391)
T ss_dssp HHHHHHHHTTCEEEEECTTCTTCEETTEET------------TSS-----SSEEEEECBTTSSSCCBSCEEEEESCHHHH
T ss_pred HHHHHHHHcCCEEEEECcccccceECCeee------------ccc-----CCEEEEECCCCCcCCcCCeEEEEECCHHHH
Confidence 899999999999999999974 33332210 111 136778877333445678999999887677
Q ss_pred HHHHhC
Q 043334 850 DAFSSF 855 (903)
Q Consensus 850 ~~l~~~ 855 (903)
+.+...
T Consensus 225 ~~~~~~ 230 (391)
T 3dr4_A 225 AKMRLL 230 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.6e-18 Score=196.61 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=170.7
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc---CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ---NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y---~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...+|+..| .+.++ .++.+.+++.+.+.+. ....+..+.+.++++++++.++... ++ +|++|+|+++++
T Consensus 58 ~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~-~~-~v~~~~sGseA~ 135 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRG-DK-RSALFNSGSEAV 135 (451)
T ss_dssp TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCS-SE-EEEEESSHHHHH
T ss_pred CCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCC-CC-EEEEeCcHHHHH
Confidence 466778999876 45555 4889999999888653 2234677888999999999876432 23 899999999999
Q ss_pred HHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCC--------------EEEEecCCCC----------CCcc-cCHHHH
Q 043334 686 NKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKA--------------NIVNIPTESE----------VGFK-MTEKTL 738 (903)
Q Consensus 686 ~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~--------------~vv~v~~~~~----------~~f~-ld~~~L 738 (903)
..++..... .++.|++.+++|..+...+...+. .+..+|.... +++. -+++.+
T Consensus 136 ~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 215 (451)
T 3oks_A 136 ENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215 (451)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHH
Confidence 999877654 448999999999876655544322 3455554310 0000 123444
Q ss_pred HHHhh----cCCCcEEEEECCCCCCcc--cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc
Q 043334 739 VTILE----TVKKPWVYISGPTINPTG--LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY 812 (903)
Q Consensus 739 ~~~l~----~~~~~~vil~~P~~NPTG--~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~ 812 (903)
++.+. +.+ .+++++.|. |++| .+.+.+.+++|.++|++||++||+||+|.++.+.+... . .....
T Consensus 216 ~~~l~~~~~~~~-~aavi~ep~-~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~---~----~~~~~ 286 (451)
T 3oks_A 216 ITVIDKQIGADN-LAAVVIEPI-QGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMF---A----CEHEG 286 (451)
T ss_dssp HHHHHHHTCGGG-EEEEEECSS-BTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---G----GGGGT
T ss_pred HHHHHhhcCCCC-EEEEEEcCC-cCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccch---h----hhhcC
Confidence 44443 233 478888998 6666 34477789999999999999999999998776555431 1 12222
Q ss_pred cCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHh
Q 043334 813 SSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 813 ~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~ 874 (903)
..+ . +.||||+++. |||+||++++++ +++.+.... .+++.+++.|.++.++|+
T Consensus 287 ~~p----d---i~t~sK~l~~-G~~iG~v~~~~~-~~~~~~~~~~~~t~~~~~~~~aaa~aal~ 341 (451)
T 3oks_A 287 IDP----D---LIVTAKGIAG-GLPLSAVTGRAE-IMDSPHVSGLGGTYGGNPIACAAALATIE 341 (451)
T ss_dssp CCC----S---EEEECGGGGT-TSSCEEEEEEHH-HHTCSCTTSBCCSSSSCHHHHHHHHHHHH
T ss_pred CCC----C---eeeehhhhhC-CcceEEEEECHH-HHhhhcCCCcCCCCCCCHHHHHHHHHHHH
Confidence 221 1 2389999985 999999999877 888776443 377889999999999995
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=201.84 Aligned_cols=227 Identities=7% Similarity=-0.040 Sum_probs=161.1
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-cC---CC---C----CchHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-QN---MS---E----SEIDVTP 655 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~---~~---~----G~~~lr~ 655 (903)
+++++..+.++.+..+..... ...+.|+|..+++ ++|+.+++++.+.+.. |. +. + +..++.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~L~a~e~--~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~ 93 (483)
T 1rv3_A 21 LAQPLKDSDAEVYDIIKKESN-----RQRVGLELIASEN--FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELET 93 (483)
T ss_dssp TTSCHHHHCHHHHHHHHHHHH-----HHHSSEECCTTCC--CCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHH
T ss_pred HhhhhhhcCHHHHHHHHHHHH-----HhhcCeEEEcCCC--CCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHH
Confidence 344444444444555443221 1246899988876 3688899998887754 21 10 1 1356678
Q ss_pred HHHHHHHhhcCCCCCC-CCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH--------HHHcC--CEEEEec
Q 043334 656 SIQQYIKSNFGFPIDI-NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA--------ARFLK--ANIVNIP 724 (903)
Q Consensus 656 ala~~l~~~~G~~~~p-e~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~--------~~~~G--~~vv~v~ 724 (903)
.+++++++.+|.+.+. ..+|++++|+ +++..++.++++|||+|++++|+|+++... +...| .++++++
T Consensus 94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs-~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~ 172 (483)
T 1rv3_A 94 LCQKRALQAYGLDPQCWGVNVQPYSGS-PANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYK 172 (483)
T ss_dssp HHHHHHHHHTTCCTTTEEEECCCSSHH-HHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEEC
T ss_pred HHHHHHHHHhCCCcccCceEEEECCcH-HHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECc
Confidence 8889999999987531 0159999999 777777888999999999999988876532 23344 5667776
Q ss_pred CCCCCCcccCHHHHHHHhh-cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCC
Q 043334 725 TESEVGFKMTEKTLVTILE-TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGW 802 (903)
Q Consensus 725 ~~~~~~f~ld~~~L~~~l~-~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~ 802 (903)
+++ ++|.+|+++|++.++ .++ ++|++ +++ ||+ .+++ +++|.++|+++|++||+|++|. ++.+.+...
T Consensus 173 ~~~-~~~~iD~d~le~~i~~~~t-klIi~-~~s-n~~-~~~d---l~~i~~ia~~~g~~livD~ah~~g~~~~~~~~--- 241 (483)
T 1rv3_A 173 VNP-DTGYIDYDRLEENARLFHP-KLIIA-GTS-CYS-RNLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP--- 241 (483)
T ss_dssp BCT-TTCSBCHHHHHHHHHHHCC-SEEEE-CCS-SCC-SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC---
T ss_pred ccc-CCCcCCHHHHHHHHhhcCC-cEEEE-eCC-cCC-CcCC---HHHHHHHHHHcCCEEEEEccchhcccccCCCC---
Confidence 664 358899999999998 666 47777 887 998 8887 8899999999999999999985 344433221
Q ss_pred chhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 803 DLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
..+ + ...+++.|+||++ +|+|.||++++++
T Consensus 242 ---~p~---~------~~div~~s~~K~l--~GprgG~i~~~~~ 271 (483)
T 1rv3_A 242 ---SPF---E------HCHVVTTTTHKTL--RGCRAGMIFYRRG 271 (483)
T ss_dssp ---CGG---G------TCSEEEEESSGGG--CCCSCEEEEEECS
T ss_pred ---CCC---C------CCcEEEecCcccC--CCCCceEEEEcch
Confidence 011 1 1357899999987 5999999999874
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=192.00 Aligned_cols=188 Identities=16% Similarity=0.115 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~ 726 (903)
.+..+.+++.+++.+|.+ + .|++++|+ +++..++.+++++||+|+++.|+|+.+... ++..|++++.++.+
T Consensus 113 ~~~~~~l~~~lA~l~g~~-~---~v~~~sG~-~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~ 187 (445)
T 1qgn_A 113 NPTTVVLEEKISALEGAE-S---TLLMASGM-CASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 187 (445)
T ss_dssp CHHHHHHHHHHHHHHTCS-E---EEEESCHH-HHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHhCCC-c---EEEeCCHH-HHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC
Confidence 355677888888888874 2 68888887 999999999999999999999999987764 45679999999863
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
|++++++++++++.++|++++|+ ||||.+.+ +++|.++|+++|+++|+|++|....+. .+
T Consensus 188 -------d~~~l~~ai~~~tv~lV~le~p~-NptG~v~d---l~~I~~la~~~g~~livD~a~~~~~~~-~~-------- 247 (445)
T 1qgn_A 188 -------DVGALELALNQKKVNLFFTESPT-NPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQ-KA-------- 247 (445)
T ss_dssp -------CHHHHHHHHHHSCEEEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTC-CT--------
T ss_pred -------CHHHHHHHhccCCCCEEEEeCCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCCcccccC-Cc--------
Confidence 78999999988773499999998 99999998 789999999999999999999643211 11
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
. .. +..++++|+||.+|..| .|+||++++++ +++.+..... ....+....+++...+
T Consensus 248 -~----~~----g~Div~~S~sK~~gg~gd~~~G~l~~~~~-l~~~l~~~~~~~g~~~~~~~a~~~~~~l 307 (445)
T 1qgn_A 248 -L----AL----GADLVLHSATKFLGGHNDVLAGCISGPLK-LVSEIRNLHHILGGALNPNAAYLIIRGM 307 (445)
T ss_dssp -T----TT----TCSEEEECTTTTTTCSSSCCCEEEEECHH-HHHHHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred -c----cc----CCEEEEECCcccccccccceEEEEEECHH-HHHHHHHHHHHhCCCCCHHHHHHHHHhH
Confidence 1 11 35689999999998655 47999999887 8888765443 2224444445444445
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=193.17 Aligned_cols=185 Identities=12% Similarity=0.104 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~~ 727 (903)
+..+.+++.+++++|.+ + .|++++| ++++..++. ++++||+|+++.|+|++... .++..|++++.++++
T Consensus 55 ~~~~~lr~~la~~~g~~-~---~i~~~sG-t~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~- 127 (393)
T 1n8p_A 55 PNRENLERAVAALENAQ-Y---GLAFSSG-SATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSFTNDL- 127 (393)
T ss_dssp HHHHHHHHHHHHHTTCS-E---EEEESCH-HHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEEESSH-
T ss_pred hhHHHHHHHHHHHhCCC-c---EEEECCh-HHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEEeCCC-
Confidence 34556666677777764 2 5777777 799999999 89999999999999985544 346679999999873
Q ss_pred CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC----CcEEEEecCCCCCccCCCCCCCCc
Q 043334 728 EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY----GARVVIDTAFSGLEFNYEGWGGWD 803 (903)
Q Consensus 728 ~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~----~i~VI~DeaY~~l~f~~~~~s~~s 803 (903)
| +++++++++++ ++|++++|+ ||||.+++ +++|.++|+++ |+++|+|++|+.+.+. .
T Consensus 128 ------d-~~l~~~i~~~t-~lv~~~~~~-nptG~~~~---l~~i~~la~~~~~~~~~~livD~a~~~~~~~--~----- 188 (393)
T 1n8p_A 128 ------L-NDLPQLIKENT-KLVWIETPT-NPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYIS--N----- 188 (393)
T ss_dssp ------H-HHHHHHSCSSE-EEEEECSSC-TTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHC--C-----
T ss_pred ------h-HHHHHhcccCc-eEEEEECCC-CCcceecC---HHHHHHHHHHhCCCCCCEEEEeCCccccccC--C-----
Confidence 6 88999888766 589999998 99999998 88899999999 9999999999765442 1
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
... + +.++++.|+||.+|.+|+|+ ||++++++++++.+..... ....+...+.++...+
T Consensus 189 ---~~~-~-------~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l 250 (393)
T 1n8p_A 189 ---PLN-F-------GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGL 250 (393)
T ss_dssp ---GGG-G-------TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred ---HHH-c-------CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhcc
Confidence 111 1 25799999999999999999 9999964448888776533 2344555666555555
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=186.41 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=152.4
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-c
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-I 693 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~ 693 (903)
.++++++.+.|+++. +.+++.+.+..... +..+..+.+++.+++++|.+ ++++++|+++++..++.++ +
T Consensus 6 ~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~-----~~~~~~~gt~a~~~~~~~~~~ 75 (374)
T 3uwc_A 6 VPYSYLERQFADIEP---YLNDLREFIKTADF--TLGAELEKFEKRFAALHNAP-----HAIGVGTGTDALAMSFKMLNI 75 (374)
T ss_dssp BCSCCHHHHTSSCHH---HHHHHHHHHHHTCC--SSCHHHHHHHHHHHHHTTCS-----EEEEESCHHHHHHHHHHHTTC
T ss_pred ceeeccccCCCCchH---HHHHHHHHHHcCCc--ccChhHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHcCC
Confidence 457788888776543 78888877654322 22233344455555555543 4777777788999999999 9
Q ss_pred cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 694 LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 694 ~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
++||+|+++.|+|+.+...++..|++++.++++ +++.+|++++++.+++++ ++|+ |+ ||||.+.+ +++|.
T Consensus 76 ~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~d~~~l~~~~~~~~-~~v~---~~-n~~G~~~~---~~~i~ 145 (374)
T 3uwc_A 76 GAGDEVITCANTFIASVGAIVQAGATPVLVDSE--NGYVIDPEKIEAAITDKT-KAIM---PV-HYTGNIAD---MPALA 145 (374)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHTTCEEEEECBC--TTSSBCGGGTGGGCCTTE-EEEC---CB-CGGGCCCC---HHHHH
T ss_pred CCCCEEEECCCccHHHHHHHHHcCCEEEEEecC--CCCCcCHHHHHHhCCCCc-eEEE---Ee-CCcCCcCC---HHHHH
Confidence 999999999999999999999999999999997 467799999999987654 3444 87 99999987 88899
Q ss_pred HHHHhCCcEEEEecCCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEeCcHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~~~~~li~ 850 (903)
++|+++|+++|+|++|+.. .|++... .. ...+++.|+| |.++.+|. .||++++++++.+
T Consensus 146 ~~~~~~~~~li~D~~~~~g~~~~~~~~------------~~-----~~d~~~~s~~~~K~l~~~g~-~g~~~~~~~~~~~ 207 (374)
T 3uwc_A 146 KIAKKHNLHIVEDACQTILGRINDKFV------------GS-----WGQFACFSLHPLKNLNVWSD-AGVIITHSDEYAE 207 (374)
T ss_dssp HHHHHTTCEEEEECTTCTTCEETTEET------------TS-----SSSEEEEECSSSSSSCCSSC-CEEEEESCHHHHH
T ss_pred HHHHHcCCEEEEeCCCccCceeCCeec------------cc-----cccEEEEeCCCCCcCCccce-eEEEEeCCHHHHH
Confidence 9999999999999999753 2332221 11 1356778866 99975575 8999998866777
Q ss_pred HHHhCC
Q 043334 851 AFSSFP 856 (903)
Q Consensus 851 ~l~~~~ 856 (903)
.+....
T Consensus 208 ~~~~~~ 213 (374)
T 3uwc_A 208 KLRLYR 213 (374)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776543
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-18 Score=188.60 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=155.1
Q ss_pred CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcH
Q 043334 629 IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNG 707 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~ 707 (903)
.++.+.+++.+.+...... ..+..+.+++.+++++|.+ ++++++|+++++..++.++ +++||+|+++.|+|+
T Consensus 14 ~~~~v~~a~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~-----~~~~~~sGt~al~~al~~~~~~~gd~Vi~~~~~~~ 86 (367)
T 3nyt_A 14 IKDKIDAGIQRVLRHGQYI--LGPEVTELEDRLADFVGAK-----YCISCANGTDALQIVQMALGVGPGDEVITPGFTYV 86 (367)
T ss_dssp HHHHHHHHHHHHHHHCCCS--SCHHHHHHHHHHHHHHTCS-----EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSSCT
T ss_pred cCHHHHHHHHHHHhcCCcc--CChHHHHHHHHHHHHhCCC-----cEEEeCCHHHHHHHHHHHhCCCCcCEEEECCCccH
Confidence 4567777777776553222 1222344445555555643 5888888899999999998 899999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEec
Q 043334 708 NYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDT 787 (903)
Q Consensus 708 ~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~De 787 (903)
.+...++..|++++.+++++ ++|.+|++++++++++++ ++|+ |+ ||||...+ +++|.++|+++|++||+|+
T Consensus 87 ~~~~~~~~~G~~~~~~~~~~-~~~~~d~~~l~~~i~~~~-~~v~---~~-~~~G~~~~---~~~i~~la~~~~~~li~D~ 157 (367)
T 3nyt_A 87 ATAETVALLGAKPVYVDIDP-RTYNLDPQLLEAAITPRT-KAII---PV-SLYGQCAD---FDAINAIASKYGIPVIEDA 157 (367)
T ss_dssp HHHHHHHHTTCEEEEECBCT-TTCSBCGGGTGGGCCTTE-EEEC---CB-CGGGCCCC---HHHHHHHHHHTTCCBEEEC
T ss_pred HHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHhcCcCC-cEEE---ee-CCccChhh---HHHHHHHHHHcCCEEEEEC
Confidence 99999999999999999975 357899999999987655 2444 87 99998876 8889999999999999999
Q ss_pred CCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCCC-------
Q 043334 788 AFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFPG------- 857 (903)
Q Consensus 788 aY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~~------- 857 (903)
+|+. ..+++... ... ..+++.|| +|.++.+|. .|+++++++++.+.+.....
T Consensus 158 a~~~g~~~~~~~~------------~~~-----~di~~~Sf~~~K~l~~~g~-gg~~~~~~~~l~~~~~~~~~~g~~~~~ 219 (367)
T 3nyt_A 158 AQSFGASYKGKRS------------CNL-----STVACTSFFPSAPLGCYGD-GGAIFTNDDELATAIRQIARHGQDRRY 219 (367)
T ss_dssp TTTTTCEETTEET------------TSS-----SSEEEEECCTTSSSCCSSC-CEEEEESCHHHHHHHHHHTBTTEEETT
T ss_pred ccccCCeECCeec------------cCC-----CCEEEEECCCCCcCCCcCc-eeEEEeCCHHHHHHHHHHHhcCCCcCc
Confidence 9963 33443221 111 25788897 899986687 89999987668887776432
Q ss_pred -------CCCCcHHHHHHHHHHH
Q 043334 858 -------LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 858 -------~~~~s~~~Q~aa~~~L 873 (903)
....+.....++...+
T Consensus 220 ~~~~~g~~~~~~~~~aa~~~~~l 242 (367)
T 3nyt_A 220 HHIRVGVNSRLDTLQAAILLPKL 242 (367)
T ss_dssp EECSCCCBCCCCHHHHHHHHHHH
T ss_pred eeeccCcCCCccHHHHHHHHHHH
Confidence 2345555555555555
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=192.27 Aligned_cols=242 Identities=10% Similarity=0.009 Sum_probs=165.7
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...+|+..|. +.++ .++.+.+++.+.+.+.....+..+....+++.+++.++ . ++ +|++|+|+++++..+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-~--~~-~v~~~~~Gsea~~~a 125 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSFGAPTEIENKLAKLVIERVP-S--IE-IVRMVNSGTEATMSA 125 (429)
T ss_dssp TTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCCSSCCHHHHHHHHHHHHHST-T--CS-EEEEESSHHHHHHHH
T ss_pred CCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCcCCCCHHHHHHHHHHHHhCC-C--CC-EEEEeCChHHHHHHH
Confidence 4677899998764 4555 58999999999887643323334566778888887765 2 34 899999999999998
Q ss_pred HHHhcc--CCCeEEEcCCCcHHHHHHHH-HcCCEEEEecCCCCCCcc------------cCHHHHHHHhhcC-CCcEEEE
Q 043334 689 VLCCIL--EGGTLCFPAGSNGNYVSAAR-FLKANIVNIPTESEVGFK------------MTEKTLVTILETV-KKPWVYI 752 (903)
Q Consensus 689 l~~l~~--pGD~Vlv~~P~y~~~~~~~~-~~G~~vv~v~~~~~~~f~------------ld~~~L~~~l~~~-~~~~vil 752 (903)
+..+.. +++.|++.+|+|..+...+. ..|..+..++.....++. -|+++++++++.. ....+++
T Consensus 126 i~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi 205 (429)
T 3k28_A 126 LRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVI 205 (429)
T ss_dssp HHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEE
T ss_pred HHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEE
Confidence 877754 66899999999865443322 222211111111111111 1789999888732 1236777
Q ss_pred ECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
++|++|++|.+. +.+++++|.++|++||++||+||+|.++ ..+.. .........+ -+.||||++
T Consensus 206 ~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~-------~~~~~~~~~~-------di~t~sK~~ 270 (429)
T 3k28_A 206 VEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYN-------CGQGYYGVTP-------DLTCLGKVI 270 (429)
T ss_dssp ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTT-------HHHHHHTCCC-------SEEEECGGG
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcc-------hHHHHhCCCC-------ceehhhhhh
Confidence 778745556554 6888999999999999999999999877 44432 1122222221 235799999
Q ss_pred ccccceeeEEEeCcHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHh
Q 043334 832 LTGALKFGFLVLNHPQLVDAFSSF-----PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 832 g~~GlRiG~lv~~~~~li~~l~~~-----~~~~~~s~~~Q~aa~~~L~ 874 (903)
+ .|+|+||++++++ +++.+... ..+++.+.++|.++.++|+
T Consensus 271 ~-~G~~iG~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~ 316 (429)
T 3k28_A 271 G-GGLPVGAYGGKAE-IMRQVAPSGPIYQAGTLSGNPLAMAAGYETLV 316 (429)
T ss_dssp G-TTSCCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHH
T ss_pred c-CCCCeEEEEEcHH-HHhhhccCCCccccCCCCCChHHHHHHHHHHH
Confidence 8 5999999999887 88887652 2267788999999999995
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=190.59 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcC-CCcHHHHHHH----------HHcCCEE
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPA-GSNGNYVSAA----------RFLKANI 720 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~-P~y~~~~~~~----------~~~G~~v 720 (903)
..++++++++++.+|.+.... ++++++| ++++..++.++++|||+|+++. |.|+.+...+ +..|+++
T Consensus 65 ~~~~~l~~~la~~~g~~~~~~-~i~~~sG-t~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~ 142 (431)
T 3ht4_A 65 IGRDTLEKVYADVFGAEAGLV-RPQIISG-THAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGY 142 (431)
T ss_dssp HHHHHHHHHHHHHTTCSEECC-BTTSCSH-HHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEE
T ss_pred hhHHHHHHHHHHHhCCCcccc-cceeeCH-HHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEE
Confidence 458899999999999875522 4456755 7899999999999999999998 9999988665 3479999
Q ss_pred EEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC-CCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCCCccCCC
Q 043334 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISG-PTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSGLEFNYE 797 (903)
Q Consensus 721 v~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~-P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~l~f~~~ 797 (903)
+.+++++ ++.+|++++++++++++ ++|++++ |+ ||||.+++.+++++|+++|++ +|+++|+|++|+.+.+...
T Consensus 143 ~~v~~~~--~~~~d~e~l~~~l~~~t-k~V~i~~sp~-np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~ 218 (431)
T 3ht4_A 143 NAVPLTE--GGLVDFEAVAAAIHSNT-KMIGIQRSKG-YATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE 218 (431)
T ss_dssp EECCBCT--TSSBCHHHHHHHCCTTE-EEEEEECSCT-TSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred EEeCCCC--CCCcCHHHHHhhcCCCC-eEEEEECCCC-CCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence 9999875 47799999999998766 5888884 76 999999999999999999999 9999999999987765443
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhccc-ccceeeEEEeCcHHHHHHHHh
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT-GALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~-~GlRiG~lv~~~~~li~~l~~ 854 (903)
+ .. . +..++++|+||.+|. .+...||++++++ +++.+..
T Consensus 219 ~---------~~----~----g~Di~~~S~sK~lgg~~~~~GG~v~~~~~-li~~l~~ 258 (431)
T 3ht4_A 219 P---------CH----V----GADLMAGSLIKNPGGGIVKTGGYIVGKEQ-YVEACAY 258 (431)
T ss_dssp G---------GG----T----TCSEEEEETTSGGGTTTCSSCEEEEECHH-HHHHHHH
T ss_pred c---------cc----c----CCeEEEcCccccCCCCCCCceEEEEecHH-HHHHHHH
Confidence 2 11 1 246899999999653 1233499999877 9888876
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=189.34 Aligned_cols=230 Identities=11% Similarity=-0.013 Sum_probs=157.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE 695 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p 695 (903)
..+.+..|++++++++.+.+++.+.+. ...+|..+..+.+++.+++++|.+. .+++ +|+++++..++.+++.+
T Consensus 14 ~~~~~~~~~~~~g~~p~v~~ai~~~~~--~~~~~~~~~~~~l~~~la~~~~~~~----~i~~-~~g~~a~~~a~~~~~~~ 86 (359)
T 3pj0_A 14 PYKLGGNGPRNVGVLTEALQNIDDNLE--SDIYGNGAVIEDFETKIAKILGKQS----AVFF-PSGTMAQQIALRIWADR 86 (359)
T ss_dssp SEESSSSSCCBHHHHHHHTTTSCTTCB--CCBTTBSHHHHHHHHHHHHHHTCSE----EEEE-SCHHHHHHHHHHHHHHH
T ss_pred chhhcCCCccccCCCHHHHHHHHhhcc--cCcccCCHHHHHHHHHHHHHhCCCc----EEEe-CCHHHHHHHHHHHHHhc
Confidence 456677778877778888888776432 2234555566777777777777642 3666 55567888889999999
Q ss_pred CCe--EEEcCCCcHHHH---HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc-ccCCCHHHH
Q 043334 696 GGT--LCFPAGSNGNYV---SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT-GLLYSNKEI 769 (903)
Q Consensus 696 GD~--Vlv~~P~y~~~~---~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT-G~v~s~eel 769 (903)
||. |+++.++|..+. ......|++++.++.+ ++.+|+++++++ .+++ ++|++++|+ ||| |.+++.+++
T Consensus 87 g~~~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~---~~~~d~~~l~~~-~~~~-~~v~~~~p~-n~~~G~~~~~~~l 160 (359)
T 3pj0_A 87 KENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGTA---NQLLTIDDIKSL-REPV-SSVLIELPQ-REIGGQLPAFEEL 160 (359)
T ss_dssp HTCCEEEECTTCHHHHSSTTHHHHHHCCEEEECSCT---TSCCCHHHHHTC-SSCC-SEEEEESSB-GGGTSBCCCHHHH
T ss_pred CCCcEEEEeccceeeehhcchHHHhcCceEEecCCc---CCCcCHHHHHhc-cCCc-eEEEEEecc-cCCCcccCCHHHH
Confidence 987 666666655442 2235679999999873 467999999988 5555 599999998 998 799999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 770 ENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
++|+++|+++|++||+|++|......... .+... +.. ...+++.||||+++.++. ||++++++ ++
T Consensus 161 ~~l~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~----~~~-----~~d~~~~s~sK~~~~~~g--g~~~~~~~-l~ 225 (359)
T 3pj0_A 161 EKISEYCHEQGISLHLDGARLWEITPFYQ---KSAEE----ICA-----LFDSVYVSFYKGIGGIAG--AILAGNDD-FV 225 (359)
T ss_dssp HHHHHHHHHHTCEEEEEETTCGGGHHHHT---CCHHH----HHT-----TCSEEEEESSSTTCCSSC--EEEEECHH-HH
T ss_pred HHHHHHHHHcCCEEEEECcchhcchhhhC---CCHHH----hhc-----cCCEEEEeccccCCCcce--EEEECCHH-HH
Confidence 99999999999999999998532211111 01111 111 123456799999976643 78888876 98
Q ss_pred HHHHhCCC----CCCCcHHHHHHHHHHH
Q 043334 850 DAFSSFPG----LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 850 ~~l~~~~~----~~~~s~~~Q~aa~~~L 873 (903)
+.+..... ........+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~a~~~~l 253 (359)
T 3pj0_A 226 QEAKIWKRRYGGDLISLYPYILSADYYF 253 (359)
T ss_dssp HHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 88876421 2223344444444455
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=195.87 Aligned_cols=251 Identities=12% Similarity=0.035 Sum_probs=169.8
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-ccCC-------CCCchHHH--HH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-RQNM-------SESEIDVT--PS 656 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~-------~~G~~~lr--~a 656 (903)
+..++..+.++.+..+..... ...+.|+|..+++. .++.+++++.+.+. .|.. ..|....+ ++
T Consensus 22 ~~~~l~~~~~~i~~~~~~~~~-----~~~~~i~l~~~~~~--~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~ 94 (447)
T 3h7f_A 22 MSAPLAEVDPDIAELLAKELG-----RQRDTLEMIASENF--VPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVEN 94 (447)
T ss_dssp GGCCHHHHCHHHHHHHHHHHH-----HHHHSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHH
T ss_pred hHHHHHhCCHHHHHHHHHHHH-----HHhCceeEecCCCC--CCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHH
Confidence 445556666666666553211 11257888665554 48889999888774 3321 12333333 55
Q ss_pred HH-HHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH-----HHHHcCCEEEEecCCCCCC
Q 043334 657 IQ-QYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS-----AARFLKANIVNIPTESEVG 730 (903)
Q Consensus 657 la-~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~-----~~~~~G~~vv~v~~~~~~~ 730 (903)
++ +++++.+|.+.. .++ ++|+++++..++.++++|||+|++++|+|..+.. .....+..+++++++. ++
T Consensus 95 ~a~~~la~~~g~~~~---~v~-~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 169 (447)
T 3h7f_A 95 LARDRAKALFGAEFA---NVQ-PHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDP-AT 169 (447)
T ss_dssp HHHHHHHHHHTCSEE---ECC-CSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCT-TT
T ss_pred HHHHHHHHHcCCCce---EEE-eCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCc-cc
Confidence 66 889998887643 333 4555678888899999999999999999876211 1222456778888765 35
Q ss_pred cccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhh
Q 043334 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLS 809 (903)
Q Consensus 731 f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~ 809 (903)
+.+|++++++.++..+.+++++++|+ ||++. ++++|.++|+++|++||+||+|. ++.+.+... ..+
T Consensus 170 ~~~d~~~l~~~i~~~~~~~i~~~~~~-~~~~~-----~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~------~~~- 236 (447)
T 3h7f_A 170 HLIDMDAVRATALEFRPKVIIAGWSA-YPRVL-----DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHP------SPV- 236 (447)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEEECSS-CCSCC-----CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSC------CST-
T ss_pred CCcCHHHHHHHHHhcCCeEEEEcCCC-CCCcc-----CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCC------CCC-
Confidence 77999999999864333588888998 99987 58999999999999999999973 344444321 001
Q ss_pred hhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC---CCCCcHHHHHHHHHHH
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG---LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~---~~~~s~~~Q~aa~~~L 873 (903)
+ ...+++.|+||+++ |+|.||++++++ +++.+..... ..++....+.++..++
T Consensus 237 --~------~~di~~~s~sK~l~--G~~gG~i~~~~~-~~~~l~~~~~~~~~~~~~~~~~~a~~~a~ 292 (447)
T 3h7f_A 237 --P------HADVVSTTVHKTLG--GGRSGLIVGKQQ-YAKAINSAVFPGQQGGPLMHVIAGKAVAL 292 (447)
T ss_dssp --T------TCSEEEEESSGGGC--CCSCEEEEECGG-GHHHHHHHHTTTTCSSCCHHHHHHHHHHH
T ss_pred --C------CCcEEEecCCcCCC--CCCeEEEEECHH-HHHHHhhhcCCcccCCccHHHHHHHHHHH
Confidence 1 13478999999874 899999999987 8888776422 3334444455555555
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=193.26 Aligned_cols=265 Identities=10% Similarity=0.065 Sum_probs=182.7
Q ss_pred CCC--CeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNS--GLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~--~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.|. ..||+..| .+.++ .++.+.+++.+.+.+... ..+..+...++++.+++.++...+ +|++|+|++++
T Consensus 71 dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~---~v~~~~sGseA 147 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLD---TVFFSDSGSVS 147 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEE---EEEEESSHHHH
T ss_pred CCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcC---EEEEeCcHHHH
Confidence 667 78999766 45555 688899999988876422 234567788999999998876554 89999999999
Q ss_pred HHHHHHHhcc-------CCC-eEEEcCCCcHHHHHHHHHcC--------------CEEEEecCCCCCCcccCHHHHHHHh
Q 043334 685 FNKLVLCCIL-------EGG-TLCFPAGSNGNYVSAARFLK--------------ANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 685 l~~ll~~l~~-------pGD-~Vlv~~P~y~~~~~~~~~~G--------------~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+..++..+.. +|+ .|++.+++|..+...+...+ ..+..++.........|+++|++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999988875 665 89999999866544443331 1233334322111124789999988
Q ss_pred hc--CCCcEEEEECC-CCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 743 ET--VKKPWVYISGP-TINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 743 ~~--~~~~~vil~~P-~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
++ .+ ..++++.| .|||+|.++ +.+.+++|.++|+++|+++|+||+|.++.+.+... . .......+
T Consensus 228 ~~~~~~-~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~---a----~~~~~~~p--- 296 (457)
T 3tfu_A 228 AQHAGE-LAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALF---A----ADHAGVSP--- 296 (457)
T ss_dssp HHHGGG-EEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS---T----HHHHTCCC---
T ss_pred HhCCCC-EEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchh---H----hHhcCCCc---
Confidence 73 22 24556666 259999877 78889999999999999999999998765555431 1 22222222
Q ss_pred CceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh------CC-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS------FP-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEH 890 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~------~~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~ 890 (903)
.++ ||||.++ .| +|+||++++++ +++.+.. .. .+++.+.+.|.++.++|+.-.. +.+.+.+.++
T Consensus 297 -dii---t~sK~l~-gG~~~lG~v~~~~~-i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~ 368 (457)
T 3tfu_A 297 -DIM---CVGKALT-GGYLSLAATLCTAD-VAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLG--QDWRTRITEL 368 (457)
T ss_dssp -SEE---EECGGGG-TTSSCCEEEEEEHH-HHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHT--SCHHHHHHHH
T ss_pred -eEE---EEChhhh-CCCcceEEEEEcHH-HHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhh--hHHHHHHHHH
Confidence 223 9999886 35 79999999987 9998862 11 3677889999999998852111 2344555555
Q ss_pred HHHHHHHHH
Q 043334 891 IRNLESRSK 899 (903)
Q Consensus 891 r~~y~~Rr~ 899 (903)
.+.++++.+
T Consensus 369 ~~~l~~~L~ 377 (457)
T 3tfu_A 369 AAGLTAGLD 377 (457)
T ss_dssp HHHHHHHHG
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-17 Score=182.50 Aligned_cols=191 Identities=10% Similarity=0.077 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHHc-cCCCCC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCC
Q 043334 630 PSLVKAAIFESFAR-QNMSES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGS 705 (903)
Q Consensus 630 p~~v~~al~~al~~-y~~~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~ 705 (903)
++.+.+++.+.+.. |....| ..++++++++++ |. + ++++|+|+++++..++.++ +++||+|+++.|+
T Consensus 11 ~~~v~~a~~~~~~~~~~~~~g~~~~~l~~~la~~~----~~--~---~v~~~~ggt~al~~~~~~l~~~~gd~Vl~~~~~ 81 (394)
T 1o69_A 11 GGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDYS----KS--E---NALALNSATAALHLALRVAGVKQDDIVLASSFT 81 (394)
T ss_dssp -CCHHHHHHHHHHHTTTSCTTHHHHHHHHHHHHHH----CC--S---EEEEESCHHHHHHHHHHHTTCCTTCEEEEESSS
T ss_pred CHHHHHHHHHHHHcCCccCCChHHHHHHHHHHHHh----CC--C---cEEEeCCHHHHHHHHHHHcCCCCCCEEEECCCc
Confidence 34577777777754 333346 555666666554 54 2 7999999999999999999 9999999999999
Q ss_pred cHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhc---CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcE
Q 043334 706 NGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILET---VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 706 y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~---~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~ 782 (903)
|+.+...++..|++++.++++ ++|.+|++.+++.+++ ++ ++|+++ ||||...+ +++|.++|+++|++
T Consensus 82 ~~~~~~~~~~~g~~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~-~~v~~~----~~~G~~~~---l~~i~~l~~~~~~~ 151 (394)
T 1o69_A 82 FIASVAPICYLKAKPVFIDCD--ETYNIDVDLLKLAIKECEKKP-KALILT----HLYGNAAK---MDEIVEICKENDIV 151 (394)
T ss_dssp CGGGTHHHHHTTCEEEEECBC--TTSSBCHHHHHHHHHHCSSCC-CEEEEE----CGGGCCCC---HHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHcCCEEEEEEeC--CCCCcCHHHHHHHHhcccCCc-eEEEEE----CCCCChhh---HHHHHHHHHHcCCE
Confidence 999999999999999999997 4678999999999886 45 588887 47897655 88899999999999
Q ss_pred EEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 783 VVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 783 VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
||+|++|+ ++.|.+... . .. ..+.+.||||..+++|.|+||++++++++++.+....
T Consensus 152 li~Dea~~~g~~~~~~~~---------~---~~-----~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~ 209 (394)
T 1o69_A 152 LIEDAAEALGSFYKNKAL---------G---TF-----GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYS 209 (394)
T ss_dssp EEEECTTCTTCEETTEET---------T---SS-----SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHT
T ss_pred EEEECcCcccceeCCccc---------c---cc-----cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHH
Confidence 99999998 565644321 0 11 1245566654445568899999997544888887653
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=194.53 Aligned_cols=207 Identities=10% Similarity=0.090 Sum_probs=160.1
Q ss_pred CCcHHHHHHHHHHHHccC--------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc-----
Q 043334 628 PIPSLVKAAIFESFARQN--------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL----- 694 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~--------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~----- 694 (903)
..++.+.+.+.+++..+. ...|..++++.+++++++.+|.+..++ ++++++|+++++..++.++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~-~~~~~~ggt~a~~~a~~a~~~~~~~~ 153 (497)
T 3mc6_A 75 HGGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLRMFNAPSDTG-CGTTTSGGTESLLLACLSAKMYALHH 153 (497)
T ss_dssp CCCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTC-CEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHHHhCCCCCCC-eEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence 345777777777766521 123456788899999999999985444 899999999999999998876
Q ss_pred CC---CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 695 EG---GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 695 pG---D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
+| |.|+++.|+|+.+...++..|++++.+|+++ +++.+|+++|++++++++ ++|++++|+ ||||.+.+ +++
T Consensus 154 ~g~~~~~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~-~~v~~~~p~-nptG~~~~---l~~ 227 (497)
T 3mc6_A 154 RGITEPEIIAPVTAHAGFDKAAYYFGMKLRHVELDP-TTYQVDLGKVKKFINKNT-VLLVGSAPN-FPHGIADD---IEG 227 (497)
T ss_dssp SCCSSCEEEEETTSCHHHHHHHHHSCCEEEEECBCT-TTCSBCTTTTGGGCCSSE-EEEEEETTC-TTTCCCCS---CTT
T ss_pred CCCCCceEEEeCCccHHHHHHHHHcCCeEEEEecCc-ccCcCCHHHHHHHHhhCC-EEEEEECCC-CCCCcCCC---HHH
Confidence 56 8999999999999999999999999999975 467899999999998766 599999998 99999988 778
Q ss_pred HHHHHHhCCcEEEEecCCCCCcc--CCC-CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEF--NYE-GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQL 848 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f--~~~-~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~l 848 (903)
|.++|+++|+++|+|++|+.+.. ... ..... ++ +. ... .+..+++.|++|.+ .+|.++||++++++ .
T Consensus 228 i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~--~~-~~-~~~----~g~d~~~~s~~K~l-~~~~~~g~~~~~~~-~ 297 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNL--PL-LD-FRV----PGVTSISCDTHKYG-FAPKGSSVIMYRNS-D 297 (497)
T ss_dssp TTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSC--CC-CS-TTS----TTCCEEEEETTTTT-CCCSSCEEEECSSH-H
T ss_pred HHHHHHHhCCEEEEECcchhhhhhhhhhhcccCC--cc-cc-ccC----CCCcEEEECchhhc-CCCCCceeEEecCH-H
Confidence 99999999999999999974322 111 00000 00 01 001 13568889999975 47889999999987 4
Q ss_pred HHH
Q 043334 849 VDA 851 (903)
Q Consensus 849 i~~ 851 (903)
+..
T Consensus 298 ~~~ 300 (497)
T 3mc6_A 298 LRM 300 (497)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=170.94 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=130.7
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCc-cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCG-NGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCG-tG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
.+.|++|+|+..+..++ +.... .++.+|||+||| +|.+++.+++.. +.+|+|+|+|+.+++.|++|+..+++
T Consensus 32 ~~~~~~~~p~~~~~~l~--~~~~~---~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~- 104 (230)
T 3evz_A 32 EYHPKGLVTTPISRYIF--LKTFL---RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNS- 104 (230)
T ss_dssp CCCTTSCCCCHHHHHHH--HHTTC---CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTC-
T ss_pred ecCCCeEeCCCchhhhH--hHhhc---CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCC-
Confidence 36789999986554332 22222 267899999999 999999999986 78999999999999999999988875
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
+++++++|+........++||+|++||||+..+...... +..+ +.
T Consensus 105 ----------------~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~----------------~~~~---~~ 149 (230)
T 3evz_A 105 ----------------NVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLT----------------EREA---IG 149 (230)
T ss_dssp ----------------CCEEEECSSCSSTTTCCSCEEEEEECCCCC----------------------------------
T ss_pred ----------------CcEEEeCCchhhhhcccCceeEEEECCCCcCCccccccC----------------hhhh---hc
Confidence 699999996443222234899999999999765422111 0111 22
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCC-CcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeee
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR-PGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIE 239 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~-~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e 239 (903)
.+..+.+.+..+++++.++|||||++++..+.. .....+.+.+++.||....+.. .....+..++.+.
T Consensus 150 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-----------~~g~~~~~~l~f~ 218 (230)
T 3evz_A 150 GGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDIKF-----------KVGTRWRHSLIFF 218 (230)
T ss_dssp CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEEE-----------CCCC-CEEEEEEE
T ss_pred cCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEEEe-----------cCCCeEEEEEEEe
Confidence 245566777899999999999999999977654 3445667889999997766521 1334455566666
Q ss_pred ccC
Q 043334 240 KNS 242 (903)
Q Consensus 240 ~~~ 242 (903)
+..
T Consensus 219 ~~~ 221 (230)
T 3evz_A 219 KGI 221 (230)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=191.37 Aligned_cols=264 Identities=8% Similarity=0.036 Sum_probs=183.8
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC--CC-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN--MS-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~--~~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
..|...+|+..| .+.++ .++.+.+++.+.+.+.. .. .+..+.+.++++++++.++...+ +|++++|+++++
T Consensus 51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~~~~sGseA~ 127 (476)
T 3i5t_A 51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLN---RIFFTTGGSTAV 127 (476)
T ss_dssp TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCC---EEEEESSHHHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcC---EEEEeCchHHHH
Confidence 467789999866 55555 58899999999887632 22 46778899999999998765544 899999999999
Q ss_pred HHHHHHhcc--------CCCeEEEcCCCcHHHHHHHHHcCCE-------------EEEec--CCCCCCcccC--------
Q 043334 686 NKLVLCCIL--------EGGTLCFPAGSNGNYVSAARFLKAN-------------IVNIP--TESEVGFKMT-------- 734 (903)
Q Consensus 686 ~~ll~~l~~--------pGD~Vlv~~P~y~~~~~~~~~~G~~-------------vv~v~--~~~~~~f~ld-------- 734 (903)
..++..+.. .++.|++.+|+|.++...+...+.. +..++ ....+ +..|
T Consensus 128 ~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~ 206 (476)
T 3i5t_A 128 DSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHA-GNRSQEAFLDDL 206 (476)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGC-TTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCccccc-CCCchHHHHHHH
Confidence 999988864 2579999999998877666544332 22222 21111 2223
Q ss_pred HHHHHHHhhc---CCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhh-
Q 043334 735 EKTLVTILET---VKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLS- 809 (903)
Q Consensus 735 ~~~L~~~l~~---~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~- 809 (903)
+++|++.++. .+. +++++.|.+|++|. +++.+++++|.++|++||+++|+||+|.++...|... . ..
T Consensus 207 ~~~le~~i~~~~~~~~-aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~---~----~~~ 278 (476)
T 3i5t_A 207 VQEFEDRIESLGPDTI-AAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWF---A----SEK 278 (476)
T ss_dssp HHHHHHHHHHHCGGGE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC---H----HHH
T ss_pred HHHHHHHHHhcCCCCE-EEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCce---e----eec
Confidence 7788888863 232 45555565588885 8899999999999999999999999998876555431 1 12
Q ss_pred hhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC--------C-CCCCCcHHHHHHHHHHHhccccc
Q 043334 810 KLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF--------P-GLSKPHSTVRYAIKKLLGLRERK 879 (903)
Q Consensus 810 ~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~--------~-~~~~~s~~~Q~aa~~~L~~~~~~ 879 (903)
...-.+ .+ -+|||.++ .| +|+|+++++++ +++.+... . .+++.++++|.++.++|+.-..
T Consensus 279 ~~~v~p----di---~t~sK~l~-~G~~plg~v~~~~~-i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~- 348 (476)
T 3i5t_A 279 VFGVVP----DI---ITFAKGVT-SGYVPLGGLAISEA-VLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMER- 348 (476)
T ss_dssp TTCCCC----SE---EEECGGGG-TTSSCCEEEEECHH-HHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHH-
T ss_pred ccCCCc----ch---hhhhhhhc-CCCcCeEEEEECHH-HHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHh-
Confidence 222222 22 26899998 48 99999999887 99988752 2 3678889999999999952111
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 043334 880 ARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr 898 (903)
+.+.+.+.+..+.++++.
T Consensus 349 -~~~~~~~~~~~~~l~~~L 366 (476)
T 3i5t_A 349 -EGIVDQAREMADYFAAAL 366 (476)
T ss_dssp -TTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 223344444444444433
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-17 Score=181.63 Aligned_cols=203 Identities=11% Similarity=-0.039 Sum_probs=153.1
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHHccCCC-CCchHHHHHHHHHH-HhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCC
Q 043334 620 MDVDQSFLPIPSLVKAAIFESFARQNMS-ESEIDVTPSIQQYI-KSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEG 696 (903)
Q Consensus 620 Ls~g~p~~~~p~~v~~al~~al~~y~~~-~G~~~lr~ala~~l-~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pG 696 (903)
...++|++++++.+.+++.+.+.+.... +| +..+.+++.+ ++++|. . + ++++++|+++++..++.++ ++||
T Consensus 5 i~~~~p~~~~~~~i~~a~~~~~~~~~~~~~~--~~~~~l~~~~~a~~~g~-~--~-~~v~~~sgt~al~~al~~l~~~~G 78 (377)
T 3ju7_A 5 IPFLRASTVPVIEYLDELKEIDASHIYTNYG--PINQRFEQTIMSGFFQN-R--G-AVTTVANATLGLMAAIQLKKRKKG 78 (377)
T ss_dssp BCSCCCCCCCGGGGHHHHHHHHHHTCCSSSC--HHHHHHHHHHHHHTSTT-C--S-EEEEESCHHHHHHHHHHHHSCTTC
T ss_pred eeccCCCCCCcHHHHHHHHHHHHcCCcccCC--HHHHHHHHHHHHHHhCC-C--C-eEEEeCCHHHHHHHHHHHcCCCCc
Confidence 5567999999999999999988764333 23 3345666666 777772 1 2 5788888888998888887 8999
Q ss_pred CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh-hcC--CCcEEEEECCCCCCcccCCCHHHHHHHH
Q 043334 697 GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL-ETV--KKPWVYISGPTINPTGLLYSNKEIENIL 773 (903)
Q Consensus 697 D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l-~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~ 773 (903)
|+|+++.|+|+.+...++..|++++.+++++ ++|.+|++++++++ +++ + ++|+ |+ ||||.+.+ +++|.
T Consensus 79 d~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~~~~t-k~v~---~~-~~~G~~~~---~~~i~ 149 (377)
T 3ju7_A 79 KYALMPSFTFPATPLAAIWCGLEPYFIDISI-DDWYMDKTVLWDKIEELKEEV-AIVV---PY-ATFGSWMN---LEEYE 149 (377)
T ss_dssp CEEEEESSSCTHHHHHHHHTTCEEEEECBCT-TTCSBCHHHHHHHHHHHGGGE-EEEC---CB-CGGGBCCC---CHHHH
T ss_pred CEEEECCCCcHHHHHHHHHcCCEEEEEecCC-ccCCcCHHHHHHHHhcCCCCc-eEEE---EE-CCCCCccC---HHHHH
Confidence 9999999999999999999999999999975 46889999999988 554 4 3444 77 99999987 67788
Q ss_pred HHHHhCCcEEEEecCCCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHH
Q 043334 774 TVCAKYGARVVIDTAFSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 774 ~ia~k~~i~VI~DeaY~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
++|+ +|++||+|++|+... +.+.. .. ... ..+.+.|| +|.++. | +.|+++++++++++
T Consensus 150 ~la~-~~~~vi~D~a~a~g~~~~~~~---------~g--~~~-----~d~~~~S~~~~K~l~~-g-~gG~~~~~~~~l~~ 210 (377)
T 3ju7_A 150 ELEK-KGVPVVVDAAPGFGLMNGGMH---------YG--QDF-----SGMIIYSFHATKPFGI-G-EGGLIYSKNEEDIQ 210 (377)
T ss_dssp HHHH-TTCCBEEECTTCTTCEETTEE---------TT--TTC-----SSEEEEECBTTSSSCC-B-SCEEEEESCHHHHH
T ss_pred HHHh-cCCEEEEECCCccCCeECCEe---------cc--CCC-----CcEEEEECCCCCcCCC-C-CcEEEEECCHHHHH
Confidence 8889 999999999996432 22211 10 001 13455554 698874 5 78999998877888
Q ss_pred HHHhCC
Q 043334 851 AFSSFP 856 (903)
Q Consensus 851 ~l~~~~ 856 (903)
.+..+.
T Consensus 211 ~~~~~~ 216 (377)
T 3ju7_A 211 RIKRMG 216 (377)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 777643
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=182.93 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=141.4
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+++.++.+.+.+. .-..|.+.....+..+.+++.+++.+|.+ ++++++|+++++..++.+++++||+|+++.|+
T Consensus 31 ~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~l~~~la~~~g~~-----~~~~~~~gt~a~~~al~~l~~~gd~vi~~~~~ 104 (412)
T 2cb1_A 31 GFKTLEEGQERFA-TGEGYVYARQKDPTAKALEERLKALEGAL-----EAVVLASGQAATFAALLALLRPGDEVVAAKGL 104 (412)
T ss_dssp CCSSHHHHHHHHH-HCCSCSBTTTCCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHTTCCTTCEEEEETTC
T ss_pred ecCChHHHHHHhc-cccCcCcCCCCChHHHHHHHHHHHHhCCC-----cEEEECCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3556666666553 11112222223355777888888887753 69999999999999999999999999999999
Q ss_pred cHHHHHHH----HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCc
Q 043334 706 NGNYVSAA----RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGA 781 (903)
Q Consensus 706 y~~~~~~~----~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i 781 (903)
|..+...+ +..|++++.++. |++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+
T Consensus 105 ~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~l~~~i~~~~-~~v~~~~~~-n~~G~~~~---l~~i~~l~~~~~~ 171 (412)
T 2cb1_A 105 FGQTIGLFGQVLSLMGVTVRYVDP--------EPEAVREALSAKT-RAVFVETVA-NPALLVPD---LEALATLAEEAGV 171 (412)
T ss_dssp CHHHHHHHHHTTTTTTCEEEEECS--------SHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHcCCEEEEECC--------CHHHHHHHhccCC-eEEEEeCCC-CCCccccc---HHHHHHHHHHcCC
Confidence 98766553 457999999975 3889999998766 589999998 99999997 8899999999999
Q ss_pred EEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCc
Q 043334 782 RVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNH 845 (903)
Q Consensus 782 ~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~ 845 (903)
++|+|++|+...+... + .. . +.++++.|+||.++.||+|+||+++.+
T Consensus 172 ~li~D~~~~~~~~~~~--------~-~~----~----~~di~~~S~~K~~~~~~~~~G~~~~~~ 218 (412)
T 2cb1_A 172 ALVVDNTFGAAGALCR--------P-LA----W----GAHVVVESLTKWASGHGSVLGGAVLSR 218 (412)
T ss_dssp EEEEECGGGTTTTSCC--------G-GG----G----TCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred EEEEECCCccccccCC--------c-cc----c----CCeEEEECCcccccCCCCcEEEEEEec
Confidence 9999999965422111 1 11 1 368999999999999999999988755
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=188.34 Aligned_cols=198 Identities=13% Similarity=0.030 Sum_probs=154.3
Q ss_pred CCcHHHHHHHHHHHHcc----CCCCCchHHHHHHHHHHHhhcCCCCCC--CCcEEecCchHHHHHHHHHHhcc-------
Q 043334 628 PIPSLVKAAIFESFARQ----NMSESEIDVTPSIQQYIKSNFGFPIDI--NAEFIYADCSQSLFNKLVLCCIL------- 694 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y----~~~~G~~~lr~ala~~l~~~~G~~~~p--e~~I~vt~Gs~~al~~ll~~l~~------- 694 (903)
++++.+.+++.+++... ....+..++.+++++++++.+|.+.+. +..+++|+|+++++..++.++++
T Consensus 53 ~~~~~v~e~~~~a~~~~~~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~ 132 (452)
T 2dgk_A 53 WDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRME 132 (452)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccCCCChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888887776542 223345677889999999999987652 12499999999999998888764
Q ss_pred -CC-----CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHH
Q 043334 695 -EG-----GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKE 768 (903)
Q Consensus 695 -pG-----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ee 768 (903)
+| +.|++++ +|..+...++..|++++.+|+++ ++|.+|+++|++++++++ ++|++++|+ ||||.+.+
T Consensus 133 ~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~~v~~v~~~~-~~~~~d~~~l~~~i~~~t-~~v~~~~~~-n~tG~~~~--- 205 (452)
T 2dgk_A 133 AAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENT-IGVVPTFGV-TYTGNYEF--- 205 (452)
T ss_dssp HTTCCCSCCEEEESS-CCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTE-EEEECBBSC-TTTCBBCC---
T ss_pred hcCCCCCCcEEEECC-CcHHHHHHHHHcCceEEEEecCC-CCCeECHHHHHHHHhhCC-EEEEEEcCC-cCCcccCC---
Confidence 56 5999999 99999999999999999999874 468899999999998776 589999998 99999977
Q ss_pred HHHHHHHHHhC------CcEEEEecCCCCCcc---CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 769 IENILTVCAKY------GARVVIDTAFSGLEF---NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 769 l~eI~~ia~k~------~i~VI~DeaY~~l~f---~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
+++|.++|+++ |+++++|++|+.+.. .+... +. +. .. +-.++..|++| |+++|+++|
T Consensus 206 l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~----~~----~~---~~d~~~~~~hK-~~~~~~~~G 271 (452)
T 2dgk_A 206 PQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV--WD----FR----LP---RVKSISASGHK-FGLAPLGCG 271 (452)
T ss_dssp HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC--CS----TT----ST---TEEEEEEETTT-TTCCCSSCE
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccch--hh----cC----CC---CCcEEEECccc-ccCCCCCeE
Confidence 77888888885 999999999976542 22210 00 11 11 24557788899 667999999
Q ss_pred EEEeCcH
Q 043334 840 FLVLNHP 846 (903)
Q Consensus 840 ~lv~~~~ 846 (903)
|+++.++
T Consensus 272 ~~~~~~~ 278 (452)
T 2dgk_A 272 WVIWRDE 278 (452)
T ss_dssp EEEESSG
T ss_pred EEEEcCH
Confidence 9999765
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=188.16 Aligned_cols=244 Identities=9% Similarity=0.070 Sum_probs=175.6
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccC----CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQN----MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~----~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
..|...||+..| .+.++ .++.+.+++.+.+.+.. ...+..+.+.++++.+++.++...+ +|++++|++++
T Consensus 52 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~---~v~~~~sGseA 128 (472)
T 3hmu_A 52 SEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLN---HVFFAGGGSEA 128 (472)
T ss_dssp TTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEE---EEEEESSHHHH
T ss_pred CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCC---EEEEeCCHHHH
Confidence 467788999866 55555 57899999999887643 2234567888999999998765444 89999999999
Q ss_pred HHHHHHHhcc--------CCCeEEEcCCCcHHHHHHHHHcCC------------EEEEecCCC--C-CCcccC-------
Q 043334 685 FNKLVLCCIL--------EGGTLCFPAGSNGNYVSAARFLKA------------NIVNIPTES--E-VGFKMT------- 734 (903)
Q Consensus 685 l~~ll~~l~~--------pGD~Vlv~~P~y~~~~~~~~~~G~------------~vv~v~~~~--~-~~f~ld------- 734 (903)
+..++..+.. +++.|++.+|+|..+...+...+. .+..++... . +.+ .|
T Consensus 129 ~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~ 207 (472)
T 3hmu_A 129 NDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLA 207 (472)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHH
Confidence 9999988875 467999999999887665554433 244454321 0 111 23
Q ss_pred -HHHHHHHhhcC--CCcEEEEECCCCCCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 735 -EKTLVTILETV--KKPWVYISGPTINPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 735 -~~~L~~~l~~~--~~~~vil~~P~~NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
++.|++.++.. ...+++++.|.+|++|.+. +.+.+++|.++|+++|+++|+||+|.++...|... . ...
T Consensus 208 ~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~---a----~~~ 280 (472)
T 3hmu_A 208 RARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWF---G----TQT 280 (472)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSC---H----HHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccc---h----hHH
Confidence 78888887631 1236677777757777655 88999999999999999999999998765555321 1 222
Q ss_pred hccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC--C--CCCCCcHHHHHHHHHHHh
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF--P--GLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~--~--~~~~~s~~~Q~aa~~~L~ 874 (903)
..-.+ .+ .+|||+++..|+|+||++++++ +++.+... . .+++.++++|.++.++|+
T Consensus 281 ~~v~p----di---~t~sK~l~gg~~plG~v~~~~~-i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~ 340 (472)
T 3hmu_A 281 MGIRP----HI---MTIAKGLSSGYAPIGGSIVCDE-VAHVIGKDEFNHGYTYSGHPVAAAVALENLR 340 (472)
T ss_dssp HTCCC----SE---EEECGGGTTTSSCCEEEEEEHH-HHHHHTTSCBCCCCTTTTCHHHHHHHHHHHH
T ss_pred hCCCC----ce---eeechhhhcCCcceEEEEECHH-HHHhcccCCccccCCCCCCHHHHHHHHHHHH
Confidence 22222 22 2689999865699999999887 99998321 1 267788999999999995
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=189.98 Aligned_cols=221 Identities=12% Similarity=0.090 Sum_probs=149.1
Q ss_pred CCCCeEEccCCCC------CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 613 PNSGLIHMDVDQS------FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 613 ~~~~~IdLs~g~p------~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+.++++++.|++ +.++ +.+.+++.+.+......++..+....+++.+++++|. + +|++|+|+++++.
T Consensus 32 ~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~--~---~v~~t~ggt~A~~ 105 (467)
T 1ax4_A 32 AGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNY--D---YIIPAHQGRGAEN 105 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHTCCCCSSSCHHHHHHHHHHHHHHCC--C---EEEEESSHHHHHH
T ss_pred cCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhhcccccccCccHHHHHHHHHHHcCC--C---cEEEcCCcHHHHH
Confidence 3444555555543 2222 4555666665543211222222233344444444554 2 7999999999999
Q ss_pred HHHHHhcc----CCCe---EEEcCCCcHHHHHHHHHcCCEEEEecCCCC--------CCcccCHHHHHHHhhc----CCC
Q 043334 687 KLVLCCIL----EGGT---LCFPAGSNGNYVSAARFLKANIVNIPTESE--------VGFKMTEKTLVTILET----VKK 747 (903)
Q Consensus 687 ~ll~~l~~----pGD~---Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~--------~~f~ld~~~L~~~l~~----~~~ 747 (903)
.++.++++ +||. |+++.+.|..+...+...|++++.+++... .++.+|+++|++++++ ++
T Consensus 106 ~al~~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~- 184 (467)
T 1ax4_A 106 ILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNI- 184 (467)
T ss_dssp HHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGE-
T ss_pred HHHHHHHHhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCe-
Confidence 99999998 9998 999988889989999999999998765321 1346899999999975 34
Q ss_pred cEEEEECCCCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCCC--C--------ccCCCCCCCCchhhhhhhhccCCC
Q 043334 748 PWVYISGPTINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFSG--L--------EFNYEGWGGWDLEGCLSKLYSSTN 816 (903)
Q Consensus 748 ~~vil~~P~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~--l--------~f~~~~~s~~s~~~~~~~l~~~~~ 816 (903)
++|++++|+ ||| |.+++.+++++|.++|++||++||+|+++.. . .+.+. ++......+...
T Consensus 185 ~~vi~~~~~-np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-- 256 (467)
T 1ax4_A 185 VAIVSTVTC-NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNA-----TIKEVIFDMYKY-- 256 (467)
T ss_dssp EEEEEESSB-TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTC-----CHHHHHHHHGGG--
T ss_pred eEEEEeccc-cCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCC-----chhhhhhhhccc--
Confidence 589999997 999 8999999999999999999999999998632 1 12221 111111000011
Q ss_pred CCCceEEEccCchhcccc-cceeeEEEeCcH-HHHHHHHh
Q 043334 817 SSFNVSLLGGLSLKMLTG-ALKFGFLVLNHP-QLVDAFSS 854 (903)
Q Consensus 817 ~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~-~li~~l~~ 854 (903)
..+++.|+||.+|++ | ||++++++ ++++.+..
T Consensus 257 ---~d~~~~s~sK~~g~~~G---g~~~~~d~~~l~~~~~~ 290 (467)
T 1ax4_A 257 ---ADALTMSAKKDPLLNIG---GLVAIRDNEEIFTLARQ 290 (467)
T ss_dssp ---CSEEEEETTSTTCCSSC---EEEEESSCHHHHHHHHH
T ss_pred ---cceEEEeccccCCCCcc---eEEEeCCHHHHHHHHHh
Confidence 124668999999876 4 67777733 38777654
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=185.89 Aligned_cols=172 Identities=9% Similarity=0.087 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEe--cCchHHHHHHHHHHhccCCCeEEEcC-CCcHHHHHH----------HHHcCCEE
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCILEGGTLCFPA-GSNGNYVSA----------ARFLKANI 720 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l~~pGD~Vlv~~-P~y~~~~~~----------~~~~G~~v 720 (903)
++++++.+++.+|.+. .+++ ++|+++++..++.++++|||+|++++ |.|..+... ++..|+++
T Consensus 61 ~~~Le~~lA~l~g~e~----alv~p~~~sGt~Ai~~al~all~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~ 136 (409)
T 3jzl_A 61 RDTLERVYATVFKTEA----ALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGY 136 (409)
T ss_dssp HHHHHHHHHHHHTCSE----EEEETTSCSHHHHHHHHHHHHCCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEE
T ss_pred HHHHHHHHHHHhCCCc----EEEECCCccHHHHHHHHHHHhcCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEE
Confidence 6778888888888643 2443 77778899999999999999999998 999998854 46679999
Q ss_pred EEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC----CCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCCCcc
Q 043334 721 VNIPTESEVGFKMTEKTLVTILETVKKPWVYISG----PTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSGLEF 794 (903)
Q Consensus 721 v~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~----P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~l~f 794 (903)
+.+++++ ++.+|++++++++++++ ++|++++ |+ ||||.+ .++++|+++|++ +|+++|+|++|+.+.+
T Consensus 137 ~~v~~~~--~g~~d~e~l~~ai~~~t-klV~i~~s~g~p~-nptg~v---~~l~~I~~la~~~~~~~~livD~a~~~~~~ 209 (409)
T 3jzl_A 137 SSVPLLE--NGDVDFPRIAKKMTPKT-KMIGIQRSRGYAD-RPSFTI---EKIKEMIVFVKNINPEVIVFVDNCYGEFVE 209 (409)
T ss_dssp EECCCCT--TSCCCHHHHHHHCCTTE-EEEEEECSCTTSS-SCCCCH---HHHHHHHHHHHHHCTTCEEEEECTTCTTTS
T ss_pred EEeCCCC--CCCcCHHHHHHhccCCC-eEEEEECCCCCCC-CCcCcc---ccHHHHHHHHHhhCCCCEEEEeCCcccccc
Confidence 9999864 46799999999998776 5999999 98 999877 569999999999 9999999999976554
Q ss_pred CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh
Q 043334 795 NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 795 ~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~ 854 (903)
...+ .. . +..++++|+||.+|.+| .+.||++++++ +++.+..
T Consensus 210 ~~~p---------~~----~----g~Div~~S~sK~lgg~~~~~GG~v~~~~~-li~~l~~ 252 (409)
T 3jzl_A 210 YQEP---------PE----V----GADIIAGSLIKNPGGGLAKTGGYIAGKEA-LVDLCGY 252 (409)
T ss_dssp SCCS---------GG----G----TCSEEEEETTSGGGTTTCSSCEEEEECHH-HHHHHHH
T ss_pred cCCc---------cc----c----CCeEEEECccccCCccCCceEEEEEeCHH-HHHHHHH
Confidence 3322 11 1 25789999999998666 34689999876 9998876
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=188.42 Aligned_cols=249 Identities=12% Similarity=-0.013 Sum_probs=159.0
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHc-cC----------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFAR-QN----------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~-y~----------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.+.+..+++. .++.+.+++.+.+.+ +. .......+.+.+++++++.+|.+.+ +|++++| +++
T Consensus 31 ~~~~~~~~~n~--~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~v~~~sG-s~a 104 (420)
T 3gbx_A 31 EHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYA---NVQPHSG-SQA 104 (420)
T ss_dssp HSEECCTTCCC--CCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEE---ECCCSSH-HHH
T ss_pred cceeeeccCCC--CCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCc---eeEecCc-HHH
Confidence 35666655554 588899998887632 21 0111234455556788888888544 6878888 678
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHH---HHHH--HcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYV---SAAR--FLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~---~~~~--~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
+..++.+++++||+|+++.|+|+.+. .... ..+...++++.+ +++.+|++++++++++.+.++|++++|+ ||
T Consensus 105 ~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~d~~~l~~~i~~~~~~~v~~~~~~-~~ 181 (420)
T 3gbx_A 105 NFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGID--ESGKIDYDEMAKLAKEHKPKMIIGGFSA-YS 181 (420)
T ss_dssp HHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEEC--TTCSCCHHHHHHHHHHHCCSEEEECCTT-CC
T ss_pred HHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCC--ccCCcCHHHHHHHHHhcCCeEEEEecCc-cC
Confidence 88888999999999999999998743 2222 234566666665 4577999999999987433689898998 98
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
+ ..+ +++|.++|+++|++||+||+|... .+.+... . .+. ...++++|+||+++ |.|.
T Consensus 182 ~--~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~------~---~~~------~~di~~~s~sK~~~--g~~g 239 (420)
T 3gbx_A 182 G--VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP------N---PVP------HAHVVTTTTHKTLA--GPRG 239 (420)
T ss_dssp S--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC------C---STT------TSSEEEEESSGGGC--SCSC
T ss_pred C--ccC---HHHHHHHHHHcCCEEEEECCcchhceecccCC------c---ccc------cCCEEEeecccCCC--CCCc
Confidence 5 555 889999999999999999998532 2222211 0 011 24589999999985 6667
Q ss_pred eEEEeCc--HHHHHHHHhCCC---CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 839 GFLVLNH--PQLVDAFSSFPG---LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 839 G~lv~~~--~~li~~l~~~~~---~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
||+++++ ..+.+.+..... ..+++...+.++..++. .. .+++++++++.++++++.+
T Consensus 240 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~--~~----~~~~~~~~~~~~~~~~~~l 301 (420)
T 3gbx_A 240 GLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALK--EA----MEPEFKVYQQQVAKNAKAM 301 (420)
T ss_dssp EEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHH--HT----TSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHH--HH----HhHhHHHHHHHHHHHHHHH
Confidence 9999998 237777765322 23444555555444442 11 0133445555555555544
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=183.34 Aligned_cols=176 Identities=13% Similarity=0.068 Sum_probs=138.5
Q ss_pred cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCE
Q 043334 644 QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKAN 719 (903)
Q Consensus 644 y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~ 719 (903)
|.+.....+.++.+++.+++..|.+ +.++++|+++++..++.+++++||+|+++.|.|.+....+ +..|++
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~~-----~~i~~ssGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~~ 148 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGGA-----GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVT 148 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTCE
T ss_pred ccccCCCCchHHHHHHHHHHHhCCC-----eEEEeCCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCcE
Confidence 3333334566778888888888863 3555567789999999999999999999999999877655 457999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCCCccCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSGLEFNYE 797 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~l~f~~~ 797 (903)
++.++.+ |++++++++++++ ++|++++|+ ||||.+++ +++|.++|++ +|+++|+|++|+...+ ..
T Consensus 149 v~~v~~~-------d~~~le~ai~~~t-klV~~e~~~-NptG~v~d---l~~I~~la~~~~~g~~livD~a~a~~~~-~~ 215 (415)
T 2fq6_A 149 TSWFDPL-------IGADIVKHLQPNT-KIVFLESPG-SITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVL-FK 215 (415)
T ss_dssp EEEECTT-------CGGGGGGGCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTS-SC
T ss_pred EEEECCC-------CHHHHHHhhccCC-cEEEEECCC-CCCCEeec---HHHHHHHHHhhcCCCEEEEECCCccccc-CC
Confidence 9999763 6788999998776 599999998 99999998 7899999999 9999999999964321 11
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce-eeEEEeCcHHHHHHHHhC
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK-FGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR-iG~lv~~~~~li~~l~~~ 855 (903)
+ +. . +..+++.|+||.++.+|.+ .||++++++ +++.+...
T Consensus 216 --------p-~~----~----g~Div~~S~sK~lg~~g~~~~G~l~~~~~-~~~~l~~~ 256 (415)
T 2fq6_A 216 --------A-LD----F----GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLREN 256 (415)
T ss_dssp --------G-GG----G----TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHH
T ss_pred --------c-cc----c----CCeEEEEeCccccCCCCCceEEEEEeCHH-HHHHHHHH
Confidence 1 11 1 2578999999999988876 589999876 77777654
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-17 Score=183.75 Aligned_cols=262 Identities=11% Similarity=0.066 Sum_probs=170.7
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
..|...+|+..|. +.++ .++.+.+++.+.+.+.....+..+...++++.+++.++ . ++ +|++|+|+++++..+
T Consensus 50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~~la~~l~~~~~-~--~~-~v~~~~sGsea~~~a 125 (429)
T 4e77_A 50 VDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFGAPTEMEVKMAQLVTDLVP-T--MD-MVRMVNSGTEATMSA 125 (429)
T ss_dssp TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHST-T--CS-EEEEESSHHHHHHHH
T ss_pred CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHhhCC-C--CC-EEEEeCcHHHHHHHH
Confidence 4677899998665 3344 58899999999887643222345677888888988776 2 34 899999999999998
Q ss_pred HHHhc--cCCCeEEEcCCCcHHHHHHHH-HcC--CEEEEecCCCCCCc------------ccCHHHHHHHhhcC-CCcEE
Q 043334 689 VLCCI--LEGGTLCFPAGSNGNYVSAAR-FLK--ANIVNIPTESEVGF------------KMTEKTLVTILETV-KKPWV 750 (903)
Q Consensus 689 l~~l~--~pGD~Vlv~~P~y~~~~~~~~-~~G--~~vv~v~~~~~~~f------------~ld~~~L~~~l~~~-~~~~v 750 (903)
+.... .+++.|++.+++|..+...+. ..| ......+.. .++ ..|+++|+++++.. ....+
T Consensus 126 l~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~ 203 (429)
T 4e77_A 126 IRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNS--PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVAC 203 (429)
T ss_dssp HHHHHHHHCCCEEEEETTCCCC------------------CCC--TTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEE
T ss_pred HHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCc--CCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEE
Confidence 87543 356789999998876554221 111 111111111 011 02789999998752 22478
Q ss_pred EEECCCCCCcccCCC--HHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc
Q 043334 751 YISGPTINPTGLLYS--NKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS 828 (903)
Q Consensus 751 il~~P~~NPTG~v~s--~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S 828 (903)
++++|+ ||+|.++. .+.+++|.++|++||+++|+||+|.++ ..+... ........+ . +.|||
T Consensus 204 vi~ep~-~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~~~-------~~~~~~~~p----d---i~t~s 267 (429)
T 4e77_A 204 IIVEPV-AGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVALAG-------AQDYYHVIP----D---LTCLG 267 (429)
T ss_dssp EEECSS-BCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBTTC-------HHHHTTCCC----S---EEEEE
T ss_pred EEECCc-cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCcch-------HHHhcCCCC----C---eeeec
Confidence 888998 66654443 455999999999999999999999876 433321 122222221 1 34999
Q ss_pred hhcccccceeeEEEeCcHHHHHHHHhC----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 829 LKMLTGALKFGFLVLNHPQLVDAFSSF----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 829 K~~g~~GlRiG~lv~~~~~li~~l~~~----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|.++ +|+|+||++++++ +++.+... . .+++.+.+.+.++.++|+.-+. +.+.+.+.++++.++++.+
T Consensus 268 K~~~-~G~~~G~~~~~~~-~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~ 339 (429)
T 4e77_A 268 KIIG-GGMPVGAFGGRRE-VMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLR 339 (429)
T ss_dssp GGGG-TTSCCEEEEECHH-HHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHH
T ss_pred cccc-CCCCeEEEEECHH-HHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence 9998 7999999999887 88887752 2 2667889999999998852211 2344455555555555443
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=184.68 Aligned_cols=209 Identities=15% Similarity=0.022 Sum_probs=151.9
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccC---------CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQN---------MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~---------~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+++.+.|+.+... +.|+.+.+++.+.+..+. ...+..++.+.+++++++.+|.+.+ +|++|+|++++
T Consensus 65 ~~~~iyld~~~~g-~~p~~v~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~---~v~~t~g~t~a 140 (465)
T 3e9k_A 65 DENAIYFLGNSLG-LQPKMVKTYLEEELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEK---EIALMNALTVN 140 (465)
T ss_dssp TCBCEECBTTTSC-CEETTHHHHHHHHHHHHHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGG---GEEECSCHHHH
T ss_pred CCCeEEecCCccC-CChHHHHHHHHHHHHHHHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcC---CEEEECCHHHH
Confidence 4578888876544 334555555555443211 1124456667788888888888643 89999999999
Q ss_pred HHHHHHHhccCCCe---EEEcCCCcHHHH----HHHHHcCCEEE-----EecCCCCCCcccCHHHHHHHhh---cCCCcE
Q 043334 685 FNKLVLCCILEGGT---LCFPAGSNGNYV----SAARFLKANIV-----NIPTESEVGFKMTEKTLVTILE---TVKKPW 749 (903)
Q Consensus 685 l~~ll~~l~~pGD~---Vlv~~P~y~~~~----~~~~~~G~~vv-----~v~~~~~~~f~ld~~~L~~~l~---~~~~~~ 749 (903)
+..++.++++|||. |+++.|+|++.. ..++..|++++ .++.+ +++.+|+++++++++ +++ ++
T Consensus 141 l~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~--~~~~~d~~~l~~~i~~~~~~~-~l 217 (465)
T 3e9k_A 141 LHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPRE--GEETLRIEDILEVIEKEGDSI-AV 217 (465)
T ss_dssp HHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCT--TCSSCCHHHHHHHHHHHGGGE-EE
T ss_pred HHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCC--CCCccCHHHHHHHHHhcCCCe-EE
Confidence 99999999887765 999999999844 46677898852 23432 457799999999996 344 58
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
|++++|+ ||||.+++ +++|.++|+++|++||+|++++... .+ .. +. .. +..++++|++|
T Consensus 218 v~~~~~~-n~tG~~~~---l~~i~~la~~~g~~vi~D~a~~~g~---~~---~~----~~---~~----~~D~~~~s~~K 276 (465)
T 3e9k_A 218 ILFSGVH-FYTGQHFN---IPAITKAGQAKGCYVGFDLAHAVGN---VE---LY----LH---DW----GVDFACWCSYK 276 (465)
T ss_dssp EEEESBC-TTTCBBCC---HHHHHHHHHHTTCEEEEECTTTTTT---SC---CC----HH---HH----TCCEEEECSSS
T ss_pred EEEeCcc-cCcceeec---HHHHHHHHHHcCCEEEEEhhhhcCC---cC---Cc----hh---hc----CCCEEEECccc
Confidence 9999998 99999998 7888899999999999999985311 11 11 11 11 25689999999
Q ss_pred hcc-cccceeeEEEeCcHHHHHHH
Q 043334 830 KML-TGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 830 ~~g-~~GlRiG~lv~~~~~li~~l 852 (903)
.++ .|| ++|+++++++ +++.+
T Consensus 277 ~l~~gp~-~~g~l~~~~~-~~~~~ 298 (465)
T 3e9k_A 277 YLNAGAG-GIAGAFIHEK-HAHTI 298 (465)
T ss_dssp TTCCCTT-CCCEEEECGG-GTTTS
T ss_pred ccccCCC-ceEEEEEcHH-HHhhc
Confidence 994 344 7999999876 65544
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=183.80 Aligned_cols=197 Identities=10% Similarity=0.000 Sum_probs=135.8
Q ss_pred CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCC--eEEEcCCCcHHHHH---HHHHcCCEEEE
Q 043334 648 ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGG--TLCFPAGSNGNYVS---AARFLKANIVN 722 (903)
Q Consensus 648 ~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD--~Vlv~~P~y~~~~~---~~~~~G~~vv~ 722 (903)
+|..+....+++.+++++|.+. .+++++| ++++..++.+++.+|| .|+++.++|..+.. .....|++++.
T Consensus 43 y~~~~~~~~l~~~la~~~~~~~----~i~~~~G-~~a~~~al~~~~~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~ 117 (357)
T 3lws_A 43 YGTGAIIEPFEQKFADVLGMDD----AVFFPSG-TMAQQVALRIWSDETDNRTVAYHPLCHLEIHEQDGLKELHPIETIL 117 (357)
T ss_dssp TTEETTHHHHHHHHHHHHTCSE----EEEESCH-HHHHHHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEE
T ss_pred ccCChHHHHHHHHHHHHhCCCc----EEEecCc-HHHHHHHHHHHhhcCCCcEEEecccceeeeeccchhhhccCcEEEE
Confidence 3433445566666677777632 4666555 5677788888999998 77777777665433 45677999999
Q ss_pred ecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCCC--CccCCCCC
Q 043334 723 IPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFSG--LEFNYEGW 799 (903)
Q Consensus 723 v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~--l~f~~~~~ 799 (903)
++.+ ++.+|+++++++. ++ +++++++|+ ||| |.+++.+++++|+++|+++|++||+|++|.. ..+.+..
T Consensus 118 v~~~---~~~~d~~~l~~~~--~~-~~v~~~~p~-np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~- 189 (357)
T 3lws_A 118 VGAA---DRLMTLDEIKALP--DI-ACLLLELPQ-REIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKT- 189 (357)
T ss_dssp CSCT---TSCCCHHHHHTCC--SC-SEEEEESSB-GGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCC-
T ss_pred ecCC---CCCcCHHHHhcCc--Cc-ceEEEEccc-ccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCC-
Confidence 9852 3569999999873 34 599999998 998 9999999999999999999999999999841 1122221
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L 873 (903)
. . .+... ..+++.|+||+++.++. ||++++++ +++.+.+... ......+.+.++...|
T Consensus 190 ----~---~-~~~~~-----~d~~~~s~sK~~~~~~g--g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 251 (357)
T 3lws_A 190 ----A---A-EIAGL-----FDSIYISFYKGLGGIAG--AILAGPAA-FCQTARIWKRRYGGDLISLYPYIVSADYYY 251 (357)
T ss_dssp ----H---H-HHHTT-----SSEEEEESSSTTCCSSC--EEEEECHH-HHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred ----h---H-HHHhc-----CCEEEEeccccCCCCce--EEEEcCHH-HHHHHHHHHHHhcCCcccchHHHHHHHHHH
Confidence 1 1 11111 12347899999943332 99999887 8888875432 2223344555555556
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=180.31 Aligned_cols=165 Identities=21% Similarity=0.260 Sum_probs=121.9
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.|.|++|+|+..+..+.+.+..... ..++.+|||+|||+|.+++.+++. ++.+|+|+|+|+.+++.|++|+..++++
T Consensus 96 ~v~~~~lipr~~te~lv~~~l~~~~-~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~- 172 (284)
T 1nv8_A 96 LVEEGVFVPRPETEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVS- 172 (284)
T ss_dssp ECCTTSCCCCTTHHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCT-
T ss_pred EeCCCceecChhHHHHHHHHHHHhc-ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-
Confidence 4789999999766655554332110 014579999999999999999998 8899999999999999999999988872
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCce---eEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQL---ERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~f---D~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
++++++++|+.+... ++| |+|++||||+.... .+..++. +.+ ..++.+
T Consensus 173 --------------~~v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~--~l~~~v~-~ep---------~~al~~ 223 (284)
T 1nv8_A 173 --------------DRFFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSA--HLPKDVL-FEP---------PEALFG 223 (284)
T ss_dssp --------------TSEEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGG--SCTTSCC-CSC---------HHHHBC
T ss_pred --------------CceEEEECcchhhcc---cccCCCCEEEEcCCCCCccc--ccChhhc-cCc---------HHHhcC
Confidence 469999999988643 278 99999999997554 2333333 222 223333
Q ss_pred cccccccHHHHHHHHHHHh-hcccCCcEEEEEeCCCCcHHHHHHHHHHC
Q 043334 159 FVEDQFGLGLIARAVEEGI-GVIKPSGIMIFNMGGRPGQGVCKRLFERR 206 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~-~~LkpgG~ll~~~~~~~~~~~l~~ll~~~ 206 (903)
+.+|+ .+++++. +.|+|||.++++++..+.... .+++++.
T Consensus 224 ---~~dgl----~~~~~i~~~~l~pgG~l~~e~~~~q~~~v-~~~~~~~ 264 (284)
T 1nv8_A 224 ---GEDGL----DFYREFFGRYDTSGKIVLMEIGEDQVEEL-KKIVSDT 264 (284)
T ss_dssp ---TTTSC----HHHHHHHHHCCCTTCEEEEECCTTCHHHH-TTTSTTC
T ss_pred ---CCcHH----HHHHHHHHhcCCCCCEEEEEECchHHHHH-HHHHHhC
Confidence 45555 4677777 889999999999988765554 4455443
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=187.93 Aligned_cols=249 Identities=10% Similarity=0.018 Sum_probs=163.6
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHH-ccCC-------CCCc---hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFA-RQNM-------SESE---IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~-~y~~-------~~G~---~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
..+++++.+ +++ |+.+.+++.+.+. .+.. ..|. .++.+.+++++++++|.+.. .|++++| ++
T Consensus 24 ~~~~~~~~~-~~~--~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~---~i~~~sG-t~ 96 (405)
T 2vi8_A 24 AKIELIASE-NFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA---NVQPHSG-AQ 96 (405)
T ss_dssp HSEECCTTC-CCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSH-HH
T ss_pred cceeeccCc-ccC--CHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce---EEEecCc-HH
Confidence 346666544 333 8889999888774 3311 1132 23455566788888887633 5667788 99
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHH-H--HHHcC--CEEEEecCCCCCCcccCHHHHHHHhhc-CCCcEEEEECCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVS-A--ARFLK--ANIVNIPTESEVGFKMTEKTLVTILET-VKKPWVYISGPTI 757 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~-~--~~~~G--~~vv~v~~~~~~~f~ld~~~L~~~l~~-~~~~~vil~~P~~ 757 (903)
++..++.+++++||.|+++.|+|+.+.. . +...| .+++.+++++ +++.+|++++++.+++ ++ +++++ +|+
T Consensus 97 a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~l~~~i~~~~~-~~v~~-~~~- 172 (405)
T 2vi8_A 97 ANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRP-KLIVA-AAA- 172 (405)
T ss_dssp HHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCC-SEEEE-CCS-
T ss_pred HHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEeccccc-ccCCcCHHHHHHHHHhcCC-eEEEE-eCC-
Confidence 9999999999999999999999987743 1 12333 4888888753 3577999999999986 55 46655 665
Q ss_pred CCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc-cccc
Q 043334 758 NPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML-TGAL 836 (903)
Q Consensus 758 NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~Gl 836 (903)
|+ |...+ +++|.++|+++|++||+||+|+...+..... . ..+. ...++++|+||.++ ++|
T Consensus 173 ~~-~~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~------~--~~~~------~~di~~~s~sK~~~g~~g- 233 (405)
T 2vi8_A 173 AY-PRIID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLH------P--NPVP------YAHFVTTTTHKTLRGPRG- 233 (405)
T ss_dssp SC-CSCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS------C--CSTT------TCSEEEEESSSTTCCCSC-
T ss_pred CC-CccCC---HHHHHHHHHHcCCEEEEEccccccccccCcC------C--Cccc------cCCEEEEeccccCCCCCC-
Confidence 54 44444 8899999999999999999997322211111 0 0011 13489999999997 666
Q ss_pred eeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHH-HHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 837 KFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAI-KKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa-~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
||++++++ +++.+..... ..+.+.+.|.++ ..++.... ..+++++++.++++++.+.
T Consensus 234 --G~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~------~~~~~~~~~~~~~~~~~l~ 293 (405)
T 2vi8_A 234 --GMILCQEQ-FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL------QDDFKAYAKRVVDNAKRLA 293 (405)
T ss_dssp --EEEEECHH-HHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHH------SHHHHHHHHHHHHHHHHHH
T ss_pred --eEEEEcHH-HHHHHHhhhcccccCCCCHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHH
Confidence 99999866 8888876532 333323444444 45663101 1355566666666666553
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=175.94 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=145.9
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh---ccCCCeEEEcCC
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC---ILEGGTLCFPAG 704 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l---~~pGD~Vlv~~P 704 (903)
++++.+++++.+.+.......+ +..+.+++.+++++|.+ ++++|+|+++++..++.++ +++||+|+++.|
T Consensus 10 ~~~~~v~~a~~~~~~~~~~~~~--~~~~~l~~~la~~~~~~-----~v~~~~ggt~al~~~~~~~~~~~~~gd~Vl~~~~ 82 (375)
T 2fnu_A 10 CLDKEDKKAVLEVLNSKQLTQG--KRSLLFEEALCEFLGVK-----HALVFNSATSALLTLYRNFSEFSADRNEIITTPI 82 (375)
T ss_dssp CCCHHHHHHHHHHHTSSCCSSS--HHHHHHHHHHHHHHTCS-----EEEEESCHHHHHHHHHHHSSCCCTTSCEEEECSS
T ss_pred CCCHHHHHHHHHHHHcCcccCC--hHHHHHHHHHHHHhCCC-----eEEEeCCHHHHHHHHHHHhcccCCCCCEEEECCC
Confidence 4678899999988865322222 23445555566666653 6999999999999999999 899999999999
Q ss_pred CcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 705 SNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 705 ~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
+|+.+...++..|++++.++++++ + .+|++++++.+++++ ++|+++ ||||.+.+ +++|.++|+++|++||
T Consensus 83 ~~~~~~~~~~~~g~~~~~~~~~~~-~-~~d~~~l~~~i~~~~-~~v~~~----~~tG~~~~---l~~i~~l~~~~~~~li 152 (375)
T 2fnu_A 83 SFVATANMLLESGYTPVFAGIKND-G-NIDELALEKLINERT-KAIVSV----DYAGKSVE---VESVQKLCKKHSLSFL 152 (375)
T ss_dssp SCTHHHHHHHHTTCEEEECCBCTT-S-SBCGGGSGGGCCTTE-EEEEEE----CGGGCCCC---HHHHHHHHHHHTCEEE
T ss_pred ccHhHHHHHHHCCCEEEEeccCCC-C-CCCHHHHHhhcCcCc-eEEEEe----CCcCCccC---HHHHHHHHHHcCCEEE
Confidence 999999999999999999999753 3 689999999887655 466665 45899988 7889999999999999
Q ss_pred EecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEe-CcHHHHHHHHhC
Q 043334 785 IDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVL-NHPQLVDAFSSF 855 (903)
Q Consensus 785 ~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~-~~~~li~~l~~~ 855 (903)
+|++|+...+... ..+... ..+.+.||| |.++. | +|++++ +++++++.+...
T Consensus 153 ~D~a~~~~~~~~~-----------~~~~~~-----~~i~~~s~s~~K~~~~-g--~g~~~~~~~~~~~~~~~~~ 207 (375)
T 2fnu_A 153 SDSSHALGSEYQN-----------KKVGGF-----ALASVFSFHAIKPITT-A--EGGAVVTNDSELHEKMKLF 207 (375)
T ss_dssp EECTTCTTCEETT-----------EETTSS-----SSEEEEECCTTSSSCC-S--SCEEEEESCHHHHHHHHHH
T ss_pred EECccccCCeECC-----------eecccc-----CCeEEEeCCCCCCccc-c--CceEEEeCCHHHHHHHHHH
Confidence 9999965332110 011111 247889999 99975 7 798888 545587777654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=167.66 Aligned_cols=204 Identities=16% Similarity=0.172 Sum_probs=135.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..+ .+|+|+|+++.+++.|++|+..+++ .++++++++|+.+..
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~---------------~~~v~~~~~D~~~~~ 112 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQL---------------EDQIEIIEYDLKKIT 112 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTC---------------TTTEEEECSCGGGGG
T ss_pred CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCC---------------cccEEEEECcHHHhh
Confidence 578999999999999999998854 4999999999999999999999887 357999999999886
Q ss_pred cC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. ..++||+|++||||+.............. +. ........+..+++.+.++|||||++++
T Consensus 113 ~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~--------------~~----a~~~~~~~~~~~l~~~~~~LkpgG~l~~ 174 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATPDTSLKNTNEHF--------------RI----ARHEVMCTLEDTIRVAASLLKQGGKANF 174 (259)
T ss_dssp GTSCTTCEEEEEECCCC-----------------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhccCCccEEEECCCCCCCccccCCCCchHH--------------Hh----hhccccCCHHHHHHHHHHHccCCcEEEE
Confidence 42 13489999999999865221111100000 00 0112233456899999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecccCCCcccHHHHHHhhh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGLSGDLPICARTAWAYGK 268 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~~~~~p~~~~~~~~~~~ 268 (903)
..+.....+. ...+++.||....+...+-. . .......+++..++. +
T Consensus 175 ~~~~~~~~~~-~~~l~~~~~~~~~~~~v~~~-~------~~~~~~~l~~~~k~~-------------------------~ 221 (259)
T 3lpm_A 175 VHRPERLLDI-IDIMRKYRLEPKRIQFVHPR-S------DREANTVLVEGIKDG-------------------------K 221 (259)
T ss_dssp EECTTTHHHH-HHHHHHTTEEEEEEEEEESS-T------TSCCSEEEEEEEETC-------------------------C
T ss_pred EEcHHHHHHH-HHHHHHCCCceEEEEEeecC-C------CCCcEEEEEEEEeCC-------------------------C
Confidence 8776655444 57888999988776432200 0 112233344444432 2
Q ss_pred cCcceeeeeeeeeccccCchhHHHHHHHHhcc
Q 043334 269 AGGRISHALSVYSCQLHQPNQVKKIFKFLKNG 300 (903)
Q Consensus 269 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~g 300 (903)
.+..+.-.+.+|+...+++.+++++.+.-..|
T Consensus 222 ~~~~~~~~l~i~~~~g~yt~~~~~~~~~~~~~ 253 (259)
T 3lpm_A 222 PGVKYVPPVIVYDELGEYTPVIKEILYGESEG 253 (259)
T ss_dssp SCCEEEEEEECBCTTSSBCHHHHHHHHC----
T ss_pred CCCeecCCEEEECCCCCcCHHHHHHHhhhhcc
Confidence 33456677888888777888888886644333
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=180.43 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=129.3
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH----HHHHcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS----AARFLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv 721 (903)
+.+...+.++++++.+++.+|.+. .+++++| ++++..++.++++|||+|++++|+|+.+.. .++..|++++
T Consensus 76 y~r~~~p~~~~le~~lA~l~g~~~----~v~~~sG-~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~ 150 (430)
T 3ri6_A 76 YSRSSNPTVEDLEQRLKNLTGALG----VLALGSG-MAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVR 150 (430)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSE----EEEESCH-HHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHCCCc----EEEECCH-HHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEE
Confidence 333344667888888888888642 4666666 589998999999999999999999998887 6678999999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
.++.+ |++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|+...+. .
T Consensus 151 ~v~~~-------d~~~l~~ai~~~t-~~v~~e~p~-NptG~~~d---l~~i~~la~~~g~~livD~a~~~~~~~--~--- 213 (430)
T 3ri6_A 151 FVDVM-------DSLAVEHACDETT-KLLFLETIS-NPQLQVAD---LEALSKVVHAKGIPLVVDTTMTPPYLL--E--- 213 (430)
T ss_dssp EECTT-------CHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHTTTCCEEEECTTSCTTTC--C---
T ss_pred EeCCC-------CHHHHHHhhCCCC-eEEEEECCC-CCCCeecC---HHHHHHHHHHcCCEEEEECCCcccccC--C---
Confidence 99874 7899999998766 599999998 99999998 778999999999999999999633221 0
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
+ . .. +..+++.|+||.++.+|..+|.+++
T Consensus 214 ----~-~----~~----g~div~~S~sK~l~g~g~~~gG~vv 242 (430)
T 3ri6_A 214 ----A-K----RL----GVDIEVLSSTKFISGGGTSVGGVLI 242 (430)
T ss_dssp ----G-G----GG----TCSEEEEECCCEEETTEEECCEEEE
T ss_pred ----h-H----Hc----CCEEEEECCcccccCCCCceEEEEE
Confidence 0 1 11 3578999999999888877776665
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=178.79 Aligned_cols=191 Identities=15% Similarity=0.105 Sum_probs=144.0
Q ss_pred CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH-----HHcCCEEE
Q 043334 647 SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA-----RFLKANIV 721 (903)
Q Consensus 647 ~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~-----~~~G~~vv 721 (903)
.....+.++++++.+++..|.+ . .+++++| ++++.. +..++++||+|++++|+|......+ +..|++++
T Consensus 62 ~r~~~p~~~~l~~~la~l~g~~-~---~~~~~sG-~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~~~~ 135 (400)
T 3nmy_A 62 SRTHNPTRFAYERCVAALEGGT-R---AFAFASG-MAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGLDFS 135 (400)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCS-E---EEEESSH-HHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCCEEE
T ss_pred ccCCCHHHHHHHHHHHHHhCCC-C---EEEecCH-HHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCeEEE
Confidence 3334556778888888888754 2 4555555 888887 5678999999999999999655553 34699999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
.++.+ |++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+||+|....+.. +
T Consensus 136 ~v~~~-------d~~~l~~~i~~~~-~~v~~e~~~-np~G~~~~---l~~i~~la~~~g~~livDe~~~~~~~~~-~--- 199 (400)
T 3nmy_A 136 FVDLT-------DPAAFKAAIRADT-KMVWIETPT-NPMLKLVD---IAAIAVIARKHGLLTVVDNTFASPMLQR-P--- 199 (400)
T ss_dssp EECTT-------SHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTHHHHCC-G---
T ss_pred EECCC-------CHHHHHHHhccCC-CEEEEECCC-CCCCeeec---HHHHHHHHHHcCCEEEEECCCcccccCC-h---
Confidence 99873 6899999998766 599999998 99999997 8899999999999999999995322211 1
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE--EEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF--LVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~--lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
.. . +..+++.|+||.++.+|.++|+ +++.++++++.+..... ....+....+++...+
T Consensus 200 ------~~----~----g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l 261 (400)
T 3nmy_A 200 ------LS----L----GADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGL 261 (400)
T ss_dssp ------GG----G----TCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHH
T ss_pred ------hh----c----CCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhH
Confidence 11 1 3579999999999989988876 56556558888776543 4455666666665555
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-16 Score=177.01 Aligned_cols=192 Identities=12% Similarity=0.050 Sum_probs=142.6
Q ss_pred CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcH
Q 043334 629 IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNG 707 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~ 707 (903)
.++.+.+++.+.+..... +..+..+.+++.+++++|.+ ++++++|+++++..++.++ +++||+|+++.|+|.
T Consensus 15 ~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~la~~~~~~-----~~i~~~sgt~al~~~l~~l~~~~gd~Vi~~~~~~~ 87 (373)
T 3frk_A 15 IEYEIKFKFEEIYKRNWF--ILGDEDKKFEQEFADYCNVN-----YCIGCGNGLDALHLILKGYDIGFGDEVIVPSNTFI 87 (373)
T ss_dssp HHHHHHHHHHHHHHHTCC--SSSHHHHHHHHHHHHHHTSS-----EEEEESCHHHHHHHHHHHTTCCTTCEEEEETTSCT
T ss_pred CCHHHHHHHHHHHHCCCc--cCCchHHHHHHHHHHHhCCC-----eEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcH
Confidence 356677777777655322 22233344444445555542 5888888899999999999 999999999999999
Q ss_pred HHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEec
Q 043334 708 NYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDT 787 (903)
Q Consensus 708 ~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~De 787 (903)
.+...++..|++++.+++++ ++|.+|++++++.+++++ ++|+ |+ ||||.+.+ +++|.++|+++|++||+|+
T Consensus 88 ~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~l~~~~-~~v~---~~-n~~G~~~~---l~~i~~l~~~~~~~li~D~ 158 (373)
T 3frk_A 88 ATALAVSYTGAKPIFVEPDI-RTYNIDPSLIESAITEKT-KAII---AV-HLYGQPAD---MDEIKRIAKKYNLKLIEDA 158 (373)
T ss_dssp HHHHHHHHHSCEEEEECEET-TTTEECGGGTGGGCCTTE-EEEE---EE-CCTTCCCC---HHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeccc-cccCcCHHHHHHhcCCCC-eEEE---EE-CCCcCccc---HHHHHHHHHHcCCEEEEEC
Confidence 99999999999999999875 457899999999987755 3444 76 99999887 7788999999999999999
Q ss_pred CCCCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCc--hhcccccceeeEEEeCcHHHHHHHHh
Q 043334 788 AFSGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLS--LKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 788 aY~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~S--K~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+|+.. .+++... ... ..+++.||| |.++.+| +.|+++++++++++.+..
T Consensus 159 a~~~g~~~~~~~~------------~~~-----~d~~~~S~~~~K~l~~~g-~gg~~~~~~~~~~~~~~~ 210 (373)
T 3frk_A 159 AQAHGSLYKGMKV------------GSL-----GDAAGFSFYPAKNLGSLG-DGGAVVTNDKDLAEKIKA 210 (373)
T ss_dssp TTCTTCEETTEET------------TSS-----SSEEEEECCTTSSSCCSS-SCEEEEESCHHHHHHHHH
T ss_pred CcccCCEECCEec------------ccc-----ccEEEEeCcCCCccCccc-eeEEEEeCCHHHHHHHHH
Confidence 99742 2333221 111 247888888 8876335 489999987657776664
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=180.14 Aligned_cols=172 Identities=12% Similarity=0.069 Sum_probs=138.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEe--cCchHHHHHHHHHHhccCCCeEEEcC-CCcHHHHHH-----------HHHcCCE
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCILEGGTLCFPA-GSNGNYVSA-----------ARFLKAN 719 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l~~pGD~Vlv~~-P~y~~~~~~-----------~~~~G~~ 719 (903)
++++++.+++.+|.+. .++. ++|+++++..++.++++|||+|++++ |.|+.+... ++..|++
T Consensus 75 ~~~Le~~lA~l~g~e~----alv~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 150 (427)
T 3i16_A 75 RDSLDAVYARVFNTES----ALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGIN 150 (427)
T ss_dssp HHHHHHHHHHHHTCSE----EEEETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCE
T ss_pred HHHHHHHHHHHhCCcc----eEEeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCE
Confidence 6778888888888753 2442 56667889999999999999999999 999987743 4567999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEEC----CCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISG----PTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSG 791 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~----P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~ 791 (903)
++.+++++ ++.+|+++++++++ +++ ++|++++ |+ ||||.+ .++++|+++|++ +|+++|+|++|+.
T Consensus 151 ~~~v~~~~--~g~~D~e~l~~~l~~~~~t-klV~i~~s~~~p~-nptg~i---~dl~~i~~la~~~~~g~~livD~a~~~ 223 (427)
T 3i16_A 151 YKQVDLKE--DGKPNLEEIEKVLKEDESI-TLVHIQRSTGYGW-RRALLI---EDIKSIVDCVKNIRKDIICFVDNCYGE 223 (427)
T ss_dssp EEECCCCT--TSSCCHHHHHHHHHTCTTE-EEEEEECSCCSSS-SCCCCH---HHHHHHHHHHHHHCTTSEEEEECTTTT
T ss_pred EEEecCcc--CCCcCHHHHHHHhhCCCCC-EEEEEEcCCCCCC-CCcccH---HHHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 99999864 35689999999998 555 5999999 88 999876 679999999999 9999999999976
Q ss_pred CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHh
Q 043334 792 LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 792 l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~ 854 (903)
+.+...+ .. . +..++++|+||.+|.+| .+.||++++++ +++.+..
T Consensus 224 ~~~~~~p---------~~----~----gaDiv~~S~sK~lgg~g~~~gG~i~~~~~-li~~l~~ 269 (427)
T 3i16_A 224 FMDTKEP---------TD----V----GADLIAGSLIKNIGGGIAPTGGYLAGTKD-CIEKTSY 269 (427)
T ss_dssp TSSSSCG---------GG----G----TCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHH
T ss_pred ccccCCc---------cc----c----CCeEEEecCcccCCCCCCceEEEEEECHH-HHHHHHH
Confidence 5543322 11 1 25689999999998666 67799999877 9999887
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=179.58 Aligned_cols=172 Identities=12% Similarity=0.033 Sum_probs=136.8
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEe--cCchHHHHHHHHHHhccCCCeEEEcC-CCcHHHHH-----------HHHHcCCE
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIY--ADCSQSLFNKLVLCCILEGGTLCFPA-GSNGNYVS-----------AARFLKAN 719 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~ll~~l~~pGD~Vlv~~-P~y~~~~~-----------~~~~~G~~ 719 (903)
++.+++.+++.+|.+.. ++. ++|+++++..++.++++|||+|++++ |.|..+.. .++..|++
T Consensus 76 ~~~Le~~lA~l~g~e~a----lv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~ 151 (427)
T 3hvy_A 76 RDSLDRVYANIFNTESA----FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVK 151 (427)
T ss_dssp HHHHHHHHHHHHTCSEE----EEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCE
T ss_pred HHHHHHHHHHHhCCCce----EEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCE
Confidence 67788888888886532 442 56667888989999999999999999 99988763 34567999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhh--cCCCcEEEEEC----CCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILE--TVKKPWVYISG----PTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSG 791 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~--~~~~~~vil~~----P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~ 791 (903)
++.+++ + ++.+|+++++++++ +++ ++|++++ |+ ||||.+ .++++|+++|++ +|+++|+|++|+.
T Consensus 152 ~~~v~~-~--~~~~d~e~l~~~i~~~~~t-klV~i~~s~gyp~-nptg~v---~dl~~i~~ia~~~~~g~~livD~a~~~ 223 (427)
T 3hvy_A 152 YKMVDL-K--DGKVDINTVKEELKKDDSI-KLIHIQRSTGYGW-RKSLRI---AEIAEIIKSIREVNENVIVFVDNCYGE 223 (427)
T ss_dssp EEECCC-B--TTBCCHHHHHHHHHHCTTE-EEEEEESSCCSSS-SCCCCH---HHHHHHHHHHHHHCSSSEEEEECTTCT
T ss_pred EEEecC-C--CCCcCHHHHHHHhhCCCCC-EEEEEECCCCCCC-CccccH---HHHHHHHHHHHHhCCCCEEEEECCccc
Confidence 999998 2 46799999999998 555 5999999 88 999866 679999999999 8999999999976
Q ss_pred CccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhC
Q 043334 792 LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 792 l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~ 855 (903)
+.+...+ .. . +..++++|+||++|.+| .+.||++++++ +++.+...
T Consensus 224 ~~~~~~p---------~~----~----gaDiv~~S~sK~lgg~g~~~GG~i~~~~~-li~~l~~~ 270 (427)
T 3hvy_A 224 FVEEKEP---------TD----V----GADIIAGSLIKNIGGGIATTGGYIAGKEE-YVTQATFR 270 (427)
T ss_dssp TTSSSCG---------GG----G----TCSEEEEETTSGGGTTTCCSCEEEEECHH-HHHHHHHH
T ss_pred cccCCCC---------cc----c----CCeEEEECCcccccccccceEEEEEECHH-HHHHHHHH
Confidence 5543322 11 1 25689999999998655 46689999876 99998873
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=184.23 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=176.1
Q ss_pred CCCCCeEEccCCC--CCCC-CcHHHH-H-HHHH---HHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 612 TPNSGLIHMDVDQ--SFLP-IPSLVK-A-AIFE---SFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 612 ~~~~~~IdLs~g~--p~~~-~p~~v~-~-al~~---al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
..|...+|+..|. ++++ .++.+. + ++.+ .+..... ..+..+.+.++++.+++.++. ..++ +|++|+|+
T Consensus 51 ~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~-~~~~-~v~~~~~g 128 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGD-PALP-HLFFVEGG 128 (449)
T ss_dssp TTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCC-TTCC-EEEEESSH
T ss_pred CCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCC-CCCC-EEEEeCch
Confidence 3456688886554 4454 478899 8 8888 6655321 234556778888889888872 2334 89999999
Q ss_pred HHHHHHHHHHhc---c----------C-CCeEEEcCCCcHHHHHHHHH---------cC-----CEEEEecCCCCCCc--
Q 043334 682 QSLFNKLVLCCI---L----------E-GGTLCFPAGSNGNYVSAARF---------LK-----ANIVNIPTESEVGF-- 731 (903)
Q Consensus 682 ~~al~~ll~~l~---~----------p-GD~Vlv~~P~y~~~~~~~~~---------~G-----~~vv~v~~~~~~~f-- 731 (903)
++++..++..+. . + ||.|++.+|+|.++...+.. .| .+++.+|.++....
T Consensus 129 seA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 208 (449)
T 2cjg_A 129 ALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEP 208 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhcc
Confidence 999999887543 2 2 89999999999765442211 12 25566665430011
Q ss_pred ------ccCHHHHHHHhhcC-CCcEEEEECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCc
Q 043334 732 ------KMTEKTLVTILETV-KKPWVYISGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWD 803 (903)
Q Consensus 732 ------~ld~~~L~~~l~~~-~~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s 803 (903)
..++++|++.++.. .+..+++++|.||||| .+++.+++++|.++|++||+++|+||+|.++.+.+..+ .
T Consensus 209 ~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~---~ 285 (449)
T 2cjg_A 209 AMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW---A 285 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS---T
T ss_pred ccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcce---e
Confidence 24566788888631 1235666777669999 59999999999999999999999999998876665431 1
Q ss_pred hhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH-----h-CC-CCCCCcHHHHHHHHHHHhcc
Q 043334 804 LEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS-----S-FP-GLSKPHSTVRYAIKKLLGLR 876 (903)
Q Consensus 804 ~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~-----~-~~-~~~~~s~~~Q~aa~~~L~~~ 876 (903)
....+-.+ . +.||||.+ |+||++++++ +++.+. . .. .+.+.+.+.|.++.++|+.-
T Consensus 286 ----~~~~~~~~----d---i~t~sK~l-----~iG~~~~~~~-~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~ 348 (449)
T 2cjg_A 286 ----YQQLDVAP----D---IVAFGKKT-----QVCGVMAGRR-VDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVI 348 (449)
T ss_dssp ----HHHHTCCC----S---EEEECGGG-----SSEEEEECGG-GGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHH
T ss_pred ----ecccCCCc----e---EEEecCcc-----cEEEEEECHH-HhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHH
Confidence 11122121 2 23799987 7999999886 777522 1 12 26677899999999998421
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 043334 877 ERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 877 ~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
.. +.+.+++.++++.++++.+.
T Consensus 349 ~~--~~~~~~~~~~~~~l~~~L~~ 370 (449)
T 2cjg_A 349 EA--EGLFERAVQHGKYLRARLDE 370 (449)
T ss_dssp HH--HTHHHHHHHHHHHHHHHHHH
T ss_pred Hh--ccHHHHHHHHHHHHHHHHHH
Confidence 11 23445566666666665543
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=180.39 Aligned_cols=240 Identities=11% Similarity=0.083 Sum_probs=157.3
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHH---HHcc-CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEe-cCchHHHHHHHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFES---FARQ-NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIY-ADCSQSLFNKLV 689 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~a---l~~y-~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~v-t~Gs~~al~~ll 689 (903)
+..++++.| +.++|+.+++++.+. ...+ .......++.+++++++++.+|++ .++ +|++ |+|+++++..++
T Consensus 39 ~~~~~~~~~--~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~-~i~~~t~g~t~al~~~~ 114 (398)
T 2fyf_A 39 PRDGRFGSG--PSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLP-DGY-EVILGNGGATAFWDAAA 114 (398)
T ss_dssp CSSCBCCSS--SCCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCC-TTC-EEEEEETCHHHHHHHHH
T ss_pred cCCccccCC--CCCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHhCCC-CCc-eEEEeCCchhHHHHHHH
Confidence 346666654 335778888887662 1110 111112345788999999999987 333 7998 999999999999
Q ss_pred HHhccCCCeEEEcCCCcHH-HHHHHHHc--CCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCH
Q 043334 690 LCCILEGGTLCFPAGSNGN-YVSAARFL--KANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 690 ~~l~~pGD~Vlv~~P~y~~-~~~~~~~~--G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ 766 (903)
.+++++| .+.+..+.|.. ....+... |++++.++++ +++..+. .+++++ ++|++++|+ ||||.+++.
T Consensus 115 ~~l~~~g-v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~--~g~~~~~-----~i~~~~-~~v~~~~~~-nptG~~~~~ 184 (398)
T 2fyf_A 115 FGLIDKR-SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD--PGSAPEP-----QTDPSV-DVIAWAHNE-TSTGVAVAV 184 (398)
T ss_dssp HHTCSSC-EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC--TTCCCCC-----CCCTTC-SEEEEESEE-TTTTEECCC
T ss_pred HHhcCCC-eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC--CCCCCCc-----cccCCC-CEEEEeCcC-CCcceecch
Confidence 9999987 22333444432 12245555 8899999886 3444443 144555 599999998 999999997
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+++.++ +|++||+|++|+.... +. + +.+ ..+++.|+||.+|++| ++||++++++
T Consensus 185 ~~i~~~------~~~~vivD~a~~~~~~---~~---~-------~~~------~di~~~s~sK~~~~~g-g~g~l~~~~~ 238 (398)
T 2fyf_A 185 RRPEGS------DDALVVIDATSGAGGL---PV---D-------IAE------TDAYYFAPQKNFASDG-GLWLAIMSPA 238 (398)
T ss_dssp CCCTTC------C-CEEEEECTTTTTTS---CC---C-------GGG------CSEEEECTTSTTCSCS-SEEEEEECHH
T ss_pred HHhhhh------cCCeEEEEeccccCCc---cc---C-------ccc------CcEEEEecCcccCCCC-ceEEEEECHH
Confidence 666654 8999999999964321 10 0 111 3578999999999886 5999999887
Q ss_pred HHHHHHHhC-----------------------CCCCCCcHHHHHHHHHHHhcccccchhHHHH--HHHHHHHHHHHHHHH
Q 043334 847 QLVDAFSSF-----------------------PGLSKPHSTVRYAIKKLLGLRERKARDLMNA--VAEHIRNLESRSKRL 901 (903)
Q Consensus 847 ~li~~l~~~-----------------------~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~--l~~~r~~y~~Rr~~l 901 (903)
+++.+.+. .....++...+.++..+|+. +.+. ++++++.++++++.+
T Consensus 239 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~-------~~~~g~~~~~~~~~~~~~~~l 310 (398)
T 2fyf_A 239 -ALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDW-------LVGNGGLDWAVKRTADSSQRL 310 (398)
T ss_dssp -HHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHH-------HHHHTSHHHHHHHHHHHHHHH
T ss_pred -HHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHH-------HHHccCHHHHHHHHHHHHHHH
Confidence 87776421 12345667777777777731 1122 455566666666554
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 311 ~ 311 (398)
T 2fyf_A 311 Y 311 (398)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.1e-16 Score=164.15 Aligned_cols=193 Identities=11% Similarity=0.082 Sum_probs=129.1
Q ss_pred cccCCcccCc----chhHHHHHHhhcC-CCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh
Q 043334 2 MVIPSIFIPE----DWSFTFYEGLNRH-PDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL 76 (903)
Q Consensus 2 ~~~p~vfiP~----~w~~~~~~~L~~~-~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~ 76 (903)
.+.|++|+|+ .....++..+... +....++.+|||+|||+|.+++.++...++.+|+|+|+|+.|++.|++|+..
T Consensus 32 ~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~ 111 (254)
T 2h00_A 32 DIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ 111 (254)
T ss_dssp CCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH
T ss_pred ecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 5789999996 4444455444332 2111256799999999999999999987788999999999999999999988
Q ss_pred cccccCCCCcchhhhcccCCcEEEEEcccccc----ccCC-CCceeEEEECCCCCCCC-Cccch-hhHHhhhhhhhhhhh
Q 043334 77 NALDEKGQPIYDAEKKTLLDRVEFHESDLLAY----CRDH-DIQLERIVGCIPQILNP-NPDAM-SKIITENASEEFLYS 149 (903)
Q Consensus 77 ~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~----~~~~-~~~fD~Iv~NpPy~~~~-~~~~l-~~~~~~~~~~~~~~~ 149 (903)
++++ ++++++++|+.+. .... .++||+|++||||+... ....+ ...+..+.+...+
T Consensus 112 ~~~~---------------~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l-- 174 (254)
T 2h00_A 112 NNLS---------------DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVN-- 174 (254)
T ss_dssp TTCT---------------TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------
T ss_pred cCCC---------------ccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHH--
Confidence 8772 4699999997652 2111 13799999999998654 11111 0111111110000
Q ss_pred ccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 150 LSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 150 l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
...........+++.++..+++...+.++++|.+.+..+.......+.+++++.||..++..
T Consensus 175 ---~~~~~~~LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 175 ---TGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp -----CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred ---hhhHHHHEecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 00111111223566778888888889999999999888877776667889999999877663
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=176.40 Aligned_cols=203 Identities=13% Similarity=0.109 Sum_probs=145.8
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchH-HHHHHHHHHhcc--CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ-SLFNKLVLCCIL--EGGTLCFPAGSNGNYVSAARFLKANIVNIPTE 726 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~-~al~~ll~~l~~--pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~ 726 (903)
..++.+++++++++.+|.+.+ +++|+|++ .++..++.++.. +|+.|++++++|+.+...++..|++++.+++.
T Consensus 131 ~~~~~~~~~~~la~~~g~~~~----~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 131 MYALTNKILESFFKQLGLNVH----AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCCE----EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHcCCCCC----EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCCCceEEEEe
Confidence 445678899999999997632 99999999 455444444433 67889999999999999999999999999874
Q ss_pred C-CCCcccCHHHHHHHh-hc---CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCC
Q 043334 727 S-EVGFKMTEKTLVTIL-ET---VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGG 801 (903)
Q Consensus 727 ~-~~~f~ld~~~L~~~l-~~---~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~ 801 (903)
+ +++|.+|+++|++++ ++ .+..+|++++|| ||||.+.+ +++|.++|+++|+++++|++|+...++..
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~n-n~tG~i~~---l~~I~~la~~~g~~v~vD~A~~~~~~g~~---- 278 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTF-FPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYL---- 278 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSC-CTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHH----
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCC-CCCCCcCC---HHHHHHHHHHcCCcEEEECcchHHHHHhh----
Confidence 2 246889999999999 52 222467789998 99999977 88889999999999999999975443110
Q ss_pred CchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 802 WDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 802 ~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+.....+... ..+++.|++|.++ +++++||++++++++++.+..... ....+...+.++...+
T Consensus 279 ---~~~~~~~~~~-----~D~~~~s~hK~~~-~p~g~G~l~~~~~~~~~~l~~~~~g~~~~~~~~~~~aal~~l 343 (456)
T 2z67_A 279 ---EKLKKAFKYR-----VDAVVSSSDKNLL-TPIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSM 343 (456)
T ss_dssp ---HHHHHHHTSC-----CSEEEEEHHHHHC-CCSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred ---HHHHHhhCCC-----CCEEEEcCCCCcC-CCCCeEEEEEcCHHHHhhcCcCCCCCCCCCHHHHHHHHHHHH
Confidence 0111112111 2467899999764 679999999965548887754322 1122345566666555
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=174.23 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=143.4
Q ss_pred CCCCeEEccCCCC------CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 613 PNSGLIHMDVDQS------FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 613 ~~~~~IdLs~g~p------~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
.+.+.++++.|.+ +.++ +.+.+++.+.+......++..+....+++.+++++|. + ++++|+|+++++.
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~~~~~y~~~~~~~~l~~~la~~~~~--~---~v~~t~~gt~A~~ 103 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGY--Q---YTIPTHQGRGAEQ 103 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTSCCCCSSSCHHHHHHHHHHHHHHCC--S---EEEEEC--CCSHH
T ss_pred cCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhccCcceeccCchhHHHHHHHHHHhCc--C---cEEEcCCcHHHHH
Confidence 3444555555543 2333 5667777776543222233223333444555555554 2 7999999999999
Q ss_pred HHHHHhccC-----C----CeEEEcCCCcHHHHHHHHHcCCEEEEecCC----CC----CCcccCHHHHHHHhhc----C
Q 043334 687 KLVLCCILE-----G----GTLCFPAGSNGNYVSAARFLKANIVNIPTE----SE----VGFKMTEKTLVTILET----V 745 (903)
Q Consensus 687 ~ll~~l~~p-----G----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~----~~----~~f~ld~~~L~~~l~~----~ 745 (903)
.++.+++++ | |.|++..+.|..+.......|+.++..... .. .++.+|+++|++++++ +
T Consensus 104 ~al~~~~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~ 183 (467)
T 2oqx_A 104 IYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNN 183 (467)
T ss_dssp HHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccccccCCCCccceEEecccccccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCc
Confidence 999999988 9 998888666677777777888887764221 11 2456899999999974 4
Q ss_pred CCcEEEEECCCCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCCC----------CccCCCCCCCCchhhhhhhhccC
Q 043334 746 KKPWVYISGPTINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFSG----------LEFNYEGWGGWDLEGCLSKLYSS 814 (903)
Q Consensus 746 ~~~~vil~~P~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~----------l~f~~~~~s~~s~~~~~~~l~~~ 814 (903)
+ ++|++++|+ ||| |.+++.+++++|.++|++||++||+|+++.. ..+.+.. ...+....-..
T Consensus 184 ~-~~vi~~~~~-n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~-----~~~~~~~~~~~ 256 (467)
T 2oqx_A 184 V-PYIVATITS-NSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWT-----IEQITRETYKY 256 (467)
T ss_dssp C-CCEEEESSB-CGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSC-----HHHHHHHHGGG
T ss_pred e-eEEEEeccc-cCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCcc-----HHHHhhhhhcc
Confidence 5 589999997 998 9999999999999999999999999965532 1233321 11111000011
Q ss_pred CCCCCceEEEccCchhcccc-cceeeEEEeCcH---HHHHHHH
Q 043334 815 TNSSFNVSLLGGLSLKMLTG-ALKFGFLVLNHP---QLVDAFS 853 (903)
Q Consensus 815 ~~~~~~vI~l~S~SK~~g~~-GlRiG~lv~~~~---~li~~l~ 853 (903)
. + +++.|+||.+|+| | ||++++++ +.++.+.
T Consensus 257 ~---d--~~~~s~sK~~g~~~G---g~~~~~~~~~~~~~~~~~ 291 (467)
T 2oqx_A 257 A---D--MLAMSAKKDAMVPMG---GLLCMKDDSFFDVYTECR 291 (467)
T ss_dssp C---S--EEEEESSSTTCCSSC---EEEEECSGGGHHHHHHHH
T ss_pred C---C--eEEEecccccCCCCc---eEEEecChhHHHHHHHHH
Confidence 1 2 4578999999877 5 78888754 3444444
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=174.48 Aligned_cols=202 Identities=12% Similarity=0.118 Sum_probs=150.0
Q ss_pred CcHHHHHHHHHHHHccCCC----CCchHHHHHHHHHHHhhcCCCCC------CCCcEEecCchHHHHHHHHHHhccC---
Q 043334 629 IPSLVKAAIFESFARQNMS----ESEIDVTPSIQQYIKSNFGFPID------INAEFIYADCSQSLFNKLVLCCILE--- 695 (903)
Q Consensus 629 ~p~~v~~al~~al~~y~~~----~G~~~lr~ala~~l~~~~G~~~~------pe~~I~vt~Gs~~al~~ll~~l~~p--- 695 (903)
++..+.+.+...+..+... .+..++.+++++++++.+|.+.+ +..++++|+|+++++..++.+..++
T Consensus 86 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~ 165 (486)
T 1js3_A 86 YPAMLADMLCGAIGCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVR 165 (486)
T ss_dssp HHHHHHHHHHHHHCCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhh
Confidence 3445666676666443222 22457788999999999998752 1126899999999988877665431
Q ss_pred ------CC--------e--EEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCC-----cEEEEEC
Q 043334 696 ------GG--------T--LCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKK-----PWVYISG 754 (903)
Q Consensus 696 ------GD--------~--Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~-----~~vil~~ 754 (903)
|| . |+++.++|..+...++..|++++.+|++ +++.+|+++|+++++++++ .+|++++
T Consensus 166 ~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~~v~~v~~d--~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~ 243 (486)
T 1js3_A 166 RLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSD--GKFAMRASALQEALERDKAAGLIPFFVVATL 243 (486)
T ss_dssp HHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred hhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCCceEEeecC--CCCCCCHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 43 3 8889999999999999999999999986 4688999999999976542 2899999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|+ ||||.+-+ +++|.++|+++|+++++|++|+...+..+.. ...+..+.. ...+..|++|.+++|
T Consensus 244 ~~-n~tG~~~~---l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~-----~~~~~g~~~------adsi~~~~hK~~~~p 308 (486)
T 1js3_A 244 GT-TSCCSFDN---LLEVGPICHEEDIWLHVDAAYAGSAFICPEF-----RHLLNGVEF------ADSFNFNPHKWLLVN 308 (486)
T ss_dssp SC-TTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSTTT-----GGGGTTGGG------CSEEEECHHHHSSCC
T ss_pred CC-CCCCCCCC---HHHHHHHHHHcCCEEEEehhhHHHHHHCHHH-----HHHhcCccc------cCeeEEchhhhcCCC
Confidence 98 99998855 9999999999999999999998655433221 011122222 234557899999866
Q ss_pred cceeeEEEeCcHHH
Q 043334 835 ALKFGFLVLNHPQL 848 (903)
Q Consensus 835 GlRiG~lv~~~~~l 848 (903)
+++||++++++.+
T Consensus 309 -~~~G~l~~~~~~~ 321 (486)
T 1js3_A 309 -FDCSAMWVKRRTD 321 (486)
T ss_dssp -SSCEEEEESCHHH
T ss_pred -cceEEEEEeCHHH
Confidence 8999999987643
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=163.64 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=126.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh---cccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL---NALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~---~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++.+|||+|||+|.+++.++++.++.+|+|+|+++.+++.|++|+.. +++ .++++++++|+.
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l---------------~~~v~~~~~D~~ 100 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF---------------SARIEVLEADVT 100 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT---------------GGGEEEEECCTT
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC---------------cceEEEEeCCHH
Confidence 56799999999999999999998888999999999999999999987 766 247999999998
Q ss_pred cccc------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcc
Q 043334 107 AYCR------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180 (903)
Q Consensus 107 ~~~~------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~L 180 (903)
+... ...++||+|++||||..... ........ ..+.. .+...+..+++.+.++|
T Consensus 101 ~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~--~~~~~~~~------------~~a~~------~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 101 LRAKARVEAGLPDEHFHHVIMNPPYNDAGD--RRTPDALK------------AEAHA------MTEGLFEDWIRTASAIM 160 (260)
T ss_dssp CCHHHHHHTTCCTTCEEEEEECCCC-----------------------------------------CCHHHHHHHHHHHE
T ss_pred HHhhhhhhhccCCCCcCEEEECCCCcCCCC--CCCcCHHH------------HHHhh------cCcCCHHHHHHHHHHHc
Confidence 8732 11248999999999996531 11111100 00000 01111458899999999
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecccCCCcccH
Q 043334 181 KPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGLSGDLPICA 260 (903)
Q Consensus 181 kpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~~~~~p~~~ 260 (903)
||||.+++.++.....+. .+.+++. |...++...+-. . .......+++..++....
T Consensus 161 kpgG~l~~~~~~~~~~~~-~~~l~~~-~~~~~i~~v~~~-~------~~~~~~~lv~~~k~~~~~--------------- 216 (260)
T 2ozv_A 161 VSGGQLSLISRPQSVAEI-IAACGSR-FGGLEITLIHPR-P------GEDAVRMLVTAIKGSRAR--------------- 216 (260)
T ss_dssp EEEEEEEEEECGGGHHHH-HHHHTTT-EEEEEEEEEESS-T------TSCCCEEEEEEEETCCCC---------------
T ss_pred CCCCEEEEEEcHHHHHHH-HHHHHhc-CCceEEEEEcCC-C------CCCceEEEEEEEeCCCCC---------------
Confidence 999999998877654444 4566654 776665432200 0 111223345555543222
Q ss_pred HHHHHhhhcCcceeeeeeeeecccc-CchhHHHHHH
Q 043334 261 RTAWAYGKAGGRISHALSVYSCQLH-QPNQVKKIFK 295 (903)
Q Consensus 261 ~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~ 295 (903)
..+.-.+.+++...+ ++.+++++.+
T Consensus 217 ----------~~~~~~l~i~~~~~~~yt~~~~~~~~ 242 (260)
T 2ozv_A 217 ----------LTFRAPLIMHETGSHAFTPFVDDLNN 242 (260)
T ss_dssp ----------CEECCCEESSCTTCCSCCHHHHHHHT
T ss_pred ----------ceecCCEEEECCCCCCCCHHHHHHHh
Confidence 234555777776666 7777777543
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-14 Score=168.20 Aligned_cols=183 Identities=14% Similarity=0.107 Sum_probs=143.1
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc--------CC-----C-eEEEcCCCcHHHHHHHHH
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL--------EG-----G-TLCFPAGSNGNYVSAARF 715 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~--------pG-----D-~Vlv~~P~y~~~~~~~~~ 715 (903)
...+.+++.+++++.+|.+.+++ ++++|+|+++++..++.++.. +| + .|+++.++|+.+...++.
T Consensus 130 ~~~le~~~~~~la~~~g~~~~~~-~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~ 208 (504)
T 2okj_A 130 FVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAA 208 (504)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC-CEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHH
Confidence 34567888899999999874333 899999999999998888753 57 6 799999999999999999
Q ss_pred cCC---EEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEec
Q 043334 716 LKA---NIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDT 787 (903)
Q Consensus 716 ~G~---~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~De 787 (903)
.|. +++.+|++. ++.+|+++|++++++. ...+|++++|+ ||||.+.+ +++|.++|+++|+++++|+
T Consensus 209 ~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~-~~tG~i~~---l~~I~~la~~~g~~lhvD~ 282 (504)
T 2okj_A 209 LGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGT-TVYGAFDP---IQEIADICEKYNLWLHVDA 282 (504)
T ss_dssp TTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEECBSC-SSSCCBCC---HHHHHHHHHHHTCEEEEEE
T ss_pred cCCCcccEEEEecCC--CCCCCHHHHHHHHHHHHHCCCCceEEEEeCCC-CCCCCcCC---HHHHHHHHHHcCCEEEEeh
Confidence 887 899999863 6889999999998752 23588999998 99999976 8899999999999999999
Q ss_pred CCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 788 AFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 788 aY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
+|+...+..... ...+..+.. ..++..|++|.++.| .++|++++.++++++.
T Consensus 283 a~~~~~~~~~~~-----~~~~~g~~~------~D~i~~~~hK~~~~p-~~~g~l~~~~~~~~~~ 334 (504)
T 2okj_A 283 AWGGGLLMSRKH-----RHKLNGIER------ANSVTWNPHKMMGVL-LQCSAILVKEKGILQG 334 (504)
T ss_dssp TTGGGGGGCTTT-----GGGGTTGGG------CSEEEECTTSTTCCC-SCCEEEEESSTTHHHH
T ss_pred hhhhHHHhCHhh-----HhhcCCccc------CCEEEECchhhcCCC-cceEEEEEECHHHHHH
Confidence 998765533221 011111111 346778999998865 6899999987545554
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=170.33 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEe-cCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNI-PTE 726 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v-~~~ 726 (903)
+..+.+++.+++.+|.+ . .|++++| ++++..++.+++++||+|+++.|+|..+...+ +..|++++.+ +.+
T Consensus 58 ~~~~~l~~~la~~~g~~-~---~v~~~sG-t~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 132 (421)
T 2ctz_A 58 PTVDVLEKRLAALEGGK-A---ALATASG-HAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE 132 (421)
T ss_dssp HHHHHHHHHHHHHHTCS-E---EEEESSH-HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC
T ss_pred hHHHHHHHHHHHHhCCC-c---eEEecCH-HHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEECCCC
Confidence 44566777777777764 2 5777777 88999999988999999999999999887765 7889999999 763
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
|++++++++++++ ++|++++|+ ||||.+++ +++|.++|+++|+++|+|++|..+.+.+..
T Consensus 133 -------d~~~l~~~i~~~~-~~v~~~~~~-n~~G~~~~---l~~i~~~a~~~g~~livD~~~~~~g~~~~~-------- 192 (421)
T 2ctz_A 133 -------RPEEFLALTDEKT-RAWWVESIG-NPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLRP-------- 192 (421)
T ss_dssp -------CHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCCG--------
T ss_pred -------CHHHHHHhhccCC-eEEEEECCC-CCCCcccC---HHHHHHHHHHcCCEEEEECCcccccccCCc--------
Confidence 7899999998766 589999998 99999999 889999999999999999999223232221
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLN 844 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~ 844 (903)
+. . +..+++.|+||.++.+|.|+|++++.
T Consensus 193 -~~----~----~~Di~~~s~~K~l~~~g~~~G~~~~~ 221 (421)
T 2ctz_A 193 -LA----W----GAALVTHSLTKWVGGHGAVIAGAIVD 221 (421)
T ss_dssp -GG----G----TCSEEEEETTTTTTCSSCCCCEEEEE
T ss_pred -cc----c----CCeEEEECCcccccCCCCcEEEEEEe
Confidence 11 1 25689999999999999999998885
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=150.69 Aligned_cols=149 Identities=19% Similarity=0.268 Sum_probs=113.3
Q ss_pred CcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCC
Q 043334 6 SIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQP 85 (903)
Q Consensus 6 ~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~ 85 (903)
.||+|+..+..+.+.+.... .++.+|||+|||+|.+++.+++. + +|+|+|+|+.|++. .
T Consensus 2 ~v~~P~~~~~~l~~~l~~~~---~~~~~vLD~GcG~G~~~~~l~~~--~-~v~gvD~s~~~~~~---------~------ 60 (170)
T 3q87_B 2 DWYEPGEDTYTLMDALEREG---LEMKIVLDLGTSTGVITEQLRKR--N-TVVSTDLNIRALES---------H------ 60 (170)
T ss_dssp CSCCCCHHHHHHHHHHHHHT---CCSCEEEEETCTTCHHHHHHTTT--S-EEEEEESCHHHHHT---------C------
T ss_pred cccCcCccHHHHHHHHHhhc---CCCCeEEEeccCccHHHHHHHhc--C-cEEEEECCHHHHhc---------c------
Confidence 47999988877777766522 24679999999999999999987 3 99999999999988 1
Q ss_pred cchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccccccc
Q 043334 86 IYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFG 165 (903)
Q Consensus 86 ~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g 165 (903)
.+++++++|+.+.... ++||+|++||||...++... +..+.++
T Consensus 61 ----------~~~~~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~~-------------------------~~~~~~~ 103 (170)
T 3q87_B 61 ----------RGGNLVRADLLCSINQ--ESVDVVVFNPPYVPDTDDPI-------------------------IGGGYLG 103 (170)
T ss_dssp ----------SSSCEEECSTTTTBCG--GGCSEEEECCCCBTTCCCTT-------------------------TBCCGGG
T ss_pred ----------cCCeEEECChhhhccc--CCCCEEEECCCCccCCcccc-------------------------ccCCcch
Confidence 3688999999885443 48999999999997655321 0112233
Q ss_pred HHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 166 LGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 166 ~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
. .+++++.+.| |||.+++..........+.+++++.||+...+....
T Consensus 104 ~----~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 104 R----EVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERGYGTRILKVRK 150 (170)
T ss_dssp C----HHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred H----HHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCCCcEEEEEeec
Confidence 3 3455566666 999999987766667777889999999988875443
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-14 Score=167.25 Aligned_cols=204 Identities=13% Similarity=0.078 Sum_probs=154.6
Q ss_pred cHHHHHHHHHHHHcc----CCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc-----------
Q 043334 630 PSLVKAAIFESFARQ----NMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL----------- 694 (903)
Q Consensus 630 p~~v~~al~~al~~y----~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~----------- 694 (903)
+..+.+.+..++..+ ....+..++.+++++|+++.+|.+.+++ .+++|+|+++++..++.++.+
T Consensus 109 ~~~~~e~l~~~~~~~~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~-~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~ 187 (511)
T 3vp6_A 109 IGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDG-DGIFSPGGAISNMYSIMAARYKYFPEVKTKGM 187 (511)
T ss_dssp HHHHHHHHHHHHCCCSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSC-EEEEESSHHHHHHHHHHHHHHHHCTHHHHHCG
T ss_pred HHHHHHHHHHHhccCCCCcccCchHHHHHHHHHHHHHHHhCCCCCCC-ceEECCchHHHHHHHHHHHHHHhhhhhhhcCc
Confidence 334456666666542 2234456788999999999999986544 799999999998887777655
Q ss_pred ---CCCeEEEcCCCcHHHHHHHHHcCC---EEEEecCCCCCCcccCHHHHHHHhhcCC-----CcEEEEECCCCCCcccC
Q 043334 695 ---EGGTLCFPAGSNGNYVSAARFLKA---NIVNIPTESEVGFKMTEKTLVTILETVK-----KPWVYISGPTINPTGLL 763 (903)
Q Consensus 695 ---pGD~Vlv~~P~y~~~~~~~~~~G~---~vv~v~~~~~~~f~ld~~~L~~~l~~~~-----~~~vil~~P~~NPTG~v 763 (903)
+++.|+++.++|..+...++..|. +++.++++. ++.+|+++|++++++.. ..+|++++|+ ||||.+
T Consensus 188 ~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~d~--~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~-~~~G~v 264 (511)
T 3vp6_A 188 AAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNE--RGKIIPADFEAKILEAKQKGYVPFYVNATAGT-TVYGAF 264 (511)
T ss_dssp GGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSC-SSSCCB
T ss_pred ccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeecCC--CCccCHHHHHHHHHHHHhcCCCcEEEEEecCC-CCCccc
Confidence 577999999999999999999998 999999864 57899999999997641 3589999998 999999
Q ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 764 YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 764 ~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
-+ +++|.++|++||+++++|++|+........+ ...+.... ...+++.+.+|.++.| ..+|++++
T Consensus 265 d~---l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~-----~~~~~g~~------~aDsv~~~~hK~l~~p-~g~g~l~~ 329 (511)
T 3vp6_A 265 DP---IQEIADICEKYNLWLHVDAAWGGGLLMSRKH-----RHKLNGIE------RANSVTWNPHKMMGVL-LQCSAILV 329 (511)
T ss_dssp CC---HHHHHHHHHHHTCEEEEEETTGGGGGGCTTT-----GGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEE
T ss_pred cc---HHHHHHHHHHcCCEEEEEccchhhHhhChhh-----hhhccCCc------cCCEEEECcccccCCC-cCeEEEEE
Confidence 55 8999999999999999999997644432221 01111111 1356778999998765 67899998
Q ss_pred CcHHHHHHH
Q 043334 844 NHPQLVDAF 852 (903)
Q Consensus 844 ~~~~li~~l 852 (903)
.++.+.+..
T Consensus 330 ~~~~~~~~~ 338 (511)
T 3vp6_A 330 KEKGILQGC 338 (511)
T ss_dssp SSTTHHHHH
T ss_pred eCHHHHHHH
Confidence 876555554
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-15 Score=171.64 Aligned_cols=201 Identities=13% Similarity=0.094 Sum_probs=153.2
Q ss_pred CCcHHHHHHHHHHHHccCC----CCCchHHHHHHHHHHHhhcCCCCCCCCcEE---ecCchHHHHHHHHHHhccC-----
Q 043334 628 PIPSLVKAAIFESFARQNM----SESEIDVTPSIQQYIKSNFGFPIDINAEFI---YADCSQSLFNKLVLCCILE----- 695 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~----~~G~~~lr~ala~~l~~~~G~~~~pe~~I~---vt~Gs~~al~~ll~~l~~p----- 695 (903)
.+++.+.+++.+++..... ..+..++.+.+++++++.+|.+.+++ ++. +|+|+++++..++.++..+
T Consensus 67 ~~~~~v~~~l~~~~~~~~~~~~~~p~~~~le~~~~~~la~l~g~~~~~~-~~~~g~~t~ggtea~~~a~~a~~~~~~~~~ 145 (502)
T 3hbx_A 67 WMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEA-ETAVGVGTVGSSEAIMLAGLAFKRKWQNKR 145 (502)
T ss_dssp CCCHHHHHHHHHTTTCBTTCTTTCHHHHHHHHHHHHHHHHHTTCCCCSS-CCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccCCCChhcChhHHHHHHHHHHHHHHHhCCCcccc-cCCcceecCcHHHHHHHHHHHHHHHHhHHH
Confidence 4577788888887654322 12345677889999999999985444 443 4899999999888887765
Q ss_pred ---CC-----eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 696 ---GG-----TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 696 ---GD-----~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
|| .|+++.++|..+...++..|++++.+|+++ ++|.+|++++++++++++ ++|++++|+ ||||.+.+
T Consensus 146 ~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~~~~v~~~~-~~~~~d~~~l~~~i~~~t-~~v~~~~~~-n~tG~~~~-- 220 (502)
T 3hbx_A 146 KAEGKPVDKPNIVTGANVQVCWEKFARYFEVELKEVKLSE-GYYVMDPQQAVDMVDENT-ICVAAILGS-TLNGEFED-- 220 (502)
T ss_dssp HHTTCCCSCCEEEEETTCCHHHHHHHHHTTCEEEEECCBT-TBCSCCHHHHHHHCCTTE-EEEEEEBSC-TTTCCBCC--
T ss_pred HhcCCCCCCcEEEEcCCchHHHHHHHHHcCceeEEEecCC-CcCcCCHHHHHHHHhhCC-EEEEEecCC-CCCCcccC--
Confidence 87 999999999999999999999999999864 458899999999998876 589999999 99999987
Q ss_pred HHHHHHHHHHhC------CcEEEEecCCCCCc--c-CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 768 EIENILTVCAKY------GARVVIDTAFSGLE--F-NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 768 el~eI~~ia~k~------~i~VI~DeaY~~l~--f-~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
+++|.++|+++ |+++++|++|+++. | .+... +. +. .. .-.++..|.+|.+ +++.++
T Consensus 221 -l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~--~~----~~-~~------~~D~v~~s~hK~l-~~p~g~ 285 (502)
T 3hbx_A 221 -VKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELE--WD----FR-LP------LVKSINVSGHKYG-LVYAGI 285 (502)
T ss_dssp -HHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC--CS----TT-ST------TEEEEEEETTTTT-CCCSSC
T ss_pred -HHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccc--cc----cC-CC------CceEEEECccccc-CCCCCe
Confidence 77788888888 99999999997543 1 11110 11 11 11 2456777888865 577889
Q ss_pred eEEEeCcHHHH
Q 043334 839 GFLVLNHPQLV 849 (903)
Q Consensus 839 G~lv~~~~~li 849 (903)
||+++.+...+
T Consensus 286 G~~~~~~~~~l 296 (502)
T 3hbx_A 286 GWVIWRNKEDL 296 (502)
T ss_dssp EEEEESSGGGS
T ss_pred EEEEEeCHHHh
Confidence 99988765343
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=161.03 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=134.7
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh----
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC---- 692 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l---- 692 (903)
+|++..+.+. .++.+++++.+.+...... ..+..+.+++.+++++|.+ . .|++++|+ +++..++.++
T Consensus 3 ~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~la~~~~~~-~---~i~~~sGt-~a~~~al~~~~~~~ 73 (390)
T 3b8x_A 3 MINYPLASST--WDDLEYKAIQSVLDSKMFT--MGEYVKQYETQFAKTFGSK-Y---AVMVSSGS-TANLLMIAALFFTK 73 (390)
T ss_dssp --CBCSCCCC--CCHHHHHHHHHHHHHTCCS--SCHHHHHHHHHHHHHHTCS-E---EEEESCHH-HHHHHHHHHTTSSS
T ss_pred ceeccCCCCC--CCHHHHHHHHHHHHcCCCC--CChHHHHHHHHHHHHHCCC-c---EEEECCHH-HHHHHHHHHHHhhh
Confidence 3444444433 4677888888887642221 1223344444555555654 2 45555555 6888889888
Q ss_pred ---ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHH
Q 043334 693 ---ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEI 769 (903)
Q Consensus 693 ---~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel 769 (903)
+++||+|+++.|+|..+...++..|++++.++++++ +|.+|++++++.+++++ ++|++++ ++|... ++
T Consensus 74 ~~~~~~g~~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~d~~~l~~~i~~~~-~~v~~~~----~~g~~~---~~ 144 (390)
T 3b8x_A 74 KPRLKKGDEIIVPAVSWSTTYYPLQQYGLRVKFVDIDIN-TLNIDIESLKEAVTDST-KAILTVN----LLGNPN---NF 144 (390)
T ss_dssp SCSCCTTCEEEEESSSCHHHHHHHHHTTCEEEEECBCTT-TCSBCHHHHHHHCCTTE-EEEEEEC----GGGCCC---CH
T ss_pred hcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecCcc-ccCcCHHHHHHHhCcCC-eEEEEEC----CccChh---hH
Confidence 889999999999999999999999999999999753 57899999999998765 4777774 345444 48
Q ss_pred HHHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhhhhhhccCCCCCCceEEEc--cCchhcccccceeeEEEeCcH
Q 043334 770 ENILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLG--GLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 770 ~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~--S~SK~~g~~GlRiG~lv~~~~ 846 (903)
++|.++|+++|+++|+|++|+. ..+++.. ++. ..++... ..+|.++ +| +.|+++++++
T Consensus 145 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~------------~g~-----~~~~~~~s~~~~k~~~-~g-~gG~~~~~~~ 205 (390)
T 3b8x_A 145 DEINKIIGGRDIILLEDNCESMGATFNNKC------------AGT-----FGLMGTFSSFYSNHIA-TM-EGGCIVTDDE 205 (390)
T ss_dssp HHHHHHHTTSCCEEEEECTTCTTCEETTEE------------TTS-----SSSEEEEECCTTSSSC-SS-SCEEEEESCH
T ss_pred HHHHHHHHHcCCEEEEECcCcccCEECCcc------------ccc-----ccceEEEEccCCCCCc-cC-CceEEEeCCH
Confidence 9999999999999999999973 3332211 111 1122222 2345553 23 4599999875
Q ss_pred HHHHHHHh
Q 043334 847 QLVDAFSS 854 (903)
Q Consensus 847 ~li~~l~~ 854 (903)
++.+.+..
T Consensus 206 ~l~~~~~~ 213 (390)
T 3b8x_A 206 EIYHILLC 213 (390)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 47665543
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=173.68 Aligned_cols=167 Identities=12% Similarity=0.067 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCC--
Q 043334 653 VTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVG-- 730 (903)
Q Consensus 653 lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~-- 730 (903)
..+.+++++++ +|.+ + ++++|+|+++++..++.+++++||.|+++.|+|..+...+...|++++.++...+++
T Consensus 58 ~~~~~~~~la~-~g~~-~---~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~ 132 (446)
T 2x3l_A 58 VILKSMKQVEK-HSDY-D---GYFLVNGTTSGILSVIQSFSQKKGDILMARNVHKSVLHALDISQQEGHFIETHQSPLTN 132 (446)
T ss_dssp HHHHHHHHHCS-CTTE-E---EEEESSHHHHHHHHHHHTTTTSSSCEEECTTCCHHHHHHHHHHTCCEEECEEEECTTTS
T ss_pred HHHHHHHHHHh-cCCC-c---eEEEeCCHHHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHcCCeEEEEeCeeccccC
Confidence 44667777777 7865 2 799999999999999999999999999999999999999999999999998832222
Q ss_pred --cccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-CccCCCCCCCCchhhh
Q 043334 731 --FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG-LEFNYEGWGGWDLEGC 807 (903)
Q Consensus 731 --f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~-l~f~~~~~s~~s~~~~ 807 (903)
+.+|++++ +.+++ +++++++| ||||.+++ +++|.++|+++|++||+||+|+. +.|.+.+ .+ .
T Consensus 133 ~~~~~d~~~l---~~~~~-~~v~~~~~--n~~G~~~~---l~~I~~l~~~~~~~livDea~~~~~~f~~~~---~~---~ 197 (446)
T 2x3l_A 133 HYNKVNLSRL---NNDGH-KLVVLTYP--NYYGETFN---VEEVIKSLHQLNIPVLIDEAHGAHFGLQGFP---DS---T 197 (446)
T ss_dssp SEEEEEC----------C-CEEEEESS--CTTSCCCC---HHHHHHHHHHTTCCEEEECTTCTTTTSTTSC---CC---G
T ss_pred cCCCCCHHHH---cCCCc-eEEEEECC--CCCeEecC---HHHHHHHHHhcCCeEEEcchhhhhhccCCCC---CC---h
Confidence 56788877 34455 58889985 56999998 78999999999999999999985 4455431 11 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLV 849 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li 849 (903)
.. + +..+++.|+||.++ ++.++||++++++ ++
T Consensus 198 ~~-~-------g~Di~~~S~~K~l~-~~~g~g~l~~~~~-~i 229 (446)
T 2x3l_A 198 LN-Y-------QADYVVQSFHKTLP-ALTMGSVLYIHKN-AP 229 (446)
T ss_dssp GG-G-------TCSEEEECHHHHSS-SCTTCEEEEEETT-CT
T ss_pred HH-c-------CCCEEEECCccccc-cccccEEEEEcCC-cC
Confidence 11 1 13489999999653 3345899999876 43
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=150.44 Aligned_cols=141 Identities=12% Similarity=0.149 Sum_probs=107.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..|+.+|+|+|+|+.+++.|++|+..+++ +++.++++|+.++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 104 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----------------PNIKLLWVDGSDLT 104 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----------------SSEEEEECCSSCGG
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC----------------CCEEEEeCCHHHHH
Confidence 46799999999999999999998889999999999999999999988876 48999999998854
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||+|++|+|..... . .+.... ..+..+++++.++|+|||.+++
T Consensus 105 ~~~~~~~~D~i~~~~~~~~~~----~-----~~~~~~---------------------~~~~~~l~~~~~~LkpgG~l~~ 154 (214)
T 1yzh_A 105 DYFEDGEIDRLYLNFSDPWPK----K-----RHEKRR---------------------LTYKTFLDTFKRILPENGEIHF 154 (214)
T ss_dssp GTSCTTCCSEEEEESCCCCCS----G-----GGGGGS---------------------TTSHHHHHHHHHHSCTTCEEEE
T ss_pred hhcCCCCCCEEEEECCCCccc----c-----chhhhc---------------------cCCHHHHHHHHHHcCCCcEEEE
Confidence 1 1223899999997632110 0 000000 0123789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.+........+.+.+++.||.......+
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~~~~~d 182 (214)
T 1yzh_A 155 KTDNRGLFEYSLVSFSQYGMKLNGVWLD 182 (214)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHHCCCeeeecccc
Confidence 8865444455567888899998777543
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=166.76 Aligned_cols=199 Identities=16% Similarity=0.105 Sum_probs=140.3
Q ss_pred eEEccCCCCCCCCcHHHHHHH--HHHHHccCC-----CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchH---HHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAI--FESFARQNM-----SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ---SLFN 686 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al--~~al~~y~~-----~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~---~al~ 686 (903)
...++.|.++...|+.+.+.+ ...+..|.+ ..|..++.+++++.+++.+|.+.. ++++++|++ +++.
T Consensus 66 ~~~~~~g~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~---~i~~~~g~taa~ea~~ 142 (438)
T 1wyu_A 66 KAFLGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIA---NASMYDGATALAEGVL 142 (438)
T ss_dssp TCCCCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEE---CSCBSSHHHHHHHHHH
T ss_pred ccccCCCccCCcCcHHHHHHHhcchhhhcCCCCcchhhhhHHHHHHHHHHHHHHHhCCCcc---ceEEeCcHHHHHHHHH
Confidence 457778888877787775554 333455543 345667788999999999998644 799999999 4444
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+++ .+++||+|+++.|+|+.+...+ +..|++++.++. + ++.+|+++ +++++ ++|++++| ||||.
T Consensus 143 ~a~--~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~~v~~-~--~~~~d~~~----i~~~t-~~v~i~~p--n~tG~ 210 (438)
T 1wyu_A 143 LAL--RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPL-E--GGRTPLPE----VGEEV-GAVVVQNP--NFLGA 210 (438)
T ss_dssp HHH--HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECC-B--TTBCCCCC----CCTTE-EEEEEESS--CTTSB
T ss_pred HHH--hcCCCCEEEEcCccCHhHHHHHHHHHHHCCCEEEEEcC-c--CCccCHHH----hCCCe-EEEEEECC--CCCeE
Confidence 332 3579999999999999988655 458999999997 2 34677665 55555 58999997 89999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc----cccccee
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM----LTGALKF 838 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~----g~~GlRi 838 (903)
+.+ +++|.++|+++|+++|+|-.- ..++.... + ..+ +..+++.| ||.| ++.|.|+
T Consensus 211 ~~~---l~~i~~la~~~g~~vivd~d~--~a~g~~~~------~--~~~-------g~D~~~~s-~kk~~~~~~~~Gp~~ 269 (438)
T 1wyu_A 211 LED---LGPFAEAAHGAGALFVAVADP--LSLGVLKP------P--GAY-------GADIAVGD-GQSLGLPMGFGGPHF 269 (438)
T ss_dssp CCC---HHHHHHHHHHTTCEEEEECCT--TGGGTBCC------H--HHH-------TCSEEEEE-CTTTTCCCGGGCSCC
T ss_pred Eec---HHHHHHHHHHcCCEEEEEech--hhccCcCC------C--ccC-------CCCEEEEC-CcccCCCccCCCCCe
Confidence 986 889999999999999966221 11221110 1 111 12355555 6665 4667899
Q ss_pred eEEEeCcHHHHHHH
Q 043334 839 GFLVLNHPQLVDAF 852 (903)
Q Consensus 839 G~lv~~~~~li~~l 852 (903)
||++++++ +++.+
T Consensus 270 G~l~~~~~-~~~~l 282 (438)
T 1wyu_A 270 GFLATKKA-FVRQL 282 (438)
T ss_dssp EEEEECGG-GGGGC
T ss_pred eEEEEcHH-HHHhC
Confidence 99999887 66554
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-13 Score=154.73 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=135.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHH--HHHHHcC--CEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYV--SAARFLK--ANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~--~~~~~~G--~~vv~v~~~ 726 (903)
.++.+++++.+++.+|.+ + .|++|+|+++++..++. ++.+||+|++++++|..+. ..++..| .+++.++.+
T Consensus 34 ~~~~~~~~~~l~~~~~~~-~---~v~~~~sgt~a~~~~~~-~~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 34 QEVMNDLLSNLKTVYNAE-A---AVIIPGSGTYGMEAVAR-QLTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHTCS-E---EEEEESCHHHHHHHHHH-HHCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHhCCC-C---EEEEcCChhHHHHHHHH-hCCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEecc
Confidence 356677888888888876 3 79999999999998775 4579999999999998753 3455556 488888764
Q ss_pred CC------CCc-ccCHHHHHHHhhc-CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCC
Q 043334 727 SE------VGF-KMTEKTLVTILET-VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEG 798 (903)
Q Consensus 727 ~~------~~f-~ld~~~L~~~l~~-~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~ 798 (903)
.. ..| .+|++++++.+++ ++ ++|++++++ ||||.+++.+++++|.++|+++|+++|+|++++ ++..
T Consensus 109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~-~~v~~~~~~-~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~----g~~~ 182 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDIETAVAKIKEDKS-AIVYAPHVE-TSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS----GCVW 182 (379)
T ss_dssp ESSCCSSCCCEECCCHHHHHHHHHHHTC-SEEEEESEE-TTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC----TTCC
T ss_pred ccccccccCCCCCCCHHHHHHHHhhcCC-cEEEEEeec-CCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc----CCcc
Confidence 31 112 4799999999964 55 588899887 999999999999999999999999999999974 2222
Q ss_pred CCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 799 WGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 799 ~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
.. +... +..+++.|++|.++. +..+|+++++++ +++.+..
T Consensus 183 ---~~----~~~~-------~~d~~~~s~~K~l~~-~~g~g~~~~~~~-~~~~l~~ 222 (379)
T 3ke3_A 183 ---LD----MKEL-------GIDVLISAPQKGWSS-TPCAGLVMLSAA-AIKKVES 222 (379)
T ss_dssp ---CC----HHHH-------TCSEEEECTTTTTCS-CCCEEEEEECHH-HHHHHHT
T ss_pred ---cc----cccc-------CCCEEEecchhhcCC-CCceEEEEECHH-HHHhhhc
Confidence 11 1111 246889999998864 345899999987 8887764
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=169.73 Aligned_cols=224 Identities=7% Similarity=-0.022 Sum_probs=136.2
Q ss_pred hccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCCC-------CCc---hHHHHHHHH
Q 043334 591 MIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNMS-------ESE---IDVTPSIQQ 659 (903)
Q Consensus 591 ~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~~-------~G~---~~lr~ala~ 659 (903)
+..+.+..+..+..... ...+.|.|-.+++. +++.+++++...+.. |... .|. ..+.+..++
T Consensus 35 l~~~d~~~~~~~~~e~~-----rq~~~i~lias~n~--~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~ 107 (490)
T 2a7v_A 35 LSDSDPEMWELLQREKD-----RQCRGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQR 107 (490)
T ss_dssp HHHHCHHHHHHHHHHHH-----HHHHSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHH-----HHHcCceEECCCCC--CCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHH
Confidence 34444455555553221 11256777776554 689999998887643 3211 122 244555668
Q ss_pred HHHhhcCCCCCCCC-cEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHH--------HHHHcCCE--EEEecCCCC
Q 043334 660 YIKSNFGFPIDINA-EFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVS--------AARFLKAN--IVNIPTESE 728 (903)
Q Consensus 660 ~l~~~~G~~~~pe~-~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~--------~~~~~G~~--vv~v~~~~~ 728 (903)
++++.+|.+.+ +. -.+.++++++++..++.++++|||+|+++++.|.++.. .+...|.. ++++++++
T Consensus 108 ~~a~l~g~~~~-~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~- 185 (490)
T 2a7v_A 108 RALEAFDLDPA-QWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNP- 185 (490)
T ss_dssp HHHHHTTCCTT-TEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCT-
T ss_pred HHHHHcCCCcc-cCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEeccccc-
Confidence 99999998753 11 12344455778888899999999999999999876432 23345654 44555553
Q ss_pred CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhh
Q 043334 729 VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 729 ~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~ 807 (903)
+++.+|++++++.+.+.+.++|+++.|+ ||+ ..+ +++|.++|+++|+++++|+++. ++.+.+... ..
T Consensus 186 ~~~~iD~d~le~~l~~~~~klIi~~~s~-~~~--~~d---l~~i~~ia~~~g~~livD~Ah~~glv~~g~~~------~~ 253 (490)
T 2a7v_A 186 KTGLIDYNQLALTARLFRPRLIIAGTSA-YAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIP------SP 253 (490)
T ss_dssp TTCSBCHHHHHHHHHHHCCSEEEECCSS-CCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC------CG
T ss_pred ccCCcCHHHHHHHHhhcCCcEEEEcCCC-CCC--ccc---HHHHHHHHHHcCCEEEEccccccccccCCcCC------CC
Confidence 3578999999999864333588888887 986 334 8899999999999999999963 344444321 11
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+ .. ..+++.|+||+++ |.|.|++++++.
T Consensus 254 ~---~~------aDiv~~S~hK~l~--Gp~GG~i~~~~~ 281 (490)
T 2a7v_A 254 F---KH------ADIVTTTTHKTLR--GARSGLIFYRKG 281 (490)
T ss_dssp G---GT------CSEEEEESSGGGC--SCSCEEEEEECS
T ss_pred C---CC------CCEEEECCcccCc--cccchheeeccc
Confidence 1 11 3578999999884 788899999863
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-14 Score=142.48 Aligned_cols=137 Identities=13% Similarity=0.082 Sum_probs=95.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+..+++ ++++++++|...+.
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~----------------~~v~~~~~~~~~l~ 83 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGI----------------ENTELILDGHENLD 83 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTC----------------CCEEEEESCGGGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEeCcHHHHH
Confidence 6789999999999999999987 78999999999999999999988876 58999998887753
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|++|++|+...+..... ..+....+++++.++|||||.+++.
T Consensus 84 ~~~~~~fD~v~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 134 (185)
T 3mti_A 84 HYVREPIRAAIFNLGYLPSADKSVIT-----------------------------KPHTTLEAIEKILDRLEVGGRLAIM 134 (185)
T ss_dssp GTCCSCEEEEEEEEC----------------------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhccCCcCEEEEeCCCCCCcchhccc-----------------------------ChhhHHHHHHHHHHhcCCCcEEEEE
Confidence 22234899999999887643221110 0111236789999999999999986
Q ss_pred eCCCC-----cHHHHHHHHHH---CCCeEEEE
Q 043334 190 MGGRP-----GQGVCKRLFER---RGFRVDKL 213 (903)
Q Consensus 190 ~~~~~-----~~~~l~~ll~~---~gf~~~~~ 213 (903)
..... ....+.+++.. .+|.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (185)
T 3mti_A 135 IYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLY 166 (185)
T ss_dssp EC------CHHHHHHHHHHHHSCTTTEEEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHhCCCceEEEEEe
Confidence 54321 12333445544 34665554
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=161.04 Aligned_cols=181 Identities=16% Similarity=0.141 Sum_probs=142.0
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc-------c-CCC------eEEEcCCCcHHHHHHHHH
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI-------L-EGG------TLCFPAGSNGNYVSAARF 715 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~-------~-pGD------~Vlv~~P~y~~~~~~~~~ 715 (903)
..++.+.+.+++++.+|.+.. ++++|+|+++++..++.++. + +|| .|+++.++|+.+...++.
T Consensus 146 ~~~le~~~~~~la~l~g~~~~---~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~ 222 (515)
T 2jis_A 146 FVLMEEEVLRKLRALVGWSSG---DGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAF 222 (515)
T ss_dssp HHHHHHHHHHHHHHHHTCSSC---EEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCC---CeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHH
Confidence 456678889999999998733 89999999999888777763 2 576 899999999999999999
Q ss_pred cCC---EEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEec
Q 043334 716 LKA---NIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDT 787 (903)
Q Consensus 716 ~G~---~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~De 787 (903)
.|. +++.+|+++ ++.+|+++|++++++. ...+|++++|+ ||||.+.+ +++|.++|+++|+++++|+
T Consensus 223 ~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~-n~tG~i~~---l~~I~~la~~~g~~l~vD~ 296 (515)
T 2jis_A 223 LGLGTDSVRVVKADE--RGKMVPEDLERQIGMAEAEGAVPFLVSATSGT-TVLGAFDP---LEAIADVCQRHGLWLHVDA 296 (515)
T ss_dssp TTSCGGGEEEECBCT--TSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSC-TTTCCBCC---HHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCCcEEEEecCC--CCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCC-CCCCCccC---HHHHHHHHHHcCCeEEEeh
Confidence 988 999999863 5789999999998752 23589999998 99999987 8899999999999999999
Q ss_pred CCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH-HHHHH
Q 043334 788 AFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP-QLVDA 851 (903)
Q Consensus 788 aY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~-~li~~ 851 (903)
+|+...+..+.. ...+..+. ...+++.|++|.++.| .++|++++.++ .+++.
T Consensus 297 a~~~~~~~~~~~-----~~~~~g~~------~aD~v~~s~hK~l~~p-~g~G~l~~~~~~~~~~~ 349 (515)
T 2jis_A 297 AWGGSVLLSQTH-----RHLLDGIQ------RADSVAWNPHKLLAAG-LQCSALLLQDTSNLLKR 349 (515)
T ss_dssp TTGGGGGGCTTT-----GGGGTTGG------GCSEEEECTTSTTCCC-SCCEEEEESCCSCHHHH
T ss_pred hhhhHHHhChhh-----HhhcCCCc------cCCEEEECcccccCCC-CCeeEEEEeChHHHHHH
Confidence 998766543321 01111111 2457889999998744 57999999875 45554
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=144.52 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=96.2
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
+...+++.+....+ .++.+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.|++|+..+++
T Consensus 29 ~~~~l~~~l~~~~~--~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~------------- 92 (189)
T 3p9n_A 29 VRESLFNIVTARRD--LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGL------------- 92 (189)
T ss_dssp HHHHHHHHHHHHSC--CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHHHHhccC--CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC-------------
Confidence 33444555544221 36789999999999999987774 456899999999999999999988876
Q ss_pred ccCCcEEEEEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 93 TLLDRVEFHESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
++++++++|+.+.... ..++||+|++||||.... +.+..
T Consensus 93 ---~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~-------------------------------------~~~~~ 132 (189)
T 3p9n_A 93 ---SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS-------------------------------------ADVDA 132 (189)
T ss_dssp ---SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSCH-------------------------------------HHHHH
T ss_pred ---CceEEEEccHHHHHhhccCCCccEEEECCCCCcch-------------------------------------hhHHH
Confidence 4899999999887532 134899999999987421 11236
Q ss_pred HHHHHhh--cccCCcEEEEEeCCC
Q 043334 172 AVEEGIG--VIKPSGIMIFNMGGR 193 (903)
Q Consensus 172 ~l~~~~~--~LkpgG~ll~~~~~~ 193 (903)
+++.+.+ +|+|||.+++.....
T Consensus 133 ~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 133 ILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HHHHHHhcCccCCCeEEEEEecCC
Confidence 7888888 999999999987653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=147.70 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=105.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+|+..|+.+|+|+|+|+.|++.|++|+..+++ +++.++++|+.++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~----------------~nv~~~~~d~~~l~ 101 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----------------QNVKLLNIDADTLT 101 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----------------SSEEEECCCGGGHH
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC----------------CCEEEEeCCHHHHH
Confidence 46799999999999999999998889999999999999999999988876 47999999998753
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||.|+.|.|.......+ .... + ....+++++.++|||||.+++
T Consensus 102 ~~~~~~~~d~v~~~~~~p~~~~~~----~~~r---------------l-----------~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 102 DVFEPGEVKRVYLNFSDPWPKKRH----EKRR---------------L-----------TYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp HHCCTTSCCEEEEESCCCCCSGGG----GGGS---------------T-----------TSHHHHHHHHHHHTTSCEEEE
T ss_pred hhcCcCCcCEEEEECCCCCcCccc----cccc---------------c-----------CcHHHHHHHHHHcCCCCEEEE
Confidence 1 1123799998874421100000 0000 0 023789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.+........+.+.+.+.||.......+
T Consensus 152 ~td~~~~~~~~~~~~~~~g~~~~~~~~d 179 (213)
T 2fca_A 152 KTDNRGLFEYSLKSFSEYGLLLTYVSLD 179 (213)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHHCCCcccccccc
Confidence 8865444445566788889987766433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-15 Score=157.19 Aligned_cols=206 Identities=18% Similarity=0.296 Sum_probs=126.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|+++...++ .+++++++|+.+..
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~~~~~~~d~~~~~ 92 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETN-----------------RHVDFWVQDMRELE 92 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTT-----------------CCCEEEECCGGGCC
T ss_pred CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcC-----------------CceEEEEcChhhcC
Confidence 4689999999999999998876 799999999999999999986654 36899999998875
Q ss_pred cCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. ++||+|+++. .... +. ..+....+++++.++|||||.+++
T Consensus 93 ~~--~~fD~v~~~~~~~~~------~~-----------------------------~~~~~~~~l~~~~~~L~pgG~l~~ 135 (243)
T 3d2l_A 93 LP--EPVDAITILCDSLNY------LQ-----------------------------TEADVKQTFDSAARLLTDGGKLLF 135 (243)
T ss_dssp CS--SCEEEEEECTTGGGG------CC-----------------------------SHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CC--CCcCEEEEeCCchhh------cC-----------------------------CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 44 4899999753 1111 10 011234789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecccCCCcccHHHHHHhhh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGLSGDLPICARTAWAYGK 268 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~~~~~p~~~~~~~~~~~ 268 (903)
.+... ..+.+++....|..........|.. .+..... . + .....++.. .
T Consensus 136 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~--~------~~~~~~~~~----------------~ 184 (243)
T 3d2l_A 136 DVHSP---YKMETLFNGKTYATHAEQSSYIWFA---DPGEEPL-S--V------VHELTFFIE----------------G 184 (243)
T ss_dssp EEECH---HHHHTTTSSEEEEEECSSEEEEEEE---EECSSTT-E--E------EEEEEEEEE----------------C
T ss_pred EcCCH---HHHHHhcCCcceeEECCCcEEEEEe---ecCcccc-E--E------EEEEEEEEE----------------c
Confidence 77553 2211122111110000000000000 0000000 0 0 000001100 0
Q ss_pred cCcceeeeeeeeeccccCchhHHHHHHHHh-ccccccccccccccccccccccccchHH
Q 043334 269 AGGRISHALSVYSCQLHQPNQVKKIFKFLK-NGFHEISSSLDLSFEDDSVADEKIPFLA 326 (903)
Q Consensus 269 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~~d~~~~~~~~~~~~~~~~~ 326 (903)
.++...+ +.+.+..+.+..+++.++|+ +||+.+..+.++...+....+.|+.+||
T Consensus 185 ~~~~~~~---~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va 240 (243)
T 3d2l_A 185 EDGRYDR---VDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVA 240 (243)
T ss_dssp TTSCEEE---EEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEE
T ss_pred CCCceEE---EEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEE
Confidence 0010000 11234446678899999999 9999999999999888777888887765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=154.14 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=85.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.++.+|||+|||+|..++.+++.+ ++.+|+|+|+|+.|++.|++++...+. ..+++++++|+.
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~---------------~~~v~~~~~D~~ 133 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA---------------PTPVDVIEGDIR 133 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC---------------SSCEEEEESCTT
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc---------------CceEEEeecccc
Confidence 368899999999999999999875 467999999999999999999977665 358999999999
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+++.+ +||+|++|--.. .+.. .....++++++++|||||.+
T Consensus 134 ~~~~~---~~d~v~~~~~l~------~~~~------------------------------~~~~~~l~~i~~~LkpGG~l 174 (261)
T 4gek_A 134 DIAIE---NASMVVLNFTLQ------FLEP------------------------------SERQALLDKIYQGLNPGGAL 174 (261)
T ss_dssp TCCCC---SEEEEEEESCGG------GSCH------------------------------HHHHHHHHHHHHHEEEEEEE
T ss_pred ccccc---ccccceeeeeee------ecCc------------------------------hhHhHHHHHHHHHcCCCcEE
Confidence 87543 699999752211 1111 11236899999999999999
Q ss_pred EEE
Q 043334 187 IFN 189 (903)
Q Consensus 187 l~~ 189 (903)
++.
T Consensus 175 ii~ 177 (261)
T 4gek_A 175 VLS 177 (261)
T ss_dssp EEE
T ss_pred EEE
Confidence 983
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=140.38 Aligned_cols=147 Identities=12% Similarity=0.001 Sum_probs=116.2
Q ss_pred CCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCC
Q 043334 5 PSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQ 84 (903)
Q Consensus 5 p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~ 84 (903)
+|.+.++++...+++.+.. .++.+|||+|||+|.++..+++.+++.+|+|+|+|+.+++.|++|+..+++
T Consensus 5 ~g~~t~~~~~~~~~~~~~~-----~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----- 74 (178)
T 3hm2_A 5 DGQLTKQHVRALAISALAP-----KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV----- 74 (178)
T ss_dssp -CCSHHHHHHHHHHHHHCC-----CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----
T ss_pred CCcccHHHHHHHHHHHhcc-----cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----
Confidence 5666777777766666542 256899999999999999999988889999999999999999999988776
Q ss_pred CcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccc
Q 043334 85 PIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQF 164 (903)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~ 164 (903)
.+++ ++++|..+......++||+|+++.+...
T Consensus 75 ----------~~~~-~~~~d~~~~~~~~~~~~D~i~~~~~~~~------------------------------------- 106 (178)
T 3hm2_A 75 ----------SDRI-AVQQGAPRAFDDVPDNPDVIFIGGGLTA------------------------------------- 106 (178)
T ss_dssp ----------TTSE-EEECCTTGGGGGCCSCCSEEEECC-TTC-------------------------------------
T ss_pred ----------CCCE-EEecchHhhhhccCCCCCEEEECCcccH-------------------------------------
Confidence 2478 8889987654443248999997654431
Q ss_pred cHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 165 GLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 165 g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
..+++++.++|||||++++............+++++.|+......
T Consensus 107 -----~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 107 -----PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp -----TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred -----HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcCCeeEEEE
Confidence 157899999999999999988776666777788999998877653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.7e-14 Score=146.53 Aligned_cols=127 Identities=17% Similarity=0.266 Sum_probs=106.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++..+..+|+|+|+|+.+++.|++|+..+|++ ++++++.+|.++.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---------------~~i~~~~~d~l~~ 78 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK---------------EKIQVRLANGLAA 78 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---------------TTEEEEECSGGGG
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------ceEEEEECchhhh
Confidence 4678999999999999999999877789999999999999999999999983 5899999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
....+ +||+|+. ...|-+++..+++++.+.|+++|++++
T Consensus 79 l~~~~-~~D~Ivi----------------------------------------aG~Gg~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 79 FEETD-QVSVITI----------------------------------------AGMGGRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp CCGGG-CCCEEEE----------------------------------------EEECHHHHHHHHHHTGGGCTTCCEEEE
T ss_pred cccCc-CCCEEEE----------------------------------------cCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 54321 6998872 012334566899999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... .+...+++++.++||.+...
T Consensus 118 q~~--~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 118 QPN--NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EES--SCHHHHHHHHHHTTEEEEEE
T ss_pred ECC--CCHHHHHHHHHHCCCEEEEE
Confidence 765 46777889999999998775
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-14 Score=162.83 Aligned_cols=204 Identities=12% Similarity=0.091 Sum_probs=148.8
Q ss_pred CCcHHHHHHHHHHHHccC-CCC----CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh----c-----
Q 043334 628 PIPSLVKAAIFESFARQN-MSE----SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC----I----- 693 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~-~~~----G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l----~----- 693 (903)
+.++.+.+++.......+ ..+ +..++.+.+++++++.+|.+.. + ++++|+|+++++..++.+. +
T Consensus 111 ~~~~~v~~~~~~~~~n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~-~-~~~~t~ggt~a~~~al~~ar~~~~~~~~~ 188 (497)
T 2qma_A 111 PLMPAVAAEAMIAALNQSMDSWDQASSATYVEQKVVNWLCDKYDLSEK-A-DGIFTSGGTQSNQMGLMLARDWIADKLSG 188 (497)
T ss_dssp CBHHHHHHHHHHHHHCCCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTT-C-EEEEESSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHhhcccccchhhChHHHHHHHHHHHHHHHHhCCCCC-C-CeEEcCCchHHHHHHHHHHHHHHHHhhcc
Confidence 356677776655443321 111 2345677889999999998631 2 8999999999998888773 3
Q ss_pred ----cC------CC-eEEEcCCCcHHHHHHHHHcCC---EEEEecCCCCCCcccCHHHHHHHhhcC----CC-cEEEEEC
Q 043334 694 ----LE------GG-TLCFPAGSNGNYVSAARFLKA---NIVNIPTESEVGFKMTEKTLVTILETV----KK-PWVYISG 754 (903)
Q Consensus 694 ----~p------GD-~Vlv~~P~y~~~~~~~~~~G~---~vv~v~~~~~~~f~ld~~~L~~~l~~~----~~-~~vil~~ 754 (903)
.+ || .|+++.++|..+...++..|. +++.+|++. ++.+|+++|++.+++. ++ .+|+++.
T Consensus 189 ~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~~~--~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~ 266 (497)
T 2qma_A 189 HSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDANA--DGTMDITKLDEVIAQAKAEGLIPFAIVGTA 266 (497)
T ss_dssp CCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECBCT--TSSBCGGGHHHHHHHHHHTTCEEEEEEEEB
T ss_pred cchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEecCC--CCcCCHHHHHHHHHHHHHCCCcceEEEEcC
Confidence 13 46 899999999999999999876 899999863 6789999999998753 22 2788888
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|+ ||||.+.+ +++|.++|+++|+++++|++|+...+... . ...+..+. ...+++.|++|.++.|
T Consensus 267 ~~-~~tG~~~~---l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~-----~~~~~gi~------~~D~i~~s~hK~l~~p 330 (497)
T 2qma_A 267 GT-TDHGAIDD---LDFIADMAVKHDMWMHVDGAYGGALILSS-H-----KSRLKGVE------RAHSISVDFHKLFYQT 330 (497)
T ss_dssp SC-TTTCCBCC---HHHHHHHHHHHTCEEEEEETTGGGGGGST-T-----GGGGTTGG------GCSEEEEETTTTTCCC
T ss_pred CC-CCCCCCCC---HHHHHHHHHHcCCEEEEehhhhHHHHhCc-c-----hHhhcCcc------cCCEEEEcchhccCCC
Confidence 98 99999876 88999999999999999999976654332 1 01111121 1346788999998766
Q ss_pred cceeeEEEeCcHHHHHHH
Q 043334 835 ALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l 852 (903)
.++||+++.++..++.+
T Consensus 331 -~~~G~l~~~~~~~~~~~ 347 (497)
T 2qma_A 331 -ISCGALLVNDKSNFKFL 347 (497)
T ss_dssp -SSCEEEEESCGGGGGGG
T ss_pred -cceEEEEEeCHHHHHHh
Confidence 69999999876444433
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=141.73 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=103.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++..+..+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+.
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~ 102 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA----------------RNVTLVEAFAPEG 102 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC----------------TTEEEEECCTTTT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC----------------CcEEEEeCChhhh
Confidence 357899999999999999999998779999999999999999999988876 5899999999776
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... .+||+|+++.+.. . +..+++++.+.|||||++++
T Consensus 103 ~~~~-~~~D~i~~~~~~~------~-----------------------------------~~~~l~~~~~~LkpgG~l~~ 140 (204)
T 3e05_A 103 LDDL-PDPDRVFIGGSGG------M-----------------------------------LEEIIDAVDRRLKSEGVIVL 140 (204)
T ss_dssp CTTS-CCCSEEEESCCTT------C-----------------------------------HHHHHHHHHHHCCTTCEEEE
T ss_pred hhcC-CCCCEEEECCCCc------C-----------------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 5443 3799999765442 0 22789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCe
Q 043334 189 NMGGRPGQGVCKRLFERRGFR 209 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~ 209 (903)
..........+.+++++.||.
T Consensus 141 ~~~~~~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 141 NAVTLDTLTKAVEFLEDHGYM 161 (204)
T ss_dssp EECBHHHHHHHHHHHHHTTCE
T ss_pred EecccccHHHHHHHHHHCCCc
Confidence 877666667778899999993
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=159.32 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=107.8
Q ss_pred ccCCcccCc---chhHHHHHHhhcCCC-CCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Q 043334 3 VIPSIFIPE---DWSFTFYEGLNRHPD-SILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA 78 (903)
Q Consensus 3 ~~p~vfiP~---~w~~~~~~~L~~~~~-~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g 78 (903)
..|++|... .-+..+.+.+..... ...++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+..++
T Consensus 202 ~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~ 279 (381)
T 3dmg_A 202 HLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANA 279 (381)
T ss_dssp ECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTT
T ss_pred eCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcC
Confidence 568999943 333444444433211 1236789999999999999999987 6799999999999999999998887
Q ss_pred cccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 79 LDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 79 l~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
+ +++++++|+.+.... .++||+|++||||.......
T Consensus 280 ~-----------------~v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~~~~-------------------------- 315 (381)
T 3dmg_A 280 L-----------------KAQALHSDVDEALTE-EARFDIIVTNPPFHVGGAVI-------------------------- 315 (381)
T ss_dssp C-----------------CCEEEECSTTTTSCT-TCCEEEEEECCCCCTTCSSC--------------------------
T ss_pred C-----------------CeEEEEcchhhcccc-CCCeEEEEECCchhhccccc--------------------------
Confidence 6 489999999987654 24899999999998532211
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcH
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQ 196 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~ 196 (903)
.+....+++++.++|||||.+++..+.....
T Consensus 316 -------~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~ 346 (381)
T 3dmg_A 316 -------LDVAQAFVNVAAARLRPGGVFFLVSNPFLKY 346 (381)
T ss_dssp -------CHHHHHHHHHHHHHEEEEEEEEEEECTTSCH
T ss_pred -------HHHHHHHHHHHHHhcCcCcEEEEEEcCCCCh
Confidence 1223478999999999999999988765544
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=166.70 Aligned_cols=172 Identities=12% Similarity=0.157 Sum_probs=130.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcc-
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFK- 732 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~- 732 (903)
.....+.+++.+|.+. .+++++|+++++..++.++++|||.|+++.|+|.++...+...|++++.++.+.+ +|.
T Consensus 207 v~~~ee~la~l~G~d~----~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~~h~s~~~~~~~~G~~~v~v~~~~~-~~g~ 281 (755)
T 2vyc_A 207 FGESEKYAARVFGADR----SWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSRN-RYGI 281 (755)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHHCCEEEEECCCBC-TTSC
T ss_pred HHHHHHHHHHHhCCCc----eEEECCcHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHcCCEEEEEeCCCC-cccc
Confidence 3456666777778652 5899999999999999999999999999999999999999999999999998642 333
Q ss_pred ---c-----CHHHHHHHhhcC--CC-------cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-cc
Q 043334 733 ---M-----TEKTLVTILETV--KK-------PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGL-EF 794 (903)
Q Consensus 733 ---l-----d~~~L~~~l~~~--~~-------~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~f 794 (903)
+ |++.+++++++. ++ +++++++| ||||.+++ +++|+++|+++|++|++|++|+.. .|
T Consensus 282 ~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p--n~~G~v~d---l~~I~~ia~~~~~~livDeA~~~~~~~ 356 (755)
T 2vyc_A 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC--TYDGVCYN---AKEAQDLLEKTSDRLHFDEAWYGYARF 356 (755)
T ss_dssp BCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS--CTTSEEEC---HHHHHHHHTTTCSEEEEECTTCTTGGG
T ss_pred ccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC--CCCceecC---HHHHHHHHHHcCCEEEEECcCchhccc
Confidence 4 999999998752 21 38999998 59999987 888999999999999999999743 34
Q ss_pred CCC--CCCCCchhhhhhh-hccCCCCCCceEEEccCchhcccccce-eeEEEeCc
Q 043334 795 NYE--GWGGWDLEGCLSK-LYSSTNSSFNVSLLGGLSLKMLTGALK-FGFLVLNH 845 (903)
Q Consensus 795 ~~~--~~s~~s~~~~~~~-l~~~~~~~~~vI~l~S~SK~~g~~GlR-iG~lv~~~ 845 (903)
++. +.+ + +.. ..+.. ..++|++.|+||++ +|.+ .|++++++
T Consensus 357 ~~~~~~~~-----~-~~g~~aD~~--~~~~iv~~S~hK~L--~g~~~g~~i~~~~ 401 (755)
T 2vyc_A 357 NPIYADHY-----A-MRGEPGDHN--GPTVFATHSTHKLL--NALSQASYIHVRE 401 (755)
T ss_dssp CGGGTTSS-----S-SCSCCCCCS--SBEEEEEEETTTSS--SCCTTCEEEEEEC
T ss_pred CcccCCcc-----h-hcCCcCCcc--CCCeEEEECccccc--cCcCCeeeeeecC
Confidence 432 110 1 110 00111 24789999999986 5777 56666643
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-14 Score=153.06 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=126.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++...++. +++++++|+.+..
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~-----------------~~~~~~~d~~~~~ 97 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL-----------------KPRLACQDISNLN 97 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-----------------CCEEECCCGGGCC
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCC-----------------CeEEEecccccCC
Confidence 6789999999999999999887 67999999999999999999866543 6899999998876
Q ss_pred cCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. ++||+|+++. .....++ ......+++++.++|||||.+++
T Consensus 98 ~~--~~fD~v~~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~~ 140 (246)
T 1y8c_A 98 IN--RKFDLITCCLDSTNYIID-----------------------------------SDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CS--CCEEEEEECTTGGGGCCS-----------------------------------HHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cc--CCceEEEEcCccccccCC-----------------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 44 4899999753 2221100 01234789999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecccCCCcccHHHHHHhhh
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGLSGDLPICARTAWAYGK 268 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~~~~~p~~~~~~~~~~~ 268 (903)
.+... ......+....|....-.....|.. . .
T Consensus 141 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--------------------------------~ 172 (246)
T 1y8c_A 141 DINSY---YKLSQVLGNNDFNYDDDEVFYYWEN-------------Q--------------------------------F 172 (246)
T ss_dssp EEECH---HHHHTTTTTCCEEEEETTEEEEEEE-------------E--------------------------------E
T ss_pred EecCH---HHHHhhcCcceEEecCCcEEEEEec-------------c--------------------------------c
Confidence 76542 2211122111111100000000000 0 0
Q ss_pred cCcceeeeeeee-----------eccccCchhHHHHHHHHh-ccccccccccccccccccccccccchHH
Q 043334 269 AGGRISHALSVY-----------SCQLHQPNQVKKIFKFLK-NGFHEISSSLDLSFEDDSVADEKIPFLA 326 (903)
Q Consensus 269 ~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~l~-~g~~~~~~~~d~~~~~~~~~~~~~~~~~ 326 (903)
.+..+.|.++++ +.+..+.+..+++.++|+ +||..++.+.++..++....+.++.+||
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~va 242 (246)
T 1y8c_A 173 EDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLV 242 (246)
T ss_dssp ETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEE
T ss_pred CCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEE
Confidence 011111222111 223345678899999999 9999999999988777666778877765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=158.77 Aligned_cols=141 Identities=21% Similarity=0.254 Sum_probs=104.3
Q ss_pred ccCCcccCc--chh-HHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 3 VIPSIFIPE--DWS-FTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 3 ~~p~vfiP~--~w~-~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
..|++|.+. +.. ..+++.+.. ..+.+|||+|||+|.+++.+++..|+.+|+|+|+|+.|++.|++|+..+++
T Consensus 197 ~~pg~Fs~~~~d~~~~~ll~~l~~-----~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl 271 (375)
T 4dcm_A 197 NHANVFSRTGLDIGARFFMQHLPE-----NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMP 271 (375)
T ss_dssp ECTTCTTCSSCCHHHHHHHHTCCC-----SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCG
T ss_pred eCCCcccCCcccHHHHHHHHhCcc-----cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCC
Confidence 468899884 222 233333322 234799999999999999999998889999999999999999999999886
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
+. ..+++++.+|+.+.... ++||+|++||||........
T Consensus 272 ~~-------------~~~v~~~~~D~~~~~~~--~~fD~Ii~nppfh~~~~~~~-------------------------- 310 (375)
T 4dcm_A 272 EA-------------LDRCEFMINNALSGVEP--FRFNAVLCNPPFHQQHALTD-------------------------- 310 (375)
T ss_dssp GG-------------GGGEEEEECSTTTTCCT--TCEEEEEECCCC-------C--------------------------
T ss_pred Cc-------------CceEEEEechhhccCCC--CCeeEEEECCCcccCcccCH--------------------------
Confidence 20 12589999999886433 38999999999984321100
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcH
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQ 196 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~ 196 (903)
.....+++++.++|||||++++..+.....
T Consensus 311 -------~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~ 340 (375)
T 4dcm_A 311 -------NVAWEMFHHARRCLKINGELYIVANRHLDY 340 (375)
T ss_dssp -------CHHHHHHHHHHHHEEEEEEEEEEEETTSCH
T ss_pred -------HHHHHHHHHHHHhCCCCcEEEEEEECCcCH
Confidence 012268999999999999999977665544
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=6.3e-14 Score=141.27 Aligned_cols=143 Identities=26% Similarity=0.372 Sum_probs=111.9
Q ss_pred ccCCcccCc---chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 3 VIPSIFIPE---DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 3 ~~p~vfiP~---~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
..+++|.|. .+...+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++
T Consensus 27 ~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~ 99 (194)
T 1dus_A 27 TDSGVFSYGKVDKGTKILVENVVV-----DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL 99 (194)
T ss_dssp EETTSTTTTSCCHHHHHHHHHCCC-----CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred eCCCcCCccccchHHHHHHHHccc-----CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 457888887 455555555432 25789999999999999999887 78999999999999999999988776
Q ss_pred ccCCCCcchhhhcccCC-cEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLD-RVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQG 158 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~ 158 (903)
+ . +++++++|+.+... .++||+|++|+||....
T Consensus 100 ~---------------~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~----------------------------- 133 (194)
T 1dus_A 100 D---------------NYDIRVVHSDLYENVK--DRKYNKIITNPPIRAGK----------------------------- 133 (194)
T ss_dssp T---------------TSCEEEEECSTTTTCT--TSCEEEEEECCCSTTCH-----------------------------
T ss_pred C---------------ccceEEEECchhcccc--cCCceEEEECCCcccch-----------------------------
Confidence 2 1 49999999988654 33899999999987310
Q ss_pred cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHC
Q 043334 159 FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERR 206 (903)
Q Consensus 159 ~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~ 206 (903)
+....+++++.++|+|||.+++..........+.+.+++.
T Consensus 134 --------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~ 173 (194)
T 1dus_A 134 --------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV 173 (194)
T ss_dssp --------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence 1123789999999999999999887776666556677665
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-14 Score=142.39 Aligned_cols=117 Identities=20% Similarity=0.246 Sum_probs=93.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+++.+ +..+|+|+|+|+.+++.|++|+..+++ .++++++++|+.+.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 86 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL---------------IDRVTLIKDGHQNM 86 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC---------------GGGEEEECSCGGGG
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCCeEEEECCHHHH
Confidence 57899999999999999999986 456999999999999999999988876 25899999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|+||+...+..... ..+....+++++.++|||||.+++
T Consensus 87 ~~~~~~~fD~v~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 87 DKYIDCPVKAVMFNLGYLPSGDHSIST-----------------------------RPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp GGTCCSCEEEEEEEESBCTTSCTTCBC-----------------------------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhccCCceEEEEcCCcccCccccccc-----------------------------CcccHHHHHHHHHHhCcCCCEEEE
Confidence 533335899999999996543322111 111233689999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 138 ~~ 139 (197)
T 3eey_A 138 VI 139 (197)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-14 Score=148.90 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred chhHHHHHHhhcCCC-CCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhh
Q 043334 12 DWSFTFYEGLNRHPD-SILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~-~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~ 90 (903)
-|...|++.+..... ...++.+|||+|||+|..++.++...|+.+|+|+|+|+.+++.|++|+..+++
T Consensus 61 ~~~~~~~ds~~~l~~~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l----------- 129 (249)
T 3g89_A 61 VVVKHFLDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL----------- 129 (249)
T ss_dssp HHHHHHHHHHGGGGSSCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------
T ss_pred HhhceeeechhhhcccccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------
Confidence 366677776654332 12367899999999999999999988899999999999999999999998887
Q ss_pred hcccCCcEEEEEccccccccC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHH
Q 043334 91 KKTLLDRVEFHESDLLAYCRD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGL 168 (903)
Q Consensus 91 ~~~~~~~v~~~~gDl~~~~~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~ 168 (903)
.+++++++|+.++... ..++||+|+++-- . .
T Consensus 130 -----~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~----~---~----------------------------------- 162 (249)
T 3g89_A 130 -----KGARALWGRAEVLAREAGHREAYARAVARAV----A---P----------------------------------- 162 (249)
T ss_dssp -----SSEEEEECCHHHHTTSTTTTTCEEEEEEESS----C---C-----------------------------------
T ss_pred -----CceEEEECcHHHhhcccccCCCceEEEECCc----C---C-----------------------------------
Confidence 3699999999887642 1248999996410 0 0
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCCcHH--HHHHHHHHCCCeEEEEEe
Q 043334 169 IARAVEEGIGVIKPSGIMIFNMGGRPGQG--VCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 169 ~~~~l~~~~~~LkpgG~ll~~~~~~~~~~--~l~~ll~~~gf~~~~~~~ 215 (903)
+..+++.+.++|||||++++..+.....+ .+.+.++..||...++..
T Consensus 163 ~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~ 211 (249)
T 3g89_A 163 LCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLA 211 (249)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEE
Confidence 22679999999999999999877654333 235667788999877643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=145.17 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=103.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++|+..+++ .++++.++|+.+..
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 122 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALNGI----------------YDIALQKTSLLADV 122 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTC----------------CCCEEEESSTTTTC
T ss_pred CCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC----------------CceEEEeccccccC
Confidence 5789999999999999998874 556999999999999999999988876 34999999998764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. ++||+|++|+|+. .+..+++++.++|+|||.+++.
T Consensus 123 ~---~~fD~i~~~~~~~-----------------------------------------~~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 123 D---GKFDLIVANILAE-----------------------------------------ILLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp C---SCEEEEEEESCHH-----------------------------------------HHHHHGGGSGGGEEEEEEEEEE
T ss_pred C---CCceEEEECCcHH-----------------------------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 2 3899999886542 0236789999999999999997
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.........+.+++++.||+.+.....
T Consensus 159 ~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 159 GIDYLQLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp EEEGGGHHHHHHHHHHTTEEEEEEEEE
T ss_pred ecCcccHHHHHHHHHHcCCceEEeecc
Confidence 555555666788999999999887443
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-16 Score=177.83 Aligned_cols=258 Identities=11% Similarity=0.059 Sum_probs=171.3
Q ss_pred cCCCCCeEEccCCCCC--CC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVDQSF--LP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~--~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..|... ++ .++.+.+++.+.+.+.....+..+....+++.+++.++ .. + .+++++++++++..
T Consensus 96 D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~~~~~~~~~~~Lae~L~~~~p-~~--~-~v~~~nSGseA~~~ 171 (465)
T 2yky_A 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLNLSTQTENEALFAEAVCDRFP-SI--D-LVRFTNSGTEANLM 171 (465)
Confidence 3467789999877653 33 46788888888776532222344556777888877664 22 3 79999999999998
Q ss_pred HHHHhc--cCCCeEEEcCCCcHHHHHHHH----HcCC--EEEEecCCCCCCcccCHHHHHHHhhc--CCCcEEEEECCCC
Q 043334 688 LVLCCI--LEGGTLCFPAGSNGNYVSAAR----FLKA--NIVNIPTESEVGFKMTEKTLVTILET--VKKPWVYISGPTI 757 (903)
Q Consensus 688 ll~~l~--~pGD~Vlv~~P~y~~~~~~~~----~~G~--~vv~v~~~~~~~f~ld~~~L~~~l~~--~~~~~vil~~P~~ 757 (903)
++.... ..++.|++.+++|..+...+. ..|+ .++.+|. -|+++|++.++. ...++|+ +.|.+
T Consensus 172 Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-------~d~~~l~~~l~~~~~~~aavi-~epv~ 243 (465)
T 2yky_A 172 ALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-------NDVEGTADLLKRHGHDCAAIL-VEPML 243 (465)
Confidence 887642 345899999999976554333 1233 2233322 268888888873 2223444 55654
Q ss_pred CCcccCC-CHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 758 NPTGLLY-SNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 758 NPTG~v~-s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
|+||.+. +.+.+++|.++|+++|+++|+||+|. +.++ .. .. ..... ...-+.||||.+|. |+
T Consensus 244 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~~---~a----~~~~g-------v~pDi~t~sK~lg~-G~ 306 (465)
T 2yky_A 244 GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-GG---GA----QEMLG-------ISADLTTLGKYIGG-GM 306 (465)
Confidence 6799654 68899999999999999999999997 5321 11 11 11111 22335599999985 99
Q ss_pred eeeEEEeCcHHHHHHHHh------CC-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 837 KFGFLVLNHPQLVDAFSS------FP-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 837 RiG~lv~~~~~li~~l~~------~~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
|+||++++++ +++.+.. .. .+.+.++++|.++.++|+.-.. +.+.+++.++.+.++++.+.
T Consensus 307 piG~v~~~~~-i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~ 374 (465)
T 2yky_A 307 SFGAFGGRRD-LMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNR 374 (465)
Confidence 9999999987 9888876 12 3667888999999888842111 23445556666666555543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=139.28 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=103.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+++++.|++|++.+++ .++++++++|+.+..
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~---------------~~~v~~~~~d~~~~~ 117 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGL---------------SPRMRAVQGTAPAAL 117 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEESCTTGGG
T ss_pred CCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCEEEEeCchhhhc
Confidence 5789999999999999999987 78999999999999999999988887 248999999998854
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... .+||+|+++... + .. +++++.+.|||||++++.
T Consensus 118 ~~~-~~~D~v~~~~~~----~--------------------------------------~~-~l~~~~~~LkpgG~lv~~ 153 (204)
T 3njr_A 118 ADL-PLPEAVFIGGGG----S--------------------------------------QA-LYDRLWEWLAPGTRIVAN 153 (204)
T ss_dssp TTS-CCCSEEEECSCC----C--------------------------------------HH-HHHHHHHHSCTTCEEEEE
T ss_pred ccC-CCCCEEEECCcc----c--------------------------------------HH-HHHHHHHhcCCCcEEEEE
Confidence 333 379999965311 0 12 688999999999999998
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.........+.+.+++.||++..+..
T Consensus 154 ~~~~~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 154 AVTLESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp ECSHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred ecCcccHHHHHHHHHhCCCcEEEEEe
Confidence 87766667777889999988877643
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=144.38 Aligned_cols=128 Identities=11% Similarity=0.177 Sum_probs=106.9
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.++.+|+|+|||+|++++.+++..+..+|+|+|+++.+++.|++|+..+|++ ++++++++|+++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~---------------~~I~~~~gD~l~ 83 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLT---------------SKIDVRLANGLS 83 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCT---------------TTEEEEECSGGG
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CcEEEEECchhh
Confidence 34688999999999999999999876779999999999999999999999983 689999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...+.. +||+|+. ...|-+++..+++++.+.|+++|.|+
T Consensus 84 ~~~~~~-~~D~Ivi----------------------------------------aGmGg~lI~~IL~~~~~~l~~~~~lI 122 (230)
T 3lec_A 84 AFEEAD-NIDTITI----------------------------------------CGMGGRLIADILNNDIDKLQHVKTLV 122 (230)
T ss_dssp GCCGGG-CCCEEEE----------------------------------------EEECHHHHHHHHHHTGGGGTTCCEEE
T ss_pred cccccc-ccCEEEE----------------------------------------eCCchHHHHHHHHHHHHHhCcCCEEE
Confidence 865432 6999861 11223556689999999999999988
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.-. .+...+++++.+.||.+...
T Consensus 123 lqp~--~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 123 LQPN--NREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp EEES--SCHHHHHHHHHHTTEEEEEE
T ss_pred EECC--CChHHHHHHHHHCCCEEEEE
Confidence 8764 35778889999999998776
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=145.06 Aligned_cols=128 Identities=14% Similarity=0.186 Sum_probs=106.5
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.++.+|||+|||+|.+++.+++..+..+|+|+|+|+.+++.|++|+..+|++ +++++.++|.++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~---------------~~I~v~~gD~l~ 83 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLT---------------EQIDVRKGNGLA 83 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCT---------------TTEEEEECSGGG
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------ceEEEEecchhh
Confidence 34688999999999999999999876779999999999999999999999983 579999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...+. .+||+|+. ...|-+++..+++++.+.|+++|.|+
T Consensus 84 ~~~~~-~~~D~Ivi----------------------------------------agmGg~lI~~IL~~~~~~L~~~~~lI 122 (244)
T 3gnl_A 84 VIEKK-DAIDTIVI----------------------------------------AGMGGTLIRTILEEGAAKLAGVTKLI 122 (244)
T ss_dssp GCCGG-GCCCEEEE----------------------------------------EEECHHHHHHHHHHTGGGGTTCCEEE
T ss_pred ccCcc-ccccEEEE----------------------------------------eCCchHHHHHHHHHHHHHhCCCCEEE
Confidence 86543 15999872 01233556689999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.-. .+...+++++.+.||.+...
T Consensus 123 lq~~--~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 123 LQPN--IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp EEES--SCHHHHHHHHHHHTEEEEEE
T ss_pred EEcC--CChHHHHHHHHHCCCEEEEE
Confidence 8764 46778889999999998665
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=139.28 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=86.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..+++ .++++++++|+.+.
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 106 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKE---------------PEKFEVRKMDANRA 106 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTC---------------GGGEEEEESCHHHH
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHhCC---------------CcceEEEECcHHHH
Confidence 35789999999999999998874 457999999999999999999988876 24799999999885
Q ss_pred ccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH--hhcccCC
Q 043334 109 CRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG--IGVIKPS 183 (903)
Q Consensus 109 ~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~--~~~Lkpg 183 (903)
... ..++||+|++||||.... .. ..++.+ .++|+||
T Consensus 107 ~~~~~~~~~~fD~i~~~~~~~~~~----~~-----------------------------------~~~~~l~~~~~L~~g 147 (187)
T 2fhp_A 107 LEQFYEEKLQFDLVLLDPPYAKQE----IV-----------------------------------SQLEKMLERQLLTNE 147 (187)
T ss_dssp HHHHHHTTCCEEEEEECCCGGGCC----HH-----------------------------------HHHHHHHHTTCEEEE
T ss_pred HHHHHhcCCCCCEEEECCCCCchh----HH-----------------------------------HHHHHHHHhcccCCC
Confidence 431 123899999999976211 00 223333 8899999
Q ss_pred cEEEEEeCCCC
Q 043334 184 GIMIFNMGGRP 194 (903)
Q Consensus 184 G~ll~~~~~~~ 194 (903)
|.+++......
T Consensus 148 G~l~~~~~~~~ 158 (187)
T 2fhp_A 148 AVIVCETDKTV 158 (187)
T ss_dssp EEEEEEEETTC
T ss_pred CEEEEEeCCcc
Confidence 99999876543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=140.62 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=86.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..++++ ++++++++|+.+..
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~d~~~~~ 94 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAE---------------NRFTLLKMEAERAI 94 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCG---------------GGEEEECSCHHHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CceEEEECcHHHhH
Confidence 5789999999999999999887 5579999999999999999999888762 47999999998853
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH--hhcccCCcEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG--IGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~--~~~LkpgG~ll 187 (903)
....++||+|++||||... . ...+++.+ .++|+|||.++
T Consensus 95 ~~~~~~fD~i~~~~~~~~~-----~----------------------------------~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAKE-----T----------------------------------IVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp HHBCSCEEEEEECCSSHHH-----H----------------------------------HHHHHHHHHHTTCEEEEEEEE
T ss_pred HhhcCCCCEEEECCCCCcc-----h----------------------------------HHHHHHHHHhCCCcCCCcEEE
Confidence 3222379999999998520 0 01233344 49999999999
Q ss_pred EEeCCCC
Q 043334 188 FNMGGRP 194 (903)
Q Consensus 188 ~~~~~~~ 194 (903)
+......
T Consensus 136 ~~~~~~~ 142 (177)
T 2esr_A 136 CETDKTV 142 (177)
T ss_dssp EEEETTC
T ss_pred EEECCcc
Confidence 9876543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=143.52 Aligned_cols=127 Identities=12% Similarity=0.133 Sum_probs=101.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++...++.+|+|+|+|+.|++.|++|+..+++ .+++++++|+.++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 133 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL----------------ENTTFCHDRAETFG 133 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC----------------SSEEEEESCHHHHT
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCEEEEeccHHHhc
Confidence 57899999999999999999877788999999999999999999988876 36999999998875
Q ss_pred cC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.. ..++||+|+++.. . .+..+++.+.++|||||.++
T Consensus 134 ~~~~~~~~fD~V~~~~~----~--------------------------------------~~~~~l~~~~~~LkpgG~l~ 171 (240)
T 1xdz_A 134 QRKDVRESYDIVTARAV----A--------------------------------------RLSVLSELCLPLVKKNGLFV 171 (240)
T ss_dssp TCTTTTTCEEEEEEECC----S--------------------------------------CHHHHHHHHGGGEEEEEEEE
T ss_pred ccccccCCccEEEEecc----C--------------------------------------CHHHHHHHHHHhcCCCCEEE
Confidence 32 1348999996420 0 02378999999999999999
Q ss_pred EEeCCCCcHH--HHHHHHHHCCCeEEEEE
Q 043334 188 FNMGGRPGQG--VCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~~~~~~--~l~~ll~~~gf~~~~~~ 214 (903)
+..+.....+ .+.+.+++.||......
T Consensus 172 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~ 200 (240)
T 1xdz_A 172 ALKAASAEEELNAGKKAITTLGGELENIH 200 (240)
T ss_dssp EEECC-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEeCCCchHHHHHHHHHHHHcCCeEeEEE
Confidence 9876654332 34567888999887763
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=165.49 Aligned_cols=176 Identities=9% Similarity=0.067 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH-HHHcCCEEEEecCCCCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA-ARFLKANIVNIPTESEVG 730 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-~~~~G~~vv~v~~~~~~~ 730 (903)
.....+++.+++.+|.+. .+++++|+++++..++.++++|||.|+++.|+|.++... ++..|++++.++... +.
T Consensus 173 ~~i~e~e~~lA~~~gae~----~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~H~S~~~~~~~l~Ga~~v~v~~~~-~~ 247 (730)
T 1c4k_A 173 GPAVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNR-NP 247 (730)
T ss_dssp THHHHHHHHHHHHTTCSE----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEE-CT
T ss_pred HHHHHHHHHHHHHHCCCc----EEEECCHHHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHCCCEEEEEeCCc-cc
Confidence 345677778888888753 499999999999999999999999999999999998887 888999999998753 23
Q ss_pred cc----cCHHHH-----HHHhhcC------C--C-cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCC-
Q 043334 731 FK----MTEKTL-----VTILETV------K--K-PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG- 791 (903)
Q Consensus 731 f~----ld~~~L-----~~~l~~~------~--~-~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~- 791 (903)
|. +|++++ +++++++ + + +++++++| ||||.+++ +++|+++|+++|++||+|++|+.
T Consensus 248 ~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p--n~~G~v~d---l~~I~~la~~~g~~livDeAh~~~ 322 (730)
T 1c4k_A 248 YGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG--TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGY 322 (730)
T ss_dssp TCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB--CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCG
T ss_pred cCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC--CCCCeecC---HHHHHHHHHHcCCeEEEEcccccc
Confidence 33 677777 8888764 3 1 58999998 48999987 88999999999999999999964
Q ss_pred CccCCCCCCCCchhhhhhh-hccCCCCCCceEEEccCchhcccccceee-EEEeCc
Q 043334 792 LEFNYEGWGGWDLEGCLSK-LYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNH 845 (903)
Q Consensus 792 l~f~~~~~s~~s~~~~~~~-l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~ 845 (903)
+.|.+... . . ..+.. ..+.. ..++++++|+||++ +|.+.| +++.++
T Consensus 323 ~~f~~~~~-g--~-~~l~~~~~g~D--~~~~iv~~S~hK~L--~g~~~gg~I~v~~ 370 (730)
T 1c4k_A 323 EQFIPMMR-N--S-SPLLIDDLGPE--DPGIIVVQSVHKQQ--AGFSQTSQIHKKD 370 (730)
T ss_dssp GGSSGGGG-G--G-CTTSCCCCCTT--SCEEEEEECHHHHS--SCCTTCEEEEEEC
T ss_pred cccCcccC-C--c-CcccccccCCC--CCCEEEEECCCCCC--CCCCCEEEEEecc
Confidence 34543110 0 0 00110 00110 13689999999986 577765 554433
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=149.99 Aligned_cols=124 Identities=21% Similarity=0.280 Sum_probs=102.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++..+. +|+|+|+|+.|++.|++|+..|+++ ++++++++|+.++.
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~---------------~~v~~~~~D~~~~~ 188 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVE---------------DRMSAYNMDNRDFP 188 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCT---------------TTEEEECSCTTTCC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCC---------------ceEEEEECCHHHhc
Confidence 5789999999999999999988533 8999999999999999999999872 46999999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|++|||+.. . .+++++.++|||||.+++.
T Consensus 189 ~--~~~fD~Vi~~~p~~~-----------~-------------------------------~~l~~~~~~LkpgG~l~~~ 224 (278)
T 2frn_A 189 G--ENIADRILMGYVVRT-----------H-------------------------------EFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp C--CSCEEEEEECCCSSG-----------G-------------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred c--cCCccEEEECCchhH-----------H-------------------------------HHHHHHHHHCCCCeEEEEE
Confidence 6 348999999999542 0 4578899999999999984
Q ss_pred eCC------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGG------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... ......+.+.+++.||.....
T Consensus 225 ~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 225 NTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 433 334556678899999987663
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-13 Score=141.36 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=102.9
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.+++.|++++... .+++++++|+.+
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------~~~~~~~~d~~~ 103 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN------------------LKVKYIEADYSK 103 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC------------------TTEEEEESCTTT
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC------------------CCEEEEeCchhc
Confidence 45678999999999999999999988899999999999999999887322 279999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... ++||+|+++.+....++ .....+++++.++|||||.++
T Consensus 104 ~~~~--~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~ 145 (234)
T 3dtn_A 104 YDFE--EKYDMVVSALSIHHLED------------------------------------EDKKELYKRSYSILKESGIFI 145 (234)
T ss_dssp CCCC--SCEEEEEEESCGGGSCH------------------------------------HHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCC--CCceEEEEeCccccCCH------------------------------------HHHHHHHHHHHHhcCCCcEEE
Confidence 7655 48999997643332110 112268999999999999999
Q ss_pred EEeCC----------------------------------------CCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 188 FNMGG----------------------------------------RPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 188 ~~~~~----------------------------------------~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
+.... ......+.++++++||+.++.+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 146 NADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYK 214 (234)
T ss_dssp EEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeee
Confidence 85411 113345567899999999887543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=9.5e-13 Score=139.61 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=104.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++..+. +|+|+|+|+.+++.|++++..+++ .++++++++|+.+
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANC---------------ADRVKGITGSMDN 107 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEECCTTS
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCC---------------CCceEEEECChhh
Confidence 346789999999999999999998754 999999999999999999988877 3579999999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++... ++||+|+++...... + ...+++++.++|||||.++
T Consensus 108 ~~~~~-~~fD~v~~~~~l~~~-~--------------------------------------~~~~l~~~~~~L~pgG~l~ 147 (257)
T 3f4k_A 108 LPFQN-EELDLIWSEGAIYNI-G--------------------------------------FERGMNEWSKYLKKGGFIA 147 (257)
T ss_dssp CSSCT-TCEEEEEEESCSCCC-C--------------------------------------HHHHHHHHHTTEEEEEEEE
T ss_pred CCCCC-CCEEEEEecChHhhc-C--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 75433 489999986443321 0 1267999999999999999
Q ss_pred EEeCC--------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGG--------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~--------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+.... ......+.++++++||+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 148 VSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 85421 2234566788999999988763
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=150.43 Aligned_cols=135 Identities=18% Similarity=0.208 Sum_probs=106.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.+++.++... +..+|+|+|+|+.|++.|++|+..+|+ +++++.++|+.+
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~----------------~~i~~~~~D~~~ 265 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL----------------SWIRFLRADARH 265 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC----------------TTCEEEECCGGG
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC----------------CceEEEeCChhh
Confidence 357899999999999999999987 678999999999999999999998887 379999999999
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+..... .||+|++||||...... ......++..+++++.++|||||.++
T Consensus 266 ~~~~~~-~~D~Ii~npPyg~r~~~------------------------------~~~~~~~~~~~~~~~~~~LkpgG~l~ 314 (354)
T 3tma_A 266 LPRFFP-EVDRILANPPHGLRLGR------------------------------KEGLFHLYWDFLRGALALLPPGGRVA 314 (354)
T ss_dssp GGGTCC-CCSEEEECCCSCC----------------------------------CHHHHHHHHHHHHHHHHTSCTTCEEE
T ss_pred CccccC-CCCEEEECCCCcCccCC------------------------------cccHHHHHHHHHHHHHHhcCCCcEEE
Confidence 865543 68999999999742110 01122346689999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+.++.. ...++.++ .||+..+..
T Consensus 315 i~t~~~---~~~~~~~~-~g~~~~~~~ 337 (354)
T 3tma_A 315 LLTLRP---ALLKRALP-PGFALRHAR 337 (354)
T ss_dssp EEESCH---HHHHHHCC-TTEEEEEEE
T ss_pred EEeCCH---HHHHHHhh-cCcEEEEEE
Confidence 987652 33344555 888876653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=139.04 Aligned_cols=130 Identities=18% Similarity=0.179 Sum_probs=104.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++..+++ +++++.++|+.+.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~~~~~~~d~~~~ 100 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL----------------KNVEVLKSEENKI 100 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC----------------TTEEEEECBTTBC
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEecccccC
Confidence 57899999999999999999987 567999999999999999999988776 4799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++-.....++ ...+++++.++|||||.+++
T Consensus 101 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~i 141 (219)
T 3dh0_A 101 PLPD-NTVDFIFMAFTFHELSE--------------------------------------PLKFLEELKRVAKPFAYLAI 141 (219)
T ss_dssp SSCS-SCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CCeeEEEeehhhhhcCC--------------------------------------HHHHHHHHHHHhCCCeEEEE
Confidence 5433 48999997633322111 23789999999999999999
Q ss_pred EeCC------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGG------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.... ......+.+++++.||++++..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 142 IDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp EEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEecccccccCCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 5421 2346777899999999988763
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.4e-13 Score=140.63 Aligned_cols=107 Identities=21% Similarity=0.377 Sum_probs=84.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++..++. +++++++|+.+..
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~-----------------~v~~~~~d~~~~~ 101 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-----------------KIEFLQGDVLEIA 101 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----------------CCEEEESCGGGCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCC-----------------ceEEEECChhhcc
Confidence 5679999999999999999987 67999999999999999999876654 6999999999875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|+++.... .+. ..+....+++++.++|||||.+++.
T Consensus 102 ~~--~~fD~v~~~~~~~-----~~~------------------------------~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 102 FK--NEFDAVTMFFSTI-----MYF------------------------------DEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp CC--SCEEEEEECSSGG-----GGS------------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--CCccEEEEcCCch-----hcC------------------------------CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 43 3899998631111 000 0112347899999999999999997
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
.+.
T Consensus 145 ~~~ 147 (252)
T 1wzn_A 145 FPC 147 (252)
T ss_dssp EEC
T ss_pred ccc
Confidence 654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.6e-13 Score=142.10 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=104.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++...++ .++++++++|+.+
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGL---------------QNRVTGIVGSMDD 107 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEECCTTS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCC---------------CcCcEEEEcChhh
Confidence 346889999999999999999987 677999999999999999999988876 3579999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++... ++||+|+++.+.... + ...+++++.++|||||.++
T Consensus 108 ~~~~~-~~fD~i~~~~~~~~~-~--------------------------------------~~~~l~~~~~~LkpgG~l~ 147 (267)
T 3kkz_A 108 LPFRN-EELDLIWSEGAIYNI-G--------------------------------------FERGLNEWRKYLKKGGYLA 147 (267)
T ss_dssp CCCCT-TCEEEEEESSCGGGT-C--------------------------------------HHHHHHHHGGGEEEEEEEE
T ss_pred CCCCC-CCEEEEEEcCCceec-C--------------------------------------HHHHHHHHHHHcCCCCEEE
Confidence 75433 489999986544321 0 1268999999999999999
Q ss_pred EEeCC--------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGG--------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~--------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+.... ......+.++++++||+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 148 VSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp EEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 85421 1234566788999999988763
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.9e-13 Score=145.58 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=86.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.+| +.+|+|+|+|+.+++.|++++...+ .++++.++|+.+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----------------~~v~~~~~d~~~ 83 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-----------------YDSEFLEGDATE 83 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-----------------SEEEEEESCTTT
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CceEEEEcchhh
Confidence 4678999999999999999999887 4899999999999999999986554 279999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++.+ ++||+|+++......++ ...++++++++|||||.++
T Consensus 84 ~~~~--~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~ 123 (284)
T 3gu3_A 84 IELN--DKYDIAICHAFLLHMTT--------------------------------------PETMLQKMIHSVKKGGKII 123 (284)
T ss_dssp CCCS--SCEEEEEEESCGGGCSS--------------------------------------HHHHHHHHHHTEEEEEEEE
T ss_pred cCcC--CCeeEEEECChhhcCCC--------------------------------------HHHHHHHHHHHcCCCCEEE
Confidence 7653 38999997533221111 1278999999999999999
Q ss_pred EEeCC
Q 043334 188 FNMGG 192 (903)
Q Consensus 188 ~~~~~ 192 (903)
+....
T Consensus 124 ~~~~~ 128 (284)
T 3gu3_A 124 CFEPH 128 (284)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 86543
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-12 Score=157.71 Aligned_cols=198 Identities=11% Similarity=0.094 Sum_probs=139.0
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCccc
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKM 733 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~l 733 (903)
..++++.+++.+|.+. .+++++|++.++..++.++++|||.|+++.++|.++...+...|++++.++.+. +.|.+
T Consensus 197 i~eaE~~lA~~fGa~~----a~~v~nGts~An~~ai~al~~pGD~VLv~r~~H~S~~~~l~lsGa~pv~v~~~~-~~~gi 271 (715)
T 3n75_A 197 HKEAEQYIARVFNADR----SYMVTNGTSTANKIVGMYSAPAGSTILIDRNCHKSLTHLMMMSDVTPIYFRPTR-NAYGI 271 (715)
T ss_dssp HHHHHHHHHHHHTCSE----EEEESSHHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHHHHHSCCEEEEECCCB-CTTCC
T ss_pred HHHHHHHHHHHhCCCC----ceEECcHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHcCCEEEEEeccc-ccccc
Confidence 4567777777888754 488999999999999999999999999999999999999999999999999864 35654
Q ss_pred ---------CHHHHHHHhhcC--CC--cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc-cCCCCC
Q 043334 734 ---------TEKTLVTILETV--KK--PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLE-FNYEGW 799 (903)
Q Consensus 734 ---------d~~~L~~~l~~~--~~--~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~-f~~~~~ 799 (903)
|++.+++++++. ++ +++++++| ||+|.+++ +++|.++|++++ |++||+|+... |.+...
T Consensus 272 ~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p--n~~G~v~d---l~~I~ela~~~~--livDEAH~~~~~f~~~~~ 344 (715)
T 3n75_A 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS--TYDGLLYN---TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYE 344 (715)
T ss_dssp BCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS--CTTSEEEC---HHHHHHHCCCSE--EEEECTTCTTGGGSGGGT
T ss_pred ccCcccccCCHHHHHHHHhhCcCccCceEEEEECC--CCCCccCC---HHHHHHHhCcCc--EEEccccccccccCCccc
Confidence 899999999753 22 27999999 69999998 666777777663 78999997543 443210
Q ss_pred CCCchhhhhhhhccCCCCCCc-eEEEccCchhcccccc-eeeEEEeCcH---HHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFN-VSLLGGLSLKMLTGAL-KFGFLVLNHP---QLVDAFSSFPGLSKPHSTVRYAIKKLL 873 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~-vI~l~S~SK~~g~~Gl-RiG~lv~~~~---~li~~l~~~~~~~~~s~~~Q~aa~~~L 873 (903)
. . ..+. ..... +. +++++|++|+++ |+ -.||+++++. ..++.......+.+++.+.-.+...++
T Consensus 345 ~-~---~al~-~g~~a---D~vii~~~S~hKtL~--gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~ 413 (715)
T 3n75_A 345 G-K---CGMS-GGRVE---GKVIYETQSTHKLLA--AFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAA 413 (715)
T ss_dssp T-S---STTS-SSCCT---TCEEEEEECHHHHSS--CCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHH
T ss_pred c-c---cccc-cCcCC---CEEEEEEeccccccc--CCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 0 0 0011 00001 33 367999999975 54 2478888653 123333334445566666655554444
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=143.17 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=101.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|++++..+++ .+++++.++|+.++
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV---------------SERVHFIHNDAAGY 98 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEESCCTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCC---------------CcceEEEECChHhC
Confidence 467899999999999999999887 67999999999999999999988776 25899999999987
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+. .++||+|+++......++ ...+++++.++|||||.+++
T Consensus 99 ~~--~~~fD~V~~~~~~~~~~~--------------------------------------~~~~l~~~~r~LkpgG~l~~ 138 (256)
T 1nkv_A 99 VA--NEKCDVAACVGATWIAGG--------------------------------------FAGAEELLAQSLKPGGIMLI 138 (256)
T ss_dssp CC--SSCEEEEEEESCGGGTSS--------------------------------------SHHHHHHHTTSEEEEEEEEE
T ss_pred Cc--CCCCCEEEECCChHhcCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 65 348999997422221110 12789999999999999998
Q ss_pred EeCC---------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG---------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~---------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... ......+.+++++.||..+..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 139 GEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred ecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEE
Confidence 5321 113355678899999987665
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.2e-13 Score=143.72 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=103.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ .++++++++|+.+..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 130 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGV---------------SDNMQFIHCAAQDVA 130 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CC---------------GGGEEEEESCGGGTG
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCC---------------CcceEEEEcCHHHhh
Confidence 4679999999999999999987 78999999999999999999987776 258999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+++-.....++ ...+++++.++|||||.+++.
T Consensus 131 ~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 172 (285)
T 4htf_A 131 SHLETPVDLILFHAVLEWVAD--------------------------------------PRSVLQTLWSVLRPGGVLSLM 172 (285)
T ss_dssp GGCSSCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHTEEEEEEEEEE
T ss_pred hhcCCCceEEEECchhhcccC--------------------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 333458999997533321111 127899999999999999985
Q ss_pred eC---------------------------------CCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MG---------------------------------GRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~---------------------------------~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.. .......+.++++++||+++.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~ 232 (285)
T 4htf_A 173 FYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGV 232 (285)
T ss_dssp EEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEEE
T ss_pred EeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeeeE
Confidence 42 1234567788999999999877543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=149.55 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=107.7
Q ss_pred CCCeEEEeCCccCHHHHHHH-HHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIA-EKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la-~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..++ ...++.+|+|+|+|+.+++.|++|+..+++ .++++++++|+.+.
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 182 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL---------------AGQITLHRQDAWKL 182 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT---------------GGGEEEEECCGGGC
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEECchhcC
Confidence 67899999999999999986 456788999999999999999999987776 25799999999997
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... ++||+|++|.++...++. .....+++++.++|||||++++
T Consensus 183 ~~~--~~fD~v~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~~LkpgG~l~i 225 (305)
T 3ocj_A 183 DTR--EGYDLLTSNGLNIYEPDD-----------------------------------ARVTELYRRFWQALKPGGALVT 225 (305)
T ss_dssp CCC--SCEEEEECCSSGGGCCCH-----------------------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred Ccc--CCeEEEEECChhhhcCCH-----------------------------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 654 489999988766643321 1122679999999999999998
Q ss_pred EeCC--------------------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG--------------------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~--------------------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ......+.+++++.||++++...
T Consensus 226 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 226 SFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp ECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred EecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 5521 13466778999999999988743
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=145.25 Aligned_cols=124 Identities=21% Similarity=0.204 Sum_probs=101.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..+++ . +++.++|+.+..
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~--g~~v~gvDi~~~~v~~a~~n~~~~~~----------------~-v~~~~~d~~~~~ 180 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV----------------R-PRFLEGSLEAAL 180 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC----------------C-CEEEESCHHHHG
T ss_pred CCCEEEEecCCCcHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCC----------------c-EEEEECChhhcC
Confidence 6789999999999999998886 34999999999999999999988876 3 899999998854
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|++|++.. .+..+++++.++|||||++++.
T Consensus 181 ~~--~~fD~Vv~n~~~~-----------------------------------------~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 181 PF--GPFDLLVANLYAE-----------------------------------------LHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GG--CCEEEEEEECCHH-----------------------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--CCCCEEEECCcHH-----------------------------------------HHHHHHHHHHHHcCCCCEEEEE
Confidence 32 2899999875421 0226789999999999999996
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.........+.+.+++.||+..+...
T Consensus 218 ~~~~~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 218 GILKDRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred eeccCCHHHHHHHHHHCCCEEEEEec
Confidence 55555667778899999999987744
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=141.83 Aligned_cols=133 Identities=12% Similarity=0.100 Sum_probs=100.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+|+..|+.+|+|+|+|+.|++.|++|+..+++ .++.++++|+.+..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l----------------~nv~~~~~Da~~~l 97 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL----------------SNLRVMCHDAVEVL 97 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC----------------SSEEEECSCHHHHH
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC----------------CcEEEEECCHHHHH
Confidence 46799999999999999999999889999999999999999999988876 47999999998852
Q ss_pred c--CCCCceeEEEEC--CCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 110 R--DHDIQLERIVGC--IPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 110 ~--~~~~~fD~Iv~N--pPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
. ...++||.|++| +||..... ..... . ...+++++.++|||||.
T Consensus 98 ~~~~~~~~~d~v~~~~~~p~~~~~~------~~rr~--------------~------------~~~~l~~~~r~LkpGG~ 145 (218)
T 3dxy_A 98 HKMIPDNSLRMVQLFFPDPWHKARH------NKRRI--------------V------------QVPFAELVKSKLQLGGV 145 (218)
T ss_dssp HHHSCTTCEEEEEEESCCCCCSGGG------GGGSS--------------C------------SHHHHHHHHHHEEEEEE
T ss_pred HHHcCCCChheEEEeCCCCccchhh------hhhhh--------------h------------hHHHHHHHHHHcCCCcE
Confidence 2 123489999998 55542110 00000 0 01589999999999999
Q ss_pred EEEEeCCCCcHHHHHHHHHHC-CCeE
Q 043334 186 MIFNMGGRPGQGVCKRLFERR-GFRV 210 (903)
Q Consensus 186 ll~~~~~~~~~~~l~~ll~~~-gf~~ 210 (903)
+++.+........+.+.+... +|..
T Consensus 146 l~i~td~~~~~~~~~~~~~~~~~~~~ 171 (218)
T 3dxy_A 146 FHMATDWEPYAEHMLEVMSSIDGYKN 171 (218)
T ss_dssp EEEEESCHHHHHHHHHHHHTSTTEEE
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCccc
Confidence 999887654444444555544 4554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=144.95 Aligned_cols=129 Identities=13% Similarity=0.183 Sum_probs=105.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEK-WLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~-~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.+++.+++. .++.+|+++|+++.+++.|++|+..+++ .++++++.+|+.+
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~ 175 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL---------------IERVTIKVRDISE 175 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC---------------GGGEEEECCCGGG
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC---------------CCCEEEEECCHHH
Confidence 46789999999999999999998 4578999999999999999999988775 2479999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... ++||+|++|+|... .+++++.++|+|||.++
T Consensus 176 ~~~~--~~~D~V~~~~~~~~-------------------------------------------~~l~~~~~~L~pgG~l~ 210 (277)
T 1o54_A 176 GFDE--KDVDALFLDVPDPW-------------------------------------------NYIDKCWEALKGGGRFA 210 (277)
T ss_dssp CCSC--CSEEEEEECCSCGG-------------------------------------------GTHHHHHHHEEEEEEEE
T ss_pred cccC--CccCEEEECCcCHH-------------------------------------------HHHHHHHHHcCCCCEEE
Confidence 7332 37999999876330 45888899999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+..+.......+.+.+++.||...+.+...
T Consensus 211 ~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~ 240 (277)
T 1o54_A 211 TVCPTTNQVQETLKKLQELPFIRIEVWESL 240 (277)
T ss_dssp EEESSHHHHHHHHHHHHHSSEEEEEEECCC
T ss_pred EEeCCHHHHHHHHHHHHHCCCceeEEEEEe
Confidence 988765444455677888999988775443
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=149.69 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=101.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCC-cEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLD-RVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~-~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+..++++ + +++++++|+.++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~--ga~V~~VD~s~~al~~a~~n~~~~gl~---------------~~~v~~i~~D~~~~ 215 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLE---------------QAPIRWICEDAMKF 215 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCT---------------TSCEEEECSCHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC---------------ccceEEEECcHHHH
Confidence 4679999999999999999986 459999999999999999999998872 3 499999999887
Q ss_pred ccCC---CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CRDH---DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~~~---~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.... ..+||+|++|||++........ ......+..+++++.++|+|||.
T Consensus 216 l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~----------------------------~~~~~~~~~ll~~~~~~LkpgG~ 267 (332)
T 2igt_A 216 IQREERRGSTYDIILTDPPKFGRGTHGEV----------------------------WQLFDHLPLMLDICREILSPKAL 267 (332)
T ss_dssp HHHHHHHTCCBSEEEECCCSEEECTTCCE----------------------------EEHHHHHHHHHHHHHHTBCTTCC
T ss_pred HHHHHhcCCCceEEEECCccccCCchHHH----------------------------HHHHHHHHHHHHHHHHhcCcCcE
Confidence 5320 2389999999998743321110 01123355889999999999999
Q ss_pred EEEEeCCC--CcHHHHHHHHH----HCCCeEE
Q 043334 186 MIFNMGGR--PGQGVCKRLFE----RRGFRVD 211 (903)
Q Consensus 186 ll~~~~~~--~~~~~l~~ll~----~~gf~~~ 211 (903)
+++..... .....++++++ +.|+++.
T Consensus 268 lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 268 GLVLTAYSIRASFYSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 88765433 23444444444 6777665
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.9e-13 Score=141.99 Aligned_cols=133 Identities=20% Similarity=0.275 Sum_probs=104.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++..|+.+|+|+|+|+.+++.|++++..+++ ++++++++|+.+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~~~~~~~d~~~ 98 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI----------------KNVKFLQANIFS 98 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEECCGGG
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CCcEEEEccccc
Confidence 3468899999999999999999998889999999999999999999988776 479999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++... ++||+|+++......++ ...+++++.++|||||.++
T Consensus 99 ~~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~ 139 (276)
T 3mgg_A 99 LPFED-SSFDHIFVCFVLEHLQS--------------------------------------PEEALKSLKKVLKPGGTIT 139 (276)
T ss_dssp CCSCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred CCCCC-CCeeEEEEechhhhcCC--------------------------------------HHHHHHHHHHHcCCCcEEE
Confidence 76443 48999997643332111 1267999999999999999
Q ss_pred EEeCCC------------------------------CcHHHHHHHHHHCCCeEEEEEe
Q 043334 188 FNMGGR------------------------------PGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 188 ~~~~~~------------------------------~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
+..... .....+.++++++||+.+....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 140 VIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEP 197 (276)
T ss_dssp EEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred EEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEee
Confidence 854210 1123456789999999887743
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-14 Score=147.66 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=91.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHHhc---ccccC-----------CCCcchhhhcc
Q 043334 30 KDKTVAELGCGNGWITIAIAEK--WLPSKVYGLDINPRAIRISWINLYLN---ALDEK-----------GQPIYDAEKKT 93 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~--~~~~~V~giDis~~al~~A~~n~~~~---gl~~~-----------~~~~~~~~~~~ 93 (903)
++.+|||+|||+|.+++.+++. .++.+|+|+|+|+.|++.|++|+..+ +++.. +.+.+ .....
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSY-LEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHH-HHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccc-hhhhh
Confidence 4679999999999999999987 66789999999999999999998766 44100 00000 00000
Q ss_pred cCCcEE-------------EEEccccccccC----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccc
Q 043334 94 LLDRVE-------------FHESDLLAYCRD----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCAL 156 (903)
Q Consensus 94 ~~~~v~-------------~~~gDl~~~~~~----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al 156 (903)
...+++ +.++|+.+.... ...+||+|++||||+.......
T Consensus 130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~----------------------- 186 (250)
T 1o9g_A 130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG----------------------- 186 (250)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS-----------------------
T ss_pred hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc-----------------------
Confidence 000145 999999886421 2237999999999986443211
Q ss_pred cccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 157 QGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 157 ~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
..+.+.+..+++++.++|+|||++++.
T Consensus 187 ------~~~~~~~~~~l~~~~~~LkpgG~l~~~ 213 (250)
T 1o9g_A 187 ------QVPGQPVAGLLRSLASALPAHAVIAVT 213 (250)
T ss_dssp ------CCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred ------cccccHHHHHHHHHHHhcCCCcEEEEe
Confidence 123455678999999999999999984
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=140.09 Aligned_cols=155 Identities=12% Similarity=0.071 Sum_probs=101.0
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhh-
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE- 90 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~- 90 (903)
.....+++.+. +.++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++....... .....
T Consensus 9 ~~l~~~~~~l~-----~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~-----~~~~~~ 76 (203)
T 1pjz_A 9 KDLQQYWSSLN-----VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHI-----TSQGDF 76 (203)
T ss_dssp HHHHHHHHHHC-----CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEE-----EEETTE
T ss_pred HHHHHHHHhcc-----cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCccc-----cccccc
Confidence 34445555443 125789999999999999999997 689999999999999999876421000 00000
Q ss_pred hcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 91 KKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 91 ~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
......+++++++|+.++.....++||+|+++-.+.. +.. +...
T Consensus 77 ~~~~~~~v~~~~~d~~~l~~~~~~~fD~v~~~~~l~~------l~~------------------------------~~~~ 120 (203)
T 1pjz_A 77 KVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIA------LPA------------------------------DMRE 120 (203)
T ss_dssp EEEECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGG------SCH------------------------------HHHH
T ss_pred ccccCCccEEEECccccCCcccCCCEEEEEECcchhh------CCH------------------------------HHHH
Confidence 0000247999999999876432138999996533221 111 1123
Q ss_pred HHHHHHhhcccCCcEEEEE-eCC----------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 171 RAVEEGIGVIKPSGIMIFN-MGG----------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~-~~~----------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.+++++.++|||||++++. ... ....+.+++++.+ ||++.....
T Consensus 121 ~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~-gf~i~~~~~ 175 (203)
T 1pjz_A 121 RYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSG-NWEVTKVGG 175 (203)
T ss_dssp HHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCS-SEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcC-CcEEEEecc
Confidence 6899999999999984442 221 1245666777777 888776643
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=139.90 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=104.1
Q ss_pred cCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcch
Q 043334 9 IPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD 88 (903)
Q Consensus 9 iP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~ 88 (903)
.+......+.+.+.. .++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|++++..+++
T Consensus 21 ~~~~~~~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~--------- 84 (260)
T 1vl5_A 21 AKGSDLAKLMQIAAL-----KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGH--------- 84 (260)
T ss_dssp --CCCHHHHHHHHTC-----CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred cCHHHHHHHHHHhCC-----CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCC---------
Confidence 333344444454432 256899999999999999999874 4999999999999999999987775
Q ss_pred hhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHH
Q 043334 89 AEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGL 168 (903)
Q Consensus 89 ~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~ 168 (903)
+++.++++|+.+++... ++||+|+++-.....++
T Consensus 85 -------~~v~~~~~d~~~l~~~~-~~fD~V~~~~~l~~~~d-------------------------------------- 118 (260)
T 1vl5_A 85 -------QQVEYVQGDAEQMPFTD-ERFHIVTCRIAAHHFPN-------------------------------------- 118 (260)
T ss_dssp -------CSEEEEECCC-CCCSCT-TCEEEEEEESCGGGCSC--------------------------------------
T ss_pred -------CceEEEEecHHhCCCCC-CCEEEEEEhhhhHhcCC--------------------------------------
Confidence 47999999998875443 48999997632221111
Q ss_pred HHHHHHHHhhcccCCcEEEEEeC------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 169 IARAVEEGIGVIKPSGIMIFNMG------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 169 ~~~~l~~~~~~LkpgG~ll~~~~------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
...+++++.++|||||.+++... .......+.+++++.||......
T Consensus 119 ~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 119 PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 22789999999999999998421 11234556778888898876663
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.8e-12 Score=148.24 Aligned_cols=202 Identities=14% Similarity=0.150 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCC-------CCcEEecCchHHHHHHHHHHhcc----
Q 043334 630 PSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDI-------NAEFIYADCSQSLFNKLVLCCIL---- 694 (903)
Q Consensus 630 p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~p-------e~~I~vt~Gs~~al~~ll~~l~~---- 694 (903)
|..+.+.+..++.. |....+..++.+.+.+|+++.+|.+... ....++|+|+++++..++.+..+
T Consensus 92 ~~~~~~~~~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~ 171 (481)
T 4e1o_A 92 PSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKIL 171 (481)
T ss_dssp HHHHHHHHHHHHCCCCSSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHH
Confidence 44455666666644 2233456788999999999999987542 01467788887777666665532
Q ss_pred ---------------CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-----CcEEEEEC
Q 043334 695 ---------------EGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK-----KPWVYISG 754 (903)
Q Consensus 695 ---------------pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-----~~~vil~~ 754 (903)
+++.|+++.++|..+...++..|++++.+|++ +++.+|+++|++++++.+ +.+|+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~~~~~v~~~--~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~ 249 (481)
T 4e1o_A 172 EMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVD--DNFSLRGEALQKAIEEDKQRGLVPVFVCATL 249 (481)
T ss_dssp HHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTCEEEEECCC--TTSCCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred HhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCCceEEEEcC--CCCcCCHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 57799999999999999999999999999986 467899999999987541 24688888
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
++ |+||.+-+ +++|.++|++||+++++|.+|+...+..... ......+.. ...+..+.+|.++.|
T Consensus 250 ~~-t~~G~id~---l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~-----~~~~~gi~~------aDsi~~~~hK~l~~p 314 (481)
T 4e1o_A 250 GT-TGVCAFDC---LSELGPICAREGLWLHIDAAYAGTAFLCPEF-----RGFLKGIEY------ADSFTFNPSKWMMVH 314 (481)
T ss_dssp SC-TTTCCBCC---HHHHHHHHHHHTCEEEEECTTGGGGGGSGGG-----GGGGTTGGG------CSEEEECHHHHSSCC
T ss_pred CC-CCCcCcCC---HHHHHHHHHHcCCeEEeehhhHHHHHhChhh-----HHHhcCccc------CCEEEEChHHhcCCC
Confidence 98 99998855 8999999999999999999997643322211 011111111 245678999998766
Q ss_pred cceeeEEEeCcHHHH
Q 043334 835 ALKFGFLVLNHPQLV 849 (903)
Q Consensus 835 GlRiG~lv~~~~~li 849 (903)
.-+|+++..+..+.
T Consensus 315 -~g~g~l~~~~~~~l 328 (481)
T 4e1o_A 315 -FDCTGFWVKDKYKL 328 (481)
T ss_dssp -SSCEEEEESBHHHH
T ss_pred -CceEEEEEeCHHHH
Confidence 45678887776443
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=138.87 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=101.7
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.|++++..+++ .++++++++|+.+....
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANL---------------NDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEECBTTBCSSC
T ss_pred CEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccc---------------cCceEEEEcCHHHCCCC
Confidence 39999999999999999998 678999999999999999999988776 25899999999886544
Q ss_pred CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeC
Q 043334 112 HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMG 191 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~ 191 (903)
. ++||+|+++......++ ...+++++.++|||||.+++...
T Consensus 109 ~-~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 109 D-NYADLIVSRGSVFFWED--------------------------------------VATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp T-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred c-ccccEEEECchHhhccC--------------------------------------HHHHHHHHHHhCCCCCEEEEEec
Confidence 3 48999998754432211 22689999999999999999642
Q ss_pred CC-----------------------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 192 GR-----------------------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 192 ~~-----------------------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. .....++++++++||+.++..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 150 FGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp CSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred cCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 21 122556788999999887764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=142.51 Aligned_cols=127 Identities=19% Similarity=0.277 Sum_probs=105.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEK-WLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~-~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++. .++.+|+|+|+++++++.|++|+..++++ +++++.++|+.+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~---------------~~v~~~~~d~~~ 156 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD---------------DRVTIKLKDIYE 156 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCT---------------TTEEEECSCGGG
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCC---------------CceEEEECchhh
Confidence 36789999999999999999998 55789999999999999999999888762 469999999997
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... ++||+|++|+|... .+++++.++|+|||.++
T Consensus 157 ~~~~--~~~D~v~~~~~~~~-------------------------------------------~~l~~~~~~L~~gG~l~ 191 (255)
T 3mb5_A 157 GIEE--ENVDHVILDLPQPE-------------------------------------------RVVEHAAKALKPGGFFV 191 (255)
T ss_dssp CCCC--CSEEEEEECSSCGG-------------------------------------------GGHHHHHHHEEEEEEEE
T ss_pred ccCC--CCcCEEEECCCCHH-------------------------------------------HHHHHHHHHcCCCCEEE
Confidence 7443 37999998876320 45888999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCC--CeEEEEEe
Q 043334 188 FNMGGRPGQGVCKRLFERRG--FRVDKLWQ 215 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~g--f~~~~~~~ 215 (903)
+..........+.+.+++.| |...+.+.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~g~~f~~~~~~e 221 (255)
T 3mb5_A 192 AYTPCSNQVMRLHEKLREFKDYFMKPRTIN 221 (255)
T ss_dssp EEESSHHHHHHHHHHHHHTGGGBSCCEEEC
T ss_pred EEECCHHHHHHHHHHHHHcCCCccccEEEE
Confidence 98776655566678899999 98777643
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=142.56 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=109.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++|+..+|+ .+++++++|+.++
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~----------------~~v~~~~~D~~~~ 181 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV----------------LNVILFHSSSLHI 181 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC----------------CSEEEESSCGGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC----------------CeEEEEECChhhc
Confidence 578999999999999999999864 47999999999999999999998887 4799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|++|||+.........+.....+..+. ..........+++++.++|||||++++
T Consensus 182 ~~~-~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~----------------~~~~~~~q~~~L~~~~~~LkpGG~lv~ 244 (315)
T 1ixk_A 182 GEL-NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDD----------------IKFCQGLQMRLLEKGLEVLKPGGILVY 244 (315)
T ss_dssp GGG-CCCEEEEEEECCTTSTTTCC--------CCHHH----------------HHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccc-cccCCEEEEeCCCCCcccccCChhHhhcCCHHH----------------HHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 542 238999999999864332221111000000000 011223446899999999999999999
Q ss_pred EeCC---CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG---RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~---~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+.+ ......+...+++.||+.+.+
T Consensus 245 stcs~~~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 245 STCSLEPEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp EESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred EeCCCChHHhHHHHHHHHhcCCCEEecC
Confidence 6543 345566677888888876544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-13 Score=134.73 Aligned_cols=124 Identities=16% Similarity=0.201 Sum_probs=99.0
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. ++++++++|+.++..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~~ 98 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTH---------------------PSVTFHHGTITDLSD 98 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHC---------------------TTSEEECCCGGGGGG
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC---------------------CCCeEEeCccccccc
Confidence 679999999999999999987 679999999999999999873 478999999998764
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
.. ++||+|+++-.....+. +....+++++.++|||||.+++..
T Consensus 99 ~~-~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 99 SP-KRWAGLLAWYSLIHMGP------------------------------------GELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp SC-CCEEEEEEESSSTTCCT------------------------------------TTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-CCeEEEEehhhHhcCCH------------------------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 43 48999998643332110 012378999999999999999865
Q ss_pred CCC---------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 191 GGR---------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 191 ~~~---------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... .....+++++++.||+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 180 (203)
T 3h2b_A 142 FSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSH 180 (203)
T ss_dssp ECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEE
Confidence 332 246778899999999998874
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=140.84 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=89.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++..+++ .+++++.++|+.++
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 134 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDS---------------PRRKEVRIQGWEEF 134 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCC---------------SSCEEEEECCGGGC
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEECCHHHc
Confidence 4678999999999999999999875 8999999999999999999988876 35899999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.++||+|+++..+...++... ..|.+.+..+++++.++|||||++++
T Consensus 135 ----~~~fD~v~~~~~~~~~~d~~~-----------------------------~~~~~~~~~~l~~~~~~LkpgG~l~i 181 (302)
T 3hem_A 135 ----DEPVDRIVSLGAFEHFADGAG-----------------------------DAGFERYDTFFKKFYNLTPDDGRMLL 181 (302)
T ss_dssp ----CCCCSEEEEESCGGGTTCCSS-----------------------------CCCTTHHHHHHHHHHHSSCTTCEEEE
T ss_pred ----CCCccEEEEcchHHhcCcccc-----------------------------ccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 238999998744433222100 00223345889999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 182 ~~ 183 (302)
T 3hem_A 182 HT 183 (302)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=137.49 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=86.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++.. +..+|+|+|+|++|++.|++|+..++++ .++++++++|+.++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~--------------~~~v~~~~~d~~~~~ 117 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCS--------------SEQAEVINQSSLDFL 117 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCC--------------TTTEEEECSCHHHHT
T ss_pred CCCeEEEcCCccCHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHHhCCC--------------ccceEEEECCHHHHH
Confidence 4679999999999999987776 3469999999999999999999888751 147999999998875
Q ss_pred cC-CCCc-eeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH--hhcccCCcE
Q 043334 110 RD-HDIQ-LERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG--IGVIKPSGI 185 (903)
Q Consensus 110 ~~-~~~~-fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~--~~~LkpgG~ 185 (903)
.. ..++ ||+|++||||.. . . ...+++.+ .++|+|||.
T Consensus 118 ~~~~~~~~fD~I~~~~~~~~-~---~-----------------------------------~~~~l~~~~~~~~LkpgG~ 158 (201)
T 2ift_A 118 KQPQNQPHFDVVFLDPPFHF-N---L-----------------------------------AEQAISLLCENNWLKPNAL 158 (201)
T ss_dssp TSCCSSCCEEEEEECCCSSS-C---H-----------------------------------HHHHHHHHHHTTCEEEEEE
T ss_pred HhhccCCCCCEEEECCCCCC-c---c-----------------------------------HHHHHHHHHhcCccCCCcE
Confidence 43 1347 999999999751 1 0 11345555 678999999
Q ss_pred EEEEeCCCC
Q 043334 186 MIFNMGGRP 194 (903)
Q Consensus 186 ll~~~~~~~ 194 (903)
+++......
T Consensus 159 l~i~~~~~~ 167 (201)
T 2ift_A 159 IYVETEKDK 167 (201)
T ss_dssp EEEEEESSS
T ss_pred EEEEECCCC
Confidence 999776543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.43 E-value=9.3e-13 Score=137.19 Aligned_cols=138 Identities=21% Similarity=0.257 Sum_probs=106.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++. .....++++.++|+.+..
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~ 96 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLN-----------QKTGGKAEFKVENASSLS 96 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCC-----------SSSSCEEEEEECCTTSCC
T ss_pred CCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCc-----------cccCcceEEEEecccccC
Confidence 6789999999999999999987 679999999999999999998766652 111247999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++..+...++ ......+++++.++|||||.+++.
T Consensus 97 ~~~-~~~D~v~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 97 FHD-SSFDFAVMQAFLTSVPD-----------------------------------PKERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp SCT-TCEEEEEEESCGGGCCC-----------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CceeEEEEcchhhcCCC-----------------------------------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 433 48999998644443221 111237899999999999999985
Q ss_pred eC----------------------------------------CCCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MG----------------------------------------GRPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~----------------------------------------~~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.. .......++++++++||+++.+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 141 EFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred ECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 32 1235677789999999999887543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=147.66 Aligned_cols=136 Identities=13% Similarity=0.117 Sum_probs=100.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||||.+++.+++. +.+|+|+|+|+.|++.|++|+..|+++ ..+.++|+.++.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~-----------------~~~~~~D~~~~l 274 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLR-----------------VDIRHGEALPTL 274 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-----------------CEEEESCHHHHH
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCC-----------------CcEEEccHHHHH
Confidence 4889999999999999999986 567999999999999999999999872 346699998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....+.||+|++|||++...... . ......+..+++.+.++|+|||.+++.
T Consensus 275 ~~~~~~fD~Ii~dpP~f~~~~~~-~----------------------------~~~~~~~~~ll~~a~~~LkpGG~Lv~~ 325 (393)
T 4dmg_A 275 RGLEGPFHHVLLDPPTLVKRPEE-L----------------------------PAMKRHLVDLVREALRLLAEEGFLWLS 325 (393)
T ss_dssp HTCCCCEEEEEECCCCCCSSGGG-H----------------------------HHHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHhcCCCCEEEECCCcCCCCHHH-H----------------------------HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 44333599999999997543221 1 112234668999999999999999964
Q ss_pred eC-CCCcHH----HHHHHHHHCCCeEEEE
Q 043334 190 MG-GRPGQG----VCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~-~~~~~~----~l~~ll~~~gf~~~~~ 213 (903)
.. ...... .+.+.+.+.|.....+
T Consensus 326 s~s~~~~~~~f~~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 326 SCSYHLRLEDLLEVARRAAADLGRRLRVH 354 (393)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCeEEEE
Confidence 43 333333 3344555666554333
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=129.25 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=101.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. .+++++++|+.+..
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 102 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF---------------------PEARWVVGDLSVDQ 102 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCTTTSC
T ss_pred CCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC---------------------CCCcEEEcccccCC
Confidence 6789999999999999999987 679999999999999999875 36889999998864
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++++.+.. +. .+....+++++.++|+|||.+++.
T Consensus 103 ~~~-~~~D~i~~~~~~~~~-----~~------------------------------~~~~~~~l~~~~~~l~~~G~l~~~ 146 (195)
T 3cgg_A 103 ISE-TDFDLIVSAGNVMGF-----LA------------------------------EDGREPALANIHRALGADGRAVIG 146 (195)
T ss_dssp CCC-CCEEEEEECCCCGGG-----SC------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CceeEEEECCcHHhh-----cC------------------------------hHHHHHHHHHHHHHhCCCCEEEEE
Confidence 432 489999987554421 10 011237899999999999999997
Q ss_pred eCCC--CcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGGR--PGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~~--~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
.+.. .....+.+++++.||.+......
T Consensus 147 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 147 FGAGRGWVFGDFLEVAERVGLELENAFES 175 (195)
T ss_dssp EETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred eCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence 6543 35677788999999999887544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=137.44 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=103.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .+++++.++|+.+.
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 123 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGL---------------ANRVTFSYADAMDL 123 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEECCTTSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCC---------------CcceEEEECccccC
Confidence 367899999999999999999876 68999999999999999999987776 35799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|+++-.....++ ...+++++.++|||||.+++
T Consensus 124 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 124 PFED-ASFDAVWALESLHHMPD--------------------------------------RGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp CSCT-TCEEEEEEESCTTTSSC--------------------------------------HHHHHHHHHTTEEEEEEEEE
T ss_pred CCCC-CCccEEEEechhhhCCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 5433 48999997644432211 12789999999999999998
Q ss_pred EeC------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMG------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... .......+.+++++.||+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 214 (273)
T 3bus_A 165 ADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTV 214 (273)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 431 12234566788999999987764
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-13 Score=136.29 Aligned_cols=80 Identities=9% Similarity=0.071 Sum_probs=68.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.|++|+..+++ ++++++++|+.+..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~~~~~----------------~~v~~~~~D~~~~~ 116 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLATLKA----------------GNARVVNSNAMSFL 116 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTC----------------CSEEEECSCHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEECCHHHHH
Confidence 46899999999999999877763 35999999999999999999988876 48999999998864
Q ss_pred cCCCCceeEEEECCCCC
Q 043334 110 RDHDIQLERIVGCIPQI 126 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~ 126 (903)
....++||+|++||||.
T Consensus 117 ~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 117 AQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp SSCCCCEEEEEECCSSS
T ss_pred hhcCCCCCEEEECCCCC
Confidence 43334899999999976
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-12 Score=131.20 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=96.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..+++ +++++++|+.++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------------~~~~~~~d~~~~ 109 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-----------------KFKVFIGDVSEF 109 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT-----------------SEEEEESCGGGC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCC-----------------CEEEEECchHHc
Confidence 46789999999999999999886 345899999999999999999876654 699999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. . +||+|++||||....... ...+++++.+.+ ||.+++
T Consensus 110 ~--~--~~D~v~~~~p~~~~~~~~------------------------------------~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 110 N--S--RVDIVIMNPPFGSQRKHA------------------------------------DRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp C--C--CCSEEEECCCCSSSSTTT------------------------------------THHHHHHHHHHC--SEEEEE
T ss_pred C--C--CCCEEEEcCCCccccCCc------------------------------------hHHHHHHHHHhc--CcEEEE
Confidence 3 2 799999999998543210 015677787877 555544
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
..........+.+.+.+.||+...+..
T Consensus 148 ~~~~~~~~~~~~~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 148 HLAKPEVRRFIEKFSWEHGFVVTHRLT 174 (207)
T ss_dssp EECCHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EeCCcCCHHHHHHHHHHCCCeEEEEEE
Confidence 433444455567788999998766543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=146.93 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=103.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.++...+..+|+|+|+|+.|++.|++|+..+|++ +++++.++|+.+..
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~---------------~~i~~~~~D~~~~~ 281 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVL---------------DKIKFIQGDATQLS 281 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCG---------------GGCEEEECCGGGGG
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCC---------------CceEEEECChhhCC
Confidence 678999999999999999998854459999999999999999999988872 57999999999986
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|++||||....... ....+++..+++++.++| +|.+++.
T Consensus 282 ~~~-~~fD~Ii~npPyg~r~~~~------------------------------~~~~~ly~~~~~~l~r~l--~g~~~~i 328 (373)
T 3tm4_A 282 QYV-DSVDFAISNLPYGLKIGKK------------------------------SMIPDLYMKFFNELAKVL--EKRGVFI 328 (373)
T ss_dssp GTC-SCEEEEEEECCCC------------------------------------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred ccc-CCcCEEEECCCCCcccCcc------------------------------hhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence 543 3899999999997432100 011234568899999988 5665655
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.+. ...+++.+.+.||+..+..
T Consensus 329 ~~~---~~~~~~~~~~~G~~~~~~~ 350 (373)
T 3tm4_A 329 TTE---KKAIEEAIAENGFEIIHHR 350 (373)
T ss_dssp ESC---HHHHHHHHHHTTEEEEEEE
T ss_pred ECC---HHHHHHHHHHcCCEEEEEE
Confidence 543 3555678889999987653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.7e-13 Score=159.50 Aligned_cols=141 Identities=16% Similarity=0.111 Sum_probs=107.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||||.+++.++.. +..+|+++|+|+.+++.|++|+..|+++ .++++++++|+.++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~~ngl~--------------~~~v~~i~~D~~~~l 603 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLRLNGLT--------------GRAHRLIQADCLAWL 603 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCC--------------STTEEEEESCHHHHH
T ss_pred CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC--------------ccceEEEecCHHHHH
Confidence 5789999999999999998874 3457999999999999999999999872 147999999999865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|++|||++....... . ...+...+..+++.+.++|+|||++++.
T Consensus 604 ~~~~~~fD~Ii~DPP~f~~~~~~~------~---------------------~~~~~~~~~~ll~~a~~~LkpgG~L~~s 656 (703)
T 3v97_A 604 REANEQFDLIFIDPPTFSNSKRME------D---------------------AFDVQRDHLALMKDLKRLLRAGGTIMFS 656 (703)
T ss_dssp HHCCCCEEEEEECCCSBC----------------------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhcCCCccEEEECCccccCCccch------h---------------------HHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 443458999999999985432110 0 0123345678999999999999999998
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
++....... .+.+.+.||+...+
T Consensus 657 ~~~~~~~~~-~~~l~~~g~~~~~i 679 (703)
T 3v97_A 657 NNKRGFRMD-LDGLAKLGLKAQEI 679 (703)
T ss_dssp ECCTTCCCC-HHHHHHTTEEEEEC
T ss_pred ECCcccccC-HHHHHHcCCceeee
Confidence 876332222 35678889876555
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-12 Score=150.82 Aligned_cols=263 Identities=11% Similarity=0.064 Sum_probs=166.1
Q ss_pred CCCCCeEEccCCCCC--CC-CcHHHHHHHHHHHHc----cCCCCC---chHHHHHHHHHHHhhcCCCCCCCCcEEecCch
Q 043334 612 TPNSGLIHMDVDQSF--LP-IPSLVKAAIFESFAR----QNMSES---EIDVTPSIQQYIKSNFGFPIDINAEFIYADCS 681 (903)
Q Consensus 612 ~~~~~~IdLs~g~p~--~~-~p~~v~~al~~al~~----y~~~~G---~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs 681 (903)
..|...||+..|... ++ .++.+.+++.+.+.. +....| ..++++++++.+.+.++... + +|++++|+
T Consensus 60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~--~-~v~f~~sG 136 (472)
T 1ohv_A 60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM--S-QLITMACG 136 (472)
T ss_dssp TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTC--C-EEEEESSH
T ss_pred CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCc--C-EEEEeCCc
Confidence 467789999766532 34 578899988776432 222233 56788888888877654433 3 89999999
Q ss_pred HHHHHHHHHHhc-------c------------------CC---CeEEEcCCCcHHHHHHH-HHcCCE-------------
Q 043334 682 QSLFNKLVLCCI-------L------------------EG---GTLCFPAGSNGNYVSAA-RFLKAN------------- 719 (903)
Q Consensus 682 ~~al~~ll~~l~-------~------------------pG---D~Vlv~~P~y~~~~~~~-~~~G~~------------- 719 (903)
++++..++..+. . || +.|++.+++|..+...+ ...|..
T Consensus 137 seA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~ 216 (472)
T 1ohv_A 137 SCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWP 216 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCc
Confidence 999999988763 1 46 89999999997755544 333321
Q ss_pred EEEecCCC---CCC--c-----ccCHHHHHHHhhc------CCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcE
Q 043334 720 IVNIPTES---EVG--F-----KMTEKTLVTILET------VKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGAR 782 (903)
Q Consensus 720 vv~v~~~~---~~~--f-----~ld~~~L~~~l~~------~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~ 782 (903)
.+++|... ... + ..|+++|++.+++ ++ .++++.|.+|+||. +.+.+.+++|.++|+++|++
T Consensus 217 ~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~--~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~l 294 (472)
T 1ohv_A 217 IAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTV--AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCA 294 (472)
T ss_dssp EECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCE--EEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCE
T ss_pred ccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCE--EEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCE
Confidence 11232110 000 1 1267889988875 33 34455554588996 57899999999999999999
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCC
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSK 860 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~ 860 (903)
+|+||+|.++.+.+.. +. ...++-. ..+-+.||||.+ ++| ||++ ++. +. .+.... .+.+
T Consensus 295 li~DEv~~g~g~~g~~---~~----~~~~gv~-----~~~Di~t~sK~~-l~G---G~~~-~~~-~~-~~~~~~~~~T~~ 355 (472)
T 1ohv_A 295 FLVDEVQTGGGSTGKF---WA----HEHWGLD-----DPADVMTFSKKM-MTG---GFFH-KEE-FR-PNAPYRIFNTWL 355 (472)
T ss_dssp EEEECTTTTTTTTSSS---SG----GGGGCCS-----SCCSEEEECGGG-SSE---EEEE-CGG-GS-CSSSSSSCCSSS
T ss_pred EEEeCcccCCCCCCCc---hh----ccccCCC-----CCCCEEEEcccc-ccC---CccC-chh-hc-ccccccccCccC
Confidence 9999999875554432 11 1111110 002245899995 446 7777 544 42 122221 2556
Q ss_pred CcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 861 PHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 861 ~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
.+.++|.++.++|+.-.. +.+.+++.++++.++++.+.
T Consensus 356 ~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~ 393 (472)
T 1ohv_A 356 GDPSKNLLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLD 393 (472)
T ss_dssp SCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH
Confidence 788999999888842111 23455666666666665543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=138.43 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=105.0
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccC
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLL 95 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~ 95 (903)
.++..+........++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|++++..++.
T Consensus 65 ~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---------------- 127 (241)
T 2ex4_A 65 KFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK---------------- 127 (241)
T ss_dssp HHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGG----------------
T ss_pred HHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCC----------------
Confidence 3444444332212357899999999999999988875 56999999999999999999865532
Q ss_pred CcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHH
Q 043334 96 DRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 175 (903)
Q Consensus 96 ~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~ 175 (903)
.+++++++|+.++.... ++||+|+++-... .+. ...+..++++
T Consensus 128 ~~~~~~~~d~~~~~~~~-~~fD~v~~~~~l~------~~~------------------------------~~~~~~~l~~ 170 (241)
T 2ex4_A 128 RVRNYFCCGLQDFTPEP-DSYDVIWIQWVIG------HLT------------------------------DQHLAEFLRR 170 (241)
T ss_dssp GEEEEEECCGGGCCCCS-SCEEEEEEESCGG------GSC------------------------------HHHHHHHHHH
T ss_pred ceEEEEEcChhhcCCCC-CCEEEEEEcchhh------hCC------------------------------HHHHHHHHHH
Confidence 36999999998876443 3899999752211 111 0113378999
Q ss_pred HhhcccCCcEEEEEeCCC--------------CcHHHHHHHHHHCCCeEEEEEe
Q 043334 176 GIGVIKPSGIMIFNMGGR--------------PGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 176 ~~~~LkpgG~ll~~~~~~--------------~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
+.++|||||.+++..... .....+++++++.||+++....
T Consensus 171 ~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 171 CKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp HHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 999999999999843211 1467778999999999988743
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=135.87 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=102.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+. ..+++++++|+.++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 128 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSSPK---------------AEYFSFVKEDVFTWR 128 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTSGG---------------GGGEEEECCCTTTCC
T ss_pred CCCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhccCC---------------CcceEEEECchhcCC
Confidence 4469999999999999998864 78999999999999999999865443 257999999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... +||+|+++..+...+. +....+++++.++|||||.+++.
T Consensus 129 ~~~--~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~~ 170 (235)
T 3lcc_A 129 PTE--LFDLIFDYVFFCAIEP------------------------------------EMRPAWAKSMYELLKPDGELITL 170 (235)
T ss_dssp CSS--CEEEEEEESSTTTSCG------------------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC--CeeEEEEChhhhcCCH------------------------------------HHHHHHHHHHHHHCCCCcEEEEE
Confidence 433 8999998644442210 01237899999999999999984
Q ss_pred eCC----------CCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGG----------RPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~----------~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
... ......+.+++++.||+++.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 171 MYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp ECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred EecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 432 135677789999999999887443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=140.38 Aligned_cols=131 Identities=14% Similarity=0.115 Sum_probs=103.6
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++.+ +.+|+|+|+++.+++.|++++..+++ .++++++++|+.+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~ 178 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRI---------------DDHVRSRVCNMLD 178 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEECCTTS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCceEEEECChhc
Confidence 4568899999999999999999986 67999999999999999999988887 3589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.+... ++||+|+++-..... + ...+++++.++|||||+++
T Consensus 179 ~~~~~-~~fD~V~~~~~l~~~------------------------------------~---~~~~l~~~~~~LkpgG~l~ 218 (312)
T 3vc1_A 179 TPFDK-GAVTASWNNESTMYV------------------------------------D---LHDLFSEHSRFLKVGGRYV 218 (312)
T ss_dssp CCCCT-TCEEEEEEESCGGGS------------------------------------C---HHHHHHHHHHHEEEEEEEE
T ss_pred CCCCC-CCEeEEEECCchhhC------------------------------------C---HHHHHHHHHHHcCCCcEEE
Confidence 75433 489999964222110 0 2378999999999999999
Q ss_pred EEeC---C-------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMG---G-------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~---~-------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+... . ......+.+++++.||+++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 219 TITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp EEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred EEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 8432 1 1234566788999999988774
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-13 Score=146.84 Aligned_cols=162 Identities=20% Similarity=0.309 Sum_probs=103.3
Q ss_pred hcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCC----------------
Q 043334 22 NRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQP---------------- 85 (903)
Q Consensus 22 ~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~---------------- 85 (903)
..+....+++++|||+|||+|.+++.+++.+++.+|+|+|+|+.|++.|++++...+......+
T Consensus 38 ~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (292)
T 3g07_A 38 RVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGT 117 (292)
T ss_dssp GTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC---------------------------
T ss_pred HhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccc
Confidence 3344444578999999999999999999999889999999999999999998765543100000
Q ss_pred --------------------------cchhhhcccCCcEEEEEccccccc----cCCCCceeEEEECCCCCCCCCccchh
Q 043334 86 --------------------------IYDAEKKTLLDRVEFHESDLLAYC----RDHDIQLERIVGCIPQILNPNPDAMS 135 (903)
Q Consensus 86 --------------------------~~~~~~~~~~~~v~~~~gDl~~~~----~~~~~~fD~Iv~NpPy~~~~~~~~l~ 135 (903)
........+..+++|.++|+.... ....++||+|+++-..
T Consensus 118 ~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl---------- 187 (292)
T 3g07_A 118 TTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT---------- 187 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH----------
T ss_pred ccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH----------
Confidence 000001123368999999997643 1123489999963111
Q ss_pred hHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCC---------------------
Q 043334 136 KIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRP--------------------- 194 (903)
Q Consensus 136 ~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~--------------------- 194 (903)
.-++ -..+.+...+++++++++|||||++++......
T Consensus 188 ~~ih----------------------l~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~ 245 (292)
T 3g07_A 188 KWVH----------------------LNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL 245 (292)
T ss_dssp HHHH----------------------HHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCC
T ss_pred HHhh----------------------hcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEE
Confidence 0000 011223355899999999999999999643210
Q ss_pred cHHHHHHHHHH--CCCeEEEEEe
Q 043334 195 GQGVCKRLFER--RGFRVDKLWQ 215 (903)
Q Consensus 195 ~~~~l~~ll~~--~gf~~~~~~~ 215 (903)
....+..++.+ .||+.++...
T Consensus 246 ~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 246 KPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp CGGGHHHHHTSTTTCCCEEEEC-
T ss_pred cHHHHHHHHHhcCCCceEEEEec
Confidence 12234567777 8898777643
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=8e-13 Score=147.31 Aligned_cols=135 Identities=17% Similarity=0.240 Sum_probs=103.4
Q ss_pred ccCCcccCcc---hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 3 VIPSIFIPED---WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 3 ~~p~vfiP~~---w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
..|++|.+.. .+..+++.+... .+.+|||+|||+|.+++.+++..+..+|+|+|+|+.|++.|++|+..+++
T Consensus 171 ~~~gvf~~~~~d~~~~~ll~~l~~~-----~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~ 245 (343)
T 2pjd_A 171 TLPGVFSRDGLDVGSQLLLSTLTPH-----TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV 245 (343)
T ss_dssp ECTTCTTSSSCCHHHHHHHHHSCTT-----CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC
T ss_pred ecCCccCCCCCcHHHHHHHHhcCcC-----CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC
Confidence 4688888752 344444444321 35689999999999999999998778999999999999999999988876
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
++.++.+|+.+.. .++||+|++||||..... .
T Consensus 246 -----------------~~~~~~~d~~~~~---~~~fD~Iv~~~~~~~g~~---~------------------------- 277 (343)
T 2pjd_A 246 -----------------EGEVFASNVFSEV---KGRFDMIISNPPFHDGMQ---T------------------------- 277 (343)
T ss_dssp -----------------CCEEEECSTTTTC---CSCEEEEEECCCCCSSSH---H-------------------------
T ss_pred -----------------CCEEEEccccccc---cCCeeEEEECCCcccCcc---C-------------------------
Confidence 4677899998764 238999999999874210 0
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCc
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPG 195 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~ 195 (903)
.......+++++.++|||||.+++..+....
T Consensus 278 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 308 (343)
T 2pjd_A 278 -----SLDAAQTLIRGAVRHLNSGGELRIVANAFLP 308 (343)
T ss_dssp -----HHHHHHHHHHHHGGGEEEEEEEEEEEETTSS
T ss_pred -----CHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC
Confidence 0112348899999999999999997765443
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.3e-13 Score=132.09 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=83.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..+++ +++++++|+.+..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----------------~~~~~~~d~~~~~ 101 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGL-----------------GARVVALPVEVFL 101 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTC-----------------CCEEECSCHHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHcCC-----------------ceEEEeccHHHHH
Confidence 4689999999999999999987 45699999999999999999977654 6899999998753
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH--hhcccCCc
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG--IGVIKPSG 184 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~--~~~LkpgG 184 (903)
.. ..++||+|++||||. .... .+++.+ .++|+|||
T Consensus 102 ~~~~~~~~~~D~i~~~~~~~--~~~~--------------------------------------~~~~~~~~~~~L~~gG 141 (171)
T 1ws6_A 102 PEAKAQGERFTVAFMAPPYA--MDLA--------------------------------------ALFGELLASGLVEAGG 141 (171)
T ss_dssp HHHHHTTCCEEEEEECCCTT--SCTT--------------------------------------HHHHHHHHHTCEEEEE
T ss_pred HhhhccCCceEEEEECCCCc--hhHH--------------------------------------HHHHHHHhhcccCCCc
Confidence 21 123799999999987 2110 123333 59999999
Q ss_pred EEEEEeCCCC
Q 043334 185 IMIFNMGGRP 194 (903)
Q Consensus 185 ~ll~~~~~~~ 194 (903)
.+++.+....
T Consensus 142 ~~~~~~~~~~ 151 (171)
T 1ws6_A 142 LYVLQHPKDL 151 (171)
T ss_dssp EEEEEEETTS
T ss_pred EEEEEeCCcc
Confidence 9999876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-12 Score=132.76 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=98.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. ++.+.++|+.+..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~----------------------~~~~~~~d~~~~~ 98 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL----------------------GRPVRTMLFHQLD 98 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH----------------------TSCCEECCGGGCC
T ss_pred CCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc----------------------CCceEEeeeccCC
Confidence 5789999999999999999987 679999999999999999886 3567889998876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
..++||+|+++......+ .+....+++++.++|||||.+++.
T Consensus 99 --~~~~fD~v~~~~~l~~~~------------------------------------~~~~~~~l~~~~~~LkpgG~l~~~ 140 (211)
T 3e23_A 99 --AIDAYDAVWAHACLLHVP------------------------------------RDELADVLKLIWRALKPGGLFYAS 140 (211)
T ss_dssp --CCSCEEEEEECSCGGGSC------------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCCcEEEEEecCchhhcC------------------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 334899999764333111 112347899999999999999996
Q ss_pred eCCC--------------CcHHHHHHHHHHCC-CeEEEEEe
Q 043334 190 MGGR--------------PGQGVCKRLFERRG-FRVDKLWQ 215 (903)
Q Consensus 190 ~~~~--------------~~~~~l~~ll~~~g-f~~~~~~~ 215 (903)
.... .....+++++++.| |+++....
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 141 YKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVES 181 (211)
T ss_dssp EECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEE
T ss_pred EcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEEe
Confidence 4422 36677889999999 99988754
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=146.28 Aligned_cols=136 Identities=15% Similarity=0.168 Sum_probs=101.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCC-cEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLD-RVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~-~v~~~~gDl~~~ 108 (903)
++++|||+|||+|.+++.+|+. +..+|+|+|+|+.|++.|++|+..|+++ + +++++++|+.+.
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~-ga~~V~~vD~s~~al~~A~~N~~~n~~~---------------~~~v~~~~~D~~~~ 275 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLD---------------MANHQLVVMDVFDY 275 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCC---------------CTTEEEEESCHHHH
T ss_pred CCCeEEEEeeccCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCC---------------ccceEEEECCHHHH
Confidence 5789999999999999999975 3459999999999999999999999872 3 799999999875
Q ss_pred ccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
... .+.+||+|++|||++...... .......+..+++.+.+.|+|||.
T Consensus 276 l~~~~~~~~~fD~Ii~DPP~~~~~~~~-----------------------------~~~~~~~~~~ll~~~~~~L~pgG~ 326 (385)
T 2b78_A 276 FKYARRHHLTYDIIIIDPPSFARNKKE-----------------------------VFSVSKDYHKLIRQGLEILSENGL 326 (385)
T ss_dssp HHHHHHTTCCEEEEEECCCCC-----C-----------------------------CCCHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhCCCccEEEECCCCCCCChhh-----------------------------HHHHHHHHHHHHHHHHHhcCCCcE
Confidence 431 123899999999997432110 012233466889999999999999
Q ss_pred EEEEeCCCC-cHH----HHHHHHHHCCCeE
Q 043334 186 MIFNMGGRP-GQG----VCKRLFERRGFRV 210 (903)
Q Consensus 186 ll~~~~~~~-~~~----~l~~ll~~~gf~~ 210 (903)
+++...... ... .+++.+.+.|...
T Consensus 327 l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 356 (385)
T 2b78_A 327 IIASTNAANMTVSQFKKQIEKGFGKQKHTY 356 (385)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHcCCcE
Confidence 999876543 223 2334455667773
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-12 Score=141.34 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=89.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++..++.+|+|+|+|+.|++.|++|++.|++ .++.++++|+.+.
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l----------------~~~~~~~~d~~~~ 181 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL----------------NNVIPILADNRDV 181 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC----------------SSEEEEESCGGGC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCEEEEECChHHc
Confidence 367899999999999999999987777999999999999999999999987 4789999999988
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. .++||+|++|||+. . ..+++++.+.|+|||.+++
T Consensus 182 -~~-~~~~D~Vi~d~p~~-------~-----------------------------------~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 182 -EL-KDVADRVIMGYVHK-------T-----------------------------------HKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp -CC-TTCEEEEEECCCSS-------G-----------------------------------GGGHHHHHHHEEEEEEEEE
T ss_pred -Cc-cCCceEEEECCccc-------H-----------------------------------HHHHHHHHHHcCCCCEEEE
Confidence 33 34899999999971 1 0457888899999999998
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
....
T Consensus 218 s~~~ 221 (272)
T 3a27_A 218 HETV 221 (272)
T ss_dssp EEEE
T ss_pred EEcC
Confidence 6553
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=149.99 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=118.1
Q ss_pred cccCCcccCc--chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 2 MVIPSIFIPE--DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 2 ~~~p~vfiP~--~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
.+.|+.|++. ..+..+++.+..... ..++.+|||+|||+|.+++.+++. +.+|+|+|+|++|++.|++|+..+++
T Consensus 257 ~~~~~~f~q~n~~~~e~l~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~ 333 (433)
T 1uwv_A 257 TFSPRDFIQVNAGVNQKMVARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGL 333 (433)
T ss_dssp ECCSSSCCCSBHHHHHHHHHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EECcccccccCHHHHHHHHHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 4688999983 334444444322111 135679999999999999999987 68999999999999999999999887
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCAL 156 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al 156 (903)
.+++|+++|+.+.... ..++||+|++|||+....
T Consensus 334 ----------------~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~~--------------------------- 370 (433)
T 1uwv_A 334 ----------------QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA--------------------------- 370 (433)
T ss_dssp ----------------CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH---------------------------
T ss_pred ----------------CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccHH---------------------------
Confidence 4899999999885321 123799999999998421
Q ss_pred cccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceee
Q 043334 157 QGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALV 236 (903)
Q Consensus 157 ~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 236 (903)
.+++.+ ..++|++++++.+........+ ..+.+.||....+... ..|..+..++.++
T Consensus 371 --------------~~~~~l-~~~~p~~ivyvsc~p~tlard~-~~l~~~Gy~~~~~~~~-------d~Fp~t~HvE~v~ 427 (433)
T 1uwv_A 371 --------------GVMQQI-IKLEPIRIVYVSCNPATLARDS-EALLKAGYTIARLAML-------DMFPHTGHLESMV 427 (433)
T ss_dssp --------------HHHHHH-HHHCCSEEEEEESCHHHHHHHH-HHHHHTTCEEEEEEEE-------CCSTTSSCCEEEE
T ss_pred --------------HHHHHH-HhcCCCeEEEEECChHHHHhhH-HHHHHCCcEEEEEEEe-------ccCCCCCeEEEEE
Confidence 112222 1268999988877654433343 4667789998875222 2233445566666
Q ss_pred eeec
Q 043334 237 EIEK 240 (903)
Q Consensus 237 ~~e~ 240 (903)
.+++
T Consensus 428 ll~r 431 (433)
T 1uwv_A 428 LFSR 431 (433)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 6655
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=132.97 Aligned_cols=121 Identities=14% Similarity=0.121 Sum_probs=98.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..++...++.+|+|+|+|+.+++.|++|+..+++ .+++++++|+.+..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL----------------ENIEPVQSRVEEFP 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC----------------SSEEEEECCTTTSC
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCeEEEecchhhCC
Confidence 46799999999999999999988889999999999999999999988876 35999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|++|.. .. +..+++.+.++|+|||.+++.
T Consensus 129 ~~--~~~D~i~~~~~-------~~-----------------------------------~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 129 SE--PPFDGVISRAF-------AS-----------------------------------LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CC--SCEEEEECSCS-------SS-----------------------------------HHHHHHHHTTSEEEEEEEEEE
T ss_pred cc--CCcCEEEEecc-------CC-----------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 32 38999996420 00 227899999999999999999
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+...... +.+++. ||...+.
T Consensus 165 ~~~~~~~~-~~~~~~--g~~~~~~ 185 (207)
T 1jsx_A 165 KGQMPEDE-IALLPE--EYQVESV 185 (207)
T ss_dssp ESSCCHHH-HHTSCT--TEEEEEE
T ss_pred eCCCchHH-HHHHhc--CCceeee
Confidence 88765443 344544 8887664
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.3e-13 Score=142.03 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhc-ccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEK-WLPSKVYGLDINPRAIRISWINLYLN-ALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~-~~~~~V~giDis~~al~~A~~n~~~~-gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.++.+|||+|||+|.++..+++. .++.+|+|+|+++.+++.|++|+..+ |. +++++.++|+.
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~----------------~~v~~~~~d~~ 172 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI----------------GNVRTSRSDIA 172 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC----------------TTEEEECSCTT
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC----------------CcEEEEECchh
Confidence 46789999999999999999997 56789999999999999999999877 65 47999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+.... ++||+|++|+|.. ..+++++.++|||||.+
T Consensus 173 ~~~~~--~~fD~Vi~~~~~~-------------------------------------------~~~l~~~~~~LkpgG~l 207 (275)
T 1yb2_A 173 DFISD--QMYDAVIADIPDP-------------------------------------------WNHVQKIASMMKPGSVA 207 (275)
T ss_dssp TCCCS--CCEEEEEECCSCG-------------------------------------------GGSHHHHHHTEEEEEEE
T ss_pred ccCcC--CCccEEEEcCcCH-------------------------------------------HHHHHHHHHHcCCCCEE
Confidence 85433 3899999865521 04588899999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++..........+.+.+++.||...+.+.
T Consensus 208 ~i~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 208 TFYLPNFDQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEEESSHHHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99887654445556778889998887754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-12 Score=127.24 Aligned_cols=120 Identities=23% Similarity=0.259 Sum_probs=99.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.|++|+..+++ ++++++++|+.+..
T Consensus 35 ~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~~~~~~~~d~~~~~ 96 (183)
T 2yxd_A 35 KDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNI----------------KNCQIIKGRAEDVL 96 (183)
T ss_dssp TTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTC----------------CSEEEEESCHHHHG
T ss_pred CCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCC----------------CcEEEEECCccccc
Confidence 568999999999999999988 588999999999999999999988876 47999999998854
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|+++++ .. ...+++++.++ |||.+++.
T Consensus 97 ~~--~~~D~i~~~~~----~~--------------------------------------~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 97 DK--LEFNKAFIGGT----KN--------------------------------------IEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp GG--CCCSEEEECSC----SC--------------------------------------HHHHHHHHHHT--TCCEEEEE
T ss_pred cC--CCCcEEEECCc----cc--------------------------------------HHHHHHHHhhC--CCCEEEEE
Confidence 33 38999999877 10 12567777777 99999998
Q ss_pred eCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.........+.+.+++.||.....
T Consensus 131 ~~~~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 131 TIVLENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred ecccccHHHHHHHHHHcCCeEEEE
Confidence 876666666788999999876654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=135.78 Aligned_cols=136 Identities=14% Similarity=0.168 Sum_probs=98.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++..++++ .....+++++++|+....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~~~~v~~~~~d~~~~~ 97 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLP-----------RNQWERLQLIQGALTYQD 97 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCC-----------HHHHTTEEEEECCTTSCC
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCC-----------cccCcceEEEeCCccccc
Confidence 467999999999999999999877789999999999999999999776652 000137999999986554
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.... + ....+..+++++.++|||||.+++.
T Consensus 98 ~~~-~~fD~v~~~~~l~~------~------------------------------~~~~~~~~l~~~~~~LkpgG~li~~ 140 (217)
T 3jwh_A 98 KRF-HGYDAATVIEVIEH------L------------------------------DLSRLGAFERVLFEFAQPKIVIVTT 140 (217)
T ss_dssp GGG-CSCSEEEEESCGGG------C------------------------------CHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccC-CCcCEEeeHHHHHc------C------------------------------CHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 332 38999997532221 1 0112347899999999999987774
Q ss_pred eCCC---------------------CcHHHHH----HHHHHCCCeEEEE
Q 043334 190 MGGR---------------------PGQGVCK----RLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~---------------------~~~~~l~----~ll~~~gf~~~~~ 213 (903)
.... .....++ +++++.||++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 141 PNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQ 189 (217)
T ss_dssp EBHHHHHHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEEEC
T ss_pred cCcccchhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEEEE
Confidence 3211 1334444 7888999987544
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.6e-13 Score=143.59 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=100.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|.+|||+|||+|.+++.+|+. ++.+|+|+|+||.+++.+++|++.|+++ ++++++++|..++
T Consensus 124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~---------------~~v~~~~~D~~~~ 187 (278)
T 3k6r_A 124 KPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVE---------------DRMSAYNMDNRDF 187 (278)
T ss_dssp CTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCT---------------TTEEEECSCTTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCC---------------CcEEEEeCcHHHh
Confidence 36899999999999999999876 4579999999999999999999999983 6899999999988
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... +.||.|+.|||+.. . .++..+.+.||+||.+.+
T Consensus 188 ~~~--~~~D~Vi~~~p~~~-----------~-------------------------------~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 188 PGE--NIADRILMGYVVRT-----------H-------------------------------EFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp CCC--SCEEEEEECCCSSG-----------G-------------------------------GGHHHHHHHEEEEEEEEE
T ss_pred ccc--cCCCEEEECCCCcH-----------H-------------------------------HHHHHHHHHcCCCCEEEE
Confidence 654 38999999988752 0 346677889999999876
Q ss_pred EeC------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMG------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... .....+.+++..++.|+.....
T Consensus 224 ~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 224 HNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp EEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred EeeecccccchhHHHHHHHHHHHcCCcEEEE
Confidence 321 1233456677888999876544
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4e-12 Score=133.88 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=98.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|++++..+++ +++++.++|+.+++
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGV----------------ENVRFQQGTAESLP 82 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTC----------------CSEEEEECBTTBCC
T ss_pred CCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCC----------------CCeEEEecccccCC
Confidence 57899999999999999999874 5999999999999999999987776 47999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.....++ ...+++++.++|||||.+++.
T Consensus 83 ~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 123 (239)
T 1xxl_A 83 FPD-DSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRFLLV 123 (239)
T ss_dssp SCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CcEEEEEECCchhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 433 48999997522221110 237899999999999999984
Q ss_pred eCC------------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGG------------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~------------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... ......+.+++++.||..+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~ 171 (239)
T 1xxl_A 124 DHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 171 (239)
T ss_dssp EECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred EcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEE
Confidence 321 123455667788888887665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-12 Score=133.63 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=98.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++..++++. ...++++++++|+....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----------~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE-----------MQRKRISLFQSSLVYRD 97 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCH-----------HHHTTEEEEECCSSSCC
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-----------ccCcceEEEeCcccccc
Confidence 4679999999999999999988766899999999999999999997766520 00127999999996654
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.... +. ......+++++.++|||||.+++.
T Consensus 98 ~~~-~~fD~V~~~~~l~~------~~------------------------------~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 98 KRF-SGYDAATVIEVIEH------LD------------------------------ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp GGG-TTCSEEEEESCGGG------CC------------------------------HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred ccc-CCCCEEEEHHHHHh------CC------------------------------HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 332 38999996522221 10 111337899999999999977764
Q ss_pred eCCC---------------------CcHHHHH----HHHHHCCCeEEEE
Q 043334 190 MGGR---------------------PGQGVCK----RLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~---------------------~~~~~l~----~ll~~~gf~~~~~ 213 (903)
.... .....++ +++++.||++...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 141 PNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp EBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred cchhhhhhhcccCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEE
Confidence 3221 1344444 7788899977554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=147.69 Aligned_cols=140 Identities=20% Similarity=0.179 Sum_probs=103.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.+ ++.+|+|+|+|+.|++.|++|+..++.... +....++++++++|+.+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--------g~~~~~~v~~~~~d~~~ 153 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF--------GSPSRSNVRFLKGFIEN 153 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHH--------SSTTCCCEEEEESCTTC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcc--------cccCCCceEEEEccHHH
Confidence 467899999999999999999987 578999999999999999999875521000 00002589999999988
Q ss_pred c------ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhccc
Q 043334 108 Y------CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIK 181 (903)
Q Consensus 108 ~------~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lk 181 (903)
+ ... .++||+|++|..+...++ ...+++++.++||
T Consensus 154 l~~~~~~~~~-~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~r~Lk 194 (383)
T 4fsd_A 154 LATAEPEGVP-DSSVDIVISNCVCNLSTN--------------------------------------KLALFKEIHRVLR 194 (383)
T ss_dssp GGGCBSCCCC-TTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEE
T ss_pred hhhcccCCCC-CCCEEEEEEccchhcCCC--------------------------------------HHHHHHHHHHHcC
Confidence 6 322 348999998754443221 1278999999999
Q ss_pred CCcEEEEEeCC----------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 182 PSGIMIFNMGG----------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 182 pgG~ll~~~~~----------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
|||++++.... ......+.+++++.||..++...
T Consensus 195 pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 195 DGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp EEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 99999984311 12346678899999998776644
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=138.62 Aligned_cols=142 Identities=15% Similarity=0.103 Sum_probs=96.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc----ccc-CCCCcchhhhcccCCcEEEEEcc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA----LDE-KGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g----l~~-~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
++.+|||+|||+|..+..|++. +.+|+|+|+|+.|++.|+++..... ++. .+..++. ....+++++++|
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~D 141 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFK----SSSGSISLYCCS 141 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE----ETTSSEEEEESC
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccc----cCCCceEEEECc
Confidence 5789999999999999999987 7899999999999999987652100 000 0000000 012479999999
Q ss_pred ccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 105 LLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 105 l~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
+.++.....++||+|+++-.+...+. .. ...+++++.++|||||
T Consensus 142 ~~~l~~~~~~~FD~V~~~~~l~~l~~------~~------------------------------~~~~l~~~~~~LkpGG 185 (252)
T 2gb4_A 142 IFDLPRANIGKFDRIWDRGALVAINP------GD------------------------------HDRYADIILSLLRKEF 185 (252)
T ss_dssp TTTGGGGCCCCEEEEEESSSTTTSCG------GG------------------------------HHHHHHHHHHTEEEEE
T ss_pred cccCCcccCCCEEEEEEhhhhhhCCH------HH------------------------------HHHHHHHHHHHcCCCe
Confidence 99987643248999997644332110 00 1267999999999999
Q ss_pred EEEEEe-C----------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 185 IMIFNM-G----------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~-~----------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
++++.. . .....+.+.+++.. +|++....
T Consensus 186 ~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 186 QYLVAVLSYDPTKHAGPPFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp EEEEEEEECCTTSCCCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred EEEEEEEecCCccCCCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence 996432 1 01345667778876 58877663
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=138.14 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=92.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. ++++++++|+.+..
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 104 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANA---------------------PHADVYEWNGKGEL 104 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCSCSSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhC---------------------CCceEEEcchhhcc
Confidence 5789999999999999999987 679999999999999999882 47899999996543
Q ss_pred cCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+.. .++||+|++|+.. ..+++++.++|||||.++.
T Consensus 105 ~~~~~~~fD~v~~~~~~--------------------------------------------~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 105 PAGLGAPFGLIVSRRGP--------------------------------------------TSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp CTTCCCCEEEEEEESCC--------------------------------------------SGGGGGHHHHEEEEEEEEE
T ss_pred CCcCCCCEEEEEeCCCH--------------------------------------------HHHHHHHHHHcCCCcEEEE
Confidence 322 4589999986100 0457788999999999994
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. .......+.+.+.+.||......
T Consensus 141 ~~-~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 141 VG-PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp EE-SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred eC-CcCCHHHHHHHHHHCCCeEEEEE
Confidence 33 33344455789999999987764
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=139.40 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=80.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++. .+++++++|+.++.
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 106 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADS--FGTVEGLELSADMLAIARRRN---------------------PDAVLHHGDMRDFS 106 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTT--SSEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCTTTCC
T ss_pred CCCcEEEeCCcCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC---------------------CCCEEEECChHHCC
Confidence 5689999999999999999887 569999999999999999875 36899999999876
Q ss_pred cCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. .++||+|+++. .... +. ..+....+++++.++|||||.+++
T Consensus 107 ~--~~~fD~v~~~~~~l~~------~~-----------------------------~~~~~~~~l~~~~~~L~pgG~l~i 149 (263)
T 3pfg_A 107 L--GRRFSAVTCMFSSIGH------LA-----------------------------GQAELDAALERFAAHVLPDGVVVV 149 (263)
T ss_dssp C--SCCEEEEEECTTGGGG------SC-----------------------------HHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred c--cCCcCEEEEcCchhhh------cC-----------------------------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5 34899999753 2221 10 011234789999999999999999
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 150 ~ 150 (263)
T 3pfg_A 150 E 150 (263)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=136.41 Aligned_cols=130 Identities=19% Similarity=0.302 Sum_probs=100.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++.. ..+++++++|+.++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~-------------------~~~~~~~~~d~~~~ 102 (253)
T 3g5l_A 43 FNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT-------------------SPVVCYEQKAIEDI 102 (253)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHCC-------------------CTTEEEEECCGGGC
T ss_pred cCCCEEEEECCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhhc-------------------cCCeEEEEcchhhC
Confidence 367899999999999999999873 3399999999999999998863 14799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++-.....++ ...+++++.++|||||.+++
T Consensus 103 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~ 143 (253)
T 3g5l_A 103 AIEP-DAYNVVLSSLALHYIAS--------------------------------------FDDICKKVYINLKSSGSFIF 143 (253)
T ss_dssp CCCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CCeEEEEEchhhhhhhh--------------------------------------HHHHHHHHHHHcCCCcEEEE
Confidence 5433 48999997532221110 23789999999999999999
Q ss_pred EeCCC---------------------------------------------CcHHHHHHHHHHCCCeEEEEEehh
Q 043334 189 NMGGR---------------------------------------------PGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 189 ~~~~~---------------------------------------------~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
..... .....+.++++++||+++.+....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 144 SVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp EEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred EeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence 53210 055677899999999999885443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.1e-12 Score=131.85 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=84.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++...++ .+++++++|+.+..
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~-----------------~~~~~~~~d~~~~~ 98 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAKSRE-----------------SNVEFIVGDARKLS 98 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTT-----------------CCCEEEECCTTSCC
T ss_pred CCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcC-----------------CCceEEECchhcCC
Confidence 47899999999999999999874 399999999999999999987654 37999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|++|++..... . .....+++++.++|||||.+++.
T Consensus 99 ~~~-~~~D~v~~~~~~~~~~----~--------------------------------~~~~~~l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 99 FED-KTFDYVIFIDSIVHFE----P--------------------------------LELNQVFKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp SCT-TCEEEEEEESCGGGCC----H--------------------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CcEEEEEEcCchHhCC----H--------------------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 332 3899999987732111 0 01237899999999999999885
Q ss_pred eC
Q 043334 190 MG 191 (903)
Q Consensus 190 ~~ 191 (903)
..
T Consensus 142 ~~ 143 (227)
T 1ve3_A 142 FT 143 (227)
T ss_dssp EE
T ss_pred ec
Confidence 43
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=137.67 Aligned_cols=131 Identities=17% Similarity=0.188 Sum_probs=102.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....++ .++++++++|+.+.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL---------------ADNITVKYGSFLEI 144 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC---------------TTTEEEEECCTTSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCC---------------CcceEEEEcCcccC
Confidence 367899999999999999999986 56999999999999999999987776 35899999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|+++-.....++ ...+++++.++|||||.+++
T Consensus 145 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~LkpgG~l~~ 185 (297)
T 2o57_A 145 PCED-NSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGVMAI 185 (297)
T ss_dssp SSCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CCEeEEEecchhhhcCC--------------------------------------HHHHHHHHHHHcCCCeEEEE
Confidence 5433 38999997532221111 23789999999999999998
Q ss_pred EeCC---------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGG---------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~---------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.... ......+.+++++.||+++...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 186 TDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp EEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 4321 1134556778999999988764
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=144.11 Aligned_cols=200 Identities=12% Similarity=0.085 Sum_probs=142.8
Q ss_pred cHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCC------CCcEEecCchHHHHHHHHHHhc------
Q 043334 630 PSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDI------NAEFIYADCSQSLFNKLVLCCI------ 693 (903)
Q Consensus 630 p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~p------e~~I~vt~Gs~~al~~ll~~l~------ 693 (903)
+..+.+.+...+.. |....+..++.+.+.+|+++.+|.+... ....++|+|++++...++.+..
T Consensus 87 ~~~~~~~l~~~~n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~ 166 (475)
T 3k40_A 87 PAIVADMLSGAIACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE 166 (475)
T ss_dssp HHHHHHHHHHHHCCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH
Confidence 33444555555544 2233445678899999999999987531 1147777877777666655542
Q ss_pred -------------cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-----CcEEEEECC
Q 043334 694 -------------LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVK-----KPWVYISGP 755 (903)
Q Consensus 694 -------------~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-----~~~vil~~P 755 (903)
.|++.|+++.++|..+...++..|++++.+|+++ ++ +|+++|++++++.+ +.+|+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~~~~~v~~d~--~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~ 243 (475)
T 3k40_A 167 VKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGVKLRSVQSEN--HR-MRGAALEKAIEQDVAEGLIPFYAVVTLG 243 (475)
T ss_dssp HHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTCEEEEECCBT--TB-CCHHHHHHHHHHHHHTTCEEEEEEEEBS
T ss_pred hhccCcccccccccCCeEEEECCCchHHHHHHHHHcCCceEEEECCC--CC-cCHHHHHHHHHHHHHCCCccEEEEEEec
Confidence 1356899999999999999999999999999963 56 99999999987641 236888999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc
Q 043334 756 TINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA 835 (903)
Q Consensus 756 ~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G 835 (903)
+ |+||.+-+ +++|.++|+++|+++++|.+|+...+..... ...+..+. ....+..|++|.++.|
T Consensus 244 ~-t~~G~~~~---l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~-----~~~~~gi~------~~Ds~~~~~hK~l~~p- 307 (475)
T 3k40_A 244 T-TNSCAFDY---LDECGPVGNKHNLWIHVDAAYAGSAFICPEY-----RHLMKGIE------SADSFNFNPHKWMLVN- 307 (475)
T ss_dssp C-TTTCCBCC---HHHHHHHHHHTTCEEEEECTTGGGGGGSGGG-----GGGGTTGG------GCSEEEECHHHHSSCC-
T ss_pred C-CCCcCcCC---HHHHHHHHHHhCCeEEEeHHhHHHHHhCHhh-----HHHhcCcc------cCCEEEECchhccCCC-
Confidence 8 99999966 8899999999999999999997543322111 01111111 1356789999988644
Q ss_pred ceeeEEEeCcHHH
Q 043334 836 LKFGFLVLNHPQL 848 (903)
Q Consensus 836 lRiG~lv~~~~~l 848 (903)
..+|+++..+...
T Consensus 308 ~g~g~l~~~~~~~ 320 (475)
T 3k40_A 308 FDCSAMWLKDPSW 320 (475)
T ss_dssp SSCEEEEESSGGG
T ss_pred CceEEEEEeCHHH
Confidence 5678888876533
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=137.67 Aligned_cols=133 Identities=14% Similarity=0.218 Sum_probs=96.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--------ccccCCCCcchhhhcccCCcEEEE
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--------ALDEKGQPIYDAEKKTLLDRVEFH 101 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--------gl~~~~~~~~~~~~~~~~~~v~~~ 101 (903)
++.+|||+|||+|.+++.+++..+..+|+|+|+|+.+++.|++|+..+ ++ +++.++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~----------------~nv~~~ 112 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF----------------QNINVL 112 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT----------------TTEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC----------------CcEEEE
Confidence 567999999999999999999988789999999999999999998776 43 479999
Q ss_pred Ecccccccc--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 102 ESDLLAYCR--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 102 ~gDl~~~~~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
++|+.+... ...+.+|.|+.+.|.-....... ... .+ ...+++++.++
T Consensus 113 ~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~----~~r--------------~~------------~~~~l~~~~~~ 162 (246)
T 2vdv_E 113 RGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKH----KAR--------------II------------TNTLLSEYAYV 162 (246)
T ss_dssp ECCTTSCGGGTSCTTCEEEEEEESCCCC----------CSS--------------CC------------CHHHHHHHHHH
T ss_pred eccHHHHHHHhccccccCEEEEECCCcccccchh----HHh--------------hc------------cHHHHHHHHHH
Confidence 999987432 22348999986633211100000 000 00 12789999999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHCCC
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFERRGF 208 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~~gf 208 (903)
|+|||.+++.+........+.+.+.+.++
T Consensus 163 LkpgG~l~~~td~~~~~~~~~~~~~~~~~ 191 (246)
T 2vdv_E 163 LKEGGVVYTITDVKDLHEWMVKHLEEHPL 191 (246)
T ss_dssp EEEEEEEEEEESCHHHHHHHHHHHHHSTT
T ss_pred cCCCCEEEEEeccHHHHHHHHHHHHhCcC
Confidence 99999999977665444555566777764
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.6e-12 Score=128.09 Aligned_cols=124 Identities=23% Similarity=0.273 Sum_probs=100.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++|+..+++ .+++++.++|+.+.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 94 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGL---------------GDNVTLMEGDAPEA 94 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTC---------------CTTEEEEESCHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCC---------------CcceEEEecCHHHh
Confidence 357899999999999999999874 8999999999999999999987775 25799999999884
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++.++. . +..+++++.++|+|||.+++
T Consensus 95 ~~~~-~~~D~v~~~~~~~------~-----------------------------------~~~~l~~~~~~l~~gG~l~~ 132 (192)
T 1l3i_A 95 LCKI-PDIDIAVVGGSGG------E-----------------------------------LQEILRIIKDKLKPGGRIIV 132 (192)
T ss_dssp HTTS-CCEEEEEESCCTT------C-----------------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred cccC-CCCCEEEECCchH------H-----------------------------------HHHHHHHHHHhcCCCcEEEE
Confidence 3332 2899999875531 0 12679999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEE
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVD 211 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~ 211 (903)
..........+.+.+++.||...
T Consensus 133 ~~~~~~~~~~~~~~l~~~g~~~~ 155 (192)
T 1l3i_A 133 TAILLETKFEAMECLRDLGFDVN 155 (192)
T ss_dssp EECBHHHHHHHHHHHHHTTCCCE
T ss_pred EecCcchHHHHHHHHHHCCCceE
Confidence 87766566666788999998543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=137.61 Aligned_cols=140 Identities=13% Similarity=0.107 Sum_probs=94.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||||||+|.+++.+|+..|+.+|+|+|+|+.|++.|++++...... ......++.++++|+.+..
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~----------~~~~~~nv~~~~~d~~~~l 115 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAA----------PAGGFQNIACLRSNAMKHL 115 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHS----------TTCCCTTEEEEECCTTTCH
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHH----------HhcCCCeEEEEECcHHHhh
Confidence 456899999999999999999988899999999999999999987542100 0001258999999998732
Q ss_pred c--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 R--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
. ...++||.|+.|.|--.....+ .... + ....+++++.++|||||.++
T Consensus 116 ~~~~~~~~~D~v~~~~~dp~~k~~h----~krr---------------~-----------~~~~~l~~~~~~LkpGG~l~ 165 (235)
T 3ckk_A 116 PNFFYKGQLTKMFFLFPDPHFKRTK----HKWR---------------I-----------ISPTLLAEYAYVLRVGGLVY 165 (235)
T ss_dssp HHHCCTTCEEEEEEESCC------------------------------C-----------CCHHHHHHHHHHEEEEEEEE
T ss_pred hhhCCCcCeeEEEEeCCCchhhhhh----hhhh---------------h-----------hhHHHHHHHHHHCCCCCEEE
Confidence 2 1234899998763311000000 0000 0 01268999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCC-Ce
Q 043334 188 FNMGGRPGQGVCKRLFERRG-FR 209 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~g-f~ 209 (903)
+.+..........+.+.+.+ |.
T Consensus 166 ~~td~~~~~~~~~~~l~~~~~f~ 188 (235)
T 3ckk_A 166 TITDVLELHDWMCTHFEEHPLFE 188 (235)
T ss_dssp EEESCHHHHHHHHHHHHTSTTEE
T ss_pred EEeCCHHHHHHHHHHHHHCCCcc
Confidence 98766444444455666665 44
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.6e-12 Score=141.02 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+| |+|.+++.++...+..+|+|+|+|+.|++.|++|+..+|+ .+++++++|+.+..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~----------------~~v~~~~~D~~~~l 234 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY----------------EDIEIFTFDLRKPL 234 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC----------------CCEEEECCCTTSCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CCEEEEEChhhhhc
Confidence 578999999 9999999999876657999999999999999999988876 37999999998833
Q ss_pred cC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc-EEE
Q 043334 110 RD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG-IMI 187 (903)
Q Consensus 110 ~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG-~ll 187 (903)
+. ..++||+|++||||... . ...+++++.++||||| .++
T Consensus 235 ~~~~~~~fD~Vi~~~p~~~~-------~--------------------------------~~~~l~~~~~~LkpgG~~~~ 275 (373)
T 2qm3_A 235 PDYALHKFDTFITDPPETLE-------A--------------------------------IRAFVGRGIATLKGPRCAGY 275 (373)
T ss_dssp CTTTSSCBSEEEECCCSSHH-------H--------------------------------HHHHHHHHHHTBCSTTCEEE
T ss_pred hhhccCCccEEEECCCCchH-------H--------------------------------HHHHHHHHHHHcccCCeEEE
Confidence 22 23489999999998731 0 1278999999999999 446
Q ss_pred EEeCC-CCcH---HHHHHHHH-HCCCeEEEEE
Q 043334 188 FNMGG-RPGQ---GVCKRLFE-RRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~-~~~~---~~l~~ll~-~~gf~~~~~~ 214 (903)
+.+.. .... ..+.+.+. +.||.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 276 FGITRRESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp EEECTTTCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred EEEecCcCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 66655 2333 45566777 8898876654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-12 Score=136.38 Aligned_cols=147 Identities=14% Similarity=0.180 Sum_probs=104.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++..++ .+|+|+|+|+.+++.+++|+..+|+ .+++++++|+.++
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~----------------~~v~~~~~D~~~~ 146 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV----------------LNTIIINADMRKY 146 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC----------------CcEEEEeCChHhc
Confidence 5789999999999999999998766 7999999999999999999998886 4799999999887
Q ss_pred ccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
... ..++||+|++|||+.........+ .+..+.. .........+++.+.++|||||.
T Consensus 147 ~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p----~~~~~~~----------------~~~~~~~~~~l~~~~~~LkpgG~ 206 (274)
T 3ajd_A 147 KDYLLKNEIFFDKILLDAPCSGNIIKDKNR----NVSEEDI----------------KYCSLRQKELIDIGIDLLKKDGE 206 (274)
T ss_dssp HHHHHHTTCCEEEEEEEECCC----------------HHHH----------------TGGGTCHHHHHHHHHHHEEEEEE
T ss_pred chhhhhccccCCEEEEcCCCCCCcccccCC----CCCHHHH----------------HHHHHHHHHHHHHHHHhCCCCCE
Confidence 541 123899999999997533211100 0000000 00111234889999999999999
Q ss_pred EEEEeCCC---CcHHHHHHHHHHC-CCeEEE
Q 043334 186 MIFNMGGR---PGQGVCKRLFERR-GFRVDK 212 (903)
Q Consensus 186 ll~~~~~~---~~~~~l~~ll~~~-gf~~~~ 212 (903)
+++.+... .....++..++++ +|+...
T Consensus 207 lv~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 207 LVYSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp EEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred EEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 99965533 4566667777665 466543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=135.77 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=102.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc-ccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLN-ALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~-gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.++.+|||+|||+|.++..+++.. ++.+|+++|+++.+++.|++|+..+ +. +++++.++|+.
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~----------------~~v~~~~~d~~ 158 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV----------------ENVRFHLGKLE 158 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC----------------CCEEEEESCGG
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC----------------CCEEEEECchh
Confidence 467899999999999999999984 4689999999999999999999776 64 58999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+..... ++||+|++|+|.. ..+++++.++|+|||.+
T Consensus 159 ~~~~~~-~~~D~v~~~~~~~-------------------------------------------~~~l~~~~~~L~~gG~l 194 (258)
T 2pwy_A 159 EAELEE-AAYDGVALDLMEP-------------------------------------------WKVLEKAALALKPDRFL 194 (258)
T ss_dssp GCCCCT-TCEEEEEEESSCG-------------------------------------------GGGHHHHHHHEEEEEEE
T ss_pred hcCCCC-CCcCEEEECCcCH-------------------------------------------HHHHHHHHHhCCCCCEE
Confidence 873332 3799999875522 04588899999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++..........+.+.+++.||...+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 195 VAYLPNITQVLELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp EEEESCHHHHHHHHHHHTTTTEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHCCCceEEEEE
Confidence 99887654444556678889998877654
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=133.54 Aligned_cols=130 Identities=15% Similarity=0.155 Sum_probs=99.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .+++++..+|+.++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 126 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN---------------LRSKRVLLAGWEQF 126 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC---------------CSCEEEEESCGGGC
T ss_pred CCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCC---------------CCCeEEEECChhhC
Confidence 467899999999999999999776 46999999999999999999977665 35899999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+ ++||+|+++-.....+. .....+++++.++|||||.+++
T Consensus 127 ~----~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 127 D----EPVDRIVSIGAFEHFGH------------------------------------ERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp C----CCCSEEEEESCGGGTCT------------------------------------TTHHHHHHHHHHHSCTTCEEEE
T ss_pred C----CCeeEEEEeCchhhcCh------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 4 38999996532221110 0123789999999999999998
Q ss_pred EeCC----------------------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGG----------------------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~----------------------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.... .+....+.+++++.||+++...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 167 HTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQ 226 (287)
T ss_dssp EEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEE
T ss_pred EEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 4321 1234566778888899887763
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=135.91 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=98.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCC-HHHHHHH---HHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDIN-PRAIRIS---WINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis-~~al~~A---~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++.+|||+|||+|.++..+++..++.+|+|+|+| +.|++.| ++++...++ .++.+.++|+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~----------------~~v~~~~~d~ 87 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL----------------SNVVFVIAAA 87 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC----------------SSEEEECCBT
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC----------------CCeEEEEcCH
Confidence 5679999999999999999988788899999999 7777776 777766665 4799999999
Q ss_pred cccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 106 LAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 106 ~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.+++......+|.|.+|+|+.. ....... ....+++++.++|||||.
T Consensus 88 ~~l~~~~~d~v~~i~~~~~~~~------~~~~~~~---------------------------~~~~~l~~~~r~LkpGG~ 134 (225)
T 3p2e_A 88 ESLPFELKNIADSISILFPWGT------LLEYVIK---------------------------PNRDILSNVADLAKKEAH 134 (225)
T ss_dssp TBCCGGGTTCEEEEEEESCCHH------HHHHHHT---------------------------TCHHHHHHHHTTEEEEEE
T ss_pred HHhhhhccCeEEEEEEeCCCcH------Hhhhhhc---------------------------chHHHHHHHHHhcCCCcE
Confidence 8874322237899998887652 0000000 012679999999999999
Q ss_pred EEEEeC--C-------------CCcHH-----HHHHHHHHCCCeEEEEE
Q 043334 186 MIFNMG--G-------------RPGQG-----VCKRLFERRGFRVDKLW 214 (903)
Q Consensus 186 ll~~~~--~-------------~~~~~-----~l~~ll~~~gf~~~~~~ 214 (903)
+++... . ..... .+.+.+++.||.+....
T Consensus 135 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 135 FEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVK 183 (225)
T ss_dssp EEEEECCCC--------------CCHHHHHSHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEeccccchhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeee
Confidence 998221 1 01111 26778899999987663
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=143.51 Aligned_cols=139 Identities=14% Similarity=0.217 Sum_probs=99.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-----CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-----SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-----~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
++.+|||+|||+|.+++.+++..+. .+++|+|+++.+++.|+.|+..+|+ ++.++++|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-----------------~~~i~~~D 192 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-----------------KMTLLHQD 192 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-----------------CCEEEESC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-----------------CceEEECC
Confidence 4679999999999999999988754 6899999999999999999987765 58899999
Q ss_pred ccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccH-HHHHHHHHHHhhcccCC
Q 043334 105 LLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGL-GLIARAVEEGIGVIKPS 183 (903)
Q Consensus 105 l~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~-~~~~~~l~~~~~~Lkpg 183 (903)
.+..... .+||+|++||||...+... ....+.+ . ...|. .....+++.+.+.|+||
T Consensus 193 ~l~~~~~--~~fD~Ii~NPPfg~~~~~~----~~~~~~~--------------~---~~~g~~~~~~~~l~~~~~~Lk~g 249 (344)
T 2f8l_A 193 GLANLLV--DPVDVVISDLPVGYYPDDE----NAKTFEL--------------C---REEGHSFAHFLFIEQGMRYTKPG 249 (344)
T ss_dssp TTSCCCC--CCEEEEEEECCCSEESCHH----HHTTSTT--------------C---CSSSCEEHHHHHHHHHHHTEEEE
T ss_pred CCCcccc--CCccEEEECCCCCCcCchh----hhhhccc--------------c---CCCCcchHHHHHHHHHHHHhCCC
Confidence 8875432 3899999999975322110 0001100 0 00111 12336899999999999
Q ss_pred cEEEEEeC-----CCCcHHHHHHHHHHCCCe
Q 043334 184 GIMIFNMG-----GRPGQGVCKRLFERRGFR 209 (903)
Q Consensus 184 G~ll~~~~-----~~~~~~~l~~ll~~~gf~ 209 (903)
|++++.++ ... ...+++++.+.|+.
T Consensus 250 G~~~~v~p~~~~~~~~-~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 250 GYLFFLVPDAMFGTSD-FAKVDKFIKKNGHI 279 (344)
T ss_dssp EEEEEEEEGGGGGSTT-HHHHHHHHHHHEEE
T ss_pred CEEEEEECchhcCCch-HHHHHHHHHhCCeE
Confidence 99999873 333 34556777777753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=136.37 Aligned_cols=144 Identities=13% Similarity=0.098 Sum_probs=96.5
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
|...+...+.... ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++...++
T Consensus 45 ~~~~~~~~l~~~~--~~~~~~vLDiGcGtG~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~-------------- 107 (236)
T 1zx0_A 45 WETPYMHALAAAA--SSKGGRVLEVGFGMAIAASKVQEA-PIDEHWIIECNDGVFQRLRDWAPRQT-------------- 107 (236)
T ss_dssp GGHHHHHHHHHHH--TTTCEEEEEECCTTSHHHHHHHTS-CEEEEEEEECCHHHHHHHHHHGGGCS--------------
T ss_pred HHHHHHHHHHhhc--CCCCCeEEEEeccCCHHHHHHHhc-CCCeEEEEcCCHHHHHHHHHHHHhcC--------------
Confidence 5544444433321 125789999999999999999764 34599999999999999999876554
Q ss_pred ccCCcEEEEEcccccc--ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 93 TLLDRVEFHESDLLAY--CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~--~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
.+++++++|+.+. ... +++||+|++| .+.. .... .......
T Consensus 108 ---~~v~~~~~d~~~~~~~~~-~~~fD~V~~d-~~~~--~~~~------------------------------~~~~~~~ 150 (236)
T 1zx0_A 108 ---HKVIPLKGLWEDVAPTLP-DGHFDGILYD-TYPL--SEET------------------------------WHTHQFN 150 (236)
T ss_dssp ---SEEEEEESCHHHHGGGSC-TTCEEEEEEC-CCCC--BGGG------------------------------TTTHHHH
T ss_pred ---CCeEEEecCHHHhhcccC-CCceEEEEEC-Cccc--chhh------------------------------hhhhhHH
Confidence 3799999999887 333 2489999974 1110 0000 0011234
Q ss_pred HHHHHHhhcccCCcEEEEEeCCC---------C-----cHHHHHHHHHHCCCeE
Q 043334 171 RAVEEGIGVIKPSGIMIFNMGGR---------P-----GQGVCKRLFERRGFRV 210 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~~~~~---------~-----~~~~l~~ll~~~gf~~ 210 (903)
.+++++.++|||||++++..... . ........+.+.||..
T Consensus 151 ~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 151 FIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp HHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred HHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 67999999999999999742110 0 0122245788899973
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-12 Score=132.85 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=100.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|+++.... ++++++++|+.+.
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------------------~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN------------------NKIIFEANDILTK 114 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC------------------TTEEEEECCTTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC------------------CCeEEEECccccC
Confidence 467899999999999999999987 689999999999999999876322 4799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|+++-.... + +......+++++.++|||||.+++
T Consensus 115 ~~~~-~~fD~v~~~~~l~~------~------------------------------~~~~~~~~l~~~~~~L~pgG~l~~ 157 (266)
T 3ujc_A 115 EFPE-NNFDLIYSRDAILA------L------------------------------SLENKNKLFQKCYKWLKPTGTLLI 157 (266)
T ss_dssp CCCT-TCEEEEEEESCGGG------S------------------------------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CcEEEEeHHHHHHh------c------------------------------ChHHHHHHHHHHHHHcCCCCEEEE
Confidence 5433 48999997532221 1 012234789999999999999998
Q ss_pred EeC---------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMG---------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~---------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... .......+.+++++.||+.+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 204 (266)
T 3ujc_A 158 TDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSK 204 (266)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEE
Confidence 542 12345667889999999988764
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.2e-12 Score=132.51 Aligned_cols=127 Identities=23% Similarity=0.260 Sum_probs=99.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++. . ..+++++++|+.+..
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---~----------------~~~~~~~~~d~~~~~ 111 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---E----------------GPDLSFIKGDLSSLP 111 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---C----------------BTTEEEEECBTTBCS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---c----------------cCCceEEEcchhcCC
Confidence 6789999999999999999987 679999999999999998764 1 247999999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.....++ ...+++++.++|+|||.+++.
T Consensus 112 ~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~ 152 (242)
T 3l8d_A 112 FEN-EQFEAIMAINSLEWTEE--------------------------------------PLRALNEIKRVLKSDGYACIA 152 (242)
T ss_dssp SCT-TCEEEEEEESCTTSSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CCccEEEEcChHhhccC--------------------------------------HHHHHHHHHHHhCCCeEEEEE
Confidence 433 48999997643332111 126799999999999999996
Q ss_pred eCC---------------------CCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGG---------------------RPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~---------------------~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
... ......+++++++.||+++.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 153 ILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp EECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 521 134456788999999999887543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-12 Score=138.31 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=83.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+++ +..+++++++|+.++.
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPAD-------------VRDRCTLVQGDMSAFA 146 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHH-------------HHTTEEEEECBTTBCC
T ss_pred CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccc-------------cccceEEEeCchhcCC
Confidence 3459999999999999999987 689999999999999999998765420 0147999999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|++.. ....+. ..+....+++++.++|||||.+++.
T Consensus 147 ~~--~~fD~v~~~~-------------~~~~~~----------------------~~~~~~~~l~~~~~~L~pgG~l~~~ 189 (299)
T 3g2m_A 147 LD--KRFGTVVISS-------------GSINEL----------------------DEADRRGLYASVREHLEPGGKFLLS 189 (299)
T ss_dssp CS--CCEEEEEECH-------------HHHTTS----------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--CCcCEEEECC-------------cccccC----------------------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 53 4899988420 011110 1122348899999999999999995
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 190 ~ 190 (299)
T 3g2m_A 190 L 190 (299)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.36 E-value=8.7e-12 Score=127.30 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=97.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++ +|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++...++. ++.++++|+.+..
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-----------------~~~~~~~d~~~~~ 89 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGV-----------------KITTVQSNLADFD 89 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTC-----------------CEEEECCBTTTBS
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCC-----------------ceEEEEcChhhcC
Confidence 45 9999999999999999886 67999999999999999999876653 6999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++..+. . .+....+++++.++|||||.+++.
T Consensus 90 ~~~-~~fD~v~~~~~~~--------~------------------------------~~~~~~~l~~~~~~L~pgG~l~~~ 130 (202)
T 2kw5_A 90 IVA-DAWEGIVSIFCHL--------P------------------------------SSLRQQLYPKVYQGLKPGGVFILE 130 (202)
T ss_dssp CCT-TTCSEEEEECCCC--------C------------------------------HHHHHHHHHHHHTTCCSSEEEEEE
T ss_pred CCc-CCccEEEEEhhcC--------C------------------------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 332 4899999753221 0 011337899999999999999996
Q ss_pred eCC----------------CCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGG----------------RPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~----------------~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
... ......++++++ ||+++.....
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~~~~ 171 (202)
T 2kw5_A 131 GFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNWLIANNL 171 (202)
T ss_dssp EECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred EeccccccCCCCCCCcceeecCHHHHHHHhc--CceEEEEEEE
Confidence 421 235567777887 9998877543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=133.79 Aligned_cols=121 Identities=11% Similarity=0.101 Sum_probs=90.8
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
....++..+..... ..++.+|||+|||+|..++.+++.++ +.+|+++|+|+++++.|++|+..++++
T Consensus 40 ~~~~~l~~l~~~~~-~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----------- 107 (221)
T 3dr5_A 40 MTGQLLTTLAATTN-GNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----------- 107 (221)
T ss_dssp HHHHHHHHHHHHSC-CTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC-----------
T ss_pred HHHHHHHHHHHhhC-CCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----------
Confidence 33444444443322 11234999999999999999999875 689999999999999999999888761
Q ss_pred cccCCcEEEEEccccccccCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
.++++++++|+.+..... .++||+|+.+.+.. .+.
T Consensus 108 ---~~~i~~~~gda~~~l~~~~~~~fD~V~~d~~~~-----------------------------------------~~~ 143 (221)
T 3dr5_A 108 ---PSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPM-----------------------------------------DLK 143 (221)
T ss_dssp ---GGGEEEECSCHHHHGGGSCTTCEEEEEECCCTT-----------------------------------------THH
T ss_pred ---cCcEEEEEcCHHHHHHHhcCCCcCeEEEcCcHH-----------------------------------------HHH
Confidence 148999999998875432 34899998643210 022
Q ss_pred HHHHHHhhcccCCcEEEEE
Q 043334 171 RAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~ 189 (903)
.+++++.++|||||++++.
T Consensus 144 ~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 144 ALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp HHHHHHHHHEEEEEEEEET
T ss_pred HHHHHHHHHcCCCcEEEEe
Confidence 6789999999999999983
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=133.03 Aligned_cols=123 Identities=15% Similarity=0.075 Sum_probs=95.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .+++++++|+.+..
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--------------------~~v~~~~~d~~~~~ 99 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRLK--------------------DGITYIHSRFEDAQ 99 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHSC--------------------SCEEEEESCGGGCC
T ss_pred CCCcEEEECCCCCHHHHHHHHh--CCcEEEEeCCHHHHHHHHHhhh--------------------CCeEEEEccHHHcC
Confidence 5678999999999999999987 4589999999999999998751 26999999998874
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh-hcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI-GVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~-~~LkpgG~ll~ 188 (903)
. +++||+|+++-... +.++ ...+++++. ++|||||.+++
T Consensus 100 ~--~~~fD~v~~~~~l~--------------~~~~------------------------~~~~l~~~~~~~LkpgG~l~i 139 (250)
T 2p7i_A 100 L--PRRYDNIVLTHVLE--------------HIDD------------------------PVALLKRINDDWLAEGGRLFL 139 (250)
T ss_dssp C--SSCEEEEEEESCGG--------------GCSS------------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred c--CCcccEEEEhhHHH--------------hhcC------------------------HHHHHHHHHHHhcCCCCEEEE
Confidence 3 34899999642111 1000 137899999 99999999999
Q ss_pred EeCCC--------------------------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGGR--------------------------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~~--------------------------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
..... .....+++++++.||++++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 140 VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp EEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 65321 245567788999999988774
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.6e-12 Score=137.21 Aligned_cols=117 Identities=13% Similarity=0.218 Sum_probs=85.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. ....++.+..+|+.++.
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~------------~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKE------------PAFDKWVIEEANWLTLD 122 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTS------------HHHHTCEEEECCGGGHH
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccc------------cccceeeEeecChhhCc
Confidence 4689999999999999999987 569999999999999999987544321 00136889999998875
Q ss_pred ---cCCCCceeEEEEC-CCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 110 ---RDHDIQLERIVGC-IPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 110 ---~~~~~~fD~Iv~N-pPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
... ++||+|+++ ..+...++. ....+....++++++++|||||+
T Consensus 123 ~~~~~~-~~fD~V~~~g~~l~~~~~~-------------------------------~~~~~~~~~~l~~~~~~LkpgG~ 170 (293)
T 3thr_A 123 KDVPAG-DGFDAVICLGNSFAHLPDS-------------------------------KGDQSEHRLALKNIASMVRPGGL 170 (293)
T ss_dssp HHSCCT-TCEEEEEECTTCGGGSCCS-------------------------------SSSSHHHHHHHHHHHHTEEEEEE
T ss_pred cccccC-CCeEEEEEcChHHhhcCcc-------------------------------ccCHHHHHHHHHHHHHHcCCCeE
Confidence 232 389999975 222211110 00112234789999999999999
Q ss_pred EEEEeCC
Q 043334 186 MIFNMGG 192 (903)
Q Consensus 186 ll~~~~~ 192 (903)
+++....
T Consensus 171 l~~~~~~ 177 (293)
T 3thr_A 171 LVIDHRN 177 (293)
T ss_dssp EEEEEEC
T ss_pred EEEEeCC
Confidence 9998764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-12 Score=140.55 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..|++ ++++++++|+.+..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~----------------~~~~~~~~d~~~~~ 270 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL----------------GNVRVLEANAFDLL 270 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC----------------TTEEEEESCHHHHH
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCC----------------CCceEEECCHHHHH
Confidence 4689999999999999999987 67999999999999999999999987 35999999998875
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.. ...+||+|++|||++...... .. .....+..++..+.++|+|||.+
T Consensus 271 ~~~~~~~~~fD~Ii~dpP~~~~~~~~-~~----------------------------~~~~~~~~~l~~~~~~LkpgG~l 321 (382)
T 1wxx_A 271 RRLEKEGERFDLVVLDPPAFAKGKKD-VE----------------------------RAYRAYKEVNLRAIKLLKEGGIL 321 (382)
T ss_dssp HHHHHTTCCEEEEEECCCCSCCSTTS-HH----------------------------HHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhcCCCeeEEEECCCCCCCChhH-HH----------------------------HHHHHHHHHHHHHHHhcCCCCEE
Confidence 42 123899999999997644321 11 11233558899999999999999
Q ss_pred EEEeCCCC-cH----HHHHHHHHHCCCeEE
Q 043334 187 IFNMGGRP-GQ----GVCKRLFERRGFRVD 211 (903)
Q Consensus 187 l~~~~~~~-~~----~~l~~ll~~~gf~~~ 211 (903)
++...... .. ..+++.+.+.|....
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~ 351 (382)
T 1wxx_A 322 ATASCSHHMTEPLFYAMVAEAAQDAHRLLR 351 (382)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 99765432 22 333455667775443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-12 Score=133.69 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=86.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..++.+++..++.+|+|+|+++.+++.|++++...++ .++++++++|+.+..
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 135 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF---------------ENQVRIIEGNALEQF 135 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC---------------TTTEEEEESCGGGCH
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEECCHHHHH
Confidence 46899999999999999999977788999999999999999999988876 258999999998865
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||+|+++.+.. .+..+++.+.++|||||++++
T Consensus 136 ~~~~~~~fD~V~~~~~~~-----------------------------------------~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 136 ENVNDKVYDMIFIDAAKA-----------------------------------------QSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp HHHTTSCEEEEEEETTSS-----------------------------------------SHHHHHHHHGGGEEEEEEEEE
T ss_pred HhhccCCccEEEEcCcHH-----------------------------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 4 2234899999653211 023679999999999999998
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 175 d 175 (232)
T 3ntv_A 175 D 175 (232)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-12 Score=126.96 Aligned_cols=126 Identities=21% Similarity=0.220 Sum_probs=96.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++ +++++.++|+.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~----------------~~~~~~~~d~~~~~ 93 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENL----------------DNLHTRVVDLNNLT 93 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC----------------TTEEEEECCGGGCC
T ss_pred CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCC----------------CCcEEEEcchhhCC
Confidence 5679999999999999999987 67999999999999999999977765 47999999998876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|+++.++...+. +....+++++.++|||||.+++.
T Consensus 94 ~--~~~~D~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 94 F--DRQYDFILSTVVLMFLEA------------------------------------KTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp C--CCCEEEEEEESCGGGSCG------------------------------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred C--CCCceEEEEcchhhhCCH------------------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 5 348999998754432110 01237899999999999998774
Q ss_pred eC-------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG-------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~-------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. .....+.+++++++ |+++..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 136 AAMDTADYPCTVGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp EEBCCSSSCCCSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EeeccCCcCCCCCCCCccCHHHHHHHhcC--CeEEEe
Confidence 31 12244566677765 887766
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=142.32 Aligned_cols=194 Identities=16% Similarity=0.228 Sum_probs=121.2
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHh-------------CCCEEEEEeCCHHHHHHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKW-------------LPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~-------------~~~~V~giDis~~al~~A~~n 73 (903)
.|.|+.-...+.+.+.. .++.+|||+|||||.+.+.+++.. +..+++|+|+++.+++.|+.|
T Consensus 153 fyTP~~v~~~mv~~l~~-----~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~n 227 (445)
T 2okc_A 153 YFTPRPLIQAMVDCINP-----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 227 (445)
T ss_dssp GCCCHHHHHHHHHHHCC-----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhCC-----CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHH
Confidence 46787544444454432 246799999999999999988764 346899999999999999999
Q ss_pred HHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccc
Q 043334 74 LYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNY 153 (903)
Q Consensus 74 ~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 153 (903)
+..+|++ ..++.+.++|.+...... +||+|++||||......... ... ..+
T Consensus 228 l~l~g~~--------------~~~~~i~~gD~l~~~~~~--~fD~Iv~NPPf~~~~~~~~~---~~~---~~~------- 278 (445)
T 2okc_A 228 LYLHGIG--------------TDRSPIVCEDSLEKEPST--LVDVILANPPFGTRPAGSVD---INR---PDF------- 278 (445)
T ss_dssp HHHTTCC--------------SSCCSEEECCTTTSCCSS--CEEEEEECCCSSCCCTTCCC---CCC---TTS-------
T ss_pred HHHhCCC--------------cCCCCEeeCCCCCCcccC--CcCEEEECCCCCCcccccch---hhH---hhc-------
Confidence 9888762 015778999998765433 89999999999965432110 000 000
Q ss_pred ccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCC-----CcHHHHHH-HHHHCCCeEEEEEehhhhccCCCccc
Q 043334 154 CALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR-----PGQGVCKR-LFERRGFRVDKLWQTKILQASEPFFA 227 (903)
Q Consensus 154 ~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~-----~~~~~l~~-ll~~~gf~~~~~~~~~~~~~~~~~~~ 227 (903)
.. ..+. ....+++.+.++|||||++.+.++.. .....+++ ++++.++..+.. .....|
T Consensus 279 -~~------~~~~-~~~~fl~~~~~~Lk~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~~ii~-------lp~~~F- 342 (445)
T 2okc_A 279 -YV------ETKN-NQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTILR-------LPTGIF- 342 (445)
T ss_dssp -SS------CCSC-HHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEEEE-------CCSSSS-
T ss_pred -CC------CCcc-hHHHHHHHHHHHhccCCEEEEEECCcccccCcHHHHHHHHHHhcCcEEEEEe-------CCCCCc-
Confidence 00 0000 12378999999999999999876421 12233444 555544443322 122233
Q ss_pred CCCCcce-eeeeeccCCcceeEEe
Q 043334 228 SDTDISA-LVEIEKNSPHRFEFFM 250 (903)
Q Consensus 228 ~~~~i~~-l~~~e~~~~~~f~f~~ 250 (903)
..+.+.. ++.+.++...+-.+|.
T Consensus 343 ~~t~v~t~Il~~~k~~~~~~v~~~ 366 (445)
T 2okc_A 343 YAQGVKANVLFFSKGQPTKEIWFY 366 (445)
T ss_dssp SSTTCCEEEEEEEESSCCSEEEEE
T ss_pred cCCCCCEEEEEEECCCCCceEEEE
Confidence 3445544 5566665543333343
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-12 Score=139.24 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=102.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++...+. ....++++++.+|+.++.
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------------~~~~~~v~~~~~D~~~~~ 162 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR------------SLADPRATVRVGDGLAFV 162 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------GGGCTTEEEEESCHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc------------ccCCCcEEEEECcHHHHH
Confidence 56899999999999999999876678999999999999999998742110 001358999999998876
Q ss_pred cC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.. ..++||+|++|++....+.... . ...+++++.++|||||++++
T Consensus 163 ~~~~~~~fDvIi~d~~~~~~~~~~l-----------------------~-----------~~~~l~~~~~~LkpgG~lv~ 208 (304)
T 3bwc_A 163 RQTPDNTYDVVIIDTTDPAGPASKL-----------------------F-----------GEAFYKDVLRILKPDGICCN 208 (304)
T ss_dssp HSSCTTCEEEEEEECC--------------------------------C-----------CHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCceeEEEECCCCccccchhh-----------------------h-----------HHHHHHHHHHhcCCCcEEEE
Confidence 43 2348999999876542211000 0 02789999999999999999
Q ss_pred EeCCCC----cHHHHHHHHHHCCCeEEEEEehh
Q 043334 189 NMGGRP----GQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 189 ~~~~~~----~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
..+... ....+.+.+++.||..+..+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 209 QGESIWLDLELIEKMSRFIRETGFASVQYALMH 241 (304)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecCCcccchHHHHHHHHHHHhCCCCcEEEEEee
Confidence 876532 23445678888999988775544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.6e-12 Score=129.86 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=96.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .+++++++|+.++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--------------------~~~~~~~~d~~~~~ 102 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLP--------------------KEFSITEGDFLSFE 102 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSC--------------------TTCCEESCCSSSCC
T ss_pred CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCC--------------------CceEEEeCChhhcC
Confidence 5689999999999999999987 6899999999999999998762 36889999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. ++||+|+++-.....++ . ....+++++.++|||||.+++.
T Consensus 103 ~~--~~fD~v~~~~~l~~~~~------~------------------------------~~~~~l~~~~~~LkpgG~l~i~ 144 (220)
T 3hnr_A 103 VP--TSIDTIVSTYAFHHLTD------D------------------------------EKNVAIAKYSQLLNKGGKIVFA 144 (220)
T ss_dssp CC--SCCSEEEEESCGGGSCH------H------------------------------HHHHHHHHHHHHSCTTCEEEEE
T ss_pred CC--CCeEEEEECcchhcCCh------H------------------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 55 48999997633321110 0 0125899999999999999996
Q ss_pred eCCC------------------------------CcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGGR------------------------------PGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~------------------------------~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... .....++++++++||+++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 198 (220)
T 3hnr_A 145 DTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 (220)
T ss_dssp EECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEE
T ss_pred eccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEe
Confidence 4221 13456678899999987766
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.34 E-value=9.9e-12 Score=141.18 Aligned_cols=139 Identities=18% Similarity=0.137 Sum_probs=104.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc-ccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL-DEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl-~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|+..|++ + ++++++++|+.+.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~---------------~~v~~~~~D~~~~ 283 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDL---------------SKAEFVRDDVFKL 283 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCG---------------GGEEEEESCHHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCc---------------cceEEEECCHHHH
Confidence 57899999999999999999862 46999999999999999999999886 3 3799999999887
Q ss_pred ccC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 CRD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ~~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
... ...+||+|++|||+........ ......+..++.++.+.|+|||+
T Consensus 284 ~~~~~~~~~~fD~Ii~dpP~~~~~~~~~-----------------------------~~~~~~~~~~l~~~~~~LkpgG~ 334 (396)
T 3c0k_A 284 LRTYRDRGEKFDVIVMDPPKFVENKSQL-----------------------------MGACRGYKDINMLAIQLLNEGGI 334 (396)
T ss_dssp HHHHHHTTCCEEEEEECCSSTTTCSSSS-----------------------------SCCCTHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHhcCCCCCEEEECCCCCCCChhHH-----------------------------HHHHHHHHHHHHHHHHhcCCCcE
Confidence 432 1238999999999975433211 01112245789999999999999
Q ss_pred EEEEeCCCC-c----HHHHHHHHHHCCCeEEEE
Q 043334 186 MIFNMGGRP-G----QGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 186 ll~~~~~~~-~----~~~l~~ll~~~gf~~~~~ 213 (903)
+++...... . ...+++.+.+.|+....+
T Consensus 335 l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i 367 (396)
T 3c0k_A 335 LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI 367 (396)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 999766533 2 233445666777655443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-12 Score=146.26 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=110.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+|+..++ .+|+|+|+|+.+++.+++|+..+|+ .++.+.++|..++
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~----------------~nv~v~~~Da~~l 168 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV----------------SNAIVTNHAPAEL 168 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC----------------SSEEEECCCHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CceEEEeCCHHHh
Confidence 5789999999999999999998754 6999999999999999999999987 4799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|||+........-+.....+..+.. ..-......+++.+.++|||||++++
T Consensus 169 ~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~----------------~~l~~~Q~~iL~~a~~~LkpGG~LvY 232 (456)
T 3m4x_A 169 VPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESP----------------LYCQKRQQEILSSAIKMLKNKGQLIY 232 (456)
T ss_dssp HHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHH----------------HHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred hhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHH----------------HHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 53222389999999998643322111111111100000 01123445899999999999999998
Q ss_pred EeCC---CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG---RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~---~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+.+ ......+..++++++|+...+
T Consensus 233 sTCs~~~eEne~vv~~~l~~~~~~l~~~ 260 (456)
T 3m4x_A 233 STCTFAPEENEEIISWLVENYPVTIEEI 260 (456)
T ss_dssp EESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred EEeecccccCHHHHHHHHHhCCCEEEec
Confidence 5543 346677788899988665443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=126.59 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=94.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++ .+. ++++++++|+.++.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----~~~----------------~~~~~~~~d~~~~~ 103 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----HGL----------------DNVEFRQQDLFDWT 103 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----GCC----------------TTEEEEECCTTSCC
T ss_pred CCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----cCC----------------CCeEEEecccccCC
Confidence 5679999999999999999988 6799999999999999986 333 47999999998873
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|+++-.... +. ......+++++.++|||||.+++.
T Consensus 104 ~--~~~~D~v~~~~~l~~------~~------------------------------~~~~~~~l~~~~~~L~pgG~l~~~ 145 (218)
T 3ou2_A 104 P--DRQWDAVFFAHWLAH------VP------------------------------DDRFEAFWESVRSAVAPGGVVEFV 145 (218)
T ss_dssp C--SSCEEEEEEESCGGG------SC------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C--CCceeEEEEechhhc------CC------------------------------HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 2 348999997522211 11 011347899999999999999985
Q ss_pred eCC---------------------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGG---------------------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~---------------------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... ......+.+++++.||++...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 202 (218)
T 3ou2_A 146 DVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVD 202 (218)
T ss_dssp EECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred eCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEee
Confidence 321 124566788899999985544
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=128.61 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++.++ +.+|+|+|+++.+++.|++|+..++++ ++++++++|+.+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---------------~~v~~~~~d~~~~ 122 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQ---------------DKVTILNGASQDL 122 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---------------GGEEEEESCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCC---------------CceEEEECCHHHH
Confidence 468999999999999999998764 789999999999999999999888872 5799999998775
Q ss_pred ccCCC-----CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRDHD-----IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~~~-----~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
..... ++||+|+++.+.. .. .....+++.+ ++||||
T Consensus 123 l~~~~~~~~~~~fD~V~~d~~~~------~~--------------------------------~~~~~~~~~~-~~Lkpg 163 (221)
T 3u81_A 123 IPQLKKKYDVDTLDMVFLDHWKD------RY--------------------------------LPDTLLLEKC-GLLRKG 163 (221)
T ss_dssp GGGTTTTSCCCCCSEEEECSCGG------GH--------------------------------HHHHHHHHHT-TCCCTT
T ss_pred HHHHHHhcCCCceEEEEEcCCcc------cc--------------------------------hHHHHHHHhc-cccCCC
Confidence 43321 4899998642111 00 0112567777 999999
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHCC-CeEE
Q 043334 184 GIMIFNMGGRPGQGVCKRLFERRG-FRVD 211 (903)
Q Consensus 184 G~ll~~~~~~~~~~~l~~ll~~~g-f~~~ 211 (903)
|++++......+.....+.+++.. |...
T Consensus 164 G~lv~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (221)
T 3u81_A 164 TVLLADNVIVPGTPDFLAYVRGSSSFECT 192 (221)
T ss_dssp CEEEESCCCCCCCHHHHHHHHHCTTEEEE
T ss_pred eEEEEeCCCCcchHHHHHHHhhCCCceEE
Confidence 999996544444344445666554 4443
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.5e-12 Score=135.24 Aligned_cols=125 Identities=14% Similarity=0.101 Sum_probs=96.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++..+++ +++++++|+.+..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~-----------------~~~~~~~d~~~~~ 180 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENL-----------------NISTALYDINAAN 180 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----------------CEEEEECCGGGCC
T ss_pred CCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCC-----------------ceEEEEecccccc
Confidence 5689999999999999999987 67999999999999999999987764 7999999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|++|.++...+.. ....+++++.++|+|||.+++.
T Consensus 181 ~--~~~fD~i~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~LkpgG~l~i~ 222 (286)
T 3m70_A 181 I--QENYDFIVSTVVFMFLNRE------------------------------------RVPSIIKNMKEHTNVGGYNLIV 222 (286)
T ss_dssp C--CSCEEEEEECSSGGGSCGG------------------------------------GHHHHHHHHHHTEEEEEEEEEE
T ss_pred c--cCCccEEEEccchhhCCHH------------------------------------HHHHHHHHHHHhcCCCcEEEEE
Confidence 5 3489999988766532210 1237899999999999998774
Q ss_pred eC-------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG-------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~-------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. .......+++++.. |.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 223 AAMSTDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp EEBCCSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EecCCCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 32 12234455556643 777665
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-12 Score=146.17 Aligned_cols=151 Identities=11% Similarity=0.121 Sum_probs=108.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+|+..++ .+|+|+|+|+.+++.+++|+..+|+ . +.++++|+.++
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~----------------~-v~~~~~Da~~l 163 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA----------------P-LAVTQAPPRAL 163 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC----------------C-CEEECSCHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------e-EEEEECCHHHh
Confidence 5789999999999999999998764 6999999999999999999998887 4 89999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|||+....-....+.....+.++. -.........+++++.++|||||++++
T Consensus 164 ~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~----------------~~~l~~~Q~~iL~~a~~~LkpGG~Lvy 227 (464)
T 3m6w_A 164 AEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSA----------------PKRMAEVQKALLAQASRLLGPGGVLVY 227 (464)
T ss_dssp HHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTH----------------HHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred hhhccccCCEEEECCCcCCccccccChHHhhhcCHHH----------------HHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 5312238999999999964321111110000000000 001123346899999999999999998
Q ss_pred EeCC---CCcHHHHHHHHHHC-CCeEEEE
Q 043334 189 NMGG---RPGQGVCKRLFERR-GFRVDKL 213 (903)
Q Consensus 189 ~~~~---~~~~~~l~~ll~~~-gf~~~~~ 213 (903)
.+.+ ......+..++++. +|+...+
T Consensus 228 sTCs~~~eEne~vv~~~l~~~~~~~l~~~ 256 (464)
T 3m6w_A 228 STCTFAPEENEGVVAHFLKAHPEFRLEDA 256 (464)
T ss_dssp EESCCCGGGTHHHHHHHHHHCTTEEEECC
T ss_pred EeccCchhcCHHHHHHHHHHCCCcEEEec
Confidence 6543 34666777788887 5765543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-11 Score=126.28 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=90.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++..++.+|+|+|+|+.|++.+.++++.. .++.++.+|+.+.
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~------------------~~v~~~~~d~~~~ 117 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------------------NNIIPLLFDASKP 117 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------------------SSEEEECSCTTCG
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC------------------CCeEEEEcCCCCc
Confidence 4678999999999999999999876679999999999987776655422 3688999998774
Q ss_pred ---ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 109 ---CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 109 ---~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.... ++||+|++|.+.. . ....+++++.++|||||+
T Consensus 118 ~~~~~~~-~~fD~V~~~~~~~----------~------------------------------~~~~~l~~~~r~LkpgG~ 156 (210)
T 1nt2_A 118 WKYSGIV-EKVDLIYQDIAQK----------N------------------------------QIEILKANAEFFLKEKGE 156 (210)
T ss_dssp GGTTTTC-CCEEEEEECCCST----------T------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred hhhcccc-cceeEEEEeccCh----------h------------------------------HHHHHHHHHHHHhCCCCE
Confidence 1122 4899999872110 0 011458999999999999
Q ss_pred EEEEeC-----CCCcHHH-H-H--HHHHHCCCeEEEEEe
Q 043334 186 MIFNMG-----GRPGQGV-C-K--RLFERRGFRVDKLWQ 215 (903)
Q Consensus 186 ll~~~~-----~~~~~~~-l-~--~ll~~~gf~~~~~~~ 215 (903)
+++... .....+. . + +.+++. |++.+...
T Consensus 157 l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~~ 194 (210)
T 1nt2_A 157 VVIMVKARSIDSTAEPEEVFKSVLKEMEGD-FKIVKHGS 194 (210)
T ss_dssp EEEEEEHHHHCTTSCHHHHHHHHHHHHHTT-SEEEEEEE
T ss_pred EEEEEecCCccccCCHHHHHHHHHHHHHhh-cEEeeeec
Confidence 999742 2222222 2 1 237777 98887743
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.8e-12 Score=132.56 Aligned_cols=102 Identities=15% Similarity=0.236 Sum_probs=84.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.++++. ++++++++|+.++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~ 90 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---------------------PNTNFGKADLATW 90 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---------------------TTSEEEECCTTTC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------CCcEEEECChhhc
Confidence 4578999999999999999999988899999999999999999872 4789999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. . .++||+|++|......++ ...+++++.++|||||.+++
T Consensus 91 ~-~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 91 K-P-AQKADLLYANAVFQWVPD--------------------------------------HLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp C-C-SSCEEEEEEESCGGGSTT--------------------------------------HHHHHHHHGGGEEEEEEEEE
T ss_pred C-c-cCCcCEEEEeCchhhCCC--------------------------------------HHHHHHHHHHhcCCCeEEEE
Confidence 6 3 348999997644332111 23789999999999999999
Q ss_pred EeC
Q 043334 189 NMG 191 (903)
Q Consensus 189 ~~~ 191 (903)
...
T Consensus 131 ~~~ 133 (259)
T 2p35_A 131 QMP 133 (259)
T ss_dssp EEE
T ss_pred EeC
Confidence 764
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-11 Score=130.38 Aligned_cols=125 Identities=15% Similarity=0.073 Sum_probs=98.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+++|+++++++.|++|...+++ .+++++..+|+.+.
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~d~~~~ 152 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNL---------------GKNVKFFNVDFKDA 152 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTC---------------CTTEEEECSCTTTS
T ss_pred CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC---------------CCcEEEEEcChhhc
Confidence 36789999999999999999998 78999999999999999999987776 25799999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|++|+|.. . .+++++.++|+|||.+++
T Consensus 153 ~~~-~~~~D~v~~~~~~~------------~-------------------------------~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 153 EVP-EGIFHAAFVDVREP------------W-------------------------------HYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp CCC-TTCBSEEEECSSCG------------G-------------------------------GGHHHHHHHBCTTCEEEE
T ss_pred ccC-CCcccEEEECCcCH------------H-------------------------------HHHHHHHHHcCCCCEEEE
Confidence 522 23799999876611 0 457888999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
..+.......+.+.+++. |...+.+.
T Consensus 189 ~~~~~~~~~~~~~~l~~~-f~~~~~~~ 214 (248)
T 2yvl_A 189 LLPTANQVIKLLESIENY-FGNLEVVE 214 (248)
T ss_dssp EESSHHHHHHHHHHSTTT-EEEEEEEE
T ss_pred EeCCHHHHHHHHHHHHhh-CCcceEEE
Confidence 988654444445566666 77665543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-12 Score=132.34 Aligned_cols=131 Identities=18% Similarity=0.097 Sum_probs=100.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++..+ .+++++++|+.+.
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------------------~~~~~~~~d~~~~ 152 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------------------PVGKFILASMETA 152 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------------------SEEEEEESCGGGC
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC------------------CceEEEEccHHHC
Confidence 357899999999999999999876 568999999999999999887432 3799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++-.... +. .+....+++++.++|||||.+++
T Consensus 153 ~~~~-~~fD~v~~~~~l~~------~~------------------------------~~~~~~~l~~~~~~LkpgG~l~i 195 (254)
T 1xtp_A 153 TLPP-NTYDLIVIQWTAIY------LT------------------------------DADFVKFFKHCQQALTPNGYIFF 195 (254)
T ss_dssp CCCS-SCEEEEEEESCGGG------SC------------------------------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CCeEEEEEcchhhh------CC------------------------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 5433 48999996432211 10 01134789999999999999999
Q ss_pred EeCC---------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG---------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~---------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ......++++++++||++++...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 196 KENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp EEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred EecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 6531 12456778899999999988743
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.7e-12 Score=128.57 Aligned_cols=123 Identities=16% Similarity=0.279 Sum_probs=96.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc-
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY- 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~- 108 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ .++.+..+|+.+.
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------------------~~~~~~~~~~~~~~ 107 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA----------------------GAGEVHLASYAQLA 107 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT----------------------CSSCEEECCHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh----------------------cccccchhhHHhhc
Confidence 4589999999999999999987 67999999999999999876 1467888888776
Q ss_pred --ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 109 --CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 109 --~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
......+||+|+++..+. ..+ ...+++++.++|||||.+
T Consensus 108 ~~~~~~~~~fD~v~~~~~l~-~~~--------------------------------------~~~~l~~~~~~L~pgG~l 148 (227)
T 3e8s_A 108 EAKVPVGKDYDLICANFALL-HQD--------------------------------------IIELLSAMRTLLVPGGAL 148 (227)
T ss_dssp TTCSCCCCCEEEEEEESCCC-SSC--------------------------------------CHHHHHHHHHTEEEEEEE
T ss_pred ccccccCCCccEEEECchhh-hhh--------------------------------------HHHHHHHHHHHhCCCeEE
Confidence 333333699999875555 111 116799999999999999
Q ss_pred EEEeCCC-------------------------------CcHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMGGR-------------------------------PGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~~~-------------------------------~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++..... .....+.++++++||+++.+..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 149 VIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQE 208 (227)
T ss_dssp EEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEEC
T ss_pred EEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEEEec
Confidence 9965310 1457778999999999988743
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=129.14 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=94.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc-
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA- 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~- 107 (903)
.++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++|+..+ +++.++.+|+.+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------~~v~~~~~d~~~~ 134 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------------------ENIIPILGDANKP 134 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------------------TTEEEEECCTTCG
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC------------------CCeEEEECCCCCc
Confidence 4678999999999999999999877679999999999999999987433 379999999987
Q ss_pred ---cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 108 ---YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 108 ---~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.... ++||+|+.++|.. . ....+++++.++|||||
T Consensus 135 ~~~~~~~--~~~D~v~~~~~~~-----~-----------------------------------~~~~~l~~~~~~LkpgG 172 (230)
T 1fbn_A 135 QEYANIV--EKVDVIYEDVAQP-----N-----------------------------------QAEILIKNAKWFLKKGG 172 (230)
T ss_dssp GGGTTTS--CCEEEEEECCCST-----T-----------------------------------HHHHHHHHHHHHEEEEE
T ss_pred ccccccC--ccEEEEEEecCCh-----h-----------------------------------HHHHHHHHHHHhCCCCc
Confidence 3322 3899999543211 0 02267999999999999
Q ss_pred EEEEEeCC---CC-------cHHHHHHHHHHCCCeEEEEE
Q 043334 185 IMIFNMGG---RP-------GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~~~---~~-------~~~~l~~ll~~~gf~~~~~~ 214 (903)
.+++.... .. ....+. ++++.||+..+..
T Consensus 173 ~l~i~~~~~~~~~~~~~~~~~~~~l~-~l~~~Gf~~~~~~ 211 (230)
T 1fbn_A 173 YGMIAIKARSIDVTKDPKEIFKEQKE-ILEAGGFKIVDEV 211 (230)
T ss_dssp EEEEEEEGGGTCSSSCHHHHHHHHHH-HHHHHTEEEEEEE
T ss_pred EEEEEEecCCCCCCCCHHHhhHHHHH-HHHHCCCEEEEEE
Confidence 99995321 11 124445 7888899887764
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=9e-12 Score=142.24 Aligned_cols=158 Identities=16% Similarity=0.262 Sum_probs=108.1
Q ss_pred CcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCC
Q 043334 6 SIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQ 84 (903)
Q Consensus 6 ~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~ 84 (903)
.+|.|+.....+.+.+.. .++.+|||+|||+|.+++.+++.. +..+++|+|+++.+++.|
T Consensus 20 ~~~TP~~l~~~~~~~~~~-----~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------------- 80 (421)
T 2ih2_A 20 RVETPPEVVDFMVSLAEA-----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------------- 80 (421)
T ss_dssp -CCCCHHHHHHHHHHCCC-----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------------
T ss_pred eEeCCHHHHHHHHHhhcc-----CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC--------------
Confidence 357787555555554432 245699999999999999999876 568999999999999776
Q ss_pred CcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccc----hhhHHhhhhhhhhhhhccccccccccc
Q 043334 85 PIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDA----MSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 85 ~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~----l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
.+++++++|+.+.... ++||+|++||||........ +........... +..+
T Consensus 81 -----------~~~~~~~~D~~~~~~~--~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---- 136 (421)
T 2ih2_A 81 -----------PWAEGILADFLLWEPG--EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKA-------FSTW---- 136 (421)
T ss_dssp -----------TTEEEEESCGGGCCCS--SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHH-------CTTC----
T ss_pred -----------CCCcEEeCChhhcCcc--CCCCEEEECcCccCcccccccccccCHHHHHHHHHh-------hhcc----
Confidence 1588999999987543 38999999999987554211 112221110000 0000
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeCCC----CcHHHHHHHHHHCCC
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR----PGQGVCKRLFERRGF 208 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~----~~~~~l~~ll~~~gf 208 (903)
....+.+..+++.+.++|+|||.+++.++.. .....+++.+.+.++
T Consensus 137 --~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 137 --KGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREGK 186 (421)
T ss_dssp --CTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHSE
T ss_pred --cCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHHHHhcCC
Confidence 1123456689999999999999999987653 133455777777776
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=134.40 Aligned_cols=100 Identities=22% Similarity=0.314 Sum_probs=80.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++ ++.+|+|+|+|+.|++.|+++. +++.+.++|+.+++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 113 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY---------------------PHLHFDVADARNFR 113 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC---------------------TTSCEEECCTTTCC
T ss_pred CCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC---------------------CCCEEEECChhhCC
Confidence 568999999999999999998 5789999999999999998774 36889999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+ ++||+|+++......++ ...+++++.++|||||.+++.
T Consensus 114 ~~--~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~~~LkpgG~l~~~ 153 (279)
T 3ccf_A 114 VD--KPLDAVFSNAMLHWVKE--------------------------------------PEAAIASIHQALKSGGRFVAE 153 (279)
T ss_dssp CS--SCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--CCcCEEEEcchhhhCcC--------------------------------------HHHHHHHHHHhcCCCcEEEEE
Confidence 43 48999997643332111 226799999999999999996
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
...
T Consensus 154 ~~~ 156 (279)
T 3ccf_A 154 FGG 156 (279)
T ss_dssp EEC
T ss_pred ecC
Confidence 543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=133.10 Aligned_cols=111 Identities=18% Similarity=0.189 Sum_probs=85.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++ ..+++++++|+.+..
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 127 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKR---------------RFKVFFRAQDSYGRH 127 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCC---------------SSEEEEEESCTTTSC
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC---------------CccEEEEECCccccc
Confidence 6789999999999999998876 455999999999999999999876654 257999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+++-.... .. ........+++++.++|||||.+++.
T Consensus 128 ~~~~~~fD~v~~~~~l~~------~~----------------------------~~~~~~~~~l~~~~~~LkpgG~l~~~ 173 (298)
T 1ri5_A 128 MDLGKEFDVISSQFSFHY------AF----------------------------STSESLDIAQRNIARHLRPGGYFIMT 173 (298)
T ss_dssp CCCSSCEEEEEEESCGGG------GG----------------------------SSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCCCCcCEEEECchhhh------hc----------------------------CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 423348999997522110 00 01122347899999999999999986
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 174 ~ 174 (298)
T 1ri5_A 174 V 174 (298)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-11 Score=140.29 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=101.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+..|+++ ++++++++|+.+..
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~---------------~~v~~~~~d~~~~~ 280 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVE---------------DRMKFIVGSAFEEM 280 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCG---------------GGEEEEESCHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCC---------------ccceEEECCHHHHH
Confidence 5789999999999999999986 4459999999999999999999999872 37999999998764
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.. ...+||+|++|||+....... . . .....+..++.++.+.|+|||.+
T Consensus 281 ~~~~~~~~~fD~Vi~dpP~~~~~~~~-~----~------------------------~~~~~~~~~l~~~~~~LkpgG~l 331 (396)
T 2as0_A 281 EKLQKKGEKFDIVVLDPPAFVQHEKD-L----K------------------------AGLRAYFNVNFAGLNLVKDGGIL 331 (396)
T ss_dssp HHHHHTTCCEEEEEECCCCSCSSGGG-H----H------------------------HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHH-H----H------------------------HHHHHHHHHHHHHHHhcCCCcEE
Confidence 32 123899999999998543211 1 1 11223558899999999999998
Q ss_pred EEEeCCC-CcHH----HHHHHHHHCCCeE
Q 043334 187 IFNMGGR-PGQG----VCKRLFERRGFRV 210 (903)
Q Consensus 187 l~~~~~~-~~~~----~l~~ll~~~gf~~ 210 (903)
++..... .... .+.+.+.+.|...
T Consensus 332 v~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 360 (396)
T 2as0_A 332 VTCSCSQHVDLQMFKDMIIAAGAKAGKFL 360 (396)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 8865543 3332 2334555666554
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.5e-12 Score=131.24 Aligned_cols=126 Identities=11% Similarity=0.062 Sum_probs=95.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.. ++.+|+|+|+|+.|++.+.+++..+ .+++++++|+.+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~------------------~~v~~~~~d~~~ 137 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR------------------TNIIPVIEDARH 137 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC------------------TTEEEECSCTTC
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc------------------CCeEEEEcccCC
Confidence 467899999999999999999987 4579999999999998888887654 379999999987
Q ss_pred cc--cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YC--RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~--~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.. ....++||+|++|+|. ++ . ...++.++.++|||||+
T Consensus 138 ~~~~~~~~~~~D~V~~~~~~---~~------~-------------------------------~~~~~~~~~~~LkpgG~ 177 (233)
T 2ipx_A 138 PHKYRMLIAMVDVIFADVAQ---PD------Q-------------------------------TRIVALNAHTFLRNGGH 177 (233)
T ss_dssp GGGGGGGCCCEEEEEECCCC---TT------H-------------------------------HHHHHHHHHHHEEEEEE
T ss_pred hhhhcccCCcEEEEEEcCCC---cc------H-------------------------------HHHHHHHHHHHcCCCeE
Confidence 42 1122489999998771 10 0 11568889999999999
Q ss_pred EEEEeCCC-----C-----cHHHHHHHHHHCCCeEEEE
Q 043334 186 MIFNMGGR-----P-----GQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 186 ll~~~~~~-----~-----~~~~l~~ll~~~gf~~~~~ 213 (903)
+++.+... . .... .+++++.||+..+.
T Consensus 178 l~i~~~~~~~~~~~~~~~~~~~~-~~~l~~~Gf~~~~~ 214 (233)
T 2ipx_A 178 FVISIKANCIDSTASAEAVFASE-VKKMQQENMKPQEQ 214 (233)
T ss_dssp EEEEEEHHHHCSSSCHHHHHHHH-HHTTGGGTEEEEEE
T ss_pred EEEEEcccccccCCCHHHHHHHH-HHHHHHCCCceEEE
Confidence 99965431 1 1112 36778889998775
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=132.69 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++|+... +++ .++++++.+|..+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~--------------~~rv~v~~~D~~~ 140 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLD--------------DPRVDVQVDDGFM 140 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTT--------------STTEEEEESCSHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccC--------------CCceEEEECcHHH
Confidence 468999999999999999988766789999999999999999987542 221 2589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
......++||+|++|+|....+..... ...+++++.++|+|||+++
T Consensus 141 ~l~~~~~~fD~Ii~d~~~~~~~~~~l~----------------------------------~~~~~~~~~~~L~pgG~lv 186 (275)
T 1iy9_A 141 HIAKSENQYDVIMVDSTEPVGPAVNLF----------------------------------TKGFYAGIAKALKEDGIFV 186 (275)
T ss_dssp HHHTCCSCEEEEEESCSSCCSCCCCCS----------------------------------TTHHHHHHHHHEEEEEEEE
T ss_pred HHhhCCCCeeEEEECCCCCCCcchhhh----------------------------------HHHHHHHHHHhcCCCcEEE
Confidence 654334589999999876432211000 0167899999999999999
Q ss_pred EEeCCCC-cHHH---HHHHHHHCCCeEEEEEehh
Q 043334 188 FNMGGRP-GQGV---CKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 188 ~~~~~~~-~~~~---l~~ll~~~gf~~~~~~~~~ 217 (903)
+..+... .... +.+.+++. |..+..+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~ 219 (275)
T 1iy9_A 187 AQTDNPWFTPELITNVQRDVKEI-FPITKLYTAN 219 (275)
T ss_dssp EECCCTTTCHHHHHHHHHHHHTT-CSEEEEEEEC
T ss_pred EEcCCccccHHHHHHHHHHHHHh-CCCeEEEEEe
Confidence 9876532 2222 23445554 7776665433
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=135.16 Aligned_cols=106 Identities=14% Similarity=0.102 Sum_probs=85.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .+++++.++|+.+.
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 152 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT---------------NRSRQVLLQGWEDF 152 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC---------------SSCEEEEESCGGGC
T ss_pred CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEECChHHC
Confidence 467899999999999999999887 57999999999999999999987766 25799999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ++||+|+++-.....+. +....+++++.++|||||.+++
T Consensus 153 ~----~~fD~v~~~~~l~~~~~------------------------------------~~~~~~l~~~~~~LkpgG~l~~ 192 (318)
T 2fk8_A 153 A----EPVDRIVSIEAFEHFGH------------------------------------ENYDDFFKRCFNIMPADGRMTV 192 (318)
T ss_dssp C----CCCSEEEEESCGGGTCG------------------------------------GGHHHHHHHHHHHSCTTCEEEE
T ss_pred C----CCcCEEEEeChHHhcCH------------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 3 38999997533221110 1133789999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 193 ~~ 194 (318)
T 2fk8_A 193 QS 194 (318)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-12 Score=130.77 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=102.1
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
++....++.+.. .++.+|||+|||+|.++..+++.+|+.+|+|+|+|+.|++.+.++++.+..
T Consensus 14 ~~~~~~~~~l~~-----~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~------------ 76 (218)
T 3mq2_A 14 EFSDAEFEQLRS-----QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA------------ 76 (218)
T ss_dssp ECCHHHHHHHHT-----TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG------------
T ss_pred ccCHHHHHHhhc-----cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh------------
Confidence 355555555552 256899999999999999999998889999999999999865444432110
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
....++++++++|+.+++.... . |.|+.+.++.. . ..++.++ ...
T Consensus 77 ~~~~~~v~~~~~d~~~l~~~~~-~-d~v~~~~~~~~------~---~~~~~~~------------------------~~~ 121 (218)
T 3mq2_A 77 KGGLPNLLYLWATAERLPPLSG-V-GELHVLMPWGS------L---LRGVLGS------------------------SPE 121 (218)
T ss_dssp GTCCTTEEEEECCSTTCCSCCC-E-EEEEEESCCHH------H---HHHHHTS------------------------SSH
T ss_pred hcCCCceEEEecchhhCCCCCC-C-CEEEEEccchh------h---hhhhhcc------------------------HHH
Confidence 0112489999999998765432 4 77765444321 0 0001000 027
Q ss_pred HHHHHhhcccCCcEEEEEeCCC--------------C----cHHHHHHHHHHCCCeEEEEE
Q 043334 172 AVEEGIGVIKPSGIMIFNMGGR--------------P----GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 172 ~l~~~~~~LkpgG~ll~~~~~~--------------~----~~~~l~~ll~~~gf~~~~~~ 214 (903)
+++++.++|||||.+++..+.. . ....+..++++.||++....
T Consensus 122 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 122 MLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEeccccccccccccccCCccchHHHHHHHHHHHHHcCCCceeee
Confidence 8999999999999999964311 1 12336678999999988763
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.6e-12 Score=135.67 Aligned_cols=105 Identities=11% Similarity=0.058 Sum_probs=83.5
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.++.+|||+|||+|.++..++.+.++.+|+|+|+|++|++.|++++...|+ ++++++++|+.+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl----------------~~v~~v~gDa~~ 183 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV----------------DGVNVITGDETV 183 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC----------------CSEEEEESCGGG
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC----------------CCeEEEECchhh
Confidence 3468999999999998765544455689999999999999999999987765 589999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+. . ++||+|+.+-- .+ ...++++++.++|||||+++
T Consensus 184 l~-d--~~FDvV~~~a~---~~--------------------------------------d~~~~l~el~r~LkPGG~Lv 219 (298)
T 3fpf_A 184 ID-G--LEFDVLMVAAL---AE--------------------------------------PKRRVFRNIHRYVDTETRII 219 (298)
T ss_dssp GG-G--CCCSEEEECTT---CS--------------------------------------CHHHHHHHHHHHCCTTCEEE
T ss_pred CC-C--CCcCEEEECCC---cc--------------------------------------CHHHHHHHHHHHcCCCcEEE
Confidence 75 2 38999984210 00 02378999999999999999
Q ss_pred EEeCC
Q 043334 188 FNMGG 192 (903)
Q Consensus 188 ~~~~~ 192 (903)
+....
T Consensus 220 v~~~~ 224 (298)
T 3fpf_A 220 YRTYT 224 (298)
T ss_dssp EEECC
T ss_pred EEcCc
Confidence 97643
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=129.28 Aligned_cols=126 Identities=18% Similarity=0.306 Sum_probs=97.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~-~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++... .+++++++|+.+.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~-------------------~~~~~~~~d~~~~ 101 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD-------------------TGITYERADLDKL 101 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS-------------------SSEEEEECCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc-------------------CCceEEEcChhhc
Confidence 5789999999999999999987 45 999999999999999877521 3689999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|+++......++ ...+++++.++|||||.+++
T Consensus 102 ~~~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~ 142 (243)
T 3bkw_A 102 HLP-QDSFDLAYSSLALHYVED--------------------------------------VARLFRTVHQALSPGGHFVF 142 (243)
T ss_dssp CCC-TTCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred cCC-CCCceEEEEeccccccch--------------------------------------HHHHHHHHHHhcCcCcEEEE
Confidence 543 348999997543332110 22789999999999999998
Q ss_pred EeCC-------C-------------------------------------CcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG-------R-------------------------------------PGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~-------~-------------------------------------~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... . .....+.++++++||+++....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 143 STEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp EEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred EeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 5421 0 1356678899999999988753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=136.93 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=97.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh--cccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL--NALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~--~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++++|||+|||+|.++..+++..+..+|+++|+|+++++.|++|+.. ++++ .++++++++|+.+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~--------------~~~v~~~~~D~~~ 181 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE--------------DKRVNVFIEDASK 181 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG--------------STTEEEEESCHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--------------CCcEEEEEccHHH
Confidence 46899999999999999999876778999999999999999999754 2221 2589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
......++||+|++|++....+. . . +. -..+++++.++|+|||+++
T Consensus 182 ~l~~~~~~fDvIi~d~~~p~~~~----~----~---------------l~-----------~~~~l~~~~~~LkpgG~lv 227 (321)
T 2pt6_A 182 FLENVTNTYDVIIVDSSDPIGPA----E----T---------------LF-----------NQNFYEKIYNALKPNGYCV 227 (321)
T ss_dssp HHHHCCSCEEEEEEECCCSSSGG----G----G---------------GS-----------SHHHHHHHHHHEEEEEEEE
T ss_pred HHhhcCCCceEEEECCcCCCCcc----h----h---------------hh-----------HHHHHHHHHHhcCCCcEEE
Confidence 64322348999999874221100 0 0 00 0278999999999999999
Q ss_pred EEeCCCC-cHHHHH---HHHHHCCCeEEEEEeh
Q 043334 188 FNMGGRP-GQGVCK---RLFERRGFRVDKLWQT 216 (903)
Q Consensus 188 ~~~~~~~-~~~~l~---~ll~~~gf~~~~~~~~ 216 (903)
+...... ....+. +.+++. |..+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~ 259 (321)
T 2pt6_A 228 AQCESLWIHVGTIKNMIGYAKKL-FKKVEYANI 259 (321)
T ss_dssp EEECCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred EEcCCcccCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 9876532 323333 334333 666665443
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-12 Score=141.38 Aligned_cols=78 Identities=23% Similarity=0.302 Sum_probs=67.3
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||+|||+|.+++.+|+. ..+|+|+|+|+.|++.|++|++.|++ ++++++++|+.+...
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~ng~----------------~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAANHI----------------DNVQIIRMAAEEFTQ 275 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHTTC----------------CSEEEECCCSHHHHH
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC----------------CceEEEECCHHHHHH
Confidence 578999999999999999875 57999999999999999999999987 489999999987642
Q ss_pred C--CC-------------CceeEEEECCCCC
Q 043334 111 D--HD-------------IQLERIVGCIPQI 126 (903)
Q Consensus 111 ~--~~-------------~~fD~Iv~NpPy~ 126 (903)
. .. .+||+|+.|||+.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS 306 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred HHhhccccccccccccccCCCCEEEECcCcc
Confidence 1 10 2799999999987
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=128.72 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=96.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|||+|||+|..+..+|+.. +..+|+|+|++++|++.+++++... .++..+.+|..
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~------------------~ni~~V~~d~~ 136 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR------------------RNIFPILGDAR 136 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC------------------TTEEEEESCTT
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh------------------cCeeEEEEecc
Confidence 4689999999999999999999987 4569999999999999998887433 37889999886
Q ss_pred cccc--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 107 AYCR--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 107 ~~~~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.... ....++|+|++..++.. ....++.++.+.|||||
T Consensus 137 ~p~~~~~~~~~vDvVf~d~~~~~----------------------------------------~~~~~l~~~~r~LKpGG 176 (233)
T 4df3_A 137 FPEKYRHLVEGVDGLYADVAQPE----------------------------------------QAAIVVRNARFFLRDGG 176 (233)
T ss_dssp CGGGGTTTCCCEEEEEECCCCTT----------------------------------------HHHHHHHHHHHHEEEEE
T ss_pred CccccccccceEEEEEEeccCCh----------------------------------------hHHHHHHHHHHhccCCC
Confidence 6532 22348999987654431 01267899999999999
Q ss_pred EEEEEeCCCC---------cHHHHHHHHHHCCCeEEEEE
Q 043334 185 IMIFNMGGRP---------GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~~~~~---------~~~~l~~ll~~~gf~~~~~~ 214 (903)
.+++...... ......+.+++.||+..+..
T Consensus 177 ~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e~i 215 (233)
T 4df3_A 177 YMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVV 215 (233)
T ss_dssp EEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEEEE
Confidence 9998542211 11122456888999987763
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-12 Score=134.70 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=83.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|.+|||||||+|..+..+++.. +.+|+|||+|+.+++.|+++....+. ++.++.+|+.+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~~~~~-----------------~~~~~~~~a~~~ 120 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQTH-----------------KVIPLKGLWEDV 120 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGGGCSS-----------------EEEEEESCHHHH
T ss_pred cCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHhhCCC-----------------ceEEEeehHHhh
Confidence 368899999999999999988764 46899999999999999999876653 789999998765
Q ss_pred ccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... .+++||.|+.++....... ........+++++.|+|||||+|+
T Consensus 121 ~~~~~~~~FD~i~~D~~~~~~~~---------------------------------~~~~~~~~~~~e~~rvLkPGG~l~ 167 (236)
T 3orh_A 121 APTLPDGHFDGILYDTYPLSEET---------------------------------WHTHQFNFIKNHAFRLLKPGGVLT 167 (236)
T ss_dssp GGGSCTTCEEEEEECCCCCBGGG---------------------------------TTTHHHHHHHHTHHHHEEEEEEEE
T ss_pred cccccccCCceEEEeeeecccch---------------------------------hhhcchhhhhhhhhheeCCCCEEE
Confidence 422 2348999986533221110 011223478999999999999998
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
|.
T Consensus 168 f~ 169 (236)
T 3orh_A 168 YC 169 (236)
T ss_dssp EC
T ss_pred EE
Confidence 84
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6.3e-12 Score=132.25 Aligned_cols=80 Identities=25% Similarity=0.284 Sum_probs=71.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+..++++ ++++++++|+.++.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~---------------~~~~~~~~d~~~~~ 140 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVYGIA---------------DKIEFICGDFLLLA 140 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCG---------------GGEEEEESCHHHHG
T ss_pred CCCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCC---------------cCeEEEECChHHhc
Confidence 5789999999999999999987 589999999999999999999888762 48999999999886
Q ss_pred cCCCCceeEEEECCCCCCC
Q 043334 110 RDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~ 128 (903)
.. ++||+|++||||...
T Consensus 141 ~~--~~~D~v~~~~~~~~~ 157 (241)
T 3gdh_A 141 SF--LKADVVFLSPPWGGP 157 (241)
T ss_dssp GG--CCCSEEEECCCCSSG
T ss_pred cc--CCCCEEEECCCcCCc
Confidence 43 389999999999853
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-11 Score=131.21 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++.++ +.+|+|+|+|+.+++.|++|+..+++ .++++++++|+.+.
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~---------------~~~v~~~~~d~~~~ 127 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV---------------DQRVTLREGPALQS 127 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEcCHHHH
Confidence 468999999999999999999887 78999999999999999999988887 35899999999875
Q ss_pred ccCC--CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 109 CRDH--DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 109 ~~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.... .++||+|+++.+.. .+..+++++.++|||||++
T Consensus 128 l~~~~~~~~fD~V~~d~~~~-----------------------------------------~~~~~l~~~~~~LkpGG~l 166 (248)
T 3tfw_A 128 LESLGECPAFDLIFIDADKP-----------------------------------------NNPHYLRWALRYSRPGTLI 166 (248)
T ss_dssp HHTCCSCCCCSEEEECSCGG-----------------------------------------GHHHHHHHHHHTCCTTCEE
T ss_pred HHhcCCCCCeEEEEECCchH-----------------------------------------HHHHHHHHHHHhcCCCeEE
Confidence 4332 23899999643200 0226799999999999999
Q ss_pred EEEeC
Q 043334 187 IFNMG 191 (903)
Q Consensus 187 l~~~~ 191 (903)
++...
T Consensus 167 v~~~~ 171 (248)
T 3tfw_A 167 IGDNV 171 (248)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 98543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.8e-11 Score=128.76 Aligned_cols=124 Identities=19% Similarity=0.156 Sum_probs=93.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++ ++++++|+.+.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~------------------------~~~~~~d~~~~ 93 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK------------------------FNVVKSDAIEY 93 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT------------------------SEEECSCHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh------------------------cceeeccHHHH
Confidence 46789999999999999999987 67899999999999998743 56888998875
Q ss_pred c-cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 C-RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~-~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
. ....++||+|+++-.....+ ...+..+++++.++|||||.++
T Consensus 94 ~~~~~~~~fD~i~~~~~l~~~~------------------------------------~~~~~~~l~~~~~~LkpgG~l~ 137 (240)
T 3dli_A 94 LKSLPDKYLDGVMISHFVEHLD------------------------------------PERLFELLSLCYSKMKYSSYIV 137 (240)
T ss_dssp HHTSCTTCBSEEEEESCGGGSC------------------------------------GGGHHHHHHHHHHHBCTTCCEE
T ss_pred hhhcCCCCeeEEEECCchhhCC------------------------------------cHHHHHHHHHHHHHcCCCcEEE
Confidence 3 22234899999742211100 0113378999999999999999
Q ss_pred EEeCCC------------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGGR------------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~~------------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+..... .....+.+++++.||+.+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 138 IESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp EEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred EEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 965422 244667889999999987764
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=138.93 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH-------hcccccCCCCcchhhhcccCCcEEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLY-------LNALDEKGQPIYDAEKKTLLDRVEFH 101 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~-------~~gl~~~~~~~~~~~~~~~~~~v~~~ 101 (903)
.++.+|||||||+|.+++.+|...+..+|+|||+++.++++|++|.. .+|+. .++++|+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~--------------~~rVefi 237 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK--------------HAEYTLE 237 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC--------------CCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC--------------CCCeEEE
Confidence 36789999999999999999987766679999999999999998753 23331 2589999
Q ss_pred EccccccccCCC-CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcc
Q 043334 102 ESDLLAYCRDHD-IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVI 180 (903)
Q Consensus 102 ~gDl~~~~~~~~-~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~L 180 (903)
++|+.+...... ..||+|++|++|+. + + ....+.+.++.|
T Consensus 238 ~GD~~~lp~~d~~~~aDVVf~Nn~~F~-p-------d-------------------------------l~~aL~Ei~RvL 278 (438)
T 3uwp_A 238 RGDFLSEEWRERIANTSVIFVNNFAFG-P-------E-------------------------------VDHQLKERFANM 278 (438)
T ss_dssp ECCTTSHHHHHHHHTCSEEEECCTTCC-H-------H-------------------------------HHHHHHHHHTTS
T ss_pred ECcccCCccccccCCccEEEEcccccC-c-------h-------------------------------HHHHHHHHHHcC
Confidence 999988754210 26999999988752 1 0 125577889999
Q ss_pred cCCcEEEEE
Q 043334 181 KPSGIMIFN 189 (903)
Q Consensus 181 kpgG~ll~~ 189 (903)
||||+|++.
T Consensus 279 KPGGrIVss 287 (438)
T 3uwp_A 279 KEGGRIVSS 287 (438)
T ss_dssp CTTCEEEES
T ss_pred CCCcEEEEe
Confidence 999999974
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.3e-12 Score=139.69 Aligned_cols=118 Identities=23% Similarity=0.408 Sum_probs=94.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.+++. ++ ++.+|+|+|+|+.+++.|++|+..|+++ ++++++++|+.+..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~---------------~~v~~~~~D~~~~~ 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLE---------------HKIIPILSDVREVD 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCT---------------TTEEEEESCGGGCC
T ss_pred CCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CcEEEEECChHHhc
Confidence 578999999999999999 87 4789999999999999999999999872 57999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
++||+|++|||+... .+++.+.++|+|||.+++.
T Consensus 257 ----~~fD~Vi~dpP~~~~------------------------------------------~~l~~~~~~L~~gG~l~~~ 290 (336)
T 2yx1_A 257 ----VKGNRVIMNLPKFAH------------------------------------------KFIDKALDIVEEGGVIHYY 290 (336)
T ss_dssp ----CCEEEEEECCTTTGG------------------------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred ----CCCcEEEECCcHhHH------------------------------------------HHHHHHHHHcCCCCEEEEE
Confidence 389999999998621 3477888999999998885
Q ss_pred eCCCCcHHHHHHHHHHC-CCeEEE
Q 043334 190 MGGRPGQGVCKRLFERR-GFRVDK 212 (903)
Q Consensus 190 ~~~~~~~~~l~~ll~~~-gf~~~~ 212 (903)
...... ....+.+++. ++....
T Consensus 291 ~~~~~~-~~~~~~l~~~~~~~i~~ 313 (336)
T 2yx1_A 291 TIGKDF-DKAIKLFEKKCDCEVLE 313 (336)
T ss_dssp EEESSS-HHHHHHHHHHSEEEEEE
T ss_pred EeecCc-hHHHHHHHHhcCCcEEE
Confidence 433333 3334566665 565443
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=130.95 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=82.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++ ..+ .+++++.++|+.++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~~~----------------~~~~~~~~~d~~~~ 98 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-AGV----------------DRKVQVVQADARAI 98 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-TTS----------------CTTEEEEESCTTSC
T ss_pred CCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-hcc----------------CCceEEEEcccccC
Confidence 46789999999999999999986 679999999999999999887 222 25799999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++-.+...++ ...+++++.++|||||.+++
T Consensus 99 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~ 139 (263)
T 2yqz_A 99 PLPD-ESVHGVIVVHLWHLVPD--------------------------------------WPKVLAEAIRVLKPGGALLE 139 (263)
T ss_dssp CSCT-TCEEEEEEESCGGGCTT--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CCeeEEEECCchhhcCC--------------------------------------HHHHHHHHHHHCCCCcEEEE
Confidence 5333 48999997533321110 22789999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 140 ~~ 141 (263)
T 2yqz_A 140 GW 141 (263)
T ss_dssp EE
T ss_pred Ee
Confidence 63
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=126.28 Aligned_cols=106 Identities=19% Similarity=0.156 Sum_probs=86.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++.++ +.+|+|+|+++.+++.|++|+...++ .++++++++|+.+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 122 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL---------------NDRVEVRTGLALDS 122 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEcCHHHH
Confidence 468999999999999999999887 68999999999999999999988876 25799999999775
Q ss_pred ccC----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 109 CRD----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 109 ~~~----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
... ..++||+|+++++.. .+..+++++.++|+|||
T Consensus 123 ~~~~~~~~~~~fD~v~~d~~~~-----------------------------------------~~~~~l~~~~~~L~pgG 161 (223)
T 3duw_A 123 LQQIENEKYEPFDFIFIDADKQ-----------------------------------------NNPAYFEWALKLSRPGT 161 (223)
T ss_dssp HHHHHHTTCCCCSEEEECSCGG-----------------------------------------GHHHHHHHHHHTCCTTC
T ss_pred HHHHHhcCCCCcCEEEEcCCcH-----------------------------------------HHHHHHHHHHHhcCCCc
Confidence 332 113799999654311 02267899999999999
Q ss_pred EEEEEeC
Q 043334 185 IMIFNMG 191 (903)
Q Consensus 185 ~ll~~~~ 191 (903)
.+++...
T Consensus 162 ~lv~~~~ 168 (223)
T 3duw_A 162 VIIGDNV 168 (223)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 9998644
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-10 Score=136.15 Aligned_cols=199 Identities=13% Similarity=0.178 Sum_probs=125.1
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHHHHHhcccccCC
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKW---LPSKVYGLDINPRAIRISWINLYLNALDEKG 83 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~---~~~~V~giDis~~al~~A~~n~~~~gl~~~~ 83 (903)
.|+|++-+..+.+.+..... ..++.+|+|.|||||.+.+.+++.. +..+++|+|+++.++++|+.|+..+|++
T Consensus 199 fyTP~~Vv~lmv~ll~~~~~-~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~--- 274 (542)
T 3lkd_A 199 FYTPQPVAKLMTQIAFLGRE-DKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP--- 274 (542)
T ss_dssp CCCCHHHHHHHHHHHHTTCT-TCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC---
T ss_pred ecccHHHHHHHHHHHhcccC-CCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC---
Confidence 67888655555555543211 2357899999999999999988874 3568999999999999999999988872
Q ss_pred CCcchhhhcccCCcEEEEEcccccc--ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 84 QPIYDAEKKTLLDRVEFHESDLLAY--CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 84 ~~~~~~~~~~~~~~v~~~~gDl~~~--~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
.+++.+.++|.+.. +.....+||+|++||||.......... .. +..| .++..+.
T Consensus 275 -----------~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~--~~---d~rf----~~~G~~~---- 330 (542)
T 3lkd_A 275 -----------IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGF--MD---DPRF----SPFGKLA---- 330 (542)
T ss_dssp -----------GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGG--GG---STTT----GGGSSCC----
T ss_pred -----------cCccceEecceecccccccccccccEEEecCCcCCccccchhh--hh---hhhh----hhhhhcC----
Confidence 13688999998875 322234899999999998543221100 00 0000 0000000
Q ss_pred ccccHHHHHHHHHHHhhccc-CCcEEEEEeCCC-----CcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcc-e
Q 043334 162 DQFGLGLIARAVEEGIGVIK-PSGIMIFNMGGR-----PGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDIS-A 234 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~Lk-pgG~ll~~~~~~-----~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~-~ 234 (903)
.. +...+ .|+..+.++|+ |||++.+.++.. .....+++.+-+.+.-. .++ ......|+ .+.+. .
T Consensus 331 ~~-s~~~~-~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~Lle~~~l~-~II-----~LP~~lF~-~t~i~t~ 401 (542)
T 3lkd_A 331 PK-SKADF-AFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKALLEEGAID-TVI-----GLPANIFF-NTSIPTT 401 (542)
T ss_dssp CT-TCCHH-HHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHHHHHTTCEE-EEE-----ECCSSCSS-SCCCCEE
T ss_pred CC-chhhH-HHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHHHHhCCcee-EEE-----EccccccC-CCCCcEE
Confidence 00 11111 68999999999 999998877642 12345566666665432 221 12334454 45555 4
Q ss_pred eeeeeccC
Q 043334 235 LVEIEKNS 242 (903)
Q Consensus 235 l~~~e~~~ 242 (903)
++.+.++.
T Consensus 402 Ilvl~K~k 409 (542)
T 3lkd_A 402 VIILKKNR 409 (542)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 56666654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=142.08 Aligned_cols=146 Identities=12% Similarity=0.145 Sum_probs=104.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+|+..+ ..+|+|+|+|+.+++.+++|+..+|+ .++.++++|+.++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~----------------~nv~~~~~D~~~~ 180 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI----------------SNVALTHFDGRVF 180 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC----------------CSEEEECCCSTTH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CcEEEEeCCHHHh
Confidence 578999999999999999999875 47999999999999999999998887 4799999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....++||+|++|||+.........+.....+.++. ...-..+...+++++.++|||||++++
T Consensus 181 ~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~----------------~~~l~~~q~~iL~~a~~~LkpGG~Lvy 244 (479)
T 2frx_A 181 GAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPES----------------NQEIAATQRELIDSAFHALRPGGTLVY 244 (479)
T ss_dssp HHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHH----------------HHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred hhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhH----------------HHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5312238999999999974221110000000000000 000112345889999999999999998
Q ss_pred EeCC---CCcHHHHHHHHHHCC
Q 043334 189 NMGG---RPGQGVCKRLFERRG 207 (903)
Q Consensus 189 ~~~~---~~~~~~l~~ll~~~g 207 (903)
.+.+ ......+..++++.+
T Consensus 245 sTcs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 245 STCTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp EESCCSSTTTHHHHHHHHHHST
T ss_pred ecccCCcccCHHHHHHHHHHCC
Confidence 6543 345666677888775
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=134.55 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=81.9
Q ss_pred HHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCC
Q 043334 17 FYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLD 96 (903)
Q Consensus 17 ~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~ 96 (903)
+++.|..... .+.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++ +
T Consensus 29 l~~~l~~~~~---~~~~vLDvGcGtG~~~~~l~~~--~~~v~gvD~s~~ml~~a~~~----------------------~ 81 (257)
T 4hg2_A 29 LFRWLGEVAP---ARGDALDCGCGSGQASLGLAEF--FERVHAVDPGEAQIRQALRH----------------------P 81 (257)
T ss_dssp HHHHHHHHSS---CSSEEEEESCTTTTTHHHHHTT--CSEEEEEESCHHHHHTCCCC----------------------T
T ss_pred HHHHHHHhcC---CCCCEEEEcCCCCHHHHHHHHh--CCEEEEEeCcHHhhhhhhhc----------------------C
Confidence 4444444333 4679999999999999999987 57999999999999887532 4
Q ss_pred cEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 97 RVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 97 ~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
++++.++|+.+++.+. ++||+|+++--++ .+. ..++++++
T Consensus 82 ~v~~~~~~~e~~~~~~-~sfD~v~~~~~~h------~~~---------------------------------~~~~~~e~ 121 (257)
T 4hg2_A 82 RVTYAVAPAEDTGLPP-ASVDVAIAAQAMH------WFD---------------------------------LDRFWAEL 121 (257)
T ss_dssp TEEEEECCTTCCCCCS-SCEEEEEECSCCT------TCC---------------------------------HHHHHHHH
T ss_pred CceeehhhhhhhcccC-CcccEEEEeeehh------Hhh---------------------------------HHHHHHHH
Confidence 7999999998876554 4899999742221 110 12679999
Q ss_pred hhcccCCcEEEEEeC
Q 043334 177 IGVIKPSGIMIFNMG 191 (903)
Q Consensus 177 ~~~LkpgG~ll~~~~ 191 (903)
.|+|||||+|++...
T Consensus 122 ~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 122 RRVARPGAVFAAVTY 136 (257)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHcCCCCEEEEEEC
Confidence 999999999987543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-12 Score=130.24 Aligned_cols=105 Identities=14% Similarity=0.143 Sum_probs=85.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++.++ +.+|+|+|+++.+++.|++++..+++ .++++++++|+.+.
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 128 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL---------------SDKIGLRLSPAKDT 128 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC---------------CCceEEEeCCHHHH
Confidence 467999999999999999999877 78999999999999999999988877 25799999999776
Q ss_pred ccCCC-----CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRDHD-----IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~~~-----~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
..... ++||+|+.+++.. .+..+++++.++||||
T Consensus 129 ~~~~~~~~~~~~fD~v~~~~~~~-----------------------------------------~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 129 LAELIHAGQAWQYDLIYIDADKA-----------------------------------------NTDLYYEESLKLLREG 167 (225)
T ss_dssp HHHHHTTTCTTCEEEEEECSCGG-----------------------------------------GHHHHHHHHHHHEEEE
T ss_pred HHHhhhccCCCCccEEEECCCHH-----------------------------------------HHHHHHHHHHHhcCCC
Confidence 33210 4899999665310 0226789999999999
Q ss_pred cEEEEEe
Q 043334 184 GIMIFNM 190 (903)
Q Consensus 184 G~ll~~~ 190 (903)
|++++..
T Consensus 168 G~lv~~~ 174 (225)
T 3tr6_A 168 GLIAVDN 174 (225)
T ss_dssp EEEEEEC
T ss_pred cEEEEeC
Confidence 9999854
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=127.19 Aligned_cols=104 Identities=19% Similarity=0.131 Sum_probs=85.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++..+ +.+|+++|+|+.+++.|++|+...++ .++++++++|..+.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 120 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL---------------IDRVELQVGDPLGI 120 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG---------------GGGEEEEESCHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC---------------CceEEEEEecHHHH
Confidence 457999999999999999999877 78999999999999999999987776 25799999999876
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....+ ||+|+++.+.. .+..+++++.++|||||.+++
T Consensus 121 ~~~~~~-fD~v~~~~~~~-----------------------------------------~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 121 AAGQRD-IDILFMDCDVF-----------------------------------------NGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp HTTCCS-EEEEEEETTTS-----------------------------------------CHHHHHHHHGGGEEEEEEEEE
T ss_pred hccCCC-CCEEEEcCChh-----------------------------------------hhHHHHHHHHHhcCCCeEEEE
Confidence 444345 99999752210 022679999999999999998
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 159 ~~ 160 (210)
T 3c3p_A 159 VN 160 (210)
T ss_dssp ES
T ss_pred EC
Confidence 54
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-11 Score=133.18 Aligned_cols=105 Identities=14% Similarity=0.178 Sum_probs=85.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc-ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLN-ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~-gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++.+|||+|||+|..+..+++.+ ++.+|+|+|+|+.+++.|++++..+ +. .++++++++|+.+
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---------------~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT---------------YKNVSFKISSSDD 100 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C---------------CTTEEEEECCTTC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC---------------CCceEEEEcCHHh
Confidence 67899999999999999999876 7889999999999999999998765 22 2589999999988
Q ss_pred cccCC-----CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 108 YCRDH-----DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 108 ~~~~~-----~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
+.... .++||+|+++-..... ....+++++.++|||
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~---------------------------------------~~~~~l~~~~~~Lkp 141 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF---------------------------------------DFEKFQRSAYANLRK 141 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS---------------------------------------CHHHHHHHHHHHEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHh---------------------------------------CHHHHHHHHHHhcCC
Confidence 75443 1489999975322211 023789999999999
Q ss_pred CcEEEE
Q 043334 183 SGIMIF 188 (903)
Q Consensus 183 gG~ll~ 188 (903)
||.+++
T Consensus 142 gG~l~i 147 (299)
T 3g5t_A 142 DGTIAI 147 (299)
T ss_dssp EEEEEE
T ss_pred CcEEEE
Confidence 999988
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=129.71 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=86.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++..|+.+|+|+|+++.+++.|++++..+++ .++++++++|+.+..
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 118 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL---------------ESRIELLFGDALQLG 118 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC---------------TTTEEEECSCGGGSH
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEECCHHHHH
Confidence 46799999999999999999998888999999999999999999988776 257999999998753
Q ss_pred cCC--CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RDH--DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
... .++||+|+++.+.. .+..+++.+.+.|+|||.++
T Consensus 119 ~~~~~~~~fD~I~~~~~~~-----------------------------------------~~~~~l~~~~~~L~pgG~lv 157 (233)
T 2gpy_A 119 EKLELYPLFDVLFIDAAKG-----------------------------------------QYRRFFDMYSPMVRPGGLIL 157 (233)
T ss_dssp HHHTTSCCEEEEEEEGGGS-----------------------------------------CHHHHHHHHGGGEEEEEEEE
T ss_pred HhcccCCCccEEEECCCHH-----------------------------------------HHHHHHHHHHHHcCCCeEEE
Confidence 221 23899999764421 02277999999999999999
Q ss_pred EEe
Q 043334 188 FNM 190 (903)
Q Consensus 188 ~~~ 190 (903)
+..
T Consensus 158 ~~~ 160 (233)
T 2gpy_A 158 SDN 160 (233)
T ss_dssp EET
T ss_pred EEc
Confidence 863
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=132.47 Aligned_cols=166 Identities=13% Similarity=0.089 Sum_probs=103.3
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCC-C---c-
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQ-P---I- 86 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~-~---~- 86 (903)
+|....+..+-.. ...++.+|||+|||+|.+++.++.. +..+|+|+|+|+.|++.|+++++.+... ... + +
T Consensus 39 ~~~~~~~~~~~~~--~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~-~d~s~~~~~~ 114 (263)
T 2a14_A 39 KFNLECLHKTFGP--GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGA-YDWTPAVKFA 114 (263)
T ss_dssp HHHHHHHHHHHST--TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTC-CCCHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCc-ccchHHHHHH
Confidence 4555444333221 1346789999999999888776654 2247999999999999999988654210 000 0 0
Q ss_pred chh-------h--hcccCCcEE-EEEcccccccc-C--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccc
Q 043334 87 YDA-------E--KKTLLDRVE-FHESDLLAYCR-D--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNY 153 (903)
Q Consensus 87 ~~~-------~--~~~~~~~v~-~~~gDl~~~~~-~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 153 (903)
.+. + .+....++. ++++|+.+..+ . ..++||+|+++--.. .+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~----------~i~-------------- 170 (263)
T 2a14_A 115 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME----------CAC-------------- 170 (263)
T ss_dssp HHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH----------HHC--------------
T ss_pred HhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHH----------Hhc--------------
Confidence 000 0 000112354 89999988422 1 134899999641111 000
Q ss_pred ccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeC--C-------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 154 CALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMG--G-------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 154 ~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~--~-------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
...+.+..++++++++|||||.|++... . ....+.+.+++++.||.+++...
T Consensus 171 ----------~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 171 ----------CSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp ----------SSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred ----------CCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 0012244789999999999999999531 1 13567788999999999887743
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.7e-11 Score=124.81 Aligned_cols=101 Identities=13% Similarity=0.290 Sum_probs=78.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++. ++++++++|+.+..
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 96 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL---------------------PDATLHQGDMRDFR 96 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC---------------------TTCEEEECCTTTCC
T ss_pred CCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC---------------------CCCEEEECCHHHcc
Confidence 57899999999999999999985 39999999999999998874 36899999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|++.. ....++ ...+....+++++.++|||||.+++.
T Consensus 97 ~--~~~~D~v~~~~-----~~~~~~-----------------------------~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 97 L--GRKFSAVVSMF-----SSVGYL-----------------------------KTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp C--SSCEEEEEECT-----TGGGGC-----------------------------CSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred c--CCCCcEEEEcC-----chHhhc-----------------------------CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4 34899999421 011111 01112347899999999999999985
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-11 Score=124.90 Aligned_cols=101 Identities=16% Similarity=0.153 Sum_probs=83.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..+++ +++++.++|+.+.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~ 137 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDL----------------HNVSTRHGDGWQG 137 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCGGGC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCC----------------CceEEEECCcccC
Confidence 36789999999999999999998 68999999999999999999988776 4799999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++.+... +.+++.+.|||||++++
T Consensus 138 ~~~~-~~~D~i~~~~~~~~--------------------------------------------~~~~~~~~L~pgG~lv~ 172 (210)
T 3lbf_A 138 WQAR-APFDAIIVTAAPPE--------------------------------------------IPTALMTQLDEGGILVL 172 (210)
T ss_dssp CGGG-CCEEEEEESSBCSS--------------------------------------------CCTHHHHTEEEEEEEEE
T ss_pred CccC-CCccEEEEccchhh--------------------------------------------hhHHHHHhcccCcEEEE
Confidence 5443 38999997632221 01246788999999999
Q ss_pred EeCC
Q 043334 189 NMGG 192 (903)
Q Consensus 189 ~~~~ 192 (903)
.++.
T Consensus 173 ~~~~ 176 (210)
T 3lbf_A 173 PVGE 176 (210)
T ss_dssp EECS
T ss_pred EEcC
Confidence 8876
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.4e-11 Score=136.75 Aligned_cols=152 Identities=13% Similarity=0.108 Sum_probs=107.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.+++|+..+|+ .+++++++|+.+.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~----------------~~v~~~~~D~~~~ 322 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI----------------KIVKPLVKDARKA 322 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC----------------CSEEEECSCTTCC
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC----------------CcEEEEEcChhhc
Confidence 5789999999999999999998766 7999999999999999999998887 4799999999887
Q ss_pred ccCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... +++||+|++|||+.........+.......++.. ..-..+...+++.+.++|||||.++
T Consensus 323 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~----------------~~l~~~q~~iL~~a~~~LkpGG~lv 386 (450)
T 2yxl_A 323 PEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKI----------------NEMSQLQRELLESAARLVKPGGRLL 386 (450)
T ss_dssp SSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSH----------------HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred chhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHH----------------HHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 5321 1479999999999743321111100000000000 0011223578999999999999999
Q ss_pred EEeCCC---CcHHHHHHHHHHC-CCeEEEE
Q 043334 188 FNMGGR---PGQGVCKRLFERR-GFRVDKL 213 (903)
Q Consensus 188 ~~~~~~---~~~~~l~~ll~~~-gf~~~~~ 213 (903)
+..... .....+...++++ +|+....
T Consensus 387 y~tcs~~~~ene~~v~~~l~~~~~~~~~~~ 416 (450)
T 2yxl_A 387 YTTCSIFKEENEKNIRWFLNVHPEFKLVPL 416 (450)
T ss_dssp EEESCCCGGGTHHHHHHHHHHCSSCEECCC
T ss_pred EEeCCCChhhHHHHHHHHHHhCCCCEEeec
Confidence 865543 2445667778876 6876543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-11 Score=136.61 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=85.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||+|.++..+++. +..+|+|+|+|+ |++.|++++..+++ .++++++++|+.+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~-~l~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 127 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSS-ISDYAVKIVKANKL---------------DHVVTIIKGKVEEV 127 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC---------------TTTEEEEESCTTTC
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHH-HHHHHHHHHHHcCC---------------CCcEEEEECcHHHc
Confidence 46789999999999999999987 556999999995 99999999998887 25799999999988
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+. ++||+|++|++........ ....+++++.++|||||++++
T Consensus 128 ~~~~-~~fD~Iis~~~~~~l~~~~-----------------------------------~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 128 ELPV-EKVDIIISEWMGYCLFYES-----------------------------------MLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCSS-SCEEEEEECCCBBTBTBTC-----------------------------------CHHHHHHHHHHHEEEEEEEES
T ss_pred cCCC-CceEEEEEccccccccCch-----------------------------------hHHHHHHHHHHhCCCCCEEcc
Confidence 5443 4899999986533211100 023678899999999999875
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=130.94 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=99.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc-c-cccCCCCcchhhhcccCCcEEEEEccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLN-A-LDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~-g-l~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
.++.+|||+|||+|.++..+++.. ++.+|+++|+++++++.|++|+..+ + + .+++++.++|+
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~---------------~~~v~~~~~d~ 162 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP---------------PDNWRLVVSDL 162 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC---------------CTTEEEECSCG
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC---------------CCcEEEEECch
Confidence 467899999999999999999865 4689999999999999999999776 4 2 25899999999
Q ss_pred cccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 106 LAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 106 ~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.+..... ++||+|++|+|.. ..+++++.++|+|||.
T Consensus 163 ~~~~~~~-~~~D~v~~~~~~~-------------------------------------------~~~l~~~~~~L~pgG~ 198 (280)
T 1i9g_A 163 ADSELPD-GSVDRAVLDMLAP-------------------------------------------WEVLDAVSRLLVAGGV 198 (280)
T ss_dssp GGCCCCT-TCEEEEEEESSCG-------------------------------------------GGGHHHHHHHEEEEEE
T ss_pred HhcCCCC-CceeEEEECCcCH-------------------------------------------HHHHHHHHHhCCCCCE
Confidence 8874332 3899999875511 0458889999999999
Q ss_pred EEEEeCCCCcHHHHHHHHHH-CCCeEEEEEe
Q 043334 186 MIFNMGGRPGQGVCKRLFER-RGFRVDKLWQ 215 (903)
Q Consensus 186 ll~~~~~~~~~~~l~~ll~~-~gf~~~~~~~ 215 (903)
+++..........+.+.+++ .+|...+.+.
T Consensus 199 l~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~ 229 (280)
T 1i9g_A 199 LMVYVATVTQLSRIVEALRAKQCWTEPRAWE 229 (280)
T ss_dssp EEEEESSHHHHHHHHHHHHHHSSBCCCEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCcCCcEEEE
Confidence 99988764433344455665 7887666543
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=121.84 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=85.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++|+. +++++++|+.++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------------------~~~~~~~d~~~~ 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------------------GVNFMVADVSEI 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------------------TSEEEECCGGGC
T ss_pred CCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------------------CCEEEECcHHHC
Confidence 36789999999999999999887 44589999999999999998862 588999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ++||+|++||||....... ...+++++.+.+ |+ +++
T Consensus 108 ~----~~~D~v~~~~p~~~~~~~~------------------------------------~~~~l~~~~~~~--g~-~~~ 144 (200)
T 1ne2_A 108 S----GKYDTWIMNPPFGSVVKHS------------------------------------DRAFIDKAFETS--MW-IYS 144 (200)
T ss_dssp C----CCEEEEEECCCC-------------------------------------------CHHHHHHHHHHE--EE-EEE
T ss_pred C----CCeeEEEECCCchhccCch------------------------------------hHHHHHHHHHhc--Cc-EEE
Confidence 3 3899999999998543210 015677888887 44 444
Q ss_pred EeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... .....+.+.+.+.| ....+
T Consensus 145 ~~~~-~~~~~~~~~~~~~g-~~~~~ 167 (200)
T 1ne2_A 145 IGNA-KARDFLRREFSARG-DVFRE 167 (200)
T ss_dssp EEEG-GGHHHHHHHHHHHE-EEEEE
T ss_pred EEcC-chHHHHHHHHHHCC-CEEEE
Confidence 4433 23455567888888 55544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-11 Score=138.01 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=77.5
Q ss_pred ccCCcccCc--chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 3 VIPSIFIPE--DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 3 ~~p~vfiP~--~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
+.|+.|... .-...+++.+.. ..++.+|||+|||+|.+++.+++. +.+|+|+|+|++|++.|++|+..|++
T Consensus 265 ~~~~~F~q~n~~~~e~l~~~~~~----~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl- 337 (425)
T 2jjq_A 265 IHPNSFFQTNSYQAVNLVRKVSE----LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNV- 337 (425)
T ss_dssp ECTTSCCCSBHHHHHHHHHHHHH----HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTC-
T ss_pred EccccccccCHHHHHHHHHHhhc----cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCC-
Confidence 456666642 223344444333 235789999999999999999986 67999999999999999999998887
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCC
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~ 126 (903)
+ ++++++|+.+.... +||+|++|||+.
T Consensus 338 ---------------~-v~~~~~d~~~~~~~---~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 338 ---------------D-AEFEVASDREVSVK---GFDTVIVDPPRA 364 (425)
T ss_dssp ---------------C-EEEEECCTTTCCCT---TCSEEEECCCTT
T ss_pred ---------------c-EEEEECChHHcCcc---CCCEEEEcCCcc
Confidence 4 99999999987533 799999999974
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=129.05 Aligned_cols=105 Identities=16% Similarity=0.187 Sum_probs=85.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++.++ +.+|+++|+|+.+++.|++|+...++ .++++++++|..+.
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~---------------~~~i~~~~gda~~~ 143 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV---------------DHKIDFREGPALPV 143 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC---------------GGGEEEEESCHHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCCeEEEECCHHHH
Confidence 467999999999999999999887 68999999999999999999988776 25899999999875
Q ss_pred ccCC------CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 109 CRDH------DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 109 ~~~~------~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
.... .++||+|+++.+.. .+..+++++.++|||
T Consensus 144 l~~l~~~~~~~~~fD~V~~d~~~~-----------------------------------------~~~~~l~~~~~~Lkp 182 (247)
T 1sui_A 144 LDEMIKDEKNHGSYDFIFVDADKD-----------------------------------------NYLNYHKRLIDLVKV 182 (247)
T ss_dssp HHHHHHSGGGTTCBSEEEECSCST-----------------------------------------THHHHHHHHHHHBCT
T ss_pred HHHHHhccCCCCCEEEEEEcCchH-----------------------------------------HHHHHHHHHHHhCCC
Confidence 3211 23899999652200 023678999999999
Q ss_pred CcEEEEEe
Q 043334 183 SGIMIFNM 190 (903)
Q Consensus 183 gG~ll~~~ 190 (903)
||++++..
T Consensus 183 GG~lv~d~ 190 (247)
T 1sui_A 183 GGVIGYDN 190 (247)
T ss_dssp TCCEEEEC
T ss_pred CeEEEEec
Confidence 99999854
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-11 Score=134.17 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++..+++ .++++++++|+.+.
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 244 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL---------------ADRVTVAEGDFFKP 244 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---------------TTTEEEEECCTTSC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCC---------------CCceEEEeCCCCCc
Confidence 3578999999999999999999998899999999 9999999999987776 35899999999874
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+ . .||+|+++...+..+ ......+++++.++|||||++++
T Consensus 245 ~~-~--~~D~v~~~~vl~~~~------------------------------------~~~~~~~l~~~~~~L~pgG~l~i 285 (374)
T 1qzz_A 245 LP-V--TADVVLLSFVLLNWS------------------------------------DEDALTILRGCVRALEPGGRLLV 285 (374)
T ss_dssp CS-C--CEEEEEEESCGGGSC------------------------------------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CC-C--CCCEEEEeccccCCC------------------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 32 2 599998753332111 01123789999999999998887
Q ss_pred EeC--C--C----------------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMG--G--R----------------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~--~--~----------------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... . . .....+++++++.||+.++..
T Consensus 286 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 337 (374)
T 1qzz_A 286 LDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 337 (374)
T ss_dssp EECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred EechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 433 1 1 245566788999999988774
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=127.63 Aligned_cols=104 Identities=18% Similarity=0.298 Sum_probs=83.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ++++++++|+.+..
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------------------~~~~~~~~d~~~~~ 110 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH--CKRLTVIDVMPRAIGRACQRTKRW------------------SHISWAATDILQFS 110 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG--EEEEEEEESCHHHHHHHHHHTTTC------------------SSEEEEECCTTTCC
T ss_pred CCCcEEEEcCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcccC------------------CCeEEEEcchhhCC
Confidence 5679999999999999999987 469999999999999999887432 37999999999887
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|+++......++ .+.+..+++++.++|||||.+++.
T Consensus 111 ~--~~~fD~v~~~~~l~~~~~-----------------------------------~~~~~~~l~~~~~~L~pgG~l~~~ 153 (216)
T 3ofk_A 111 T--AELFDLIVVAEVLYYLED-----------------------------------MTQMRTAIDNMVKMLAPGGHLVFG 153 (216)
T ss_dssp C--SCCEEEEEEESCGGGSSS-----------------------------------HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred C--CCCccEEEEccHHHhCCC-----------------------------------HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3 348999998643332111 112347899999999999999995
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 154 ~ 154 (216)
T 3ofk_A 154 S 154 (216)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=133.04 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=95.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh--cccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL--NALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~--~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+.+|||+|||+|.++..+++..+..+|+++|+|+.+++.|++|+.. ++++ .++++++++|+.+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~--------------~~~v~~~~~D~~~ 155 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD--------------DPRAEIVIANGAE 155 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG--------------CTTEEEEESCHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC--------------CCceEEEECcHHH
Confidence 45899999999999999999876678999999999999999998754 2221 2589999999988
Q ss_pred cccCCCCceeEEEECCCCC-CCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCRDHDIQLERIVGCIPQI-LNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~-~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
......++||+|++|+|.. ..+. . .+. ...+++++.++|+|||++
T Consensus 156 ~l~~~~~~fD~Ii~d~~~~~~~~~---------~--------------~l~-----------~~~~l~~~~~~LkpgG~l 201 (296)
T 1inl_A 156 YVRKFKNEFDVIIIDSTDPTAGQG---------G--------------HLF-----------TEEFYQACYDALKEDGVF 201 (296)
T ss_dssp HGGGCSSCEEEEEEEC---------------------------------CC-----------SHHHHHHHHHHEEEEEEE
T ss_pred HHhhCCCCceEEEEcCCCcccCch---------h--------------hhh-----------HHHHHHHHHHhcCCCcEE
Confidence 6443334899999987642 1100 0 000 127899999999999999
Q ss_pred EEEeCCCC-cHH---HHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMGGRP-GQG---VCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~~~~-~~~---~l~~ll~~~gf~~~~~~~ 215 (903)
++..+... ... .+.+.+++. |..+..+.
T Consensus 202 v~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 233 (296)
T 1inl_A 202 SAETEDPFYDIGWFKLAYRRISKV-FPITRVYL 233 (296)
T ss_dssp EEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred EEEccCcccCHHHHHHHHHHHHHH-CCceEEEE
Confidence 99876532 222 223344444 66655543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=132.86 Aligned_cols=133 Identities=14% Similarity=0.093 Sum_probs=95.4
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||||||+|.++..+++.+|+.+|+++|+|+.+++.|++++.... .++++++.+|..++...
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~----------------~~rv~v~~~Da~~~l~~ 154 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR----------------APRVKIRVDDARMVAES 154 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC----------------TTTEEEEESCHHHHHHT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC----------------CCceEEEECcHHHHHhh
Confidence 49999999999999999998888999999999999999999874321 25899999999887543
Q ss_pred C-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 112 H-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 112 ~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
. .++||+|+++.+....... .+ . ...+++.+.++|+|||++++..
T Consensus 155 ~~~~~fDvIi~D~~~~~~~~~-~L----~-----------------------------t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 155 FTPASRDVIIRDVFAGAITPQ-NF----T-----------------------------TVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp CCTTCEEEEEECCSTTSCCCG-GG----S-----------------------------BHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCCEEEECCCCccccch-hh----h-----------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 2 3489999987433211110 00 0 0278999999999999999987
Q ss_pred CCCCcHH---HHHHHHHHCCCeEEEEEe
Q 043334 191 GGRPGQG---VCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 191 ~~~~~~~---~l~~ll~~~gf~~~~~~~ 215 (903)
....... .+.+.+++. |..+..+.
T Consensus 201 ~~~~~~~~~~~~~~tL~~v-F~~v~~~~ 227 (317)
T 3gjy_A 201 GDHSDLRGAKSELAGMMEV-FEHVAVIA 227 (317)
T ss_dssp EECTTCHHHHHHHHHHHHH-CSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHH-CCceEEEE
Confidence 6443322 222334333 66655543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.4e-11 Score=120.48 Aligned_cols=118 Identities=22% Similarity=0.233 Sum_probs=91.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.++++. +++++..+| ...
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~---------------------~~v~~~~~d-~~~- 71 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKF---------------------DSVITLSDP-KEI- 71 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHC---------------------TTSEEESSG-GGS-
T ss_pred CCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhC---------------------CCcEEEeCC-CCC-
Confidence 56799999999999999999875 39999999999999999872 479999999 222
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
. .++||+|+++......++ ...+++++.+.|||||.+++.
T Consensus 72 -~-~~~~D~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 72 -P-DNSVDFILFANSFHDMDD--------------------------------------KQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp -C-TTCEEEEEEESCSTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred -C-CCceEEEEEccchhcccC--------------------------------------HHHHHHHHHHhcCCCCEEEEE
Confidence 2 238999998754443211 127799999999999999985
Q ss_pred eCC------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ......++++++ ||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 112 DWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp EECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred EcCccccccCchHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 321 124566777887 99988773
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=130.42 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=101.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.+|+.+++|+|++ .+++.|++++...++ .++++++.+|+.+..
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGV---------------ASRYHTIAGSAFEVD 228 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTC---------------GGGEEEEESCTTTSC
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCC---------------CcceEEEecccccCC
Confidence 5689999999999999999999888999999999 999999999987765 257999999998764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. .||+|+++-.... . ..+....+++++.+.|+|||++++.
T Consensus 229 ~~~--~~D~v~~~~~l~~------~------------------------------~~~~~~~~l~~~~~~L~pgG~l~i~ 270 (335)
T 2r3s_A 229 YGN--DYDLVLLPNFLHH------F------------------------------DVATCEQLLRKIKTALAVEGKVIVF 270 (335)
T ss_dssp CCS--CEEEEEEESCGGG------S------------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC--CCcEEEEcchhcc------C------------------------------CHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 332 5999986322211 1 1112337899999999999988874
Q ss_pred eCC--------------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG--------------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~--------------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ......+++++++.||+.+++.
T Consensus 271 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~ 321 (335)
T 2r3s_A 271 DFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLH 321 (335)
T ss_dssp ECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEE
T ss_pred eecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEE
Confidence 321 1235667889999999988873
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=134.42 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=87.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++|+... +++ .++++++++|+.+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~--------------~~rv~~~~~D~~~ 185 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE--------------DPRVNLVIGDGVA 185 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--------------STTEEEEESCHHH
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC--------------CCcEEEEECCHHH
Confidence 468999999999999999998766789999999999999999997642 331 2589999999988
Q ss_pred cccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+... ..++||+|++|++..... .... ....+++++.++|+|||++
T Consensus 186 ~l~~~~~~~fDlIi~d~~~p~~~-----~~~l-----------------------------~~~~~l~~~~~~LkpgG~l 231 (334)
T 1xj5_A 186 FLKNAAEGSYDAVIVDSSDPIGP-----AKEL-----------------------------FEKPFFQSVARALRPGGVV 231 (334)
T ss_dssp HHHTSCTTCEEEEEECCCCTTSG-----GGGG-----------------------------GSHHHHHHHHHHEEEEEEE
T ss_pred HHHhccCCCccEEEECCCCccCc-----chhh-----------------------------hHHHHHHHHHHhcCCCcEE
Confidence 6432 124899999986532100 0000 0137899999999999999
Q ss_pred EEEeCC
Q 043334 187 IFNMGG 192 (903)
Q Consensus 187 l~~~~~ 192 (903)
++..+.
T Consensus 232 v~~~~~ 237 (334)
T 1xj5_A 232 CTQAES 237 (334)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 997544
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.2e-11 Score=134.13 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||+|.++..+++. +..+|+|+|+|+ |++.|+++++.+++ .++++++++|+.+.
T Consensus 63 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 63 FKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLNKL---------------EDTITLIKGKIEEV 125 (340)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHTTC---------------TTTEEEEESCTTTS
T ss_pred cCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHcCC---------------CCcEEEEEeeHHHh
Confidence 46789999999999999999986 456999999997 99999999988886 35899999999887
Q ss_pred ccCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..+. ++||+|++|+ +|..... ..+..+++++.++|||||.++
T Consensus 126 ~~~~-~~~D~Ivs~~~~~~l~~~------------------------------------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 126 HLPV-EKVDVIISEWMGYFLLFE------------------------------------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCSC-SCEEEEEECCCBTTBTTT------------------------------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCC-CcEEEEEEcCchhhccCH------------------------------------HHHHHHHHHHHhhcCCCcEEE
Confidence 5442 3899999986 4543211 012367889999999999987
Q ss_pred E
Q 043334 188 F 188 (903)
Q Consensus 188 ~ 188 (903)
.
T Consensus 169 p 169 (340)
T 2fyt_A 169 P 169 (340)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.23 E-value=8.2e-11 Score=138.45 Aligned_cols=199 Identities=13% Similarity=0.179 Sum_probs=119.7
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC---------------CCEEEEEeCCHHHHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL---------------PSKVYGLDINPRAIRISW 71 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~---------------~~~V~giDis~~al~~A~ 71 (903)
.|+|+.-...+.+.+.. ...+|||.|||||.+.+.+++... ..+++|+|+++.++++|+
T Consensus 227 fyTP~~Vv~lmv~ll~p------~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 227 YYTPKSIVTLIVEMLEP------YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp TCCCHHHHHHHHHHHCC------CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHhc------CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 57887555555555432 123999999999999998766432 458999999999999999
Q ss_pred HHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCC-ccchhhHHhhhhhhhhhhhc
Q 043334 72 INLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPN-PDAMSKIITENASEEFLYSL 150 (903)
Q Consensus 72 ~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~-~~~l~~~~~~~~~~~~~~~l 150 (903)
.|+..+|++ .++.+.++|.+........+||+|++||||....- ...... +..+.+..
T Consensus 301 ~Nl~l~gi~---------------~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~------d~r~~~g~ 359 (544)
T 3khk_A 301 MNMVIRGID---------------FNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLAD------DPRWTINT 359 (544)
T ss_dssp HHHHHTTCC---------------CBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTT------CGGGEECC
T ss_pred HHHHHhCCC---------------cccceeccchhcCcccccccccEEEECCCcCCccccchhhhh------hhhhhcCc
Confidence 999998873 34555888877654333348999999999985321 111100 00010000
Q ss_pred cccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCC------CcHHHHHHHHHHCCCeEEEEEehhhhccCCC
Q 043334 151 SNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR------PGQGVCKRLFERRGFRVDKLWQTKILQASEP 224 (903)
Q Consensus 151 ~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~------~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~ 224 (903)
.+.... .+ ...+...+ .|++.+.+.|+|||++.+.++.. .....+++.+-+.+.-. .++. ....
T Consensus 360 ~~~~~~--~~-~~~~~~~~-~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~-aII~-----LP~~ 429 (544)
T 3khk_A 360 NGEKRI--LT-PPTGNANF-AWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVE-CMVA-----LPGQ 429 (544)
T ss_dssp C--CEE--CC-CCTTCTHH-HHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEE-EEEE-----CCTT
T ss_pred cccccc--cc-CCCcchhH-HHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCcHh-EEEE-----CCCC
Confidence 000000 00 00111112 68999999999999999877531 23455667776766432 2211 2234
Q ss_pred cccCCCCcc-eeeeeeccCC
Q 043334 225 FFASDTDIS-ALVEIEKNSP 243 (903)
Q Consensus 225 ~~~~~~~i~-~l~~~e~~~~ 243 (903)
.|. .+.+. .++.+.++.+
T Consensus 430 lF~-~t~i~t~Ilvl~K~k~ 448 (544)
T 3khk_A 430 LFT-NTQIPACIWFLTKDKN 448 (544)
T ss_dssp BCC-SCSSCEEEEEEESCCS
T ss_pred CCC-CCCCCeEEEEEecCCC
Confidence 444 45555 4566666543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=128.37 Aligned_cols=130 Identities=11% Similarity=0.001 Sum_probs=101.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .+++++..+|+.+..
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 232 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGL---------------SGRAQVVVGSFFDPL 232 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---------------TTTEEEEECCTTSCC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCc---------------CcCeEEecCCCCCCC
Confidence 467999999999999999999999999999999 9999999999977765 368999999998543
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
+ . +||+|+++-..+ .+ ..+...++++++++.|+|||++++.
T Consensus 233 p-~--~~D~v~~~~vlh-------------~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~ 273 (332)
T 3i53_A 233 P-A--GAGGYVLSAVLH-------------DW-----------------------DDLSAVAILRRCAEAAGSGGVVLVI 273 (332)
T ss_dssp C-C--SCSEEEEESCGG-------------GS-----------------------CHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred C-C--CCcEEEEehhhc-------------cC-----------------------CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 2 2 799998532111 11 1112347899999999999999884
Q ss_pred eCC---------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG---------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~---------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ......++++++++||+.++.+
T Consensus 274 e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 274 EAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp ECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 321 1235567889999999998874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=121.76 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.+++|+..+ ++++++++|+.+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~------------------~~v~~~~~d~~~ 133 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------------------RNIVPILGDATK 133 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------------------TTEEEEECCTTC
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc------------------CCCEEEEccCCC
Confidence 4678999999999999999998864 479999999999999999988533 379999999987
Q ss_pred cc--cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YC--RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~--~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
.. ....++||+|++++|.. + . ...+++++.++|||||.
T Consensus 134 ~~~~~~~~~~~D~v~~~~~~~---~--------~-----------------------------~~~~l~~~~~~LkpgG~ 173 (227)
T 1g8a_A 134 PEEYRALVPKVDVIFEDVAQP---T--------Q-----------------------------AKILIDNAEVYLKRGGY 173 (227)
T ss_dssp GGGGTTTCCCEEEEEECCCST---T--------H-----------------------------HHHHHHHHHHHEEEEEE
T ss_pred cchhhcccCCceEEEECCCCH---h--------H-----------------------------HHHHHHHHHHhcCCCCE
Confidence 42 11223799999887611 0 0 11458899999999999
Q ss_pred EEEEeCCC-----C-----cHHHHHHHHHHCCCeEEEEE
Q 043334 186 MIFNMGGR-----P-----GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 186 ll~~~~~~-----~-----~~~~l~~ll~~~gf~~~~~~ 214 (903)
+++..... . ....+.++ .+. |+..+..
T Consensus 174 l~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~-f~~~~~~ 210 (227)
T 1g8a_A 174 GMIAVKSRSIDVTKEPEQVFREVEREL-SEY-FEVIERL 210 (227)
T ss_dssp EEEEEEGGGTCTTSCHHHHHHHHHHHH-HTT-SEEEEEE
T ss_pred EEEEEecCCCCCCCChhhhhHHHHHHH-Hhh-ceeeeEe
Confidence 99854221 1 11333444 555 8887663
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-11 Score=126.45 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc--------------ccCCCCcchhhhccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL--------------DEKGQPIYDAEKKTL 94 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl--------------~~~~~~~~~~~~~~~ 94 (903)
.++.+|||+|||+|.++..+++... .+|+|+|+|+.|++.|++++..++. +.... ........+
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRM-KGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCS-CHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccccccc-chHHHHHHh
Confidence 4678999999999999999887632 4999999999999999998754320 00000 000000001
Q ss_pred CCcE-EEEEccccccccCCC---CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 95 LDRV-EFHESDLLAYCRDHD---IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 95 ~~~v-~~~~gDl~~~~~~~~---~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
..++ .++++|+.+...... ++||+|+++-... .+ . .......
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~------~~----~------------------------~~~~~~~ 178 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD------AA----C------------------------PDLPAYR 178 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH------HH----C------------------------SSHHHHH
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhh------hh----c------------------------CChHHHH
Confidence 1237 899999988643222 4899999641111 00 0 0112244
Q ss_pred HHHHHHhhcccCCcEEEEEeC---------------CCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 171 RAVEEGIGVIKPSGIMIFNMG---------------GRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~~~---------------~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.+++++.++|||||.+++... .....+.+.+++++.||+++....
T Consensus 179 ~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 179 TALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHhhCCCCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEE
Confidence 889999999999999998531 123566778899999999988754
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-11 Score=127.32 Aligned_cols=135 Identities=12% Similarity=0.139 Sum_probs=94.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|+++... .++++++++|+.+.
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~------------------~~~i~~~~~d~~~~ 101 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAH------------------VPQLRWETMDVRKL 101 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTT------------------CTTCEEEECCTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhccc------------------CCCcEEEEcchhcC
Confidence 3678999999999999999998742 3999999999999999988742 14799999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|++|+++.......... |............+++++.++|||||.+++
T Consensus 102 ~~~-~~~fD~v~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 157 (215)
T 2pxx_A 102 DFP-SASFDVVLEKGTLDALLAGERDP-----------------------WTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157 (215)
T ss_dssp CSC-SSCEEEEEEESHHHHHTTTCSCT-----------------------TSCCHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCC-CCcccEEEECcchhhhccccccc-----------------------cccccchhHHHHHHHHHHHHhCcCCCEEEE
Confidence 433 24899999876653211000000 000001123345889999999999999999
Q ss_pred EeCCCCcHHHHHHHHHHCCC
Q 043334 189 NMGGRPGQGVCKRLFERRGF 208 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf 208 (903)
....... ..+.++...++
T Consensus 158 ~~~~~~~--~~~~~~~~~~~ 175 (215)
T 2pxx_A 158 MTSAAPH--FRTRHYAQAYY 175 (215)
T ss_dssp EESCCHH--HHHHHHCCGGG
T ss_pred EeCCCcH--HHHHHHhcccc
Confidence 8766532 23456656665
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-11 Score=131.39 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh--cccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL--NALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~--~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++.. ++++ .++++++.+|..+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------------~~rv~v~~~Da~~ 160 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS--------------SSKLTLHVGDGFE 160 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG--------------CTTEEEEESCHHH
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC--------------CCcEEEEECcHHH
Confidence 56899999999999999999876678999999999999999998754 2331 2589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
......++||+|++|+|....+... .....+++++.++|+|||+++
T Consensus 161 ~l~~~~~~fD~Ii~d~~~~~~~~~~----------------------------------l~~~~~l~~~~~~LkpgG~lv 206 (304)
T 2o07_A 161 FMKQNQDAFDVIITDSSDPMGPAES----------------------------------LFKESYYQLMKTALKEDGVLC 206 (304)
T ss_dssp HHHTCSSCEEEEEEECC---------------------------------------------CHHHHHHHHHEEEEEEEE
T ss_pred HHhhCCCCceEEEECCCCCCCcchh----------------------------------hhHHHHHHHHHhccCCCeEEE
Confidence 6443345899999987653211100 001268999999999999999
Q ss_pred EEeCC
Q 043334 188 FNMGG 192 (903)
Q Consensus 188 ~~~~~ 192 (903)
+....
T Consensus 207 ~~~~~ 211 (304)
T 2o07_A 207 CQGEC 211 (304)
T ss_dssp EEEEC
T ss_pred EecCC
Confidence 97643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-11 Score=127.65 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=65.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHH------HHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPR------AIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH 101 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~------al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~ 101 (903)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+. +++.|++++..+++ .++++++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~---------------~~~v~~~ 106 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL---------------GDRLTVH 106 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT---------------GGGEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC---------------CCceEEE
Confidence 367899999999999999999986 4589999999997 99999999987765 2579999
Q ss_pred Ecc-cc--ccccCCCCceeEEEECCCCC
Q 043334 102 ESD-LL--AYCRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 102 ~gD-l~--~~~~~~~~~fD~Iv~NpPy~ 126 (903)
++| +. ..+.. .++||+|+++.++.
T Consensus 107 ~~d~~~~~~~~~~-~~~fD~v~~~~~l~ 133 (275)
T 3bkx_A 107 FNTNLSDDLGPIA-DQHFDRVVLAHSLW 133 (275)
T ss_dssp CSCCTTTCCGGGT-TCCCSEEEEESCGG
T ss_pred ECChhhhccCCCC-CCCEEEEEEccchh
Confidence 998 32 22222 24899999875554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=134.74 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=86.5
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++++|||+|||+|.+++.+++. +..+|+|+|+| .|++.|++++..+++ .++++++++|+.+
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNL---------------DHIVEVIEGSVED 123 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTC---------------TTTEEEEESCGGG
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCC---------------CCeEEEEECchhh
Confidence 457899999999999999999987 34499999999 999999999998887 3579999999998
Q ss_pred cccCCCCceeEEEECC-CCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCRDHDIQLERIVGCI-PQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~Np-Py~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+..+ ++||+|++|+ +|+..... ....+++++.++|||||.+
T Consensus 124 ~~~~--~~~D~Iv~~~~~~~l~~e~------------------------------------~~~~~l~~~~~~LkpgG~l 165 (376)
T 3r0q_C 124 ISLP--EKVDVIISEWMGYFLLRES------------------------------------MFDSVISARDRWLKPTGVM 165 (376)
T ss_dssp CCCS--SCEEEEEECCCBTTBTTTC------------------------------------THHHHHHHHHHHEEEEEEE
T ss_pred cCcC--CcceEEEEcChhhcccchH------------------------------------HHHHHHHHHHhhCCCCeEE
Confidence 8655 4899999986 34422110 0226788999999999999
Q ss_pred EE
Q 043334 187 IF 188 (903)
Q Consensus 187 l~ 188 (903)
++
T Consensus 166 i~ 167 (376)
T 3r0q_C 166 YP 167 (376)
T ss_dssp ES
T ss_pred EE
Confidence 87
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=126.03 Aligned_cols=105 Identities=12% Similarity=0.141 Sum_probs=85.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++.++ +.+|+++|+++.+++.|++++..+++ .++++++++|+.+.
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~---------------~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA---------------EHKIDLRLKPALET 133 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC---------------CCeEEEEEcCHHHH
Confidence 468999999999999999999876 67999999999999999999988876 25899999998765
Q ss_pred ccC---CC--CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRD---HD--IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~---~~--~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
... .. ++||+|+++++.. .+..+++++.++|+||
T Consensus 134 ~~~~~~~~~~~~~D~v~~d~~~~-----------------------------------------~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 134 LDELLAAGEAGTFDVAVVDADKE-----------------------------------------NCSAYYERCLQLLRPG 172 (229)
T ss_dssp HHHHHHTTCTTCEEEEEECSCST-----------------------------------------THHHHHHHHHHHEEEE
T ss_pred HHHHHhcCCCCCccEEEECCCHH-----------------------------------------HHHHHHHHHHHHcCCC
Confidence 321 11 3899999876511 0226789999999999
Q ss_pred cEEEEEe
Q 043334 184 GIMIFNM 190 (903)
Q Consensus 184 G~ll~~~ 190 (903)
|.+++..
T Consensus 173 G~lv~~~ 179 (229)
T 2avd_A 173 GILAVLR 179 (229)
T ss_dssp EEEEEEC
T ss_pred eEEEEEC
Confidence 9999853
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.22 E-value=1e-10 Score=137.86 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=117.7
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC------------------CCEEEEEeCCHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL------------------PSKVYGLDINPRAIR 68 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~------------------~~~V~giDis~~al~ 68 (903)
.|.|+.-...+.+.+.. .++.+|+|+|||||.+.+.+++... ..+++|+|+++.+++
T Consensus 151 fyTP~~iv~~mv~~l~p-----~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~ 225 (541)
T 2ar0_A 151 YFTPRPLIKTIIHLLKP-----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 225 (541)
T ss_dssp CCCCHHHHHHHHHHHCC-----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred eeCCHHHHHHHHHHhcc-----CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence 67887544444444432 2467999999999999999887642 247999999999999
Q ss_pred HHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhh
Q 043334 69 ISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLY 148 (903)
Q Consensus 69 ~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~ 148 (903)
+|+.|+..+|++.. ...++.+.++|.+........+||+|++||||........ .. .+
T Consensus 226 lA~~nl~l~gi~~~-----------~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~-----~~----~~-- 283 (541)
T 2ar0_A 226 LALMNCLLHDIEGN-----------LDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNI-----TR----TF-- 283 (541)
T ss_dssp HHHHHHHTTTCCCB-----------GGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCC-----CS----CC--
T ss_pred HHHHHHHHhCCCcc-----------ccccCCeEeCCCcccccccccCCeEEEECCCcccccchhh-----Hh----hc--
Confidence 99999998886200 0013778999987654322238999999999986543220 00 00
Q ss_pred hccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCC-----CcHHHHHHHHHHCCCeEEEEEehhhhccCC
Q 043334 149 SLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR-----PGQGVCKRLFERRGFRVDKLWQTKILQASE 223 (903)
Q Consensus 149 ~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~-----~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~ 223 (903)
+ + ..+ .....+++.+.+.|||||++.+.++.. .....+++.+.+.+ .+..++ ....
T Consensus 284 ---------~-~--~~~-~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~-~l~~ii-----~Lp~ 344 (541)
T 2ar0_A 284 ---------V-H--PTS-NKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTIL-----RLPT 344 (541)
T ss_dssp ---------S-S--CCS-CHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEE-----ECCS
T ss_pred ---------C-C--CCC-chHHHHHHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC-CEEEEE-----EcCc
Confidence 0 0 000 112278999999999999999976532 12234455555543 222221 1223
Q ss_pred CcccCCCCcc-eeeeeeccC
Q 043334 224 PFFASDTDIS-ALVEIEKNS 242 (903)
Q Consensus 224 ~~~~~~~~i~-~l~~~e~~~ 242 (903)
..|+ .+.+. .++.+.++.
T Consensus 345 ~~F~-~t~v~t~Ilvl~k~~ 363 (541)
T 2ar0_A 345 GIFY-AQGVKTNVLFFTKGT 363 (541)
T ss_dssp SCSS-SCSCCEEEEEEEEBC
T ss_pred Cccc-CCCCcEEEEEEECCC
Confidence 3443 44444 456666654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=139.39 Aligned_cols=245 Identities=10% Similarity=0.099 Sum_probs=137.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC---CCEEEEEeCCHHHHHHH--HHHHHhcccccCCCCcchhhhcccCCcEEEEEc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL---PSKVYGLDINPRAIRIS--WINLYLNALDEKGQPIYDAEKKTLLDRVEFHES 103 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~---~~~V~giDis~~al~~A--~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~g 103 (903)
.++.+|||+|||||.+.+.+++..+ ..+++|+|+++.+++.| +.|+..+++. .. .....+...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Ll-----------hG-i~~~~I~~d 387 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLV-----------SS-NNAPTITGE 387 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTC-----------BT-TBCCEEECC
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhh-----------cC-CCcceEEec
Confidence 3578999999999999999998764 35899999999999999 7776654331 00 012456677
Q ss_pred cccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 104 DLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 104 Dl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
|+.+......++||+||+||||.......... ... ...+...... .... .....+.+..|++.+.+.|+||
T Consensus 388 D~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~---kd~-~~r~~~g~p~---~p~s--~~G~~DLy~aFIe~Al~lLKpG 458 (878)
T 3s1s_A 388 DVCSLNPEDFANVSVVVMNPPYVSGVTDPAIK---RKF-AHKIIQLTGN---RPQT--LFGQIGVEALFLELVTELVQDG 458 (878)
T ss_dssp CGGGCCGGGGTTEEEEEECCBCCSSCCCHHHH---HHH-HHHHHHHHSS---CCSS--CSSSCCHHHHHHHHHHHHSCTT
T ss_pred chhcccccccCCCCEEEECCCccccccchhhh---hhH-HHHhhhhccc---cccc--cccccchHHHHHHHHHHhcCCC
Confidence 77764322234899999999998543321111 110 0000000000 0000 1122345678999999999999
Q ss_pred cEEEEEeCCCCc------HHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCc-ceeeeeeccCCc-ceeEEeccc--
Q 043334 184 GIMIFNMGGRPG------QGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDI-SALVEIEKNSPH-RFEFFMGLS-- 253 (903)
Q Consensus 184 G~ll~~~~~~~~------~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~e~~~~~-~f~f~~~~~-- 253 (903)
|++.+.++.... ...+++.+.+.+ .+..++. .....+|.+... ..++.+.++.+. ...|+....
T Consensus 459 GrLAfIlP~s~Lf~sg~~~kkLRk~LLe~~-~I~aIId-----LP~~~~F~~asv~T~ILIlrK~k~t~kV~FIdl~~pl 532 (878)
T 3s1s_A 459 TVISAIMPKQYLTAQGNESKAFREFLVGNF-GLEHIFL-----YPREGLFEEVIKDTVVFVGRKGSSVEEIEVLDSFTPL 532 (878)
T ss_dssp CEEEEEEETHHHHCCSHHHHHHHHHHTTTT-CEEEEEE-----CCBCCSSCSCBCCEEEEEEETTCCCSEEEEEEECSCG
T ss_pred cEEEEEEChHHhccCChHHHHHHHHHHhCC-CeEEEEE-----CCCccccCCCCCcEEEEEEEcCCCCCceEEEEcCCCc
Confidence 999998765321 334455554443 3323321 122234554443 345566665443 333333221
Q ss_pred -CCCcccHHHHHHhhhcCcceeee-eeeeeccccCchhHHHHHHHHhcccccccc
Q 043334 254 -GDLPICARTAWAYGKAGGRISHA-LSVYSCQLHQPNQVKKIFKFLKNGFHEISS 306 (903)
Q Consensus 254 -~~~p~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~ 306 (903)
...--..+.+|...+..+.|.+- +.+ +.....++...++.|++.+.+
T Consensus 533 ~~idl~~f~~al~~~k~~~~i~s~~~DL------~~~~~~~i~~~vk~G~~~~~~ 581 (878)
T 3s1s_A 533 EQVDLHNLKRALSNSSNEQIIQPMGMEL------RKEKREELENRVTVGWRHITS 581 (878)
T ss_dssp GGCCHHHHHHHHHHCCSSCCCCCTTEEE------EEEEHHHHHHTTTTCSGGGCS
T ss_pred ccccHHHHHHHHhhhccccccccccccc------ccccHHHHHHHhhhhhhhhhc
Confidence 11223345566666665544431 111 233455777777788876553
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.9e-11 Score=127.90 Aligned_cols=155 Identities=12% Similarity=0.105 Sum_probs=98.1
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeC-CHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDI-NPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDi-s~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
.+.+.+..... ..++++|||+|||+|.+++.+++. +..+|+|+|+ |+.|++.|++|+..|.....+. ...-
T Consensus 66 ~l~~~l~~~~~-~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~------~~~~ 137 (281)
T 3bzb_A 66 ALADTLCWQPE-LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSS------ETVK 137 (281)
T ss_dssp HHHHHHHHCGG-GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC---------------
T ss_pred HHHHHHHhcch-hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhccc------ccCC
Confidence 33444443321 246789999999999999998876 3449999999 8999999999995543210000 0000
Q ss_pred CCcEEEEEcccccc---ccC--CCCceeEEEE-CCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHH
Q 043334 95 LDRVEFHESDLLAY---CRD--HDIQLERIVG-CIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGL 168 (903)
Q Consensus 95 ~~~v~~~~gDl~~~---~~~--~~~~fD~Iv~-NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~ 168 (903)
.+++++...|+.+. ... ..++||+|++ ++.|... .
T Consensus 138 ~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~---------------------------------------~ 178 (281)
T 3bzb_A 138 RASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ---------------------------------------A 178 (281)
T ss_dssp -CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG---------------------------------------G
T ss_pred CCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChH---------------------------------------H
Confidence 13688886665432 110 1238999986 4444310 0
Q ss_pred HHHHHHHHhhccc---C--CcEEEEEeCCCC-----cHHHHHHHHHHCC-CeEEEEEehh
Q 043334 169 IARAVEEGIGVIK---P--SGIMIFNMGGRP-----GQGVCKRLFERRG-FRVDKLWQTK 217 (903)
Q Consensus 169 ~~~~l~~~~~~Lk---p--gG~ll~~~~~~~-----~~~~l~~ll~~~g-f~~~~~~~~~ 217 (903)
+..+++.+.++|+ | ||++++...... ....+.+.+++.| |.+..+....
T Consensus 179 ~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~ 238 (281)
T 3bzb_A 179 HDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPL 238 (281)
T ss_dssp HHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEEEEECCC
T ss_pred HHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEEEecccc
Confidence 2367899999999 9 998877544322 1223345788999 9998875443
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-10 Score=121.58 Aligned_cols=129 Identities=17% Similarity=0.111 Sum_probs=89.9
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|..+..+++..+ ..+|+|+|+++.|++...+.+... .++.++++|+.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r------------------~nv~~i~~Da~ 135 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR------------------PNIFPLLADAR 135 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC------------------TTEEEEECCTT
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc------------------CCeEEEEcccc
Confidence 45789999999999999999998764 569999999999986554443221 37999999997
Q ss_pred ccccC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 107 AYCRD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 107 ~~~~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.+... ..++||+|++|.+.. + . ...+.+.+.++|||||
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~~---~-------~------------------------------~~il~~~~~~~LkpGG 175 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQP---D-------Q------------------------------TDIAIYNAKFFLKVNG 175 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCCT---T-------H------------------------------HHHHHHHHHHHEEEEE
T ss_pred cchhhhccccceEEEEecCCCh---h-------H------------------------------HHHHHHHHHHhCCCCe
Confidence 65321 124899999875431 0 0 0123455666999999
Q ss_pred EEEEEeCCCC---------cHHHHHHHHHHCCCeEEEEE
Q 043334 185 IMIFNMGGRP---------GQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~~~~~---------~~~~l~~ll~~~gf~~~~~~ 214 (903)
++++.+.... ......+.+++.||++.+..
T Consensus 176 ~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~~ 214 (232)
T 3id6_C 176 DMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQII 214 (232)
T ss_dssp EEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEEE
T ss_pred EEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 9998642211 11223467888899988774
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=131.50 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=102.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .+++++..+|+.+.
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l---------------~~~v~~~~~d~~~~ 264 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGL---------------ADRCEILPGDFFET 264 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---------------TTTEEEEECCTTTC
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCc---------------CCceEEeccCCCCC
Confidence 3568999999999999999999999999999999 9999999999987765 36899999999854
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+. .||+|+++-..+. . ..+...++++++.+.|||||++++
T Consensus 265 ~p~---~~D~v~~~~vlh~------~------------------------------~d~~~~~~L~~~~~~L~pgG~l~i 305 (369)
T 3gwz_A 265 IPD---GADVYLIKHVLHD------W------------------------------DDDDVVRILRRIATAMKPDSRLLV 305 (369)
T ss_dssp CCS---SCSEEEEESCGGG------S------------------------------CHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCC---CceEEEhhhhhcc------C------------------------------CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 322 7999986422211 1 111123789999999999999998
Q ss_pred EeCC-----------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG-----------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~-----------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ......+++++++.||+.++++.
T Consensus 306 ~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 306 IDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp EEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 3211 12355677899999999988854
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.5e-11 Score=123.81 Aligned_cols=87 Identities=10% Similarity=-0.010 Sum_probs=68.6
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
+...||.....+-. +..+|||+|||+|.+++.++...|+.+|+|+|+|+.|++.+++|+..+|.+
T Consensus 35 ~ld~fY~~~~~~l~---~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~------------ 99 (200)
T 3fzg_A 35 TLNDFYTYVFGNIK---HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT------------ 99 (200)
T ss_dssp GHHHHHHHHHHHSC---CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS------------
T ss_pred hHHHHHHHHHhhcC---CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC------------
Confidence 55566666443322 467999999999999999999888899999999999999999999998872
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEE
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVG 121 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~ 121 (903)
.++.+ .|.....++ ++||+|+.
T Consensus 100 ---~~v~~--~d~~~~~~~--~~~DvVLa 121 (200)
T 3fzg_A 100 ---IKYRF--LNKESDVYK--GTYDVVFL 121 (200)
T ss_dssp ---SEEEE--ECCHHHHTT--SEEEEEEE
T ss_pred ---ccEEE--ecccccCCC--CCcChhhH
Confidence 35666 666555433 38999984
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=130.53 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++++|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++ .. ++. ........++++++.+|+.+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~-------~~~~~~~~~~v~~~~~D~~~ 145 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLL-------EAMLNGKHEKAKLTIGDGFE 145 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHH-------HHHHTTCCSSEEEEESCHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccc-------cccccCCCCcEEEEECchHH
Confidence 4689999999999999999987 7789999999999999999987 32 210 00000012589999999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... .++||+|++|+|....+... . ....+++.+.++|+|||+++
T Consensus 146 ~l~~-~~~fD~Ii~d~~~~~~~~~~-----l-----------------------------~~~~~l~~~~~~L~pgG~lv 190 (281)
T 1mjf_A 146 FIKN-NRGFDVIIADSTDPVGPAKV-----L-----------------------------FSEEFYRYVYDALNNPGIYV 190 (281)
T ss_dssp HHHH-CCCEEEEEEECCCCC----------T-----------------------------TSHHHHHHHHHHEEEEEEEE
T ss_pred Hhcc-cCCeeEEEECCCCCCCcchh-----h-----------------------------hHHHHHHHHHHhcCCCcEEE
Confidence 6433 34899999998753211000 0 01267899999999999999
Q ss_pred EEeCCC-CcHHHHH---HHHHHCCCeEEEEEe
Q 043334 188 FNMGGR-PGQGVCK---RLFERRGFRVDKLWQ 215 (903)
Q Consensus 188 ~~~~~~-~~~~~l~---~ll~~~gf~~~~~~~ 215 (903)
+..+.. .....++ +.+++. |..+..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~-f~~v~~~~ 221 (281)
T 1mjf_A 191 TQAGSVYLFTDELISAYKEMKKV-FDRVYYYS 221 (281)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHH-CSEEEEEE
T ss_pred EEcCCcccCHHHHHHHHHHHHHH-CCceEEEE
Confidence 976542 2223222 233333 66655543
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-10 Score=129.88 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=101.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++..+++ .++++++.+|+.+.
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 252 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGV---------------ADRMRGIAVDIYKE 252 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC---------------TTTEEEEECCTTTS
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCC---------------CCCEEEEeCccccC
Confidence 4578999999999999999999998899999999 9999999999987766 25799999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+.+ .+|+|+++-..... ..+....+++++.+.|||||++++
T Consensus 253 ~~~---~~D~v~~~~vlh~~------------------------------------~d~~~~~~l~~~~~~L~pgG~l~i 293 (359)
T 1x19_A 253 SYP---EADAVLFCRILYSA------------------------------------NEQLSTIMCKKAFDAMRSGGRLLI 293 (359)
T ss_dssp CCC---CCSEEEEESCGGGS------------------------------------CHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCC---CCCEEEEechhccC------------------------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 433 34999864222211 111234789999999999999976
Q ss_pred Ee---------------------C-C-C----CcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NM---------------------G-G-R----PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~---------------------~-~-~----~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. + . . .....++++++++||+.++..
T Consensus 294 ~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~ 346 (359)
T 1x19_A 294 LDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMV 346 (359)
T ss_dssp EEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEE
T ss_pred EecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEE
Confidence 33 1 1 1 345566788999999988774
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.3e-12 Score=133.11 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++..+ +.+|+|+|+++++++.|++|+..+++ .++++++++|+.+.
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~---------------~~~i~~~~gda~~~ 124 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ---------------EHKIKLRLGPALDT 124 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEcCHHHH
Confidence 467999999999999999999875 78999999999999999999988887 35899999999876
Q ss_pred ccCC-----CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRDH-----DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~~-----~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
.... .++||+|+++.+. . .+..+++++.++||||
T Consensus 125 l~~~~~~~~~~~fD~V~~d~~~--------------~---------------------------~~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 125 LHSLLNEGGEHQFDFIFIDADK--------------T---------------------------NYLNYYELALKLVTPK 163 (242)
T ss_dssp HHHHHHHHCSSCEEEEEEESCG--------------G---------------------------GHHHHHHHHHHHEEEE
T ss_pred HHHHhhccCCCCEeEEEEcCCh--------------H---------------------------HhHHHHHHHHHhcCCC
Confidence 4421 2489999865320 0 0226789999999999
Q ss_pred cEEEEE
Q 043334 184 GIMIFN 189 (903)
Q Consensus 184 G~ll~~ 189 (903)
|++++.
T Consensus 164 G~lv~d 169 (242)
T 3r3h_A 164 GLIAID 169 (242)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999995
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.6e-11 Score=133.25 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC--------------------------------------CEEEEEeCCHHHHHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP--------------------------------------SKVYGLDINPRAIRIS 70 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~--------------------------------------~~V~giDis~~al~~A 70 (903)
.++.+|||+|||||.+++.+|....+ .+|+|+|+|+.|++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 36789999999999999999887432 5799999999999999
Q ss_pred HHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCC
Q 043334 71 WINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 71 ~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~ 127 (903)
++|+..+|++ +++++.++|+.+...+. +||+||+||||..
T Consensus 274 r~Na~~~gl~---------------~~i~~~~~D~~~l~~~~--~~D~Iv~NPPyg~ 313 (385)
T 3ldu_A 274 RENAEIAGVD---------------EYIEFNVGDATQFKSED--EFGFIITNPPYGE 313 (385)
T ss_dssp HHHHHHHTCG---------------GGEEEEECCGGGCCCSC--BSCEEEECCCCCC
T ss_pred HHHHHHcCCC---------------CceEEEECChhhcCcCC--CCcEEEECCCCcC
Confidence 9999999872 47999999999986543 8999999999983
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.3e-11 Score=131.55 Aligned_cols=137 Identities=16% Similarity=0.122 Sum_probs=95.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++... +++ .++++++.+|+.+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~--------------~~rv~~~~~D~~~ 173 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS--------------HPKLDLFCGDGFE 173 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG--------------CTTEEEECSCHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC--------------CCCEEEEEChHHH
Confidence 457999999999999999998767789999999999999999987543 221 2589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHH-HHHHHHHhhcccCCcEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLI-ARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~-~~~l~~~~~~LkpgG~l 186 (903)
......++||+|++|++....+.. .++ ..+++++.++|+|||++
T Consensus 174 ~l~~~~~~fD~Ii~d~~~~~~~~~-----------------------------------~l~t~~~l~~~~~~LkpgG~l 218 (314)
T 2b2c_A 174 FLKNHKNEFDVIITDSSDPVGPAE-----------------------------------SLFGQSYYELLRDALKEDGIL 218 (314)
T ss_dssp HHHHCTTCEEEEEECCC------------------------------------------------HHHHHHHHEEEEEEE
T ss_pred HHHhcCCCceEEEEcCCCCCCcch-----------------------------------hhhHHHHHHHHHhhcCCCeEE
Confidence 643333489999988753211100 001 37899999999999999
Q ss_pred EEEeCCCC-cHHH---HHHHHHHCCCeEEEEEeh
Q 043334 187 IFNMGGRP-GQGV---CKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 187 l~~~~~~~-~~~~---l~~ll~~~gf~~~~~~~~ 216 (903)
++..+... .... +.+.+++. |..+..+..
T Consensus 219 v~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~~~ 251 (314)
T 2b2c_A 219 SSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQS 251 (314)
T ss_dssp EEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEE
T ss_pred EEECCCcccCHHHHHHHHHHHHHH-CCcceEEEE
Confidence 99875532 2222 22334443 666655433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=131.21 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC--------------------------------------CEEEEEeCCHHHHHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP--------------------------------------SKVYGLDINPRAIRIS 70 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~--------------------------------------~~V~giDis~~al~~A 70 (903)
.++..++|++||||.+++.+|....+ .+|+|+|+|+.|++.|
T Consensus 193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A 272 (384)
T 3ldg_A 193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA 272 (384)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence 35789999999999999998876543 4699999999999999
Q ss_pred HHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCC
Q 043334 71 WINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 71 ~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~ 127 (903)
++|+..+|++ +++++.++|+.+..... +||+||+||||..
T Consensus 273 r~Na~~~gl~---------------~~I~~~~~D~~~l~~~~--~fD~Iv~NPPYG~ 312 (384)
T 3ldg_A 273 RKNAREVGLE---------------DVVKLKQMRLQDFKTNK--INGVLISNPPYGE 312 (384)
T ss_dssp HHHHHHTTCT---------------TTEEEEECCGGGCCCCC--CSCEEEECCCCTT
T ss_pred HHHHHHcCCC---------------CceEEEECChHHCCccC--CcCEEEECCchhh
Confidence 9999999873 57999999999986543 8999999999974
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.8e-11 Score=125.08 Aligned_cols=108 Identities=16% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-----PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHES 103 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-----~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~g 103 (903)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.|++|+..++++.. ..++++++++
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-----------~~~~v~~~~~ 147 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-----------KIDNFKIIHK 147 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-----------SSTTEEEEEC
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-----------ccCCEEEEEC
Confidence 3678999999999999999999863 46999999999999999999987762000 0147999999
Q ss_pred cccccc----cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 104 DLLAYC----RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 104 Dl~~~~----~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
|+.+.. ... ++||+|+++.+.. .+++++.+.
T Consensus 148 d~~~~~~~~~~~~-~~fD~I~~~~~~~--------------------------------------------~~~~~~~~~ 182 (227)
T 2pbf_A 148 NIYQVNEEEKKEL-GLFDAIHVGASAS--------------------------------------------ELPEILVDL 182 (227)
T ss_dssp CGGGCCHHHHHHH-CCEEEEEECSBBS--------------------------------------------SCCHHHHHH
T ss_pred ChHhcccccCccC-CCcCEEEECCchH--------------------------------------------HHHHHHHHh
Confidence 998753 222 3799999764432 124567889
Q ss_pred ccCCcEEEEEeCC
Q 043334 180 IKPSGIMIFNMGG 192 (903)
Q Consensus 180 LkpgG~ll~~~~~ 192 (903)
|||||++++.++.
T Consensus 183 LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 183 LAENGKLIIPIEE 195 (227)
T ss_dssp EEEEEEEEEEEEE
T ss_pred cCCCcEEEEEEcc
Confidence 9999999998764
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=128.95 Aligned_cols=131 Identities=16% Similarity=0.124 Sum_probs=101.2
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .++++++.+|+.+...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 243 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDL---------------GGRVEFFEKNLLDARN 243 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTC---------------GGGEEEEECCTTCGGG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCC---------------CCceEEEeCCcccCcc
Confidence 78999999999999999999999999999999 8899999999887765 2579999999988751
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
...+.||+|+++-..+. + ..+....+++++.+.|||||++++..
T Consensus 244 ~~~~~~D~v~~~~vlh~-------------~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 244 FEGGAADVVMLNDCLHY-------------F-----------------------DAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp GTTCCEEEEEEESCGGG-------------S-----------------------CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cCCCCccEEEEeccccc-------------C-----------------------CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 11226999986422111 1 11123478999999999999998832
Q ss_pred C--------------------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 191 G--------------------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 191 ~--------------------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
. .......+++++++.||++++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 288 MTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp ECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred eccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 1 1224556788999999998874
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.1e-11 Score=133.08 Aligned_cols=130 Identities=12% Similarity=0.037 Sum_probs=99.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
...+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++++...++ .++++++.+|+.+..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~ 242 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSG---------------SERIHGHGANLLDRD 242 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTT---------------GGGEEEEECCCCSSS
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCc---------------ccceEEEEccccccC
Confidence 567999999999999999999999999999999 9999999999876665 258999999998852
Q ss_pred --cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 --RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 --~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.+ ++||+|+++-.... ...+....+++++.+.|||||+++
T Consensus 243 ~~~p--~~~D~v~~~~vlh~------------------------------------~~~~~~~~~l~~~~~~L~pgG~l~ 284 (363)
T 3dp7_A 243 VPFP--TGFDAVWMSQFLDC------------------------------------FSEEEVISILTRVAQSIGKDSKVY 284 (363)
T ss_dssp CCCC--CCCSEEEEESCSTT------------------------------------SCHHHHHHHHHHHHHHCCTTCEEE
T ss_pred CCCC--CCcCEEEEechhhh------------------------------------CCHHHHHHHHHHHHHhcCCCcEEE
Confidence 22 37999985321111 011123378999999999999998
Q ss_pred EEeCC-----------------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGG-----------------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~-----------------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.... ......++++++++||+.+++
T Consensus 285 i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~ 339 (363)
T 3dp7_A 285 IMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEI 339 (363)
T ss_dssp EEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCC
T ss_pred EEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEE
Confidence 83211 113556678899999988766
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.4e-11 Score=132.74 Aligned_cols=82 Identities=23% Similarity=0.266 Sum_probs=71.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC--------------------------------------CEEEEEeCCHHHHHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP--------------------------------------SKVYGLDINPRAIRIS 70 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~--------------------------------------~~V~giDis~~al~~A 70 (903)
.++..|||++||||.+++.+|....+ .+|+|+|+|+.|++.|
T Consensus 200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A 279 (393)
T 3k0b_A 200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA 279 (393)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence 35789999999999999998886543 4699999999999999
Q ss_pred HHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCC
Q 043334 71 WINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 71 ~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~ 127 (903)
++|+..+|++ +++++.++|+.+..... +||+|++||||..
T Consensus 280 r~Na~~~gl~---------------~~I~~~~~D~~~~~~~~--~fD~Iv~NPPYg~ 319 (393)
T 3k0b_A 280 KQNAVEAGLG---------------DLITFRQLQVADFQTED--EYGVVVANPPYGE 319 (393)
T ss_dssp HHHHHHTTCT---------------TCSEEEECCGGGCCCCC--CSCEEEECCCCCC
T ss_pred HHHHHHcCCC---------------CceEEEECChHhCCCCC--CCCEEEECCCCcc
Confidence 9999999873 57999999999986543 8999999999974
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=142.68 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=84.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++ .+..+|+|+|+|+ +++.|+++++.+++ .++++++++|+.+.
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~gl---------------~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSNNL---------------TDRIVVIPGKVEEV 219 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHTTC---------------TTTEEEEESCTTTC
T ss_pred cCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHcCC---------------CCcEEEEECchhhC
Confidence 3578999999999999999887 4567999999998 99999999998887 36899999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+ ++||+|++|++...... +.....+.++.++|||||.+++
T Consensus 220 ~~~--~~fD~Ivs~~~~~~~~~------------------------------------e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 220 SLP--EQVDIIISEPMGYMLFN------------------------------------ERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp CCS--SCEEEEECCCCHHHHTC------------------------------------HHHHHHHHHGGGGEEEEEEEES
T ss_pred ccC--CCeEEEEEeCchHhcCc------------------------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 433 38999999877321100 0012456788999999999986
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 262 ~~ 263 (480)
T 3b3j_A 262 TI 263 (480)
T ss_dssp CE
T ss_pred Ee
Confidence 44
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.7e-11 Score=122.53 Aligned_cols=104 Identities=19% Similarity=0.103 Sum_probs=83.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++..+++ +++++.++|+..
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~ 139 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY----------------DNVIVIVGDGTL 139 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC----------------TTEEEEESCGGG
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CCeEEEECCccc
Confidence 367899999999999999999987 347999999999999999999987776 469999999866
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... .++||+|+++.+... +.+++.+.|||||+++
T Consensus 140 ~~~~-~~~fD~v~~~~~~~~--------------------------------------------~~~~~~~~L~pgG~lv 174 (215)
T 2yxe_A 140 GYEP-LAPYDRIYTTAAGPK--------------------------------------------IPEPLIRQLKDGGKLL 174 (215)
T ss_dssp CCGG-GCCEEEEEESSBBSS--------------------------------------------CCHHHHHTEEEEEEEE
T ss_pred CCCC-CCCeeEEEECCchHH--------------------------------------------HHHHHHHHcCCCcEEE
Confidence 5432 237999997644331 1236788999999999
Q ss_pred EEeCCC
Q 043334 188 FNMGGR 193 (903)
Q Consensus 188 ~~~~~~ 193 (903)
+.++..
T Consensus 175 ~~~~~~ 180 (215)
T 2yxe_A 175 MPVGRY 180 (215)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 988764
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-11 Score=131.05 Aligned_cols=106 Identities=18% Similarity=0.269 Sum_probs=84.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.+++.+++. +..+|+|+|+| .|++.|++++..+++ .++++++++|+.+..
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~~~---------------~~~i~~~~~d~~~~~ 100 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELNGF---------------SDKITLLRGKLEDVH 100 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHTTC---------------TTTEEEEESCTTTSC
T ss_pred CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHcCC---------------CCCEEEEECchhhcc
Confidence 5689999999999999998886 45699999999 599999999988887 357999999998875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+. ++||+|+++++........ .+..++.++.++|||||.++.
T Consensus 101 ~~~-~~~D~Ivs~~~~~~l~~~~-----------------------------------~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 101 LPF-PKVDIIISEWMGYFLLYES-----------------------------------MMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CSS-SCEEEEEECCCBTTBSTTC-----------------------------------CHHHHHHHHHHHEEEEEEEES
T ss_pred CCC-CcccEEEEeCchhhcccHH-----------------------------------HHHHHHHHHHhhcCCCeEEEE
Confidence 442 3899999987643211100 022678888999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-11 Score=134.29 Aligned_cols=107 Identities=20% Similarity=0.275 Sum_probs=83.2
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++|++|||+|||||.+++.+|+. ++.+|+|+|.|+ |++.|+++++.||++ ++|+++++|+.+
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~-~~~~a~~~~~~n~~~---------------~~i~~i~~~~~~ 143 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASA-IWQQAREVVRFNGLE---------------DRVHVLPGPVET 143 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-THHHHHHHHHHTTCT---------------TTEEEEESCTTT
T ss_pred hcCCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChH-HHHHHHHHHHHcCCC---------------ceEEEEeeeeee
Confidence 357899999999999999987765 466999999996 899999999999983 689999999998
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...+. +||+||+++--.. +. +-..+..++....++|||||.++
T Consensus 144 ~~lpe--~~DvivsE~~~~~------l~-----------------------------~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 144 VELPE--QVDAIVSEWMGYG------LL-----------------------------HESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CCCSS--CEEEEECCCCBTT------BT-----------------------------TTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ecCCc--cccEEEeeccccc------cc-----------------------------ccchhhhHHHHHHhhCCCCceEC
Confidence 86553 8999997532111 00 00013366777889999999987
Q ss_pred E
Q 043334 188 F 188 (903)
Q Consensus 188 ~ 188 (903)
.
T Consensus 187 P 187 (376)
T 4hc4_A 187 P 187 (376)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-11 Score=125.61 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=85.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++..+ +.+|+++|+|+++++.|++|+...|+ .++++++++|..+.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~---------------~~~i~~~~gda~~~ 134 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV---------------EHKINFIESDAMLA 134 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC---------------GGGEEEEESCHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------------CCcEEEEEcCHHHH
Confidence 467999999999999999999877 68999999999999999999988876 25799999999875
Q ss_pred ccCC------CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 109 CRDH------DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 109 ~~~~------~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
.... .++||+|+.+.+. ..+..+++.+.++|+|
T Consensus 135 l~~l~~~~~~~~~fD~I~~d~~~-----------------------------------------~~~~~~l~~~~~~L~p 173 (237)
T 3c3y_A 135 LDNLLQGQESEGSYDFGFVDADK-----------------------------------------PNYIKYHERLMKLVKV 173 (237)
T ss_dssp HHHHHHSTTCTTCEEEEEECSCG-----------------------------------------GGHHHHHHHHHHHEEE
T ss_pred HHHHHhccCCCCCcCEEEECCch-----------------------------------------HHHHHHHHHHHHhcCC
Confidence 3211 2489999854210 0023678999999999
Q ss_pred CcEEEEEe
Q 043334 183 SGIMIFNM 190 (903)
Q Consensus 183 gG~ll~~~ 190 (903)
||.+++..
T Consensus 174 GG~lv~d~ 181 (237)
T 3c3y_A 174 GGIVAYDN 181 (237)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 99999864
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=134.07 Aligned_cols=149 Identities=14% Similarity=0.079 Sum_probs=105.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++..++.+|+|+|+|+.+++.+++|+..+|+ +++++++|+.+..
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-----------------~~~~~~~D~~~~~ 308 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-----------------KATVKQGDGRYPS 308 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-----------------CCEEEECCTTCTH
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-----------------CeEEEeCchhhch
Confidence 57899999999999999999988778999999999999999999988876 4789999998764
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||+|++|||+.........+.......+++ ......+...+++.+.++|||||++++
T Consensus 309 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~----------------~~~l~~~q~~~L~~a~~~LkpGG~lvy 372 (429)
T 1sqg_A 309 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRD----------------IPELAQLQSEILDAIWPHLKTGGTLVY 372 (429)
T ss_dssp HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTH----------------HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHH----------------HHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2 11237999999999975332211111000000000 001123345889999999999999999
Q ss_pred EeCCC---CcHHHHHHHHHHC-CCeEE
Q 043334 189 NMGGR---PGQGVCKRLFERR-GFRVD 211 (903)
Q Consensus 189 ~~~~~---~~~~~l~~ll~~~-gf~~~ 211 (903)
.+.+. .....+...++++ +|...
T Consensus 373 stcs~~~~ene~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 373 ATCSVLPEENSLQIKAFLQRTADAELC 399 (429)
T ss_dssp EESCCCGGGTHHHHHHHHHHCTTCEEC
T ss_pred EECCCChhhHHHHHHHHHHhCCCCEEe
Confidence 76433 3455666777776 57653
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.6e-11 Score=119.92 Aligned_cols=122 Identities=19% Similarity=0.187 Sum_probs=88.1
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.+...+++.+...+ ++.+|||+|||+|..+..++.. ++.+|+|+|+|+.|++.|++++..++
T Consensus 9 ~~~~~~~~~~~~~~----~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~------------- 70 (209)
T 2p8j_A 9 PQLYRFLKYCNESN----LDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENN------------- 70 (209)
T ss_dssp THHHHHHHHHHHSS----SCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHT-------------
T ss_pred hhHHHHHHHHhccC----CCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcC-------------
Confidence 34445555555443 4689999999999985544433 36799999999999999999986654
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
.+++++++|+.+..... ++||+|+++-.... +. ......
T Consensus 71 ----~~~~~~~~d~~~~~~~~-~~fD~v~~~~~l~~------~~------------------------------~~~~~~ 109 (209)
T 2p8j_A 71 ----FKLNISKGDIRKLPFKD-ESMSFVYSYGTIFH------MR------------------------------KNDVKE 109 (209)
T ss_dssp ----CCCCEEECCTTSCCSCT-TCEEEEEECSCGGG------SC------------------------------HHHHHH
T ss_pred ----CceEEEECchhhCCCCC-CceeEEEEcChHHh------CC------------------------------HHHHHH
Confidence 36889999998865433 38999997532221 10 012347
Q ss_pred HHHHHhhcccCCcEEEEEeCC
Q 043334 172 AVEEGIGVIKPSGIMIFNMGG 192 (903)
Q Consensus 172 ~l~~~~~~LkpgG~ll~~~~~ 192 (903)
+++++.++|||||.+++....
T Consensus 110 ~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 110 AIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp HHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEec
Confidence 899999999999999996543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-11 Score=129.45 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=91.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++ ++.+|+|+|+|+.|++.|+++. +++++++|+.+++
T Consensus 34 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~----------------------~~~~~~~d~~~~~ 89 (261)
T 3ege_A 34 KGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHP----------------------QVEWFTGYAENLA 89 (261)
T ss_dssp TTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCT----------------------TEEEECCCTTSCC
T ss_pred CCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhcc----------------------CCEEEECchhhCC
Confidence 578999999999999999997 4789999999999999876442 6999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.....++ ...+++++.++|| ||.+++.
T Consensus 90 ~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~Lk-gG~~~~~ 129 (261)
T 3ege_A 90 LPD-KSVDGVISILAIHHFSH--------------------------------------LEKSFQEMQRIIR-DGTIVLL 129 (261)
T ss_dssp SCT-TCBSEEEEESCGGGCSS--------------------------------------HHHHHHHHHHHBC-SSCEEEE
T ss_pred CCC-CCEeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHhC-CcEEEEE
Confidence 433 48999997533321110 2378999999999 9966663
Q ss_pred eCC-----------------------CCcHHHHHHHHHHCCCeEEEEEeh
Q 043334 190 MGG-----------------------RPGQGVCKRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~-----------------------~~~~~~l~~ll~~~gf~~~~~~~~ 216 (903)
... ......+. +++++||..+.....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~~ 178 (261)
T 3ege_A 130 TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIPF 178 (261)
T ss_dssp EECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEEC
T ss_pred EcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEEe
Confidence 221 11234456 899999988776433
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.3e-11 Score=122.01 Aligned_cols=109 Identities=19% Similarity=0.157 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|..+..+++..+ ..+|+|+|+++.+++.|++|+..++.+.+ ..+++++.++|+..
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-----------~~~~v~~~~~d~~~ 144 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-----------SSGRVQLVVGDGRM 144 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-----------HTSSEEEEESCGGG
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-----------CCCcEEEEECCccc
Confidence 4678999999999999999998863 36999999999999999999877542000 01479999999986
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..... ++||+|+++.+.. .+++++.+.|||||+++
T Consensus 145 ~~~~~-~~fD~i~~~~~~~--------------------------------------------~~~~~~~~~LkpgG~lv 179 (226)
T 1i1n_A 145 GYAEE-APYDAIHVGAAAP--------------------------------------------VVPQALIDQLKPGGRLI 179 (226)
T ss_dssp CCGGG-CCEEEEEECSBBS--------------------------------------------SCCHHHHHTEEEEEEEE
T ss_pred CcccC-CCcCEEEECCchH--------------------------------------------HHHHHHHHhcCCCcEEE
Confidence 54332 3799999765542 12456789999999999
Q ss_pred EEeCCC
Q 043334 188 FNMGGR 193 (903)
Q Consensus 188 ~~~~~~ 193 (903)
+.++..
T Consensus 180 ~~~~~~ 185 (226)
T 1i1n_A 180 LPVGPA 185 (226)
T ss_dssp EEESCT
T ss_pred EEEecC
Confidence 987653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=129.43 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+++.+++++|+ +.+++.|++++..+++ .++++++.+|+.+.
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~ 245 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL---------------SDRVDVVEGDFFEP 245 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC---------------TTTEEEEECCTTSC
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCC---------------CCceEEEeCCCCCC
Confidence 3568999999999999999999988899999999 9999999999987776 35899999999874
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+ . .||+|+++......+ ......+++++.++|||||++++
T Consensus 246 ~~-~--~~D~v~~~~vl~~~~------------------------------------~~~~~~~l~~~~~~L~pgG~l~i 286 (360)
T 1tw3_A 246 LP-R--KADAIILSFVLLNWP------------------------------------DHDAVRILTRCAEALEPGGRILI 286 (360)
T ss_dssp CS-S--CEEEEEEESCGGGSC------------------------------------HHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CC-C--CccEEEEcccccCCC------------------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 32 2 599998643322110 11123789999999999999887
Q ss_pred EeCC-------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG-------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~-------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ....+.++++++++||+.++...
T Consensus 287 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 287 HERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp EECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 5322 12345667889999999887743
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-11 Score=120.49 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+++.. .. ++++++++|+.+.
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-----------~~----------------~~v~~~~~D~~~~ 74 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-----------EI----------------AGVRFIRCDIFKE 74 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-----------CC----------------TTCEEEECCTTSS
T ss_pred CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-----------cC----------------CCeEEEEccccCH
Confidence 46889999999999999999987 7899999999741 11 4799999999875
Q ss_pred ccC-------C---CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhh
Q 043334 109 CRD-------H---DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIG 178 (903)
Q Consensus 109 ~~~-------~---~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~ 178 (903)
... . .++||+|++|++....... .. . ......+...+++.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~--~~---d----------------------~~~~~~l~~~~l~~a~~ 127 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIP--SR---D----------------------HAVSYQIGQRVMEIAVR 127 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCH--HH---H----------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCc--cc---C----------------------HHHHHHHHHHHHHHHHH
Confidence 310 0 0289999999754322110 00 0 01122345688999999
Q ss_pred cccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 179 VIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 179 ~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+|||||.|++.+........+...++. .|..+......
T Consensus 128 ~LkpGG~lv~k~~~~~~~~~~~~~l~~-~F~~v~~~kP~ 165 (191)
T 3dou_A 128 YLRNGGNVLLKQFQGDMTNDFIAIWRK-NFSSYKISKPP 165 (191)
T ss_dssp HEEEEEEEEEEEECSTHHHHHHHHHGG-GEEEEEEECC-
T ss_pred HccCCCEEEEEEcCCCCHHHHHHHHHH-hcCEEEEECCC
Confidence 999999999987766665555556644 58877765443
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=7.1e-11 Score=123.23 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC------CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP------SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~------~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
.++.+|||+|||+|.++..+++..+. .+|+|+|+++.+++.|++|+..++... -..+++++.+
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----------~~~~~v~~~~ 151 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-----------LDSGQLLIVE 151 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-----------HHHTSEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-----------cCCCceEEEE
Confidence 36789999999999999999987653 699999999999999999987665100 0014799999
Q ss_pred ccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 103 SDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 103 gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
+|..+.... .++||+|+++.+.. .+.+++.+.|||
T Consensus 152 ~d~~~~~~~-~~~fD~I~~~~~~~--------------------------------------------~~~~~~~~~Lkp 186 (227)
T 1r18_A 152 GDGRKGYPP-NAPYNAIHVGAAAP--------------------------------------------DTPTELINQLAS 186 (227)
T ss_dssp SCGGGCCGG-GCSEEEEEECSCBS--------------------------------------------SCCHHHHHTEEE
T ss_pred CCcccCCCc-CCCccEEEECCchH--------------------------------------------HHHHHHHHHhcC
Confidence 999884433 23899999764432 123567889999
Q ss_pred CcEEEEEeCC
Q 043334 183 SGIMIFNMGG 192 (903)
Q Consensus 183 gG~ll~~~~~ 192 (903)
||++++.++.
T Consensus 187 gG~lvi~~~~ 196 (227)
T 1r18_A 187 GGRLIVPVGP 196 (227)
T ss_dssp EEEEEEEESC
T ss_pred CCEEEEEEec
Confidence 9999998875
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=130.23 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=84.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+++++.|++++..+++ +++++.++|+.+
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~----------------~~v~~~~~d~~~ 137 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI----------------ENVIFVCGDGYY 137 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCGGG
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC----------------CCeEEEECChhh
Confidence 3678999999999999999999876 36899999999999999999988876 469999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..... ++||+|+++++.... .+++.+.|||||+++
T Consensus 138 ~~~~~-~~fD~Iv~~~~~~~~--------------------------------------------~~~~~~~LkpgG~lv 172 (317)
T 1dl5_A 138 GVPEF-SPYDVIFVTVGVDEV--------------------------------------------PETWFTQLKEGGRVI 172 (317)
T ss_dssp CCGGG-CCEEEEEECSBBSCC--------------------------------------------CHHHHHHEEEEEEEE
T ss_pred ccccC-CCeEEEEEcCCHHHH--------------------------------------------HHHHHHhcCCCcEEE
Confidence 54432 389999987654311 134667899999999
Q ss_pred EEeCC
Q 043334 188 FNMGG 192 (903)
Q Consensus 188 ~~~~~ 192 (903)
+..+.
T Consensus 173 i~~~~ 177 (317)
T 1dl5_A 173 VPINL 177 (317)
T ss_dssp EEBCB
T ss_pred EEECC
Confidence 98754
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-11 Score=123.89 Aligned_cols=104 Identities=20% Similarity=0.214 Sum_probs=82.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++|+..+++ .++++..+|+...
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~----------------~~v~~~~~d~~~~ 152 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGV----------------KNVHVILGDGSKG 152 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCGGGC
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC----------------CCcEEEECCcccC
Confidence 3578999999999999999999876 8999999999999999999988776 4699999998443
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... ..+||+|+++.+... +.+++.+.|||||++++
T Consensus 153 ~~~-~~~fD~Ii~~~~~~~--------------------------------------------~~~~~~~~L~pgG~lvi 187 (235)
T 1jg1_A 153 FPP-KAPYDVIIVTAGAPK--------------------------------------------IPEPLIEQLKIGGKLII 187 (235)
T ss_dssp CGG-GCCEEEEEECSBBSS--------------------------------------------CCHHHHHTEEEEEEEEE
T ss_pred CCC-CCCccEEEECCcHHH--------------------------------------------HHHHHHHhcCCCcEEEE
Confidence 322 226999997643321 12356789999999999
Q ss_pred EeCCCC
Q 043334 189 NMGGRP 194 (903)
Q Consensus 189 ~~~~~~ 194 (903)
.++...
T Consensus 188 ~~~~~~ 193 (235)
T 1jg1_A 188 PVGSYH 193 (235)
T ss_dssp EECSSS
T ss_pred EEecCC
Confidence 887643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=123.51 Aligned_cols=151 Identities=15% Similarity=0.095 Sum_probs=94.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc--------------ccCCCCcchhhhcccC
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL--------------DEKGQPIYDAEKKTLL 95 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl--------------~~~~~~~~~~~~~~~~ 95 (903)
++.+|||+|||+|..+..++. .++.+|+|+|+|+.|++.|++++....- ................
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 678999999999995554443 3467999999999999999987643210 0000000000000000
Q ss_pred CcEEEEEccccc-cccC----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 96 DRVEFHESDLLA-YCRD----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 96 ~~v~~~~gDl~~-~~~~----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
..++++++|+.+ .+.. ..++||+|++|-... .+ ........
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~------~~----------------------------~~~~~~~~ 195 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE------AV----------------------------SPDLASFQ 195 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH------HH----------------------------CSSHHHHH
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhh------hh----------------------------cCCHHHHH
Confidence 126788889987 3211 123699999752111 00 00112245
Q ss_pred HHHHHHhhcccCCcEEEEEe---------------CCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 171 RAVEEGIGVIKPSGIMIFNM---------------GGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~~---------------~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.+++++.++|||||.+++.. ........+++++++.||.++....
T Consensus 196 ~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 255 (289)
T 2g72_A 196 RALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLRT 255 (289)
T ss_dssp HHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEeeE
Confidence 88999999999999999841 1233567778999999999887753
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=129.73 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=85.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +..+|+|+|+|+ +++.|+++++.+++ .++++++++|+.+.
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~~l---------------~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSNNL---------------TDRIVVIPGKVEEV 111 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHTTC---------------TTTEEEEESCTTTC
T ss_pred CCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHcCC---------------CCcEEEEEcchhhC
Confidence 36789999999999999998885 456999999996 89999999988887 35899999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+ ++||+|+++++........ +...+.++.++|||||.+++
T Consensus 112 ~~~--~~~D~Ivs~~~~~~~~~~~------------------------------------~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 112 SLP--EQVDIIISEPMGYMLFNER------------------------------------MLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp CCS--SCEEEEEECCCBTTBTTTS------------------------------------HHHHHHHGGGGEEEEEEEES
T ss_pred CCC--CceeEEEEeCchhcCChHH------------------------------------HHHHHHHHHhhcCCCeEEEE
Confidence 544 3899999987754221100 11557788999999999986
Q ss_pred Ee
Q 043334 189 NM 190 (903)
Q Consensus 189 ~~ 190 (903)
..
T Consensus 154 ~~ 155 (348)
T 2y1w_A 154 TI 155 (348)
T ss_dssp CE
T ss_pred ec
Confidence 43
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-10 Score=116.60 Aligned_cols=129 Identities=17% Similarity=0.119 Sum_probs=87.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWL--PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~--~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.++.+|||+|||+|.++..+++..+ +.+|+|+|+++.+ .. ++++++++|+.
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~----------------~~v~~~~~d~~ 73 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI----------------PNVYFIQGEIG 73 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC----------------TTCEEEECCTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC----------------CCceEEEcccc
Confidence 3578999999999999999999887 5899999999831 11 36889999998
Q ss_pred ccc-------------------------cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 107 AYC-------------------------RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 107 ~~~-------------------------~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
+.. .. ..+||+|++|++...... .....
T Consensus 74 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~fD~v~~~~~~~~~g~-~~~d~------------------------- 126 (201)
T 2plw_A 74 KDNMNNIKNINYIDNMNNNSVDYKLKEILQ-DKKIDIILSDAAVPCIGN-KIDDH------------------------- 126 (201)
T ss_dssp TTSSCCC-----------CHHHHHHHHHHT-TCCEEEEEECCCCCCCSC-HHHHH-------------------------
T ss_pred chhhhhhccccccccccchhhHHHHHhhcC-CCcccEEEeCCCcCCCCC-cccCH-------------------------
Confidence 764 12 237999998864332111 00000
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.........+++++.++|||||.+++.+........+...++. .|..+..
T Consensus 127 -~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~~~l~~-~f~~v~~ 176 (201)
T 2plw_A 127 -LNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKG-MFQLVHT 176 (201)
T ss_dssp -HHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHHHHHHT-TEEEEEE
T ss_pred -HHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHHHHHHH-HHheEEE
Confidence 0011223468999999999999999976554444444555554 4666555
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=124.54 Aligned_cols=132 Identities=10% Similarity=0.074 Sum_probs=87.3
Q ss_pred CCCeEEEeCCccCHHHHHH----HHHhCCCEE--EEEeCCHHHHHHHHHHHHhc-ccccCCCCcchhhhcccCCcEEEEE
Q 043334 30 KDKTVAELGCGNGWITIAI----AEKWLPSKV--YGLDINPRAIRISWINLYLN-ALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~l----a~~~~~~~V--~giDis~~al~~A~~n~~~~-gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
++.+|||+|||+|.++..+ +..+++.+| +|+|+|++|++.|++++... +++ ..++.+..
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~--------------~v~~~~~~ 117 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLE--------------NVKFAWHK 117 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCT--------------TEEEEEEC
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCC--------------cceEEEEe
Confidence 5679999999999876543 334456655 99999999999999987543 221 01345567
Q ss_pred cccccccc-----CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 103 SDLLAYCR-----DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 103 gDl~~~~~-----~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
++..++.. ..+++||+|+++--....++ ...++++++
T Consensus 118 ~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d--------------------------------------~~~~l~~~~ 159 (292)
T 2aot_A 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--------------------------------------IPATLKFFH 159 (292)
T ss_dssp SCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHH
T ss_pred cchhhhhhhhccccCCCceeEEEEeeeeeecCC--------------------------------------HHHHHHHHH
Confidence 77765431 12348999986422221111 237899999
Q ss_pred hcccCCcEEEEEeCCC-----------------------CcHHHHHHHHHHCCCeEEEE
Q 043334 178 GVIKPSGIMIFNMGGR-----------------------PGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 178 ~~LkpgG~ll~~~~~~-----------------------~~~~~l~~ll~~~gf~~~~~ 213 (903)
++|||||.+++..... .....+.+++++.||+....
T Consensus 160 r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 160 SLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred HHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHCCCceEEE
Confidence 9999999999843211 23445567788888876553
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-10 Score=127.95 Aligned_cols=140 Identities=16% Similarity=0.184 Sum_probs=96.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh--cc-cccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL--NA-LDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~--~g-l~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.+++|||+|||+|.++..+++..+..+|+++|+|+.+++.|++++.. .+ ++ .++++++.+|+.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~--------------~~~v~~~~~D~~ 142 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFD--------------DPRAVLVIDDAR 142 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGG--------------CTTEEEEESCHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcccccc--------------CCceEEEEchHH
Confidence 46899999999999999999876778999999999999999998753 11 10 258999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+......++||+|+++++...... . .... + ....+++.+.++|||||++
T Consensus 143 ~~l~~~~~~fD~Ii~d~~~~~~~~-~-~~~~------------------l-----------~~~~~l~~~~~~LkpgG~l 191 (314)
T 1uir_A 143 AYLERTEERYDVVIIDLTDPVGED-N-PARL------------------L-----------YTVEFYRLVKAHLNPGGVM 191 (314)
T ss_dssp HHHHHCCCCEEEEEEECCCCBSTT-C-GGGG------------------G-----------SSHHHHHHHHHTEEEEEEE
T ss_pred HHHHhcCCCccEEEECCCCccccc-C-cchh------------------c-----------cHHHHHHHHHHhcCCCcEE
Confidence 864323348999999866532000 0 0000 0 0127899999999999999
Q ss_pred EEEeCCCC-----cHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMGGRP-----GQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~~~~-----~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++..+... ....+.+.+++. |..+..+.
T Consensus 192 v~~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~ 224 (314)
T 1uir_A 192 GMQTGMILLTHHRVHPVVHRTVREA-FRYVRSYK 224 (314)
T ss_dssp EEEEEEECC---CHHHHHHHHHHTT-CSEEEEEE
T ss_pred EEEccCccccCHHHHHHHHHHHHHH-CCceEEEE
Confidence 99754321 122333445444 66655543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=127.86 Aligned_cols=122 Identities=12% Similarity=0.101 Sum_probs=88.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcc-------cccCCCCcchhhhcccCCcEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNA-------LDEKGQPIYDAEKKTLLDRVEF 100 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~g-------l~~~~~~~~~~~~~~~~~~v~~ 100 (903)
.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|++|+...+ ++ ...+++++
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~------------~~~~~v~~ 171 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE------------EWPDNVDF 171 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSS------------CCCCCEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccccccc------------ccCCceEE
Confidence 467899999999999999999985 44899999999999999999987532 20 01257999
Q ss_pred EEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 101 HESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 101 ~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
+++|+.+.... ..++||+|++|+|... .+++++.++
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~~~~-------------------------------------------~~l~~~~~~ 208 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDMLNPH-------------------------------------------VTLPVFYPH 208 (336)
T ss_dssp EESCTTCCC-------EEEEEECSSSTT-------------------------------------------TTHHHHGGG
T ss_pred EECChHHcccccCCCCeeEEEECCCCHH-------------------------------------------HHHHHHHHh
Confidence 99999886321 2237999998754210 247889999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHH
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFER 205 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~ 205 (903)
|+|||.+++..+.......+.+.+++
T Consensus 209 LkpgG~lv~~~~~~~~~~~~~~~l~~ 234 (336)
T 2b25_A 209 LKHGGVCAVYVVNITQVIELLDGIRT 234 (336)
T ss_dssp EEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999887754333333344444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=126.65 Aligned_cols=140 Identities=15% Similarity=0.105 Sum_probs=97.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|..+..+++..+..+|+++|+|+.+++.|++++...+. .-..++++++.+|+.+..
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------------~~~~~~v~~~~~D~~~~l 145 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISC------------GYEDKRVNVFIEDASKFL 145 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSG------------GGGSTTEEEEESCHHHHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcc------------ccCCCcEEEEECChHHHH
Confidence 56899999999999999999876678999999999999999998754321 000258999999998865
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+++++....+. . .. . -..+++.+.++|+|||++++.
T Consensus 146 ~~~~~~fD~Ii~d~~~~~~~~----~-~l------------------~-----------~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 146 ENVTNTYDVIIVDSSDPIGPA----E-TL------------------F-----------NQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp HHCCSCEEEEEEECCCTTTGG----G-GG------------------S-----------SHHHHHHHHHHEEEEEEEEEE
T ss_pred HhCCCCceEEEEcCCCCCCcc----h-hh------------------h-----------HHHHHHHHHHhcCCCcEEEEE
Confidence 332348999998765332110 0 00 0 027899999999999999998
Q ss_pred eCCC-CcHHHH---HHHHHHCCCeEEEEEeh
Q 043334 190 MGGR-PGQGVC---KRLFERRGFRVDKLWQT 216 (903)
Q Consensus 190 ~~~~-~~~~~l---~~ll~~~gf~~~~~~~~ 216 (903)
.+.. ...... .+.+++. |..+..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~ 221 (283)
T 2i7c_A 192 CESLWIHVGTIKNMIGYAKKL-FKKVEYANI 221 (283)
T ss_dssp CCCTTTCHHHHHHHHHHHHTT-CSEEEEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHH-CCceEEEEE
Confidence 7643 222222 2334333 776665443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-10 Score=114.96 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=93.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++.+ ++.+++|+|+++ +++. .++++.++|+.+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------------------~~~~~~~~d~~~ 73 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------------------VGVDFLQGDFRD 73 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------------------------TTEEEEESCTTS
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------------------------CcEEEEEccccc
Confidence 367899999999999999999986 458999999999 6532 268999999987
Q ss_pred cc--------cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 108 YC--------RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 108 ~~--------~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
.. ... ++||+|++|+|+........ ... ........+++++.++
T Consensus 74 ~~~~~~~~~~~~~-~~~D~i~~~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~l~~~~~~ 125 (180)
T 1ej0_A 74 ELVMKALLERVGD-SKVQVVMSDMAPNMSGTPAV-DIP--------------------------RAMYLVELALEMCRDV 125 (180)
T ss_dssp HHHHHHHHHHHTT-CCEEEEEECCCCCCCSCHHH-HHH--------------------------HHHHHHHHHHHHHHHH
T ss_pred chhhhhhhccCCC-CceeEEEECCCccccCCCcc-chH--------------------------HHHHHHHHHHHHHHHH
Confidence 64 222 38999999998764432110 000 0011234889999999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
|+|||.+++..........+.+.+++. |..+...
T Consensus 126 L~~gG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 126 LAPGGSFVVKVFQGEGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp EEEEEEEEEEEESSTTHHHHHHHHHHH-EEEEEEE
T ss_pred cCCCcEEEEEEecCCcHHHHHHHHHHh-hhhEEee
Confidence 999999999766655555555666664 7766654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-11 Score=124.48 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=84.1
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++.. ..+++++++|+.+
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~~-------------------~~~~~~~~~d~~~ 112 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKENT-------------------AANISYRLLDGLV 112 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHSC-------------------CTTEEEEECCTTC
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhCc-------------------ccCceEEECcccc
Confidence 3467899999999999999999985 399999999999999998761 1379999999988
Q ss_pred cccCC----CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 108 YCRDH----DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 108 ~~~~~----~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
+.... ...||+|+++......+. +....+++++.++||||
T Consensus 113 ~~~~~~~~~~~~~d~v~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~Lkpg 156 (245)
T 3ggd_A 113 PEQAAQIHSEIGDANIYMRTGFHHIPV------------------------------------EKRELLGQSLRILLGKQ 156 (245)
T ss_dssp HHHHHHHHHHHCSCEEEEESSSTTSCG------------------------------------GGHHHHHHHHHHHHTTT
T ss_pred cccccccccccCccEEEEcchhhcCCH------------------------------------HHHHHHHHHHHHHcCCC
Confidence 64321 114899997644432211 01237899999999999
Q ss_pred cEEEEEeCCCCcHHH
Q 043334 184 GIMIFNMGGRPGQGV 198 (903)
Q Consensus 184 G~ll~~~~~~~~~~~ 198 (903)
|.+++..........
T Consensus 157 G~l~i~~~~~~~~~~ 171 (245)
T 3ggd_A 157 GAMYLIELGTGCIDF 171 (245)
T ss_dssp CEEEEEEECTTHHHH
T ss_pred CEEEEEeCCccccHH
Confidence 997775544433333
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-10 Score=119.55 Aligned_cols=122 Identities=19% Similarity=0.193 Sum_probs=91.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++.++|+.+..
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~-----------------------~~~~~~d~~~~~ 86 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKL-----------------------DHVVLGDIETMD 86 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTS-----------------------SEEEESCTTTCC
T ss_pred CCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhC-----------------------CcEEEcchhhcC
Confidence 6789999999999999999987 489999999999999998653 367889987632
Q ss_pred c-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 R-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. ...++||+|+++-.....++ ...+++++.++|+|||.+++
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~~gG~l~~ 128 (230)
T 3cc8_A 87 MPYEEEQFDCVIFGDVLEHLFD--------------------------------------PWAVIEKVKPYIKQNGVILA 128 (230)
T ss_dssp CCSCTTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHTGGGEEEEEEEEE
T ss_pred CCCCCCccCEEEECChhhhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEE
Confidence 1 12348999997522221110 12789999999999999999
Q ss_pred EeCCC-----------------------------CcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGGR-----------------------------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~~-----------------------------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
..+.. .....+.+++++.||+++...
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 183 (230)
T 3cc8_A 129 SIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVD 183 (230)
T ss_dssp EEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEE
Confidence 64321 245667788888898887764
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-10 Score=125.78 Aligned_cols=128 Identities=16% Similarity=0.098 Sum_probs=99.8
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||+|||+|..+..+++.+|+.+++++|+ +.+++.|++++...++ .++++++.+|+.+.. +
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~-~ 231 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLA---------------GERVSLVGGDMLQEV-P 231 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHH---------------TTSEEEEESCTTTCC-C
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCC---------------CCcEEEecCCCCCCC-C
Confidence 8999999999999999999998899999999 9999999999876665 358999999998842 2
Q ss_pred CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeC
Q 043334 112 HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMG 191 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~ 191 (903)
++||+|+++-..+. + ..+....+++++.+.|+|||++++...
T Consensus 232 --~~~D~v~~~~vl~~-------------~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 --SNGDIYLLSRIIGD-------------L-----------------------DEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp --SSCSEEEEESCGGG-------------C-----------------------CHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred --CCCCEEEEchhccC-------------C-----------------------CHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 37999986422211 0 111123789999999999999998532
Q ss_pred ------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 192 ------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 192 ------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.......+++++++.||+.++.+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 320 (334)
T 2ip2_A 274 TISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIV 320 (334)
T ss_dssp CBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred ccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEE
Confidence 11245566788999999988774
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=9.5e-11 Score=131.95 Aligned_cols=103 Identities=17% Similarity=0.067 Sum_probs=86.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc---------------ccccCCCCcchhhhccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN---------------ALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~---------------gl~~~~~~~~~~~~~~~ 94 (903)
++.+|||+|||+|.+++.+++..++.+|+++|+|+++++.+++|++.| ++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl--------------- 111 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE--------------- 111 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS---------------
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC---------------
Confidence 468999999999999999999877789999999999999999999998 54
Q ss_pred CCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHH
Q 043334 95 LDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 174 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~ 174 (903)
.+++++++|+.+.......+||+|+.|||+.. ..+++
T Consensus 112 -~~i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~------------------------------------------~~~l~ 148 (378)
T 2dul_A 112 -KTIVINHDDANRLMAERHRYFHFIDLDPFGSP------------------------------------------MEFLD 148 (378)
T ss_dssp -SEEEEEESCHHHHHHHSTTCEEEEEECCSSCC------------------------------------------HHHHH
T ss_pred -CceEEEcCcHHHHHHhccCCCCEEEeCCCCCH------------------------------------------HHHHH
Confidence 34999999998875432337999998876531 05688
Q ss_pred HHhhcccCCcEEEEEe
Q 043334 175 EGIGVIKPSGIMIFNM 190 (903)
Q Consensus 175 ~~~~~LkpgG~ll~~~ 190 (903)
.+.+.||+||.+++..
T Consensus 149 ~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 149 TALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhcCCCCEEEEEe
Confidence 8889999999888865
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.1e-10 Score=125.08 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=97.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
...+|+|+|||+|.+++.+++++|+.+++..|+ |.+++.|++++...+ .+|++++.+|+++.+
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~----------------~~rv~~~~gD~~~~~ 241 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE----------------EEQIDFQEGDFFKDP 241 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC------------------CCSEEEEESCTTTSC
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc----------------cCceeeecCccccCC
Confidence 457999999999999999999999999999998 889999998874333 369999999998764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+ .+|+++.. ...+.+. .+...++++++++.|+|||++++.
T Consensus 242 ~~---~~D~~~~~-------------~vlh~~~-----------------------d~~~~~iL~~~~~al~pgg~lli~ 282 (353)
T 4a6d_A 242 LP---EADLYILA-------------RVLHDWA-----------------------DGKCSHLLERIYHTCKPGGGILVI 282 (353)
T ss_dssp CC---CCSEEEEE-------------SSGGGSC-----------------------HHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CC---CceEEEee-------------eecccCC-----------------------HHHHHHHHHHHHhhCCCCCEEEEE
Confidence 33 57998731 1122221 222347899999999999999883
Q ss_pred eC-------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MG-------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~-------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. .......++++++++||+.++++
T Consensus 283 e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~ 332 (353)
T 4a6d_A 283 ESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFK 332 (353)
T ss_dssp ECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred EeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEE
Confidence 21 11234566889999999998884
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=122.62 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=84.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..+++.++ +.+|+++|+++.+++.|++++..++++ ++++++++|+.+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~---------------~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLE---------------NKIFLKLGSALET 124 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCG---------------GGEEEEESCHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CCEEEEECCHHHH
Confidence 467999999999999999999876 679999999999999999999887762 4699999998764
Q ss_pred ccCC---------------C-CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 109 CRDH---------------D-IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 109 ~~~~---------------~-~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
.... . ++||+|+++.. . . .+..+
T Consensus 125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~------~--------~---------------------------~~~~~ 163 (239)
T 2hnk_A 125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD------K--------E---------------------------NYPNY 163 (239)
T ss_dssp HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC------G--------G---------------------------GHHHH
T ss_pred HHHHHhhcccccccccccCCCCCcCEEEEeCC------H--------H---------------------------HHHHH
Confidence 3210 1 38999996521 0 0 02267
Q ss_pred HHHHhhcccCCcEEEEEe
Q 043334 173 VEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~ 190 (903)
++++.+.|+|||++++..
T Consensus 164 l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 164 YPLILKLLKPGGLLIADN 181 (239)
T ss_dssp HHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHcCCCeEEEEEc
Confidence 899999999999999965
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=121.15 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=84.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++++|||+|||+|..++.+++..+ +.+|+++|+|+++++.|++++..++++ ++++++++|+.+.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~---------------~~i~~~~~d~~~~ 136 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVA---------------EKISLRLGPALAT 136 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCG---------------GGEEEEESCHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC---------------CcEEEEEcCHHHH
Confidence 457999999999999999999876 679999999999999999999887762 5799999998664
Q ss_pred ccC---CC--CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRD---HD--IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~---~~--~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
... .+ ++||+|+++.+. . .+..+++++.++|+||
T Consensus 137 l~~l~~~~~~~~fD~V~~d~~~------~-----------------------------------~~~~~l~~~~~~Lkpg 175 (232)
T 3cbg_A 137 LEQLTQGKPLPEFDLIFIDADK------R-----------------------------------NYPRYYEIGLNLLRRG 175 (232)
T ss_dssp HHHHHTSSSCCCEEEEEECSCG------G-----------------------------------GHHHHHHHHHHTEEEE
T ss_pred HHHHHhcCCCCCcCEEEECCCH------H-----------------------------------HHHHHHHHHHHHcCCC
Confidence 221 11 489999965320 0 0236799999999999
Q ss_pred cEEEEEe
Q 043334 184 GIMIFNM 190 (903)
Q Consensus 184 G~ll~~~ 190 (903)
|.+++..
T Consensus 176 G~lv~~~ 182 (232)
T 3cbg_A 176 GLMVIDN 182 (232)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9999954
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-11 Score=126.27 Aligned_cols=128 Identities=19% Similarity=0.219 Sum_probs=83.2
Q ss_pred CCCeEEEeCCccCH----HHHHHHHHhC----CCEEEEEeCCHHHHHHHHHHHHhcc-cccCCCCc---c----hh--h-
Q 043334 30 KDKTVAELGCGNGW----ITIAIAEKWL----PSKVYGLDINPRAIRISWINLYLNA-LDEKGQPI---Y----DA--E- 90 (903)
Q Consensus 30 ~~~~VLDlGCGtG~----lsi~la~~~~----~~~V~giDis~~al~~A~~n~~~~g-l~~~~~~~---~----~~--~- 90 (903)
++.+|+|+|||||. +++.+++..+ +.+|+|+|+|++|++.|++++.... +...+..+ + .. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 6777777755 4699999999999999998753110 00000000 0 00 0
Q ss_pred ----hcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccH
Q 043334 91 ----KKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGL 166 (903)
Q Consensus 91 ----~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~ 166 (903)
...+..++.|.++|+.+.+.+..++||+|+|.- ...++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn------vliyf~~------------------------------ 228 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN------VMIYFDK------------------------------ 228 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS------SGGGSCH------------------------------
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC------chHhCCH------------------------------
Confidence 001124799999999885322124899999731 1112211
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCC
Q 043334 167 GLIARAVEEGIGVIKPSGIMIFNMGGR 193 (903)
Q Consensus 167 ~~~~~~l~~~~~~LkpgG~ll~~~~~~ 193 (903)
+...++++++++.|+|||.+++.++..
T Consensus 229 ~~~~~vl~~~~~~L~pgG~L~lg~sE~ 255 (274)
T 1af7_A 229 TTQEDILRRFVPLLKPDGLLFAGHSEN 255 (274)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEeccc
Confidence 223488999999999999999866544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=129.24 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHH-------HHHHHhcccccCCCCcchhhhcccCCcEEEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRIS-------WINLYLNALDEKGQPIYDAEKKTLLDRVEFH 101 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A-------~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~ 101 (903)
.++.+|||+|||+|.+++.+|+..+..+|+|+|+++.+++.| ++|+...|++ ..+++++
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~--------------~~nV~~i 306 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR--------------LNNVEFS 306 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC--------------CCCEEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC--------------CCceEEE
Confidence 367899999999999999999988777999999999999999 8888777731 1489999
Q ss_pred Ecccccc--cc-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhh
Q 043334 102 ESDLLAY--CR-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIG 178 (903)
Q Consensus 102 ~gDl~~~--~~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~ 178 (903)
++|.... .. ...++||+|++|.... . . .....++++.+
T Consensus 307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l~-~-------~-------------------------------d~~~~L~el~r 347 (433)
T 1u2z_A 307 LKKSFVDNNRVAELIPQCDVILVNNFLF-D-------E-------------------------------DLNKKVEKILQ 347 (433)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECCTTC-C-------H-------------------------------HHHHHHHHHHT
T ss_pred EcCccccccccccccCCCCEEEEeCccc-c-------c-------------------------------cHHHHHHHHHH
Confidence 9864421 10 0113899999763221 0 0 02256889999
Q ss_pred cccCCcEEEEE
Q 043334 179 VIKPSGIMIFN 189 (903)
Q Consensus 179 ~LkpgG~ll~~ 189 (903)
.|||||.+++.
T Consensus 348 ~LKpGG~lVi~ 358 (433)
T 1u2z_A 348 TAKVGCKIISL 358 (433)
T ss_dssp TCCTTCEEEES
T ss_pred hCCCCeEEEEe
Confidence 99999999985
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9e-10 Score=125.64 Aligned_cols=125 Identities=16% Similarity=0.240 Sum_probs=88.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEE-EEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVE-FHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~-~~~gDl~~ 107 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++ +++ .... +...+...
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----~~~---------------~~~~~~~~~~~~~ 164 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----GIR---------------VRTDFFEKATADD 164 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----TCC---------------EECSCCSHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----CCC---------------cceeeechhhHhh
Confidence 35789999999999999999986 67999999999999999865 221 0111 22333333
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+... +++||+|+++-.....+ ....+++++.++|||||+++
T Consensus 165 l~~~-~~~fD~I~~~~vl~h~~--------------------------------------d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 165 VRRT-EGPANVIYAANTLCHIP--------------------------------------YVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp HHHH-HCCEEEEEEESCGGGCT--------------------------------------THHHHHHHHHHHEEEEEEEE
T ss_pred cccC-CCCEEEEEECChHHhcC--------------------------------------CHHHHHHHHHHHcCCCeEEE
Confidence 3322 23899999752222111 13378999999999999999
Q ss_pred EEeCC-------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGG-------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~-------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+..+. ......+++++++.||+++..
T Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 206 FEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp EEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred EEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 96532 124456788899999988776
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.3e-10 Score=119.26 Aligned_cols=100 Identities=24% Similarity=0.264 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++...++ +++++++|+.+.
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~------------------~v~~~~~d~~~~ 128 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYYN------------------NIKLILGDGTLG 128 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTCS------------------SEEEEESCGGGC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH--cCEEEEEeCCHHHHHHHHHHHhhcC------------------CeEEEECCcccc
Confidence 35789999999999999999987 3799999999999999999884332 699999999874
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... .++||+|+++.+... +.+++.++|||||++++
T Consensus 129 ~~~-~~~fD~v~~~~~~~~--------------------------------------------~~~~~~~~L~pgG~l~~ 163 (231)
T 1vbf_A 129 YEE-EKPYDRVVVWATAPT--------------------------------------------LLCKPYEQLKEGGIMIL 163 (231)
T ss_dssp CGG-GCCEEEEEESSBBSS--------------------------------------------CCHHHHHTEEEEEEEEE
T ss_pred ccc-CCCccEEEECCcHHH--------------------------------------------HHHHHHHHcCCCcEEEE
Confidence 332 238999997644321 12357789999999999
Q ss_pred EeCCC
Q 043334 189 NMGGR 193 (903)
Q Consensus 189 ~~~~~ 193 (903)
..+..
T Consensus 164 ~~~~~ 168 (231)
T 1vbf_A 164 PIGVG 168 (231)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 87654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=125.47 Aligned_cols=117 Identities=10% Similarity=-0.073 Sum_probs=77.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc----
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL---- 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl---- 105 (903)
++.+|||+|||+|..+..++.. ++.+|+|+|+|+.||+.|+++....+... ..-..++++.++|+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~----------~~~~~~~~f~~~d~~~d~ 116 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGI----------KTKYYKFDYIQETIRSDT 116 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC--------------CCCEEEEEECCTTSSS
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccc----------cccccccchhhhhcccch
Confidence 5789999999999866665554 35799999999999999999876543200 00001367888887
Q ss_pred --ccccc-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 106 --LAYCR-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 106 --~~~~~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
.++.. ...++||+|+|.--.+ ++.. . . ....+++++.++|||
T Consensus 117 ~~~~l~~~~~~~~FD~V~~~~~lh------y~~~-------------------------~-~---~~~~~l~~~~r~Lkp 161 (302)
T 2vdw_A 117 FVSSVREVFYFGKFNIIDWQFAIH------YSFH-------------------------P-R---HYATVMNNLSELTAS 161 (302)
T ss_dssp HHHHHHTTCCSSCEEEEEEESCGG------GTCS-------------------------T-T---THHHHHHHHHHHEEE
T ss_pred hhhhhhccccCCCeeEEEECchHH------HhCC-------------------------H-H---HHHHHHHHHHHHcCC
Confidence 32211 1234899998642111 1000 0 0 023789999999999
Q ss_pred CcEEEEEeCC
Q 043334 183 SGIMIFNMGG 192 (903)
Q Consensus 183 gG~ll~~~~~ 192 (903)
||.+++.+..
T Consensus 162 GG~~i~~~~~ 171 (302)
T 2vdw_A 162 GGKVLITTMD 171 (302)
T ss_dssp EEEEEEEEEC
T ss_pred CCEEEEEeCC
Confidence 9999987654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=120.03 Aligned_cols=108 Identities=12% Similarity=0.034 Sum_probs=75.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++|+..+.. +..+...+....
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v-----------------~~~~~~~~~~~~ 104 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCV-----------------TIDLLDITAEIP 104 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCC-----------------EEEECCTTSCCC
T ss_pred CCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccc-----------------eeeeeecccccc
Confidence 35789999999999999999987 68999999999999999998743311 233332222000
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
....++||+|++|....... .+....+++++.++| |||++++
T Consensus 105 -~~~~~~fD~Vv~~~~l~~~~------------------------------------~~~~~~~l~~l~~lL-PGG~l~l 146 (261)
T 3iv6_A 105 -KELAGHFDFVLNDRLINRFT------------------------------------TEEARRACLGMLSLV-GSGTVRA 146 (261)
T ss_dssp -GGGTTCCSEEEEESCGGGSC------------------------------------HHHHHHHHHHHHHHH-TTSEEEE
T ss_pred -cccCCCccEEEEhhhhHhCC------------------------------------HHHHHHHHHHHHHhC-cCcEEEE
Confidence 11123899999864433110 011336789999999 9999999
Q ss_pred EeCCC
Q 043334 189 NMGGR 193 (903)
Q Consensus 189 ~~~~~ 193 (903)
.+...
T Consensus 147 S~~~g 151 (261)
T 3iv6_A 147 SVKLG 151 (261)
T ss_dssp EEEBS
T ss_pred EeccC
Confidence 76543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.7e-10 Score=116.96 Aligned_cols=100 Identities=12% Similarity=0.181 Sum_probs=78.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~-~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|.++..+ +. +|+|+|+|+.|++.|+++. .+++++++|+.+.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~ 89 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA---------------------PEATWVRAWGEAL 89 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC---------------------TTSEEECCCTTSC
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC---------------------CCcEEEEcccccC
Confidence 6789999999999998876 45 9999999999999999875 2688999999886
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+... ++||+|+++-.....++ ...+++++.++|||||.+++
T Consensus 90 ~~~~-~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i 130 (211)
T 2gs9_A 90 PFPG-ESFDVVLLFTTLEFVED--------------------------------------VERVLLEARRVLRPGGALVV 130 (211)
T ss_dssp CSCS-SCEEEEEEESCTTTCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred CCCC-CcEEEEEEcChhhhcCC--------------------------------------HHHHHHHHHHHcCCCCEEEE
Confidence 5433 48999997633322111 22789999999999999999
Q ss_pred EeCCCC
Q 043334 189 NMGGRP 194 (903)
Q Consensus 189 ~~~~~~ 194 (903)
......
T Consensus 131 ~~~~~~ 136 (211)
T 2gs9_A 131 GVLEAL 136 (211)
T ss_dssp EEECTT
T ss_pred EecCCc
Confidence 766544
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.9e-11 Score=123.43 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=86.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHH----hCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEK----WLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~----~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++.+|||+|||+|..+..+++. .++.+|+|+|+|+.|++.|+ ++ .++++++++|+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~---------------~~~v~~~~gD~ 139 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD---------------MENITLHQGDC 139 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG---------------CTTEEEEECCS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc---------------CCceEEEECcc
Confidence 3579999999999999999987 56789999999999998886 11 14799999999
Q ss_pred ccc---ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhh-ccc
Q 043334 106 LAY---CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIG-VIK 181 (903)
Q Consensus 106 ~~~---~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~-~Lk 181 (903)
.+. ......+||+|+++... . .+..+++++.+ +||
T Consensus 140 ~~~~~l~~~~~~~fD~I~~d~~~--------------~---------------------------~~~~~l~~~~r~~Lk 178 (236)
T 2bm8_A 140 SDLTTFEHLREMAHPLIFIDNAH--------------A---------------------------NTFNIMKWAVDHLLE 178 (236)
T ss_dssp SCSGGGGGGSSSCSSEEEEESSC--------------S---------------------------SHHHHHHHHHHHTCC
T ss_pred hhHHHHHhhccCCCCEEEECCch--------------H---------------------------hHHHHHHHHHHhhCC
Confidence 874 22222369999854220 0 02267889997 999
Q ss_pred CCcEEEEEeC----CCCcHHHHHHHHHHC--CCeEE
Q 043334 182 PSGIMIFNMG----GRPGQGVCKRLFERR--GFRVD 211 (903)
Q Consensus 182 pgG~ll~~~~----~~~~~~~l~~ll~~~--gf~~~ 211 (903)
|||++++... .......+.+++++. +|...
T Consensus 179 pGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 179 EGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp TTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred CCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 9999999532 112233556777776 46653
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-09 Score=118.18 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=101.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..++.+++..+ ..+|+|+|+++.+++.+++|++.+|+ .+++++++|+.+.
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~----------------~~v~~~~~D~~~~ 165 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV----------------SCCELAEEDFLAV 165 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEECCGGGS
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC----------------CeEEEEeCChHhc
Confidence 578999999999999999999764 47999999999999999999998887 4799999999886
Q ss_pred ccCC--CCceeEEEECCCCCCCCCccchhhHHh---hhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CRDH--DIQLERIVGCIPQILNPNPDAMSKIIT---ENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~---~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
.... ..+||.|+.|||+........-+ +.. .+.++. -..-..+...+++.+.++|+ |
T Consensus 166 ~~~~~~~~~fD~Vl~D~PcSg~G~~~r~p-d~~~~~~~~~~~----------------~~~l~~~Q~~iL~~a~~~l~-g 227 (309)
T 2b9e_A 166 SPSDPRYHEVHYILLDPSCSGSGMPSRQL-EEPGAGTPSPVR----------------LHALAGFQQRALCHALTFPS-L 227 (309)
T ss_dssp CTTCGGGTTEEEEEECCCCCC-------------------CC----------------HHHHHHHHHHHHHHHTTCTT-C
T ss_pred CccccccCCCCEEEEcCCcCCCCCCccCC-ChhhhccCCHHH----------------HHHHHHHHHHHHHHHHhccC-C
Confidence 5322 13799999999997543221100 000 000000 00012334578999999887 9
Q ss_pred cEEEEEeCC---CCcHHHHHHHHHHC-C-CeEE
Q 043334 184 GIMIFNMGG---RPGQGVCKRLFERR-G-FRVD 211 (903)
Q Consensus 184 G~ll~~~~~---~~~~~~l~~ll~~~-g-f~~~ 211 (903)
|++++.+.+ ......+...++++ + |+.+
T Consensus 228 G~lvYsTCs~~~~Ene~~v~~~l~~~~~~~~~~ 260 (309)
T 2b9e_A 228 QRLVYSTCSLCQEENEDVVRDALQQNPGAFRLA 260 (309)
T ss_dssp CEEEEEESCCCGGGTHHHHHHHHTTSTTTEEEC
T ss_pred CEEEEECCCCChHHhHHHHHHHHHhCCCcEEEe
Confidence 998886544 34555667777765 3 6554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.1e-10 Score=115.94 Aligned_cols=119 Identities=19% Similarity=0.228 Sum_probs=90.4
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ +++++++|+.+...
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------------------~~~~~~~d~~~~~~ 98 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------------------GVFVLKGTAENLPL 98 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------------------TCEEEECBTTBCCS
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------------------CCEEEEcccccCCC
Confidence 689999999999999887643 9999999999999865 36788999887653
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
. .++||+|+++-.....++ ...+++++.++|+|||.+++..
T Consensus 99 ~-~~~fD~v~~~~~l~~~~~--------------------------------------~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 99 K-DESFDFALMVTTICFVDD--------------------------------------PERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp C-TTCEEEEEEESCGGGSSC--------------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCeeEEEEcchHhhccC--------------------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 3 348999997532221110 1268999999999999999953
Q ss_pred CCC-----------------------CcHHHHHHHHHHCCCeEEEEEehh
Q 043334 191 GGR-----------------------PGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 191 ~~~-----------------------~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
... .....+.+++++.||+++......
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~ 189 (219)
T 1vlm_A 140 VDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTL 189 (219)
T ss_dssp ECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred eCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence 221 255677889999999998876543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.9e-10 Score=122.79 Aligned_cols=120 Identities=14% Similarity=0.062 Sum_probs=85.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++....+... ......+++++++|+.+..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~---------~~~~~~~~~~~~~D~~~~~ 103 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRR---------DSEYIFSAEFITADSSKEL 103 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSS---------CC-CCCEEEEEECCTTTSC
T ss_pred CCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcc---------cccccceEEEEEecccccc
Confidence 5679999999999999998874 57799999999999999999886542100 0001247999999998864
Q ss_pred ----cC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 110 ----RD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 110 ----~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.. ..++||+|+++-... ++. ........+++++.++|||||
T Consensus 104 ~~~~~~~~~~~fD~V~~~~~l~------~~~----------------------------~~~~~~~~~l~~~~~~LkpgG 149 (313)
T 3bgv_A 104 LIDKFRDPQMCFDICSCQFVCH------YSF----------------------------ESYEQADMMLRNACERLSPGG 149 (313)
T ss_dssp STTTCSSTTCCEEEEEEETCGG------GGG----------------------------GSHHHHHHHHHHHHTTEEEEE
T ss_pred hhhhcccCCCCEEEEEEecchh------hcc----------------------------CCHHHHHHHHHHHHHHhCCCc
Confidence 21 224899999753221 110 011223478999999999999
Q ss_pred EEEEEeCCC
Q 043334 185 IMIFNMGGR 193 (903)
Q Consensus 185 ~ll~~~~~~ 193 (903)
.+++.+...
T Consensus 150 ~li~~~~~~ 158 (313)
T 3bgv_A 150 YFIGTTPNS 158 (313)
T ss_dssp EEEEEEECH
T ss_pred EEEEecCCh
Confidence 999977653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=132.10 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh------------------------------------------CCCEEEEEeCCHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW------------------------------------------LPSKVYGLDINPRA 66 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~------------------------------------------~~~~V~giDis~~a 66 (903)
.++..|||++||||.+++.+|... +..+|+|+|+|+.|
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 357899999999999999988753 22589999999999
Q ss_pred HHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCC-CceeEEEECCCCCCCCCccchhhHHhhhhhhh
Q 043334 67 IRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHD-IQLERIVGCIPQILNPNPDAMSKIITENASEE 145 (903)
Q Consensus 67 l~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~-~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~ 145 (903)
++.|++|+..+|++ +.+++.++|+.+...+.. ++||+||+||||-..-..
T Consensus 269 v~~A~~N~~~agv~---------------~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~-------------- 319 (703)
T 3v97_A 269 IQRARTNARLAGIG---------------ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDS-------------- 319 (703)
T ss_dssp HHHHHHHHHHTTCG---------------GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---C--------------
T ss_pred HHHHHHHHHHcCCC---------------CceEEEECChhhCccccccCCCCEEEeCCCccccccc--------------
Confidence 99999999999983 469999999998754332 279999999999632110
Q ss_pred hhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 146 FLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 146 ~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
...+..+++.+.+..+.+.|||.+++.++.. .+.+..|.+..+.
T Consensus 320 -----------------~~~l~~ly~~l~~~lk~~~~g~~~~ilt~~~-------~l~~~~glk~~k~ 363 (703)
T 3v97_A 320 -----------------EPALIALHSLLGRIMKNQFGGWNLSLFSASP-------DLLSCLQLRADKQ 363 (703)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHCTTCEEEEEESCH-------HHHHTTCCCEEEE
T ss_pred -----------------hhHHHHHHHHHHHHHHhhCCCCeEEEEeCCH-------HHHHHhCCCcccc
Confidence 0011112345666677777999999987752 3455667766544
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=9.3e-10 Score=111.43 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=87.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCC---------CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEE
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLP---------SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVE 99 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~---------~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~ 99 (903)
.++.+|||+|||+|.++..+++..+. .+|+|+|+|+.+ .+ .+++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~----------------~~~~ 73 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL----------------EGAT 73 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC----------------TTCE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC----------------CCCe
Confidence 46789999999999999999998765 799999999831 11 3688
Q ss_pred EE-Ecccccccc-------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHH
Q 043334 100 FH-ESDLLAYCR-------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIAR 171 (903)
Q Consensus 100 ~~-~gDl~~~~~-------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~ 171 (903)
++ ++|+.+... ..+.+||+|++|++...... ..... .....+...
T Consensus 74 ~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~--~~~~~-------------------------~~~~~~~~~ 126 (196)
T 2nyu_A 74 FLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGF--RDLDH-------------------------DRLISLCLT 126 (196)
T ss_dssp EECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSC--HHHHH-------------------------HHHHHHHHH
T ss_pred EEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCC--cccCH-------------------------HHHHHHHHH
Confidence 88 899866421 11237999999864332111 00000 001123357
Q ss_pred HHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 172 AVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 172 ~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+++++.++|||||.+++..........+.+.+... |..+..+
T Consensus 127 ~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~-f~~v~~~ 168 (196)
T 2nyu_A 127 LLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEE-FQNVRII 168 (196)
T ss_dssp HHHHHHHHEEEEEEEEEEECCSGGGHHHHHHHHHH-EEEEEEE
T ss_pred HHHHHHHHhcCCCEEEEEecCCccHHHHHHHHHHH-hcceEEE
Confidence 89999999999999999876555444444555553 6655553
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.3e-10 Score=124.04 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=67.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++++..++. .++++++++|+.+..
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---------------~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPV---------------ASKLQVLVGDVLKTD 90 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTT---------------GGGEEEEESCTTTSC
T ss_pred CCCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHhcCC---------------CCceEEEEcceeccc
Confidence 5689999999999999999998 57999999999999999999865543 247999999998864
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
.+ .||+|++|+||..
T Consensus 91 ~~---~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 91 LP---FFDTCVANLPYQI 105 (285)
T ss_dssp CC---CCSEEEEECCGGG
T ss_pred ch---hhcEEEEecCccc
Confidence 33 7999999999984
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=117.04 Aligned_cols=108 Identities=12% Similarity=-0.005 Sum_probs=81.3
Q ss_pred CCeEEEeCCcc---CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 31 DKTVAELGCGN---GWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 31 ~~~VLDlGCGt---G~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..+|||+|||+ |.++..+.+..|+.+|+|+|+|+.|++.|++++... ++++++++|+.+
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~------------------~~v~~~~~D~~~ 139 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD------------------PNTAVFTADVRD 139 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC------------------TTEEEEECCTTC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC------------------CCeEEEEeeCCC
Confidence 47999999999 998887777778899999999999999999987321 479999999976
Q ss_pred ccc----------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 108 YCR----------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 108 ~~~----------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
... ....+||+|+++--.+..++. ....+++++.
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~------------------------------------~~~~~l~~~~ 183 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD------------------------------------VVDRVVGAYR 183 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT------------------------------------THHHHHHHHH
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcH------------------------------------HHHHHHHHHH
Confidence 420 111279999865322211110 0237899999
Q ss_pred hcccCCcEEEEEeCC
Q 043334 178 GVIKPSGIMIFNMGG 192 (903)
Q Consensus 178 ~~LkpgG~ll~~~~~ 192 (903)
++|+|||.+++....
T Consensus 184 ~~L~pGG~l~i~~~~ 198 (274)
T 2qe6_A 184 DALAPGSYLFMTSLV 198 (274)
T ss_dssp HHSCTTCEEEEEEEB
T ss_pred HhCCCCcEEEEEEec
Confidence 999999999996544
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-10 Score=131.83 Aligned_cols=134 Identities=13% Similarity=0.182 Sum_probs=91.9
Q ss_pred CCcccCc---chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccc
Q 043334 5 PSIFIPE---DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALD 80 (903)
Q Consensus 5 p~vfiP~---~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~ 80 (903)
.+.|.|. .|...+.+.+... ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.|++.|++++......
T Consensus 698 ~gtFsPPL~eqRle~LLelL~~~-----~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA 772 (950)
T 3htx_A 698 AAFFKPPLSKQRVEYALKHIRES-----SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK 772 (950)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHHS-----CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT
T ss_pred hCcCCchHHHHHHHHHHHHhccc-----CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch
Confidence 4556664 2333344444433 46899999999999999999886 3479999999999999999877543110
Q ss_pred cCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccc
Q 043334 81 EKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFV 160 (903)
Q Consensus 81 ~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v 160 (903)
......+++++++|+.++.... ++||+|+++-.... +.
T Consensus 773 ----------kr~gl~nVefiqGDa~dLp~~d-~sFDlVV~~eVLeH------L~------------------------- 810 (950)
T 3htx_A 773 ----------EACNVKSATLYDGSILEFDSRL-HDVDIGTCLEVIEH------ME------------------------- 810 (950)
T ss_dssp ----------TCSSCSEEEEEESCTTSCCTTS-CSCCEEEEESCGGG------SC-------------------------
T ss_pred ----------hhcCCCceEEEECchHhCCccc-CCeeEEEEeCchhh------CC-------------------------
Confidence 0001248999999999876543 48999996422211 11
Q ss_pred cccccHHHHHHHHHHHhhcccCCcEEEEEeC
Q 043334 161 EDQFGLGLIARAVEEGIGVIKPSGIMIFNMG 191 (903)
Q Consensus 161 ~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~ 191 (903)
......+++++.++|||| .+++...
T Consensus 811 -----dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 811 -----EDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp -----HHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred -----hHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 011236899999999999 6666554
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.2e-10 Score=125.38 Aligned_cols=129 Identities=18% Similarity=0.108 Sum_probs=93.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|+.+++++|+ +.++. +++....++ .++++++.+|+.+.
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~---------------~~~v~~~~~d~~~~ 244 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDV---------------AGRWKVVEGDFLRE 244 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGG---------------TTSEEEEECCTTTC
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCC---------------CCCeEEEecCCCCC
Confidence 3578999999999999999999999999999999 45554 333322222 46899999999743
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+ +||+|+++-..+. + .......++++++++|||||++++
T Consensus 245 ~p----~~D~v~~~~vlh~-------------~-----------------------~d~~~~~~L~~~~~~LkpgG~l~i 284 (348)
T 3lst_A 245 VP----HADVHVLKRILHN-------------W-----------------------GDEDSVRILTNCRRVMPAHGRVLV 284 (348)
T ss_dssp CC----CCSEEEEESCGGG-------------S-----------------------CHHHHHHHHHHHHHTCCTTCEEEE
T ss_pred CC----CCcEEEEehhccC-------------C-----------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 22 7999985422211 1 111123789999999999999988
Q ss_pred EeCC------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ......+++++++.||+.++++.
T Consensus 285 ~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 285 IDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp EECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 4321 12456678899999999988854
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=119.02 Aligned_cols=98 Identities=27% Similarity=0.405 Sum_probs=80.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++..++.+|+|+|+|+.+++.|+++. .++.+..+|+.+..
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~~~ 143 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------------------PQVTFCVASSHRLP 143 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCTTSCS
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---------------------CCcEEEEcchhhCC
Confidence 578999999999999999999877789999999999999998764 36889999998765
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++.. . .+++++.++|||||.+++.
T Consensus 144 ~~~-~~fD~v~~~~~----~-----------------------------------------~~l~~~~~~L~pgG~l~~~ 177 (269)
T 1p91_A 144 FSD-TSMDAIIRIYA----P-----------------------------------------CKAEELARVVKPGGWVITA 177 (269)
T ss_dssp BCT-TCEEEEEEESC----C-----------------------------------------CCHHHHHHHEEEEEEEEEE
T ss_pred CCC-CceeEEEEeCC----h-----------------------------------------hhHHHHHHhcCCCcEEEEE
Confidence 433 38999996421 0 2378889999999999997
Q ss_pred eCCCC
Q 043334 190 MGGRP 194 (903)
Q Consensus 190 ~~~~~ 194 (903)
.+...
T Consensus 178 ~~~~~ 182 (269)
T 1p91_A 178 TPGPR 182 (269)
T ss_dssp EECTT
T ss_pred EcCHH
Confidence 76543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=121.67 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=69.6
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.+...+.+.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++|+..+++
T Consensus 29 ~i~~~i~~~~~~-----~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~------------ 89 (299)
T 2h1r_A 29 GILDKIIYAAKI-----KSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGY------------ 89 (299)
T ss_dssp HHHHHHHHHHCC-----CTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHhcCC-----CCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCC------------
Confidence 444444444432 35689999999999999999986 67999999999999999999876665
Q ss_pred cccCCcEEEEEccccccccCCCCceeEEEECCCCCC
Q 043334 92 KTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~ 127 (903)
++++++++|+.+.... +||+|++||||..
T Consensus 90 ----~~v~~~~~D~~~~~~~---~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 90 ----NNLEVYEGDAIKTVFP---KFDVCTANIPYKI 118 (299)
T ss_dssp ----CCEEC----CCSSCCC---CCSEEEEECCGGG
T ss_pred ----CceEEEECchhhCCcc---cCCEEEEcCCccc
Confidence 4799999999887532 7999999999983
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.3e-10 Score=126.02 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=86.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCc-EEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDR-VEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~-v~~~~gDl~~ 107 (903)
++.+|||++||+|.+++.++...++ .+|+++|+|+.+++.+++|++.|+++ ++ ++++++|+.+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~---------------~~~v~v~~~Da~~ 116 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP---------------EDRYEIHGMEANF 116 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC---------------GGGEEEECSCHHH
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC---------------CceEEEEeCCHHH
Confidence 4689999999999999999987544 68999999999999999999999983 35 9999999988
Q ss_pred ccc-CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCR-DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~-~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
... ...++||+|+.|| |.. . ..+++.+.+.|+|||.+
T Consensus 117 ~l~~~~~~~fD~V~lDP-~g~------~-----------------------------------~~~l~~a~~~Lk~gGll 154 (392)
T 3axs_A 117 FLRKEWGFGFDYVDLDP-FGT------P-----------------------------------VPFIESVALSMKRGGIL 154 (392)
T ss_dssp HHHSCCSSCEEEEEECC-SSC------C-----------------------------------HHHHHHHHHHEEEEEEE
T ss_pred HHHHhhCCCCcEEEECC-CcC------H-----------------------------------HHHHHHHHHHhCCCCEE
Confidence 764 3334799999998 210 0 14677888899999998
Q ss_pred EEEeC
Q 043334 187 IFNMG 191 (903)
Q Consensus 187 l~~~~ 191 (903)
++.+.
T Consensus 155 ~~t~t 159 (392)
T 3axs_A 155 SLTAT 159 (392)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88774
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.5e-10 Score=119.11 Aligned_cols=127 Identities=9% Similarity=0.033 Sum_probs=87.4
Q ss_pred CCCCCeEEEeCCcc------CHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEE
Q 043334 28 ILKDKTVAELGCGN------GWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEF 100 (903)
Q Consensus 28 ~~~~~~VLDlGCGt------G~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~ 100 (903)
+.++.+|||+|||+ |. ..+++..+ +.+|+|+|+++. + +++++
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v----------------~~v~~ 109 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V----------------SDADS 109 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B----------------CSSSE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C----------------CCCEE
Confidence 45688999999955 65 44566666 579999999997 1 14678
Q ss_pred -EEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhc
Q 043334 101 -HESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGV 179 (903)
Q Consensus 101 -~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~ 179 (903)
+++|+.++... ++||+|++|++........ . +...+..++..+++++.++
T Consensus 110 ~i~gD~~~~~~~--~~fD~Vvsn~~~~~~g~~~-~--------------------------d~~~~~~l~~~~l~~a~r~ 160 (290)
T 2xyq_A 110 TLIGDCATVHTA--NKWDLIISDMYDPRTKHVT-K--------------------------ENDSKEGFFTYLCGFIKQK 160 (290)
T ss_dssp EEESCGGGCCCS--SCEEEEEECCCCCC---CC-S--------------------------CCCCCCTHHHHHHHHHHHH
T ss_pred EEECccccCCcc--CcccEEEEcCCcccccccc-c--------------------------cccchHHHHHHHHHHHHHh
Confidence 99999887543 3899999996422110000 0 0112233456889999999
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 180 IKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 180 LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
|||||.|++..........+.+++++.||..++..
T Consensus 161 LkpGG~~v~~~~~~~~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 161 LALGGSIAVKITEHSWNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp EEEEEEEEEEECSSSCCHHHHHHHTTEEEEEEEEE
T ss_pred cCCCcEEEEEEeccCCHHHHHHHHHHcCCcEEEEE
Confidence 99999999976544333455678888889876664
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=115.57 Aligned_cols=205 Identities=10% Similarity=0.048 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC----CCeEEEcCCCcHHHHHHHHHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE----GGTLCFPAGSNGNYVSAARFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p----GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~ 726 (903)
..+.+.+..++.+..|.+... ..++++|++.+...++.+.+++ |+.|+++.-++.+...++...|+.++.++..
T Consensus 97 ~~~e~~~~~~~~~~lGlp~~~--~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl~p~~v~~~ 174 (450)
T 3bc8_A 97 NKITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENV 174 (450)
T ss_dssp HHHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHhCCCCCCc--eEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCCeeEEEEee
Confidence 345678888888888987542 4677888874444444455554 8999999999999999999999999999763
Q ss_pred C-CCCcccCHHHHHHHhhcCC--CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCc
Q 043334 727 S-EVGFKMTEKTLVTILETVK--KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWD 803 (903)
Q Consensus 727 ~-~~~f~ld~~~L~~~l~~~~--~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s 803 (903)
. ++.+.+|++.+++++++.. .+.+++.+|+.+.+|.+-+ +++|.++|++||+++++|++|+... . .
T Consensus 175 ~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd---l~~Ia~ia~~~gi~l~VD~A~G~~~-~-~------ 243 (450)
T 3bc8_A 175 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR---LEELAVICANYDIPHVVNNAYGLQS-S-K------ 243 (450)
T ss_dssp EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTC-H-H------
T ss_pred ecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC---HHHHHHHHHHCCCeEEEECCCchhh-h-h------
Confidence 2 2357899999999997632 3467777777455667755 9999999999999999999996311 0 0
Q ss_pred hhhhh-hhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 043334 804 LEGCL-SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLL 873 (903)
Q Consensus 804 ~~~~~-~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L 873 (903)
..... ..+... .-..++.|.-|.+.. -.-.|++...+.+.++++.........++++-.....++
T Consensus 244 ~~~l~~~a~~~~----~AD~~v~S~HK~l~a-~~~~~~l~~rd~~~~~~~~~~~~g~~s~SpsL~l~~~l~ 309 (450)
T 3bc8_A 244 CMHLIQQGARVG----RIDAFVQSLDKNFMV-PVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLL 309 (450)
T ss_dssp HHHHHHHHHHHS----CCCEEEEEHHHHHSC-CSSCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHH
T ss_pred hHhHHHHHhccc----CCCEEEECCccCCCc-hhccEEEEecCHHHHHHHHHHhhcCCcccHHHHHHHHHH
Confidence 00111 111110 135678999998853 333566666666577766543311122344444444444
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=115.98 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=39.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINL 74 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~ 74 (903)
.++++|||+|||||.++..+++. +..+|+|+|+|+.|++.|+++.
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~ 80 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSD 80 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTC
T ss_pred CCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhC
Confidence 46789999999999999999987 3459999999999999987654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.1e-10 Score=118.12 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=77.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.. .+ +.++|+.++.
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~--------------------~~--~~~~d~~~~~ 109 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGV--------------------KN--VVEAKAEDLP 109 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTC--------------------SC--EEECCTTSCC
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcC--------------------CC--EEECcHHHCC
Confidence 5789999999999999999887 6799999999999999998751 12 7889988765
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++.+.. ...+ + ...+++++.++|||||.+++.
T Consensus 110 ~~~-~~fD~v~~~~~~~-------------~~~~--------------------~----~~~~l~~~~~~LkpgG~l~~~ 151 (260)
T 2avn_A 110 FPS-GAFEAVLALGDVL-------------SYVE--------------------N----KDKAFSEIRRVLVPDGLLIAT 151 (260)
T ss_dssp SCT-TCEEEEEECSSHH-------------HHCS--------------------C----HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CCEEEEEEcchhh-------------hccc--------------------c----HHHHHHHHHHHcCCCeEEEEE
Confidence 433 4899999642211 0000 0 237899999999999999997
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
...
T Consensus 152 ~~~ 154 (260)
T 2avn_A 152 VDN 154 (260)
T ss_dssp EEB
T ss_pred eCC
Confidence 654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-09 Score=118.79 Aligned_cols=124 Identities=16% Similarity=0.112 Sum_probs=92.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+.
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~d~~~~ 258 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----------------------SGVEHLGGDMFDG 258 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------------------TTEEEEECCTTTC
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----------------------CCCEEEecCCCCC
Confidence 4568999999999999999999999999999999 8898876531 4799999999874
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
. +. . |+|+++-.. +.+ ..+...++++++++.|||||++++
T Consensus 259 ~-p~--~-D~v~~~~vl-------------h~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i 298 (368)
T 3reo_A 259 V-PK--G-DAIFIKWIC-------------HDW-----------------------SDEHCLKLLKNCYAALPDHGKVIV 298 (368)
T ss_dssp C-CC--C-SEEEEESCG-------------GGB-----------------------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred C-CC--C-CEEEEechh-------------hcC-----------------------CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3 32 3 999853111 111 112233789999999999999988
Q ss_pred EeCC-----------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG-----------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~-----------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ......++++++++||+.+++..
T Consensus 299 ~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 354 (368)
T 3reo_A 299 AEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVAS 354 (368)
T ss_dssp EECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCeeeEEEE
Confidence 3221 11244567899999999988743
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=113.82 Aligned_cols=142 Identities=17% Similarity=0.122 Sum_probs=98.6
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
+...||..+...- .+..+|||||||+|.+++.++...|..+++|+|+|+.|++.+++|+..+|+
T Consensus 118 ~lD~fY~~i~~~i---~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~------------- 181 (281)
T 3lcv_B 118 HLDEFYRELFRHL---PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV------------- 181 (281)
T ss_dssp GHHHHHHHHGGGS---CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------------
T ss_pred hHHHHHHHHHhcc---CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------
Confidence 4445566433322 246799999999999999998877889999999999999999999999987
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
+..+.++|+....++. +||++++|- ..+.+.... .| ..
T Consensus 182 ----~~~~~v~D~~~~~p~~--~~DvaL~lk------ti~~Le~q~-------------------------kg-----~g 219 (281)
T 3lcv_B 182 ----PHRTNVADLLEDRLDE--PADVTLLLK------TLPCLETQQ-------------------------RG-----SG 219 (281)
T ss_dssp ----CEEEEECCTTTSCCCS--CCSEEEETT------CHHHHHHHS-------------------------TT-----HH
T ss_pred ----CceEEEeeecccCCCC--CcchHHHHH------HHHHhhhhh-------------------------hH-----HH
Confidence 5889999998776554 899998541 111111110 11 23
Q ss_pred HHHHhhcccCCcEEEEEeC----C-CC-----cHHHHHHHHHHCCCeEEEE
Q 043334 173 VEEGIGVIKPSGIMIFNMG----G-RP-----GQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~----~-~~-----~~~~l~~ll~~~gf~~~~~ 213 (903)
+ .+.+.|+++|.++-.-. + .. -...+++.+.+.|+.+.+.
T Consensus 220 ~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 220 W-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp H-HHHHHSSCSEEEEEEECC-------CHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred H-HHHHHhCCCCEEEeccchhhcCCCcchhhHHHHHHHHHHHhcCCceeee
Confidence 4 67788999999886222 1 11 2234466677788866555
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-09 Score=120.73 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=116.7
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-------------CCEEEEEeCCHHHHHHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-------------PSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-------------~~~V~giDis~~al~~A~~n 73 (903)
.|.|++-...+.+.+... .+.+|+|.+||||.+.+.+.+... ...++|+|+++.+..+|+.|
T Consensus 199 fyTP~~Vv~lmv~l~~p~-----~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 199 FYTPRPVVRFMVEVMDPQ-----LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCHHHHHHHHHHHCCC-----TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred ECCcHHHHHHHHHhhccC-----CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 688886655555555432 467999999999999988766432 24699999999999999999
Q ss_pred HHhcccccCCCCcchhhhcccCCcEEEEEccccccccCC---CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhc
Q 043334 74 LYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDH---DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSL 150 (903)
Q Consensus 74 ~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~---~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l 150 (903)
+..+|.+ ...+..+|.+..+... ..+||+|++||||....... .....+..
T Consensus 274 l~lhg~~----------------~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~-----~~~~~~~~----- 327 (530)
T 3ufb_A 274 LLLHGLE----------------YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKG-----ILGNFPED----- 327 (530)
T ss_dssp HHHHTCS----------------CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHH-----HHTTSCGG-----
T ss_pred HHhcCCc----------------cccccccccccCchhhhcccccceEEEecCCCCcccccc-----ccccCchh-----
Confidence 9998873 4567788876543211 23799999999997432211 11000000
Q ss_pred cccccccccccccccHHHHHHHHHHHhhccc-------CCcEEEEEeCC-----CCcHHHHHHHHHHCCCeEEEEEehhh
Q 043334 151 SNYCALQGFVEDQFGLGLIARAVEEGIGVIK-------PSGIMIFNMGG-----RPGQGVCKRLFERRGFRVDKLWQTKI 218 (903)
Q Consensus 151 ~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lk-------pgG~ll~~~~~-----~~~~~~l~~ll~~~gf~~~~~~~~~~ 218 (903)
..... ....|+..+.+.|| |||++.+.++. ......+++.+-+.+ .+..++
T Consensus 328 ---------~~~~~---~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~-~l~aII---- 390 (530)
T 3ufb_A 328 ---------MQTAE---TAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNF-NLHTIV---- 390 (530)
T ss_dssp ---------GCCCB---HHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHS-EEEEEE----
T ss_pred ---------cccch---hHHHHHHHHHHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcC-EEEEEE----
Confidence 00000 11246666766665 79999997763 222233455554443 232221
Q ss_pred hccCCCcccCCCCcc-eeeeeeccCCcc
Q 043334 219 LQASEPFFASDTDIS-ALVEIEKNSPHR 245 (903)
Q Consensus 219 ~~~~~~~~~~~~~i~-~l~~~e~~~~~~ 245 (903)
......|+..+.+. .++.+.|+.+..
T Consensus 391 -~LP~~~F~~~tgi~t~Il~~~K~~~~~ 417 (530)
T 3ufb_A 391 -RLPEGVFAPYTDIAGNLLFFDRSGPTD 417 (530)
T ss_dssp -ECCTTTTTTTCCCCEEEEEEESSSCCC
T ss_pred -ECCcccCcCCCCCcEEEEEEECCCCCC
Confidence 23445666656665 466677765443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-09 Score=117.83 Aligned_cols=77 Identities=23% Similarity=0.314 Sum_probs=66.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.+++++. +. ++++++++|+.+..
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--~~----------------~~v~vi~gD~l~~~ 109 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--LY----------------NNIEIIWGDALKVD 109 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--HC----------------SSEEEEESCTTTSC
T ss_pred CcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--cC----------------CCeEEEECchhhCC
Confidence 5689999999999999999998 6899999999999999999985 22 47999999999865
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
.... .||+|++|+||..
T Consensus 110 ~~~~-~fD~Iv~NlPy~i 126 (295)
T 3gru_A 110 LNKL-DFNKVVANLPYQI 126 (295)
T ss_dssp GGGS-CCSEEEEECCGGG
T ss_pred cccC-CccEEEEeCcccc
Confidence 4432 6999999999973
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=115.46 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=91.0
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccC
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLL 95 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~ 95 (903)
.+.+.|..... ..++.+|||+|||||.++..+++. +..+|+|+|+++.|++.+.++-
T Consensus 72 Kl~~~l~~~~~-~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~--------------------- 128 (291)
T 3hp7_A 72 KLEKALAVFNL-SVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQD--------------------- 128 (291)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTC---------------------
T ss_pred HHHHHHHhcCC-CccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC---------------------
Confidence 44455554432 246789999999999999998886 4569999999999999864321
Q ss_pred CcEEEE-EccccccccC--CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 96 DRVEFH-ESDLLAYCRD--HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 96 ~~v~~~-~gDl~~~~~~--~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
+++... ..|+...... ...+||+|+++.-++. + ..+
T Consensus 129 ~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~s------l-----------------------------------~~v 167 (291)
T 3hp7_A 129 DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFIS------L-----------------------------------NLI 167 (291)
T ss_dssp TTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSSC------G-----------------------------------GGT
T ss_pred cccceecccCceecchhhCCCCCCCEEEEEeeHhh------H-----------------------------------HHH
Confidence 233333 2344333211 1125999997644431 1 156
Q ss_pred HHHHhhcccCCcEEEEEeCC------------CC---------cHHHHHHHHHHCCCeEEEEEehh
Q 043334 173 VEEGIGVIKPSGIMIFNMGG------------RP---------GQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~~------------~~---------~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+.++.++|||||.+++.+.. .. ....+.+++.+.||.+.......
T Consensus 168 L~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 168 LPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECS
T ss_pred HHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 89999999999999985221 00 22345677889999988875443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-11 Score=126.62 Aligned_cols=95 Identities=25% Similarity=0.360 Sum_probs=73.2
Q ss_pred ccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcc
Q 043334 8 FIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87 (903)
Q Consensus 8 fiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~ 87 (903)
+++..+...+.+.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++|+. +
T Consensus 12 l~~~~~~~~i~~~~~~-----~~~~~VLDiG~G~G~~~~~l~~~--~~~v~~id~~~~~~~~a~~~~~--~--------- 73 (245)
T 1yub_A 12 LTSEKVLNQIIKQLNL-----KETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLK--L--------- 73 (245)
T ss_dssp CCCTTTHHHHHHHCCC-----CSSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTT--T---------
T ss_pred CCCHHHHHHHHHhcCC-----CCCCEEEEEeCCCCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHhc--c---------
Confidence 3444555555554432 25679999999999999999988 4899999999999999987763 1
Q ss_pred hhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCC
Q 043334 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 88 ~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~ 128 (903)
.++++++++|+.+......++| .|++||||...
T Consensus 74 -------~~~v~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 74 -------NTRVTLIHQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp -------CSEEEECCSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred -------CCceEEEECChhhcCcccCCCc-EEEEeCCcccc
Confidence 2479999999988754432479 88999999854
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-09 Score=116.34 Aligned_cols=89 Identities=17% Similarity=0.190 Sum_probs=70.6
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.+...+.+.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.+++++..
T Consensus 16 ~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~--~~~V~avEid~~~~~~~~~~~~~--------------- 73 (255)
T 3tqs_A 16 FVLQKIVSAIHP-----QKTDTLVEIGPGRGALTDYLLTE--CDNLALVEIDRDLVAFLQKKYNQ--------------- 73 (255)
T ss_dssp HHHHHHHHHHCC-----CTTCEEEEECCTTTTTHHHHTTT--SSEEEEEECCHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHhcCC-----CCcCEEEEEcccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHhh---------------
Confidence 445555555442 24689999999999999999987 57999999999999999998843
Q ss_pred cccCCcEEEEEccccccccCC---CCceeEEEECCCCC
Q 043334 92 KTLLDRVEFHESDLLAYCRDH---DIQLERIVGCIPQI 126 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~~---~~~fD~Iv~NpPy~ 126 (903)
.++++++++|+.+..... +++|| ||+||||.
T Consensus 74 ---~~~v~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~ 107 (255)
T 3tqs_A 74 ---QKNITIYQNDALQFDFSSVKTDKPLR-VVGNLPYN 107 (255)
T ss_dssp ---CTTEEEEESCTTTCCGGGSCCSSCEE-EEEECCHH
T ss_pred ---CCCcEEEEcchHhCCHHHhccCCCeE-EEecCCcc
Confidence 147999999998875432 23688 89999997
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=116.58 Aligned_cols=123 Identities=7% Similarity=-0.079 Sum_probs=88.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++|||+|||+|.++..+++. + .+|+++|+|+.+++.|++++... +++ .++++++.+|..+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~--------------~~rv~~~~~D~~~ 135 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKN--------------NKNFTHAKQLLDL 135 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHT--------------CTTEEEESSGGGS
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccC--------------CCeEEEEechHHH
Confidence 4679999999999999998887 6 89999999999999999875321 111 2589999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+. ++||+|+++.+ +. ..+++.+.+.|+|||+++
T Consensus 136 ~~----~~fD~Ii~d~~-----dp--------------------------------------~~~~~~~~~~L~pgG~lv 168 (262)
T 2cmg_A 136 DI----KKYDLIFCLQE-----PD--------------------------------------IHRIDGLKRMLKEDGVFI 168 (262)
T ss_dssp CC----CCEEEEEESSC-----CC--------------------------------------HHHHHHHHTTEEEEEEEE
T ss_pred HH----hhCCEEEECCC-----Ch--------------------------------------HHHHHHHHHhcCCCcEEE
Confidence 75 38999997521 00 036889999999999999
Q ss_pred EEeCCCC-cHHHHHHHHHH--CCCeEEEEEe
Q 043334 188 FNMGGRP-GQGVCKRLFER--RGFRVDKLWQ 215 (903)
Q Consensus 188 ~~~~~~~-~~~~l~~ll~~--~gf~~~~~~~ 215 (903)
+..+... ....++.+.+. .-|.....+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~~ 199 (262)
T 2cmg_A 169 SVAKHPLLEHVSMQNALKNMGGVFSVAMPFV 199 (262)
T ss_dssp EEEECTTTCHHHHHHHHHHHHTTCSEEEEEC
T ss_pred EEcCCcccCHHHHHHHHHHHHHhCCceEEEE
Confidence 9765432 22233333222 2376665543
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.7e-08 Score=111.56 Aligned_cols=181 Identities=9% Similarity=0.056 Sum_probs=124.0
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC----CCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCC
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE----GGTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVG 730 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p----GD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~ 730 (903)
.+.+|++. .|++... ..++++|++.+...++.+.+++ ||.|+++..++.+....+...|++++.++... ++.
T Consensus 121 l~ld~L~~-~G~~~~~--~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl~Pv~V~p~~d~~~ 197 (501)
T 3hl2_A 121 LVLDIIKL-AGVHTVA--NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDE 197 (501)
T ss_dssp HHHHHHHH-TTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECEEEETTE
T ss_pred HHHHHHHH-cCCCCCC--cEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCCeEEEEeeeecccc
Confidence 34566666 4998652 5899999997776667777764 49999999999999999999999999998732 235
Q ss_pred cccCHHHHHHHhhcCC--CcEEE-EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc-cCCCCCCCCchhh
Q 043334 731 FKMTEKTLVTILETVK--KPWVY-ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLE-FNYEGWGGWDLEG 806 (903)
Q Consensus 731 f~ld~~~L~~~l~~~~--~~~vi-l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~-f~~~~~s~~s~~~ 806 (903)
+.+|++.+++++++.. ..+++ .+.|+ |-.|.+- ++++|.++|++||+++++|++|+... |.. .++.
T Consensus 198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~-y~p~~~d---dI~eIaeIch~~gIpllVDeAhGah~~~~~------~lp~ 267 (501)
T 3hl2_A 198 LRTDLKAVEAKVQELGPDCILCIHSTTSC-FAPRVPD---RLEELAVICANYDIPHIVNNAYGVQSSKCM------HLIQ 267 (501)
T ss_dssp EEECHHHHHHHHHHHCGGGEEEEEEECSC-CTTBCCC---CHHHHHHHHHHHTCCEEEECTTCTTCHHHH------HHHH
T ss_pred cCCCHHHHHHHHHhcCCCcEEEEEecCCC-CCCcccc---cHHHHHHHHHHcCCeEEEeCcchhhhhhhh------hhHH
Confidence 7899999999997642 12333 34444 5334444 49999999999999999999995321 110 1111
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
....+.. -.+++.|.-|.+-.| +..|.+...++++++++...-
T Consensus 268 sA~~~Gr------AD~vVqS~HK~llvp-IGG~ii~~~d~e~l~~~~~~y 310 (501)
T 3hl2_A 268 QGARVGR------IDAFVQSLDKNFMVP-VGGAIIAGFNDSFIQEISKMY 310 (501)
T ss_dssp HHHHHSC------CCEEEEEHHHHHCCC-SSCEEEEESCHHHHHHHHHTS
T ss_pred HHHhcCC------CcEEEecccccceee-cCceEEEeCCHHHHHHHHHhC
Confidence 1111211 357899999998554 122344466666888776543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.9e-09 Score=118.45 Aligned_cols=124 Identities=16% Similarity=0.074 Sum_probs=91.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ ++++++.+|+.+.
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~ 256 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----------------------PGVTHVGGDMFKE 256 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------------------TTEEEEECCTTTC
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----------------------CCeEEEeCCcCCC
Confidence 3568999999999999999999999999999999 8888776531 4799999999883
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+. . |+|++.-. .+.+ ..+...++++++++.|||||++++
T Consensus 257 -~p~--~-D~v~~~~v-------------lh~~-----------------------~d~~~~~~L~~~~~~L~pgG~l~i 296 (364)
T 3p9c_A 257 -VPS--G-DTILMKWI-------------LHDW-----------------------SDQHCATLLKNCYDALPAHGKVVL 296 (364)
T ss_dssp -CCC--C-SEEEEESC-------------GGGS-----------------------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred -CCC--C-CEEEehHH-------------hccC-----------------------CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 332 3 99984211 1111 112234789999999999999988
Q ss_pred EeCC-----------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 NMGG-----------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~~~~-----------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
.... ....+.++++++++||+.+++..
T Consensus 297 ~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 352 (364)
T 3p9c_A 297 VQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTY 352 (364)
T ss_dssp EECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred EEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 3211 11244567889999999888743
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.91 E-value=8e-10 Score=124.87 Aligned_cols=80 Identities=19% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc--ccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN--ALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~--gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+.+|||+|||+|..++.+++. +.+|+|+|+|+.|++.|++|+..+ |+ ++++++++|+.++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl----------------~~i~~i~~Da~~~ 155 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEG----------------KDVNILTGDFKEY 155 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTT----------------CEEEEEESCGGGS
T ss_pred CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCC----------------CcEEEEECcHHHh
Confidence 789999999999999999876 679999999999999999999887 65 4899999999886
Q ss_pred ccC-CCCceeEEEECCCCCCC
Q 043334 109 CRD-HDIQLERIVGCIPQILN 128 (903)
Q Consensus 109 ~~~-~~~~fD~Iv~NpPy~~~ 128 (903)
... ...+||+|++||||...
T Consensus 156 L~~~~~~~fDvV~lDPPrr~~ 176 (410)
T 3ll7_A 156 LPLIKTFHPDYIYVDPARRSG 176 (410)
T ss_dssp HHHHHHHCCSEEEECCEEC--
T ss_pred hhhccCCCceEEEECCCCcCC
Confidence 332 11279999999999864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-10 Score=118.70 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=67.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCH-------HHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEE
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINP-------RAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~-------~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
++.+|||+|||+|.+++.+|.. +.+|+|+|+|+ ++++.|++|+..+++. .++++++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~---------------~ri~~~~ 145 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA---------------ARINLHF 145 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH---------------TTEEEEE
T ss_pred CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc---------------cCeEEEE
Confidence 5679999999999999999986 67999999999 9999999999888762 4699999
Q ss_pred ccccccccCC-C--CceeEEEECCCCCC
Q 043334 103 SDLLAYCRDH-D--IQLERIVGCIPQIL 127 (903)
Q Consensus 103 gDl~~~~~~~-~--~~fD~Iv~NpPy~~ 127 (903)
+|+.++.... + ++||+|++||||..
T Consensus 146 ~d~~~~l~~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 146 GNAAEQMPALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp SCHHHHHHHHHHHHCCCSEEEECCCC--
T ss_pred CCHHHHHHhhhccCCCccEEEECCCCCC
Confidence 9998864311 1 27999999999965
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-09 Score=119.35 Aligned_cols=124 Identities=16% Similarity=0.095 Sum_probs=91.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.+|..+++++|+ +.+++.|++. ++++++.+|+.+.
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~d~~~~ 264 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----------------------SGIEHVGGDMFAS 264 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----------------------TTEEEEECCTTTC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----------------------CCCEEEeCCcccC
Confidence 4568999999999999999999998899999999 9999877531 3699999999873
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.+ .||+|+++-.... + .......+++++.++|||||++++
T Consensus 265 -~~---~~D~v~~~~~lh~-------------~-----------------------~d~~~~~~l~~~~~~L~pgG~l~i 304 (372)
T 1fp1_D 265 -VP---QGDAMILKAVCHN-------------W-----------------------SDEKCIEFLSNCHKALSPNGKVII 304 (372)
T ss_dssp -CC---CEEEEEEESSGGG-------------S-----------------------CHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CC---CCCEEEEeccccc-------------C-----------------------CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 22 3999986422111 1 011123789999999999999998
Q ss_pred E---eCC-------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 189 N---MGG-------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 189 ~---~~~-------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
. .+. ......+++++++.||+.++.+.
T Consensus 305 ~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 305 VEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp EEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred EEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 4 111 11344567788899998877743
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=116.28 Aligned_cols=76 Identities=24% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++ +|||+|||+|.++..+++. +.+|+|+|+|++|++.+++++. ..+++++++|+.+..
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~--~~~V~avEid~~~~~~l~~~~~-------------------~~~v~vi~~D~l~~~ 104 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEA--GAEVTAIEKDLRLRPVLEETLS-------------------GLPVRLVFQDALLYP 104 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHT--TCCEEEEESCGGGHHHHHHHTT-------------------TSSEEEEESCGGGSC
T ss_pred CC-eEEEEeCchHHHHHHHHHc--CCEEEEEECCHHHHHHHHHhcC-------------------CCCEEEEECChhhCC
Confidence 46 9999999999999999987 5799999999999999998873 137999999999875
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
......+|.|++|+||..
T Consensus 105 ~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 105 WEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GGGSCTTEEEEEEECSSC
T ss_pred hhhccCccEEEecCcccc
Confidence 543226899999999985
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.3e-09 Score=111.40 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=64.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.+++++... ++++++++|+.+.
T Consensus 29 ~~~~~VLDiG~G~G~lt~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~------------------~~v~~~~~D~~~~ 88 (244)
T 1qam_A 29 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH------------------DNFQVLNKDILQF 88 (244)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC------------------CSEEEECCCGGGC
T ss_pred CCCCEEEEEeCCchHHHHHHHHc--CCeEEEEECCHHHHHHHHHhhccC------------------CCeEEEEChHHhC
Confidence 35789999999999999999998 489999999999999999887321 4799999999987
Q ss_pred ccCCCCceeEEEECCCCC
Q 043334 109 CRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~ 126 (903)
.......| .|++||||.
T Consensus 89 ~~~~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 89 KFPKNQSY-KIFGNIPYN 105 (244)
T ss_dssp CCCSSCCC-EEEEECCGG
T ss_pred CcccCCCe-EEEEeCCcc
Confidence 55432245 689999997
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-09 Score=106.56 Aligned_cols=108 Identities=20% Similarity=0.302 Sum_probs=81.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+ +.+|+|+|+|+. . +.+.++|+.+..
T Consensus 67 ~~~~vLDiG~G~G~~~~~l-----~~~v~~~D~s~~------------~-------------------~~~~~~d~~~~~ 110 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI-----RNPVHCFDLASL------------D-------------------PRVTVCDMAQVP 110 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC-----CSCEEEEESSCS------------S-------------------TTEEESCTTSCS
T ss_pred CCCeEEEECCcCCHHHHHh-----hccEEEEeCCCC------------C-------------------ceEEEeccccCC
Confidence 5689999999999998876 268999999987 1 346788888764
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++..... .+ ...+++++.++|+|||.+++.
T Consensus 111 ~~~-~~fD~v~~~~~l~~-~~--------------------------------------~~~~l~~~~~~L~~gG~l~i~ 150 (215)
T 2zfu_A 111 LED-ESVDVAVFCLSLMG-TN--------------------------------------IRDFLEEANRVLKPGGLLKVA 150 (215)
T ss_dssp CCT-TCEEEEEEESCCCS-SC--------------------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCC-CCEeEEEEehhccc-cC--------------------------------------HHHHHHHHHHhCCCCeEEEEE
Confidence 333 48999998654431 10 126799999999999999986
Q ss_pred eCCC--CcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGGR--PGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~~--~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... .....+.+++++.||.++..
T Consensus 151 ~~~~~~~~~~~~~~~l~~~Gf~~~~~ 176 (215)
T 2zfu_A 151 EVSSRFEDVRTFLRAVTKLGFKIVSK 176 (215)
T ss_dssp ECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred EcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 4432 35677788999999998775
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-09 Score=117.17 Aligned_cols=123 Identities=14% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++. ++++++.+|+.+..
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~d~~~~~ 244 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----------------------NNLTYVGGDMFTSI 244 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----------------------TTEEEEECCTTTCC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----------------------CCcEEEeccccCCC
Confidence 568999999999999999999999999999999 9999877531 35999999997732
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC---CcEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP---SGIM 186 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp---gG~l 186 (903)
+ .||+|+++-..+. + .......+++++.++||| ||++
T Consensus 245 -p---~~D~v~~~~~lh~-------------~-----------------------~d~~~~~~l~~~~~~L~p~~~gG~l 284 (352)
T 1fp2_A 245 -P---NADAVLLKYILHN-------------W-----------------------TDKDCLRILKKCKEAVTNDGKRGKV 284 (352)
T ss_dssp -C---CCSEEEEESCGGG-------------S-----------------------CHHHHHHHHHHHHHHHSGGGCCCEE
T ss_pred -C---CccEEEeehhhcc-------------C-----------------------CHHHHHHHHHHHHHhCCCCCCCcEE
Confidence 2 4999986422211 1 011123789999999999 9998
Q ss_pred EEEeC---C------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMG---G------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~---~------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++... . ......+++++++.||+.++.+.
T Consensus 285 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 285 TIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKISP 340 (352)
T ss_dssp EEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe
Confidence 88421 1 11235667889999999887743
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.9e-09 Score=117.13 Aligned_cols=96 Identities=15% Similarity=0.192 Sum_probs=72.2
Q ss_pred CCCeEEEeCCc------cCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEE
Q 043334 30 KDKTVAELGCG------NGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 30 ~~~~VLDlGCG------tG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
++.+||||||| +|..++.+++.+ |+.+|+|+|+|+.|. . . .+++++++
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~----------------~~rI~fv~ 270 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-D----------------ELRIRTIQ 270 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-C----------------BTTEEEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-c----------------CCCcEEEE
Confidence 56899999999 777888887764 788999999999972 0 1 15899999
Q ss_pred ccccccccC-----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 103 SDLLAYCRD-----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 103 gDl~~~~~~-----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
+|+.++... ..++||+|+++-- +.. .....+|++++
T Consensus 271 GDa~dlpf~~~l~~~d~sFDlVisdgs-------H~~--------------------------------~d~~~aL~el~ 311 (419)
T 3sso_A 271 GDQNDAEFLDRIARRYGPFDIVIDDGS-------HIN--------------------------------AHVRTSFAALF 311 (419)
T ss_dssp CCTTCHHHHHHHHHHHCCEEEEEECSC-------CCH--------------------------------HHHHHHHHHHG
T ss_pred ecccccchhhhhhcccCCccEEEECCc-------ccc--------------------------------hhHHHHHHHHH
Confidence 999886432 0238999996410 111 11337899999
Q ss_pred hcccCCcEEEEE
Q 043334 178 GVIKPSGIMIFN 189 (903)
Q Consensus 178 ~~LkpgG~ll~~ 189 (903)
++|||||++++.
T Consensus 312 rvLKPGGvlVi~ 323 (419)
T 3sso_A 312 PHVRPGGLYVIE 323 (419)
T ss_dssp GGEEEEEEEEEE
T ss_pred HhcCCCeEEEEE
Confidence 999999999994
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-09 Score=116.43 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=76.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEE--Eccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH--ESDL 105 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~--~gDl 105 (903)
..++.+|||+|||+|.++..+++. .+|+|+|+++ |+..++++ ... ......++.++ ++|+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~----~~~----------~~~~~~~v~~~~~~~D~ 141 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK----PRL----------VETFGWNLITFKSKVDV 141 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC----CCC----------CCCTTGGGEEEECSCCG
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc----hhh----------hhhcCCCeEEEeccCcH
Confidence 346889999999999999999886 5899999998 64333211 110 00011268999 9999
Q ss_pred cccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc-
Q 043334 106 LAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG- 184 (903)
Q Consensus 106 ~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG- 184 (903)
.+++ .++||+|++|..++ ... .. ... ...+ .+++++.++|||||
T Consensus 142 ~~l~---~~~fD~Vvsd~~~~-~~~--~~---~d~-------------------------~~~l-~~L~~~~r~LkpGG~ 186 (276)
T 2wa2_A 142 TKME---PFQADTVLCDIGES-NPT--AA---VEA-------------------------SRTL-TVLNVISRWLEYNQG 186 (276)
T ss_dssp GGCC---CCCCSEEEECCCCC-CSC--HH---HHH-------------------------HHHH-HHHHHHHHHHHHSTT
T ss_pred hhCC---CCCcCEEEECCCcC-CCc--hh---hhH-------------------------HHHH-HHHHHHHHHhccCCC
Confidence 8864 23899999986522 111 00 000 0001 36889999999999
Q ss_pred -EEEEEeCCCCcH
Q 043334 185 -IMIFNMGGRPGQ 196 (903)
Q Consensus 185 -~ll~~~~~~~~~ 196 (903)
.|++.+......
T Consensus 187 ~~~v~~~~~~~~~ 199 (276)
T 2wa2_A 187 CGFCVKVLNPYSC 199 (276)
T ss_dssp CEEEEEESCCCSH
T ss_pred cEEEEEeCCCCch
Confidence 999976654444
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-09 Score=115.20 Aligned_cols=115 Identities=11% Similarity=-0.023 Sum_probs=75.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEE--Ecccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH--ESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~--~gDl~ 106 (903)
.++.+|||+|||+|.++..+++. .+|+|+|+++ |+..++++ ... ......++.++ ++|+.
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~----~~~----------~~~~~~~v~~~~~~~D~~ 134 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV----PRI----------TESYGWNIVKFKSRVDIH 134 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC----CCC----------CCBTTGGGEEEECSCCTT
T ss_pred CCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh----hhh----------hhccCCCeEEEecccCHh
Confidence 46889999999999999998876 6899999998 54322211 110 00011268999 99998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc--
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG-- 184 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG-- 184 (903)
++. .++||+|+++..++ ... .. ..+ ...+ .+++.+.++|||||
T Consensus 135 ~l~---~~~fD~V~sd~~~~-~~~--~~---~d~-------------------------~~~l-~~L~~~~r~LkpGG~~ 179 (265)
T 2oxt_A 135 TLP---VERTDVIMCDVGES-SPK--WS---VES-------------------------ERTI-KILELLEKWKVKNPSA 179 (265)
T ss_dssp TSC---CCCCSEEEECCCCC-CSC--HH---HHH-------------------------HHHH-HHHHHHHHHHHHCTTC
T ss_pred HCC---CCCCcEEEEeCccc-CCc--cc---hhH-------------------------HHHH-HHHHHHHHHhccCCCe
Confidence 864 23899999975522 111 00 000 0001 37889999999999
Q ss_pred EEEEEeCCCCcH
Q 043334 185 IMIFNMGGRPGQ 196 (903)
Q Consensus 185 ~ll~~~~~~~~~ 196 (903)
.|++.+......
T Consensus 180 ~fv~kv~~~~~~ 191 (265)
T 2oxt_A 180 DFVVKVLCPYSV 191 (265)
T ss_dssp EEEEEESCTTSH
T ss_pred EEEEEeCCCCCh
Confidence 999976654444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=104.48 Aligned_cols=83 Identities=14% Similarity=0.052 Sum_probs=69.1
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
+...||..+-.. .++.+|||+|||+|.+++.++ ++.+++|+|||+.|++.+++++..++.
T Consensus 92 ~ld~fY~~i~~~----~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~------------- 151 (253)
T 3frh_A 92 ELDTLYDFIFSA----ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDW------------- 151 (253)
T ss_dssp GHHHHHHHHTSS----CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTC-------------
T ss_pred hHHHHHHHHhcC----CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCC-------------
Confidence 445566655544 256799999999999999977 688999999999999999999988875
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEE
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVG 121 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~ 121 (903)
+..+..+|....+++. +||+|+.
T Consensus 152 ----~~~~~v~D~~~~~~~~--~~DvvLl 174 (253)
T 3frh_A 152 ----DFTFALQDVLCAPPAE--AGDLALI 174 (253)
T ss_dssp ----EEEEEECCTTTSCCCC--BCSEEEE
T ss_pred ----CceEEEeecccCCCCC--CcchHHH
Confidence 6899999998876554 8999985
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=7.8e-09 Score=112.70 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=68.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..+++.+++.+|+|+|+|++|++.|++|+..++ ++++++++|+.++.
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-----------------~~v~~v~~d~~~l~ 88 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----------------DRVSLFKVSYREAD 88 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----------------TTEEEEECCGGGHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEECCHHHHH
Confidence 5689999999999999999999877899999999999999999986654 37999999998763
Q ss_pred c--C--CCCceeEEEECCCCC
Q 043334 110 R--D--HDIQLERIVGCIPQI 126 (903)
Q Consensus 110 ~--~--~~~~fD~Iv~NpPy~ 126 (903)
. . ...+||.|++|||+.
T Consensus 89 ~~l~~~g~~~~D~Vl~D~gvS 109 (301)
T 1m6y_A 89 FLLKTLGIEKVDGILMDLGVS 109 (301)
T ss_dssp HHHHHTTCSCEEEEEEECSCC
T ss_pred HHHHhcCCCCCCEEEEcCccc
Confidence 1 1 113799999999875
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=109.78 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=68.1
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP--SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~--~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~ 89 (903)
.+...+.+.+.. .++.+|||+|||+|.++..+++..+. .+|+|+|+|++|++.++++. .
T Consensus 29 ~i~~~iv~~~~~-----~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~---------- 89 (279)
T 3uzu_A 29 GVIDAIVAAIRP-----ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----G---------- 89 (279)
T ss_dssp HHHHHHHHHHCC-----CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----G----------
T ss_pred HHHHHHHHhcCC-----CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----C----------
Confidence 444454554432 25689999999999999999998532 34999999999999999883 1
Q ss_pred hhcccCCcEEEEEccccccccCCC---C--ceeEEEECCCCC
Q 043334 90 EKKTLLDRVEFHESDLLAYCRDHD---I--QLERIVGCIPQI 126 (903)
Q Consensus 90 ~~~~~~~~v~~~~gDl~~~~~~~~---~--~fD~Iv~NpPy~ 126 (903)
++++++++|+.+...... . ..+.||+|+||.
T Consensus 90 ------~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 90 ------ELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp ------GGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHH
T ss_pred ------CCcEEEECChhcCChhHhcccccCCceEEEEccCcc
Confidence 379999999988754321 0 235799999998
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-08 Score=111.10 Aligned_cols=185 Identities=12% Similarity=0.126 Sum_probs=128.5
Q ss_pred CCCcHHHHHHHHHHHHccCC---------CCC--chHHHHHHHHHHHhhcCCCCCCCCcEEe-cCchHHHHHHHHHHhcc
Q 043334 627 LPIPSLVKAAIFESFARQNM---------SES--EIDVTPSIQQYIKSNFGFPIDINAEFIY-ADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~---------~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~v-t~Gs~~al~~ll~~l~~ 694 (903)
.+.|+.|++++.+.+..+.. ..+ ..+..+..++.+++.+|.+.+ + +|++ |+|+++++++++..++.
T Consensus 22 ~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~-~-evif~t~~~T~a~n~a~~~l~~ 99 (377)
T 3e77_A 22 SMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDN-Y-KVIFLQGGGCGQFSAVPLNLIG 99 (377)
T ss_dssp CCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTT-E-EEEEESSHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCC-C-eEEEEcCchHHHHHHHHHhccC
Confidence 56899999999987754321 112 234456677888888888532 2 6887 68999999999999987
Q ss_pred C--CCeEEEcCCCcHHH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 695 E--GGTLCFPAGSNGNY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 695 p--GD~Vlv~~P~y~~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
+ ||+|++..-++... ...++..|..++.++.+.. +..+++.++..+++++ ++|.+++-. |.||.+.+.
T Consensus 100 ~~~Gd~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~--~~~~~~~~~~~i~~~t-~lV~~~h~e-t~tG~~~pi---- 171 (377)
T 3e77_A 100 LKAGRCADYVVTGAWSAKAAEEAKKFGTINIVHPKLGS--YTKIPDPSTWNLNPDA-SYVYYCANE-TVHGVEFDF---- 171 (377)
T ss_dssp GSTTCEEEECCCSHHHHHHHHHHTTTSEEEECSCCCSS--SCSCCCGGGCCCCTTC-SCEEEESEE-TTTTEECSS----
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHhCCceEEeccCCC--cCCCCChHHhccCCCc-cEEEEeCcc-CchheEchh----
Confidence 6 99988776655443 3345567888777777543 3356666666677766 478888776 888999984
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+|+++|+++++|-+-+ +...+. + +... . +++.|--|.+|.+| +|+++..++
T Consensus 172 ----i~~~~~~~~~vD~~q~---~g~~~i---d-------~~~~-----~-~~~~s~~K~~gp~G--~g~l~~~~~ 222 (377)
T 3e77_A 172 ----IPDVKGAVLVCDMSSN---FLSKPV---D-------VSKF-----G-VIFAGAQKNVGSAG--VTVVIVRDD 222 (377)
T ss_dssp ----CCCCTTCCEEEECTTT---TTSSCC---C-------GGGC-----S-EEEEEGGGTTSCTT--CEEEEEETT
T ss_pred ----hhccCCCEEEEEcccc---cCCCCC---c-------hhhc-----C-EEEEecccccCCCc--cEEEEEcHH
Confidence 4778999999999874 222221 1 1121 2 46788899999888 688887654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=114.13 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=90.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ . ++++++.+|+.+ .
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~----------------~~v~~~~~d~~~-~ 248 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N----------------ENLNFVGGDMFK-S 248 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C----------------SSEEEEECCTTT-C
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C----------------CCcEEEeCccCC-C
Confidence 457999999999999999999999899999999 788876653 1 359999999987 3
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC---CcEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP---SGIM 186 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp---gG~l 186 (903)
.+ +||+|+++-..+..+ ......+++++.+.|+| ||++
T Consensus 249 ~~---~~D~v~~~~vlh~~~------------------------------------d~~~~~~l~~~~~~L~p~~~gG~l 289 (358)
T 1zg3_A 249 IP---SADAVLLKWVLHDWN------------------------------------DEQSLKILKNSKEAISHKGKDGKV 289 (358)
T ss_dssp CC---CCSEEEEESCGGGSC------------------------------------HHHHHHHHHHHHHHTGGGGGGCEE
T ss_pred CC---CceEEEEcccccCCC------------------------------------HHHHHHHHHHHHHhCCCCCCCcEE
Confidence 22 599998643222111 11123789999999999 9998
Q ss_pred EEEeC---C-------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 187 IFNMG---G-------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 187 l~~~~---~-------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
++... . ......+++++++.||+.++++.
T Consensus 290 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 290 IIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp EEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 88321 1 11344567889999999887743
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-08 Score=104.25 Aligned_cols=111 Identities=14% Similarity=0.112 Sum_probs=74.6
Q ss_pred CeEEEeCCcc---CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 32 KTVAELGCGN---GWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 32 ~~VLDlGCGt---G~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|||||||+ |.....+.+..|+.+|+++|.|+.|++.|++++...+ ..+++++++|+.++
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~----------------~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP----------------EGRTAYVEADMLDP 143 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS----------------SSEEEEEECCTTCH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC----------------CCcEEEEEecccCh
Confidence 6899999997 3343333445688999999999999999998874322 14799999999886
Q ss_pred cc--CC---CCcee-----EEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhh
Q 043334 109 CR--DH---DIQLE-----RIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIG 178 (903)
Q Consensus 109 ~~--~~---~~~fD-----~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~ 178 (903)
.. .. ...|| .|++|--.+. +... .. ...+++++.+
T Consensus 144 ~~~l~~~~~~~~~D~~~p~av~~~avLH~------l~d~--------------------------~~---p~~~l~~l~~ 188 (277)
T 3giw_A 144 ASILDAPELRDTLDLTRPVALTVIAIVHF------VLDE--------------------------DD---AVGIVRRLLE 188 (277)
T ss_dssp HHHHTCHHHHTTCCTTSCCEEEEESCGGG------SCGG--------------------------GC---HHHHHHHHHT
T ss_pred hhhhcccccccccCcCCcchHHhhhhHhc------CCch--------------------------hh---HHHHHHHHHH
Confidence 21 00 11455 4555422221 1100 00 1267999999
Q ss_pred cccCCcEEEEEeCCC
Q 043334 179 VIKPSGIMIFNMGGR 193 (903)
Q Consensus 179 ~LkpgG~ll~~~~~~ 193 (903)
.|+|||+|++.+...
T Consensus 189 ~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 189 PLPSGSYLAMSIGTA 203 (277)
T ss_dssp TSCTTCEEEEEEECC
T ss_pred hCCCCcEEEEEeccC
Confidence 999999999975543
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-07 Score=104.61 Aligned_cols=259 Identities=13% Similarity=0.076 Sum_probs=163.8
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...||+..| ...++ ..|.+.+++.+.+.......+...+...+++.+.+.+.. .+ .+.++++++++...
T Consensus 83 D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~~~~~~~~~~~lae~l~~~~p~-~~---~v~f~~SGsEA~e~ 158 (454)
T 4ao9_A 83 DADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGRLARLICERFPQ-IE---QLRFTNSGTEANLM 158 (454)
T ss_dssp ETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSCCCSEESSHHHHHHHHHHHSTT-CS---EEEEESSHHHHHHH
T ss_pred ECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCCccCCcHHHHHHHHHHHHhCCC-CC---EEEEeCchHHHHHH
Confidence 4577889998644 44455 578899999998876544444455566777888776542 22 79999988888888
Q ss_pred HHHHhcc--CCCeEEEcCCCcHHHHHHH------HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC-CcEEEEECCCCC
Q 043334 688 LVLCCIL--EGGTLCFPAGSNGNYVSAA------RFLKANIVNIPTESEVGFKMTEKTLVTILETVK-KPWVYISGPTIN 758 (903)
Q Consensus 688 ll~~l~~--pGD~Vlv~~P~y~~~~~~~------~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~-~~~vil~~P~~N 758 (903)
++..... ..+.|+....+|-.....+ .........+|. -|.+.+++.+.... ..+.+|.-|-+.
T Consensus 159 AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~-------nd~~~l~~~l~~~~~~iAavIvEPv~g 231 (454)
T 4ao9_A 159 ALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPY-------NDAQTARAQIERHGPEIAVVLVEPMQG 231 (454)
T ss_dssp HHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECT-------TCHHHHHHHHHHTGGGEEEEEECSEES
T ss_pred HHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCC-------chHHHHHHHHhhcCCceEEEEeccccC
Confidence 7765532 2357777777765422111 001122333332 26888888887542 125566667655
Q ss_pred CcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
-.|.+ .+.+.+++|.++|++||+++|.||+..+ -.+.. + ....+.-.| . +-+++|.+| .|+.
T Consensus 232 ~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~~---~----a~e~~gv~P-----D--i~t~gK~lg-gG~P 294 (454)
T 4ao9_A 232 ASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAPH---G----LANKLGIRS-----D--LTTLGKYIG-GGMS 294 (454)
T ss_dssp TTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGSTT---C----HHHHHTCCC-----S--EEEEEGGGG-TTSS
T ss_pred CCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCccc---c----chhccCCCC-----c--EEEeccccC-CCCc
Confidence 56755 4678899999999999999999999852 11211 1 112222222 2 237889997 7899
Q ss_pred eeEEEeCcHHHHHHHHhC-----C-CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAFSSF-----P-GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~-----~-~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+|.+++..+ +++.+... + .+.+.++.+-.++.+.|+.-.. +++.+.+.++-+.++++.+.
T Consensus 295 iga~~~~~e-i~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 295 FGAFGGRAD-VMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNA 360 (454)
T ss_dssp CEEEEECHH-HHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeHHH-HHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHH
Confidence 999999987 88877532 1 2566678888888888853222 33445555555556555544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 903 | ||||
| d1gdea_ | 388 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 3e-11 | |
| d1b5pa_ | 382 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {The | 4e-11 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 7e-06 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 3e-05 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-05 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 3e-05 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 9e-05 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-04 | |
| d1iaya_ | 428 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 4e-04 | |
| d1m7ya_ | 431 | c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate sy | 4e-04 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 5e-04 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.002 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 0.002 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.003 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.003 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 0.004 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.004 |
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 64.1 bits (155), Expect = 3e-11
Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 6/188 (3%)
Query: 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPS----IQQYIKSNFGFPIDI 671
+I + + + P +K E+ + I + +K G D
Sbjct: 26 DVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADP 85
Query: 672 NAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF 731
E + + F + + +G + P + +Y A V +PT E F
Sbjct: 86 KTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEF 145
Query: 732 KMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSG 791
++ L + T K + I+ P NPTG + + K++E I ++ V+ D +
Sbjct: 146 RLNVDELKKYV-TDKTRALIINSPC-NPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEH 203
Query: 792 LEFNYEGW 799
++
Sbjct: 204 FIYDDARH 211
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} Length = 382 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Score = 63.6 bits (154), Expect = 4e-11
Identities = 46/275 (16%), Positives = 96/275 (34%), Gaps = 26/275 (9%)
Query: 591 MIGFSRSAISVLNSAELSITETPN----SG--LIHMDVDQSFLPIPSLVKAAIFESFARQ 644
M G SR ++ SA +++ G L+ + + P VK A + A+
Sbjct: 1 MRGLSRRVQAMKPSATVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQG 60
Query: 645 NMSESEIDVTPS----IQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLC 700
+ P + + + G + + SQ+LFN L + G +
Sbjct: 61 KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFN-LFQAILDPGDEVI 119
Query: 701 FPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPT 760
+ +Y RF +V + T E GF + + + T + + ++ P NPT
Sbjct: 120 VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAI-TPRTKALVVNSPN-NPT 177
Query: 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFN 820
G +Y + +E + + ++ +V D + L + E + +
Sbjct: 178 GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE------------HFSPGRVAPEH 225
Query: 821 VSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF 855
+ G + + G+ +++ A +S
Sbjct: 226 TLTVNGAAKAFAMTGWRIGYACGP-KEVIKAMASV 259
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.7 bits (110), Expect = 7e-06
Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 5/128 (3%)
Query: 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLY 75
T+ + + + KDK V ++G G G + + A K KV G++ + + I
Sbjct: 20 TYRNSMFHNRH-LFKDKVVLDVGSGTGILCMFAA-KAGARKVIGIECSSISDYAVKIVKA 77
Query: 76 LNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMS 135
E+ ++ +++ + + E ++ + +
Sbjct: 78 NKLDHVVTIIKGKVEE---VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDG 134
Query: 136 KIITENAS 143
I + A+
Sbjct: 135 LIFPDRAT 142
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 3e-05
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73
++ + + ++P I KDK V ++GCG G +++ A K KV G+D + + I
Sbjct: 22 SYRDFIYQNPH-IFKDKVVLDVGCGTGILSMFAA-KAGAKKVLGVDQSEILYQAMDII 77
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
++ V ++ G G + A A KV D+ ++++ + N + DA
Sbjct: 15 GNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 72
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPN 130
E+ D + +A + V ++L
Sbjct: 73 EQMPFTDERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKG 111
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 3/116 (2%)
Query: 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLY 75
++ + ++ D + KDK V ++GCG G +++ A+ V G+D++ +
Sbjct: 25 SYRNAIIQNKD-LFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVEL 82
Query: 76 LNALDEKGQPIYDAEKKTLLDRVEFH-ESDLLAYCRDHDIQLERIVGCIPQILNPN 130
D+ E L S+ + Y ++ ++ ++ L
Sbjct: 83 NGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG 138
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.5 bits (102), Expect = 9e-05
Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 5/109 (4%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
+ K T +LG G G + A + + +G +I A ++ + +E +
Sbjct: 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT-----ILQYEELKKRCK 268
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSK 136
+ +S + I ++ + + + + +
Sbjct: 269 LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 7/111 (6%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87
+ D +LG G G + + +A YG++ + + K
Sbjct: 149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 208
Query: 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKII 138
D L+ I ++ P D K
Sbjct: 209 H-------AEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKER 252
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Length = 428 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Score = 41.2 bits (95), Expect = 4e-04
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 340 YEPPAGSKRFRNLIADFMKKYH--HIPLNADNVVVFPSRAVAIENALRLF 387
++ G FR IA FM+K + + + VV+ A E +
Sbjct: 79 FQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL 128
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} Length = 431 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Score = 41.2 bits (95), Expect = 4e-04
Identities = 15/114 (13%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 295 KFLKNGFHEIS------------SSLDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEP 342
++ KN +HE+ + L + +A ++
Sbjct: 23 EYEKNPYHEVHNTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQD 82
Query: 343 PAGSKRFRNLIADFMKKYH--HIPLNADNVVVFPSRAVAIENALRLFSPRLAIV 394
G F+ + DFM + + + +++V+ A E + + V
Sbjct: 83 YHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAV 136
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.1 bits (93), Expect = 5e-04
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIR 68
+ D+ V LG +G +A+ +Y ++ + +
Sbjct: 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE 94
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.6 bits (89), Expect = 0.002
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIR 68
I +D + LG G +A+ VY ++ PR +R
Sbjct: 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR 112
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 38.3 bits (88), Expect = 0.002
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
K+ ++GCG G +T+ + +VY +D NP AI + +NL + L + +
Sbjct: 33 KNDVAVDVGCGTGGVTLEL--AGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYS 149
+ L +A +L+ I+ I L P + I E +
Sbjct: 91 APEALCK----IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAILLETKFEAMEC 146
Query: 150 LSNY 153
L +
Sbjct: 147 LRDL 150
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 38.7 bits (89), Expect = 0.002
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 11/122 (9%)
Query: 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISW 71
++ + L I K + + GCG G++ + + SK G+D + +
Sbjct: 10 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEAR 69
Query: 72 INLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD---HDIQLERIVGCIPQILN 128
P + +E ++ +A C H E ++ + +
Sbjct: 70 ELFR-------LLPYDSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVK 122
Query: 129 PN 130
Sbjct: 123 KG 124
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 0.002
Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 13/180 (7%)
Query: 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA 89
+ ++G G I + +++ + N+ N L + + +
Sbjct: 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP 120
Query: 90 EKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYS 149
+K L+D ++ +D + P N S
Sbjct: 121 QKTLLMDALKEESEI------IYDF----CMCNPPFFANQLEAKGV---NSRNPRRPPPS 167
Query: 150 LSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFR 209
N + + + L + R + + + + K +G + K +G
Sbjct: 168 SVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVP 227
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 38.0 bits (87), Expect = 0.003
Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 7/116 (6%)
Query: 27 SILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPI 86
+ + ELG G T + E + + + ++ + AI + L +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFE 74
Query: 87 YDAEKKTLLDRVEF----HESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKII 138
+ + V H D +A + + G + ++ PN +A+S+ I
Sbjct: 75 DAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRL-FLVCPNANAVSRQI 129
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 38.0 bits (87), Expect = 0.003
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISW 71
+ V ++G G G +A + + G+D + ++
Sbjct: 17 EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVAS 55
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.0 bits (85), Expect = 0.004
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINL 74
+ ++V + G GNG + V DI+P AI + N
Sbjct: 47 IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC 91
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 0.004
Identities = 5/43 (11%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 28 ILKDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRI 69
+ + E+G G+G ++ I + ++ + ++
Sbjct: 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKK 125
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 903 | |||
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 100.0 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 100.0 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 100.0 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 100.0 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 100.0 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 100.0 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 100.0 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 100.0 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 100.0 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 100.0 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 100.0 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 100.0 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 100.0 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.98 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.97 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.97 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.97 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.97 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.96 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.92 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.91 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.83 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.82 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.8 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.79 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.78 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.63 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.62 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.6 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.59 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.58 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.58 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.58 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.57 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.55 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.53 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.53 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.52 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.5 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.45 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.44 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.44 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.44 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.43 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.42 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.42 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.42 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.4 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.4 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.4 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.4 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.4 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.39 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.39 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.38 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.38 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.38 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.37 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.36 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.35 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.35 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.34 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.34 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.34 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 99.34 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.33 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.33 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.32 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.32 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.32 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.32 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.32 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.32 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.31 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.31 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.3 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.29 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.28 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 99.27 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.26 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.25 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.25 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.24 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.23 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.22 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.21 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.2 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.19 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.19 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.19 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.18 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.16 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.15 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.14 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 99.14 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.14 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.14 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.14 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.13 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.13 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.12 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.12 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.11 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.11 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.09 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.07 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.05 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.04 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.04 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.0 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.99 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.98 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.96 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.93 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.92 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.91 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.91 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.89 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.87 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.86 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.84 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.84 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.82 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.81 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.76 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.76 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.76 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.73 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 98.71 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.69 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 98.68 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.67 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.66 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.65 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.62 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.61 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 98.58 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 98.57 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.57 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 98.57 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.57 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.51 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 98.51 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.51 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 98.45 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.43 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 98.42 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.4 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 98.38 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 98.38 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.37 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.36 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.35 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.34 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.32 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.28 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.27 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 98.27 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 98.26 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 98.26 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 98.26 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.22 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.22 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.09 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.07 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 97.93 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 97.9 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 97.76 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 97.74 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 97.73 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 97.65 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.65 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 97.5 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.49 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 97.48 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 97.47 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 97.42 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 97.4 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 97.31 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.3 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 97.21 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 97.19 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 97.19 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.18 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 96.97 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 96.96 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 96.94 | |
| d1k75a_ | 431 | L-histidinol dehydrogenase HisD {Escherichia coli | 96.92 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 96.86 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 96.82 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.8 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 96.52 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.94 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.83 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.79 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.64 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.57 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 95.56 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.56 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 95.56 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.43 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 95.35 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.33 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 95.06 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 94.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.9 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 94.89 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.79 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 94.57 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.52 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.37 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.12 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 94.01 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 93.98 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 93.92 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 93.8 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.72 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 93.32 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.17 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.77 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.68 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 92.34 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.63 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 91.58 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.53 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 91.41 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 90.96 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 90.78 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 90.74 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 90.47 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.16 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 90.05 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.9 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 89.64 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.49 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 89.46 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.25 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 89.14 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.56 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 88.44 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 88.27 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 87.81 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.77 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 87.74 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.71 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.17 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.86 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.36 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 86.27 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 86.22 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 85.63 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.61 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 85.17 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.9 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 84.73 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 84.29 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 83.87 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 83.65 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 83.65 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 83.39 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 83.07 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 83.02 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 82.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.36 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.91 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 81.77 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 81.39 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 81.29 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.29 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.26 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 81.18 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 81.16 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 80.84 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.24 |
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.1e-42 Score=389.49 Aligned_cols=294 Identities=15% Similarity=0.189 Sum_probs=257.7
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYI 661 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l 661 (903)
+|+|+..+++|++..+.+ ++. ++..|.++|+|++|+|++++|+.+++++.+++.+ |.+..|.+++|+++++++
T Consensus 4 ~~~r~~~~~~s~~~~i~~~a~~--~~~~G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~ 81 (382)
T d1b5pa_ 4 LSRRVQAMKPSATVAVNAKALE--LRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPPAGIPELREALAEKF 81 (382)
T ss_dssp CCHHHHHCCCCHHHHHHHHHHH--HHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHH--HHhCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCCCCCHHHHHHHHhhh
Confidence 688999999999988875 322 2457889999999999999999999999998764 667889999999999999
Q ss_pred HhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHH
Q 043334 662 KSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTI 741 (903)
Q Consensus 662 ~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~ 741 (903)
++.+|...+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++++++|.+|++.+++.
T Consensus 82 ~~~~~~~~~~~-~i~it~G~~~al~~~~~~l~~~gd~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~ 160 (382)
T d1b5pa_ 82 RRENGLSVTPE-ETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRA 160 (382)
T ss_dssp HHTTCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTT
T ss_pred hhhcccccccc-cceecCCHHHHHHHHHHHhCCCCCEEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHh
Confidence 99999998887 99999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 742 LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 742 l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
+++++ ++++++||| ||||.++|.+++++|+++|+++|++||+||+|+++.|++...+ .... . .+++
T Consensus 161 ~~~~~-~~i~~~~P~-NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~------~~~~---~---~~~~ 226 (382)
T d1b5pa_ 161 ITPRT-KALVVNSPN-NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFS------PGRV---A---PEHT 226 (382)
T ss_dssp CCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCC------GGGT---C---TTTE
T ss_pred CCCCC-eEEEECCCC-CCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCC------HHHc---C---CCCE
Confidence 88766 589999997 9999999999999999999999999999999999999887641 1111 1 1589
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|+++||||+|++||||+||++++++ +++.+.++.. ..+++.+.|.++..++. .. .....++...++.|+.|++
T Consensus 227 i~~~s~SK~~~~~GlR~G~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~ 301 (382)
T d1b5pa_ 227 LTVNGAAKAFAMTGWRIGYACGPKE-VIKAMASVSRQSTTSPDTIAQWATLEALT--NQ--EASRAFVEMAREAYRRRRD 301 (382)
T ss_dssp EEEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHH--CH--HHHHHHHHHHHHHHHHHHH
T ss_pred EEEecchhhccCcHhheEEEEECHH-HHHHHHHHHHhcccCcccccccccccccc--cc--cchhHHHHHHHHHHHhhhh
Confidence 9999999999999999999999988 8888876543 67788899988888884 22 2346788889999999998
Q ss_pred HHh
Q 043334 900 RLK 902 (903)
Q Consensus 900 ~l~ 902 (903)
.+.
T Consensus 302 ~~~ 304 (382)
T d1b5pa_ 302 LLL 304 (382)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=6.8e-42 Score=386.32 Aligned_cols=296 Identities=16% Similarity=0.246 Sum_probs=254.9
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+|+..+++|.+..+.+...+ +++.|.++|+|++|+|++++|+.+++++.+++++ |.+..|.+++|+++++++.
T Consensus 3 ~~~~~~~~~~s~~~~i~~~a~~-~~~~g~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~ 81 (388)
T d1j32a_ 3 LAARVESVSPSMTLIIDAKAKA-MKAEGIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQKLQ 81 (388)
T ss_dssp CCHHHHTSCCCSSTTTHHHHHH-HHTTTCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhHhhcCCcCHHHHHHHHHHH-HHHCCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4677888888876555532111 2457889999999999999999999999998764 7778899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|...+++ +|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.++++.+++|.+|++++++.+
T Consensus 82 ~~~g~~~~~~-~i~it~G~~~al~~~~~~~~~~gd~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~ 160 (388)
T d1j32a_ 82 RDNGLCYGAD-NILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAI 160 (388)
T ss_dssp HHHCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHC
T ss_pred HhcccCCCCc-eEEEcCCHHHHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhC
Confidence 9999998888 999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++++++||+ ||||.++|.+++++|+++|+++|++||+||+|+.+.|++..+ .++ ....+.. .+++|
T Consensus 161 ~~~~-~~~~~~~P~-NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~--~s~---~~~~~~~---~~~~i 230 (388)
T d1j32a_ 161 TPKT-KLLVFNTPS-NPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQH--LSI---GAASPEA---YERSV 230 (388)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CCG---GGSCHHH---HHTEE
T ss_pred CCCC-eEEEECCCC-CCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCC--CCH---HHhCccc---cccee
Confidence 8776 589999997 999999999999999999999999999999999999987654 121 1111111 14799
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+|++||+|+||++++++ +++.+.+... ..+++...|.++...+. ++ ++++.++++.|++|++.
T Consensus 231 ~~~S~SK~~~~~GlRvG~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~~~--~~-----~~~~~~~~~~~~~~~~~ 302 (388)
T d1j32a_ 231 VCSGFAKTYAMTGWRVGFLAGPVP-LVKAATKIQGHSTSNVCTFAQYGAIAAYE--NS-----QDCVQEMLAAFAERRRY 302 (388)
T ss_dssp EEEESTTTTTCTTTCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHH--SC-----SHHHHHHHHHHHHHHHH
T ss_pred EecCChhhhhcchhHeEEEEECHH-HHHHHHHhhhhccccccHHHHHHHhhccc--ch-----HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 8888877653 67888999999988884 33 37889999999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
++
T Consensus 303 ~~ 304 (388)
T d1j32a_ 303 ML 304 (388)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.1e-41 Score=381.28 Aligned_cols=294 Identities=18% Similarity=0.246 Sum_probs=255.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+|+..+++|.|+++..... ..+++|+|++|+|++++|+.+++++.+++.+ |.+..|.+++|++++++++
T Consensus 2 ~s~~~~~~~~s~ir~~~~~~~-----~~~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~ 76 (388)
T d1gdea_ 2 LSDRLELVSASEIRKLFDIAA-----GMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLK 76 (388)
T ss_dssp HHHHHHHSCCCHHHHHHHHHH-----HCTTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHH
T ss_pred hhhhhhhCCccHHHHHHHHHh-----CCCCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCCCcCCHHHHHHHHHHHH
Confidence 688999999999999986432 3567999999999999999999999998865 7778899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.++....++++|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.+|++++++|.+|+++|++.+
T Consensus 77 ~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~ 156 (388)
T d1gdea_ 77 KQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYV 156 (388)
T ss_dssp HHHCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHC
T ss_pred hhccccCCChheeeeccCcchHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhC
Confidence 88887655555899999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++++ ++++++||| ||||.++|.+++++|+++|++++++||+||+|+++.|++... .+ +..++... +++|
T Consensus 157 ~~~~-~~i~~~~P~-NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~--~~----~~~~~~~~---~~~i 225 (388)
T d1gdea_ 157 TDKT-RALIINSPC-NPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARH--YS----IASLDGMF---ERTI 225 (388)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCC--CC----GGGSTTCG---GGEE
T ss_pred ccCC-eEEEECCCc-CCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCC--CC----hhhccCCC---CeEE
Confidence 8776 599999998 999999999999999999999999999999999999887653 11 22233322 5899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+||+||+|+||++++++ +++.+.+... ..+++.+.|.++..++. ++ .+.+++...++.|+++++.
T Consensus 226 ~~~S~SK~~~~~GlR~G~ii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~---~~~~~~~~~~~~~~~~~~~ 299 (388)
T d1gdea_ 226 TVNGFSKTFAMTGWRLGFVAAPSW-IIERMVKFQMYNATCPVTFIQYAAAKALK--DE---RSWKAVEEMRKEYDRRRKL 299 (388)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHTTTCSCCHHHHHHHHHHHT--CH---HHHHHHHHHHHHHHHHHHH
T ss_pred EEeCChhhccCccccEEEEEeecc-chhhhhhccccccccccccchhhHHHHHh--hc---cchhHHHHHHHHHHHhhhh
Confidence 999999999999999999999988 8887776543 77788999999999994 22 3456788888888888877
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 300 ~~ 301 (388)
T d1gdea_ 300 VW 301 (388)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=100.00 E-value=3.5e-39 Score=367.38 Aligned_cols=298 Identities=11% Similarity=0.088 Sum_probs=253.1
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH-------ccCCCCCchHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA-------RQNMSESEIDVTPSIQQ 659 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~-------~y~~~~G~~~lr~ala~ 659 (903)
++.|+.++++|.+..+.+... ++++|||+.|+|++++|+.+++++.+++. +|.+..|.+++|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~------~~~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~ 77 (418)
T d2r5ea1 4 LPKRYQGSTKSVWVEYIQLAA------QYKPLNLGQGFPDYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSK 77 (418)
T ss_dssp CCGGGTTCCCCHHHHHHHHHH------HHCCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHH
T ss_pred hhhhhcCCCCCHHHHHHHHhc------CCCCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHH
Confidence 578899999999988875322 24789999999999999999999999875 37778899999999999
Q ss_pred HHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCC--------Cc
Q 043334 660 YIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEV--------GF 731 (903)
Q Consensus 660 ~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~--------~f 731 (903)
++++++|.+.+|.++|++|+|+++++..+++++++|||.|++++|+|+.|...+...|++++.++++.++ .|
T Consensus 78 ~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~ 157 (418)
T d2r5ea1 78 LYSQLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 157 (418)
T ss_dssp HHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGE
T ss_pred HHHHHhCCCCCccceEEEcCCCchhhhhhhhhccccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhh
Confidence 9999999998865599999999999999999999999999999999999999999999999999987542 36
Q ss_pred ccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 732 KMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 732 ~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
.++++.+.+.....+ +++++++|| ||||.++|.+++++|+++|++++++||+||+|..+.|++...+ + +..+
T Consensus 158 ~~~~~~~~~~~~~~~-~~~~i~~p~-NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~--s----~~~~ 229 (418)
T d2r5ea1 158 VLDNNELEALFNEKT-KMIIINTPH-NPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHI--R----ICTL 229 (418)
T ss_dssp ECCHHHHHHHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCC--C----GGGS
T ss_pred hhhHHHHhhhhhccc-cceecCCcC-ccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccc--c----cccc
Confidence 788999988877655 589999998 9999999999999999999999999999999999999876531 1 2222
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAE 889 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~ 889 (903)
.+. ..++++++||||.+++||+|+||++++++ +++.+.+... ..+++++.|.++..++.......+..++|+.+
T Consensus 230 ~~~---~~~~i~~~S~SK~~~~pGlRiG~~~~~~~-~i~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~ 305 (418)
T d2r5ea1 230 PGM---WERTITIGSAGKTFSLTGWKIGWAYGPEA-LLKNLQMVHQNCVYTCATPIQEAIAVGFETELKRLKSPECYFNS 305 (418)
T ss_dssp TTT---GGGEEEEEEHHHHTTCGGGCCEEEESCHH-HHHHHHHHHTTTTCSCCHHHHHHHHHHHHHHHTTTTSTTSHHHH
T ss_pred ccc---cceeeeeecCCccccCCCcccccccccch-hhhhhhhcccccccccccchhhhccccccccccccccchhhHHH
Confidence 332 25899999999999999999999999988 9998887654 67888999998887774211111223578999
Q ss_pred HHHHHHHHHHHHh
Q 043334 890 HIRNLESRSKRLK 902 (903)
Q Consensus 890 ~r~~y~~Rr~~l~ 902 (903)
+++.|+.||+.+.
T Consensus 306 ~~~~~~~~r~~l~ 318 (418)
T d2r5ea1 306 ISGELMAKRDYMA 318 (418)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHH
Confidence 9999999999875
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.6e-39 Score=364.74 Aligned_cols=292 Identities=18% Similarity=0.257 Sum_probs=241.5
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCC---CCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQS---FLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQ 658 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p---~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala 658 (903)
.|+|+.+.. +.++.+.. ++. ++..|.++|+|++|+| ++++|+.+++++.+++.+ |.+..|.+++|++++
T Consensus 4 ~s~r~~~~~-~~ir~i~~~a~~--l~~~G~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~~~G~~~LR~aia 80 (395)
T d1xi9a_ 4 ASKRALSVE-YAIRDVVLPARE--LEKKGIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIV 80 (395)
T ss_dssp CCHHHHTCC-C-------CHHH--HHHTTCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHH
T ss_pred chhccccCc-HHHHHHHHHHHH--HHHCCCCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCHHHHHHHH
Confidence 356777774 56776663 322 2457889999999997 788999999999998864 777889999999999
Q ss_pred HHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH
Q 043334 659 QYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL 738 (903)
Q Consensus 659 ~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L 738 (903)
+++++++|.+.+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.+++..+++|.+|++.+
T Consensus 81 ~~~~~~~g~~~~~~-~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~ 159 (395)
T d1xi9a_ 81 EREKRKNGVDITPD-DVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDI 159 (395)
T ss_dssp HHHHHHHCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHH
T ss_pred Hhhhhccccccccc-ccccccccchhhhhhhhhhcCCCCEEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHH
Confidence 99999999999887 99999999999999999999999999999999999999999999999999998878999999999
Q ss_pred HHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 739 VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 739 ~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
++.+.+++ +++++++|| ||||.+++.+++++|+++|++++++||+||+|.++.|++... + .. .+.. .
T Consensus 160 ~~~~~~~~-~~v~l~~P~-NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~---~---~~-~~~~----~ 226 (395)
T d1xi9a_ 160 RKKITDRT-KAIAVINPN-NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHI---S---PG-SLTK----D 226 (395)
T ss_dssp HHHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCC---C---HH-HHCS----S
T ss_pred HHhhcccc-cEEEecCCC-CCccchhhHHHHHHHHhhhhhcCeeEEecccccccccccccc---c---hh-hcCC----C
Confidence 99988776 599999997 999999999999999999999999999999999999987653 1 12 2222 2
Q ss_pred CceEEEccCchhcccccceeeEEEeCcH-HHH----HHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGALKFGFLVLNHP-QLV----DAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIR 892 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~GlRiG~lv~~~~-~li----~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~ 892 (903)
+++|+++||||+|++||||+||+++++. ..+ +....... ..+++.++|.++..++. ++ ++|++++++
T Consensus 227 ~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~ 299 (395)
T d1xi9a_ 227 VPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVREAIDRLARIRLCPNTPAQFAAIAGLT--GP-----MDYLKEYMK 299 (395)
T ss_dssp SCEEEEEESTTTTCCGGGCCEEEEEECTTCTTHHHHHHHHHHHHHTCCSCSHHHHHHHHHHH--SC-----CHHHHHHHH
T ss_pred CCEEEEeCcchhcccchhhcEeeEecCHHHHHHHHHHHHHHhhcCCCCcCHHHHHHHHHHhc--CC-----HHHHHHHHH
Confidence 5899999999999999999999886531 122 22222222 67788999999999984 33 278999999
Q ss_pred HHHHHHHHHh
Q 043334 893 NLESRSKRLK 902 (903)
Q Consensus 893 ~y~~Rr~~l~ 902 (903)
.|++|++.+.
T Consensus 300 ~~~~~~~~l~ 309 (395)
T d1xi9a_ 300 KLKERRDYIY 309 (395)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-38 Score=360.89 Aligned_cols=298 Identities=9% Similarity=0.128 Sum_probs=252.0
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH------ccCCCCCchHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA------RQNMSESEIDVTPSIQQY 660 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~------~y~~~~G~~~lr~ala~~ 660 (903)
.++|+.++..+++.++.+.. .++++|+|++|+|++++|+.+++++.+++. +|.+..|.+++|++++++
T Consensus 3 ~~~r~~~~~~~~~~~~~~~~------~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~ 76 (418)
T d1w7la_ 3 QARRLDGIDYNPWVEFVKLA------SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASF 76 (418)
T ss_dssp SCGGGTTCCCCTHHHHHHHH------HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHH
T ss_pred cCccccCCCCCHHHHHHHHh------CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHH
Confidence 46788888888887776432 356899999999999999999999998874 377788999999999999
Q ss_pred HHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC----------CCC
Q 043334 661 IKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES----------EVG 730 (903)
Q Consensus 661 l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~----------~~~ 730 (903)
+++.+|.+.+|+++|++|+|+++++..++.+++++||.|++++|+|+.|...+...|++++.++... +++
T Consensus 77 ~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l~~~g~~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~ 156 (418)
T d1w7la_ 77 FGELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 156 (418)
T ss_dssp HHHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGG
T ss_pred HHHHhCCCCCcccceeeccCcHHHHHHHHHhhccCCceeeccccccchhHHHHHHcCCEeeccccccccccccccccccC
Confidence 9999999987644899999999999999999999999999999999999999999999999998753 246
Q ss_pred cccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 731 FKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 731 f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
|.+|..++.....+.+ +++++++|| ||||.++|.+++++|+++|++++++||+||+|.++.|++... .+ +..
T Consensus 157 ~~~d~~~~~~~~~~~~-~~i~~~~p~-NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~--~~----~~~ 228 (418)
T d1w7la_ 157 WQLDPMELAGKFTSRT-KALVLNTPN-NPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQH--IS----IAS 228 (418)
T ss_dssp EECCHHHHHHHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCC--CC----GGG
T ss_pred cccchhhhhccccccc-cceeccCcC-CcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCC--CC----HHH
Confidence 7889888888777665 589999998 999999999999999999999999999999999999988654 22 222
Q ss_pred hccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHH
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVA 888 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~ 888 (903)
+++.. ++++++.|+||.+++||+|+||++++++ +++.+.++.. ..+++++.|.++..+|.......+...+++.
T Consensus 229 ~~~~~---~~~i~~~S~SK~~~~pG~RvG~~v~~~~-~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~ 304 (418)
T d1w7la_ 229 LPGMW---ERTLTIGSAGKTFSATGWKVGWVLGPDH-IMKHLRTVHQNSVFHCPTQSQAAVAESFEREQLLFRQPSSYFV 304 (418)
T ss_dssp STTTG---GGEEEEEEHHHHTTCGGGCCEEEECCHH-HHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHTTTSTTSHHH
T ss_pred ccccc---cccceecccCccccCCCCcccccccchh-hhhhhccccccccccccchhhHHHHHHhhhccccccccccccc
Confidence 33332 5899999999999999999999999987 9988887664 7788999999999888421111122346888
Q ss_pred HHHHHHHHHHHHHh
Q 043334 889 EHIRNLESRSKRLK 902 (903)
Q Consensus 889 ~~r~~y~~Rr~~l~ 902 (903)
.+++.|++||+.+.
T Consensus 305 ~~~~~~~~~r~~l~ 318 (418)
T d1w7la_ 305 QFPQAMQRCRDHMI 318 (418)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhhhh
Confidence 99999999998875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-37 Score=347.87 Aligned_cols=291 Identities=14% Similarity=0.187 Sum_probs=245.9
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~ 662 (903)
+|+|+.+++.|.+..+.+..+. +...|.++|+|++|+|++++|+.+++++.+++.+ |.+..|.+++|++++++++
T Consensus 1 ~~~r~~~~~~~~~~~~~~~a~~-~~~~G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~ 79 (375)
T d1o4sa_ 1 VSRRISEIPISKTMELDAKAKA-LIKKGEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAKRIG 79 (375)
T ss_dssp CCHHHHHSCCCSSHHHHHHHHH-HHHTTCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred CchhhhhCCCCHHHHHHHHHHH-HHHCCCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCCCcCCHHHHHHHHhhhh
Confidence 3678888888888777653221 2346888999999999999999999999988754 7778899999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|.+.+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...+...|...+.++++.+++|.+|.+.++...
T Consensus 80 ~~~~~~~~~~-~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (375)
T d1o4sa_ 80 ERYKKDISPD-QVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLL 158 (375)
T ss_dssp HHHTCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTC
T ss_pred hccccccccc-cccccCcHHHHHHHHHHHHhCCCCEEEEccCccccchhhhhccccccccccccccccccchhHHHHHhh
Confidence 9999998877 999999999999999999999999999999999999999999999999999998888999999999887
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ ++++++||+ ||||.++|.+++++|+++|++|+++||+||+|.++.+++... ..... .+. .+++|
T Consensus 159 ~~~~-~~~~l~nP~-NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~------~~~~~-~~~---~~~~i 226 (375)
T d1o4sa_ 159 VGKT-KAVLINSPN-NPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFT------SILDV-SEG---FDRIV 226 (375)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCC------CHHHH-CSS---STTEE
T ss_pred ccCc-cEEEEeCCC-CCccCCCCHHHHHHHHHhHHHcCCceehHhhhcccccccccc------ccccc-cCC---CCCEE
Confidence 7766 599999997 999999999999999999999999999999999988877663 12222 222 25999
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
+++||||+|++||+|+||+++++. +++.+..... ....+...|..+...+. .+....++.|++|++.
T Consensus 227 ~~~S~SK~~~l~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~r~~~ 295 (375)
T d1o4sa_ 227 YINGFSKSHSMTGWRVGYLISSEK-VATAVSKIQSHTTSCINTVAQYAALKALE----------VDNSYMVQTFKERKNF 295 (375)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHH-HHHHHHHHHHHHTCSCCHHHHHHHHHHTT----------CCCHHHHHHHHHHHHH
T ss_pred EEeechhhccCCcccccccccccc-chhhhhhhhccccccccccchhhhhhhcc----------cchhhhHHHHHHHHHH
Confidence 999999999999999999999998 8888776654 66677788877776663 1223455566666666
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 296 ~~ 297 (375)
T d1o4sa_ 296 VV 297 (375)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.8e-37 Score=349.33 Aligned_cols=291 Identities=16% Similarity=0.194 Sum_probs=244.6
Q ss_pred HhhhhccCCCCHHHHHHH-HhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHH---ccCCCCCchHHHHHHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNS-AELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFA---RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~---~y~~~~G~~~lr~ala~~l~ 662 (903)
+|+|+.++.+|+|+++.. +.. .+..|.++|+|++|+|++++|+.+++++.++.. +|.+..|.+++|++++++++
T Consensus 1 ~~~r~~~~~~~~i~~l~~~a~~--~~~~g~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~~G~~~LR~aia~~~~ 78 (389)
T d2gb3a1 1 FSDRVLLTEESPIRKLVPFAEM--AKKRGVRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHSAGIWELREAFASYYK 78 (389)
T ss_dssp CCHHHHSCCCCTTGGGHHHHHH--HHHTTCEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCTTCCHHHHHHHHHHHH
T ss_pred CChhhhcCCCCHHHHHHHHHHH--HHHcCCCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 478899999999988764 222 135788999999999999999999999877543 37788999999999999999
Q ss_pred hhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh
Q 043334 663 SNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 663 ~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
+.+|+..+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...++..|++++.++++.++ +..+.+.+....
T Consensus 79 ~~~g~~~~~~-~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (389)
T d2gb3a1 79 RRQRVDVKPE-NVLVTNGGSEAILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEE-GFAIPQNLESFI 156 (389)
T ss_dssp HTSCCCCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHHTCEEEEEECCGGG-TSCCCTTGGGGC
T ss_pred HhcCCCcccc-eEEecccccccccccccccccCCCeEEEeCCCCccccccccccCcccccccccccc-ccchhhhhhhhc
Confidence 9999999888 99999999999999999999999999999999999999999999999999987643 344555566666
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
.+++ ++++++||+ ||||.++|.+++++|+++|++++++||+||+|..+.|++...+ ... .. .++++
T Consensus 157 ~~~~-~~~~l~nP~-NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~------~~~---~~---~~~~~ 222 (389)
T d2gb3a1 157 NERT-KGIVLSNPC-NPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFAS------ALS---IE---SDKVV 222 (389)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC------GGG---SC---CTTEE
T ss_pred ccCc-cEEEeCCCC-ccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccc------ccc---cc---ccccc
Confidence 6555 599999998 9999999999999999999999999999999999999886531 111 11 25899
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+++|+||.+++||||+||++++++.+.+.+..... ..+++.+.|.++..++. .. +.+++.+++.|++|++.+
T Consensus 223 v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~-----~~~~~~~~~~~~~~~~~~ 295 (389)
T d2gb3a1 223 VIDSVSKKFSACGARVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLN--LD-----DSFFDFVRETYRERVETV 295 (389)
T ss_dssp EEEESTTTTTCGGGCCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT--CC-----HHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCcccceeeeeccchhHHHHHhhhhhcccccccccccccccccc--cc-----chhcccccccccccchhh
Confidence 99999999999999999999988756665555444 66777888888888883 22 478889999999999887
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 296 ~ 296 (389)
T d2gb3a1 296 L 296 (389)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-36 Score=342.84 Aligned_cols=289 Identities=10% Similarity=0.155 Sum_probs=249.1
Q ss_pred hhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHh
Q 043334 588 STEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 588 s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~ 663 (903)
++++..+..+.+.++.+.. .++++|||+.|+|++++|+.+++++.+++.+ |.+..|.+++|+++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~a------~~~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~ 78 (382)
T d1u08a_ 5 QSKLPQLGTTIFTQMSALA------QQHQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTER 78 (382)
T ss_dssp CCSCCCCCCCHHHHHHHHH------HHTTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHH
T ss_pred hhhCCCCCCcHHHHHHHHh------ccCCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 3455666677777776532 2358899999999999999999999988765 77889999999999999999
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+|.+.+++++|++|+|+++++.+++++++++||.|++++|+|+.+...+...|+.++.++++. +++.+|.+++++.+.
T Consensus 79 ~~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~-~~~~~d~~~l~~~~~ 157 (382)
T d1u08a_ 79 LYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQP-PHFRVDWQEFAALLS 157 (382)
T ss_dssp HHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECCT-TTCCCCHHHHHHHCC
T ss_pred HhCCCCCCCceEEeccchHHHHHHHHhhcccccceEEEecccccchhhhhhhccccceeccccc-ccccCCHHHHhhhhc
Confidence 9999988876799999999999999999999999999999999999999999999999988875 678899999999888
Q ss_pred cCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 744 TVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 744 ~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
+++ +++++++|| ||||.+++.+++++|+++|++++++++.|+.|..+.|.+.... . ....+.. .+++|+
T Consensus 158 ~~~-~~i~l~~P~-NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~--~----~~~~~~~---~~~~i~ 226 (382)
T d1u08a_ 158 ERT-RLVILNTPH-NPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHA--S----VLAHPQL---RERAVA 226 (382)
T ss_dssp TTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCC--C----GGGSHHH---HTTEEE
T ss_pred cCc-cEEEECCCC-cccccccccccchhhhhhhccccceeeeecchhhccccccccc--c----ccccccc---cCcEEE
Confidence 776 599999998 9999999999999999999999999999999998888765431 1 1111111 158999
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+.|+||.+++||+|+||++++++ +++.+.+... ..+++.+.|.++..++. ++ ++++..+++.|++|++.+
T Consensus 227 ~~s~SK~~~~pG~RiG~~v~~~~-~~~~~~~~~~~~~~~~~~~~q~a~~~~l~--~~-----~~~~~~~~~~~~~~~~~l 298 (382)
T d1u08a_ 227 VSSFGKTYHMTGWKVGYCVAPAP-ISAEIRKVHQYLTFSVNTPAQLALADMLR--AE-----PEHYLALPDFYRQKRDIL 298 (382)
T ss_dssp EEEHHHHTTCGGGCCEEEECCHH-HHHHHHHHHHHHTSSCCHHHHHHHHHHHH--HC-----THHHHTHHHHHHHHHHHH
T ss_pred EeeccccccCCcccchhhhccch-hHHHHHhhhcccccccccccccccccccc--cc-----hHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999988 9998887764 78899999999999994 33 278889999999999987
Q ss_pred h
Q 043334 902 K 902 (903)
Q Consensus 902 ~ 902 (903)
.
T Consensus 299 ~ 299 (382)
T d1u08a_ 299 V 299 (382)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=100.00 E-value=1.2e-36 Score=343.59 Aligned_cols=276 Identities=10% Similarity=0.120 Sum_probs=226.4
Q ss_pred cCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 611 ETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
+..|.++|+|++|+|++++|+.+++++.+++++ ++++.|.++||+++++++++++|++.+++ +|++|+|+++++..+
T Consensus 27 ~~~g~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~-~I~vt~G~~~al~~~ 105 (394)
T d1c7na_ 27 PEVGNEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTD-WIINTAGVVPAVFNA 105 (394)
T ss_dssp TTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEESSHHHHHHHH
T ss_pred HhcCCCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCc-ceEeeccchhhhhhh
Confidence 357789999999999999999999999998875 44556889999999999999999998887 999999999999999
Q ss_pred HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCC-CCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 689 VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESE-VGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 689 l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~-~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
+.++++|||.|+++.|+|.++...+...|++.+.++.... .+|.+|.+.++........+++++++|| ||||.++|.+
T Consensus 106 ~~~~~~pgd~vi~~~p~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~-NPTG~v~s~~ 184 (394)
T d1c7na_ 106 VREFTKPGDGVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPH-NPVGRVWKKD 184 (394)
T ss_dssp HHHHCCTTCEEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSB-TTTTBCCCHH
T ss_pred hccccccccccccccCcccchhhHHhhhhhcccccccccccccccchhhhhhhhhccccceEEEecccc-cccceeccHH
Confidence 9999999999999999999999999999999999988643 4578899999888765544699999998 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
++++|+++|++++++||+||+|.++.|++..++.. ..... .. .+++++++|+||+|+++|||+||+++++..
T Consensus 185 ~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~--~~~~~---~~---~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~ 256 (394)
T d1c7na_ 185 ELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVF--QSIDE---QL---ADKTITFTAPSKTFNIAGMGMSNIIIKNPD 256 (394)
T ss_dssp HHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCG--GGSCH---HH---HTTEEEEECSHHHHTCGGGCCEEEECCCHH
T ss_pred HhhhhhccccccceeEeccccccccccCCccccch--hhhhc---cc---ccceeecccccccccccccccccccccChh
Confidence 99999999999999999999999999988764211 11111 11 148999999999999999999999999886
Q ss_pred HHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 848 LVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 848 li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+.+.+.+... ..+++...|.++..... ... +++.+++++.++++++.+.
T Consensus 257 i~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~ 307 (394)
T d1c7na_ 257 IRERFTKSRDATSGMPFTTLGYKACEICY-KEC-----GKWLDGCIKVIDKNQRIVK 307 (394)
T ss_dssp HHHHHHHHHHHTTCCCCCHHHHHHHHHHH-HHC-----HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccccccccchhhhhhh-cch-----hhhhcccccccchhhhhhh
Confidence 7777776553 33333333333333331 222 4677888888888887764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.2e-36 Score=343.28 Aligned_cols=292 Identities=12% Similarity=0.196 Sum_probs=232.9
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC----CcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhh
Q 043334 594 FSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP----IPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 594 l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~----~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~ 664 (903)
+..++++.+..... ....+.++|+|++|+|+++ +++.+.+++.+++. .|.+..|.++||++++++++++
T Consensus 11 ~~~~pir~~~~~~~--~~~~~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~ 88 (412)
T d1bw0a_ 11 LVFNPIRTVSDNAK--PSPSPKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNS 88 (412)
T ss_dssp TCCCHHHHHHHTCC--CCCSCSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHhcC--CCCCCCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHh
Confidence 44567777664322 1245567999999999865 34667777777654 3777889999999999999998
Q ss_pred cCC------CCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH
Q 043334 665 FGF------PIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL 738 (903)
Q Consensus 665 ~G~------~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L 738 (903)
++. ..+++ +|++|+|+++++..++.++++|||+|++++|+|+.|...++..|++++.+|++++++|.++++.+
T Consensus 89 ~~~~~~~~~~~~~~-~I~it~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l 167 (412)
T d1bw0a_ 89 FVHKEELKSTIVKD-NVVLCSGGSHGILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEI 167 (412)
T ss_dssp HCCSTTTGGGCCGG-GEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHH
T ss_pred cCcccccCCCCCCC-eEEEecccccchhhhhhhhhccccceeeeeccchhhhhhhhccCccccccccccccccchhhHHH
Confidence 753 35666 99999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 739 VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 739 ~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
++...+.+ ++++++||+ ||||.+++.+++++|+++|++++++||+||+|.++.|++...... ......... .
T Consensus 168 ~~~~~~~~-~~~~l~np~-NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~--~~~~~~~~~----~ 239 (412)
T d1bw0a_ 168 RRLKDDKT-KLLIVTNPS-NPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNAT--FTSVADFET----T 239 (412)
T ss_dssp HHHCCTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCC--CCCTTSSCC----S
T ss_pred Hhhhhccc-ccccccccc-ccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccc--ccccccccc----c
Confidence 99887766 589999998 999999999999999999999999999999999999987653111 111111222 2
Q ss_pred CceEEEccCchhcccccceeeEEEeCcH-----HHHHHHHhCCC-CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGALKFGFLVLNHP-----QLVDAFSSFPG-LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIR 892 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~GlRiG~lv~~~~-----~li~~l~~~~~-~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~ 892 (903)
.++++++||||.|++||||+||+++++. .++....+... ..+++...|.++...+. .+. ++++.++++
T Consensus 240 ~~~~~~~s~SK~~~~~G~RvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~ 313 (412)
T d1bw0a_ 240 VPRVILGGTAKNLVVPGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALL-NTP-----QEHLDQIVA 313 (412)
T ss_dssp CCEEEEEESTTTTSCGGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH-SSC-----HHHHHHHHH
T ss_pred cccccccccCccCccCCCCcccccccchhhcchhhhhhhccccccccCCchhhhhhcccccc-ccc-----ccccccccc
Confidence 4789999999999999999999998753 23444444333 45566777766666663 222 478999999
Q ss_pred HHHHHHHHHh
Q 043334 893 NLESRSKRLK 902 (903)
Q Consensus 893 ~y~~Rr~~l~ 902 (903)
.|++||+.+.
T Consensus 314 ~~~~~r~~~~ 323 (412)
T d1bw0a_ 314 KIEESAMYLY 323 (412)
T ss_dssp HHHHHHHHHH
T ss_pred hhHHHHHHHH
Confidence 9999999875
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=100.00 E-value=1.5e-34 Score=329.96 Aligned_cols=281 Identities=17% Similarity=0.253 Sum_probs=225.4
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHH---------------HHHHccCCCCCchHHHHHHHHHHHhhcCC--CCCCCCcE
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIF---------------ESFARQNMSESEIDVTPSIQQYIKSNFGF--PIDINAEF 675 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~---------------~al~~y~~~~G~~~lr~ala~~l~~~~G~--~~~pe~~I 675 (903)
++.++|+|++++|.+. .+.+.+.+. ..+..|.+..|.++||+++++|+++++|. +.+|+ +|
T Consensus 34 np~G~i~l~~aen~l~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e-~I 111 (428)
T d1iaya_ 34 NPNGVIQMGLAENQLC-LDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RV 111 (428)
T ss_dssp STTSBEECSSCCCCSS-HHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SC
T ss_pred CCCceEEeecccCccc-hHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh-hE
Confidence 4467999999998763 233332222 12446888899999999999999999885 45677 99
Q ss_pred EecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH-cCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcE
Q 043334 676 IYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF-LKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPW 749 (903)
Q Consensus 676 ~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~-~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~ 749 (903)
++|+|+++++..++.++++|||.|++++|+|+.|...+.. .|+++++++++.+++|.+|++.++.++.. ...++
T Consensus 112 vit~G~~~al~~~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 191 (428)
T d1iaya_ 112 VMAGGATGANETIIFCLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKG 191 (428)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred EEcCCHHHHHHHHHHHhCCCCCEEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccchhhhhhccCCCceE
Confidence 9999999999999999999999999999999999888764 58999999999888999999988765421 22358
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
++++||+ ||||.+++.+++++|+++|+++|++||+||+|+++.|++..+ .++.+............+++++++||||
T Consensus 192 ~~l~nP~-NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~vi~~~s~SK 268 (428)
T d1iaya_ 192 LILTNPS-NPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQF--VSIAEILDEQEMTYCNKDLVHIVYSLSK 268 (428)
T ss_dssp EEEESSC-TTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCC--CCHHHHHTSGGGTTSCTTSEEEEEESTT
T ss_pred EEEccCC-CcccccccccccchhheeeccCcEEEEecccccccccCcccc--cccccccchhhccccccceEEEEecCCC
Confidence 9999998 999999999999999999999999999999999999987654 2322222111100001258999999999
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.|+++|+|+||++++++.+++.+.........+.+.|.++.+.+.. . +.+++++++.++.|++|++.+.
T Consensus 269 ~~~~~GlRiG~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~l~~-~---~~~~~~~~~~~~~l~~r~~~~~ 337 (428)
T d1iaya_ 269 DMGLPGFRVGIIYSFNDDVVNCARKMSSFGLVSTQTQYFLAAMLSD-E---KFVDNFLRESAMRLGKRHKHFT 337 (428)
T ss_dssp TSSCGGGCEEEEEESCHHHHHHHHHHHTTSCCCHHHHHHHHHHTTC-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccccccccccchhhhhhhhhcccccccccccchhhhhhh-h---ccccccccccccccchhHHHHH
Confidence 9999999999999988768888877777777888899888887741 1 3456789999999999998875
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=100.00 E-value=1.1e-34 Score=327.76 Aligned_cols=294 Identities=13% Similarity=0.127 Sum_probs=235.6
Q ss_pred hhHHhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHH-------ccCCCCCchHHH
Q 043334 584 EKAKSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFA-------RQNMSESEIDVT 654 (903)
Q Consensus 584 ~~~~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~-------~y~~~~G~~~lr 654 (903)
..++|+++.++..|.|+++.... ..+++|+|+.|.|+.. +.+.+.+++.+.+. +|++..|.+++|
T Consensus 4 ~~~~~~~~~~~~~s~ire~~~~~------~~~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR 77 (403)
T d1wsta1 4 DSFFSEKAMLMKASEVRELLKLV------ETSDVISLAGGLPAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLR 77 (403)
T ss_dssp GGGCCHHHHHCCCHHHHHHHHHH------TSSSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHh------CCCCcEECCCCCCCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHH
Confidence 44688899999999998886532 4567999999998754 44556666666543 388899999999
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccC
Q 043334 655 PSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734 (903)
Q Consensus 655 ~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld 734 (903)
+++++++++.+|.+.+++ +|++|+|+++++..++.+++++||.|++++|+|+.|...+...|++++.++.+++..+...
T Consensus 78 ~aia~~l~~~~g~~~~~~-~I~it~G~~~al~~~~~~l~~~gd~v~~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~ 156 (403)
T d1wsta1 78 LALARWMEKRYDIPMSKV-EIMTVAGSQQALDLIGRVFLNPGDPIVVEAPTYLAAIQAFKYYDPEFISIPLDDKGMRVDL 156 (403)
T ss_dssp HHHHHHHHHHHCCCCTTC-EEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTCCEEEEEEEETTEECHHH
T ss_pred HHHHHHHHHHhCCCCChH-HeeecccchHHHHHHHHHHhhcCCccccCCCcchhhhHHHhhccccceeEeecccCCcccc
Confidence 999999999999998877 9999999999999999999999999999999999999999999999999999764322222
Q ss_pred HHHHH-HHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhh
Q 043334 735 EKTLV-TILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKL 811 (903)
Q Consensus 735 ~~~L~-~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l 811 (903)
..... ...... ...++++++|+ ||||.++|.+++++|+++|++||++||+||+|.++.|++.+.+ .+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~p~-NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~------~~~~~ 229 (403)
T d1wsta1 157 LEEKLEELRKQGKRVKIVYTVSTFQ-NPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTP------PIKHF 229 (403)
T ss_dssp HHHHHHHHHHTTCCCCEEEECCSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCC------CGGGG
T ss_pred ccccchhhhhccccccccccccccC-CCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCC------ccccc
Confidence 22222 222222 22356667776 9999999999999999999999999999999999999887642 12223
Q ss_pred ccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHH
Q 043334 812 YSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAE 889 (903)
Q Consensus 812 ~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~ 889 (903)
+.. +++++++||||.++ ||+|+||++++++ +++.+..... ..+++...|.+...++. .. ..+.++.+
T Consensus 230 ~~~----~~~i~~~S~SK~~~-~G~RiG~~i~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~ 298 (403)
T d1wsta1 230 DDY----GRVIYLGTFSKILA-PGFRIGWVAAHPH-LIRKMEIAKQSIDLCTNTFGQAIAWKYVE--NG---YLDEHIPK 298 (403)
T ss_dssp CSS----SCEEEEEESTTTTC-GGGCCEEEEECHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHH--TT---HHHHHHHH
T ss_pred CCC----CcEEEEccccceec-CcccccccccchH-HHHHHHHHHhhhccccccchhhhHHhhhh--cc---ccchhHHH
Confidence 332 58999999999995 9999999999987 8888877654 57788888888888774 22 34678888
Q ss_pred HHHHHHHHHHHHh
Q 043334 890 HIRNLESRSKRLK 902 (903)
Q Consensus 890 ~r~~y~~Rr~~l~ 902 (903)
+++.++++++.++
T Consensus 299 ~~~~~~~~~~~~~ 311 (403)
T d1wsta1 299 IIEFYKPRRDAML 311 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8988888887764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-34 Score=320.00 Aligned_cols=265 Identities=15% Similarity=0.183 Sum_probs=218.8
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
+|+|++|+|++++|+.+.+++.+++.. |.+..| +++|+++++++++++|.+.+++ +|++|+|+++++..++.++
T Consensus 1 ~~~~~~~~~df~~p~~i~eal~~~~~~~~~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~-~i~it~G~~~~l~~~~~~l 78 (361)
T d1d2fa_ 1 LLPFTISDMDFATAPCIIEALNQRLMHGVFGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQ-TVVYGPSVIYMVSELIRQW 78 (361)
T ss_dssp CEECCSSSCSSCCCHHHHHHHHHHHTTCCCCCCCSCC-HHHHHHHHHHHHHHSCCCCCGG-GEEEESCHHHHHHHHHHHS
T ss_pred CcCcCCCCCCCCCCHHHHHHHHHHHhCCCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCcc-eEEEeCCHHHHHHHHhhhc
Confidence 589999999999999999999998764 555556 6899999999999999999888 9999999999999999999
Q ss_pred ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 693 ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 693 ~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
++|||+|++++|+|+.|..+++..|.++++++.+. +++|.+|++.+++.+.+.+.++++++||+ ||||.++|.+++++
T Consensus 79 ~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~-NPTG~~~s~~~~~~ 157 (361)
T d1d2fa_ 79 SETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQ-NPTGKVWTCDELEI 157 (361)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSC-TTTCCCCCTTHHHH
T ss_pred cccccccccccccccchhHHHHhhcceEEeecccccccccccccccchhhcccCCceeEEecccc-cccccccchhhhhh
Confidence 99999999999999999999999999999998864 35688999999999876555699999997 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|+++|+++|++||+||+|.++.|++.... .+..... ++++++.|+||+++++|+|+||+++++....+.
T Consensus 158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~------~~~~~~~-----~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~ 226 (361)
T d1d2fa_ 158 MADLCERHGVRVISDEIHMDMVWGEQPHI------PWSNVAR-----GDWALLTSGSKSFNIPALTGAYGIIENSSSRDA 226 (361)
T ss_dssp HHHHHHHTTCEEEEECTTTTCBCSSSCCC------CGGGTCC-----SSEEEEECSHHHHTCGGGCCEEEEECSHHHHHH
T ss_pred hhhhhhhhheeeeeccccccccccccccc------ccccccc-----cccccccccccccccccccceeeecchhHHHHH
Confidence 99999999999999999999999876531 1222221 589999999999999999999998876534333
Q ss_pred H-HhCCC---CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 852 F-SSFPG---LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 852 l-~~~~~---~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+ ..+.. .+.++...|.++...+. .. .++.+++++.+++|++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~-----~~~~~~~~~~~~~r~~~~~ 274 (361)
T d1d2fa_ 227 YLSALKGRDGLSSPSVLALTAHIAAYQ--QG-----APWLDALRIYLKDNLTYIA 274 (361)
T ss_dssp HHHHHHTTSCCCSCCHHHHHHHHHHHH--HC-----HHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccccccccchhhhHHHHHHHhh--cc-----chhhhcccccchhhHHHHH
Confidence 3 22222 44455566665555552 22 3677788888888887653
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=100.00 E-value=4.3e-34 Score=326.58 Aligned_cols=280 Identities=18% Similarity=0.272 Sum_probs=223.1
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHH----------------HHHHccCCCCCchHHHHHHHHHHHhhcC--CCCCCCCcE
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIF----------------ESFARQNMSESEIDVTPSIQQYIKSNFG--FPIDINAEF 675 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~----------------~al~~y~~~~G~~~lr~ala~~l~~~~G--~~~~pe~~I 675 (903)
+.++|+|++++|.+. .+.+.+.+. +.+..|.+..|.++||+++++++++++| ++.+|+ +|
T Consensus 35 p~G~i~l~~~en~l~-~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe-~I 112 (431)
T d1m7ya_ 35 TNGIIQMGLAENQLC-FDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HL 112 (431)
T ss_dssp TTSBEECSSCCCCSC-HHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GE
T ss_pred CCcEEEeeccccccc-HHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc-eE
Confidence 446999999999874 233333332 2334588889999999999999999987 456777 99
Q ss_pred EecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH-cCCEEEEecCCCCCCcccCHHHHHHHhhc-----CCCcE
Q 043334 676 IYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF-LKANIVNIPTESEVGFKMTEKTLVTILET-----VKKPW 749 (903)
Q Consensus 676 ~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~-~G~~vv~v~~~~~~~f~ld~~~L~~~l~~-----~~~~~ 749 (903)
++|+|+++++..++.++++|||.|++++|+|+.+...++. .|+++++++++.+++|.+|++.+++.+.+ ...++
T Consensus 113 ~it~G~~~al~~~~~~l~~pGd~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 192 (431)
T d1m7ya_ 113 VLTAGATSANETFIFCLADPGEAVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKG 192 (431)
T ss_dssp EEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhhhhhhhhhccCcceE
Confidence 9999999999999999999999999999999999888874 68999999999888999999999877653 12358
Q ss_pred EEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc--cCCCCCCceEEEccC
Q 043334 750 VYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY--SSTNSSFNVSLLGGL 827 (903)
Q Consensus 750 vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~--~~~~~~~~vI~l~S~ 827 (903)
++++||+ ||||.+++.+++++|+++|+++|++||+||+|+.+.|++... .++.+...... ......+++|+++||
T Consensus 193 i~~~nP~-NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~vi~~~s~ 269 (431)
T d1m7ya_ 193 VLVTNPS-NPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSF--ISVMEVLKDRNCDENSEVWQRVHVVYSL 269 (431)
T ss_dssp EEEESSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCC--CCHHHHTTTTTCSSSSSGGGGEEEEEES
T ss_pred EEecCcc-ccccccccccccccccccccccCcceeecccccccccCCCCC--CCHHHHhhhcccccccccCceEEEEecC
Confidence 9999998 999999999999999999999999999999999999987653 23222111100 000002489999999
Q ss_pred chhcccccceeeEEEeCcHHHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 828 SLKMLTGALKFGFLVLNHPQLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 828 SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
||.||++|+|+||++++++.+.+.+.......++++..|.++.+.+.. . ...++++.+.++.|++|++.++
T Consensus 270 SK~~~~~G~RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~l~~-~---~~~~~~~~~~~~~~~~~~~~l~ 340 (431)
T d1m7ya_ 270 SKDLGLPGFRVGAIYSNDDMVVAAATKMSSFGLVSSQTQHLLSAMLSD-K---KLTKNYIAENHKRLKQRQKKLV 340 (431)
T ss_dssp SSSSCCGGGCEEEEEESCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHC-H---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCccceeccchhhhHHHHHHHhccccccccccchhhhhhcc-c---hhhhhhhhhhhhhhhhhhhhhh
Confidence 999999999999999999844455555555667778888888877741 1 2346789999999999999875
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-34 Score=326.59 Aligned_cols=288 Identities=16% Similarity=0.157 Sum_probs=233.4
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCC--CcHHHHHHHHHHHH-------ccCCCCCchHHHHHH
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLP--IPSLVKAAIFESFA-------RQNMSESEIDVTPSI 657 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~--~p~~v~~al~~al~-------~y~~~~G~~~lr~al 657 (903)
+|+...++.+|.++++... ..++++|+|+.|.|+.. |++.+.+++.++++ +|.+..|.++||+++
T Consensus 16 ~s~~~~~~~~s~ir~~~~~------~~~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~ai 89 (420)
T d1vp4a_ 16 ISKIGQNMKSSIIREILKF------AADKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQI 89 (420)
T ss_dssp CCHHHHTCCCCCHHHHTTT------TTSTTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHH
T ss_pred HhHHHHhCCCcHHHHHHHH------hCCCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHH
Confidence 5667778888888887542 36788999999998754 34555666655543 378889999999999
Q ss_pred HHHHHhhcCCC-CCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHH
Q 043334 658 QQYIKSNFGFP-IDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEK 736 (903)
Q Consensus 658 a~~l~~~~G~~-~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~ 736 (903)
++++++.+|++ .+++ +|++|+|+++++..++.++++|||.|++++|+|+.|...++..|++++.+|++++ + +|++
T Consensus 90 a~~~~~~~g~~~~~~~-~I~it~G~~~al~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~-~--~~~~ 165 (420)
T d1vp4a_ 90 LKLLERMYGITGLDED-NLIFTVGSQQALDLIGKLFLDDESYCVLDDPAYLGAINAFRQYLANFVVVPLEDD-G--MDLN 165 (420)
T ss_dssp HHHHHHHHCCCSCCGG-GEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCHHHHHHHHTTTCEEEEEEEETT-E--ECHH
T ss_pred HHHHHHHhCCCCCCHH-HeEeccchhhhHHHHHHhhhccccccccccccccchhHHHHHHhhhccccccccc-c--cccc
Confidence 99999999987 5666 9999999999999999999999999999999999999999999999999998753 3 6777
Q ss_pred HHHHHhhc--------CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 737 TLVTILET--------VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 737 ~L~~~l~~--------~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
.++..+.+ +.+.++++++|+ ||||.+++.+++++|+++|++++++||+||+|.++.|++...+ + .
T Consensus 166 ~l~~~~~~~~~~~~~~~~~~~~~~~~p~-NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~-----~-~ 238 (420)
T d1vp4a_ 166 VLERKLSEFDKNGKIKQVKFIYVVSNFH-NPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVD-----P-I 238 (420)
T ss_dssp HHHHHHHHHHHTTCGGGEEEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCC-----C-H
T ss_pred hhhhhhhhhHHHhhccccceeeEecCCC-CccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccc-----c-c
Confidence 66554321 122356677887 9999999999999999999999999999999999999876531 1 1
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHH
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNA 886 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~ 886 (903)
..... + +++++++|+||.+ ++|||+||++++++ +++++.+... ..+++...|.++..++. .+ .+.++
T Consensus 239 ~~~~~-~---~~~i~~~s~sk~~-~~G~RiG~~~~~~~-~i~~l~~~~~~~~~~~~~~~q~~~a~~l~--~~---~~~~~ 307 (420)
T d1vp4a_ 239 FKIGG-P---ERVVLLNTFSKVL-APGLRIGMVAGSKE-FIRKIVQAKQSADLCSPAITHRLAARYLE--RY---DLLEQ 307 (420)
T ss_dssp HHHHC-T---TTEEEEEESTTTT-CGGGCEEEEECCHH-HHHHHHHHHHHHHSSCCHHHHHHHHHHHH--HS---CHHHH
T ss_pred ccccc-c---cceeEEecccccc-ccccccccccccch-hhhhhhhhhhhccccCchhhhhhhhhhcc--cc---ccccc
Confidence 11222 1 5899999999987 59999999999987 9999987765 67788999999998884 22 24577
Q ss_pred HHHHHHHHHHHHHHHh
Q 043334 887 VAEHIRNLESRSKRLK 902 (903)
Q Consensus 887 l~~~r~~y~~Rr~~l~ 902 (903)
+++.++.|++|++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (420)
T d1vp4a_ 308 LKPTIELYRRKRTVML 323 (420)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhhcccch
Confidence 8888888888888764
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=2.6e-34 Score=325.16 Aligned_cols=293 Identities=12% Similarity=0.058 Sum_probs=229.3
Q ss_pred CCCHHHHHHH-HhhhhccCCCCCeEEccCCC---CCC--CCcHHHHHHHHHHHHc-----cCCCCCchHHHHHHHHHHHh
Q 043334 595 SRSAISVLNS-AELSITETPNSGLIHMDVDQ---SFL--PIPSLVKAAIFESFAR-----QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 595 ~~s~i~~l~~-a~~a~~~~~~~~~IdLs~g~---p~~--~~p~~v~~al~~al~~-----y~~~~G~~~lr~ala~~l~~ 663 (903)
|++++..+.. .++ ...++.|||++|. ++. +.++.++++....+.. |.+..|.++||+++++++.+
T Consensus 11 p~d~i~~~~~~~~~----d~~~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~ 86 (401)
T d7aata_ 11 PPDPILGVTEAFKR----DTNSKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKMDKEYLPIAGLADFTRASAELALG 86 (401)
T ss_dssp CCCHHHHHHHHHHH----CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHhC----CCCCCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhc
Confidence 4456666654 333 4566789999994 332 3457888887776543 67788999999999999999
Q ss_pred hcCCCCCCCCcEEecCchH-----HHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHH
Q 043334 664 NFGFPIDINAEFIYADCSQ-----SLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTL 738 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~-----~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L 738 (903)
.++....++ +|+++.|+. .++..++.++++|||+|++++|+|+.|...++..|++++.+|+.++++|.++.+.+
T Consensus 87 ~~~~~~~~~-~i~~~~~~~~~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 165 (401)
T d7aata_ 87 ENSEAFKSG-RYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGA 165 (401)
T ss_dssp TTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHH
T ss_pred cCCcccCcC-ceEEeccchHHHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHH
Confidence 888776655 676654433 57788888999999999999999999999999999999999998888899999998
Q ss_pred HHHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCC
Q 043334 739 VTILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTN 816 (903)
Q Consensus 739 ~~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~ 816 (903)
.+.+... ..+++++++|+ ||||.++|.+++++|+++|++|+++||+||+|.++.|++...+.. ........
T Consensus 166 ~~~~~~~~~~~~~iii~~p~-NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~----~~~~~~~~-- 238 (401)
T d7aata_ 166 MEDISKIPEKSIILLHACAH-NPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAW----ALRHFIEQ-- 238 (401)
T ss_dssp HHHHTTSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTH----HHHHHHHT--
T ss_pred HHHHhcCCCceEEEEecCCC-CCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchh----hhhhhhhh--
Confidence 8877532 23588899997 999999999999999999999999999999999999987542111 11111222
Q ss_pred CCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC---------CCCCCcHHHHHHHHHHHhcccccchhHHHHH
Q 043334 817 SSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP---------GLSKPHSTVRYAIKKLLGLRERKARDLMNAV 887 (903)
Q Consensus 817 ~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~---------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l 887 (903)
.++++++.|+||.++++|||+||++++.. +++++.++. ...+++...|.++..++.. ......+.+++
T Consensus 239 -~~~~~~~~s~sk~~~~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~ 315 (401)
T d7aata_ 239 -GIDVVLSQSYAKNMGLYGERAGAFTVICR-DAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNT-PELRKEWLVEV 315 (401)
T ss_dssp -TCCCEEEEECTTTSCCGGGCEEEEEEECS-SHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHC-HHHHHHHHHHH
T ss_pred -hcccceeEeccccceeeccccceeecchH-HHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCC-HHHHHHHHHHH
Confidence 24789999999999999999999999886 665554432 1567889999999999852 22233456788
Q ss_pred HHHHHHHHHHHHHHh
Q 043334 888 AEHIRNLESRSKRLK 902 (903)
Q Consensus 888 ~~~r~~y~~Rr~~l~ 902 (903)
+.+++.|++||+.++
T Consensus 316 ~~~~~~~~~~r~~l~ 330 (401)
T d7aata_ 316 KGMADRIISMRTQLV 330 (401)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999999875
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1e-33 Score=315.97 Aligned_cols=283 Identities=11% Similarity=0.145 Sum_probs=237.0
Q ss_pred HhhhhccCCCCHHHHHHHHhhhhccCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc---cCCCCCchHHHHHHHHHHHh
Q 043334 587 KSTEMIGFSRSAISVLNSAELSITETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR---QNMSESEIDVTPSIQQYIKS 663 (903)
Q Consensus 587 ~s~~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~---y~~~~G~~~lr~ala~~l~~ 663 (903)
+|.|+..++.+.+..+..... ..++|||++|+|++++|+.+++++.+++.+ |.+..|.+++|+++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~la~------~~~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~~G~~elr~aiA~~~-- 74 (368)
T d1v2da_ 3 LHPRTEAAKESIFPRMSGLAQ------RLGAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEF-- 74 (368)
T ss_dssp CCGGGGGC---CHHHHHHHHH------HHTCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCTTCCHHHHHHHHHHH--
T ss_pred CChhhhhcCCCHHHHHHHHhc------cCCCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCCcCCHHHHHHHHhhc--
Confidence 467788888888887764221 236899999999999999999999998764 777889999999998875
Q ss_pred hcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCCcccCHHHHHHHh
Q 043334 664 NFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVGFKMTEKTLVTIL 742 (903)
Q Consensus 664 ~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~f~ld~~~L~~~l 742 (903)
+++. + +|++|+|+++++..++.+++++||.|++++|+|+.+...++..|.+++.++++. .+++.+|++.+++.+
T Consensus 75 --~~~~--~-~Iiit~G~~~al~~~~~~l~~~~d~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~ 149 (368)
T d1v2da_ 75 --AVEP--E-SVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL 149 (368)
T ss_dssp --TSCG--G-GEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTC
T ss_pred --ccCC--c-ceeeccchHHHHHHHhhccccccccccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhh
Confidence 5544 4 999999999999999999999999999999999999999999999999998864 356889999999999
Q ss_pred hcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceE
Q 043334 743 ETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVS 822 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI 822 (903)
++.+ +++++++|| ||||.+++.+++++|+++|+++|++||+||+|..+.+..... .... .. .++++
T Consensus 150 ~~~~-~~i~~~~p~-NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~------~~~~--~~----~~~~~ 215 (368)
T d1v2da_ 150 TPRT-RALLLNTPM-NPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPR------RLRE--FA----PERTF 215 (368)
T ss_dssp CTTE-EEEEEESSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCC------CHHH--HC----TTTEE
T ss_pred ccCc-eEEEEcCCC-CcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhccccccc------cccc--cc----ccccc
Confidence 8766 589999998 999999999999999999999999999999998776665542 1111 11 14789
Q ss_pred EEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 823 LLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 823 ~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
++.|+||.++++|+|+||++++++ +++.+.+... ..+++.+.|.++..++. .+ ...++++.+++.|++|++.
T Consensus 216 ~~~~~sk~~~~~G~R~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--~~---~~~~~~~~~~~~~~~~~~~ 289 (368)
T d1v2da_ 216 TVGSAGKRLEATGYRVGWIVGPKE-FMPRLAGMRQWTSFSAPTPLQAGVAEALK--LA---RREGFYEALREGYRRRRDL 289 (368)
T ss_dssp EEEEHHHHTTCGGGCCEEEECCTT-THHHHHHHHHHHTSSCCHHHHHHHHHHHH--HH---HHTTHHHHHHHHHHHHHHH
T ss_pred eeeccccccccccccccccccccc-ccchhhhhhhccccccccccccccccccc--cc---cchhhHHHHHHHHHHhhhh
Confidence 999999999999999999999998 8888887665 78889999999999984 22 2346889999999999988
Q ss_pred Hh
Q 043334 901 LK 902 (903)
Q Consensus 901 l~ 902 (903)
+.
T Consensus 290 l~ 291 (368)
T d1v2da_ 290 LA 291 (368)
T ss_dssp HH
T ss_pred hh
Confidence 75
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=3.3e-33 Score=317.32 Aligned_cols=302 Identities=12% Similarity=0.057 Sum_probs=224.1
Q ss_pred hhccCCCCHHHHHHHHhhhhccCCCCCeEEccCC---CCCCC--CcHHHHHHHHHHHH------ccCCCCCchHHHHHHH
Q 043334 590 EMIGFSRSAISVLNSAELSITETPNSGLIHMDVD---QSFLP--IPSLVKAAIFESFA------RQNMSESEIDVTPSIQ 658 (903)
Q Consensus 590 ~~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g---~p~~~--~p~~v~~al~~al~------~y~~~~G~~~lr~ala 658 (903)
++...+++++..+.++-+ ..+.++.|||++| +++.. +++.++++...... +|.+..|.++||++++
T Consensus 7 ~~~~~~~d~i~~~~~~~~---~d~~~~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia 83 (412)
T d1yaaa_ 7 NIELLPPDALFGIKQRYG---QDQRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAA 83 (412)
T ss_dssp TCCCCCCCTTHHHHHHHH---TCCCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHH
T ss_pred cCCcCCCChHHHHHHHHh---cCCCCCcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHH
Confidence 456667777777775433 2455678999999 34432 45778777544432 2777899999999999
Q ss_pred HHHHhhcCCCCCCCCcEEe--cCchHHHHHHH--HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccC
Q 043334 659 QYIKSNFGFPIDINAEFIY--ADCSQSLFNKL--VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMT 734 (903)
Q Consensus 659 ~~l~~~~G~~~~pe~~I~v--t~Gs~~al~~l--l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld 734 (903)
+++.+.++....++ .+++ +.|+..++..+ +..+++|||.|++++|+|+.|...++..|++++.+|+..++++.++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~ 162 (412)
T d1yaaa_ 84 KIIFGTQSDALQED-RVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLD 162 (412)
T ss_dssp HHHHCTTCHHHHTT-CEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEEC
T ss_pred HHHhcccCcccccc-ceeEEecccchhHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCCceeccccccccccccc
Confidence 99988877554433 3322 23444444333 3455789999999999999999999999999999999887889999
Q ss_pred HHHHHHHhhcCC--CcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhc
Q 043334 735 EKTLVTILETVK--KPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLY 812 (903)
Q Consensus 735 ~~~L~~~l~~~~--~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~ 812 (903)
.+.+.+.+...+ +.++++++|| ||||.++|.+++++|+++|++++++||+||+|.++.|++................
T Consensus 163 ~~~~~~~~~~~~~~~~~i~i~~P~-NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~ 241 (412)
T d1yaaa_ 163 LNGFLNAIQKAPEGSIFVLHSCAH-NPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLS 241 (412)
T ss_dssp HHHHHHHHHHSCTTCEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTT
T ss_pred chhhhcccccCCCceEEEEecCCC-CCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccc
Confidence 998888776433 3478888997 9999999999999999999999999999999999999875421111111112122
Q ss_pred cCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH-------H----HHhC--CCCCCCcHHHHHHHHHHHhccccc
Q 043334 813 SSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD-------A----FSSF--PGLSKPHSTVRYAIKKLLGLRERK 879 (903)
Q Consensus 813 ~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~-------~----l~~~--~~~~~~s~~~Q~aa~~~L~~~~~~ 879 (903)
. .+++|++.||||.|+++|||+||++++++ +++ . +... ....+++...|.++..++.. ...
T Consensus 242 ~----~~~~i~~~s~SK~~~~~G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~-~~~ 315 (412)
T d1yaaa_ 242 T----VSPVFVCQSFAKNAGMYGERVGCFHLALT-KQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLET-PEL 315 (412)
T ss_dssp T----TCCEEEEEECTTTSCCGGGCEEEEEEECC-SCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHS-HHH
T ss_pred c----CCCeEEEEecCCccccCcCceEEEEEchh-hhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcC-hHH
Confidence 2 25899999999999999999999999864 221 1 1111 23778999999999999952 222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 043334 880 ARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+.++++.+++.|++||+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~~r~~l~ 338 (412)
T d1yaaa_ 316 TEQWHKDMVTMSSRITKMRHALR 338 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999876
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-33 Score=318.74 Aligned_cols=279 Identities=13% Similarity=0.037 Sum_probs=217.8
Q ss_pred CCCCCeEEccCCC---CC--CCCcHHHHHHHHHHHH------ccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCc
Q 043334 612 TPNSGLIHMDVDQ---SF--LPIPSLVKAAIFESFA------RQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADC 680 (903)
Q Consensus 612 ~~~~~~IdLs~g~---p~--~~~p~~v~~al~~al~------~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~G 680 (903)
.+.++.|||++|. ++ .+.++.++++...... .|.+..|.++||+++++++.+.++....++ +|+++.|
T Consensus 23 d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~-~i~~~~~ 101 (397)
T d3tata_ 23 DPRSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQ-RVATIQT 101 (397)
T ss_dssp SCCSSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTT-CEEECCB
T ss_pred CCCCCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcC-cEEEecC
Confidence 4456679999993 43 2345778887655432 278889999999999999999888877666 7888776
Q ss_pred hHHH----HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC--CCcEEEEEC
Q 043334 681 SQSL----FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV--KKPWVYISG 754 (903)
Q Consensus 681 s~~a----l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~--~~~~vil~~ 754 (903)
++++ +.+++..+++|||.|++++|+|+.|...++..|++++.+|++.++++.+|.+.+.+.+... ..+++++++
T Consensus 102 ~~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (397)
T d3tata_ 102 LGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181 (397)
T ss_dssp SHHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSS
T ss_pred chhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecC
Confidence 6653 6666677789999999999999999999999999999999998888889998888776532 224777888
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|+ ||||.++|.+++++|+++|++++++||+||+|.++.|+++.. .+........ .+++++++||||+++++
T Consensus 182 p~-NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~-----~~~~~~~~~~---~~~~i~~~s~SK~~~~~ 252 (397)
T d3tata_ 182 CH-NPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEED-----AYAIRAIASA---GLPALVSNSFSKIFSLY 252 (397)
T ss_dssp SC-SSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHH-----HHHHHHHHTT---TCCCEECBCCHHHHTBT
T ss_pred CC-CCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCccc-----chhhhhhhhc---CCceEEEecCccccccc
Confidence 86 999999999999999999999999999999999999986432 1122222222 25899999999999999
Q ss_pred cceeeEEEeCcHHHHHHHHh-------CC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHPQLVDAFSS-------FP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~-------~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|||+||++++.. +++...+ .. ...+++...|.++..++.. ......+.++++.+++.|++||+.+.
T Consensus 253 G~RiG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~l~ 327 (397)
T d3tata_ 253 GERVGGLSVMCE-DAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLND-EALKASWLAEVEEMRTRILAMRQELV 327 (397)
T ss_dssp TTCCBCCEEECS-STTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccccccchh-HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998865 3333222 11 2667788899988888852 22234456788888899999998875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=2.9e-32 Score=307.62 Aligned_cols=296 Identities=11% Similarity=0.021 Sum_probs=214.3
Q ss_pred cCCCCHHHHHHHHhhhhccCCCCCeEEccCC---CCC--CCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHH
Q 043334 593 GFSRSAISVLNSAELSITETPNSGLIHMDVD---QSF--LPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIK 662 (903)
Q Consensus 593 ~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g---~p~--~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~ 662 (903)
..|++++..+..+-+ ....++.|||++| +++ .++++.+++++.+.+. .|.+..|.++||+++++++.
T Consensus 7 ~~p~d~i~~~~~~~~---~d~~~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~ 83 (396)
T d2q7wa1 7 AAPADPILGLADLFR---ADERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLF 83 (396)
T ss_dssp CCCC--------------------CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHh---ccCCCCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHH
Confidence 344555665554222 1345667999999 333 3456888888877765 37778999999999999999
Q ss_pred hhcCCCCCCCC-cEEecCchHHHHHHH--HHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHH
Q 043334 663 SNFGFPIDINA-EFIYADCSQSLFNKL--VLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLV 739 (903)
Q Consensus 663 ~~~G~~~~pe~-~I~vt~Gs~~al~~l--l~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~ 739 (903)
++++....++. .+++|.|+..++.++ +.+.+++||.|++++|+|+.|..+++..|++++.+++..++++..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 163 (396)
T d2q7wa1 84 GKGSALINDKRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALI 163 (396)
T ss_dssp CTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHH
T ss_pred hhcCCcccccceeeeccchHHHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCCeeEecccccccccccccchHH
Confidence 98886554331 234566665555443 344578999999999999999999999999999999988888888887777
Q ss_pred HHhhcC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCC
Q 043334 740 TILETV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNS 817 (903)
Q Consensus 740 ~~l~~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~ 817 (903)
+..... .+.++++++|| ||||.++|.+++++|+++|++++++||+||+|+++.|+++... ..........
T Consensus 164 ~~~~~~~~~~~~i~~~~P~-NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~-----~~~~~~~~~~-- 235 (396)
T d2q7wa1 164 NSLNEAQAGDVVLFHGCCH-NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDA-----EGLRAFAAMH-- 235 (396)
T ss_dssp HHHTTCCTTCEEEEECSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHT-----HHHHHHHHHC--
T ss_pred HHHHHhccCcEEEEecCCc-CCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCc-----hHhhhhhhhc--
Confidence 655432 23488888897 9999999999999999999999999999999999999865421 1122222221
Q ss_pred CCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC---------CCCCCcHHHHHHHHHHHhcccccchhHHHHHH
Q 043334 818 SFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP---------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVA 888 (903)
Q Consensus 818 ~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~---------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~ 888 (903)
++++++.|+||.++++|||+||+++++. .++.+.+.. ..++++...|.++..++.. ......++++++
T Consensus 236 -~~~~~~~s~sk~~~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~~ 312 (396)
T d2q7wa1 236 -KELIVASSYSKNFGLYNERVGACTLVAA-DSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSN-DALRAIWEQELT 312 (396)
T ss_dssp -SCEEEEEECTTTTTCGGGCCEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred -ccccccccccccccccCCCccccccchh-HHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4789999999999999999999999876 555444322 2677888999998888842 112234678899
Q ss_pred HHHHHHHHHHHHHh
Q 043334 889 EHIRNLESRSKRLK 902 (903)
Q Consensus 889 ~~r~~y~~Rr~~l~ 902 (903)
++++.|++||+.++
T Consensus 313 ~~~~~~~~~r~~l~ 326 (396)
T d2q7wa1 313 DMRQRIQRMRQLFV 326 (396)
T ss_dssp HC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.97 E-value=9.1e-32 Score=305.19 Aligned_cols=299 Identities=10% Similarity=-0.017 Sum_probs=217.2
Q ss_pred hccCCCCHHHHHHHHhhhhccCCCCCeEEccCC---CCC--CCCcHHHHHHHHHHHH------ccCCCCCchHHHHHHHH
Q 043334 591 MIGFSRSAISVLNSAELSITETPNSGLIHMDVD---QSF--LPIPSLVKAAIFESFA------RQNMSESEIDVTPSIQQ 659 (903)
Q Consensus 591 ~~~l~~s~i~~l~~a~~a~~~~~~~~~IdLs~g---~p~--~~~p~~v~~al~~al~------~y~~~~G~~~lr~ala~ 659 (903)
+...++..+..+...-+ ..+.++.|||++| +++ .+.++.++++...... +|.+..|.++||+++++
T Consensus 9 ~~~~~~~~i~~l~~~~~---~d~~~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~ 85 (412)
T d1ajsa_ 9 VPQAQPVLVFKLIADFR---EDPDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASR 85 (412)
T ss_dssp CCCCCCCHHHHHHHHHH---TCCCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHH
T ss_pred CCcCCCChHHHHHHHHh---cCCCCCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHH
Confidence 44455666776665322 1456778999999 333 3345677777555432 27788999999999999
Q ss_pred HHHhhcCCCCCCCC-cEEecCchHHHHHH-------HHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEec-CCCCCC
Q 043334 660 YIKSNFGFPIDINA-EFIYADCSQSLFNK-------LVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIP-TESEVG 730 (903)
Q Consensus 660 ~l~~~~G~~~~pe~-~I~vt~Gs~~al~~-------ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~-~~~~~~ 730 (903)
++.+.++.+..++. .++.|.|.+.++.. ++.++++|||+|++++|+|+.|..+++..|++++.++ ..++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~~~v~~~~~~~~~~ 165 (412)
T d1ajsa_ 86 LALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEK 165 (412)
T ss_dssp HHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTCSCEEEEECEETTT
T ss_pred HHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCCeEEEeeccccccc
Confidence 99988877655442 23344454444433 3334479999999999999999999999999876654 444566
Q ss_pred cccCHHHHHHHhhc--CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhh
Q 043334 731 FKMTEKTLVTILET--VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCL 808 (903)
Q Consensus 731 f~ld~~~L~~~l~~--~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~ 808 (903)
+.+|.+.+++.+.. ...+++++++|| ||||.++|.+++++|+++|++||++||+||+|.++.|++...... ...
T Consensus 166 ~~~d~~~~~~~~~~~~~~~~~il~~~P~-NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~---~~~ 241 (412)
T d1ajsa_ 166 RGLDLQGFLSDLENAPEFSIFVLHACAH-NPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAW---AIR 241 (412)
T ss_dssp TEECHHHHHHHHHHSCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTH---HHH
T ss_pred ccccHHHHHHHHHhccCCcEEEEecCCC-CCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchh---hhh
Confidence 78898888776543 223478888997 999999999999999999999999999999999999987542111 111
Q ss_pred hhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhC---------CCCCCCcHHHHHHHHHHHhccccc
Q 043334 809 SKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF---------PGLSKPHSTVRYAIKKLLGLRERK 879 (903)
Q Consensus 809 ~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~---------~~~~~~s~~~Q~aa~~~L~~~~~~ 879 (903)
.. ... .++++++.|+||+++++|||+||++++.. .++.+.++ ....+++...|.++..++.. ...
T Consensus 242 ~~-~~~---~~~~~~~~s~sk~~~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 315 (412)
T d1ajsa_ 242 YF-VSE---GFELFCAQSFSKNFGLYNERVGNLTVVAK-EPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSD-PEL 315 (412)
T ss_dssp HH-HHT---TCCEEEEEECTTTSCCGGGCEEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHS-HHH
T ss_pred hh-hhh---cccccccccccccccCCCCCccccccchh-HHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcC-HHH
Confidence 11 122 25799999999999999999999999875 44333322 12677888999999888852 222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHh
Q 043334 880 ARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 880 ~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+.++++.+++.|++||+.+.
T Consensus 316 ~~~~~~~~~~~~~~l~~~r~~l~ 338 (412)
T d1ajsa_ 316 FHEWTGNVKTMADRILSMRSELR 338 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788899999999999875
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.97 E-value=5.3e-31 Score=292.56 Aligned_cols=258 Identities=14% Similarity=0.183 Sum_probs=208.1
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHc--cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFAR--QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVL 690 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~--y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~ 690 (903)
.+.++|||+.|+|++++|+.+++++.+++.. +++..|..+||+++++++ |++.+ +|++|+|+++++..++.
T Consensus 20 ~p~~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~~~~~Lr~aia~~~----~v~~~---~I~~~~g~~~~~~~~~~ 92 (355)
T d1lc5a_ 20 SPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHH----QVPAS---WILAGNGETESIFTVAS 92 (355)
T ss_dssp CGGGSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCTTCHHHHHHHHHHH----TSCGG---GEEEESSHHHHHHHHHH
T ss_pred ChhheEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHh----CCCHH---HEEecccHHHHHHHHHh
Confidence 4457999999999999999999999887543 124456778888887764 66544 89999999999998776
Q ss_pred HhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHH
Q 043334 691 CCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIE 770 (903)
Q Consensus 691 ~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~ 770 (903)
.+ .|+.+++..|+|+.|.......+++++.+|++.+++|.++. .+.+.+.+++ ++++++||| ||||.+++.++++
T Consensus 93 ~~--~~~~~~v~~p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~v~l~nP~-NPtG~~~~~e~l~ 167 (355)
T d1lc5a_ 93 GL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTD-AILEALTPDL-DCLFLCTPN-NPTGLLPERPLLQ 167 (355)
T ss_dssp HH--CCSEEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCT-THHHHCCTTC-CEEEEESSC-TTTCCCCCHHHHH
T ss_pred hh--ccccccccCCccceeccccccccccceeeeeeccCCcccee-eeeecccccc-ceeeeeccc-Ccccccchhhhhh
Confidence 65 45667778899999999999999999999998878888774 4555666666 599999998 9999999999999
Q ss_pred HHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHH
Q 043334 771 NILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVD 850 (903)
Q Consensus 771 eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~ 850 (903)
+|+++|++++++||+||+|.++.+++... .... .. .+++|+++||||.||+||+|+||++++++.+.+
T Consensus 168 ~i~~~a~~~~~~li~De~y~~~~~~~~~~--------~~~~-~~---~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~ 235 (355)
T d1lc5a_ 168 AIADRCKSLNINLILDEAFIDFIPHETGF--------IPAL-KD---NPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMA 235 (355)
T ss_dssp HHHHHHHHHTCEEEEECTTGGGSTTCCCS--------GGGC-TT---CTTEEEEEESTTTTTCTTTCCEEEECCCHHHHH
T ss_pred hhhhhccccccccccccceeeeeeecccc--------cccc-cc---cccceeecccccccccccccccceeccchhhhH
Confidence 99999999999999999998777665542 1111 11 258999999999999999999999999875667
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 851 AFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 851 ~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
.+.+.......+.+.|.++..+|. +. +++.+.++.++++++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~l~--~~------~~~~~~~~~~~~~~~~~~ 279 (355)
T d1lc5a_ 236 RMRRQQMPWSVNALAALAGEVALQ--DS------AWQQATWHWLREEGARFY 279 (355)
T ss_dssp HHHHHSCTTCSCHHHHHHHHHGGG--CH------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCcccccccccccccccc--cc------chhHHHHHHHHHHHHHHH
Confidence 777666677889999999999994 22 566677777777777653
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=1.5e-31 Score=301.15 Aligned_cols=293 Identities=14% Similarity=0.019 Sum_probs=219.2
Q ss_pred CCCHHHHHHHHhhhhccCCCCCeEEccCCC---CC--CCCcHHHHHHHHHHHH-----ccCCCCCchHHHHHHHHHHHhh
Q 043334 595 SRSAISVLNSAELSITETPNSGLIHMDVDQ---SF--LPIPSLVKAAIFESFA-----RQNMSESEIDVTPSIQQYIKSN 664 (903)
Q Consensus 595 ~~s~i~~l~~a~~a~~~~~~~~~IdLs~g~---p~--~~~p~~v~~al~~al~-----~y~~~~G~~~lr~ala~~l~~~ 664 (903)
++.++..+..+-++ +..++.|||++|. ++ .++++.+.+++.+.+. +|.+..|.++||+++++++.+.
T Consensus 9 ~~d~i~~l~~~~~~---d~~~~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~~~~~~Y~p~~G~~~lr~aia~~~~~~ 85 (394)
T d2ay1a_ 9 APDKILALMGEFRA---DPRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGD 85 (394)
T ss_dssp CCCSHHHHHHHHHH---CCCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGG
T ss_pred CCChHHHHHHHHhC---CCCCCCEEccCCCccCCCCCCCCCHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 44456666543221 4566789999994 22 3456788888877764 2777899999999999999987
Q ss_pred cCCCCCCCCcEEecCc-hHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh
Q 043334 665 FGFPIDINAEFIYADC-SQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE 743 (903)
Q Consensus 665 ~G~~~~pe~~I~vt~G-s~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~ 743 (903)
.+....++ .+++++| +...+...+..++++||.|++++|+|+.|...++.+|++++.+++..++++..+.+.+++...
T Consensus 86 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~ 164 (394)
T d2ay1a_ 86 GLKSETTA-TLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLA 164 (394)
T ss_dssp GCCGGGEE-EEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHH
T ss_pred cccccccc-ceeccCchHHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCCEEEEecccchhcccccchhHHHHHh
Confidence 77655444 3444333 344566666778899999999999999999999999999999999877778788877776654
Q ss_pred cC--CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 744 TV--KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 744 ~~--~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
.. .+.++++++|| ||||.++|.+++++|+++|++++++||+||+|.++.|++.... +........ ..++
T Consensus 165 ~~~~~~~i~~~~~p~-NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~-----~~~~~~~~~---~~~~ 235 (394)
T d2ay1a_ 165 AAKKGDMVLLHGCCH-NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDA-----AGTRLIASR---IPEV 235 (394)
T ss_dssp TCCTTCEEEEESSSC-TTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHH-----HHHHHHHHH---CSSE
T ss_pred hcccCcEEEEeCCCC-CCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccc-----hhhhhhhhh---cccc
Confidence 32 22366667776 9999999999999999999999999999999999999875420 111111111 1479
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhC---------CCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSF---------PGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIR 892 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~---------~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~ 892 (903)
+++.|+||.++++|||+||++++.. .++...+. ...++++...|.++..++.. ....+.+.++++.+++
T Consensus 236 ~~~~s~sk~~~~~G~R~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~ 313 (394)
T d2ay1a_ 236 LIAASCSKNFGIYRERTGCLLALCA-DAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTT-PELRADWMAELEAVRS 313 (394)
T ss_dssp EEEEECTTTTTCGGGCEEEEEEECS-SHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred cccccccccccCCcccccchhhchh-HHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 44444332 12567778888888888842 2223446778888999
Q ss_pred HHHHHHHHHh
Q 043334 893 NLESRSKRLK 902 (903)
Q Consensus 893 ~y~~Rr~~l~ 902 (903)
.|++||+.+.
T Consensus 314 ~~~~~r~~l~ 323 (394)
T d2ay1a_ 314 GMLRLREQLA 323 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999875
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=1.6e-30 Score=286.75 Aligned_cols=248 Identities=18% Similarity=0.250 Sum_probs=201.7
Q ss_pred cCCCCCeEEccCCCCCCCCcHHHHHHHHHHHHc----cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 611 ETPNSGLIHMDVDQSFLPIPSLVKAAIFESFAR----QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 611 ~~~~~~~IdLs~g~p~~~~p~~v~~al~~al~~----y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
+.+++++|+|++|+|++++|+.+.+++.+.+.. |.+..|.+++|+++++++++. +++ ++ +|++|+|+++++.
T Consensus 15 ~~~~~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~~~~yp~~g~~~Lr~aia~~~~~~-~v~--~d-~I~it~G~~~~l~ 90 (334)
T d2f8ja1 15 ETEKRDKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYYDSPDEELIEKILSYLDTD-FLS--KN-NVSVGNGADEIIY 90 (334)
T ss_dssp CCCCCCSEECSSCCCSSCCCHHHHHHHHHHCCTTGGGSCCCSSCHHHHHHHHHHHTCS-SCC--GG-GEEEEEHHHHHHH
T ss_pred cccCCCceEEECCCCCCCCCHHHHHHHHHHhhcchhcCCCCCCcHHHHHHHHHHhccc-CCC--cc-eEEecCcchhHHH
Confidence 457789999999999999999999998888753 556789999999999998763 554 44 9999999999998
Q ss_pred HHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCH
Q 043334 687 KLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSN 766 (903)
Q Consensus 687 ~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~ 766 (903)
+++ ++||+|++++|+|+.|...++..|++++.+|++++..+ + +...+++ ++++++||+ ||||.+++.
T Consensus 91 ~l~----~~~d~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~--~-----~~~~~~~-~~l~l~nP~-NPtG~~~s~ 157 (334)
T d2f8ja1 91 VMM----LMFDRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--P-----EVNVGEG-DVVFIPNPN-NPTGHVFER 157 (334)
T ss_dssp HHH----HHSSEEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCC--C-----CCCCCTT-EEEEEESSC-TTTCCCCCH
T ss_pred HHh----hhccccccccccccccccchhccCCccccccccccccc--c-----ccccccc-eEEEecccc-cccceeecH
Confidence 754 46799999999999999999999999999999864322 1 1223344 589999998 999999998
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 767 KEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 767 eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+++.++ .++++++|+||+|.++.+.... .. ... .+++|+++||||+++++|||+||++++++
T Consensus 158 ~~l~~~----~~~~~~ii~Dd~~~~~~~~~~~---------~~-~~~----~~~~i~~~S~SK~~~~~G~R~G~~~~~~~ 219 (334)
T d2f8ja1 158 EEIERI----LKTGAFVALDEAYYEFHGESYV---------DF-LKK----YENLAVIRTFSKAFSLAAQRVGYVVASEK 219 (334)
T ss_dssp HHHHHH----HTTTCEEEEECTTGGGTCCCCG---------GG-GGT----CSSEEEEEESTTTSSCTTTCEEEEEECHH
T ss_pred HHhhcc----ccceeEEeecccchhhcccccc---------cc-ccc----CceEEEEecCccccchhhhhhhhcccchH
Confidence 776553 5689999999999654433221 11 111 25899999999999999999999999987
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHh
Q 043334 847 QLVDAFSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 847 ~li~~l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
+++++.+++...+.+.++|.++..++. + .+++++.++.|++||+.+.
T Consensus 220 -~i~~l~~~~~~~~~s~~~~~~a~~~l~--~------~~~~~~~~~~~~~~r~~l~ 266 (334)
T d2f8ja1 220 -FIDAYNRVRLPFNVSYVSQMFAKVALD--H------REIFEERTKFIVEERERMK 266 (334)
T ss_dssp -HHHHHHHHSCTTCSCHHHHHHHHHHHH--T------HHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhcccccchhhhhhcccccc--c------ccchhhHHHHHHHHHHHHH
Confidence 999999998888899999999988884 2 2678888899999998875
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.1e-29 Score=282.14 Aligned_cols=252 Identities=17% Similarity=0.209 Sum_probs=196.3
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
.+.+.|.|+.|++++++++.+.++ .+.+| +..+..++|++++++ +|++. + +|++|+|+++++..++.++
T Consensus 25 ~~~~~i~L~~ne~p~~~~~~~~~~---~l~rY-Pd~~~~~Lr~~ia~~----~gv~p--e-~I~it~Gs~eai~~~~~~~ 93 (354)
T d1fg7a_ 25 GGNGDVWLNANEYPTAVEFQLTQQ---TLNRY-PECQPKAVIENYAQY----AGVKP--E-QVLVSRGADEGIELLIRAF 93 (354)
T ss_dssp TTTCSEECSSCCCSSCCCCCCCCC---CTTSC-CCSSCHHHHHHHHHH----HTSCG--G-GEEEESHHHHHHHHHHHHH
T ss_pred CCCCCEEeeCCCCCCCCCHHHHHH---HHhcC-CCCcHHHHHHHHHHH----hCCCh--H-HeeeccCchHHHHHHHHHh
Confidence 456789999999988876554332 23455 334456777777665 57764 4 9999999999999999999
Q ss_pred ccCCC-eEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 693 ILEGG-TLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 693 ~~pGD-~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
++||| .|+++.|+|+.|...++..|.+++.++.+ ++|.+|+++++..+. ++ +++++++|| ||||.+++.++++.
T Consensus 94 ~~pgd~~Vl~~~P~y~~~~~~~~~~g~~v~~~~~~--~~~~~d~~~l~~~~~-~~-~~v~~~~pn-NPtG~~~~~~~~~~ 168 (354)
T d1fg7a_ 94 CEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTL--DNWQLDLQGISDKLD-GV-KVVYVCSPN-NPTGQLINPQDFRT 168 (354)
T ss_dssp CCTTTCEEEECSSSCTHHHHHHHHHTCEEEECCCC--TTSCCCHHHHHTSCT-TE-EEEEEESSC-TTTCCCCCHHHHHH
T ss_pred hccccccccccccccccchhhhhccCceeeccccc--cccccchhhhhhccc-cc-ceeeccCCC-ccceeEeeeccccc
Confidence 99998 58899999999999999999999999885 479999999988764 34 599999998 99999999999999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
+.+.++ ++.++|+||+|.++.++.... . .... ..++++++||||.||++|+|+||++++++ +++.
T Consensus 169 ~~~~~~-~~~~~iidd~~~~f~~~~~~~------~---~~~~----~~~~iv~~S~SK~~~laGlRiGy~i~~~~-~i~~ 233 (354)
T d1fg7a_ 169 LLELTR-GKAIVVADEAYIEFCPQASLA------G---WLAE----YPHLAILRTLSKAFALAGLRCGFTLANEE-VINL 233 (354)
T ss_dssp HHHHHT-TTCEEEEECTTGGGSGGGCSG------G---GTTT----CTTEEEEEESSSTTCCGGGCCEEEEECHH-HHHH
T ss_pred cccccc-ccccccccccchhhccccccc------h---hhcc----cccceEEeCCccccCCCccccccccccch-hhhh
Confidence 888776 577788899886655443221 1 1112 25899999999999999999999999988 9999
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 852 FSSFPGLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 852 l~~~~~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+.+....+..+++.|.++..++.. .. ..+.....+.+.++|+.+
T Consensus 234 l~~~~~~~~~~~~~~~~a~~~~~~-~~-----~~~~~~~~~~~~~~r~~l 277 (354)
T d1fg7a_ 234 LMKVIAPYPLSTPVADIAAQALSP-QG-----IVAMRERVAQIIAEREYL 277 (354)
T ss_dssp HHHHSCSSCSCHHHHHHHHHHTSH-HH-----HHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCccchhhHHHHHHHHHHhh-hc-----cccccccchhhhhHHHHH
Confidence 999888888889999888877741 11 234444445555555554
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.92 E-value=4.6e-26 Score=258.17 Aligned_cols=251 Identities=9% Similarity=0.076 Sum_probs=186.3
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHH-------ccCCCCC----chHHHHHHHHHHHhhcCCCCCCCCcEEecCchH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFA-------RQNMSES----EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQ 682 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~-------~y~~~~G----~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~ 682 (903)
+.-++|++.|+|.+..|-+..++...+.. +|....+ .++|+++|++......+...+ +.+|++|+|++
T Consensus 55 ~~~~~~~~~gdp~~~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~~gna~t~-~~~IvvG~Gst 133 (425)
T d2hoxa1 55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAK-DRYIVFGVGVT 133 (425)
T ss_dssp TTCCEECCSCCCGGGHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCT-TCEEEEESHHH
T ss_pred CCceeeCCCCCCCCCCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhhhCCCCCC-CCEEEECCCHH
Confidence 34589999999998777666555544421 1222222 378889998877665444344 44799999999
Q ss_pred HHHHHHHHHh--------ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEEC
Q 043334 683 SLFNKLVLCC--------ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISG 754 (903)
Q Consensus 683 ~al~~ll~~l--------~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~ 754 (903)
++|..++.+| ++|||+|+++.|+|+.|...++..|.+.+. |.+|.+.+++.+++++ +++++||
T Consensus 134 eli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~~~~~--------~~~D~~~~~~~~~~~~-~ii~l~s 204 (425)
T d2hoxa1 134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYV--------WAGNAANYVNVSNPEQ-YIEMVTS 204 (425)
T ss_dssp HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCBTTEE--------EEEEGGGGTTCSCGGG-EEEEEES
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCCCCCc--------cCCCHHHHHhhCCCCc-eEEEEEC
Confidence 9999999999 579999999999999999999998876544 4566677777777766 5999999
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccc
Q 043334 755 PTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTG 834 (903)
Q Consensus 755 P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~ 834 (903)
|| ||||.+.. +..+++.+|.||+|.+..|.+-. .. .+++|+++||||+||++
T Consensus 205 Pn-NPtG~l~~----------~v~~~~~~I~DEaY~~~~f~~~~--------------~~---~~~~Ivl~S~SK~fgla 256 (425)
T d2hoxa1 205 PN-NPEGLLRH----------AVIKGCKSIYDMVYYWPHYTPIK--------------YK---ADEDILLFTMSKFTGHS 256 (425)
T ss_dssp SC-TTTCCCCC----------CSSTTCEEEEECTTCSTTTSCCC--------------SC---BCCSEEEEEHHHHTSCG
T ss_pred CC-CCCcchhh----------hhhhCCEEEEeccccCccccchh--------------hh---cCCeEEEEeCHHhccCc
Confidence 98 99998743 23468999999999654432211 11 25899999999999999
Q ss_pred cceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHHhcccc----cchhHHHHHHHHHHHHHHHHHHHh
Q 043334 835 ALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLLGLRER----KARDLMNAVAEHIRNLESRSKRLK 902 (903)
Q Consensus 835 GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L~~~~~----~~~~~~~~l~~~r~~y~~Rr~~l~ 902 (903)
|||+||++++++.+++++.++.. ..+++.++|.++..+|..... ......++.+..++.+++|++.+.
T Consensus 257 GlRiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~ 330 (425)
T d2hoxa1 257 GSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNIT 330 (425)
T ss_dssp GGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHH
T ss_pred chheeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988768888887765 788999999999999841100 000112456667777888877653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=7.6e-25 Score=232.77 Aligned_cols=182 Identities=21% Similarity=0.322 Sum_probs=148.1
Q ss_pred CcccCCcccCcchhHHHHHH-hhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 1 MMVIPSIFIPEDWSFTFYEG-LNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 1 ~~~~p~vfiP~~w~~~~~~~-L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
+.|.|+|||||..+..+.+. +..... .+.+|||+|||||.+++.++...|..+|+|+|+|+.+++.|++|+..+++
T Consensus 81 ~~v~~~VlIPRpeTE~lv~~~l~~~~~---~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~ 157 (274)
T d2b3ta1 81 LFVSPATLIPRPDTECLVEQALARLPE---QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI 157 (274)
T ss_dssp EECCTTSCCCCTTHHHHHHHHHHHSCS---SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred EEEeccccccccchhhhhhhHhhhhcc---cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc
Confidence 36899999999777766665 343433 56789999999999999999999999999999999999999999999987
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
.+++++++|+.+..... +||+||+||||+...+...+. .+..+ .+..++.+
T Consensus 158 ----------------~~v~~~~~d~~~~~~~~--~fDlIvsNPPYi~~~~~~~~~-~v~~~---------eP~~AL~~- 208 (274)
T d2b3ta1 158 ----------------KNIHILQSDWFSALAGQ--QFAMIVSNPPYIDEQDPHLQQ-GDVRF---------EPLTALVA- 208 (274)
T ss_dssp ----------------CSEEEECCSTTGGGTTC--CEEEEEECCCCBCTTCHHHHS-SGGGS---------SCSTTTBC-
T ss_pred ----------------ccceeeecccccccCCC--ceeEEEecchhhhhhhhcccc-ccccc---------chhhhccc-
Confidence 47999999999875443 899999999999876543322 12222 34445554
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+.+|+..++++++++.++|+|||.++++++..+.... .+++++.||..++++++.
T Consensus 209 --g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v-~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 209 --ADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAV-RQAFILAGYHDVETCRDY 263 (274)
T ss_dssp --HHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHH-HHHHHHTTCTTCCEEECT
T ss_pred --ccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHH-HHHHHHCCCCeEEEEECC
Confidence 7899999999999999999999999999998776544 689999999876665554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=3.6e-21 Score=203.76 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=133.3
Q ss_pred cccCCcccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 2 MVIPSIFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 2 ~~~p~vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
.|.|+|||||..+..+.+.+..... .....+|+|+|||+|.+++.+++ .++++|+|+|+|+++++.|++|++.+++
T Consensus 83 ~v~~~vlIPRpeTE~lv~~~~~~~~-~~~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~-- 158 (271)
T d1nv8a_ 83 LVEEGVFVPRPETEELVELALELIR-KYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGV-- 158 (271)
T ss_dssp ECCTTSCCCCTTHHHHHHHHHHHHH-HHTCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTC--
T ss_pred EEecCccCchhhhhhhhhhhhhhhc-cccccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCC--
Confidence 5899999999877777665443211 01246899999999999999885 6899999999999999999999999987
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
..++.+..+|+.+......++||+||+||||+.... .++.++. .+|..|+.+
T Consensus 159 -------------~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~--~l~~~~~----------~EP~~AL~g--- 210 (271)
T d1nv8a_ 159 -------------SDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSA--HLPKDVL----------FEPPEALFG--- 210 (271)
T ss_dssp -------------TTSEEEEESSTTGGGGGGTTTCCEEEECCCCBCGGG--SCTTSCC----------CSCHHHHBC---
T ss_pred -------------CceeEEeecccccccccccCcccEEEEcccccCccc--ccceeee----------ecccccccc---
Confidence 367999999999876654458999999999996432 2222211 345566666
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCC
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGF 208 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf 208 (903)
+.+|++++++++. ++|+|||.++++++..+.... ++++.+.||
T Consensus 211 g~dGl~~~r~i~~---~~L~~~G~l~~Eig~~Q~~~v-~~l~~~~g~ 253 (271)
T d1nv8a_ 211 GEDGLDFYREFFG---RYDTSGKIVLMEIGEDQVEEL-KKIVSDTVF 253 (271)
T ss_dssp TTTSCHHHHHHHH---HCCCTTCEEEEECCTTCHHHH-TTTSTTCEE
T ss_pred ccchHHHHHHHHH---HhcCCCCEEEEEECHHHHHHH-HHHHHhCCE
Confidence 7899999988874 689999999999998776554 667777765
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=1.7e-19 Score=198.50 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCc
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGF 731 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f 731 (903)
++.+.+++.+++++|. + ++++|+|+++++..++.++++|||.|+++.++|......++..|++++.+|++...+|
T Consensus 47 ~l~~~~~~~~A~~~g~--e---~~~~t~g~t~a~~~~~~al~~~gd~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~ 121 (364)
T d2e7ja1 47 PIHDFIHNQLPKFLGC--D---VARVTNGAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPDY 121 (364)
T ss_dssp CHHHHHHTHHHHHTTS--S---EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTC
T ss_pred HHHHHHHHHHHHHhCc--C---EEEEECcHHHHHHHHHHHHhCCCcEEEeecccccccchHHHhccceEEEeeecccccc
Confidence 4677788888888885 2 6999999999999999999999999999999999988889999999999999876778
Q ss_pred ccCHHHHHHHhhcCCC----cEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhh
Q 043334 732 KMTEKTLVTILETVKK----PWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGC 807 (903)
Q Consensus 732 ~ld~~~L~~~l~~~~~----~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~ 807 (903)
.+|++.+++.+++.++ ++|++++|+ ||||.+.+ +++|+++|++||+++++|++|+...+.. +
T Consensus 122 ~i~~~~l~~~i~~~~k~~~~~lv~i~~~~-n~tG~~~~---l~~I~~ia~~~~i~livD~a~~~g~~~~------~---- 187 (364)
T d2e7ja1 122 AITPENFAQTIEETKKRGEVVLALITYPD-GNYGNLPD---VKKIAKVCSEYDVPLLVNGAYAIGRMPV------S---- 187 (364)
T ss_dssp CCCHHHHHHHHHHHTTTSCEEEEEEESSC-TTTCCCCC---HHHHHHHHHTTTCCEEEECTTTBTTBCC------C----
T ss_pred ccCHHHHHhhhhhhcccCCceEEEeecCC-CCCceeec---chhheeccccccchhhccccchhhhhhh------c----
Confidence 9999999999976443 378899998 99999988 7889999999999999999995322211 1
Q ss_pred hhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 808 LSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 808 ~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
...+ +..++++|++|.++.+| ++||++++++ +++.+..
T Consensus 188 ~~~~-------g~D~~~~S~~K~~~~~g-~~g~l~~~~~-~~~~~~~ 225 (364)
T d2e7ja1 188 LKEI-------GADFIVGSGHKSMAASG-PIGVMGMKEE-WAEIVLR 225 (364)
T ss_dssp HHHH-------TCSEEEEEHHHHSSCCS-SCEEEEECTT-TTTTTTC
T ss_pred cccc-------ccceeeeccccccCCCC-CEEEEEECHH-HHHHHHh
Confidence 1111 24588999999999777 7999999987 6665543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.80 E-value=3.4e-20 Score=194.32 Aligned_cols=219 Identities=16% Similarity=0.197 Sum_probs=141.7
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
|...+.+.+.... .++++|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+.
T Consensus 23 ~~~~~~~~~~~~~---~~~~~vLDiGCG~G~~~~~l~~~--g~~v~GvD~S~~ml~~A~~~~~~~~~------------- 84 (246)
T d1y8ca_ 23 WSDFIIEKCVENN---LVFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGL------------- 84 (246)
T ss_dssp HHHHHHHHHHTTT---CCTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHhC---CCCCeEEEEeCcCCHHHHHHHHh--CCccEeeccchhhhhhccccccccCc-------------
Confidence 4444444444432 35789999999999999999987 67999999999999999999877665
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
+++++++|+.++... ++||+|+|. .....++ ...+...++
T Consensus 85 ----~v~~~~~d~~~~~~~--~~fD~i~~~-----~~~~~~~-----------------------------~~~~~~~~~ 124 (246)
T d1y8ca_ 85 ----KPRLACQDISNLNIN--RKFDLITCC-----LDSTNYI-----------------------------IDSDDLKKY 124 (246)
T ss_dssp ----CCEEECCCGGGCCCS--CCEEEEEEC-----TTGGGGC-----------------------------CSHHHHHHH
T ss_pred ----cceeeccchhhhccc--cccccccee-----eeeeecc-----------------------------CCHHHHHHH
Confidence 699999999988644 389999852 1111111 112224478
Q ss_pred HHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeeccCCcceeEEecc
Q 043334 173 VEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKNSPHRFEFFMGL 252 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~~~~~f~f~~~~ 252 (903)
+++++++|||||.|++.+... ..+...+....|........+.+.. .+....+. ....++.
T Consensus 125 l~~~~~~LkpgG~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~~-- 185 (246)
T d1y8ca_ 125 FKAVSNHLKEGGVFIFDINSY---YKLSQVLGNNDFNYDDDEVFYYWEN----QFEDDLVS----------MYISFFV-- 185 (246)
T ss_dssp HHHHHTTEEEEEEEEEEEECH---HHHHTTTTTCCEEEEETTEEEEEEE----EEETTEEE----------EEEEEEE--
T ss_pred HHHHHHhCCCCeEEEEEeCCH---HHHhhhcccCceeecCCcEEEEEee----ccCCccee----------EEEEEEE--
Confidence 999999999999999976532 2222222222222211100000000 00000000 0111111
Q ss_pred cCCCcccHHHHHHhhhcCcceeeeeeeeeccccCchhHHHHHHHHh-ccccccccccccccccccccccccchHH
Q 043334 253 SGDLPICARTAWAYGKAGGRISHALSVYSCQLHQPNQVKKIFKFLK-NGFHEISSSLDLSFEDDSVADEKIPFLA 326 (903)
Q Consensus 253 ~~~~p~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~~d~~~~~~~~~~~~~~~~~ 326 (903)
+.+.... .+-+.|.++.+..+++.++|+ +||+.+..+.|+++.++.+.++|+.|||
T Consensus 186 ---------------~~~~~~~---~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~ 242 (246)
T d1y8ca_ 186 ---------------RDGEFYK---RFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLV 242 (246)
T ss_dssp ---------------ECSSSEE---EEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEE
T ss_pred ---------------ecCCceE---EEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEE
Confidence 0111111 122556677888999999999 9999999999999999999999999986
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.79 E-value=1.9e-19 Score=200.10 Aligned_cols=224 Identities=11% Similarity=0.021 Sum_probs=165.5
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
....++++....+.++.++...+.+ ..| .|.....+.+.+...+.++.... +++++++|+++++..++.++
T Consensus 18 g~~~i~~~~gl~~~~~~~~~~~~~~----~~~---~~~~~~~~~l~~~~~~~~~~~~~--e~~~~~~~~~~a~~~~l~al 88 (366)
T d2aeua1 18 GRDALYDLSGLSGGFLIDEKDKALL----NTY---IGSSYFAEKVNEYGLKHLGGDEN--DKCVGFNRTSSAILATILAL 88 (366)
T ss_dssp CGGGCEECSSCCCCCCCCHHHHHHH----TST---THHHHHHHHHHHHHHHHHTCCTT--EEEEEESSHHHHHHHHHHHH
T ss_pred ccchHhhhccCCCCCCccHHHHHHH----HHh---cCchhhHHHHHHHHHHHccCCCc--cEEEEeCCHHHHHHHHHHHh
Confidence 3345789988777777776655543 222 12222334444444444554322 28999999999999999887
Q ss_pred ccCCCeEEEc-CCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHH
Q 043334 693 ILEGGTLCFP-AGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIEN 771 (903)
Q Consensus 693 ~~pGD~Vlv~-~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~e 771 (903)
.++||.++++ .|+|+.+...++..|++++.. -|++++++++++++ ++|++++|+ ||+ +++.+++++
T Consensus 89 ~~~~~vi~~~~~~~~~~~~~~~~l~g~~~v~~---------~d~e~l~~~i~~~t-k~i~~~~p~-n~~--~~~~~~l~~ 155 (366)
T d2aeua1 89 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES---------DKVGEILNKIDKDT-LVIITGSTM-DLK--VIELENFKK 155 (366)
T ss_dssp CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE---------SCHHHHHTTCCTTE-EEEEECBCT-TSC--BCCHHHHHH
T ss_pred CCCCEEEEecCCCcchhHHHHHHhcCCeEECC---------CCHHHHHHhcCCCc-eEEEEEecC-CCC--cCCHHHHHH
Confidence 6444444444 689999999999999987533 16899999999888 489999998 986 468889999
Q ss_pred HHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHH
Q 043334 772 ILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDA 851 (903)
Q Consensus 772 I~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~ 851 (903)
|+++|+++|+++|+||+|+...|+....+ .... . +..++++|+||.+ +|||+||++++.+ +++.
T Consensus 156 i~~ia~~~~~~~i~De~y~~~~~~~~~~~-----~~~~-~-------~~di~~~S~sK~~--~g~~~G~i~~~~~-~i~~ 219 (366)
T d2aeua1 156 VINTAKNKEAIVFVDDASGARVRLLFNQP-----PALK-L-------GADLVVTSTDKLM--EGPRGGLLAGKKE-LVDK 219 (366)
T ss_dssp HHHHHHHHTCCEEEECTTHHHHHHHTTCC-----CHHH-H-------TCSEEEEETTSSS--SSCSCEEEEEEHH-HHHH
T ss_pred HHHHhccCcEEEEEecCccccccccccCC-----CHhh-c-------CceEEEecccccc--cccceeEEEecHH-HHHH
Confidence 99999999999999999987766544321 1111 1 2468899999965 5999999999988 9999
Q ss_pred HHhCCC--CCCCcHHHHHHHHHHHh
Q 043334 852 FSSFPG--LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 852 l~~~~~--~~~~s~~~Q~aa~~~L~ 874 (903)
+..... .++++++.|+++...|+
T Consensus 220 ~~~~~~~~g~~~~~~~~~a~~~aL~ 244 (366)
T d2aeua1 220 IYIEGTKFGLEAQPPLLAGIYRALK 244 (366)
T ss_dssp HHHHHHTTTCBCCHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCHHHHHHHHHHHH
Confidence 987654 56678889999988884
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.9e-18 Score=181.54 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=126.6
Q ss_pred CcccCCcccCcch----hHHHHHHh-hcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Q 043334 1 MMVIPSIFIPEDW----SFTFYEGL-NRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLY 75 (903)
Q Consensus 1 ~~~~p~vfiP~~w----~~~~~~~L-~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~ 75 (903)
+.|+|+++|||.- ...+.+.+ ........+..++||+|||+|.+++.+++..++++|+|+|+|+++++.|++|++
T Consensus 27 ~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~ 106 (250)
T d2h00a1 27 IDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE 106 (250)
T ss_dssp CCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH
T ss_pred EEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH
Confidence 3689999999711 11222222 222221234568999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCcchhhhcccCCcEEEEEcccccccc-----CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhc
Q 043334 76 LNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR-----DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSL 150 (903)
Q Consensus 76 ~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~-----~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l 150 (903)
.|+++ +++.+++++...... ...++||+|+|||||+...+............ .
T Consensus 107 ~n~l~---------------~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~-------~ 164 (250)
T d2h00a1 107 QNNLS---------------DLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRR-------P 164 (250)
T ss_dssp HTTCT---------------TTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC------------------------
T ss_pred HhCCC---------------cceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccc-------c
Confidence 99883 689998876654322 12347999999999997544322211111100 0
Q ss_pred cccccccc----cccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 151 SNYCALQG----FVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 151 ~~~~al~~----~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+..++.+ .....+...++.++++++..++++.|.+.+.++.......+.+++++.|+..++.
T Consensus 165 ~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ 231 (250)
T d2h00a1 165 PPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTY 231 (250)
T ss_dssp --------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEE
T ss_pred CchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEE
Confidence 11111111 1112233568999999999999999999998887666666778999999876555
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=1.5e-16 Score=160.52 Aligned_cols=143 Identities=27% Similarity=0.371 Sum_probs=110.3
Q ss_pred ccCCcccCc--chhHH-HHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccc
Q 043334 3 VIPSIFIPE--DWSFT-FYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNAL 79 (903)
Q Consensus 3 ~~p~vfiP~--~w~~~-~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl 79 (903)
..||||.|. |+..+ +.+.+.. .++++|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..+++
T Consensus 27 t~~gvF~~~~~d~~t~lLi~~l~~-----~~~~~VLDiGcG~G~~~~~la~~--~~~v~~iD~s~~~i~~a~~n~~~~~l 99 (194)
T d1dusa_ 27 TDSGVFSYGKVDKGTKILVENVVV-----DKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNL 99 (194)
T ss_dssp EETTSTTTTSCCHHHHHHHHHCCC-----CTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcCHHHHHHHHhCCc-----CCCCeEEEEeecCChhHHHHHhh--ccccceeeeccccchhHHHHHHHhCC
Confidence 468999885 44433 3343332 35789999999999999999876 56999999999999999999999887
Q ss_pred ccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccc
Q 043334 80 DEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGF 159 (903)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~ 159 (903)
+ ..++++..+|+.+...+ ++||+|++||||....
T Consensus 100 ~--------------~~~i~~~~~d~~~~~~~--~~fD~Ii~~~p~~~~~------------------------------ 133 (194)
T d1dusa_ 100 D--------------NYDIRVVHSDLYENVKD--RKYNKIITNPPIRAGK------------------------------ 133 (194)
T ss_dssp T--------------TSCEEEEECSTTTTCTT--SCEEEEEECCCSTTCH------------------------------
T ss_pred c--------------cceEEEEEcchhhhhcc--CCceEEEEcccEEecc------------------------------
Confidence 3 24699999999886443 3899999999986321
Q ss_pred ccccccHHHHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHH
Q 043334 160 VEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFER 205 (903)
Q Consensus 160 v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~ 205 (903)
+....+++++.++|||||.+++.+........+.+.+++
T Consensus 134 -------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~ 172 (194)
T d1dusa_ 134 -------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKD 172 (194)
T ss_dssp -------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHH
T ss_pred -------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHHHH
Confidence 112378999999999999999887766655555555554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.63 E-value=3.7e-16 Score=163.14 Aligned_cols=107 Identities=21% Similarity=0.358 Sum_probs=85.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|++++..+++ +++++++|+.++.
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~-----------------~i~~~~~d~~~l~ 101 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNL-----------------KIEFLQGDVLEIA 101 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----------------CCEEEESCGGGCC
T ss_pred CCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccc-----------------cchheehhhhhcc
Confidence 5679999999999999999987 67999999999999999999987765 7999999999986
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. +||+|++. ......+ ..+....++++++++|||||++++.
T Consensus 102 ~~~--~fD~I~~~-----~~~~~~~------------------------------~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 102 FKN--EFDAVTMF-----FSTIMYF------------------------------DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp CCS--CEEEEEEC-----SSGGGGS------------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc--ccchHhhh-----hhhhhcC------------------------------ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 553 89999852 1111111 0122347899999999999999997
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
...
T Consensus 145 ~~~ 147 (251)
T d1wzna1 145 FPC 147 (251)
T ss_dssp EEC
T ss_pred ecc
Confidence 654
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.1e-14 Score=162.13 Aligned_cols=199 Identities=13% Similarity=0.069 Sum_probs=149.2
Q ss_pred EEccCCCCCCCCcHHHHHHHHHHHHcc---C-CCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 618 IHMDVDQSFLPIPSLVKAAIFESFARQ---N-MSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 618 IdLs~g~p~~~~p~~v~~al~~al~~y---~-~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
|-|+.+.. -+.++.+.+++.+.+.+. + +..+. .+..+.+++.+++.+|++.+ +|++|+|+++++.
T Consensus 4 iYlD~aa~-~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~---~I~~~~~~t~~l~ 79 (391)
T d1p3wa_ 4 IYLDYSAT-TPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR---EIVFTSGATESDN 79 (391)
T ss_dssp EECBTTTC-CCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG---GEEEESSHHHHHH
T ss_pred EEeeCccc-cCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC---cEEEECCHHHHHH
Confidence 44554433 367888999998876532 1 11111 23345567778888898765 8999999999998
Q ss_pred HHHHHh----ccCCCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 687 KLVLCC----ILEGGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 687 ~ll~~l----~~pGD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
.++.++ +++||+|++.++.|+.+...+ +..|+++..+|.+. .+.+|++.+++++++++ ++|++++|+ ||
T Consensus 80 ~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~~~~~i~~~T-~lv~is~~~-n~ 155 (391)
T d1p3wa_ 80 LAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQR--NGIIDLKELEAAMRDDT-ILVSIMHVN-NE 155 (391)
T ss_dssp HHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCT--TSCCCHHHHHHHCCTTE-EEEECCSBC-TT
T ss_pred HHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCC--CCeEcHHHHHHhCCCCc-EEEEEECCC-CC
Confidence 888765 479999999999999876654 45699999999874 34589999999999988 599999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++|+++++|.+++.... + .+ +... +..+++.|..|.+|.+| +|
T Consensus 156 tG~~~~---~~~I~~~~~~~~~~~ivD~~~~~g~~---~---~d-------~~~~----~~D~~~~s~~k~~g~~g--~g 213 (391)
T d1p3wa_ 156 IGVVQD---IAAIGEMCRARGIIYHVDATQSVGKL---P---ID-------LSQL----KVDLMSFSGHKIYGPKG--IG 213 (391)
T ss_dssp TCCBCC---HHHHHHHHHHHTCEEEEECTTTBTTB---C---CC-------TTTS----CCSEEEEESTTTTSCSS--CE
T ss_pred CeeECC---HHHHHHHhccCCcEEEEeeccccCCc---c---cc-------chhc----cccccccccccccCCCc--eE
Confidence 999999 67889999999999999999853221 1 01 1111 24578889999987666 68
Q ss_pred EEEeCcH
Q 043334 840 FLVLNHP 846 (903)
Q Consensus 840 ~lv~~~~ 846 (903)
++...++
T Consensus 214 ~~~~~~~ 220 (391)
T d1p3wa_ 214 ALYVRRK 220 (391)
T ss_dssp EEEECBT
T ss_pred EEEEecc
Confidence 8888765
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=2e-15 Score=158.30 Aligned_cols=135 Identities=22% Similarity=0.227 Sum_probs=104.4
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccC
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLL 95 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~ 95 (903)
..++.|.... .++++|||+|||+|.+++++++. +.+|+|+|+|+.|++.|++|++.|++
T Consensus 109 l~l~~l~~~~---~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~---------------- 167 (254)
T d2nxca1 109 LALKALARHL---RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGV---------------- 167 (254)
T ss_dssp HHHHHHHHHC---CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHhhc---CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCC----------------
Confidence 3344454433 37899999999999999998875 67999999999999999999999987
Q ss_pred CcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHH
Q 043334 96 DRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 175 (903)
Q Consensus 96 ~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~ 175 (903)
++.++++|+.+..... +||+|++|.... .+..++++
T Consensus 168 -~~~~~~~d~~~~~~~~--~fD~V~ani~~~-----------------------------------------~l~~l~~~ 203 (254)
T d2nxca1 168 -RPRFLEGSLEAALPFG--PFDLLVANLYAE-----------------------------------------LHAALAPR 203 (254)
T ss_dssp -CCEEEESCHHHHGGGC--CEEEEEEECCHH-----------------------------------------HHHHHHHH
T ss_pred -ceeEEecccccccccc--ccchhhhccccc-----------------------------------------cHHHHHHH
Confidence 4678999988765433 899999872111 12367888
Q ss_pred HhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEe
Q 043334 176 GIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 176 ~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
+.++|||||++++.--.......+.+.+++.||+..+...
T Consensus 204 ~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 204 YREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp HHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEE
Confidence 9999999999998432334456667889999999877643
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.59 E-value=5.5e-15 Score=152.13 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=96.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++++++++|+.+++
T Consensus 15 ~~~rVLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~i~~A~~~~~~~~~----------------~~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 15 GNEEVLDVATGGGHVANAFAPF--VKKVVAFDLTEDILKVARAFIEGNGH----------------QQVEYVQGDAEQMP 76 (231)
T ss_dssp SCCEEEEETCTTCHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEECCC-CCC
T ss_pred CcCEEEEecccCcHHHHHHHHh--CCEEEEEECCHHHHhhhhhccccccc----------------cccccccccccccc
Confidence 5689999999999999999987 57999999999999999999988876 58999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. ++||+|+++--....+ ....+++++.++|||||++++.
T Consensus 77 ~~~-~~fD~v~~~~~l~~~~--------------------------------------d~~~~l~~~~r~LkpgG~l~i~ 117 (231)
T d1vl5a_ 77 FTD-ERFHIVTCRIAAHHFP--------------------------------------NPASFVSEAYRVLKKGGQLLLV 117 (231)
T ss_dssp SCT-TCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-cccccccccccccccC--------------------------------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 443 4899998642111100 0237899999999999999984
Q ss_pred eCC------------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MGG------------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~~------------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
... ......+.++++++||.+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 165 (231)
T d1vl5a_ 118 DNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEEL 165 (231)
T ss_dssp EEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEE
T ss_pred eCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 221 112334566777788876654
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=1.3e-13 Score=153.20 Aligned_cols=214 Identities=10% Similarity=0.081 Sum_probs=165.6
Q ss_pred CCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 613 PNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 613 ~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+++.+||+.++ -.+...|.++++..+++.+|+. ..|..++...+++.+++++|.+. -+++++|.. +
T Consensus 36 ~g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~----al~~~SG~~-a 110 (383)
T d1bs0a_ 36 DDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSR----ALLFISGFA-A 110 (383)
T ss_dssp TTEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSE----EEEESCHHH-H
T ss_pred CCeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCc----eEEecccch-h
Confidence 466788887543 2344678899999999988753 34677788889999999998653 255555555 5
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC--CCcEEEEECCCCCCccc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV--KKPWVYISGPTINPTGL 762 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~--~~~~vil~~P~~NPTG~ 762 (903)
...++.+++.++|.|++....+..+...++..+++++.++. .|.+++++.+... .+++|++..++ |++|.
T Consensus 111 n~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~~~~~~~~h-------nd~~~le~~l~~~~~~~~~vv~e~v~-s~~G~ 182 (383)
T d1bs0a_ 111 NQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAH-------NDVTHLARLLASPCPGQQMVVTEGVF-SMDGD 182 (383)
T ss_dssp HHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECT-------TCHHHHHHHHHSCCSSCEEEEEESBC-TTTCC
T ss_pred hHHHHHhhcCCCceEEeeccccHHHhhccccCCCcceEecc-------hHHHHHHHHhcccCCCceEEEecCCC-CCCCc
Confidence 55568999999999999999999999999999999998876 3678888877543 23588888887 99999
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLV 842 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv 842 (903)
+.+ +.+|+++|++||+++++||+++...++.... ........ ...+.+.||||.+|.+| |++.
T Consensus 183 i~p---l~~l~~l~~~~~~~livDeah~~gv~G~~g~------G~~~~~~~-----~~~~~~~t~~ka~g~~G---g~v~ 245 (383)
T d1bs0a_ 183 SAP---LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR------GSCWLQKV-----KPELLVVTFGKGFGVSG---AAVL 245 (383)
T ss_dssp BCC---HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC------CHHHHTTC-----CCSEEEEESSSTTSSCC---EEEE
T ss_pred ccc---hhHHHHHHHhcCcEEEeecceeeeecCCccc------chHHHcCC-----ccccccccccccccccc---cccc
Confidence 999 7778888999999999999998777765442 12222222 24667889999999888 9999
Q ss_pred eCcHHHHHHHHhCCC
Q 043334 843 LNHPQLVDAFSSFPG 857 (903)
Q Consensus 843 ~~~~~li~~l~~~~~ 857 (903)
++.. +++.++....
T Consensus 246 ~~~~-~~~~l~~~~~ 259 (383)
T d1bs0a_ 246 CSST-VADYLLQFAR 259 (383)
T ss_dssp ECHH-HHHHHHHHCH
T ss_pred cchh-HHHHHHhhch
Confidence 9987 8888876543
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.58 E-value=5.8e-14 Score=156.26 Aligned_cols=232 Identities=10% Similarity=0.066 Sum_probs=173.0
Q ss_pred CCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCC-------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNM-------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~-------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.++++|+.++ -.+...+.++++..+++++|+. ..|..++.+.+++.+++++|.+.. +++++|-.+.+
T Consensus 44 ~~~~~~FsSndYLGL~~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~a----ll~~sG~~An~ 119 (396)
T d2bwna1 44 KQDITVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAA----LVFSSAYNAND 119 (396)
T ss_dssp EEEEEECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEE----EEESCHHHHHH
T ss_pred CeEEEEEEcccccCcCCCHHHHHHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCce----eeeecchHHHH
Confidence 45688887554 3345788999999999988754 356778888999999999998643 77777777766
Q ss_pred HHHHHHh--ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhh---cCCCcEEEEECCCCCCc
Q 043334 686 NKLVLCC--ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILE---TVKKPWVYISGPTINPT 760 (903)
Q Consensus 686 ~~ll~~l--~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~---~~~~~~vil~~P~~NPT 760 (903)
.. +.++ +.+||.|+...-.+......++..+++++.++.. |.+.+++.++ +..+++|++..-. +.+
T Consensus 120 ~~-i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-------d~~~l~~l~~~~~~~~~~~iv~egvy-Smd 190 (396)
T d2bwna1 120 AT-LSTLRVLFPGLIIYSDSLNHASMIEGIKRNAGPKRIFRHN-------DVAHLRELIAADDPAAPKLIAFESVY-SMD 190 (396)
T ss_dssp HH-HHHHHHHSTTCEEEEETTCCHHHHHHHHHSCCCEEEECTT-------CHHHHHHHHHHSCTTSCEEEEEESBC-TTT
T ss_pred HH-HHHHhcccCCCceeehhhhhhccchhhhccccCceEeecc-------hHHHhhhHHhhhcccCceeEEEEeec-cCc
Confidence 64 5555 5688999999999999999999999999998763 4555655544 2333477777777 999
Q ss_pred ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeE
Q 043334 761 GLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGF 840 (903)
Q Consensus 761 G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~ 840 (903)
|.+.+ +.+|+++|++||+++++||+++.-.++.... .....+... ....|+++||||.||..| ||
T Consensus 191 Gd~ap---l~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~------G~~~~~~~~---~~~di~~gTlsKa~g~~G---g~ 255 (396)
T d2bwna1 191 GDFGP---IKEICDIAEEFGALTYIDEVHAVGMYGPRGA------GVAERDGLM---HRIDIFNGTLAKAYGVFG---GY 255 (396)
T ss_dssp CCBCC---HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC------CHHHHHTCG---GGCSEEEEESSSTTCSCC---EE
T ss_pred ccccc---cHhHHHHhhhhcceeeeccceeeeeeccccc------cchhhcCCc---eeeeeeeecccccccccc---cc
Confidence 99999 8888999999999999999999877765542 122222211 146899999999999888 99
Q ss_pred EEeCcHHHHHHHHhCCC---C-CCCcHHHHHHHHHHHh
Q 043334 841 LVLNHPQLVDAFSSFPG---L-SKPHSTVRYAIKKLLG 874 (903)
Q Consensus 841 lv~~~~~li~~l~~~~~---~-~~~s~~~Q~aa~~~L~ 874 (903)
++++.. +++.+..... . ..+++....++.++++
T Consensus 256 v~~~~~-~i~~l~~~~~~~ifStalpp~~~aa~~~al~ 292 (396)
T d2bwna1 256 IAASAR-MVDAVRSYAPGFIFSTSLPPAIAAGAQASIA 292 (396)
T ss_dssp EEECHH-HHHHHHHHCHHHHTSBCCCHHHHHHHHHHHH
T ss_pred cchhHH-HHHHHHhhcchhhhcccCcHHHHHHHHHHHH
Confidence 999887 9999887654 3 3334444444445553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.58 E-value=6.7e-15 Score=147.28 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=100.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+|+. +.+|+|+|+|++|++.|++|++.+|+ .++++++++|+.+.
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~~~gl---------------~~~v~~~~gda~~~ 94 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQRHGL---------------GDNVTLMEGDAPEA 94 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC---------------CTTEEEEESCHHHH
T ss_pred CCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHHHcCC---------------CcceEEEECchhhc
Confidence 36899999999999999999876 56999999999999999999999987 36899999999887
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..... .||.|+++.+... +..+++.+.++|||||++++
T Consensus 95 ~~~~~-~~D~v~~~~~~~~-----------------------------------------~~~~~~~~~~~LkpgG~lvi 132 (186)
T d1l3ia_ 95 LCKIP-DIDIAVVGGSGGE-----------------------------------------LQEILRIIKDKLKPGGRIIV 132 (186)
T ss_dssp HTTSC-CEEEEEESCCTTC-----------------------------------------HHHHHHHHHHTEEEEEEEEE
T ss_pred ccccC-CcCEEEEeCcccc-----------------------------------------chHHHHHHHHHhCcCCEEEE
Confidence 65543 8999997643320 12678999999999999998
Q ss_pred EeCCCCcHHHHHHHHHHCCCeE
Q 043334 189 NMGGRPGQGVCKRLFERRGFRV 210 (903)
Q Consensus 189 ~~~~~~~~~~l~~ll~~~gf~~ 210 (903)
..........+.+.+++.||..
T Consensus 133 ~~~~~e~~~~~~~~l~~~~~~~ 154 (186)
T d1l3ia_ 133 TAILLETKFEAMECLRDLGFDV 154 (186)
T ss_dssp EECBHHHHHHHHHHHHHTTCCC
T ss_pred EeeccccHHHHHHHHHHcCCCe
Confidence 7765555555667888888753
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.57 E-value=7.8e-15 Score=151.87 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=85.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++..+++ +++.++++|+.++
T Consensus 15 ~~~~rILDiGcGtG~~~~~la~~--~~~v~gvD~S~~~l~~A~~~~~~~~~----------------~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 15 RAEHRVLDIGAGAGHTALAFSPY--VQECIGVDATKEMVEVASSFAQEKGV----------------ENVRFQQGTAESL 76 (234)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHHTC----------------CSEEEEECBTTBC
T ss_pred CCCCEEEEeCCcCcHHHHHHHHh--CCeEEEEeCChhhhhhhhhhhccccc----------------ccccccccccccc
Confidence 36899999999999999999987 47999999999999999999988876 5899999999987
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
+.+. ++||+|+++--....++ ...+++++.++|||||++++
T Consensus 77 ~~~~-~~fD~v~~~~~l~~~~d--------------------------------------~~~~l~~~~r~LkpgG~~~~ 117 (234)
T d1xxla_ 77 PFPD-DSFDIITCRYAAHHFSD--------------------------------------VRKAVREVARVLKQDGRFLL 117 (234)
T ss_dssp CSCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEEE
T ss_pred cccc-cccceeeeeceeecccC--------------------------------------HHHHHHHHHHeeCCCcEEEE
Confidence 6544 48999996422111000 23789999999999999988
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 118 ~ 118 (234)
T d1xxla_ 118 V 118 (234)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.55 E-value=2.8e-14 Score=152.02 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=102.1
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++....|+ .++++++++|+.+
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl---------------~~~v~~~~~d~~~ 128 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGL---------------ADNITVKYGSFLE 128 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTC---------------TTTEEEEECCTTS
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccc---------------ccccccccccccc
Confidence 4578999999999999999999876 67999999999999999999988877 3689999999999
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
++.+. ++||+|+++--+...++ ...+++++.++|||||+++
T Consensus 129 l~~~~-~sfD~V~~~~~l~h~~d--------------------------------------~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 129 IPCED-NSYDFIWSQDAFLHSPD--------------------------------------KLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp CSSCT-TCEEEEEEESCGGGCSC--------------------------------------HHHHHHHHHHHEEEEEEEE
T ss_pred ccccc-cccchhhccchhhhccC--------------------------------------HHHHHHHHHHhcCCCcEEE
Confidence 86543 48999996422211110 2378999999999999999
Q ss_pred EEeC---------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMG---------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~---------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+... .........+++++.||..+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 170 ITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 8321 01123445678889999877663
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.4e-14 Score=149.29 Aligned_cols=105 Identities=19% Similarity=0.181 Sum_probs=85.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|++|||+|||+|.++..+++.. +.+|+|+|+|+.|++.|+++....|+ .++++|.++|+.++
T Consensus 32 ~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~gl---------------~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 32 KPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGV---------------SERVHFIHNDAAGY 95 (245)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTC---------------TTTEEEEESCCTTC
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHhhc---------------cccchhhhhHHhhc
Confidence 358999999999999999999876 57999999999999999999988887 36899999999987
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+ ++||+|++.--....+ ....+++++.++|||||++++
T Consensus 96 ~~~--~~fD~v~~~~~~~~~~--------------------------------------d~~~~l~~~~r~LkPGG~l~i 135 (245)
T d1nkva_ 96 VAN--EKCDVAACVGATWIAG--------------------------------------GFAGAEELLAQSLKPGGIMLI 135 (245)
T ss_dssp CCS--SCEEEEEEESCGGGTS--------------------------------------SSHHHHHHHTTSEEEEEEEEE
T ss_pred ccc--CceeEEEEEehhhccC--------------------------------------CHHHHHHHHHHHcCcCcEEEE
Confidence 533 3899998631111100 023789999999999999998
Q ss_pred E
Q 043334 189 N 189 (903)
Q Consensus 189 ~ 189 (903)
.
T Consensus 136 ~ 136 (245)
T d1nkva_ 136 G 136 (245)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.53 E-value=1e-13 Score=153.23 Aligned_cols=208 Identities=13% Similarity=0.102 Sum_probs=148.5
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHcc---C-CC----CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQ---N-MS----ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKL 688 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y---~-~~----~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~l 688 (903)
.+.|+.+... ++|..+.+++.+.+..+ + .. ....++.+.+++.+++.+|++.+ +|++|+|++++++.+
T Consensus 8 ~~yld~~~~~-~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~---~i~~~~g~t~a~~~~ 83 (381)
T d1elua_ 8 KTYFNFGGQG-ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETFNVDPN---TITITDNVTTGCDIV 83 (381)
T ss_dssp SEECCTTTCC-CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHTTSCGG---GEEEESSHHHHHHHH
T ss_pred CEEeeCCccc-CCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHhCCCcc---cEEEECChHHHhhhc
Confidence 4667766543 46777888887776532 1 11 11234566778888898897655 899999999999999
Q ss_pred HHHh-ccCCCeEEEcCCCcHHHHH----HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccC
Q 043334 689 VLCC-ILEGGTLCFPAGSNGNYVS----AARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLL 763 (903)
Q Consensus 689 l~~l-~~pGD~Vlv~~P~y~~~~~----~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v 763 (903)
+.++ .++||.|+++++.|+.... .++..|++++.+|.+.......+.+.+++.+++++ +++++++|+ ||||.+
T Consensus 84 ~~~l~~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t-~~v~i~~~~-n~tG~~ 161 (381)
T d1elua_ 84 LWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKT-RLVILSHLL-WNTGQV 161 (381)
T ss_dssp HHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTE-EEEEEESBC-TTTCCB
T ss_pred chhhhhcCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccc-ccccccccc-cccccc
Confidence 9887 6899999999999986544 45667999999998653332233577778887776 599999998 999999
Q ss_pred CCHHHHHHHHHHHHh----CCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 764 YSNKEIENILTVCAK----YGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 764 ~s~eel~eI~~ia~k----~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
++ +++|.++|++ +++++++|.+++... .+. . +... +..+++.|+.|.++.| ..+|
T Consensus 162 ~~---~~~I~~l~~~~~~~~~~~~~vD~~~~~g~---~~~---~-------~~~~----~~D~~~~s~~K~~~~p-~G~g 220 (381)
T d1elua_ 162 LP---LAEIMAVCRRHQGNYPVRVLVDGAQSAGS---LPL---D-------FSRL----EVDYYAFTGHKWFAGP-AGVG 220 (381)
T ss_dssp CC---HHHHHHHHHHCCSSSCCEEEEECTTTBTT---BCC---C-------TTTS----CCSEEEEESSSTTCCC-TTCE
T ss_pred ch---hhHHHHHHhhccccccccccccccccccc---ccc---c-------cccc----cccccccccccccccc-chhh
Confidence 99 5566667766 479999999885211 110 0 1111 3578999999998643 4678
Q ss_pred EEEeCcHHHHHHH
Q 043334 840 FLVLNHPQLVDAF 852 (903)
Q Consensus 840 ~lv~~~~~li~~l 852 (903)
++...+. ..+.+
T Consensus 221 ~l~~~~~-~~~~~ 232 (381)
T d1elua_ 221 GLYIHGD-CLGEI 232 (381)
T ss_dssp EEEECTT-TGGGC
T ss_pred HHHhhHH-HHHhc
Confidence 8888776 55443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.52 E-value=4e-14 Score=145.55 Aligned_cols=106 Identities=14% Similarity=0.152 Sum_probs=83.4
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
++.+|||+|||+|..+..+++.. ++.+|+|+|+|+.|++.|++++...+. ..++++..+|+.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~---------------~~~~~~~~~d~~~ 103 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS---------------EIPVEILCNDIRH 103 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC---------------SSCEEEECSCTTT
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc---------------cchhhhccchhhc
Confidence 67899999999999999999864 688999999999999999999876654 2578999999987
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.... ++|+|+++--.. .+. .+....++++++++|||||.++
T Consensus 104 ~~~~---~~d~i~~~~~l~------~~~------------------------------~~d~~~~l~~i~~~LkpgG~li 144 (225)
T d1im8a_ 104 VEIK---NASMVILNFTLQ------FLP------------------------------PEDRIALLTKIYEGLNPNGVLV 144 (225)
T ss_dssp CCCC---SEEEEEEESCGG------GSC------------------------------GGGHHHHHHHHHHHEEEEEEEE
T ss_pred cccc---cceeeEEeeecc------ccC------------------------------hhhHHHHHHHHHHhCCCCceee
Confidence 7533 789988641111 110 0112378999999999999999
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 145 ~~ 146 (225)
T d1im8a_ 145 LS 146 (225)
T ss_dssp EE
T ss_pred cc
Confidence 84
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4e-14 Score=145.37 Aligned_cols=132 Identities=14% Similarity=0.079 Sum_probs=101.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|++++...+. .+++|+++|+.++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~~~~~----------------~~~~f~~~d~~~~ 121 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGK----------------RVRNYFCCGLQDF 121 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGG----------------GEEEEEECCGGGC
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccccccc----------------ccccccccccccc
Confidence 456899999999999999887654 46899999999999999999876665 4789999999998
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ++||+|+++--.. .++ .+....+++++.++|||||.+++
T Consensus 122 ~~~~-~~fD~I~~~~~l~------h~~------------------------------~~~~~~~l~~i~~~Lk~~G~~~i 164 (222)
T d2ex4a1 122 TPEP-DSYDVIWIQWVIG------HLT------------------------------DQHLAEFLRRCKGSLRPNGIIVI 164 (222)
T ss_dssp CCCS-SCEEEEEEESCGG------GSC------------------------------HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccc-ccccccccccccc------cch------------------------------hhhhhhHHHHHHHhcCCcceEEE
Confidence 6543 4999998632111 111 11123789999999999999998
Q ss_pred EeCC--------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 189 NMGG--------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 189 ~~~~--------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.... ......+++++++.||++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 165 KDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp EEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred EEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 4221 1146677899999999988763
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=3.9e-12 Score=142.02 Aligned_cols=235 Identities=14% Similarity=0.100 Sum_probs=167.9
Q ss_pred CCCCCeEEccCCC-CCCCCcHHHHHHHHHHHHccCCCC-------CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 612 TPNSGLIHMDVDQ-SFLPIPSLVKAAIFESFARQNMSE-------SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 612 ~~~~~~IdLs~g~-p~~~~p~~v~~al~~al~~y~~~~-------G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+|...|||+.++ -.+...|.+++++.+++++|+... |..+..+.+++.+++++|.+ ..++++++..
T Consensus 42 ~dG~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e-----~al~~~SG~~ 116 (401)
T d1fc4a_ 42 ADGSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGME-----DAILYSSCFD 116 (401)
T ss_dssp TTSCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCS-----EEEEESCHHH
T ss_pred cCCCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCC-----ceEEecchhh
Confidence 3577889986543 234567899999999998876533 35667778899999988864 3555555566
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHh---hcC--CCcEEEEECCCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTIL---ETV--KKPWVYISGPTIN 758 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l---~~~--~~~~vil~~P~~N 758 (903)
+...++.+++.++|.|++..-.|..+...+...++++..++.. |.+.+++.+ ++. ...+|++.+-. +
T Consensus 117 An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~~~a~~~~~~~~-------d~~~le~~~~~~~~~~~~~~liv~egv~-s 188 (401)
T d1fc4a_ 117 ANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANN-------DMQELEARLKEAREAGARHVLIATDGVF-S 188 (401)
T ss_dssp HHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSEEEEECTT-------CHHHHHHHHHHHHHTTCSSEEEEEESEE-T
T ss_pred hhHHHHHHhcCCCcEEEeCCcchHHHHccccccCceEEEEcCC-------ChHHHHHHHHHhhhcccCceEEEEcCCC-C
Confidence 6666788999999999999999999999999999999888753 455554443 322 22355555554 7
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccccee
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF 838 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi 838 (903)
..|.+.+ +++|.++|++||+++|+||+++...++.... .........+ +..++++||||.+| |...
T Consensus 189 ~~G~~~~---L~~l~~L~~~~~a~LivDeah~~g~~g~~G~------G~~~~~~~~~---~~dii~~tl~Ka~g--g~~G 254 (401)
T d1fc4a_ 189 MDGVIAN---LKGVCDLADKYDALVMVDDSHAVGFVGENGR------GSHEYCDVMG---RVDIITGTLGKALG--GASG 254 (401)
T ss_dssp TTTEECC---HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC------CHHHHTTCTT---CCSEEEEESSSTTC--SSSC
T ss_pred CCCchhh---hhHHHHHHhhcCcEEEehhhhccccccCCCC------ccchhccCCC---CCeEEEeecccccc--cCCc
Confidence 7888887 8888999999999999999999877776542 1222222222 46789999999995 4444
Q ss_pred eEEEeCcHHHHHHHHhCCC----CCCCcHHHHHHHHHHHh
Q 043334 839 GFLVLNHPQLVDAFSSFPG----LSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 839 G~lv~~~~~li~~l~~~~~----~~~~s~~~Q~aa~~~L~ 874 (903)
|++.++.+ +++.+..... ..+.++..-.++...+.
T Consensus 255 g~v~g~~~-~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~ 293 (401)
T d1fc4a_ 255 GYTAARKE-VVEWLRQRSRPYLFSNSLAPAIVAASIKVLE 293 (401)
T ss_dssp EEEEECHH-HHHHHHHHCHHHHHSCCCCHHHHHHHHHHHH
T ss_pred ccccCCHH-HHHHHHcCChhhhhcCCCCHHHHHHHHhhhc
Confidence 88888877 8888875542 44455555555555553
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=3.8e-13 Score=145.52 Aligned_cols=134 Identities=15% Similarity=0.122 Sum_probs=101.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+|++|||+|||+|.+++++|.. +.+|+++|+|+.+++.|++|++.||+ ++++++++|..++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl----------------~~~~~i~~d~~~~~ 206 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGL----------------GNVRVLEANAFDLL 206 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTC----------------TTEEEEESCHHHHH
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCC----------------CCcceeeccHHHHh
Confidence 6789999999999999998864 67999999999999999999999998 47999999997753
Q ss_pred c---CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 R---DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~---~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
. ....+||+|++|||.+....... . .....+..++..+.++|+|||.+
T Consensus 207 ~~~~~~~~~fD~Vi~DpP~~~~~~~~~-~----------------------------~~~~~~~~l~~~a~~lLkpGG~L 257 (318)
T d1wxxa2 207 RRLEKEGERFDLVVLDPPAFAKGKKDV-E----------------------------RAYRAYKEVNLRAIKLLKEGGIL 257 (318)
T ss_dssp HHHHHTTCCEEEEEECCCCSCCSTTSH-H----------------------------HHHHHHHHHHHHHHHTEEEEEEE
T ss_pred hhhHhhhcCCCEEEEcCCccccchHHH-H----------------------------HHHHHHHHHHHHHHHHcCCCCEE
Confidence 2 22348999999999886543221 1 11233568899999999999999
Q ss_pred EEEeCC-CCcHHHH----HHHHHHCCCeE
Q 043334 187 IFNMGG-RPGQGVC----KRLFERRGFRV 210 (903)
Q Consensus 187 l~~~~~-~~~~~~l----~~ll~~~gf~~ 210 (903)
++...+ ......+ .+.+.+.|-..
T Consensus 258 v~~scs~~~~~~~f~~~v~~a~~~a~~~~ 286 (318)
T d1wxxa2 258 ATASCSHHMTEPLFYAMVAEAAQDAHRLL 286 (318)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHcCCCE
Confidence 986554 3333333 33445566443
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.44 E-value=1.7e-13 Score=139.78 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=84.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.|++++...+. ++.++++|+.+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~-----------------~~~~~~~d~~~l~ 97 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRES-----------------NVEFIVGDARKLS 97 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC-----------------CCEEEECCTTSCC
T ss_pred CCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccc-----------------ccccccccccccc
Confidence 5789999999999999999986 78999999999999999998876653 5788999999876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. ++||+|+++- ...+++ ......+++++.++|||||++++.
T Consensus 98 ~~~-~~fD~I~~~~------~l~~~~------------------------------~~d~~~~l~~i~~~LkpgG~lii~ 140 (226)
T d1ve3a1 98 FED-KTFDYVIFID------SIVHFE------------------------------PLELNQVFKEVRRVLKPSGKFIMY 140 (226)
T ss_dssp SCT-TCEEEEEEES------CGGGCC------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccC-cCceEEEEec------chhhCC------------------------------hhHHHHHHHHHHHHcCcCcEEEEE
Confidence 554 4899999631 111111 112347899999999999999987
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
...
T Consensus 141 ~~~ 143 (226)
T d1ve3a1 141 FTD 143 (226)
T ss_dssp EEC
T ss_pred EcC
Confidence 643
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.44 E-value=1.8e-13 Score=142.65 Aligned_cols=127 Identities=14% Similarity=0.155 Sum_probs=101.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|||+|||+|.++..+|+.. +..+|+++|+++++++.|++|+..++. ..++++..+|+.
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~---------------~~nv~~~~~Di~ 147 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---------------IGNVRTSRSDIA 147 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---------------CTTEEEECSCTT
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC---------------CCceEEEEeeee
Confidence 4578999999999999999999875 567999999999999999999987643 368999999998
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
+...+. .||.|+.|.|-- + .+++++.+.|||||++
T Consensus 148 ~~~~~~--~fD~V~ld~p~p--------------~-----------------------------~~l~~~~~~LKpGG~l 182 (250)
T d1yb2a1 148 DFISDQ--MYDAVIADIPDP--------------W-----------------------------NHVQKIASMMKPGSVA 182 (250)
T ss_dssp TCCCSC--CEEEEEECCSCG--------------G-----------------------------GSHHHHHHTEEEEEEE
T ss_pred cccccc--eeeeeeecCCch--------------H-----------------------------HHHHHHHHhcCCCceE
Confidence 875443 899999764311 0 4588999999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
++..+.........+.+++.||...+..
T Consensus 183 v~~~P~i~Qv~~~~~~l~~~gf~~i~~~ 210 (250)
T d1yb2a1 183 TFYLPNFDQSEKTVLSLSASGMHHLETV 210 (250)
T ss_dssp EEEESSHHHHHHHHHHSGGGTEEEEEEE
T ss_pred EEEeCCcChHHHHHHHHHHCCCceeEEE
Confidence 9987764444444566778899766553
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.44 E-value=4e-12 Score=139.85 Aligned_cols=191 Identities=13% Similarity=0.124 Sum_probs=143.4
Q ss_pred cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHH
Q 043334 630 PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGN 708 (903)
Q Consensus 630 p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~ 708 (903)
+++-++++.+.+.+...+.|. ..+.+++.+++++|.+.. |++++| +.|+..++.++ +++||+|++++.+|..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~G~--~v~~~E~~la~~~g~~~a----i~~~sg-t~Al~~al~al~~~~gdeVi~~~~~~~~ 83 (376)
T d1mdoa_ 11 GAEELAAVKTVLDSGWITTGP--KNQELEAAFCRLTGNQYA----VAVSSA-TAGMHIALMALGIGEGDEVITPSMTWVS 83 (376)
T ss_dssp CHHHHHHHHHHHHHTCCSSSH--HHHHHHHHHHHHHCCSEE----EEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCHH
T ss_pred CHHHHHHHHHHHhcCCCcCCH--HHHHHHHHHHHHHCcCeE----EEeCCH-HHHHHHHHHHhCCCCCCEEEEecccccc
Confidence 455667888888775555663 457788889998887533 555545 77888888888 8999999999999999
Q ss_pred HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecC
Q 043334 709 YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTA 788 (903)
Q Consensus 709 ~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~Dea 788 (903)
...++...|++++.++++. +.+.+|++.|++++++++ ++|+++ |..|...+ +++|.++|+++|++||+|.+
T Consensus 84 ~~~ai~~~g~~pv~~d~~~-~~~~~d~~~l~~~i~~~t-kaIi~~----h~~G~~~~---~~~i~~i~~~~~i~vIeD~a 154 (376)
T d1mdoa_ 84 TLNMIVLLGANPVMVDVDR-DTLMVTPEHIEAAITPQT-KAIIPV----HYAGAPAD---LDAIYALGERYGIPVIEDAA 154 (376)
T ss_dssp HHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTE-EEECCB----CGGGCCCC---HHHHHHHHHHHTCCBCEECT
T ss_pred cccchhccccceeeecccc-cccCCCHHHHHHhcCCCC-eEEEEe----CCCCCccc---hhHHHHHHHhcCceEEeccc
Confidence 9999999999999999986 468899999999999887 467654 46688776 77888899999999999999
Q ss_pred CCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 789 FSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 789 Y~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
.+... |.+.. . ... + ..+.|| +|.++ +..-|.++++++++.+.++.+.
T Consensus 155 ~a~g~~~~~~~---------~---g~~----g--~~~~Sf~~~K~l~--~g~GG~i~t~~~~l~~~~~~~~ 205 (376)
T d1mdoa_ 155 HATGTSYKGRH---------I---GAR----G--TAIFSFHAIKNIT--CAEGGIVVTDNPQFADKLRSLK 205 (376)
T ss_dssp TCTTCEETTEE---------T---TSS----S--EEEEECCTTSSSC--SSSCEEEEESCHHHHHHHHHHT
T ss_pred hhccCeeCCee---------c---ccc----c--CccccCCCcCCCC--CCCCCEEEEechhHHHHHHhhc
Confidence 86432 22211 0 111 2 234455 58775 3346899999887877776543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=3e-13 Score=130.65 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=71.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|++|||+|||||.+++.++.+ +..+|+++|+|+++++.+++|+..++++ ++++++++|+..+
T Consensus 13 ~~g~~vlDl~~GtG~~~iea~~r-ga~~v~~ve~~~~a~~~~~~n~~~~~~~---------------~~~~ii~~D~~~~ 76 (152)
T d2esra1 13 FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAE---------------NRFTLLKMEAERA 76 (152)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCG---------------GGEEEECSCHHHH
T ss_pred CCCCeEEEcCCccCHHHHHHHHh-Ccceeeeehhchhhhhhhhhhhhhcccc---------------cchhhhccccccc
Confidence 46899999999999999997775 4569999999999999999999988873 5799999999886
Q ss_pred ccCCCCceeEEEECCCCC
Q 043334 109 CRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~ 126 (903)
.....++||+|+.+|||.
T Consensus 77 l~~~~~~fDiIf~DPPy~ 94 (152)
T d2esra1 77 IDCLTGRFDLVFLDPPYA 94 (152)
T ss_dssp HHHBCSCEEEEEECCSSH
T ss_pred ccccccccceeEechhhc
Confidence 544445899999999995
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.42 E-value=3.4e-13 Score=135.77 Aligned_cols=105 Identities=20% Similarity=0.231 Sum_probs=86.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++++....++ +++++..+|+.+..
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~~~~----------------~~~~~~~~d~~~~~ 91 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAAEGL----------------DNLQTDLVDLNTLT 91 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTC----------------TTEEEEECCTTTCC
T ss_pred CCCcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhhccc----------------cchhhhheeccccc
Confidence 3469999999999999999987 78999999999999999999988776 47999999998876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. +||+|+++..+...+.. ....+++++.++|+|||++++.
T Consensus 92 ~~~--~fD~I~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~L~pgG~~~~~ 133 (198)
T d2i6ga1 92 FDG--EYDFILSTVVMMFLEAQ------------------------------------TIPGLIANMQRCTKPGGYNLIV 133 (198)
T ss_dssp CCC--CEEEEEEESCGGGSCTT------------------------------------HHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccc--cccEEEEeeeeecCCHH------------------------------------HHHHHHHHHHHHcCCCcEEEEE
Confidence 543 89999986554432210 1237899999999999999885
Q ss_pred e
Q 043334 190 M 190 (903)
Q Consensus 190 ~ 190 (903)
.
T Consensus 134 ~ 134 (198)
T d2i6ga1 134 A 134 (198)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.42 E-value=2.1e-12 Score=130.44 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=76.3
Q ss_pred ccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcc
Q 043334 8 FIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIY 87 (903)
Q Consensus 8 fiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~ 87 (903)
++|...+..++.......+ .+|++|||+|||||.+++.++.. +..+|+|+|+|+.+++.|++|+..++.
T Consensus 26 ~Tp~~~a~~~~~~~~~~~d--l~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~-------- 94 (201)
T d1wy7a1 26 RTPGNAASELLWLAYSLGD--IEGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKG-------- 94 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTS--STTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTT--------
T ss_pred CCCHHHHHHHHHHHHhcCC--CCCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCC--------
Confidence 4555555554444444433 67899999999999999997764 456999999999999999999987765
Q ss_pred hhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCC
Q 043334 88 DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 88 ~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~ 128 (903)
+.+++.+|...+. ++||+|++||||...
T Consensus 95 ---------~~~~~~~d~~~~~----~~fD~Vi~nPP~~~~ 122 (201)
T d1wy7a1 95 ---------KFKVFIGDVSEFN----SRVDIVIMNPPFGSQ 122 (201)
T ss_dssp ---------SEEEEESCGGGCC----CCCSEEEECCCCSSS
T ss_pred ---------CceEEECchhhhC----CcCcEEEEcCccccc
Confidence 6899999987762 279999999999743
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.42 E-value=5.3e-13 Score=139.79 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=100.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+.++|||+|||+|.++..+++++|+.+++++|+ +++++.+++++...++ .++++++.+|+.+..
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~---------------~~rv~~~~~D~~~~~ 143 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGL---------------SDRVDVVEGDFFEPL 143 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTC---------------TTTEEEEECCTTSCC
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhc---------------ccchhhccccchhhc
Confidence 457999999999999999999999999999998 6799999999987776 468999999998754
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
+ .+||+|+++-- ++.+ ..+...+++++++++|||||++++.
T Consensus 144 ~---~~~D~v~~~~v-------------lh~~-----------------------~d~~~~~~L~~~~~~LkPGG~l~i~ 184 (253)
T d1tw3a2 144 P---RKADAIILSFV-------------LLNW-----------------------PDHDAVRILTRCAEALEPGGRILIH 184 (253)
T ss_dssp S---SCEEEEEEESC-------------GGGS-----------------------CHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred c---cchhheeeccc-------------cccC-----------------------CchhhHHHHHHHHHhcCCCcEEEEE
Confidence 3 27999985311 1111 1122337899999999999998883
Q ss_pred eCC-------------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 190 MGG-------------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 190 ~~~-------------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
... ....+.++++++++||+++++..
T Consensus 185 e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~ 235 (253)
T d1tw3a2 185 ERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 235 (253)
T ss_dssp ECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred eccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEE
Confidence 221 12355667899999999887743
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.40 E-value=1.3e-12 Score=132.13 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+..|||||||+|..++.+|+..|+..++|+|+++.++..|.+++...++ +|+.++++|+..+..
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l----------------~Nv~~~~~Da~~l~~ 93 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA----------------QNVKLLNIDADTLTD 93 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC----------------SSEEEECCCGGGHHH
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc----------------cCchhcccchhhhhc
Confidence 3479999999999999999999999999999999999999999998887 589999999876531
Q ss_pred -CCCCceeEEEEC--CCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 111 -DHDIQLERIVGC--IPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 111 -~~~~~fD~Iv~N--pPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
-..+++|.|+.+ .||... .+. -+. +. ...+++++.++|||||.|.
T Consensus 94 ~~~~~~~d~v~i~fp~P~~k~--~h~----k~R---------------l~-----------~~~~l~~~~r~LkpgG~l~ 141 (204)
T d2fcaa1 94 VFEPGEVKRVYLNFSDPWPKK--RHE----KRR---------------LT-----------YSHFLKKYEEVMGKGGSIH 141 (204)
T ss_dssp HCCTTSCCEEEEESCCCCCSG--GGG----GGS---------------TT-----------SHHHHHHHHHHHTTSCEEE
T ss_pred ccCchhhhccccccccccchh--hhc----chh---------------hh-----------HHHHHHHHHHhCCCCcEEE
Confidence 123479988654 333210 000 000 00 1268999999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
+.+....-.+...+.+.+.++.....
T Consensus 142 i~TD~~~y~~~~~~~~~~~~~~~~~~ 167 (204)
T d2fcaa1 142 FKTDNRGLFEYSLKSFSEYGLLLTYV 167 (204)
T ss_dssp EEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEECChHHHHHHHHHHHHCCCccccC
Confidence 97654433344456677777664443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=7.3e-13 Score=143.72 Aligned_cols=118 Identities=22% Similarity=0.270 Sum_probs=94.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|+..||++ ++++++++|+.+..
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~---------------~~~~~~~~d~~~~~ 208 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVE---------------DRMKFIVGSAFEEM 208 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCG---------------GGEEEEESCHHHHH
T ss_pred CCCeeecccCcccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCC---------------ccceeeechhhhhh
Confidence 6899999999999999998875 4569999999999999999999999983 58999999998753
Q ss_pred c---CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 R---DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~---~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
. ..+.+||+|++|||+........ ..+...+.+++..+.++|+|||.+
T Consensus 209 ~~~~~~~~~fD~Vi~DpP~~~~~~~~~-----------------------------~~~~~~y~~l~~~a~~ll~pGG~l 259 (324)
T d2as0a2 209 EKLQKKGEKFDIVVLDPPAFVQHEKDL-----------------------------KAGLRAYFNVNFAGLNLVKDGGIL 259 (324)
T ss_dssp HHHHHTTCCEEEEEECCCCSCSSGGGH-----------------------------HHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhccCCCCchhcCCccccCCHHHH-----------------------------HHHHHHHHHHHHHHHHHcCCCcEE
Confidence 2 22348999999999986433211 112334668999999999999998
Q ss_pred EEEeCC
Q 043334 187 IFNMGG 192 (903)
Q Consensus 187 l~~~~~ 192 (903)
++...+
T Consensus 260 v~~s~s 265 (324)
T d2as0a2 260 VTCSCS 265 (324)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 886543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.40 E-value=4.5e-13 Score=142.59 Aligned_cols=120 Identities=17% Similarity=0.158 Sum_probs=91.1
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
.+++.+......+.++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.|++.|+++....+.
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--------------- 77 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--------------- 77 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS---------------
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc---------------
Confidence 33444433222244678999999999999999998876 47999999999999999999876654
Q ss_pred CCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHH
Q 043334 95 LDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 174 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~ 174 (903)
+++|.++|+.++.... +||+|+++--....++ ...+++
T Consensus 78 --~~~f~~~d~~~~~~~~--~fD~v~~~~~l~~~~d--------------------------------------~~~~l~ 115 (281)
T d2gh1a1 78 --DSEFLEGDATEIELND--KYDIAICHAFLLHMTT--------------------------------------PETMLQ 115 (281)
T ss_dssp --EEEEEESCTTTCCCSS--CEEEEEEESCGGGCSS--------------------------------------HHHHHH
T ss_pred --cccccccccccccccC--CceEEEEehhhhcCCC--------------------------------------HHHHHH
Confidence 6999999998875443 7999997532221111 226899
Q ss_pred HHhhcccCCcEEEEEeCC
Q 043334 175 EGIGVIKPSGIMIFNMGG 192 (903)
Q Consensus 175 ~~~~~LkpgG~ll~~~~~ 192 (903)
++.++|||||.+++..+.
T Consensus 116 ~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 116 KMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp HHHHTEEEEEEEEEEECC
T ss_pred HHHHHcCcCcEEEEEECC
Confidence 999999999999886643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=8.7e-13 Score=138.47 Aligned_cols=124 Identities=21% Similarity=0.289 Sum_probs=99.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+|.+|||+|||+|.+++.+|+. ++.+|+|+|+|+.+++.+++|++.|+++ ++++++++|..++.
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~---------------~~v~~~~~D~~~~~ 170 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVE---------------DRMSAYNMDNRDFP 170 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCT---------------TTEEEECSCTTTCC
T ss_pred CccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCC---------------ceEEEEEcchHHhc
Confidence 6899999999999999999986 4579999999999999999999999983 67999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.. +.||.|++|||... . .+++.+.+.|++||.+.+.
T Consensus 171 ~~--~~~D~Ii~~~p~~~-----------~-------------------------------~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 171 GE--NIADRILMGYVVRT-----------H-------------------------------EFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp CC--SCEEEEEECCCSSG-----------G-------------------------------GGHHHHHHHEEEEEEEEEE
T ss_pred cC--CCCCEEEECCCCch-----------H-------------------------------HHHHHHHhhcCCCCEEEEE
Confidence 54 38999999988641 0 3467788899999998652
Q ss_pred eC------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. .....+.++++.+..||.+...
T Consensus 207 ~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 207 NTVPEKLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp EEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred eccccccchhhHHHHHHHHHHHcCCceEEE
Confidence 21 1223455677888899987544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.5e-12 Score=134.03 Aligned_cols=145 Identities=14% Similarity=0.068 Sum_probs=97.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchh-hhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDA-EKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~-~~~~~~~~v~~~~gDl~~~ 108 (903)
++.+|||+|||+|..+..||+. |++|+|+|+|+.||+.|+++....+........... -......+++++++|+.++
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l 122 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL 122 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence 5789999999999999999997 789999999999999999886543210000000000 0011235899999999998
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.....+.||+|+..--++ .+.. +....+++++.++|||||++++
T Consensus 123 ~~~~~~~fd~i~~~~~l~------~~~~------------------------------~~r~~~~~~~~~~LkpgG~~~l 166 (229)
T d2bzga1 123 PRTNIGKFDMIWDRGALV------AINP------------------------------GDRKCYADTMFSLLGKKFQYLL 166 (229)
T ss_dssp GGSCCCCEEEEEESSSTT------TSCG------------------------------GGHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccCceeEEEEEEEEE------eccc------------------------------hhhHHHHHHHHhhcCCcceEEE
Confidence 766666899998421111 1111 1123779999999999999877
Q ss_pred EeCC-----------CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG-----------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~-----------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.... ....+.+++++.. +|.+..+
T Consensus 167 ~~~~~~~~~~~gpp~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 167 CVLSYDPTKHPGPPFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp EEEECCTTTCCCSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred EEcccCCCCCCCCCCCCCHHHHHHHhcC-CCEEEEE
Confidence 4321 1356667777754 5766544
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.39 E-value=8.1e-13 Score=138.49 Aligned_cols=128 Identities=18% Similarity=0.123 Sum_probs=96.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+.+|||+|||+|.++..++... ..+|+|+|+|+.|++.|+++.... ++++++++|+.++.
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~~~------------------~~~~~~~~d~~~~~ 153 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM------------------PVGKFILASMETAT 153 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS------------------SEEEEEESCGGGCC
T ss_pred CCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccccc------------------ccceeEEccccccc
Confidence 56799999999999999988765 458999999999999999876322 36899999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++-.... ++ .+....+++++.++|||||.+++.
T Consensus 154 ~~~-~~fD~I~~~~vl~h------l~------------------------------d~d~~~~l~~~~~~LkpgG~iii~ 196 (254)
T d1xtpa_ 154 LPP-NTYDLIVIQWTAIY------LT------------------------------DADFVKFFKHCQQALTPNGYIFFK 196 (254)
T ss_dssp CCS-SCEEEEEEESCGGG------SC------------------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCC-CccceEEeeccccc------cc------------------------------hhhhHHHHHHHHHhcCCCcEEEEE
Confidence 543 48999996432221 11 111337899999999999999983
Q ss_pred eC--C-------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 190 MG--G-------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 190 ~~--~-------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.. . ......++++++++||++++.
T Consensus 197 e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~~ 235 (254)
T d1xtpa_ 197 ENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred ecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEEE
Confidence 22 1 113556788999999988765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.39 E-value=9.3e-13 Score=135.27 Aligned_cols=122 Identities=16% Similarity=0.102 Sum_probs=93.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|.++..+++. +.+|+|+|+|++|++.|+++. .+++.++++|+.+..
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~--g~~v~giD~s~~~i~~a~~~~--------------------~~~~~~~~~~~~~~~ 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH--FNDITCVEASEEAISHAQGRL--------------------KDGITYIHSRFEDAQ 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT--CSCEEEEESCHHHHHHHHHHS--------------------CSCEEEEESCGGGCC
T ss_pred CCCcEEEEeCCCcHHHHHHHHc--CCeEEEEeCcHHHhhhhhccc--------------------ccccccccccccccc
Confidence 5679999999999999999876 578999999999999998764 246999999998876
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh-hcccCCcEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI-GVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~-~~LkpgG~ll~ 188 (903)
.+ ++||+|+++- . .+|.++ ...++.++. ++|||||.+++
T Consensus 78 ~~--~~fD~I~~~~------v--------leh~~d------------------------~~~~l~~i~~~~Lk~gG~l~i 117 (225)
T d2p7ia1 78 LP--RRYDNIVLTH------V--------LEHIDD------------------------PVALLKRINDDWLAEGGRLFL 117 (225)
T ss_dssp CS--SCEEEEEEES------C--------GGGCSS------------------------HHHHHHHHHHTTEEEEEEEEE
T ss_pred cc--cccccccccc------e--------eEecCC------------------------HHHHHHHHHHHhcCCCceEEE
Confidence 54 3899998631 1 111111 126688887 78999999999
Q ss_pred EeCC--------------------------------CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG--------------------------------RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~--------------------------------~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.++. .+....+++++++.||+++..
T Consensus 118 ~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 118 VCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp EEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 6532 223556788899999988765
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.2e-12 Score=137.91 Aligned_cols=126 Identities=13% Similarity=0.188 Sum_probs=102.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+|.+|||+|||+|.++..+|+.. ++.+|+++|+++++++.|++|+...++ .+++.+..+|+..
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~---------------~~~v~~~~~d~~~ 166 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL---------------IERVTIKVRDISE 166 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC---------------GGGEEEECCCGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc---------------ccCcEEEeccccc
Confidence 478999999999999999999886 567999999999999999999998876 3589999999866
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..... .||.|+.+.|-. ..+++++.++|||||+++
T Consensus 167 ~~~~~--~~D~V~~d~p~p-------------------------------------------~~~l~~~~~~LKpGG~lv 201 (266)
T d1o54a_ 167 GFDEK--DVDALFLDVPDP-------------------------------------------WNYIDKCWEALKGGGRFA 201 (266)
T ss_dssp CCSCC--SEEEEEECCSCG-------------------------------------------GGTHHHHHHHEEEEEEEE
T ss_pred ccccc--ceeeeEecCCCH-------------------------------------------HHHHHHHHhhcCCCCEEE
Confidence 54433 799998542211 046899999999999999
Q ss_pred EEeCCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMGGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+..+.......+.+.+++.||...+.+
T Consensus 202 ~~~P~~~Qv~~~~~~l~~~gF~~i~~~ 228 (266)
T d1o54a_ 202 TVCPTTNQVQETLKKLQELPFIRIEVW 228 (266)
T ss_dssp EEESSHHHHHHHHHHHHHSSEEEEEEE
T ss_pred EEeCcccHHHHHHHHHHHCCceeEEEE
Confidence 988765555555678889999877764
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.38 E-value=1.1e-12 Score=140.03 Aligned_cols=132 Identities=13% Similarity=0.109 Sum_probs=96.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||++||||.++++++.. +++|++||.|+.+++.|++|+..|+++ ..+++|+++|+.++.
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~--------------~~~~~~i~~D~~~~l 195 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLE--------------QAPIRWICEDAMKFI 195 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCT--------------TSCEEEECSCHHHHH
T ss_pred CCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhccc--------------CCcEEEEeCCHHHhH
Confidence 5789999999999999998865 679999999999999999999999984 236999999998874
Q ss_pred cC---CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RD---HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~---~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.. .+.+||+||+|||.+......... .+ .+.+..+++.+.++|+|||.+
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~~~~~~~~-~~---------------------------~~~~~~l~~~~~~ll~~~g~~ 247 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGRGTHGEVW-QL---------------------------FDHLPLMLDICREILSPKALG 247 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEECTTCCEE-EH---------------------------HHHHHHHHHHHHHTBCTTCCE
T ss_pred HHHhhcCCCCCEEEECCCcccccccchhH-HH---------------------------HHHHHHHHHHHHHhcCCCCCE
Confidence 32 124899999999987544322111 00 122346788899999999875
Q ss_pred EEE-eC-CCCcHHHHHHHHHH
Q 043334 187 IFN-MG-GRPGQGVCKRLFER 205 (903)
Q Consensus 187 l~~-~~-~~~~~~~l~~ll~~ 205 (903)
++. .. .......+.+++.+
T Consensus 248 ll~t~~s~~~s~~~~~~~~~~ 268 (309)
T d2igta1 248 LVLTAYSIRASFYSMHELMRE 268 (309)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHH
Confidence 553 32 33444444445443
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.38 E-value=1.1e-11 Score=136.64 Aligned_cols=187 Identities=12% Similarity=0.082 Sum_probs=141.7
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH----HcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR----FLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~----~~G~~vv~v~~~ 726 (903)
.+-++++++.+++..|.+ ..++++.+++++..++.+++++||+|++++..|++....++ ..|+++..++.
T Consensus 58 nPT~~~LE~~la~LEg~~-----~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi~~~~~d~- 131 (392)
T d1gc0a_ 58 NPTLNLLEARMASLEGGE-----AGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDM- 131 (392)
T ss_dssp CHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECT-
T ss_pred ChHHHHHHHHHHHHhCCc-----ceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCcccccCCc-
Confidence 356888999999887743 46677888899999999999999999999999999877764 45999998875
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|++.+++++++++ ++|++-+|+ |||..+.+ +++|+++|+++|+++|+|+.|+.-.+.. +
T Consensus 132 ------~d~~~~~~ai~~~t-~lv~~Esp~-NP~l~v~D---i~~i~~ia~~~g~~~vvDnT~atP~~~~---------P 191 (392)
T d1gc0a_ 132 ------ADLQALEAAMTPAT-RVIYFESPA-NPNMHMAD---IAGVAKIARKHGATVVVDNTYCTPYLQR---------P 191 (392)
T ss_dssp ------TCHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHGGGTCEEEEECTTTHHHHCC---------G
T ss_pred ------cCHHHHHHhCCCCC-eEEEecccc-cceeeecc---hHHHHHHHHhcCCEEEEecCccCccccC---------h
Confidence 36899999999888 599999999 99999998 9999999999999999999995211110 1
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccce-eeEEEeCcHHHHHHHH--hCC--CCCCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALK-FGFLVLNHPQLVDAFS--SFP--GLSKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR-iG~lv~~~~~li~~l~--~~~--~~~~~s~~~Q~aa~~~L 873 (903)
+. . +-.|++.|.+|.++..|-- .|.++++++ .++.++ ... .-..+++...+.+..-|
T Consensus 192 -l~----~----GaDivihS~TKyi~Ghsd~~~G~v~~~~~-~~~~~r~~~~~~~~G~~~~p~da~ll~rgl 253 (392)
T d1gc0a_ 192 -LE----L----GADLVVHSATKYLSGHGDITAGIVVGSQA-LVDRIRLQGLKDMTGAVLSPHDAALLMRGI 253 (392)
T ss_dssp -GG----G----TCSEEEEETTTTTTCSSSCCCEEEEECHH-HHHHHHHTHHHHHTCCCCCHHHHHHHHHHH
T ss_pred -HH----h----CCCEEEEecceeecCCcccccccccchhH-HHHHHHHHHHHHccCCcCChhhHHHHHhcc
Confidence 11 1 3579999999999754544 456666665 665443 222 13445566666555555
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.37 E-value=1.6e-12 Score=130.44 Aligned_cols=72 Identities=22% Similarity=0.247 Sum_probs=62.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.+|++|||+|||||.+++.++.. +..+|+|+|+|+.+++.|++|+ .+++++++|+.+.
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~-ga~~V~~vDid~~a~~~ar~N~---------------------~~~~~~~~D~~~l 104 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---------------------GGVNFMVADVSEI 104 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCGGGC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCCcccccccCHHHHHHHHHcc---------------------ccccEEEEehhhc
Confidence 57899999999999999987765 4568999999999999999986 3688999999875
Q ss_pred ccCCCCceeEEEECCCCC
Q 043334 109 CRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~ 126 (903)
. ++||+|++||||.
T Consensus 105 ~----~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 105 S----GKYDTWIMNPPFG 118 (197)
T ss_dssp C----CCEEEEEECCCC-
T ss_pred C----CcceEEEeCcccc
Confidence 3 3899999999995
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.36 E-value=1.7e-12 Score=135.54 Aligned_cols=113 Identities=18% Similarity=0.180 Sum_probs=86.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++++|||+|||+|..+..+++. +..+|+|+|+|++|++.|++++...+. ..++.+.++|+....
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~---------------~~~v~f~~~D~~~~~ 87 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKR---------------RFKVFFRAQDSYGRH 87 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCC---------------SSEEEEEESCTTTSC
T ss_pred CcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCC---------------CcceEEEEcchhhhc
Confidence 6789999999999999998876 345899999999999999998876554 257999999997665
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....++||+|+++-- .+++. ...+.+..+++++.++|||||++++.
T Consensus 88 ~~~~~~fD~V~~~~~------l~~~~----------------------------~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 88 MDLGKEFDVISSQFS------FHYAF----------------------------STSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp CCCSSCEEEEEEESC------GGGGG----------------------------SSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ccccccceEEEEcce------eeecC----------------------------CCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 444458999986411 11110 11123457899999999999999987
Q ss_pred eCC
Q 043334 190 MGG 192 (903)
Q Consensus 190 ~~~ 192 (903)
+..
T Consensus 134 ~~~ 136 (252)
T d1ri5a_ 134 VPS 136 (252)
T ss_dssp EEC
T ss_pred ecC
Confidence 654
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.35 E-value=4.8e-11 Score=131.61 Aligned_cols=189 Identities=13% Similarity=0.081 Sum_probs=141.3
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~ 725 (903)
..+-++++++.++...|.+ .-++++++++++..++.+++++||+|++++..|......+ ...|.++..++.
T Consensus 61 ~nPT~~~LE~~la~LEgg~-----~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~~~~vd~ 135 (397)
T d1y4ia1 61 GNPTTDALEKKLAVLERGE-----AGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDA 135 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECT
T ss_pred CCHHHHHHHHHHHHHhCCc-----cceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceEeeccCC
Confidence 3456888999999987754 3566677788999999999999999999999998876654 567999999875
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
-|++.+++++++++ ++|++-+|. |||..+.+ +++|+++|+++|+++|+|+.|+.-.+..
T Consensus 136 -------~d~~~~~~~i~~~T-klv~~Esp~-NP~l~v~D---i~~i~~iA~~~gi~~vvDnT~atP~~~~--------- 194 (397)
T d1y4ia1 136 -------GKPEEIRAAMRPET-KVVYIETPA-NPTLSLVD---IETVAGIAHQQGALLVVDNTFMSPYCQQ--------- 194 (397)
T ss_dssp -------TSHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---------
T ss_pred -------CCHHHHHHhcCCCC-cEEEecCCc-ccceeecc---cHHHHHHhhcCCceEEecCcccCcccCc---------
Confidence 36899999999888 599999999 99999988 8899999999999999999985321111
Q ss_pred hhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH--hCC--CCCCCcHHHHHHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS--SFP--GLSKPHSTVRYAIKKLL 873 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~--~~~--~~~~~s~~~Q~aa~~~L 873 (903)
+ +. . +-.|+++|++|.++..|--+|-+++.+.+.+...+ ..+ .-..+++...+.+..-|
T Consensus 195 P-l~----~----GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl 257 (397)
T d1y4ia1 195 P-LQ----L----GADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGV 257 (397)
T ss_dssp G-GG----G----TCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHH
T ss_pred c-hh----c----CCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCc
Confidence 1 11 1 35799999999998766666654444433655432 222 13345566666555555
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=9.8e-13 Score=129.49 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=69.0
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccC
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLL 95 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~ 95 (903)
.++..|... ..++.+|||+|||+|.+++.++.+ +++|+++|+|+.+++.+++|++.++++
T Consensus 30 ~lf~~l~~~---~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~--------------- 89 (171)
T d1ws6a1 30 ALFDYLRLR---YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLG--------------- 89 (171)
T ss_dssp HHHHHHHHH---CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCC---------------
T ss_pred HHHHHhhcc---ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccc---------------
Confidence 444454432 236889999999999999998776 679999999999999999999998872
Q ss_pred CcEEEEEcccccc-ccCCCCceeEEEECCCCCC
Q 043334 96 DRVEFHESDLLAY-CRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 96 ~~v~~~~gDl~~~-~~~~~~~fD~Iv~NpPy~~ 127 (903)
.++....+|.... ......+||+|++||||..
T Consensus 90 ~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~ 122 (171)
T d1ws6a1 90 ARVVALPVEVFLPEAKAQGERFTVAFMAPPYAM 122 (171)
T ss_dssp CEEECSCHHHHHHHHHHTTCCEEEEEECCCTTS
T ss_pred cceeeeehhcccccccccCCccceeEEcccccc
Confidence 4555555554322 1122238999999999964
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.7e-12 Score=131.26 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=88.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..++ +++|+|+|+.|++.|+++ ++.++++|+.+++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-----------------------~~~~~~~d~~~l~ 86 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-----------------------GVFVLKGTAENLP 86 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-----------------------TCEEEECBTTBCC
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-----------------------ccccccccccccc
Confidence 35689999999999877653 579999999999999853 4789999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++--.. +.++ ...+++++.++|+|||.+++.
T Consensus 87 ~~~-~~fD~I~~~~~l~--------------h~~d------------------------~~~~l~~~~~~L~pgG~l~i~ 127 (208)
T d1vlma_ 87 LKD-ESFDFALMVTTIC--------------FVDD------------------------PERALKEAYRILKKGGYLIVG 127 (208)
T ss_dssp SCT-TCEEEEEEESCGG--------------GSSC------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-ccccccccccccc--------------cccc------------------------cccchhhhhhcCCCCceEEEE
Confidence 544 4899999641111 1000 237899999999999999984
Q ss_pred eCC-----------------------CCcHHHHHHHHHHCCCeEEEEEe
Q 043334 190 MGG-----------------------RPGQGVCKRLFERRGFRVDKLWQ 215 (903)
Q Consensus 190 ~~~-----------------------~~~~~~l~~ll~~~gf~~~~~~~ 215 (903)
... ......+.+++++.||+.+++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 128 IVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp EECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 321 12456778899999999887754
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.34 E-value=3.6e-12 Score=137.43 Aligned_cols=140 Identities=16% Similarity=0.192 Sum_probs=101.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+|++|||++||+|.+++.++. .+..+|+++|+|+.+++.|++|+..|+++ ..+++++++|+.++.
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~-~ga~~V~~vD~s~~a~~~a~~N~~~n~l~--------------~~~~~~i~~d~~~~l 208 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAM-GGAMATTSVDLAKRSRALSLAHFEANHLD--------------MANHQLVVMDVFDYF 208 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHH-TTBSEEEEEESCTTHHHHHHHHHHHTTCC--------------CTTEEEEESCHHHHH
T ss_pred CCCceeecCCCCcHHHHHHHh-CCCceEEEecCCHHHHHHHHHHHHHhccc--------------CcceEEEEccHHHHH
Confidence 689999999999999998775 34568999999999999999999999984 257999999998764
Q ss_pred c---CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 R---DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~---~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
. ..+.+||+||.+||.+...... . ......+.++++.+.++|+|||.+
T Consensus 209 ~~~~~~~~~fD~Ii~DPP~f~~~~~~-~----------------------------~~~~~~~~~L~~~a~~ll~pgG~l 259 (317)
T d2b78a2 209 KYARRHHLTYDIIIIDPPSFARNKKE-V----------------------------FSVSKDYHKLIRQGLEILSENGLI 259 (317)
T ss_dssp HHHHHTTCCEEEEEECCCCC-----C-C----------------------------CCHHHHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhhcCCCCEEEEcChhhccchhH-H----------------------------HHHHHHHHHHHHHHHHHcCCCCEE
Confidence 3 2334899999999977432211 1 112234668999999999999999
Q ss_pred EEEeCC-CCcHHHHH----HHHHHCCCeEEEE
Q 043334 187 IFNMGG-RPGQGVCK----RLFERRGFRVDKL 213 (903)
Q Consensus 187 l~~~~~-~~~~~~l~----~ll~~~gf~~~~~ 213 (903)
++...+ ....+.+. +.+.+.+......
T Consensus 260 ~~~scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 260 IASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEeCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 996654 33444333 3344455554433
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.34 E-value=8.9e-12 Score=125.91 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=99.0
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
..|||||||+|..++.+|+..|...++|+|+++.++..|.+++..+++ +|+.++.+|+..+...
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l----------------~Ni~~~~~da~~l~~~ 96 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV----------------PNIKLLWVDGSDLTDY 96 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC----------------SSEEEEECCSSCGGGT
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc----------------ccceeeecCHHHHhhh
Confidence 479999999999999999999999999999999999999999988887 5899999998775421
Q ss_pred -CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEe
Q 043334 112 -HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNM 190 (903)
Q Consensus 112 -~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~ 190 (903)
...++|.|+.|-|.--....+. -++. + ...+++.+.++|||||.+.+.+
T Consensus 97 ~~~~~~~~i~i~fPdPw~K~~h~----krRl--------------~------------~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 97 FEDGEIDRLYLNFSDPWPKKRHE----KRRL--------------T------------YKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp SCTTCCSEEEEESCCCCCSGGGG----GGST--------------T------------SHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCceehhcccccccccchhhh----hhhh--------------h------------HHHHHHHHHHhCCCCcEEEEEE
Confidence 2348999976533221111000 0000 0 1278999999999999999976
Q ss_pred CCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 191 GGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 191 ~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
....-.....+.+...++.....+
T Consensus 147 D~~~Y~~~~le~~~~~~~~~~~~~ 170 (204)
T d1yzha1 147 DNRGLFEYSLVSFSQYGMKLNGVW 170 (204)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCccHHHHHHHHHHHCCccccccc
Confidence 543323333456667777665554
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=2.8e-11 Score=133.19 Aligned_cols=189 Identities=10% Similarity=0.051 Sum_probs=139.9
Q ss_pred CCcHHHHHHHHHHHHccCC-CCC-------chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHH----hccC
Q 043334 628 PIPSLVKAAIFESFARQNM-SES-------EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLC----CILE 695 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~-~~G-------~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~----l~~p 695 (903)
++|+.+.+++.+.+.+... +.+ ..+..+..++.+++.+|++.+ +|++++|+++++..++.+ ...+
T Consensus 12 ~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~~~~~~---~i~~~~~~T~~l~~~~~~~~~~~~~~ 88 (376)
T d1eg5a_ 12 RVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS---EIFFTSCATESINWILKTVAETFEKR 88 (376)
T ss_dssp CCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTSCGG---GEEEESCHHHHHHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHcCCCCC---cEEEECCHHHHHHhhhhccccccccc
Confidence 5678899999888765321 112 122334556778888898655 899999999999988754 4578
Q ss_pred CCeEEEcCCCcHHHHHHH---HHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHH
Q 043334 696 GGTLCFPAGSNGNYVSAA---RFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENI 772 (903)
Q Consensus 696 GD~Vlv~~P~y~~~~~~~---~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI 772 (903)
|+.|++....|+.+.... +..|++++.+|++. ++.+|++++++++++++ ++|++++++ |+||...+.+++.++
T Consensus 89 g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~--~~~id~~~l~~~i~~~t-~lv~is~v~-~~tG~~~~~~~i~~~ 164 (376)
T d1eg5a_ 89 KRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDS--RGVVKLEELEKLVDEDT-FLVSIMAAN-NEVGTIQPVEDVTRI 164 (376)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCT--TSCBCHHHHHHHCCTTE-EEEEEESBC-TTTCBBCCHHHHHHH
T ss_pred CcccccccccchhhHHHHHHHHhcCCEEEEEcCCC--CCeECHHHHHHhcCCCc-eEEEEECCc-cccceeeeehhhhhh
Confidence 899999999988877665 45599999999975 45699999999999888 599999998 999999996666555
Q ss_pred HHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 773 LTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 773 ~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
+.. ...++++++|.+++.-.. + . .+... +..++++|++|.+|.+|..++|+
T Consensus 165 ~~~-~~~~~~~~vD~~q~~g~~---~---~-------d~~~~----~~D~~~~s~~K~~gp~G~~~l~~ 215 (376)
T d1eg5a_ 165 VKK-KNKETLVHVDAVQTIGKI---P---F-------SLEKL----EVDYASFSAHKFHGPKGVGITYI 215 (376)
T ss_dssp HHH-HCTTCEEEEECTTTTTTS---C---C-------CCTTT----CCSEEEEEGGGGTSCTTCEEEEE
T ss_pred hhh-cccCceeEEEeeeccccc---c---c-------ccccc----CccceecccceeecCCCceeEEe
Confidence 443 445899999988742111 1 0 01121 35789999999999888766664
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.33 E-value=1e-12 Score=130.68 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=88.7
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 15 FTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 15 ~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
..++..|.. .++.+|||+|||+|..++.||++ |.+|+|+|+|+.|++.|++++...+..... .......
T Consensus 10 ~~~~~~l~~-----~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~----~~~~~~~ 78 (201)
T d1pjza_ 10 QQYWSSLNV-----VPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQ----GDFKVYA 78 (201)
T ss_dssp HHHHHHHCC-----CTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEE----TTEEEEE
T ss_pred HHHHHHcCC-----CCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhh----hhhhhcc
Confidence 345555542 36799999999999999999998 899999999999999999988544321000 0000111
Q ss_pred CCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHH
Q 043334 95 LDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 174 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~ 174 (903)
...++++++|+.++.......||+|++.--+. .+ ..+....+++
T Consensus 79 ~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~------~l------------------------------~~~~~~~~~~ 122 (201)
T d1pjza_ 79 APGIEIWCGDFFALTARDIGHCAAFYDRAAMI------AL------------------------------PADMRERYVQ 122 (201)
T ss_dssp CSSSEEEEECCSSSTHHHHHSEEEEEEESCGG------GS------------------------------CHHHHHHHHH
T ss_pred ccccceecccccccccccccceeEEEEEeeeE------ec------------------------------chhhhHHHHH
Confidence 24578999999887654444799998521111 11 1122347899
Q ss_pred HHhhcccCCcEEEEEe
Q 043334 175 EGIGVIKPSGIMIFNM 190 (903)
Q Consensus 175 ~~~~~LkpgG~ll~~~ 190 (903)
.++++|||||.+++..
T Consensus 123 ~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 123 HLEALMPQACSGLLIT 138 (201)
T ss_dssp HHHHHSCSEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEE
Confidence 9999999999987743
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=6e-12 Score=133.54 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=84.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++++..++ ..++.+...|..+
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l---------------~~~~~~~~~d~~~ 113 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDT---------------NRSRQVLLQGWED 113 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCC---------------SSCEEEEESCGGG
T ss_pred CCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhcc---------------ccchhhhhhhhhh
Confidence 4678999999999999999999887 57999999999999999999988876 3578888888776
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+. ++||.|++. . + .++ .+...+..+|+++.++|||||+++
T Consensus 114 ~~----~~fD~i~si---------~-~----~eh----------------------~~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 114 FA----EPVDRIVSI---------E-A----FEH----------------------FGHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp CC----CCCSEEEEE---------S-C----GGG----------------------TCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred hc----cchhhhhHh---------h-H----HHH----------------------hhhhhHHHHHHHHHhccCCCceEE
Confidence 52 289999851 0 1 111 111224588999999999999999
Q ss_pred EEe
Q 043334 188 FNM 190 (903)
Q Consensus 188 ~~~ 190 (903)
+..
T Consensus 154 i~~ 156 (280)
T d2fk8a1 154 VQS 156 (280)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.32 E-value=5e-12 Score=132.50 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=100.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++|||+|||+|.++..+++++|+.+++++|+ |++++.|++++...++ .+++.+..+|+.+..
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~---------------~~ri~~~~~d~~~~~ 144 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGL---------------ADRVTVAEGDFFKPL 144 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTC---------------TTTEEEEECCTTSCC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCC---------------cceeeeeeeeccccc
Confidence 457899999999999999999999999999998 8899999999987776 368999999998754
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
+ . +||+|+++- ..+.+. .+....+++++++.|||||++++.
T Consensus 145 p-~--~~D~v~~~~-------------vLh~~~-----------------------d~~~~~lL~~i~~~LkpgG~llI~ 185 (256)
T d1qzza2 145 P-V--TADVVLLSF-------------VLLNWS-----------------------DEDALTILRGCVRALEPGGRLLVL 185 (256)
T ss_dssp S-C--CEEEEEEES-------------CGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c-c--cchhhhccc-------------cccccC-----------------------cHHHHHHHHHHHhhcCCcceeEEE
Confidence 3 2 699998421 111111 122337899999999999998873
Q ss_pred eCC--------------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MGG--------------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~~--------------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
... ......++++++++||+.++..
T Consensus 186 d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~ 236 (256)
T d1qzza2 186 DRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASER 236 (256)
T ss_dssp ECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred EeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEE
Confidence 221 1134567889999999988874
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.32 E-value=1.4e-12 Score=134.59 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=76.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++. . ..++++|+.+++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----~------------------~~~~~~~~~~l~ 97 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----V------------------KNVVEAKAEDLP 97 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----C------------------SCEEECCTTSCC
T ss_pred CCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----c------------------cccccccccccc
Confidence 5789999999999999999986 689999999999999999764 1 235678888875
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.+. ++||+|++.- .+.+|.++ ...+++++.++|||||.+++.
T Consensus 98 ~~~-~~fD~ii~~~-------------~~~~~~~d------------------------~~~~l~~i~r~Lk~gG~~ii~ 139 (246)
T d2avna1 98 FPS-GAFEAVLALG-------------DVLSYVEN------------------------KDKAFSEIRRVLVPDGLLIAT 139 (246)
T ss_dssp SCT-TCEEEEEECS-------------SHHHHCSC------------------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred ccc-ccccceeeec-------------chhhhhhh------------------------HHHHHHHHHhhcCcCcEEEEE
Confidence 443 4899998521 01111111 236899999999999999997
Q ss_pred eC
Q 043334 190 MG 191 (903)
Q Consensus 190 ~~ 191 (903)
..
T Consensus 140 ~~ 141 (246)
T d2avna1 140 VD 141 (246)
T ss_dssp EE
T ss_pred EC
Confidence 64
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=1.7e-11 Score=130.49 Aligned_cols=113 Identities=16% Similarity=0.196 Sum_probs=87.2
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||||||.|.+++.+|+.+ +.+|+|+++|++.++.|++++...++ ..++.+...|...
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l---------------~~~v~~~~~d~~~ 122 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDS---------------PRRKEVRIQGWEE 122 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCC---------------SSCEEEEECCGGG
T ss_pred CCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhcc---------------chhhhhhhhcccc
Confidence 4679999999999999999999887 57999999999999999999988877 3689999988754
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
. +++||.|+|. . + .+|..+. ....+...+..+++++.++|||||+++
T Consensus 123 ~----~~~fD~i~si---------e-~----~eH~~~~---------------~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 123 F----DEPVDRIVSL---------G-A----FEHFADG---------------AGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp C----CCCCSEEEEE---------S-C----GGGTTCC---------------SSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred c----ccccceEeec---------h-h----HHhcchh---------------hhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 3 2389999852 0 0 1110000 011234557799999999999999999
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 170 l~ 171 (291)
T d1kpia_ 170 LH 171 (291)
T ss_dssp EE
T ss_pred EE
Confidence 84
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.32 E-value=5.9e-12 Score=127.88 Aligned_cols=129 Identities=14% Similarity=0.081 Sum_probs=93.6
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||+|||+|..+..+++..|..+|+|+|+|+.|++.|++++... +++.++.+|...
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~------------------~ni~~i~~d~~~ 115 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER------------------NNIIPLLFDASK 115 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC------------------SSEEEECSCTTC
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc------------------CCceEEEeeccC
Confidence 56789999999999999999999988889999999999999999988654 379999999887
Q ss_pred cccCCC--CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YCRDHD--IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~~~~~--~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
...... ..+|+|+.+.++.. ....++++++++|||||.
T Consensus 116 ~~~~~~~~~~vd~v~~~~~~~~----------------------------------------~~~~~l~~~~~~LkpgG~ 155 (209)
T d1nt2a_ 116 PWKYSGIVEKVDLIYQDIAQKN----------------------------------------QIEILKANAEFFLKEKGE 155 (209)
T ss_dssp GGGTTTTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEEE
T ss_pred ccccccccceEEEEEecccChh----------------------------------------hHHHHHHHHHHHhccCCe
Confidence 644322 25777765433220 022679999999999999
Q ss_pred EEEEe-----CCC-CcHHHHHHHH--HHCCCeEEEEE
Q 043334 186 MIFNM-----GGR-PGQGVCKRLF--ERRGFRVDKLW 214 (903)
Q Consensus 186 ll~~~-----~~~-~~~~~l~~ll--~~~gf~~~~~~ 214 (903)
+++.. ... ......+... .+.||++.+..
T Consensus 156 l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E~i 192 (209)
T d1nt2a_ 156 VVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVKHG 192 (209)
T ss_dssp EEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred EEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 98843 121 2222222221 24689987763
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.32 E-value=4.7e-11 Score=131.27 Aligned_cols=188 Identities=11% Similarity=0.060 Sum_probs=139.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH----cCCEEEEecC
Q 043334 650 EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF----LKANIVNIPT 725 (903)
Q Consensus 650 ~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~----~G~~vv~v~~ 725 (903)
..+-++++++.++...|.+ ..++++.+++++.. +..++++||+|++..+.|......++. .|.++..++.
T Consensus 47 ~nPt~~~le~~la~LE~~~-----~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~ 120 (380)
T d1ibja_ 47 GNPTRDALESLLAKLDKAD-----RAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT 120 (380)
T ss_dssp CCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred CChHHHHHHHHHHHHcCCc-----eEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccccccccCc
Confidence 3455788999999887753 34455555788875 667899999999999999998877744 5888888765
Q ss_pred CCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 726 ESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 726 ~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
.+.+.+++++++++ ++|++.+|+ |||..+.+ +++|.++|+++|+++|+|+.|+.-.+..
T Consensus 121 -------~~~~~~~~ai~~~t-~li~~Etps-NP~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP~~~~--------- 179 (380)
T d1ibja_ 121 -------TKLDEVAAAIGPQT-KLVWLESPT-NPRQQISD---IRKISEMAHAQGALVLVDNSIMSPVLSR--------- 179 (380)
T ss_dssp -------TSHHHHHHHCCSSE-EEEEECSSC-TTTCCCCC---HHHHHHHHHTTTCEEEEECTTTCTTTCC---------
T ss_pred -------chHHHHHHHhccCc-cEEEecccc-cccccccc---HHHHHHHHHHcCCeEEeecccccccccc---------
Confidence 36889999998887 599999999 99999998 8889999999999999999995321111
Q ss_pred hhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +. . +-.|+++|++|.++..|--+ |.++++++.+.+.+..... -..+++...+.+..-|
T Consensus 180 P-l~----~----GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl 241 (380)
T d1ibja_ 180 P-LE----L----GADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGI 241 (380)
T ss_dssp G-GG----T----TCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred c-cc----c----CCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcc
Confidence 1 11 1 35799999999998666655 4666676657776665543 3345555555555555
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.32 E-value=4.2e-11 Score=135.71 Aligned_cols=222 Identities=14% Similarity=0.124 Sum_probs=149.7
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~ 694 (903)
.-.|||-......++.+...++ ...+...+|..+-...+++.+++.+|.+. .+.++.++.+...++.++++
T Consensus 42 ~v~iDl~sDs~t~am~~~~~aa----~~~GDd~Y~~dpt~~~lE~~~a~l~G~e~-----al~~~SGt~An~~a~~~l~~ 112 (456)
T d1c7ga_ 42 DIYIDLLTDSGTNAMSDKQWAG----MMIGDEAYAGSENFYHLEKTVKELFGFKH-----IVPTHQGRGAENLLSQLAIK 112 (456)
T ss_dssp GCSEECSCSSSCCCEEHHHHHH----TTSCCCCSSSCHHHHHHHHHHHHHHCCSE-----EEEESSHHHHHHHHHHHHCC
T ss_pred ceeeEcccCCCcccchHHHHHH----HhccchhccCCchHHHHHHHHHHHhCCCe-----EEECCCHHHHHHHHHHHhcC
Confidence 3478886655544445444332 22334456656666778888888899864 45555556667778999999
Q ss_pred CCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC--------CCCcccCHHHHHHHhhcCCC---cEEEEECCCCCCc-cc
Q 043334 695 EGGTLCFPAGSNGNYVSAARFLKANIVNIPTES--------EVGFKMTEKTLVTILETVKK---PWVYISGPTINPT-GL 762 (903)
Q Consensus 695 pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~--------~~~f~ld~~~L~~~l~~~~~---~~vil~~P~~NPT-G~ 762 (903)
|||.|+.... +..+...+...|+.++.+..+. ...+++|+++|++.+++.++ +++++.+|+ |+. |.
T Consensus 113 ~Gd~Vi~~~~-f~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~-n~~gG~ 190 (456)
T d1c7ga_ 113 PGQYVAGNMY-FTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTV-NLAGGQ 190 (456)
T ss_dssp TTEEEEESSC-CHHHHHHHHHTTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSB-TTTTSB
T ss_pred CCCeEecCcc-hHHHHHHHHHcCceeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecc-cccccc
Confidence 9999887665 5556666788899988776532 12457899999999986542 488899998 886 68
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCC--cc---CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGL--EF---NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l--~f---~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
+++.+++++|.++|++||+.+++|.+...- .| ........++......+-.. ..++..|++|.++.++
T Consensus 191 ~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~-----ad~~s~s~~K~~~~~~-- 263 (456)
T d1c7ga_ 191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSY-----ADGCTMSGKKDCLVNI-- 263 (456)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTT-----CSEEEEETTTTTCCSS--
T ss_pred eecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhcccccccCCCChhhhccccccc-----cccEEEeccccccccc--
Confidence 889999999999999999999999987310 01 01111111222222222222 2356679999997553
Q ss_pred eeEEEeCcHHHHHHHHh
Q 043334 838 FGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~ 854 (903)
-|+++.+++.+.++++.
T Consensus 264 GG~i~~~~~~l~~~~r~ 280 (456)
T d1c7ga_ 264 GGFLCMNDEEMFSAAKE 280 (456)
T ss_dssp CEEEEESCHHHHHHHHH
T ss_pred eeEEEcCCHHHHHHHHH
Confidence 38898888777777664
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=9.1e-11 Score=129.06 Aligned_cols=188 Identities=15% Similarity=0.135 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~ 726 (903)
.+-.+++++.++...|.+ ..++++.+++|+..++.+++++||.|++++..|......+ ...|.++..++.
T Consensus 49 nPt~~~le~~la~LEgg~-----~a~~~sSGMaAi~~~l~~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~g~~~~~~d~- 122 (384)
T d1cs1a_ 49 NPTRDVVQRALAELEGGA-----GAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVLFVDQ- 122 (384)
T ss_dssp CHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSCEEEEECT-
T ss_pred CHHHHHHHHHHHHHhCCC-----ceEEecChHHHHHHHHhhcccccceecccccccchhhhhhhhhhcccccccccccC-
Confidence 456788999999887743 4677777888999999999999999999999998875554 345778777754
Q ss_pred CCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhh
Q 043334 727 SEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEG 806 (903)
Q Consensus 727 ~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~ 806 (903)
.|.+.+++.+.+++ ++|++-+|. |||..+.+ +++|+++|+++|+++|+|+.|..-.+.. +
T Consensus 123 ------~d~~~~~~~~~~~t-~~v~~Esps-NP~l~v~D---i~~i~~ia~~~g~~~vVDNT~atP~~~~---------P 182 (384)
T d1cs1a_ 123 ------GDEQALRAALAEKP-KLVLVESPS-NPLLRVVD---IAKICHLAREVGAVSVVDNTFLSPALQN---------P 182 (384)
T ss_dssp ------TCHHHHHHHHHTCC-SEEEEECSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC---------G
T ss_pred ------CCHHHHHhhccccc-cEEEEeccc-cccceecc---HHHHhhhhhhcCcEEEEeccccCccccc---------c
Confidence 36889999999888 499999999 99999998 8899999999999999999994211111 1
Q ss_pred hhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+. . +-.|+++|.||.++..|--+ |.++++++.+.+.+..... ...+++...+.+..-|
T Consensus 183 -l~----~----GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL 243 (384)
T d1cs1a_ 183 -LA----L----GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGL 243 (384)
T ss_dssp -GG----G----TCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred -cc----c----CCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhcc
Confidence 11 1 35799999999997655544 5677777656666655433 3445566555555555
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.31 E-value=4e-12 Score=133.15 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=97.3
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+|.+|||+|||+|.+++.||+.. |..+|+++|+++++++.|++|++..+. ...+++.+.++|+.+
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~-------------~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-------------QPPDNWRLVVSDLAD 161 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-------------SCCTTEEEECSCGGG
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc-------------CCCceEEEEeccccc
Confidence 478999999999999999999986 467999999999999999999976421 113689999999988
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
...+. +.||.|+.+.|-- . .+++++.++|||||.++
T Consensus 162 ~~~~~-~~fDaV~ldlp~P-----~--------------------------------------~~l~~~~~~LkpGG~lv 197 (264)
T d1i9ga_ 162 SELPD-GSVDRAVLDMLAP-----W--------------------------------------EVLDAVSRLLVAGGVLM 197 (264)
T ss_dssp CCCCT-TCEEEEEEESSCG-----G--------------------------------------GGHHHHHHHEEEEEEEE
T ss_pred ccccC-CCcceEEEecCCH-----H--------------------------------------HHHHHHHhccCCCCEEE
Confidence 65443 4899998542211 0 45889999999999999
Q ss_pred EEeCCCCcHHHHHHHH-HHCCCeEEEE
Q 043334 188 FNMGGRPGQGVCKRLF-ERRGFRVDKL 213 (903)
Q Consensus 188 ~~~~~~~~~~~l~~ll-~~~gf~~~~~ 213 (903)
+..+.......+.+.+ .+.||...+.
T Consensus 198 ~~~P~i~Qv~~~~~~l~~~~~f~~i~~ 224 (264)
T d1i9ga_ 198 VYVATVTQLSRIVEALRAKQCWTEPRA 224 (264)
T ss_dssp EEESSHHHHHHHHHHHHHHSSBCCCEE
T ss_pred EEeCccChHHHHHHHHHHcCCeecceE
Confidence 9887654444444445 4667865444
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.30 E-value=1.3e-11 Score=131.05 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=85.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||||||.|..++.+|+.. +.+|+|+++|++.++.|++++...|+ .+++++..+|+.+
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~---------------~~~v~~~~~d~~~ 123 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSEN---------------LRSKRVLLAGWEQ 123 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCC---------------CSCEEEEESCGGG
T ss_pred CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhh---------------hhhhHHHHhhhhc
Confidence 5689999999999999999999988 58999999999999999999887776 4789999999877
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+. ++||.|++- ..+ ++ .+...+..+++++.++|||||+++
T Consensus 124 ~~----~~fD~i~si---------~~~-----eh----------------------~~~~~~~~~~~~~~r~LkpgG~~~ 163 (285)
T d1kpga_ 124 FD----EPVDRIVSI---------GAF-----EH----------------------FGHERYDAFFSLAHRLLPADGVML 163 (285)
T ss_dssp CC----CCCSEEEEE---------SCG-----GG----------------------TCTTTHHHHHHHHHHHSCTTCEEE
T ss_pred cc----ccccceeee---------hhh-----hh----------------------cCchhHHHHHHHHHhhcCCCCcEE
Confidence 63 279999851 101 11 111224588999999999999999
Q ss_pred E
Q 043334 188 F 188 (903)
Q Consensus 188 ~ 188 (903)
+
T Consensus 164 l 164 (285)
T d1kpga_ 164 L 164 (285)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.30 E-value=5.6e-12 Score=129.86 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=93.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+.+|.+|||+|||+|..+..+++..|+.+|+|+|+|+.|++.+++++..+ +++..+.+|...
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~------------------~ni~~i~~d~~~ 133 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER------------------ENIIPILGDANK 133 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC------------------TTEEEEECCTTC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh------------------cccceEEEeecc
Confidence 46789999999999999999999988889999999999999999886443 367888888877
Q ss_pred cccCCCCceeEE--EECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 108 YCRDHDIQLERI--VGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 108 ~~~~~~~~fD~I--v~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
........+|++ ++...+. +....++.++.+.|||||.
T Consensus 134 ~~~~~~~~~~v~~i~~~~~~~----------------------------------------~~~~~~l~~~~r~LKpgG~ 173 (230)
T d1g8sa_ 134 PQEYANIVEKVDVIYEDVAQP----------------------------------------NQAEILIKNAKWFLKKGGY 173 (230)
T ss_dssp GGGGTTTCCCEEEEEECCCST----------------------------------------THHHHHHHHHHHHEEEEEE
T ss_pred CcccccccceeEEeeccccch----------------------------------------HHHHHHHHHHHHhcccCce
Confidence 654333345544 3211111 0123679999999999999
Q ss_pred EEEEeCC------CCc---HHHHHHHHHHCCCeEEEEE
Q 043334 186 MIFNMGG------RPG---QGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 186 ll~~~~~------~~~---~~~l~~ll~~~gf~~~~~~ 214 (903)
+++.... ... .+...+.|++.||++++..
T Consensus 174 ~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive~i 211 (230)
T d1g8sa_ 174 GMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEV 211 (230)
T ss_dssp EEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred EEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence 8884321 111 2234567889999988764
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=3e-12 Score=136.65 Aligned_cols=119 Identities=12% Similarity=0.211 Sum_probs=81.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+++|||+|||+|.+++.|++. +.+|+|+|+|+.||+.|+++...++... ...+..+...|+....
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEP------------AFDKWVIEEANWLTLD 121 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSH------------HHHTCEEEECCGGGHH
T ss_pred CCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhccccc------------ccceeeeeeccccccc
Confidence 3579999999999999999987 6899999999999999999987665410 0113456666665432
Q ss_pred --cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 --RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 --~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.+...+||+|++- .....++.. .....+....+++++.++|||||.|+
T Consensus 122 ~~~~~~~~fd~v~~~-----~~~~~~~~~-------------------------~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 122 KDVPAGDGFDAVICL-----GNSFAHLPD-------------------------SKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp HHSCCTTCEEEEEEC-----SSCGGGSCC-------------------------TTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred cccCCCCCceEEEEe-----cCchhhcCC-------------------------cccChHHHHHHHHHHHHHcCcCcEEE
Confidence 1222389999851 111111110 11112334589999999999999999
Q ss_pred EEeCC
Q 043334 188 FNMGG 192 (903)
Q Consensus 188 ~~~~~ 192 (903)
+.+..
T Consensus 172 ~~~~~ 176 (292)
T d1xvaa_ 172 IDHRN 176 (292)
T ss_dssp EEEEC
T ss_pred EeecC
Confidence 97643
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.30 E-value=4.8e-11 Score=132.25 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=139.5
Q ss_pred cHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCc
Q 043334 630 PSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSN 706 (903)
Q Consensus 630 p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y 706 (903)
..+.++++.+.+.+... ..|. ..+.+++.+++++|.++. |.+++ ++.|+.+++.++ +++||+|++|..+|
T Consensus 12 ~~~~~~~~~~~l~~g~~~~~~g~--~v~~fE~~~a~~~g~~~~----v~~~S-Gt~Al~lal~~l~~~~gdeVi~p~~t~ 84 (384)
T d1b9ha_ 12 DDAERNGLVRALEQGQWWRMGGD--EVNSFEREFAAHHGAAHA----LAVTN-GTHALELALQVMGVGPGTEVIVPAFTF 84 (384)
T ss_dssp CHHHHHHHHHHHHTSCCBTTTCS--HHHHHHHHHHHHTTCSEE----EEESC-HHHHHHHHHHHTTCCTTCEEEEESSSC
T ss_pred CHHHHHHHHHHHHcCCeeecCCH--HHHHHHHHHHHHHCcCeE----EEeCC-HHHHHHHHHHHcCCCCCCEEEEecccc
Confidence 45567788888876542 3443 467788999998887743 55554 555566667776 78999999999999
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEe
Q 043334 707 GNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVID 786 (903)
Q Consensus 707 ~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~D 786 (903)
+....++...|++++.+++++ +.+.+|++.+++.++++++ +|++ . +..|.... +.+|.++|+++++.||+|
T Consensus 85 ~a~~~ai~~~g~~p~~~d~~~-~~~~~d~~~~~~~i~~~tk-~i~~---~-~~~g~~~d---~~~i~~~~~~~~i~lieD 155 (384)
T d1b9ha_ 85 ISSSQAAQRLGAVTVPVDVDA-ATYNLDPEAVAAAVTPRTK-VIMP---V-HMAGLMAD---MDALAKISADTGVPLLQD 155 (384)
T ss_dssp THHHHHHHHTTCEEEEECBCT-TTCCBCHHHHHHHCCTTEE-EECC---B-CGGGCCCC---HHHHHHHHHHHTCCBCEE
T ss_pred ccccccccccccccccccccc-cccccchhhhccccccccc-cccc---c-cccccccc---cccchhhhhhhhhhhhhh
Confidence 999999999999999999975 5688999999999988774 5544 3 56687766 788889999999999999
Q ss_pred cCCCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 787 TAFSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 787 eaY~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
.+.+... |.+.. ...+. +-.++-.+.+|.++ .-.-|.++++++++.+.++.
T Consensus 156 ~a~a~ga~~~g~~---------~g~~g------~~~~~Sf~~~K~i~--~g~GG~i~t~~~~~~~~~~~ 207 (384)
T d1b9ha_ 156 AAHAHGARWQGKR---------VGELD------SIATFSFQNGKLMT--AGEGGAVVFPDGETEKYETA 207 (384)
T ss_dssp CTTCTTCEETTEE---------GGGSS------SCEEEECCTTSSSC--SSSCEEEEECTTCHHHHHHH
T ss_pred hceecccccCCEe---------cCccc------ccceeccccccccc--ccccchhhhhhHHHHHHHHH
Confidence 9986432 33322 11111 23344444578765 34478999987767666654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.5e-12 Score=135.71 Aligned_cols=99 Identities=26% Similarity=0.394 Sum_probs=81.9
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+|||+|.++..+++.+++.+++|+|+|+.|++.|+++. +++.+.++|+.+++
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---------------------~~~~~~~~d~~~l~ 142 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---------------------PQVTFCVASSHRLP 142 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---------------------TTSEEEECCTTSCS
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---------------------ccccceeeehhhcc
Confidence 678999999999999999999998999999999999999998763 47899999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... ++||+|+++- .+ ..++++.|+|||||.+++.
T Consensus 143 ~~~-~sfD~v~~~~----~~-----------------------------------------~~~~e~~rvLkpgG~l~~~ 176 (268)
T d1p91a_ 143 FSD-TSMDAIIRIY----AP-----------------------------------------CKAEELARVVKPGGWVITA 176 (268)
T ss_dssp BCT-TCEEEEEEES----CC-----------------------------------------CCHHHHHHHEEEEEEEEEE
T ss_pred CCC-CCEEEEeecC----CH-----------------------------------------HHHHHHHHHhCCCcEEEEE
Confidence 654 4899998531 00 1156788999999999998
Q ss_pred eCCCCc
Q 043334 190 MGGRPG 195 (903)
Q Consensus 190 ~~~~~~ 195 (903)
.+....
T Consensus 177 ~p~~~~ 182 (268)
T d1p91a_ 177 TPGPRH 182 (268)
T ss_dssp EECTTT
T ss_pred eeCCcc
Confidence 765443
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.28 E-value=1.7e-10 Score=127.33 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCEEEEecCC
Q 043334 651 IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKANIVNIPTE 726 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~vv~v~~~ 726 (903)
.+-+.++++.++...|.. ..++++.+++|+..++.+++++||.|++.+..|++....+ +..|.++..++..
T Consensus 66 nPt~~~LE~~la~LEgg~-----~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~ 140 (398)
T d1qgna_ 66 NPTTVVLEEKISALEGAE-----STLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPA 140 (398)
T ss_dssp CHHHHHHHHHHHHHHTCS-----EEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSS
T ss_pred ChHHHHHHHHHHHHhCCc-----eEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccccccccccc
Confidence 456788999999887753 4677777788999899999999999999999999987766 4468888888642
Q ss_pred CCCCcccCHHHH-HHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchh
Q 043334 727 SEVGFKMTEKTL-VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLE 805 (903)
Q Consensus 727 ~~~~f~ld~~~L-~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~ 805 (903)
+.+.. ++...+++ ++|++-+|. |||..+.+ +++|.++|+++|+++|+|+.|..-.+.. +
T Consensus 141 -------~~~~~~~~~~~~~t-~~v~~Esps-NP~l~v~D---i~~ia~ia~~~g~~~vVDnT~atP~~~~-P------- 200 (398)
T d1qgna_ 141 -------DVGALELALNQKKV-NLFFTESPT-NPFLRCVD---IELVSKLCHEKGALVCIDGTFATPLNQK-A------- 200 (398)
T ss_dssp -------CHHHHHHHHHHSCE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHTTCEEEEECTTTCTTTCC-T-------
T ss_pred -------chhhhhhhhccccc-eEEEccCcc-ccccccch---HHHHHHHHhhcCCEEEecceeeccccCC-c-------
Confidence 34444 44555566 599999999 99999988 8999999999999999999985221111 1
Q ss_pred hhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 806 GCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 806 ~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+. . +-.|+++|+||.++..|--+|-+++.+.++++.+..... -..+++...+.+..-|
T Consensus 201 --l~----~----GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl 260 (398)
T d1qgna_ 201 --LA----L----GADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGM 260 (398)
T ss_dssp --TT----T----TCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHG
T ss_pred --hh----h----CCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcc
Confidence 11 1 357899999999987776666555544447777776544 3345555555555555
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2.2e-10 Score=127.64 Aligned_cols=208 Identities=15% Similarity=0.137 Sum_probs=156.1
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
+.+++-|+.+... ++|+.+.+++.+.+.... +..+. .+..+..++.+++..|... ++ +|++++|++++
T Consensus 20 ~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~-~~-~i~~~~~~T~~ 96 (405)
T d1jf9a_ 20 GLPLAYLDSAASA-QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARS-AE-ELVFVRGTTEG 96 (405)
T ss_dssp TEECEECCTTTCC-CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSC-GG-GEEEESSHHHH
T ss_pred CCCeEEEeCcccc-CCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCC-cc-cccccCcHHHH
Confidence 4567888776654 678899999988776532 22222 2344566777888778543 23 89999999999
Q ss_pred HHHHHHH----hccCCCeEEEcCCCcHH----HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCC
Q 043334 685 FNKLVLC----CILEGGTLCFPAGSNGN----YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPT 756 (903)
Q Consensus 685 l~~ll~~----l~~pGD~Vlv~~P~y~~----~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~ 756 (903)
+..++.+ ...+||.|++.+-.|++ +...++..|++++.+|++++ ..+|++.+++++++++ +++.++..+
T Consensus 97 ~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~--g~~~~~~~~~~i~~~t-~lv~~~~v~ 173 (405)
T d1jf9a_ 97 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPD--GTLQLETLPTLFDEKT-RLLAITHVS 173 (405)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTT--SCBCGGGHHHHCCTTE-EEEEEESBC
T ss_pred HHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCC--CcCCHHHHHHhccCCc-EEEEEecCC
Confidence 9887765 35789999999999887 44555778999999999864 3588999999999888 489999998
Q ss_pred CCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 757 INPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 757 ~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
|.||.+++ +++|.++|+++|+++++|-+.+.-. -+ ++ +..+ +..+++.|..|.+|.+|
T Consensus 174 -~~tG~~~p---i~~i~~~~~~~g~~~~vD~~q~~g~---~~---id----~~~~-------~~D~~~~s~hK~~Gp~G- 231 (405)
T d1jf9a_ 174 -NVLGTENP---LAEMITLAHQHGAKVLVDGAQAVMH---HP---VD----VQAL-------DCDFYVFSGHKLYGPTG- 231 (405)
T ss_dssp -TTTCCBCC---HHHHHHHHHHTTCEEEEECTTTTTT---SC---CC----HHHH-------TCSEEEEEGGGTTSCSS-
T ss_pred -CcccccCc---hHHhhhHHHHcCCeeecccceeccc---cc---cc----hhhc-------CCceeeccccccccCCC-
Confidence 99999999 8888999999999999999874211 01 11 1111 35789999999988666
Q ss_pred eeeEEEeCcHHHHHH
Q 043334 837 KFGFLVLNHPQLVDA 851 (903)
Q Consensus 837 RiG~lv~~~~~li~~ 851 (903)
+|++..+++ +.+.
T Consensus 232 -~g~l~v~~~-~~~~ 244 (405)
T d1jf9a_ 232 -IGILYVKEA-LLQE 244 (405)
T ss_dssp -CEEEEECHH-HHTT
T ss_pred -ceeeeechh-hhcc
Confidence 799999876 5544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=7.2e-12 Score=127.64 Aligned_cols=78 Identities=17% Similarity=0.132 Sum_probs=67.3
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.++.+|||+|||+|+.+..+|+..+ ..+|+++|+++++++.|++|++..++ .++.+.++|..
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~----------------~n~~~~~~d~~ 136 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI----------------ENVIFVCGDGY 136 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCGG
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc----------------cccccccCchH
Confidence 34689999999999999999999874 56999999999999999999988876 58999999998
Q ss_pred ccccCCCCceeEEEEC
Q 043334 107 AYCRDHDIQLERIVGC 122 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~N 122 (903)
+..... ++||+|+++
T Consensus 137 ~~~~~~-~~fD~I~~~ 151 (213)
T d1dl5a1 137 YGVPEF-SPYDVIFVT 151 (213)
T ss_dssp GCCGGG-CCEEEEEEC
T ss_pred Hccccc-cchhhhhhh
Confidence 765544 389999864
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.2e-11 Score=122.85 Aligned_cols=81 Identities=9% Similarity=0.044 Sum_probs=70.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+.+|||++||||.+++.++.+ +..+|+++|.|+.+++.+++|+..++. .++.++++|..++.
T Consensus 43 ~~~~vLDlfaGsG~~giealsr-Ga~~v~~VE~~~~a~~~~k~N~~~~~~----------------~~~~ii~~d~~~~l 105 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSR-YAAGATLIEMDRAVSQQLIKNLATLKA----------------GNARVVNSNAMSFL 105 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTC----------------CSEEEECSCHHHHH
T ss_pred chhhhhhhhccccceeeeEEec-CcceeEEEEEeechhhHHHHHHhhccc----------------cceeeeeecccccc
Confidence 5789999999999999997775 356999999999999999999987765 47899999999887
Q ss_pred cCCCCceeEEEECCCCCC
Q 043334 110 RDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~ 127 (903)
.....+||+|+.+|||-.
T Consensus 106 ~~~~~~fDlIf~DPPY~~ 123 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPFRR 123 (183)
T ss_dssp SSCCCCEEEEEECCSSST
T ss_pred cccccccCEEEEcCcccc
Confidence 655568999999999973
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.25 E-value=1.1e-11 Score=134.37 Aligned_cols=188 Identities=14% Similarity=0.224 Sum_probs=114.4
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhC-----CCEEEEEeCCHHHHHHHHHHHHhccccc
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWL-----PSKVYGLDINPRAIRISWINLYLNALDE 81 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~-----~~~V~giDis~~al~~A~~n~~~~gl~~ 81 (903)
+|+|+.-+..+...+..... ..++.+|||.|||+|.+.+.+...+. ..+++|+|+++.+++.|+.|+..++.
T Consensus 95 ~~TP~~i~~~m~~l~~~~~~-~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-- 171 (328)
T d2f8la1 95 QMTPDSIGFIVAYLLEKVIQ-KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-- 171 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHHT-TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--
T ss_pred EECcHHHHHHHHHHHHHHhC-CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--
Confidence 57798443323232222111 12467899999999999999876542 33799999999999999999987764
Q ss_pred CCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccc
Q 043334 82 KGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVE 161 (903)
Q Consensus 82 ~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~ 161 (903)
+..+.++|....... .+||+|++||||......... ... . ...
T Consensus 172 ---------------~~~~~~~d~~~~~~~--~~fD~vi~NPPy~~~~~~~~~----~~~-~------------~~~--- 214 (328)
T d2f8la1 172 ---------------KMTLLHQDGLANLLV--DPVDVVISDLPVGYYPDDENA----KTF-E------------LCR--- 214 (328)
T ss_dssp ---------------CCEEEESCTTSCCCC--CCEEEEEEECCCSEESCHHHH----TTS-T------------TCC---
T ss_pred ---------------hhhhhcccccccccc--ccccccccCCCCCCCccchhh----hhc-c------------hhc---
Confidence 577888887765443 389999999999643221110 000 0 000
Q ss_pred ccccHHHHHHHHHHHhhcccCCcEEEEEeCCC----CcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcc-eee
Q 043334 162 DQFGLGLIARAVEEGIGVIKPSGIMIFNMGGR----PGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDIS-ALV 236 (903)
Q Consensus 162 ~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~~----~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~-~l~ 236 (903)
..........+++.+.+.|+|||++.+.++.. .....+++.+.+.+ .+..++. ..... |..+.+. .++
T Consensus 215 ~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~~-~i~~ii~-----lp~~~-F~~~~~~t~il 287 (328)
T d2f8la1 215 EEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNG-HIEGIIK-----LPETL-FKSEQARKSIL 287 (328)
T ss_dssp SSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHE-EEEEEEE-----CCGGG-SCC-CCCEEEE
T ss_pred ccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhCC-cEEEEEE-----CCccc-cCCCCCCeEEE
Confidence 00111223468999999999999998876632 23344556665553 3333321 12233 3445544 455
Q ss_pred eeecc
Q 043334 237 EIEKN 241 (903)
Q Consensus 237 ~~e~~ 241 (903)
.+.+.
T Consensus 288 vl~K~ 292 (328)
T d2f8la1 288 ILEKA 292 (328)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 66654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1e-11 Score=127.43 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|||+|||+|+.+..+|+..+ ..+|+|+|+++++++.|++|++..+++.. ...++.+..+|..
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~-----------~~~~~~~~~gD~~ 142 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-----------SSGRVQLVVGDGR 142 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-----------HTSSEEEEESCGG
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc-----------cccceEEEEeecc
Confidence 34789999999999999999998764 56999999999999999999987664211 1257999999998
Q ss_pred ccccCCCCceeEEEEC
Q 043334 107 AYCRDHDIQLERIVGC 122 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~N 122 (903)
....... .||+|+++
T Consensus 143 ~~~~~~~-~fD~I~~~ 157 (224)
T d1i1na_ 143 MGYAEEA-PYDAIHVG 157 (224)
T ss_dssp GCCGGGC-CEEEEEEC
T ss_pred cccchhh-hhhhhhhh
Confidence 8765543 89999854
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=7.3e-12 Score=128.96 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=87.3
Q ss_pred chhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhh
Q 043334 12 DWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEK 91 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~ 91 (903)
.|...+.+.+..... .+|.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.|+++....+
T Consensus 37 ~w~~~~~~~la~~~~--~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~~~~------------- 100 (229)
T d1zx0a1 37 RWETPYMHALAAAAS--SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAPRQT------------- 100 (229)
T ss_dssp GGGHHHHHHHHHHHT--TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGGGCS-------------
T ss_pred HHHHHHHHHHHHhhc--cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhhhcc-------------
Confidence 365555454443222 367899999999999999998763 4689999999999999999876554
Q ss_pred cccCCcEEEEEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 92 KTLLDRVEFHESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 92 ~~~~~~v~~~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
.++.++.+|+...... ..++||.|+.+....... .. ......
T Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~---------~~------------------------~~~~~~ 143 (229)
T d1zx0a1 101 ----HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEE---------TW------------------------HTHQFN 143 (229)
T ss_dssp ----SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGG---------GT------------------------TTHHHH
T ss_pred ----cccccccccccccccccccccccceeecccccccc---------cc------------------------cccCHH
Confidence 3688888887665322 234899998543222110 00 112234
Q ss_pred HHHHHHhhcccCCcEEEE
Q 043334 171 RAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~ 188 (903)
.++++++++|||||+|++
T Consensus 144 ~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 144 FIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp HHHHTHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEE
Confidence 789999999999999987
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.22 E-value=2.3e-11 Score=120.71 Aligned_cols=92 Identities=13% Similarity=0.155 Sum_probs=74.4
Q ss_pred HHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 15 FTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 15 ~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
..++..|... .++.+|||++||||.+++.++.+ +..+|+++|.|+++++.+++|+..++.
T Consensus 30 ealFn~l~~~----~~~~~vLDlfaGsG~~g~ea~sr-Ga~~v~~ve~~~~a~~~~~~N~~~~~~--------------- 89 (182)
T d2fhpa1 30 ESIFNMIGPY----FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAITKE--------------- 89 (182)
T ss_dssp HHHHHHHCSC----CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHh----cCCCEEEEcccccccccceeeec-chhHHHHHHHHHHHHHHHHHHhhhhhc---------------
Confidence 3455555433 36899999999999999998875 356899999999999999999988776
Q ss_pred CCcEEEEEcccccccc---CCCCceeEEEECCCCC
Q 043334 95 LDRVEFHESDLLAYCR---DHDIQLERIVGCIPQI 126 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~---~~~~~fD~Iv~NpPy~ 126 (903)
.++++++++|..++.. ....+||+|+.+|||.
T Consensus 90 ~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~ 124 (182)
T d2fhpa1 90 PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 124 (182)
T ss_dssp GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred ccccccccccchhhhhhhcccCCCcceEEechhhh
Confidence 2589999999877542 1234899999999996
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.21 E-value=4.6e-10 Score=124.57 Aligned_cols=167 Identities=8% Similarity=0.030 Sum_probs=127.2
Q ss_pred cCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH----HHcCCE
Q 043334 644 QNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA----RFLKAN 719 (903)
Q Consensus 644 y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~----~~~G~~ 719 (903)
|.+.+...+-++.+++.++...|.. .-++++.+++|+..++.+++++||+|++++..|++....+ ...|.+
T Consensus 50 ~~YsR~~nPT~~~LE~~la~LE~~~-----~a~~~~SGmaAi~~~~~~l~~~gd~il~~~~~Yg~t~~l~~~~~~~~gi~ 124 (421)
T d2ctza1 50 NIYSRIMNPTVDVLEKRLAALEGGK-----AALATASGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGIE 124 (421)
T ss_dssp GSCBTTBCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTCE
T ss_pred ceecCCCCHHHHHHHHHHHHHhCCC-----eEEEecChHHHHHHHHHhhcccccceeecCCcCCchhHHHHHHHhhcccc
Confidence 4344444567889999999987753 3566677778898889999999999999999998876655 568999
Q ss_pred EEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCC
Q 043334 720 IVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGW 799 (903)
Q Consensus 720 vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~ 799 (903)
+..++... +.+..++.+++++ ++|++-+|+ |||..+.+ +++|+++|+++|+.+|+|+.|+..-+.-.
T Consensus 125 ~~~~d~~~------~~~~~~~~~~~~t-~li~~Etps-NP~l~v~D---i~~i~~iA~~~g~~~vvDnT~a~tP~~~~-- 191 (421)
T d2ctza1 125 VRFTSREE------RPEEFLALTDEKT-RAWWVESIG-NPALNIPD---LEALAQAAREKGVALIVDNTFGMGGYLLR-- 191 (421)
T ss_dssp EEECCTTC------CHHHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHTCEEEEECGGGGGGTSCC--
T ss_pred ceeccccc------CcchhccccCCCc-eEEEEcCCC-cceeEecc---hHHHHHHHHhcCCceEecccccccceecc--
Confidence 98886532 3566677777777 599999999 99999988 89999999999999999999851111111
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
+ +. - +-.|+++|.||.++..|--+|=+++
T Consensus 192 ------P-l~---~-----GaDiVvhS~TKyl~GHsD~l~G~vv 220 (421)
T d2ctza1 192 ------P-LA---W-----GAALVTHSLTKWVGGHGAVIAGAIV 220 (421)
T ss_dssp ------G-GG---G-----TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred ------c-cc---c-----CCcEEEEechhhccCCCCeEEEEEE
Confidence 1 11 1 3579999999999877777764443
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.5e-10 Score=130.28 Aligned_cols=203 Identities=9% Similarity=-0.007 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCcEEecCchH-HHHHHHHHHh---ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC
Q 043334 652 DVTPSIQQYIKSNFGFPIDINAEFIYADCSQ-SLFNKLVLCC---ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES 727 (903)
Q Consensus 652 ~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~-~al~~ll~~l---~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~ 727 (903)
.+...+.+++.+.+|.+... .-++|+|++ .++..++.+. ..+++.|+++...|..+..++..+|++++.|+...
T Consensus 94 ~le~~~~~~~~~l~g~~~~~--~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~~~~~v~~~~ 171 (445)
T d3bc8a1 94 KITNSLVLNVIKLAGVHSVA--SCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVL 171 (445)
T ss_dssp HHHHHHHHHHHHHHTCTTCC--EEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTCEEEEECCEE
T ss_pred HHHHHHHHHHHHHhCCCccc--CccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCCeeEEEEeec
Confidence 45566788888889987653 355555554 4444444433 35678999999999999999999999999997532
Q ss_pred -CCCcccCHHHHHHHhhcC---CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc-cCCCCCCCC
Q 043334 728 -EVGFKMTEKTLVTILETV---KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLE-FNYEGWGGW 802 (903)
Q Consensus 728 -~~~f~ld~~~L~~~l~~~---~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~-f~~~~~s~~ 802 (903)
++.+.+|+++|++++++. ...+|+++.|+ |++|.+-+ +++|.++|+++|+++++|.+|+... |....
T Consensus 172 ~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~-~~~G~~~~---~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~---- 243 (445)
T d3bc8a1 172 EGDELRTDLKAVEAKIQELGPEHILCLHSTTAC-FAPRVPDR---LEELAVICANYDIPHVVNNAYGLQSSKCMHL---- 243 (445)
T ss_dssp ETTEEECCHHHHHHHHHHHCGGGEEEEEEESSC-CTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHHH----
T ss_pred cCcccccCHHHHHHHHHhccccCeEEEEEeCCC-CCCeeehh---HHHHHHHHHHhCCcEEEEccchhhhhhcccc----
Confidence 346889999999988642 22488899998 99999977 8899999999999999999996422 11111
Q ss_pred chhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCC--CCCcHHHHHHHHHHH
Q 043334 803 DLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGL--SKPHSTVRYAIKKLL 873 (903)
Q Consensus 803 s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~--~~~s~~~Q~aa~~~L 873 (903)
......+. +-.++..|.+|.++.|. -.|+++..+..+++.+...... .+.....+++....+
T Consensus 244 --~~~~~~~~------~vd~~~~s~hK~~~~p~-g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (445)
T d3bc8a1 244 --IQQGARVG------RIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSL 307 (445)
T ss_dssp --HHHHHHHS------CCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSCBCSHHHHHHHHHHHHH
T ss_pred --chhccCcC------CcceEEecCccccccCC-CCceeeeCChHHHHHHHHHHhhcccCcchHHHHHHHHHH
Confidence 01111121 23578889999886443 4678888777677777654432 222333444444444
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.19 E-value=2.2e-10 Score=120.10 Aligned_cols=162 Identities=11% Similarity=0.075 Sum_probs=118.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEc
Q 043334 623 DQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFP 702 (903)
Q Consensus 623 g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~ 702 (903)
+++..+++|.+++++.++...+...+|..++.+.+++.+++++|.+.. +|++|+|+++++..++..++.+|+.+++.
T Consensus 6 nd~~~g~~P~v~eAl~~~~~~~~~~y~~~~~~~~lr~~ia~~~g~~~~---~v~~tsggtean~~a~~~~~~~~~~~~~~ 82 (340)
T d1svva_ 6 NDYSVGMHPKILDLMARDNMTQHAGYGQDSHCAKAARLIGELLERPDA---DVHFISGGTQTNLIACSLALRPWEAVIAT 82 (340)
T ss_dssp CSCSSCCCHHHHHHHHHHTTCCCCSTTCSHHHHHHHHHHHHHHTCTTS---EEEEESCHHHHHHHHHHHHCCTTEEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHhCCCcc---eEEEcCCHHHHHHHHHHHHhhhccccccc
Confidence 466677888999999988766666677777888889999999998754 89999999999999999999999999999
Q ss_pred CCCcHHHHHHH--HHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHH
Q 043334 703 AGSNGNYVSAA--RFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTV 775 (903)
Q Consensus 703 ~P~y~~~~~~~--~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~i 775 (903)
.+.+..+.... ...+.......... .. .+.+......... .+..++++.++ |++|.+...+++..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 158 (340)
T d1svva_ 83 QLGHISTHETGAIEATGHKVVTAPCPD--GK-LRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQYTKQELEDISAS 158 (340)
T ss_dssp TTSHHHHSSTTHHHHTTCCEEEECCTT--SC-CCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCCCHHHHHHHHHH
T ss_pred cccceeeeecccccccceeeeeccccc--cc-ccchhHHHHhhhhhcccCCcceeeeeccc-ccccccccHHHhhhhhcc
Confidence 99888765433 23334444443322 21 2333333222211 12345555555 677888899999999999
Q ss_pred HHhCCcEEEEecCCCC
Q 043334 776 CAKYGARVVIDTAFSG 791 (903)
Q Consensus 776 a~k~~i~VI~DeaY~~ 791 (903)
|.+++.+++.|++|..
T Consensus 159 ~~~~g~~~~~d~a~~~ 174 (340)
T d1svva_ 159 CKEHGLYLFLDGARLA 174 (340)
T ss_dssp HHHHTCEEEEECTTHH
T ss_pred cccccceeeeecccee
Confidence 9999999999999954
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.9e-11 Score=129.25 Aligned_cols=137 Identities=12% Similarity=0.088 Sum_probs=96.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+|.+|||+|||+|.+++.||+.. +..+|+++|+++++++.|++|++..+.... ........+++++.++|+.+
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~-----~~~~~~~~~nv~~~~~di~~ 171 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK-----LSHVEEWPDNVDFIHKDISG 171 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHT-----TTCSSCCCCCEEEEESCTTC
T ss_pred CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhh-----hhhhhccccceeEEecchhh
Confidence 478999999999999999999986 456999999999999999999986543100 00011235689999999877
Q ss_pred cccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 108 YCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 108 ~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.... ....||.|+.+.|.- . .+++++.++|||||++
T Consensus 172 ~~~~~~~~~fD~V~LD~p~P-----~--------------------------------------~~l~~~~~~LKpGG~l 208 (324)
T d2b25a1 172 ATEDIKSLTFDAVALDMLNP-----H--------------------------------------VTLPVFYPHLKHGGVC 208 (324)
T ss_dssp CC-------EEEEEECSSST-----T--------------------------------------TTHHHHGGGEEEEEEE
T ss_pred cccccCCCCcceEeecCcCH-----H--------------------------------------HHHHHHHHhccCCCEE
Confidence 6432 224799998542211 0 3588899999999999
Q ss_pred EEEeCCCCcHHHHHHHHHHC--CCeEEEE
Q 043334 187 IFNMGGRPGQGVCKRLFERR--GFRVDKL 213 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~--gf~~~~~ 213 (903)
++..+.......+.+.+++. +|..++.
T Consensus 209 v~~~P~i~Qv~~~~~~l~~~~~~f~~i~~ 237 (324)
T d2b25a1 209 AVYVVNITQVIELLDGIRTCELALSCEKI 237 (324)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCceeeEE
Confidence 99887654444444556643 5776665
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.19 E-value=3.5e-10 Score=126.86 Aligned_cols=198 Identities=13% Similarity=0.129 Sum_probs=139.2
Q ss_pred HHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCC-CCCc
Q 043334 655 PSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCI--LEGGTLCFPAGSNGNYVSAARFLKANIVNIPTES-EVGF 731 (903)
Q Consensus 655 ~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~-~~~f 731 (903)
..+..++.+..|.+.. ...+..|+++++..++.+.. .+++.|+++.-.++.+...+...|++++.++... ++.+
T Consensus 116 ~~~~~~~~~~~g~~~~---~~~~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~~~~~v~~~~~~~~~ 192 (434)
T d2z67a1 116 NKILESFFKQLGLNVH---AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGMNMRLVETVLDGDRV 192 (434)
T ss_dssp HHHHHHHHHHTTCCCE---EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTCEEEEECCEEETTEE
T ss_pred HHHHHHHHHhcCCCcc---eeecCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCCcceEEEeecCCCcc
Confidence 3344556666787655 56677777777776666653 3789999999999999999999999999997632 3457
Q ss_pred ccCHHHHHHHhhc----CCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCc-cCCCCCCCCchhh
Q 043334 732 KMTEKTLVTILET----VKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLE-FNYEGWGGWDLEG 806 (903)
Q Consensus 732 ~ld~~~L~~~l~~----~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~-f~~~~~s~~s~~~ 806 (903)
.+|+++|++++++ ....+|++++|+ +++|.+.+ +++|.++|+++|+++++|++|+... |.+.
T Consensus 193 ~~d~~~l~~~i~~~~~~~~~~~v~~~~~~-~~~g~~~~---l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~--------- 259 (434)
T d2z67a1 193 YVPVEDIENAIKKEIELGNRPCVLSTLTF-FPPRNSDD---IVEIAKICENYDIPHIINGAYAIQNNYYLE--------- 259 (434)
T ss_dssp ECCHHHHHHHHHHHHHTTCCEEEEEESSC-CTTBCCCC---HHHHHHHHHHHTCCEEEECTTTTTCHHHHH---------
T ss_pred CCCHHHHHHHHHhhhhcCCceEEEeccCc-CCCccccC---HHHHHHHHHHhCCeEEEeccchhhhhhccc---------
Confidence 8999999999874 233588999998 99999977 8899999999999999999995321 1110
Q ss_pred hhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCCCC--CCCcHHHHHHHHHHH
Q 043334 807 CLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFPGL--SKPHSTVRYAIKKLL 873 (903)
Q Consensus 807 ~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~~~--~~~s~~~Q~aa~~~L 873 (903)
........ ...+++.|++|.++. +.-.|++...++.+++.+...... ...+.....++...+
T Consensus 260 ~~~~~~~~----~~D~~~~s~hK~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~ 323 (434)
T d2z67a1 260 KLKKAFKY----RVDAVVSSSDKNLLT-PIGGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSM 323 (434)
T ss_dssp HHHHHHTS----CCSEEEEEHHHHHCC-CSSCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHH
T ss_pred cccccccC----CcceEEEcCcccccc-CCCccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHH
Confidence 11111121 246789999998864 334567777777688888776542 222333344444444
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=8.4e-12 Score=133.27 Aligned_cols=213 Identities=13% Similarity=0.037 Sum_probs=141.5
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCC
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEG 696 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pG 696 (903)
+|||....-.- |+|++++++.++.. ....+|..+...++++.+++++|.+ ++++++|++++...++.+++.+|
T Consensus 1 ~~~~~~~~~t~-p~p~v~~A~~~a~~-g~~~yg~~p~~~~le~~lA~~~G~~-----~~~~~~sGt~A~~~al~a~~~~g 73 (343)
T d1m6sa_ 1 MIDLRSDTVTK-PTEEMRKAMAQAEV-GDDVYGEDPTINELERLAAETFGKE-----AALFVPSGTMGNQVSIMAHTQRG 73 (343)
T ss_dssp CEECSCGGGCC-CCHHHHHHHHTCCC-CCGGGTCCHHHHHHHHHHHHHTTCS-----EEEEESCHHHHHHHHHHHHCCTT
T ss_pred CcccccccCCC-CCHHHHHHHHhhhc-CCcccCCCHHHHHHHHHHHHHHCCC-----eEEEeCCHHHHHHHHHHHHhccC
Confidence 36664443333 35678888876531 2223454456677888888888864 46666777778888899999999
Q ss_pred CeEEEcCCCcHHHHH---HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC------CcEEEEECCCCCCcccCCCHH
Q 043334 697 GTLCFPAGSNGNYVS---AARFLKANIVNIPTESEVGFKMTEKTLVTILETVK------KPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 697 D~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~------~~~vil~~P~~NPTG~v~s~e 767 (903)
|.+++..+.+..+.. .....+..+..++.. .+..|++.+++.+...+ ...++.+.++ ||.|.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 149 (343)
T d1m6sa_ 74 DEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK---NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHN-RSGGRVVPLE 149 (343)
T ss_dssp CEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE---TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBT-TTTSBCCCHH
T ss_pred Cceeccccccceeeecccccccccceeeccccc---cCccCHHHHHHhhhhhhcccccccccccccccc-cCCceecCHH
Confidence 999999999877654 344556666666653 34579999998887542 2245555565 9999999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHH
Q 043334 768 EIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQ 847 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~ 847 (903)
++.+|.++|++++++++.|++|.......... . ... .... ....+.+.+ .+..|.+.|+++...+
T Consensus 150 ~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~---~---~~~-~~~~-----~~~~~~~~~--~~~~g~~~~~~~~~~~- 214 (343)
T d1m6sa_ 150 NIKEICTIAKEHGINVHIDGARIFNASIASGV---P---VKE-YAGY-----ADSVMFCLS--KGLCAPVGSVVVGDRD- 214 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEETTHHHHHHHHCC---C---HHH-HHHT-----CSEEEEESS--STTCCSSCEEEEECHH-
T ss_pred HHHHHHHHHHhcCeEEEecccccccccccccc---c---hhh-hccc-----ccccccccc--ccccccccccccccHH-
Confidence 99999999999999999999996433322221 1 011 1111 223333333 3445777888888876
Q ss_pred HHHHHHhC
Q 043334 848 LVDAFSSF 855 (903)
Q Consensus 848 li~~l~~~ 855 (903)
++......
T Consensus 215 ~~~~~~~~ 222 (343)
T d1m6sa_ 215 FIERARKA 222 (343)
T ss_dssp HHHHHHHH
T ss_pred HHhhhHhh
Confidence 65555443
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.9e-11 Score=123.99 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=91.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcch----hh---------hccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYD----AE---------KKTL 94 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~----~~---------~~~~ 94 (903)
..++.+|||+|||+|.+++.++... ..+|+|+|+|+.|++.|++++.....+........ .+ ....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 3578899999999999988777652 45899999999999999999876543210000000 00 0000
Q ss_pred CCcE-EEEEcccccc---ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHH
Q 043334 95 LDRV-EFHESDLLAY---CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIA 170 (903)
Q Consensus 95 ~~~v-~~~~gDl~~~---~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~ 170 (903)
..++ .....+.... .....++||+|+++- . + ++. ....+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~------~---l-----~~~--------------------~~~~~~~~ 173 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL------A---M-----ECA--------------------CCSLDAYR 173 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES------C---H-----HHH--------------------CSSHHHHH
T ss_pred hhhhhcccccccccccccccccCCcccEEeehh------h---H-----HHh--------------------cccHHHHH
Confidence 0011 1111111111 111234899998520 0 0 100 01122345
Q ss_pred HHHHHHhhcccCCcEEEEEeC---------------CCCcHHHHHHHHHHCCCeEEEE
Q 043334 171 RAVEEGIGVIKPSGIMIFNMG---------------GRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 171 ~~l~~~~~~LkpgG~ll~~~~---------------~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+++++.++|||||.+++... .....+.++++++++||.++++
T Consensus 174 ~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 231 (257)
T d2a14a1 174 AALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQL 231 (257)
T ss_dssp HHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHhccCCCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence 889999999999999998321 2235677889999999998776
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.15 E-value=2.3e-09 Score=118.21 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=138.4
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv 721 (903)
+.+...+-+.++++.++...|.. ..++++++++|+..++.+++.+||.|++.+..|+..... +...|.++.
T Consensus 53 YsR~~nPT~~~le~~la~LEg~~-----~a~~~sSGmaAi~~~~l~l~~~gd~vv~~~~~yg~t~~~~~~~~~~~gi~~~ 127 (394)
T d1e5ea_ 53 YTRLGNPTVSNLEGKIAFLEKTE-----ACVATSSGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVD 127 (394)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEE
T ss_pred ecCCCCHHHHHHHHHHHHHhCCc-----ceeeeccchHHHHHHHHhhcccccccccccceeehhhHhHHHHhhccceeee
Confidence 33334566888999999887754 456677778899988999999999999999999876554 467899999
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHH-hCCcEEEEecCCCCCccCCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCA-KYGARVVIDTAFSGLEFNYEGWG 800 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~-k~~i~VI~DeaY~~l~f~~~~~s 800 (903)
.++.. |++.+++++++++ ++|++.+|. |||..+.. ++++++.++ ++|+++|+|+.|+.-.+..
T Consensus 128 ~~d~~-------d~~~~~~~i~~~t-~lv~~Etp~-NP~l~v~D---i~~~~~~~~~~~g~~vvvDnT~atP~~~~---- 191 (394)
T d1e5ea_ 128 FINTA-------IPGEVKKHMKPNT-KIVYFETPA-NPTLKIID---MERVCKDAHSQEGVLVIADNTFCSPMITN---- 191 (394)
T ss_dssp EECTT-------STTHHHHHCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHTSTTCEEEEECTTTCTTTCC----
T ss_pred ccCCC-------CHHHHHHhhcccc-cEEEEeccC-Ccceeeeh---hhhhhhccccccCeEEEecCcccCcccCC----
Confidence 99763 4678899998887 599999999 99999988 667777665 4689999999985322111
Q ss_pred CCchhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHH--hCCC--CCCCcHHHHHHHHHHH
Q 043334 801 GWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFS--SFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 801 ~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~--~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +. . +-.|+++|.||.++..|.=+ |.++++++ .+...+ .++. -..+++...+.+..-|
T Consensus 192 -----P-l~----~----GaDiVvhS~TKy~~GhsDv~~G~v~~~~~-~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl 254 (394)
T d1e5ea_ 192 -----P-VD----F----GVDVVVHSATKYINGHTDVVAGLICGKAD-LLQQIRMVGIKDITGSVISPHDAWLITRGL 254 (394)
T ss_dssp -----G-GG----G----TCSEEEEETTTTTTCSSCCCCEEEEECHH-HHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred -----c-hh----c----CCCEEEechhhhcCCCcccccccccchhh-HHHHHHHHHHHHhhCCCCChHHHHHHHhhc
Confidence 1 11 1 35799999999997655555 45666655 665443 2333 3335555555555555
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=7.3e-10 Score=122.18 Aligned_cols=192 Identities=13% Similarity=0.049 Sum_probs=139.5
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH----HcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR----FLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~----~~G~~vv 721 (903)
+.+-..+-++++++.++...|.. ..++++.+++|+..++.+++++||+|++.+..|+.....++ ..|.++.
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~-----~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi~~~ 126 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGA-----GCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGVTTS 126 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTCEEE
T ss_pred eECCCChhHHHHHHHHHHHhCCc-----cEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhcccccccccc
Confidence 33334566888999999987753 57778888999999999999999999999999999877764 4688888
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHh--CCcEEEEecCCCCCccCCCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAK--YGARVVIDTAFSGLEFNYEGW 799 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k--~~i~VI~DeaY~~l~f~~~~~ 799 (903)
.++.. |.+.+++++++++ ++|++-+|. |||..+.+ +++|.++|++ +|+++|+|+.|....+..
T Consensus 127 ~~d~~-------d~~~~~~~i~~~t-~~i~~Etps-NP~l~v~D---i~~i~~~a~~~~~g~~~vVDnT~atP~~~~--- 191 (391)
T d1cl1a_ 127 WFDPL-------IGADIVKHLQPNT-KIVFLESPG-SITMEVHD---VPAIVAAVRSVVPDAIIMIDNTWAAGVLFK--- 191 (391)
T ss_dssp EECTT-------CGGGGGGTCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHHHHCTTCEEEEECTTTTTTSSC---
T ss_pred cccCc-------ccccccccccccc-ceeeecccC-cccccccc---cHHHHHHHHhccCCcEEEEeccccchhhhc---
Confidence 88652 4677888888777 599999999 99999998 6677777755 599999999995322111
Q ss_pred CCCchhhhhhhhccCCCCCCceEEEccCchhccccccee-eEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 800 GGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKF-GFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 800 s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRi-G~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +. - +-.|++.|+||.++..|-=+ |.++.+++ +.+.+..... ...+++...+.+..-|
T Consensus 192 ------P-l~---~-----GaDivvhS~TKy~~GhsdvlgG~vv~~~~-~~~~~~~~~~~~G~~~~p~~a~ll~rgl 252 (391)
T d1cl1a_ 192 ------A-LD---F-----GIDVSIQAATKYLVGHSDAMIGTAVCNAR-CWEQLRENAYLMGQMVDADTAYITSRGL 252 (391)
T ss_dssp ------G-GG---G-----TCSEEEEETTTTTTCSSSCCCEEEEECTT-THHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred ------c-cc---c-----ccceEEeecchhccccccccccceecccc-ccccchhhhhcccccCCchhhhhhhccc
Confidence 1 11 1 25799999999997655544 56666655 6665554432 3345555555555544
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=99.14 E-value=3.9e-09 Score=117.37 Aligned_cols=210 Identities=14% Similarity=0.164 Sum_probs=155.1
Q ss_pred CCCCeEEccCCCCCCCCcHHHHHHHHHHHHccC--CCCCc-------hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 613 PNSGLIHMDVDQSFLPIPSLVKAAIFESFARQN--MSESE-------IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 613 ~~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~--~~~G~-------~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.++++|-|+.+... ++|+.+++++.+.+..+. +..+. .+..+..++.+++..|.+.. + .|++++++++
T Consensus 19 ~~~~~iYld~a~~~-~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~-~-~i~~~~~tt~ 95 (408)
T d1t3ia_ 19 NGHPLVYLDNAATS-QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSP-R-EIVYTRNATE 95 (408)
T ss_dssp TTEECEECBTTTCC-CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCG-G-GEEEESSHHH
T ss_pred CCCCeEEeeCcccc-CCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCc-c-cEEeecchHH
Confidence 34567889877765 578899999988876642 21221 13456677888888887643 3 7999999999
Q ss_pred HHHHHHHH----hccCCCeEEEcCCCcHHHH----HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECC
Q 043334 684 LFNKLVLC----CILEGGTLCFPAGSNGNYV----SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGP 755 (903)
Q Consensus 684 al~~ll~~----l~~pGD~Vlv~~P~y~~~~----~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P 755 (903)
+++.+... -.++||+|++.+-.|+... ..++..|.++..+|.+.. ...+.+.+++.+++++ ++|.++.-
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~l~~~~~~~t-~lv~i~~~ 172 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQ--ESFDLEHFKTLLSEKT-KLVTVVHI 172 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTT--SSBCHHHHHHHCCTTE-EEEEEESB
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeecccc--ccccHHHhhhccCCCc-eEEEEecc
Confidence 99887765 3568999999998888643 345667999999998753 3478999999998877 48888888
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc
Q 043334 756 TINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA 835 (903)
Q Consensus 756 ~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G 835 (903)
+ |-||..++ +++|.++|+++|+++++|-+.+. +.-+ ++ +..+ +..+++.|..|.+|.+|
T Consensus 173 ~-~~tG~~~p---~~~i~~~~~~~g~~~ivDa~q~~---g~~~---id----~~~~-------~~D~~~~s~hK~~gp~G 231 (408)
T d1t3ia_ 173 S-NTLGCVNP---AEEIAQLAHQAGAKVLVDACQSA---PHYP---LD----VQLI-------DCDWLVASGHKMCAPTG 231 (408)
T ss_dssp C-TTTCBBCC---HHHHHHHHHHTTCEEEEECTTTT---TTSC---CC----HHHH-------TCSEEEEEGGGTTSCTT
T ss_pred c-ccccccCc---HHHHhhhhhccCceeeeccceec---cccc---cc----cccc-------CCceEEeccccccCCCC
Confidence 6 99999999 77888889999999999988742 1111 11 1111 35689999999876555
Q ss_pred ceeeEEEeCcHHHHHHH
Q 043334 836 LKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 836 lRiG~lv~~~~~li~~l 852 (903)
+|+++..++ +...+
T Consensus 232 --~g~l~v~~~-~~~~~ 245 (408)
T d1t3ia_ 232 --IGFLYGKEE-ILEAM 245 (408)
T ss_dssp --CEEEEECHH-HHHHS
T ss_pred --ccccccchh-hhhcC
Confidence 799999987 65543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=6.4e-11 Score=127.74 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=83.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+++++|||+|||+|.+++.+|+. ++.+|+|+|.|+. ...++++++.|++ .++++++++|+.++
T Consensus 32 ~~~~~VLDiGcG~G~ls~~aa~~-Ga~~V~avd~s~~-~~~a~~~~~~n~~---------------~~~v~~~~~~~~~~ 94 (316)
T d1oria_ 32 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSI-SDYAVKIVKANKL---------------DHVVTIIKGKVEEV 94 (316)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTT-HHHHHHHHHHTTC---------------TTTEEEEESCTTTC
T ss_pred CCcCEEEEEecCCcHHHHHHHHh-CCCEEEEEcCcHH-HhhhhhHHHHhCC---------------ccccceEeccHHHc
Confidence 46899999999999999998885 4568999999975 5778888888887 36899999999998
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
..+. ++||+|++++........ ..+..++....++|||||.++-
T Consensus 95 ~~~~-~~~D~ivs~~~~~~l~~e-----------------------------------~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 95 ELPV-EKVDIIISEWMGYCLFYE-----------------------------------SMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp CCSS-SCEEEEEECCCBBTBTBT-----------------------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred cccc-ceeEEEeeeeeeeeeccH-----------------------------------HHHHHHHHHHHhcCCCCeEEEe
Confidence 6553 389999986443321110 1133678889999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=7.8e-11 Score=127.75 Aligned_cols=106 Identities=18% Similarity=0.289 Sum_probs=82.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||+|.+++.+|+. ++.+|+|+|.|+ +++.|+++.+.++. .++++++++|+.+.
T Consensus 37 ~~~~~VLDlGcGtG~ls~~aa~~-Ga~~V~avd~s~-~~~~a~~~~~~~~~---------------~~~i~~i~~~~~~l 99 (328)
T d1g6q1_ 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSS-IIEMAKELVELNGF---------------SDKITLLRGKLEDV 99 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESST-HHHHHHHHHHHTTC---------------TTTEEEEESCTTTS
T ss_pred CCcCEEEEeCCCCCHHHHHHHHh-CCCEEEEEeCCH-HHHHHHHHHHHhCc---------------cccceEEEeehhhc
Confidence 36799999999999999988875 456999999997 77899999988887 36899999999988
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..+. .+||+|++++........ .....++....++|||||+++
T Consensus 100 ~~~~-~~~D~i~se~~~~~~~~e-----------------------------------~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 100 HLPF-PKVDIIISEWMGYFLLYE-----------------------------------SMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCSS-SCEEEEEECCCBTTBSTT-----------------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred cCcc-cceeEEEEEecceeeccc-----------------------------------hhHHHHHHHHHhccCCCeEEE
Confidence 6543 389999986544321111 112256778889999999986
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.14 E-value=2.2e-09 Score=117.80 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=130.7
Q ss_pred HHHHHHHHHccCCC-CCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCCeEEEcCCCcHHHHH
Q 043334 634 KAAIFESFARQNMS-ESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGGTLCFPAGSNGNYVS 711 (903)
Q Consensus 634 ~~al~~al~~y~~~-~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD~Vlv~~P~y~~~~~ 711 (903)
++++.+.+++...+ .|. ..+.+++.+++++|.+.. +.+.+| +.|+.+++.++ +++||+|++|..+|+....
T Consensus 4 ~~~~~~~l~~~~~~~~G~--~~~~fE~~~~~~~~~~~~----~~~~Sg-T~Al~lal~~l~~~~gdeVi~p~~t~~a~~~ 76 (374)
T d1o69a_ 4 LKYIEEVFKSNYIAPLGE--FVNRFEQSVKDYSKSENA----LALNSA-TAALHLALRVAGVKQDDIVLASSFTFIASVA 76 (374)
T ss_dssp HHHHHHHHHHTTTSCTTH--HHHHHHHHHHHHHCCSEE----EEESCH-HHHHHHHHHHTTCCTTCEEEEESSSCGGGTH
T ss_pred HHHHHHHHhcCCcCCCCH--HHHHHHHHHHHHHCcCeE----EEeCCH-HHHHHHHHHHcCCCCcCEEEeCCcchHhhHH
Confidence 45666667665443 353 466788888888887643 555555 55555667776 8899999999999999999
Q ss_pred HHHHcCCEEEEecCCCCCCcccCHHHH--HHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCC
Q 043334 712 AARFLKANIVNIPTESEVGFKMTEKTL--VTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAF 789 (903)
Q Consensus 712 ~~~~~G~~vv~v~~~~~~~f~ld~~~L--~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY 789 (903)
++...|++++.+++++ +.+.++.+.. ....++++ +++++++.. |.... +++|.++|+++|+.||+|.+.
T Consensus 77 ~~~~~g~~pv~~Di~~-~~~~~~~~~~~~~~~~~~~~-~aii~~~~~----G~~~d---~~~i~~~~~~~~i~vIED~a~ 147 (374)
T d1o69a_ 77 PICYLKAKPVFIDCDE-TYNIDVDLLKLAIKECEKKP-KALILTHLY----GNAAK---MDEIVEICKENDIVLIEDAAE 147 (374)
T ss_dssp HHHHTTCEEEEECBCT-TSSBCHHHHHHHHHHCSSCC-CEEEEECGG----GCCCC---HHHHHHHHHHTTCEEEEECTT
T ss_pred HHhhccceeEeccccc-ccccccccccccchhccccc-ccccccccc----cchhh---hHHHHHHhhccCcchhhhhhh
Confidence 9999999999999985 3334444433 34555555 477777555 77766 888899999999999999998
Q ss_pred CCC-ccCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 790 SGL-EFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 790 ~~l-~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
+.. .|.+.. +. . ...+.+.|| +|.++..| -|.+++.++++.+.+..+.
T Consensus 148 a~g~~~~~~~---------~G---~-----~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~ 198 (374)
T d1o69a_ 148 ALGSFYKNKA---------LG---T-----FGEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYS 198 (374)
T ss_dssp CTTCEETTEE---------TT---S-----SSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHT
T ss_pred hhcceECCee---------cC---C-----CCceEEEeccCcccccccc--ceeehhhhHHHHHhhcccc
Confidence 642 222221 11 1 124556666 58776443 5899999888888887553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.1e-10 Score=125.58 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=81.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
.+++++|||+|||+|.+++.+|+. ++.+|+|+|.|+.|.. ++++...++. .+++.++++|+.+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~-Ga~~V~aid~s~~~~~-a~~~~~~~~~---------------~~~i~~~~~~~~~ 95 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQ-AMDIIRLNKL---------------EDTITLIKGKIEE 95 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHH-HHHHHHHTTC---------------TTTEEEEESCTTT
T ss_pred cCCcCEEEEECCCCCHHHHHHHHc-CCCEEEEEeCHHHHHH-HHHHHHHhCC---------------CccceEEEeeHHH
Confidence 357899999999999999998886 3569999999998765 5556666665 3689999999999
Q ss_pred cccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 108 YCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
+..+. .+||+|++++......... .+..++....++|||||+++
T Consensus 96 l~~~~-~~~D~Ivse~~~~~~~~e~-----------------------------------~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 96 VHLPV-EKVDVIISEWMGYFLLFES-----------------------------------MLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp SCCSC-SCEEEEEECCCBTTBTTTC-----------------------------------HHHHHHHHHHHHEEEEEEEE
T ss_pred hcCcc-ccceEEEEeeeeeeccccc-----------------------------------ccHHHHHHHHhcCCCCcEEe
Confidence 86553 3899999876555322111 12256777788999999987
Q ss_pred E
Q 043334 188 F 188 (903)
Q Consensus 188 ~ 188 (903)
-
T Consensus 140 p 140 (311)
T d2fyta1 140 P 140 (311)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.13 E-value=2.3e-10 Score=116.14 Aligned_cols=160 Identities=16% Similarity=0.213 Sum_probs=99.3
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCC
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQP 85 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~ 85 (903)
||.|.+-+..+++.+.. .++.+|||.|||+|.+...+.+..+. .+++|+|+++.+++.+
T Consensus 1 v~TP~~i~~~m~~l~~~-----~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------------- 60 (223)
T d2ih2a1 1 VETPPEVVDFMVSLAEA-----PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------- 60 (223)
T ss_dssp CCCCHHHHHHHHHHCCC-----CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------
T ss_pred CCCCHHHHHHHHHhcCC-----CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------
Confidence 68897555555554432 25789999999999999988876654 5799999998765432
Q ss_pred cchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccccccc
Q 043334 86 IYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFG 165 (903)
Q Consensus 86 ~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g 165 (903)
.+..++++|....... .+||+|++||||....................+ . ... ......
T Consensus 61 ----------~~~~~~~~~~~~~~~~--~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~-~------~~~--~~~~~~ 119 (223)
T d2ih2a1 61 ----------PWAEGILADFLLWEPG--EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLY-K------KAF--STWKGK 119 (223)
T ss_dssp ----------TTEEEEESCGGGCCCS--SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHH-H------HHC--TTCCTT
T ss_pred ----------ccceeeeeehhccccc--cccceecccCccccccccccccchhhhhhhhhh-h------hcc--ccCCCc
Confidence 2467788998876544 389999999999754322211110000000000 0 000 001122
Q ss_pred HHHHHHHHHHHhhcccCCcEEEEEeCCCC----cHHHHHHHHHHCC
Q 043334 166 LGLIARAVEEGIGVIKPSGIMIFNMGGRP----GQGVCKRLFERRG 207 (903)
Q Consensus 166 ~~~~~~~l~~~~~~LkpgG~ll~~~~~~~----~~~~l~~ll~~~g 207 (903)
.+.+..+++.+.+.|+|||++.+.++... ....+++.+.+.+
T Consensus 120 ~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~~ 165 (223)
T d2ih2a1 120 YNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLAREG 165 (223)
T ss_dssp CCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhcC
Confidence 33456789999999999999999775321 2334455555544
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.12 E-value=1.1e-09 Score=116.21 Aligned_cols=170 Identities=13% Similarity=0.067 Sum_probs=132.9
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhcc
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCIL 694 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~ 694 (903)
++.++|+ ++|..++.|++++++.++...+...+|..+..+++++.+++.+|.+. .+++|+|++++...++...+.
T Consensus 2 ~~~~~f~-s~n~~g~~P~v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~----~v~f~~sGt~An~~a~~~~~~ 76 (345)
T d1v72a1 2 PPALGFS-SDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDV----EVFLVPTGTAANALCLSAMTP 76 (345)
T ss_dssp CCCCBCS-CGGGCCCCHHHHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCC----EEEEESCHHHHHHHHHHTSCC
T ss_pred CCCcCcC-CCCCCCCCHHHHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCc----EEEECCchHHHHHHHHHHHHh
Confidence 3567777 35566778899999988765555566777888899999999999653 599999999999999999999
Q ss_pred CCCeEEEcCCCcHHHHH---HHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCC------CcEEEEECCCCCCcccCCC
Q 043334 695 EGGTLCFPAGSNGNYVS---AARFLKANIVNIPTESEVGFKMTEKTLVTILETVK------KPWVYISGPTINPTGLLYS 765 (903)
Q Consensus 695 pGD~Vlv~~P~y~~~~~---~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~------~~~vil~~P~~NPTG~v~s 765 (903)
+++.+++....+..... .....+..+..++... +...+++.+++.+.... ...++..++. |++|...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (345)
T d1v72a1 77 PWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGP--AAKLDIVRLRERTREKVGDVHTTQPACVSITQA-TEVGSIYT 153 (345)
T ss_dssp TTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG--GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS-CTTSCCCC
T ss_pred cCCccccccccceeeechhhHHHhcCcccccccccc--cccccHHHhhhhhcccccccccccceeeeeecc-cccccccc
Confidence 99988888777666443 3355677777765543 45589999999887542 2256666666 99999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCC
Q 043334 766 NKEIENILTVCAKYGARVVIDTAFSGL 792 (903)
Q Consensus 766 ~eel~eI~~ia~k~~i~VI~DeaY~~l 792 (903)
.++++++.++|+++|++++.|+++...
T Consensus 154 ~~~~~~i~~~~~~~~~~~~~D~~~~~~ 180 (345)
T d1v72a1 154 LDEIEAIGDVCKSSSLGLHMDGSRFAN 180 (345)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred chhhhhHHHHHHhcCceeeecccccce
Confidence 999999999999999999999998543
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.12 E-value=1.7e-09 Score=116.87 Aligned_cols=182 Identities=12% Similarity=0.047 Sum_probs=129.1
Q ss_pred HHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCCCc
Q 043334 656 SIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEVGF 731 (903)
Q Consensus 656 ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~~f 731 (903)
++++.++...|.. ..++++.+++|+..++.+++++||+|+++++.|.+.... ++..|.++..++..
T Consensus 2 aLE~~la~Leg~~-----~a~~~sSGMaAi~~~l~~ll~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~----- 71 (331)
T d1pffa_ 2 ALEGKIAKLEHAE-----ACAATASGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----- 71 (331)
T ss_dssp HHHHHHHHHHTCS-----EEEEESSHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----
T ss_pred HHHHHHHHHhCCC-----eEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc-----
Confidence 4666677666643 466777888899888999999999999999999886555 46789999998763
Q ss_pred ccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHH-HhCCcEEEEecCCCCCccCCCCCCCCchhhhhhh
Q 043334 732 KMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVC-AKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSK 810 (903)
Q Consensus 732 ~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia-~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~ 810 (903)
|++.+++++++++ ++|++.+|+ ||+..+.. ++++++++ +++|+++|+|+.|....+.. -
T Consensus 72 --d~~~~~~~i~~~t-~~i~~Es~~-np~~~v~d---~~~~~~~~a~~~~~~~vVDnT~atp~~~~-------------p 131 (331)
T d1pffa_ 72 --VPGNIEKHLKPNT-RIVYFETPA-NPTLKVID---IEDAVKQARKQKDILVIVDNTFASPILTN-------------P 131 (331)
T ss_dssp --STTHHHHTCCTTE-EEEEEESSC-TTTCCCCC---HHHHHHHHTTSSSCEEEEECTTTHHHHCC-------------G
T ss_pred --chhhHhhhccccc-ceeeeeccc-cccccccc---chhhhhhhhcccCceEEeecccccccccc-------------c
Confidence 5788999998887 599999999 99999988 66666654 67899999999984211110 0
Q ss_pred hccCCCCCCceEEEccCchhcccccceee-EEEeCcHHHHHHHHh--CCC--CCCCcHHHHHHHHHHH
Q 043334 811 LYSSTNSSFNVSLLGGLSLKMLTGALKFG-FLVLNHPQLVDAFSS--FPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 811 l~~~~~~~~~vI~l~S~SK~~g~~GlRiG-~lv~~~~~li~~l~~--~~~--~~~~s~~~Q~aa~~~L 873 (903)
++ . +-.|+++|++|.++..|--+| .++++++ ....... ... -..+++...+.+..-|
T Consensus 132 l~-~----GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~-~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl 193 (331)
T d1pffa_ 132 LD-L----GVDIVVHSATKYINGHTDVVAGLVCSRAD-IIAKVKSQGIKDITGAIISPHDAWLITRGT 193 (331)
T ss_dssp GG-G----TCSEEEEETTTTTSSSSSCCCEEEEECHH-HHHHHHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred cc-c----CCCEEEecchhhcCCCCcccccccccccc-chhhhhhhhhhhccCCCCCHHHHHHHHHHH
Confidence 11 1 357999999999976565554 5666555 4444322 333 3345555555555444
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.11 E-value=1.8e-10 Score=117.93 Aligned_cols=129 Identities=15% Similarity=0.080 Sum_probs=92.7
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW-LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~-~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
+.+|.+|||+|||+|..+..+|+.. +..+|+|+|+++.|++.++++++.. .++..+..|..
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~------------------~~~~~i~~d~~ 132 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER------------------RNIVPILGDAT 132 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC------------------TTEEEEECCTT
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc------------------CCceEEEEECC
Confidence 4689999999999999999999987 4579999999999999999887544 35777788875
Q ss_pred cccc--CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 107 AYCR--DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 107 ~~~~--~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.... .....+|+|+.+.++.. ....+++++.+.|||||
T Consensus 133 ~~~~~~~~~~~vD~i~~d~~~~~----------------------------------------~~~~~l~~~~~~LkpgG 172 (227)
T d1g8aa_ 133 KPEEYRALVPKVDVIFEDVAQPT----------------------------------------QAKILIDNAEVYLKRGG 172 (227)
T ss_dssp CGGGGTTTCCCEEEEEECCCSTT----------------------------------------HHHHHHHHHHHHEEEEE
T ss_pred CcccccccccceEEEEEEccccc----------------------------------------hHHHHHHHHHHhcccCC
Confidence 5432 12247999987654431 01267999999999999
Q ss_pred EEEEEeC-----CCCc-HHHH--HHHHHHCCCeEEEEE
Q 043334 185 IMIFNMG-----GRPG-QGVC--KRLFERRGFRVDKLW 214 (903)
Q Consensus 185 ~ll~~~~-----~~~~-~~~l--~~ll~~~gf~~~~~~ 214 (903)
.+++... .... .... .+.+.+.||++.+..
T Consensus 173 ~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~i 210 (227)
T d1g8aa_ 173 YGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERL 210 (227)
T ss_dssp EEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred eEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 9988532 1112 2211 123446689987763
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.11 E-value=1.4e-10 Score=118.59 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=61.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|+++..+++. ..+|+++|+++++++.|++|.... .++.++.+|....
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~~~------------------~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLSYY------------------NNIKLILGDGTLG 128 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTC------------------SSEEEEESCGGGC
T ss_pred cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHhcc------------------cccccccCchhhc
Confidence 46789999999999999999987 579999999999999999887432 4899999998876
Q ss_pred ccCCCCceeEEEEC
Q 043334 109 CRDHDIQLERIVGC 122 (903)
Q Consensus 109 ~~~~~~~fD~Iv~N 122 (903)
.+.. ++||+|+.+
T Consensus 129 ~~~~-~pfD~Iiv~ 141 (224)
T d1vbfa_ 129 YEEE-KPYDRVVVW 141 (224)
T ss_dssp CGGG-CCEEEEEES
T ss_pred chhh-hhHHHHHhh
Confidence 5443 389999853
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.09 E-value=1.3e-09 Score=120.02 Aligned_cols=191 Identities=13% Similarity=0.093 Sum_probs=134.2
Q ss_pred CCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHH----HcCCEEE
Q 043334 646 MSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAAR----FLKANIV 721 (903)
Q Consensus 646 ~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~----~~G~~vv 721 (903)
+.+...+-++.+++.++...|.+. -+++.+| ++++..+ ..++.+||.|++....|.+....++ ..|.++.
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~~----a~~~sSG-maAi~~~-l~~l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi~~~ 122 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQY----GLAFSSG-SATTATI-LQSLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETS 122 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSE----EEEESCH-HHHHHHH-HHTSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCE
T ss_pred eeCCCChHHHHHHHHHHHHhCCce----EEEecCc-hhHHHhh-hhcccCCCeeeeeeeecccchhhhhhhhhcccceeE
Confidence 333334568889999998877542 2555555 7788765 5677899999999999998877764 3577766
Q ss_pred EecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHH----hCCcEEEEecCCCCCccCCC
Q 043334 722 NIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCA----KYGARVVIDTAFSGLEFNYE 797 (903)
Q Consensus 722 ~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~----k~~i~VI~DeaY~~l~f~~~ 797 (903)
.++ .+.+++++++++++ ++|++-+|. |||..+.+ +++|+++|+ ++|+++|+|+.|..-.+..
T Consensus 123 ~~~--------~~~~~~~~~i~~~t-~lv~~Esps-NP~l~v~D---i~~ia~~a~~~~~~~g~~lvVDnT~atP~~~~- 188 (393)
T d1n8pa_ 123 FTN--------DLLNDLPQLIKENT-KLVWIETPT-NPTLKVTD---IQKVADLIKKHAAGQDVILVVDNTFLSPYISN- 188 (393)
T ss_dssp EES--------SHHHHHHHHSCSSE-EEEEECSSC-TTTCCCCC---HHHHHHHHHHHTTTTTCEEEEECTTTHHHHCC-
T ss_pred Eee--------cchHHHHHHhhhhc-ceeEecCcc-hhhhhccc---hhhhhhhhhhhcccCCceEEEecCccCcccCC-
Confidence 654 23578999998888 599999999 99999998 666776666 7899999999994211110
Q ss_pred CCCCCchhhhhhhhccCCCCCCceEEEccCchhccccc-ceeeEEEeCcHHHHHHHHhCCC--CCCCcHHHHHHHHHHH
Q 043334 798 GWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGA-LKFGFLVLNHPQLVDAFSSFPG--LSKPHSTVRYAIKKLL 873 (903)
Q Consensus 798 ~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~G-lRiG~lv~~~~~li~~l~~~~~--~~~~s~~~Q~aa~~~L 873 (903)
+ +. . +-.|++.|++|.++..| .-.|.++..++++.+.+..... -..+++...+.+..-|
T Consensus 189 --------P-l~----~----GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl 250 (393)
T d1n8pa_ 189 --------P-LN----F----GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGL 250 (393)
T ss_dssp --------G-GG----G----TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred --------c-hh----h----CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCC
Confidence 1 11 1 35799999999996544 4456777776657777776543 3345555555555555
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.8e-10 Score=119.32 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=93.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccC--------------CCCcchhhhccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEK--------------GQPIYDAEKKTL 94 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~--------------~~~~~~~~~~~~ 94 (903)
.++.+|||+|||+|.+++..+... ..+|+|+|+|+.|++.+++++......-. .......+...-
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 478899999999998887666554 45899999999999999988754321000 000000000000
Q ss_pred CCcEEEEEcccccccc-----CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHH
Q 043334 95 LDRVEFHESDLLAYCR-----DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLI 169 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~-----~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~ 169 (903)
.........|+..... ...++||+|++. . . .++. ....+.+
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~----~------~----l~~i--------------------~~~~~~~ 177 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSA----F------C----LEAV--------------------SPDLASF 177 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEE----S------C----HHHH--------------------CSSHHHH
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeH----H------H----HHHH--------------------ccCHHHH
Confidence 1112345566644321 123479999852 0 0 0110 0112335
Q ss_pred HHHHHHHhhcccCCcEEEEEe---------------CCCCcHHHHHHHHHHCCCeEEEEE
Q 043334 170 ARAVEEGIGVIKPSGIMIFNM---------------GGRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 170 ~~~l~~~~~~LkpgG~ll~~~---------------~~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.+++++++++|||||.+++.. ......+.+++++++.||+++...
T Consensus 178 ~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 178 QRALDHITTLLRPGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 689999999999999998811 123477888999999999987764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.05 E-value=4.1e-10 Score=114.25 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||||+.+..+++.. +.+|+++|+++++++.|++|+...++ +|+.++++|..+.
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~----------------~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGV----------------KNVHVILGDGSKG 139 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEESCGGGC
T ss_pred CccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCC----------------ceeEEEECccccC
Confidence 367899999999999999999876 46899999999999999999998887 5899999999886
Q ss_pred ccCCCCceeEEEE
Q 043334 109 CRDHDIQLERIVG 121 (903)
Q Consensus 109 ~~~~~~~fD~Iv~ 121 (903)
.... ++||.|+.
T Consensus 140 ~~~~-~pfD~Iiv 151 (215)
T d1jg1a_ 140 FPPK-APYDVIIV 151 (215)
T ss_dssp CGGG-CCEEEEEE
T ss_pred Cccc-CcceeEEe
Confidence 5544 38999984
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.04 E-value=1.3e-09 Score=122.26 Aligned_cols=190 Identities=15% Similarity=0.238 Sum_probs=119.2
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC-------------CEEEEEeCCHHHHHHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP-------------SKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~-------------~~V~giDis~~al~~A~~n 73 (903)
+|+|++-...+.+.+.. ..+.+|+|.+||+|.+.+.+.+.... ..++|+|+++.+..+|+.|
T Consensus 144 f~TP~~Iv~~mv~ll~~-----~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n 218 (425)
T d2okca1 144 YFTPRPLIQAMVDCINP-----QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMN 218 (425)
T ss_dssp GCCCHHHHHHHHHHHCC-----CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred hccchhhhHhhheeccC-----cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhh
Confidence 68887555444444432 24689999999999999998776532 3499999999999999999
Q ss_pred HHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccc
Q 043334 74 LYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNY 153 (903)
Q Consensus 74 ~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 153 (903)
+..++.. ..+..+..+|....... .+||+|++||||........... ...+
T Consensus 219 ~~l~g~~--------------~~~~~i~~~d~l~~~~~--~~fD~Ii~NPPfg~~~~~~~~~~------~~~~------- 269 (425)
T d2okca1 219 LYLHGIG--------------TDRSPIVCEDSLEKEPS--TLVDVILANPPFGTRPAGSVDIN------RPDF------- 269 (425)
T ss_dssp HHHTTCC--------------SSCCSEEECCTTTSCCS--SCEEEEEECCCSSCCCTTCCCCC------CTTS-------
T ss_pred hhhcCCc--------------cccceeecCchhhhhcc--cccceEEecCCCCCCccccchhh------hhhc-------
Confidence 9988763 13456778888776443 38999999999964332111000 0000
Q ss_pred ccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCC----CC-cHHHHHHHHHHCCCeEEEEEehhhhccCCCcccC
Q 043334 154 CALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGG----RP-GQGVCKRLFERRGFRVDKLWQTKILQASEPFFAS 228 (903)
Q Consensus 154 ~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~----~~-~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~ 228 (903)
+. + .......|+..+.+.|++||++.+.++. .. ....+++.+-+.+ .+..++ ......|..
T Consensus 270 -----~~-~--~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~-~i~aIi-----~LP~~~F~~ 335 (425)
T d2okca1 270 -----YV-E--TKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF-NLHTIL-----RLPTGIFYA 335 (425)
T ss_dssp -----SS-C--CSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE-EEEEEE-----ECCSSSSSS
T ss_pred -----cc-c--cccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhhhHHHHHHHHHHhc-chhHhh-----cCCcccccC
Confidence 00 0 0111336899999999999999987662 11 2234455554443 222221 223345544
Q ss_pred CCCcc-eeeeeeccCCcc
Q 043334 229 DTDIS-ALVEIEKNSPHR 245 (903)
Q Consensus 229 ~~~i~-~l~~~e~~~~~~ 245 (903)
+.+. .++-+.++.+.+
T Consensus 336 -t~v~t~Ilil~K~k~~~ 352 (425)
T d2okca1 336 -QGVKANVLFFSKGQPTK 352 (425)
T ss_dssp -TTCCEEEEEEEESSCCS
T ss_pred -CCCCeEEEEEECCCCCC
Confidence 5554 566777765443
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.04 E-value=9.7e-09 Score=112.55 Aligned_cols=191 Identities=13% Similarity=0.105 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh-ccCCC--eEEEcCCCc
Q 043334 630 PSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC-ILEGG--TLCFPAGSN 706 (903)
Q Consensus 630 p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l-~~pGD--~Vlv~~P~y 706 (903)
.++-++++.+.+.......| +..+.+++.+++++|.+. .+.+++++.|+.+++.++ +.+|| +|++|.-+|
T Consensus 11 ~~~~~~~v~~~l~~~~~~~G--~~v~~fE~~~~~~~g~k~-----ai~~~Sgt~Al~~al~al~~~~~~~~eVi~p~~t~ 83 (371)
T d2fnua1 11 DKEDKKAVLEVLNSKQLTQG--KRSLLFEEALCEFLGVKH-----ALVFNSATSALLTLYRNFSEFSADRNEIITTPISF 83 (371)
T ss_dssp CHHHHHHHHHHHTSSCCSSS--HHHHHHHHHHHHHHTCSE-----EEEESCHHHHHHHHHHHSSCCCTTSCEEEECSSSC
T ss_pred CHHHHHHHHHHHcCCCccCC--HHHHHHHHHHHHHHCcCe-----EEEEecHHHHHHHHHHHhcccCCCCCeeecccccc
Confidence 35557788888876655666 356778888999888764 445555556666667776 44454 899999999
Q ss_pred HHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEe
Q 043334 707 GNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVID 786 (903)
Q Consensus 707 ~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~D 786 (903)
+....++...|++++.++++.+ .+ ++.+.+++.++++++ +|++++ .-|...+ +++|.++|+++++.||+|
T Consensus 84 ~a~~~ai~~~G~~pv~vDi~~~-~~-~~~~~~~~~~~~~t~-avi~vh----~~G~~~~---~~~i~~~~~~~~i~lIED 153 (371)
T d2fnua1 84 VATANMLLESGYTPVFAGIKND-GN-IDELALEKLINERTK-AIVSVD----YAGKSVE---VESVQKLCKKHSLSFLSD 153 (371)
T ss_dssp THHHHHHHHTTCEEEECCBCTT-SS-BCGGGSGGGCCTTEE-EEEEEC----GGGCCCC---HHHHHHHHHHHTCEEEEE
T ss_pred cccceeeeccCccccccccccc-cc-ccchhhhhhccchhh-cccccc----ccccccc---cccccccccccchhhccc
Confidence 9999999999999999999864 33 566778888877774 777664 4488877 778888999999999999
Q ss_pred cCCCCCc-cCCCCCCCCchhhhhhhhccCCCCCCceEEEccC--chhcccccceeeEEEeCcHHHHHHHHhCC
Q 043334 787 TAFSGLE-FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGL--SLKMLTGALKFGFLVLNHPQLVDAFSSFP 856 (903)
Q Consensus 787 eaY~~l~-f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~--SK~~g~~GlRiG~lv~~~~~li~~l~~~~ 856 (903)
.+.+... +.+... . . ...+.+.|| +|.++. | --|.++++++++.+.++...
T Consensus 154 aaqa~Ga~~~~~~~---------G---~-----~g~~~~~Sf~~~K~l~~-g-~GG~i~t~~~~~~~~~~~~~ 207 (371)
T d2fnua1 154 SSHALGSEYQNKKV---------G---G-----FALASVFSFHAIKPITT-A-EGGAVVTNDSELHEKMKLFR 207 (371)
T ss_dssp CTTCTTCEETTEET---------T---S-----SSSEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHT
T ss_pred hhhccCceeccccC---------C---c-----ccccccccccccccccc-c-cceEEEeechhhhhhccccc
Confidence 9986532 222211 1 1 123444555 888764 3 37899999888888887654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5.7e-10 Score=117.75 Aligned_cols=108 Identities=12% Similarity=0.028 Sum_probs=73.8
Q ss_pred CCeEEEeCCccCHHHHHHHHHh----CC--CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCC--cEEEEE
Q 043334 31 DKTVAELGCGNGWITIAIAEKW----LP--SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLD--RVEFHE 102 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~----~~--~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~--~v~~~~ 102 (903)
+.+|||+|||+|.++..+++.+ ++ .+++|+|+|+.|++.|++++..... .. ++.+..
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~---------------~~~~~~~~~~ 105 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN---------------LENVKFAWHK 105 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS---------------CTTEEEEEEC
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc---------------cccccccchh
Confidence 3479999999999988876653 33 3689999999999999998754321 12 345666
Q ss_pred cccccc-----ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 103 SDLLAY-----CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 103 gDl~~~-----~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
.++.++ .....++||+|++.--....+ ....++++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~--------------------------------------d~~~~l~~l~ 147 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVK--------------------------------------DIPATLKFFH 147 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCS--------------------------------------CHHHHHHHHH
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecCC--------------------------------------CHHHHHHHHH
Confidence 665433 112234899998632111110 0237899999
Q ss_pred hcccCCcEEEEEeC
Q 043334 178 GVIKPSGIMIFNMG 191 (903)
Q Consensus 178 ~~LkpgG~ll~~~~ 191 (903)
++|+|||.+++...
T Consensus 148 ~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 148 SLLGTNAKMLIIVV 161 (280)
T ss_dssp HTEEEEEEEEEEEE
T ss_pred hhCCCCCEEEEEEe
Confidence 99999999988554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=2e-09 Score=107.14 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=100.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++..++|++||+|..+..+++.+|+.+|+|+|.+++|++.|++++...+ +++.++++++.+..
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-----------------~r~~~~~~~f~~~~ 85 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-----------------DRVSLFKVSYREAD 85 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-----------------TTEEEEECCGGGHH
T ss_pred CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-----------------ccccchhHHHhhHH
Confidence 6789999999999999999999999999999999999999999886543 58999999886642
Q ss_pred ----cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcE
Q 043334 110 ----RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGI 185 (903)
Q Consensus 110 ----~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ 185 (903)
....++||.|+.+.++.. . .+. +...++...+..+..+.++|+|||.
T Consensus 86 ~~~~~~~~~~vdgIl~DlGvSs------~--Qld---------------------~~~r~~~~~~~~L~~a~~~Lk~gG~ 136 (192)
T d1m6ya2 86 FLLKTLGIEKVDGILMDLGVST------Y--QLK---------------------GENRELENLKEFLKKAEDLLNPGGR 136 (192)
T ss_dssp HHHHHTTCSCEEEEEEECSCCH------H--HHH---------------------TSHTHHHHHHHHHHHGGGGEEEEEE
T ss_pred HHHHHcCCCCcceeeeccchhH------h--hhh---------------------hhhccchhHHHHHHHHHHhcCCCCe
Confidence 111248999997655531 0 000 1345667788999999999999999
Q ss_pred EEEEeCCCCcHHHHHHHHHHC
Q 043334 186 MIFNMGGRPGQGVCKRLFERR 206 (903)
Q Consensus 186 ll~~~~~~~~~~~l~~ll~~~ 206 (903)
+++..........+++.+++.
T Consensus 137 l~ii~f~s~Edr~vk~~f~~~ 157 (192)
T d1m6ya2 137 IVVISFHSLEDRIVKETFRNS 157 (192)
T ss_dssp EEEEESSHHHHHHHHHHHHHC
T ss_pred eeeeccccHHHHHHHHHHhhc
Confidence 988665544445556666654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.98 E-value=8.2e-10 Score=112.74 Aligned_cols=82 Identities=15% Similarity=0.162 Sum_probs=65.1
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHhC------CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEE
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKWL------PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFH 101 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~~------~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~ 101 (903)
+.++.+|||+|||||+.+..+++..+ ..+|+++|+++++++.|++|+...++. .....++.+.
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-----------~~~~~nv~~~ 146 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS-----------MLDSGQLLIV 146 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH-----------HHHHTSEEEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh-----------hcCccEEEEE
Confidence 44789999999999999999988753 358999999999999999998654331 0012589999
Q ss_pred EccccccccCCCCceeEEEE
Q 043334 102 ESDLLAYCRDHDIQLERIVG 121 (903)
Q Consensus 102 ~gDl~~~~~~~~~~fD~Iv~ 121 (903)
++|..+...... +||.|+.
T Consensus 147 ~~d~~~~~~~~~-~fD~Iiv 165 (223)
T d1r18a_ 147 EGDGRKGYPPNA-PYNAIHV 165 (223)
T ss_dssp ESCGGGCCGGGC-SEEEEEE
T ss_pred eccccccccccc-ceeeEEE
Confidence 999988765543 8999985
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.96 E-value=1.5e-08 Score=114.40 Aligned_cols=165 Identities=15% Similarity=0.056 Sum_probs=112.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE 695 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p 695 (903)
..|||-.+....+..+...++ .......+|..+...++++.+++.+|.+ .++++++++++...++.+++++
T Consensus 43 ~~id~~sd~~t~~~~~~~~a~----~~~gd~~y~~~~~~~~le~~~a~l~g~~-----~~~~~~sGt~A~~~a~~~~~~~ 113 (465)
T d1ax4a_ 43 VYIDLLTDSGTNAMSDHQWAA----MITGDEAYAGSRNYYDLKDKAKELFNYD-----YIIPAHQGRGAENILFPVLLKY 113 (465)
T ss_dssp CSEECSCSSSCCCEEHHHHHH----HHTCCCCSSSCHHHHHHHHHHHHHHCCC-----EEEEESSHHHHHHHHHHHHHHH
T ss_pred eeeecccccchhhhhHHHHHH----HhhhhhhhccChHHHHHHHHHHHHHCCC-----EEEECCCcHHHHHHHHHHHHHH
Confidence 456765544433334433333 2232233444444455666666777763 6788888888988889998876
Q ss_pred CCe-------EEEcCCCcHHHHHHHHHcCCEEEEecCC--------CCCCcccCHHHHHHHhhcCC---CcEEEEECCCC
Q 043334 696 GGT-------LCFPAGSNGNYVSAARFLKANIVNIPTE--------SEVGFKMTEKTLVTILETVK---KPWVYISGPTI 757 (903)
Q Consensus 696 GD~-------Vlv~~P~y~~~~~~~~~~G~~vv~v~~~--------~~~~f~ld~~~L~~~l~~~~---~~~vil~~P~~ 757 (903)
|+. ++...+.+..+.......|..++.++.. ....+.+|++++++++++.. ...+++..++
T Consensus 114 g~~~~~~~~~~i~~~~h~~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~- 192 (465)
T d1ax4a_ 114 KQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTC- 192 (465)
T ss_dssp HHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSB-
T ss_pred HHhcCCCCCeEEeccchhhhhHHHHHHcCCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeecccc-
Confidence 653 4666777788888889999999877542 12356789999999987532 2244444443
Q ss_pred CCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCC
Q 043334 758 NPT-GLLYSNKEIENILTVCAKYGARVVIDTAFS 790 (903)
Q Consensus 758 NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~ 790 (903)
|.. |.+++.+++++|.++|++||+++|.|+++.
T Consensus 193 ~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~ 226 (465)
T d1ax4a_ 193 NSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 226 (465)
T ss_dssp TTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred ccCceecCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 554 356899999999999999999999999984
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1e-09 Score=118.78 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=81.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|||+|.+++.+|+..+..+++|+|+++.+++.|+++.+..... ......-..+++++++|+.+.
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~-------~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW-------MKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHH-------HHHHTCCCCCEEEEECCTTSH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH-------hhhccccCCceEEEECccccc
Confidence 4678999999999999999999888789999999999999999877543210 000000124799999999887
Q ss_pred ccCCC-CceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 109 CRDHD-IQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 109 ~~~~~-~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
..... ...|+|++|= +.+ . ..+...+.+..+.|||||+++
T Consensus 223 ~~~~~~~~advi~~~~-~~f-------~-------------------------------~~~~~~l~e~~r~LKpGg~iv 263 (328)
T d1nw3a_ 223 EWRERIANTSVIFVNN-FAF-------G-------------------------------PEVDHQLKERFANMKEGGRIV 263 (328)
T ss_dssp HHHHHHHHCSEEEECC-TTT-------C-------------------------------HHHHHHHHHHHTTCCTTCEEE
T ss_pred ccccccCcceEEEEcc-eec-------c-------------------------------hHHHHHHHHHHHhCCCCcEEE
Confidence 43321 1347777541 110 0 112367889999999999998
Q ss_pred EE
Q 043334 188 FN 189 (903)
Q Consensus 188 ~~ 189 (903)
+.
T Consensus 264 ~~ 265 (328)
T d1nw3a_ 264 SS 265 (328)
T ss_dssp ES
T ss_pred Ee
Confidence 73
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.92 E-value=2.6e-09 Score=105.72 Aligned_cols=83 Identities=12% Similarity=0.086 Sum_probs=68.0
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.+.+|||+.||||.+++.++.+ +..+|+.+|.|..+++..++|++..+.+ .....+...|..+..
T Consensus 43 ~~~~vLDlFaGsG~~glEalSR-GA~~v~fVE~~~~a~~~ik~Ni~~l~~~--------------~~~~~~~~~d~~~~l 107 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSR-QAKKVTFLELDKTVANQLKKNLQTLKCS--------------SEQAEVINQSSLDFL 107 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT-TCSEEEEECSCHHHHHHHHHHHHHTTCC--------------TTTEEEECSCHHHHT
T ss_pred ccceEeecccCccceeeeeeee-cceeeEEeecccchhhhHhhHHhhhccc--------------ccccccccccccccc
Confidence 5789999999999999998865 4669999999999999999999887763 235788888877654
Q ss_pred cCC--CCceeEEEECCCCCC
Q 043334 110 RDH--DIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~--~~~fD~Iv~NpPy~~ 127 (903)
... ..+||+|+.+|||..
T Consensus 108 ~~~~~~~~fDlIFlDPPY~~ 127 (183)
T d2ifta1 108 KQPQNQPHFDVVFLDPPFHF 127 (183)
T ss_dssp TSCCSSCCEEEEEECCCSSS
T ss_pred cccccCCcccEEEechhHhh
Confidence 322 337999999999973
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=3.1e-09 Score=122.10 Aligned_cols=189 Identities=12% Similarity=0.125 Sum_probs=112.3
Q ss_pred cccCcchhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC------------------CEEEEEeCCHHHHH
Q 043334 7 IFIPEDWSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP------------------SKVYGLDINPRAIR 68 (903)
Q Consensus 7 vfiP~~w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~------------------~~V~giDis~~al~ 68 (903)
.|+|+.-...+.+.+.. .++.+|+|.+||+|.+.+.+.+.... ..++|+|+++.+.+
T Consensus 146 fyTP~~Iv~~mv~ll~~-----~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 146 YFTPRPLIKTIIHLLKP-----QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp CCCCHHHHHHHHHHHCC-----CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred hccccchhHhhhhcccC-----ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 68887544444444432 24679999999999999887765321 25899999999999
Q ss_pred HHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhh
Q 043334 69 ISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLY 148 (903)
Q Consensus 69 ~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~ 148 (903)
+|+.|+..++.+. .....-.+..+|..........+||+|++||||..............
T Consensus 221 la~~nl~l~~~~~-----------~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~--------- 280 (524)
T d2ar0a1 221 LALMNCLLHDIEG-----------NLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVH--------- 280 (524)
T ss_dssp HHHHHHHTTTCCC-----------BGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSS---------
T ss_pred HHHHHHHhhcccc-----------cccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcc---------
Confidence 9999998887520 01112234455554332222237999999999975433221100000
Q ss_pred hccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEEeCC----CCc-HHHHHHHHHHCCCeEEEEEehhhhccCC
Q 043334 149 SLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFNMGG----RPG-QGVCKRLFERRGFRVDKLWQTKILQASE 223 (903)
Q Consensus 149 ~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~~~~----~~~-~~~l~~ll~~~gf~~~~~~~~~~~~~~~ 223 (903)
..... ...|+..+.+.|+|||++.+.++. ..+ ...+++.+-+.+ .+..++ ....
T Consensus 281 -------------~~~~~--~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~-~i~aII-----~LP~ 339 (524)
T d2ar0a1 281 -------------PTSNK--QLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC-HLHTIL-----RLPT 339 (524)
T ss_dssp -------------CCSCH--HHHHHHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE-EEEEEE-----ECCS
T ss_pred -------------ccccc--cHHHHHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC-CceEEE-----ECCC
Confidence 00011 126899999999999999987652 122 233445554433 233332 2334
Q ss_pred CcccCCCCcc-eeeeeeccC
Q 043334 224 PFFASDTDIS-ALVEIEKNS 242 (903)
Q Consensus 224 ~~~~~~~~i~-~l~~~e~~~ 242 (903)
..|.. +.+. .++-+.|+.
T Consensus 340 ~~F~~-t~i~t~Il~l~K~k 358 (524)
T d2ar0a1 340 GIFYA-QGVKTNVLFFTKGT 358 (524)
T ss_dssp SCSSS-CSCCEEEEEEEEBC
T ss_pred CcCCC-CCCCeEEEEEECCC
Confidence 45554 5554 466667653
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=7.7e-09 Score=113.48 Aligned_cols=199 Identities=12% Similarity=0.110 Sum_probs=140.1
Q ss_pred CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCc
Q 043334 627 LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSN 706 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y 706 (903)
.+.++.+++++....- .+.+....++.+.+++.+++.+|.+.+ . .|++|.|++++++.++..++.+||.+++...++
T Consensus 28 ~~~~~~Vl~am~~~~i-~HRs~~f~~i~~ea~~~l~~llg~~~~-~-~ii~~gsgT~a~~~~i~~l~~~~~~~~~~~~~~ 104 (388)
T d1h0ca_ 28 SNLPPRIMAAGGLQMI-GSMSKDMYQIMDEIKEGIQYVFQTRNP-L-TLVISGSGHCALEAALVNVLEPGDSFLVGANGI 104 (388)
T ss_dssp CCCCHHHHHHHTCCCC-CTTSHHHHHHHHHHHHHHHHHHTCCCS-E-EEEESSCHHHHHHHHHHHHCCSSCCEEECBSSH
T ss_pred CCCCHHHHHHhCcCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCC-c-EEEEcCcHHHHHHHHHHHhhccCCceeeecccc
Confidence 3567888877643210 111222355667788889999998744 2 699999999999999999999999999999888
Q ss_pred HHHHHH--HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 707 GNYVSA--ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 707 ~~~~~~--~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
...... +...+..++.+..+. +...|.+.+++.+...+.+++.+++.+ |.||.+.+ +++|.++|+++|++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~-n~tG~i~p---i~~i~~~~~~~g~~~~ 178 (388)
T d1h0ca_ 105 WGQRAVDIGERIGARVHPMTKDP--GGHYTLQEVEEGLAQHKPVLLFLTHGE-SSTGVLQP---LDGFGELCHRYKCLLL 178 (388)
T ss_dssp HHHHHHHHHHHHC--CBCCBCCT--TCCCCHHHHHHHHHHHCCSEEEEESEE-TTTTEECC---CTTHHHHHHTTTCEEE
T ss_pred eeeeeccccccccccccccccCC--ccccchHHHHHHhccCCcceEEEeeee-eccccccC---HHHHHHHhhcccccce
Confidence 765443 456677777776654 334788888776655444699999998 99999998 8889999999999999
Q ss_pred EecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH
Q 043334 785 IDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 785 ~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~ 853 (903)
+|.+.+-... +. .++.. +..+++.|.-|.++.|+ -+|+++.... .++.+.
T Consensus 179 vD~~qs~g~~---~~----------d~~~~----~~D~~~~s~~K~~~gp~-g~~~~~~~~~-~~~~~~ 228 (388)
T d1h0ca_ 179 VDSVASLGGT---PL----------YMDRQ----GIDILYSGSQKALNAPP-GTSLISFSDK-AKKKMY 228 (388)
T ss_dssp EECTTTTTTS---CC----------CTTTT----TCSEEEEESSSTTCCCT-TCEEEEECHH-HHHHHT
T ss_pred eccccccccc---cc----------ccccc----ccceecccccccccCCC-ceEEEeecHH-HHHhhh
Confidence 9998742211 10 01111 35678888899886544 3577777766 665554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=6.9e-09 Score=113.32 Aligned_cols=143 Identities=17% Similarity=0.263 Sum_probs=102.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+.||+|.+++.||+. ..+|+|+|+++.+++.|++|++.|++ .+++|+.+|..+..
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~n~i----------------~n~~~~~~~~~~~~ 273 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGL----------------QNVTFYHENLEEDV 273 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEECCTTSCC
T ss_pred CCceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHhccc----------------ccceeeecchhhhh
Confidence 5679999999999999999987 67999999999999999999999998 58999999987754
Q ss_pred cCC---CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 110 RDH---DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 110 ~~~---~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
... ..++|+||.+||=.- +. ..++.+.+ ++|.-++
T Consensus 274 ~~~~~~~~~~d~vilDPPR~G------~~-----------------------------------~~~~~l~~-~~~~~iv 311 (358)
T d1uwva2 274 TKQPWAKNGFDKVLLDPARAG------AA-----------------------------------GVMQQIIK-LEPIRIV 311 (358)
T ss_dssp SSSGGGTTCCSEEEECCCTTC------CH-----------------------------------HHHHHHHH-HCCSEEE
T ss_pred hhhhhhhccCceEEeCCCCcc------HH-----------------------------------HHHHHHHH-cCCCEEE
Confidence 322 247999999888542 11 11222222 3577778
Q ss_pred EEEeCCCCcHHHHHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeec
Q 043334 187 IFNMGGRPGQGVCKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEK 240 (903)
Q Consensus 187 l~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~ 240 (903)
++.++.......+ +.|.+.||++.++.... .|..+..++.++.++|
T Consensus 312 YVSCnp~TlaRDl-~~l~~~gy~l~~i~~~D-------~FP~T~HvE~v~~l~R 357 (358)
T d1uwva2 312 YVSCNPATLARDS-EALLKAGYTIARLAMLD-------MFPHTGHLESMVLFSR 357 (358)
T ss_dssp EEESCHHHHHHHH-HHHHHTTCEEEEEEEEC-------CSTTSSCCEEEEEEEC
T ss_pred EEeCCHHHHHHHH-HHHHHCCCeEeEEEEEe-------cCCCCccEEEEEEEEe
Confidence 8877655444443 35667899998874222 3334455666655544
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.87 E-value=1.9e-09 Score=109.63 Aligned_cols=105 Identities=12% Similarity=0.139 Sum_probs=84.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
..++|||+|||+|+-++.+|+..+ +.+|+.+|++++..+.|++++...|+ .++++++.||..+.
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~---------------~~~i~~~~Gda~e~ 123 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA---------------EHKIDLRLKPALET 123 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC---------------TTTEEEEESCHHHH
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc---------------cceEEEEEeehhhc
Confidence 368999999999999999999876 57999999999999999999998887 36899999998665
Q ss_pred cc-----CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC
Q 043334 109 CR-----DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS 183 (903)
Q Consensus 109 ~~-----~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg 183 (903)
.. ...++||+|+. ..+.. .+...++.+.+.|+||
T Consensus 124 l~~~~~~~~~~~fD~ifi-----D~dk~------------------------------------~y~~~~~~~~~lL~~G 162 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVV-----DADKE------------------------------------NCSAYYERCLQLLRPG 162 (219)
T ss_dssp HHHHHHTTCTTCEEEEEE-----CSCST------------------------------------THHHHHHHHHHHEEEE
T ss_pred chhhhhhcccCCccEEEE-----eCCHH------------------------------------HHHHHHHHHHHHhcCC
Confidence 32 12348999983 11111 1335688889999999
Q ss_pred cEEEEEe
Q 043334 184 GIMIFNM 190 (903)
Q Consensus 184 G~ll~~~ 190 (903)
|.++++-
T Consensus 163 Gvii~Dn 169 (219)
T d2avda1 163 GILAVLR 169 (219)
T ss_dssp EEEEEEC
T ss_pred cEEEEeC
Confidence 9999953
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=9.8e-09 Score=103.97 Aligned_cols=123 Identities=16% Similarity=0.157 Sum_probs=88.1
Q ss_pred CCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
.++|||+|||+|..++.+|+.++ +.+|+++|+++++++.|++++...|+ .++++++.||..+..
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl---------------~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL---------------QDKVTILNGASQDLI 121 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC---------------GGGEEEEESCHHHHG
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC---------------Cccceeeeccccccc
Confidence 57999999999999999998764 57999999999999999999998887 368999999998764
Q ss_pred cC-----CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 110 RD-----HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 110 ~~-----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
+. ...+||+|+.. .+ ... ......+.++.++|+|||
T Consensus 122 ~~l~~~~~~~~~D~ifiD-----~~-~~~---------------------------------~~~~~~l~~~~~lLkpGG 162 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLD-----HW-KDR---------------------------------YLPDTLLLEKCGLLRKGT 162 (214)
T ss_dssp GGHHHHSCCCCEEEEEEC-----SC-GGG---------------------------------HHHHHHHHHHTTCEEEEE
T ss_pred cchhhcccccccceeeec-----cc-ccc---------------------------------cccHHHHHHHhCccCCCc
Confidence 32 12379999731 10 000 001134777889999999
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCC
Q 043334 185 IMIFNMGGRPGQGVCKRLFERRG 207 (903)
Q Consensus 185 ~ll~~~~~~~~~~~l~~ll~~~g 207 (903)
+++++--...+.....+..++..
T Consensus 163 vIv~Ddvl~~g~~~~~~~vr~~~ 185 (214)
T d2cl5a1 163 VLLADNVIVPGTPDFLAYVRGSS 185 (214)
T ss_dssp EEEESCCCCCCCHHHHHHHHHCT
T ss_pred EEEEeCcCCCCChHHHHHHhccC
Confidence 98884332333333334555543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=4e-09 Score=109.06 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=89.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
...+|||+|||+|.+++.+++++|+.+++..|+ |+.++. .+ ..++++++.+|+++..
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~-------~~---------------~~~ri~~~~gd~~~~~ 137 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN-------AP---------------PLSGIEHVGGDMFASV 137 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT-------CC---------------CCTTEEEEECCTTTCC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc-------cC---------------CCCCeEEecCCccccc
Confidence 457999999999999999999999999999998 444432 11 1368999999998754
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
+ ..|+++. ....+.+ ..+...++++.+++.|+|||++++.
T Consensus 138 p----~~D~~~l-------------~~vLh~~-----------------------~de~~~~iL~~~~~aL~pgg~llI~ 177 (244)
T d1fp1d2 138 P----QGDAMIL-------------KAVCHNW-----------------------SDEKCIEFLSNCHKALSPNGKVIIV 177 (244)
T ss_dssp C----CEEEEEE-------------ESSGGGS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred c----cceEEEE-------------ehhhhhC-----------------------CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 3 4698873 2222222 2223448899999999999998882
Q ss_pred eC---C-------------------------CCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MG---G-------------------------RPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~---~-------------------------~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. . .......+++++++||+.++++
T Consensus 178 e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 178 EFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp EEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEE
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHHHHcCCCceEEE
Confidence 21 0 1134566889999999998874
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.84 E-value=2.8e-08 Score=111.99 Aligned_cols=174 Identities=9% Similarity=-0.005 Sum_probs=111.5
Q ss_pred HHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcHHHHHHHHH-cCCEEEEec--CCCCCC
Q 043334 654 TPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNGNYVSAARF-LKANIVNIP--TESEVG 730 (903)
Q Consensus 654 r~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~~~-~G~~vv~v~--~~~~~~ 730 (903)
..+.++.+++.+|.+. -+++++|++++...++.++++|||.|+++.-++......+.. .+..++... .++...
T Consensus 68 i~eae~~~A~~~ga~~----a~f~~~Gtt~~n~a~i~a~~~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~~~g~ 143 (462)
T d1c4ka2 68 AVAAEKHAARVYNADK----TYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGF 143 (462)
T ss_dssp HHHHHHHHHHHTTCSE----EEEESSHHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEECTTCC
T ss_pred HHHHHHHHHHHhCCCe----EEEECCchHHHHHHHHHHhcCCCCeEEecccchHHHHHHHHHHhcCCceeeecccccccc
Confidence 4557888888899753 488889999999888999999999999999999988775544 344544443 332111
Q ss_pred -c-----ccCHHHHH---------HHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-cc
Q 043334 731 -F-----KMTEKTLV---------TILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFSGL-EF 794 (903)
Q Consensus 731 -f-----~ld~~~L~---------~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~f 794 (903)
. .++.+.++ ++...+++.++++..| |-+|.+.+ +++|+++|+++|++|++|++++.- .|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--~~~G~~~d---l~~I~~ia~~~g~~l~vD~A~~~~~~~ 218 (462)
T d1c4ka2 144 IGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG--TYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVGYEQF 218 (462)
T ss_dssp EEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB--CTTSEEEC---HHHHHHHHGGGBSEEEEECTTCCGGGS
T ss_pred cCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEee--eeccchhh---HHHHHHHHHHcCCEEEEechhhccccc
Confidence 0 23333333 3333445445666555 57899988 888999999999999999999642 22
Q ss_pred CCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEe
Q 043334 795 NYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVL 843 (903)
Q Consensus 795 ~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~ 843 (903)
.+... . +....-..........+++.|++|++|.++ .|.++.
T Consensus 219 ~~~~~----~-~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~--~g~ll~ 260 (462)
T d1c4ka2 219 IPMMR----N-SSPLLIDDLGPEDPGIIVVQSVHKQQAGFS--QTSQIH 260 (462)
T ss_dssp SGGGG----G-GCTTSCCCCCTTSCEEEEEECHHHHSSCCT--TCEEEE
T ss_pred cCcCC----c-chhhccccccccCCccEEEEecCccccccc--ceEEEE
Confidence 21110 0 000000000000135789999999997554 355554
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=6.4e-08 Score=109.18 Aligned_cols=214 Identities=15% Similarity=0.170 Sum_probs=134.0
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccC
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILE 695 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~p 695 (903)
..||+-......++.....++ .......+|..+....+++.+++.+|.+. ++.+++++++...++.+++++
T Consensus 42 ~~idl~sd~~t~~~~~~~~a~----~~~gd~~Y~~~~~~~~le~~~a~l~G~~~-----~~~~~sGt~A~~~a~~~~~~~ 112 (467)
T d2v1pa1 42 VFIDLLTDSGTGAVTQSMQAA----MMRGDEAFSGSRSYYALAESVKNIFGYQY-----TIPTHQGRGAEQIYIPVLIKK 112 (467)
T ss_dssp CSEECSCCTTCSCCCHHHHHH----TTSCCCCSSSCHHHHHHHHHHHHHTCCSE-----EEEECSSTTTHHHHHHHHHHH
T ss_pred eeeeccccccchhhHHHHHhh----ccccchhhcCCchHHHHHHHHHHHHCCCE-----EEECCCCHHHHHHHHHHHhhc
Confidence 466765544333334333222 22223345555566778888888888763 444444455566677788776
Q ss_pred CCe---------EEEcCCCcHHHHHHHHHcCCEEEEecCCCC--------CCcccCHHHHHHHhhcCC---CcEEEEECC
Q 043334 696 GGT---------LCFPAGSNGNYVSAARFLKANIVNIPTESE--------VGFKMTEKTLVTILETVK---KPWVYISGP 755 (903)
Q Consensus 696 GD~---------Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~--------~~f~ld~~~L~~~l~~~~---~~~vil~~P 755 (903)
||. +......|......+...|+.++.++.+.. ....+|++++++.+++.+ .+++++.+.
T Consensus 113 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~ 192 (467)
T d2v1pa1 113 REQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATIT 192 (467)
T ss_dssp HHHHHCCCTTTCEEEESSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESS
T ss_pred cceEecCCCCcEEEEecccccccHHHHHHcCCeeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecce
Confidence 653 555666778888889999999999887632 134689999999887532 245666666
Q ss_pred CCCCc-ccCCCHHHHHHHHHHHHhCCcEEEEecCCCCC-c-cC---CCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 756 TINPT-GLLYSNKEIENILTVCAKYGARVVIDTAFSGL-E-FN---YEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 756 ~~NPT-G~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l-~-f~---~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
+ |.. |.+++.+++++|.++|++||+++|+|++...- . +. ......++.......+.. ...++-.|.+|
T Consensus 193 ~-~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~d~~s~s~~K 266 (467)
T d2v1pa1 193 S-NSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK-----YADMLAMSAKK 266 (467)
T ss_dssp B-CGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGG-----GCSEEEEESSS
T ss_pred e-eccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccccccCCcccccchhhcc-----cCCEEEecCCC
Confidence 5 544 68889999999999999999999999997310 0 00 000000122122222222 13556678888
Q ss_pred hcccccceeeEEEeCcH
Q 043334 830 KMLTGALKFGFLVLNHP 846 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~ 846 (903)
.++ |.+.|+++.+++
T Consensus 267 ~~~--~~~gg~i~~~~~ 281 (467)
T d2v1pa1 267 DAM--VPMGGLLCMKDD 281 (467)
T ss_dssp TTC--CSSCEEEEECSG
T ss_pred CCC--CCCceeEEecch
Confidence 775 555678887765
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=3e-09 Score=117.29 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=45.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNA 78 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~g 78 (903)
.++++|||||||+|..++.+|+..+..+|+|+|+++.|++.|++++...+
T Consensus 215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~ 264 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELK 264 (406)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999988899999999999999999987643
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=1.4e-07 Score=102.98 Aligned_cols=195 Identities=11% Similarity=0.059 Sum_probs=131.3
Q ss_pred CCcHHHHHHHHHHHHccCCC-CC--chHHHHHHHHHHHhhcCCC--CCCCCcEEecCchHHHHHHHHHHhc---cCCCeE
Q 043334 628 PIPSLVKAAIFESFARQNMS-ES--EIDVTPSIQQYIKSNFGFP--IDINAEFIYADCSQSLFNKLVLCCI---LEGGTL 699 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~-~G--~~~lr~ala~~l~~~~G~~--~~pe~~I~vt~Gs~~al~~ll~~l~---~pGD~V 699 (903)
+.|+.|++++. .+... ++ ..+..+.+.+.+++.++.. .+++ .|++|+|++++++.++..++ +|||+|
T Consensus 13 ~v~~~V~~Am~----~~~~~hr~~~f~~~~~~~~~~~r~~~~~~~~~~~~-~i~~t~sgT~a~~~~~~~l~~~~~~gd~v 87 (382)
T d2bkwa1 13 ILSGAVQKALD----VPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQ-PFVLAGSGTLGWDIFASNFILSKAPNKNV 87 (382)
T ss_dssp CCCHHHHHTTS----CCCCCTTSHHHHHHHHHHHHHHHHHTTCCGGGTCE-EEEEESCTTHHHHHHHHHHSCTTCSCCEE
T ss_pred CCCHHHHHHhC----cccCCCCcHHHHHHHHHHHHHHHHHHhhhcCCCCe-EEEEeCcHHHHHHHHHHHHHHhcCCCCce
Confidence 45777777653 22221 22 2233345556666666642 3333 79999999999999999986 689999
Q ss_pred EEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHH
Q 043334 700 CFPAGSNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCA 777 (903)
Q Consensus 700 lv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~ 777 (903)
++..-.+.. +...++..|.....+...+ .+...+.+.+++.+...+.+++++++-+ |.||...+. .++.+.|+
T Consensus 88 lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~tg~~~~~---~~~~~~~~ 162 (382)
T d2bkwa1 88 LVVSTGTFSDRFADCLRSYGAQVDVVRPLK-IGESVPLELITEKLSQNSYGAVTVTHVD-TSTAVLSDL---KAISQAIK 162 (382)
T ss_dssp EEECSSHHHHHHHHHHHHTTCEEEEECCSS-TTSCCCHHHHHHHHHHSCCSEEEEESEE-TTTTEECCH---HHHHHHHH
T ss_pred EEEEechhhhhhhhhccccccccccccccC-CCCccchhHHHHHhhhccchheeeeecc-ccccccccc---hhhhhhcc
Confidence 998877665 3445677888888776543 3445778888877766555688888887 999999994 44455444
Q ss_pred --hCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHH
Q 043334 778 --KYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAF 852 (903)
Q Consensus 778 --k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l 852 (903)
.+++++++|.+.+. +..+. + +.. .+..+++.|--|.+ |.+| +|+++..++ +++.+
T Consensus 163 ~~~~~~~~~vDa~qs~---g~~pi---d-------~~~----~giD~~~~s~~K~l~gP~G--~g~l~vs~~-~~~~~ 220 (382)
T d2bkwa1 163 QTSPETFFVVDAVCSI---GCEEF---E-------FDE----WGVDFALTASQKAIGAPAG--LSISLCSSR-FMDYA 220 (382)
T ss_dssp HHCTTSEEEEECTTTT---TTSCC---C-------TTT----TTCSEEEEESSSTTCCCSC--EEEEEECHH-HHHHH
T ss_pred ccccceeeeeeccccc---ccccc---c-------ccc----cCeeEEeecccccCcCCCc--hhhhhccHH-HHhhh
Confidence 45699999998742 22221 0 111 13578999999988 6678 799999887 55543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.76 E-value=8.4e-09 Score=105.24 Aligned_cols=104 Identities=17% Similarity=0.276 Sum_probs=84.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
..++|||+|||+|+-++.+|+..+ +.+|+.+|.+++..+.|++++...|++ ++++++.||..+.
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~---------------~~i~~~~g~a~~~ 123 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVD---------------HKIDFREGPALPV 123 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCG---------------GGEEEEESCHHHH
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccc---------------cceeeeehHHHHH
Confidence 368999999999999999999876 579999999999999999999988873 6899999999776
Q ss_pred ccC------CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccC
Q 043334 109 CRD------HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKP 182 (903)
Q Consensus 109 ~~~------~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkp 182 (903)
... ..++||+|+ +..+... |...++.+.+.|+|
T Consensus 124 L~~l~~~~~~~~~fD~iF-----iDa~k~~------------------------------------y~~~~e~~~~ll~~ 162 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIF-----VDADKDN------------------------------------YLNYHKRLIDLVKV 162 (227)
T ss_dssp HHHHHHCGGGTTCBSEEE-----ECSCSTT------------------------------------HHHHHHHHHHHBCT
T ss_pred HHHHHhccccCCceeEEE-----eccchhh------------------------------------hHHHHHHHHhhcCC
Confidence 432 134799998 2211111 33678888999999
Q ss_pred CcEEEEE
Q 043334 183 SGIMIFN 189 (903)
Q Consensus 183 gG~ll~~ 189 (903)
||.++++
T Consensus 163 gGiii~D 169 (227)
T d1susa1 163 GGVIGYD 169 (227)
T ss_dssp TCCEEEE
T ss_pred CcEEEEc
Confidence 9999995
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.76 E-value=1.6e-08 Score=111.33 Aligned_cols=205 Identities=14% Similarity=0.048 Sum_probs=141.0
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCCC--------CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMSE--------SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~~--------G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
.++.|.|+.+.-. ++|..+.+++.+.+..+.... ...++.+.+++.+++..|++.+ +|++|+++++++
T Consensus 25 ~~~~iYLd~as~g-~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llga~~~---ei~~~~~~T~~~ 100 (404)
T d1qz9a_ 25 PEGVIYLDGNSLG-ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIGARDG---EVVVTDTTSINL 100 (404)
T ss_dssp CTTCEECCTTTSC-CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTTCCTT---SEEECSCHHHHH
T ss_pred CCCCEEcCCcccc-cCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhCCCCC---cEEEecCchHHH
Confidence 3567888877644 357778888888775532111 1235667889999999998765 899999999998
Q ss_pred HHHHHHh------ccCCCeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCC
Q 043334 686 NKLVLCC------ILEGGTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINP 759 (903)
Q Consensus 686 ~~ll~~l------~~pGD~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NP 759 (903)
..++... ..+|+.|++.+-.+.+........+.++..++.+. ....+++.+++++++++ ++|.+++.+ |.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~T-~lV~i~~v~-~~ 176 (404)
T d1qz9a_ 101 FKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTL--RLVDSPEELPQAIDQDT-AVVMLTHVN-YK 176 (404)
T ss_dssp HHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEE--EEESSGGGHHHHCSTTE-EEEEEESBC-TT
T ss_pred HHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhhhheeeeeceec--cccccchhHHHhcCCCc-eEEEEeccc-cc
Confidence 8765432 45788888877776654444433333333333322 12356788889999888 599999998 99
Q ss_pred cccCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceee
Q 043334 760 TGLLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFG 839 (903)
Q Consensus 760 TG~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG 839 (903)
||.+++ +++|.++|+++++.+++|-+.+.-.. + .. +... +..++..|..|.++.+.--+|
T Consensus 177 tG~~~p---v~~i~~~~~~~~~~~~vD~~q~~g~~---~---~~----~~~~-------~~d~~~~s~~K~~~~~~g~~g 236 (404)
T d1qz9a_ 177 TGYMHD---MQALTALSHECGALAIWDLAHSAGAV---P---VD----LHQA-------GADYAIGCTYKYLNGGPGSQA 236 (404)
T ss_dssp TCBBCC---HHHHHHHHHHHTCEEEEECTTTTTTS---C---CC----HHHH-------TCSEEEECSSSTTCCCTTCCC
T ss_pred ccceec---HHHHhccccccccceeEEeecccccc---c---cc----cccc-------cceEEEEechhhcccCCceEE
Confidence 999999 88899999999999999998842211 1 11 1111 256788888897754444467
Q ss_pred EEEeCcH
Q 043334 840 FLVLNHP 846 (903)
Q Consensus 840 ~lv~~~~ 846 (903)
++..++.
T Consensus 237 ~~~~~~~ 243 (404)
T d1qz9a_ 237 FVWVSPQ 243 (404)
T ss_dssp EEEECTT
T ss_pred EEEechh
Confidence 8887765
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=4e-08 Score=104.91 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=99.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||.+|.|.|..+..+.+..+..+|+++|+++++++.|++.+...+- +..-.+|++++.+|..++.
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-----------~~~~d~rv~i~~~Da~~~l 145 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-----------GAFDDPRAVLVIDDARAYL 145 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-----------TGGGCTTEEEEESCHHHHH
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-----------CccCCCceEEEEchHHHHh
Confidence 46899999999999999988776678999999999999999987643211 0011368999999999987
Q ss_pred cCCCCceeEEEECCC--CCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEE
Q 043334 110 RDHDIQLERIVGCIP--QILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMI 187 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpP--y~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll 187 (903)
.....+||+|+..++ +..... .. .+. -..+++.+.+.|+|||+++
T Consensus 146 ~~~~~~yDvIi~D~~dp~~~~~~----~~------------------~L~-----------t~eF~~~~~~~L~p~Gvlv 192 (312)
T d1uira_ 146 ERTEERYDVVIIDLTDPVGEDNP----AR------------------LLY-----------TVEFYRLVKAHLNPGGVMG 192 (312)
T ss_dssp HHCCCCEEEEEEECCCCBSTTCG----GG------------------GGS-----------SHHHHHHHHHTEEEEEEEE
T ss_pred hhcCCcccEEEEeCCCcccccch----hh------------------hhh-----------hHHHHHHHHHhcCCCceEE
Confidence 665568999996543 221110 00 000 1268999999999999999
Q ss_pred EEeCCCC--c---HHHHHHHHHHCCCeEEEEEehhhh
Q 043334 188 FNMGGRP--G---QGVCKRLFERRGFRVDKLWQTKIL 219 (903)
Q Consensus 188 ~~~~~~~--~---~~~l~~ll~~~gf~~~~~~~~~~~ 219 (903)
+..+... . ...+.+.+++ .|..+..+...++
T Consensus 193 ~~~~s~~~~~~~~~~~i~~tl~~-~F~~V~~y~~~vP 228 (312)
T d1uira_ 193 MQTGMILLTHHRVHPVVHRTVRE-AFRYVRSYKNHIP 228 (312)
T ss_dssp EEEEEECC---CHHHHHHHHHHT-TCSEEEEEEEEEG
T ss_pred EecCCcccchHHHHHHHHHHHHH-hCceEEEEEeeeC
Confidence 8664321 1 1222334444 4887777665543
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=98.71 E-value=4.1e-07 Score=101.45 Aligned_cols=261 Identities=11% Similarity=0.054 Sum_probs=164.9
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNK 687 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ 687 (903)
...|...+|+..| ...++ ..|.+.+++.+.+.+.............+++.+.+..+. . + .+.++++++++...
T Consensus 48 D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~--~-~v~f~~sGseA~e~ 123 (427)
T d2gsaa_ 48 DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSFGAPCALENVLAEMVNDAVPS-I--E-MVRFVNSGTEACMA 123 (427)
T ss_dssp ETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCCSSCCHHHHHHHHHHHHHSTT-C--S-EEEEESSHHHHHHH
T ss_pred ECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCccccchhHHHHHHHHHHhhCCc-c--c-cccccCCcHHHHHH
Confidence 3578889999655 44444 578899999998877544444455667778877775432 2 2 78888888888888
Q ss_pred HHHHhc--cCCCeEEEcCCCcHHHHHHH--------HHcC------------CEEEEecCCCCCCcccCHHHHHHHhhcC
Q 043334 688 LVLCCI--LEGGTLCFPAGSNGNYVSAA--------RFLK------------ANIVNIPTESEVGFKMTEKTLVTILETV 745 (903)
Q Consensus 688 ll~~l~--~pGD~Vlv~~P~y~~~~~~~--------~~~G------------~~vv~v~~~~~~~f~ld~~~L~~~l~~~ 745 (903)
++.... .....|+...-+|-+....+ ...+ .+...++. -|++.+++.+++.
T Consensus 124 Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~le~~~~~~ 196 (427)
T d2gsaa_ 124 VLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPY-------NDLEAVKALFAEN 196 (427)
T ss_dssp HHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECT-------TCHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCc-------chHHHHHHHHHhC
Confidence 776543 23356777666664321111 1111 11222221 3789999988753
Q ss_pred C-CcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEE
Q 043334 746 K-KPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSL 823 (903)
Q Consensus 746 ~-~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~ 823 (903)
. ..+.++.-|-+--.|. ..+.+.+++|.++|++||+++|.||+..++- .+.. + ....++-.| .|
T Consensus 197 ~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r-~g~~---~----~~~~~gi~P-----Di- 262 (427)
T d2gsaa_ 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFR-IAYG---G----VQEKFGVTP-----DL- 262 (427)
T ss_dssp TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTT-TBTT---C----HHHHTTCCC-----SE-
T ss_pred CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccce-eccc---c----hHHhcCCCH-----HH-
Confidence 2 2356666675222354 5577889999999999999999999997652 2322 1 122333333 22
Q ss_pred EccCchhcccccceeeEEEeCcHHHHHHHHhCC-----CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHH
Q 043334 824 LGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP-----GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRS 898 (903)
Q Consensus 824 l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~-----~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr 898 (903)
-.++|.+| .|+-+|.+++.++ +.+.+.... .+++.++.+-.++.+.|+.-.. +.+.+.+.++-+.++++.
T Consensus 263 -~~~gK~lg-gG~p~~a~~~~~~-i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~--~~l~~~~~~~g~~l~~~L 337 (427)
T d2gsaa_ 263 -TTLGKIIG-GGLPVGAYGGKRE-IMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGL 337 (427)
T ss_dssp -EEECGGGG-TTSCCEEEEECHH-HHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHH
T ss_pred -HhhhhccC-CCcceeeeeehHH-HHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhh--hhHHhhhhHHHHHHHHHH
Confidence 34678886 6899999999887 887776422 2567788888888888753222 234556666666666655
Q ss_pred HHH
Q 043334 899 KRL 901 (903)
Q Consensus 899 ~~l 901 (903)
+.+
T Consensus 338 ~~l 340 (427)
T d2gsaa_ 338 LAI 340 (427)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.69 E-value=2.1e-07 Score=100.47 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=128.5
Q ss_pred CCCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCC
Q 043334 626 FLPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGS 705 (903)
Q Consensus 626 ~~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~ 705 (903)
+.+.|+.|++++...... +......++.+.+++.+++..|++.+.. .+++|+|+++++..++..+..++|.+++....
T Consensus 8 P~~~~~~V~~A~~~~~~~-~~~~~~~~~~~~~r~~l~~l~~~~~~~~-~i~~t~s~T~~~~~~~~~l~~~~~~~~~~~~~ 85 (361)
T d1m32a_ 8 PLTTSRTVKEAMLFDSCT-WDDDYNIGVVEQIRQQLTALATASEGYT-SVLLQGSGSYAVEAVLGSALGPQDKVLIVSNG 85 (361)
T ss_dssp SCCCCHHHHHTTCCCCCT-TSHHHHTTTHHHHHHHHHHHHCSSSSEE-EEEEESCHHHHHHHHHHHSCCTTCCEEEEESS
T ss_pred CCCCCHHHHHHhhhhccC-CCcHHHHHHHHHHHHHHHHHhCCCCCCE-EEEECCCHHHHHHHHHHHhhhhccccceeeeh
Confidence 345677777765322100 0011123445677788888889876521 37788889999999999999998888777666
Q ss_pred cHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEE
Q 043334 706 NGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 706 y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~V 783 (903)
+.. .....+..+.....+..........+.+.......+++ +++.++.-+ |-||...+ +++|.++|+++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~tG~~~~---i~~i~~~~~~~g~~~ 160 (361)
T d1m32a_ 86 AYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTI-SHIAMVHSE-TTTGMLNP---IDEVGALAHRYGKTY 160 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTC-CEEEEESEE-TTTTEECC---HHHHHHHHHHHTCEE
T ss_pred hhhhhHHHHhhhhhcccccccccccCCccchhhHHHHHhccCc-cceEEEeee-cccccchh---hhhhhhhhcccceee
Confidence 543 33344566666666665543332233344444445555 588888887 99999999 788889999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc-ccceeeEEEeCcH
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT-GALKFGFLVLNHP 846 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~-~GlRiG~lv~~~~ 846 (903)
++|-+++-.. .+. + ++.. +..+++.|..|.++. +| +|+++..++
T Consensus 161 ~vDa~qs~G~---~~~---d-------~~~~----~~D~~~~s~~K~l~gp~G--~g~l~~~~~ 205 (361)
T d1m32a_ 161 IVDAMSSFGG---IPM---D-------IAAL----HIDYLISSANKCIQGVPG--FAFVIAREQ 205 (361)
T ss_dssp EEECTTTTTT---SCC---C-------TTTT----TCSEEEEESSSTTCCCSS--EEEEEEEHH
T ss_pred EeecccccCc---ccc---c-------cccc----ccceEEeeecccccCCCC--ceEEEechh
Confidence 9999985321 110 0 1121 367899999998854 47 688887754
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.68 E-value=9.7e-08 Score=103.82 Aligned_cols=210 Identities=11% Similarity=0.041 Sum_probs=145.3
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC------CC-Cc---hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM------SE-SE---IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~------~~-G~---~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.|+|-.++|.. ++.+++++...+.. |.. .+ |. .++.....+..++.||.... +|-..+|+.+
T Consensus 23 ~~~l~LiaSEN~~--S~~v~~a~~S~l~nkyaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~a~~a---nVqp~SGs~A 97 (405)
T d1kl1a_ 23 HAKIELIASENFV--SRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA---NVQPHSGAQA 97 (405)
T ss_dssp HHSEECCTTCCCC--CHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHCCSEE---ECCCSSHHHH
T ss_pred HcCceEeccCCcC--CHHHHHHhcCcccCcCcCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCcc---eeeccCchHH
Confidence 3578998888764 67788887776643 321 12 21 22223334566777888776 7888889888
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHH-----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSA-----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
.+. ++.+|++|||+|+..++..+++... ......+.+.+++++ +++.+|.+++++.+...++++|++..-. +
T Consensus 98 n~a-v~~all~pGD~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~~~ID~d~l~~~a~~~kPklIi~G~S~-y 174 (405)
T d1kl1a_ 98 NMA-VYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDP-ETHVIDYDDVREKARLHRPKLIVAAASA-Y 174 (405)
T ss_dssp HHH-HHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCT-TTCSBCHHHHHHHHHHHCCSEEEECCSS-C
T ss_pred HHH-HHHHhcCCCCEEEEeecccccccccCccccccceEEEEEEeccch-hcccccHHHHHHHHHhhCcceEEecccc-c
Confidence 777 5888999999999998866654432 233457889999986 4578999999999887665555554443 4
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
|- .++ ++++.++|.+.|.+++.|-++. +|+-.+...+ .+ +. -.|+..|.-|++ +|=|
T Consensus 175 ~r--~~d---~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~------P~---~~------aDvvt~tThKtl--rGPr 232 (405)
T d1kl1a_ 175 PR--IID---FAKFREIADEVGAYLMVDMAHIAGLVAAGLHPN------PV---PY------AHFVTTTTHKTL--RGPR 232 (405)
T ss_dssp CS--CCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCC------ST---TT------CSEEEEESSSTT--CCCS
T ss_pred cc--ccC---hHHHHHHHhhhCCEEecchhhHhhhhhhhhcCC------hh---hh------hhheeccccccc--cCCC
Confidence 43 444 7777888888999999999883 3444433211 11 11 356788999998 5889
Q ss_pred eeEEEeCcHHHHHHHHhC
Q 043334 838 FGFLVLNHPQLVDAFSSF 855 (903)
Q Consensus 838 iG~lv~~~~~li~~l~~~ 855 (903)
-|.+.+.++ +.+++.+.
T Consensus 233 gg~I~~~~~-~~~~i~~a 249 (405)
T d1kl1a_ 233 GGMILCQEQ-FAKQIDKA 249 (405)
T ss_dssp CEEEEECHH-HHHHHHHH
T ss_pred CceEEecch-hHHHHHhh
Confidence 999999876 88888764
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=1.8e-07 Score=105.02 Aligned_cols=216 Identities=13% Similarity=0.002 Sum_probs=150.7
Q ss_pred CCCeEEccCCCCCCCCcHHHHHHHHHHHHccCCC----CCchHHHHHHHHHHHhhcCCCCCCC--CcEEecCchHHHHHH
Q 043334 614 NSGLIHMDVDQSFLPIPSLVKAAIFESFARQNMS----ESEIDVTPSIQQYIKSNFGFPIDIN--AEFIYADCSQSLFNK 687 (903)
Q Consensus 614 ~~~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~----~G~~~lr~ala~~l~~~~G~~~~pe--~~I~vt~Gs~~al~~ 687 (903)
|.+..+|....+.+ +++.+.+.+.+.+.+.... ....++...+.+++++.+|.+...+ ..=.+|+|+++++..
T Consensus 52 g~~~~n~asf~~t~-~~~~~~~l~~~~~~~N~~~~~~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~ 130 (450)
T d1pmma_ 52 GNARQNLATFCQTW-DDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML 130 (450)
T ss_dssp CCGGGBCSCCSCCC-CCHHHHHHHHHTTTCBTTCTTTSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHH
T ss_pred CCccccccccccCC-CCHHHHHHHHHHHhcCCCCcccCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHH
Confidence 44445666555444 4556667777766542221 1234667888999999999864211 124788888888877
Q ss_pred HHHHhcc-----------CC-CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECC
Q 043334 688 LVLCCIL-----------EG-GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGP 755 (903)
Q Consensus 688 ll~~l~~-----------pG-D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P 755 (903)
.+.+... ++ ..++++...+..+..+++..|++++.+|+++ +++.+|+++|++++++++ .+|+.+.+
T Consensus 131 a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi~~~~v~~~~-~~~~~d~~~L~~~i~~~t-~~Vv~t~g 208 (450)
T d1pmma_ 131 GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRP-GQLFMDPKRMIEACDENT-IGVVPTFG 208 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTCEEEECCCBT-TBCSCCHHHHHHHCCTTE-EEEECBBS
T ss_pred HHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHcCCCceEeeecC-CCCcCcHHHHHHHhhhCc-eEEEeeee
Confidence 6655321 12 2578888899999999999999999999975 458899999999999877 47888888
Q ss_pred CCCCcccCCCHHHHHHHHH---HHHhCCcEEEEecCCCCCc--cCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 756 TINPTGLLYSNKEIENILT---VCAKYGARVVIDTAFSGLE--FNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 756 ~~NPTG~v~s~eel~eI~~---ia~k~~i~VI~DeaY~~l~--f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
+ |.||.+=+.+++.+|++ .|+++|+++.+|-+|+++. |..+... + ...+. .-..+..|.-|.
T Consensus 209 t-t~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~-~-----~~~~~------~aDSi~~s~HK~ 275 (450)
T d1pmma_ 209 V-TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIV-W-----DFRLP------RVKSISASGHKF 275 (450)
T ss_dssp C-TTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCC-C-----STTST------TEEEEEEETTTT
T ss_pred e-ccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhh-h-----hhccc------ceeEeecChhhc
Confidence 8 99999999887766655 4678999999999997543 3322210 0 11111 245678889996
Q ss_pred cccccceeeEEEeCcH
Q 043334 831 MLTGALKFGFLVLNHP 846 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~ 846 (903)
++ .-.-+||++..++
T Consensus 276 ~~-~p~g~g~l~~r~~ 290 (450)
T d1pmma_ 276 GL-APLGCGWVIWRDE 290 (450)
T ss_dssp TC-CCSSCEEEEESSG
T ss_pred cC-CCCCeeEEEecCh
Confidence 54 4455899999876
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.66 E-value=2.3e-08 Score=103.30 Aligned_cols=121 Identities=15% Similarity=0.191 Sum_probs=87.7
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
..+|+|+|||+|.+++.+++++|+.+++..|+ |+.++.+ +. .+|++++.+|+++..+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-------~~---------------~~rv~~~~gD~f~~~p 137 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-------SG---------------SNNLTYVGGDMFTSIP 137 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-------CC---------------BTTEEEEECCTTTCCC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-------cc---------------cCceEEEecCcccCCC
Confidence 46899999999999999999999999999999 4444322 11 3689999999987532
Q ss_pred CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCC---cEEE
Q 043334 111 DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPS---GIMI 187 (903)
Q Consensus 111 ~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~Lkpg---G~ll 187 (903)
.+|+++. ....+.+.+ +...++++.+++.|+|| |+++
T Consensus 138 ----~aD~~~l-------------~~vLHdw~d-----------------------~~~~~iL~~~~~al~pgg~~~~ll 177 (244)
T d1fp2a2 138 ----NADAVLL-------------KYILHNWTD-----------------------KDCLRILKKCKEAVTNDGKRGKVT 177 (244)
T ss_dssp ----CCSEEEE-------------ESCGGGSCH-----------------------HHHHHHHHHHHHHHSGGGCCCEEE
T ss_pred ----CCcEEEE-------------EeecccCCh-----------------------HHHHHHHHHHHHHcCcccCCcEEE
Confidence 5798873 222222222 23347899999999998 6666
Q ss_pred EEeC---------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 188 FNMG---------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 188 ~~~~---------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+... .....+..+++++++||+.++++
T Consensus 178 i~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 178 IIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp EEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 6211 11245667889999999998874
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.65 E-value=2.6e-08 Score=102.10 Aligned_cols=78 Identities=21% Similarity=0.356 Sum_probs=65.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++++|||+|||+|.++..+++. +.+|+++|+|+.+++..+++.... ++++++++|++++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~~~------------------~n~~i~~~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLVDH------------------DNFQVLNKDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTTTC------------------CSEEEECCCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhhcc------------------cchhhhhhhhhhc
Confidence 46899999999999999999987 679999999999999998876322 5899999999998
Q ss_pred ccCCCCceeEEEECCCCCC
Q 043334 109 CRDHDIQLERIVGCIPQIL 127 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~ 127 (903)
..+.. ....||+|.||.-
T Consensus 80 ~~~~~-~~~~vv~NLPYnI 97 (235)
T d1qama_ 80 KFPKN-QSYKIFGNIPYNI 97 (235)
T ss_dssp CCCSS-CCCEEEEECCGGG
T ss_pred ccccc-ccceeeeeehhhh
Confidence 65433 3457899999983
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=2.7e-07 Score=100.72 Aligned_cols=210 Identities=13% Similarity=0.021 Sum_probs=143.4
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC------CC-Cc---hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM------SE-SE---IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQS 683 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~------~~-G~---~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~ 683 (903)
.+.|+|-.++|. +++.+++++...+.. |.- .+ |. .++.....+..++.||.... +|-..+|+.+
T Consensus 26 ~~~i~LiaSEN~--~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a---nVqp~SGs~A 100 (416)
T d1dfoa_ 26 EEHIELIASENY--TSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA---NVQPHSGSQA 100 (416)
T ss_dssp HHSEECCTTCCC--CCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHH
T ss_pred HcCceEecCccc--CCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc---eeecccCccH
Confidence 457888888876 467788887776643 321 12 22 22233334556677888766 7888888887
Q ss_pred HHHHHHHHhccCCCeEEEcCCCcHHHHHH-----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCC
Q 043334 684 LFNKLVLCCILEGGTLCFPAGSNGNYVSA-----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTIN 758 (903)
Q Consensus 684 al~~ll~~l~~pGD~Vlv~~P~y~~~~~~-----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~N 758 (903)
.+. ++.++++|||+|+..++..+++... +.....+.++++++. ++ .+|.+++++.....++++|+...-. +
T Consensus 101 N~a-v~~All~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~-~~-~IDyd~l~~~a~~~kPklIi~G~S~-y 176 (416)
T d1dfoa_ 101 NFA-VYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDA-TG-HIDYADLEKQAKEHKPKMIIGGFSA-Y 176 (416)
T ss_dssp HHH-HHHHHCCTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCS-SS-SBCHHHHHHHHHHHCCSEEEEECSS-C
T ss_pred HHH-HHHHhcCCCCeeeeccccccccccccccccccCceEEEEecccCC-cc-CccHHHHHHHHHHhccceEEecccc-c
Confidence 776 4788999999999999887765443 233346788888875 33 4999999998887665666666444 4
Q ss_pred CcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccce
Q 043334 759 PTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALK 837 (903)
Q Consensus 759 PTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlR 837 (903)
| ..++ ++++.++|.+.|.+++.|-++. +|+-.+... +. ++ .-.++.+|..|++ +|-|
T Consensus 177 ~--r~~d---~~~~reiad~vga~l~~D~aH~~GLIa~g~~~------sP---~~------~aDvvt~tThKtl--rGPr 234 (416)
T d1dfoa_ 177 S--GVVD---WAKMREIADSIGAYLFVDMAHVAGLVAAGVYP------NP---VP------HAHVVTTTTHKTL--AGPR 234 (416)
T ss_dssp C--SCCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC------CC---TT------TSSEEEEESSSTT--CCCS
T ss_pred c--cccC---HHHHHHHHHhcCceEEcchhhhhcceeccccC------Cc---cc------ccceeeeehhhcc--cCCC
Confidence 4 4555 7778888889999999999984 233222221 00 11 1358999999998 5889
Q ss_pred eeEEEeCc--HHHHHHHHhC
Q 043334 838 FGFLVLNH--PQLVDAFSSF 855 (903)
Q Consensus 838 iG~lv~~~--~~li~~l~~~ 855 (903)
-|.+.++. +++.+++.+.
T Consensus 235 ggiI~~~~~~~~~~~~i~~a 254 (416)
T d1dfoa_ 235 GGLILAKGGSEELYKKLNSA 254 (416)
T ss_dssp CEEEEESSCCHHHHHHHHHH
T ss_pred ceEEEeccchHhHHHHHHhh
Confidence 99999963 4477877653
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.61 E-value=1.4e-07 Score=99.58 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=98.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||-+|.|.|..+..+.+..+..+|+++|+|+++++.|++.+..+.- .--.+|++++.+|..++.
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~------------~~~d~rv~v~~~Da~~~l 156 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC------------GFDDPRAEIVIANGAEYV 156 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG------------GGGCTTEEEEESCHHHHG
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc------------cccCCCcEEEhhhHHHHH
Confidence 46899999999999999988766677999999999999999987644321 011368999999999998
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+|+.+++--...... .+. -..+++.+.+.|+|||+++..
T Consensus 157 ~~~~~~yDvIi~D~~dp~~~~~~----------------------~L~-----------t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 157 RKFKNEFDVIIIDSTDPTAGQGG----------------------HLF-----------TEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp GGCSSCEEEEEEEC--------------------------------CC-----------SHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCCEEEEcCCCCCcCchh----------------------hhc-----------cHHHHHHHHhhcCCCcEEEEe
Confidence 77667899999653321100000 011 127899999999999999998
Q ss_pred eCCCC-cHHHHHHH---HHHCCCeEEEEEehh
Q 043334 190 MGGRP-GQGVCKRL---FERRGFRVDKLWQTK 217 (903)
Q Consensus 190 ~~~~~-~~~~l~~l---l~~~gf~~~~~~~~~ 217 (903)
.++.. ....+..+ +++. |..+..+...
T Consensus 204 ~~sp~~~~~~~~~i~~tl~~v-F~~v~~y~~~ 234 (295)
T d1inla_ 204 TEDPFYDIGWFKLAYRRISKV-FPITRVYLGF 234 (295)
T ss_dssp CCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEE
T ss_pred cCChhhhhHHHHHHHHHHHhh-cceeEEEEee
Confidence 77643 33332333 3333 7777765544
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=98.58 E-value=1.3e-06 Score=94.51 Aligned_cols=198 Identities=11% Similarity=0.025 Sum_probs=133.5
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
+.|+.|++++....- .+...-..++.+.+++.+++.+|.+.+ . .|++++|+++++..++..++.+|+.+++..-.+.
T Consensus 28 ~v~~~Vl~am~~~~~-~hr~~ef~~i~~~~r~~l~~ll~~~~~-~-~i~~~g~gT~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (377)
T d1vjoa_ 28 NAHPSVLQAMNVSPV-GHLDPAFLALMDEIQSLLRYVWQTENP-L-TIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYF 104 (377)
T ss_dssp CCCHHHHHHHSSCCC-CTTSHHHHHHHHHHHHHHHHHHTCCCS-C-EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHH
T ss_pred CCCHHHHHHhCcCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCC-e-EEEEcCcHHHHHHHHHHhccccccccceeeechh
Confidence 467888877533210 111222345667788888888898643 2 6888899999999999999999999988877766
Q ss_pred HH--HHHHHHcCCEEEEecCCCCCCcccCHHHHHHH-hhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEE
Q 043334 708 NY--VSAARFLKANIVNIPTESEVGFKMTEKTLVTI-LETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVV 784 (903)
Q Consensus 708 ~~--~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~-l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI 784 (903)
.. ....+..+.....+.....+. .+.+..+.. ..+++ .++.+++-+ |.||...+ +++|.++|+++|.+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~v~~~~~~-~~tg~~~~---i~~i~~~~~~~g~~~~ 177 (377)
T d1vjoa_ 105 GNRLVDMAGRYGADVRTISKPWGEV--FSLEELRTALETHRP-AILALVHAE-TSTGARQP---LEGVGELCREFGTLLL 177 (377)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTCC--CCHHHHHHHHHHHCC-SEEEEESEE-TTTTEECC---CTTHHHHHHHHTCEEE
T ss_pred hhhhhhhhhhhcccccccccCCCCc--ccchhhhhhhhcCcc-eeeeeeeee-ccceeeec---hhhhhhhhhhccceEE
Confidence 53 344566777777776654332 445544444 34444 588888777 99999998 8889999999999999
Q ss_pred EecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHh
Q 043334 785 IDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSS 854 (903)
Q Consensus 785 ~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~ 854 (903)
+|.+.+. +..+. .++.. +..+++.|-.|.++.|+ -+|+++..+. .++....
T Consensus 178 vDa~~~~---g~~~~----------~~~~~----~~d~~~~s~~K~~~gp~-g~~~~~~~~~-~~~~~~~ 228 (377)
T d1vjoa_ 178 VDTVTSL---GGVPI----------FLDAW----GVDLAYSCSQKGLGCSP-GASPFTMSSR-AIEKLQR 228 (377)
T ss_dssp EECTTTT---TTSCC----------CTTTT----TCSEEECCSSSTTCSCS-SCEEEEECHH-HHHHHHT
T ss_pred Eecchhh---hhhhh----------ccccc----ccceeeecccccccCCC-EEEEecchhh-HHhhhhc
Confidence 9998842 11110 01121 35678888899775443 3677777766 6655443
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1e-06 Score=97.34 Aligned_cols=259 Identities=10% Similarity=0.041 Sum_probs=159.4
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC-CC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS-ES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~-~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
...|...||+..| ...++ .++.+.+++.+.+.+.... .. .......+++.+.+..+. + .+.++++++++.
T Consensus 37 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~v~~~~sGseA~ 111 (404)
T d2byla1 37 DVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNY--H---KVLPMNTGVEAG 111 (404)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHTC--S---EEEEESSHHHHH
T ss_pred ECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhcccc--c---ccccccCccccc
Confidence 3567889998755 34344 5778999999988764332 12 233455566666665543 2 688888888888
Q ss_pred HHHHHHhcc----------CCCeEEEcCCCcHH-HHHHHHHc-------C-----CEEEEecCCCCCCcccCHHHHHHHh
Q 043334 686 NKLVLCCIL----------EGGTLCFPAGSNGN-YVSAARFL-------K-----ANIVNIPTESEVGFKMTEKTLVTIL 742 (903)
Q Consensus 686 ~~ll~~l~~----------pGD~Vlv~~P~y~~-~~~~~~~~-------G-----~~vv~v~~~~~~~f~ld~~~L~~~l 742 (903)
..++..... ....++...-+|.. ........ + ..+..+|. .|.+++++.+
T Consensus 112 e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~l 184 (404)
T d2byla1 112 ETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPY-------NDLPALERAL 184 (404)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECT-------TCHHHHHHHH
T ss_pred hhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEecc-------cCHHHHHHhc
Confidence 887766421 12355555444432 11111111 1 12223332 3689999998
Q ss_pred hcCCCcEEEEECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 743 ETVKKPWVYISGPTINPTG-LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
.+.+. +.++.-|-+.-.| ...+.+.+++|.++|+++|+++|.||+..++--.+.. +. ....+-.| .
T Consensus 185 ~~~~i-AaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~---~a----~~~~gv~P-----D 251 (404)
T d2byla1 185 QDPNV-AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW---LA----VDYENVRP-----D 251 (404)
T ss_dssp TSTTE-EEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS---SG----GGGGTCCC-----S
T ss_pred CCCCe-EEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc---ch----hhhcCCCC-----C
Confidence 76553 5566677644456 5677889999999999999999999999664323332 11 22222222 2
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
|+ +|+|.++..++.+|.++++++ +.+.+.... ++.+.++.+-.++.+.|+.-+. +.+.+...++.+.++++.+
T Consensus 252 i~--~~gK~l~gG~~p~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~ 326 (404)
T d2byla1 252 IV--LLGKALSGGLYPVSAVLCDDD-IMLTIKPGEHFSTYGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELM 326 (404)
T ss_dssp EE--EECGGGGTTSSCCEEEEECHH-HHTTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred EE--EECchhhCCCccceeeeechh-hhhccCCCCCCcCCCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHH
Confidence 22 889999843389999999887 776665432 2666778888888887842221 2345556666556655544
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=3.1e-07 Score=96.09 Aligned_cols=143 Identities=19% Similarity=0.130 Sum_probs=102.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||-+|-|.|..+..+.+..+..+|+.+|||+++++.|++....+.- ..-.+|++++.+|...+.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~------------~~~d~r~~i~~~D~~~~l 142 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG------------KLDDPRVDVQVDDGFMHI 142 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT------------TTTSTTEEEEESCSHHHH
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcc------------cccCCCeEEEechHHHHH
Confidence 46899999999999999988766667999999999999999987644321 011368999999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
...+.+||+|+.+++--..+... +. -..+++.+.+.|+|||+++..
T Consensus 143 ~~~~~~yDvIi~D~~~p~~~~~~-----------------------L~-----------t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 143 AKSENQYDVIMVDSTEPVGPAVN-----------------------LF-----------TKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp HTCCSCEEEEEESCSSCCSCCCC-----------------------CS-----------TTHHHHHHHHHEEEEEEEEEE
T ss_pred hhcCCCCCEEEEcCCCCCCcchh-----------------------hc-----------cHHHHHHHHhhcCCCceEEEe
Confidence 76666899999875532221111 00 117899999999999999998
Q ss_pred eCCCC-cHHHHHHH---HHHCCCeEEEEEehhhh
Q 043334 190 MGGRP-GQGVCKRL---FERRGFRVDKLWQTKIL 219 (903)
Q Consensus 190 ~~~~~-~~~~l~~l---l~~~gf~~~~~~~~~~~ 219 (903)
.+... ....+..+ +++. |..+..+...++
T Consensus 189 ~~s~~~~~~~~~~i~~tl~~~-F~~v~~y~~~vP 221 (274)
T d1iy9a_ 189 TDNPWFTPELITNVQRDVKEI-FPITKLYTANIP 221 (274)
T ss_dssp CCCTTTCHHHHHHHHHHHHTT-CSEEEEEEECCT
T ss_pred cCCccccHHHHHHHHHhhhhh-cCceEEEEEEee
Confidence 76533 33333333 3333 777777665543
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.57 E-value=1.2e-06 Score=94.70 Aligned_cols=214 Identities=11% Similarity=0.059 Sum_probs=141.6
Q ss_pred CCCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCc
Q 043334 627 LPIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSN 706 (903)
Q Consensus 627 ~~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y 706 (903)
.+.++.|++++.+..-. +...-..++.+.+.+.+++.++.+.+ .+++++|++.++.+++..++.+||+|++..-++
T Consensus 9 ~~v~~~V~~am~~~~~~-hr~~~f~~i~~~~~~~l~~ll~~~~~---~i~~~gsgT~a~e~~~~nl~~~g~~vlv~~~G~ 84 (348)
T d1iuga_ 9 VRLHPKALEALARPQLH-HRTEAAREVFLKARGLLREAFRTEGE---VLILTGSGTLAMEALVKNLFAPGERVLVPVYGK 84 (348)
T ss_dssp CCCCHHHHHHHHSCCCC-TTSHHHHHHHHHHHHHHHHHHTCSSE---EEEEESCHHHHHHHHHHHHCCTTCEEEEEECSH
T ss_pred CCCCHHHHHHhcCCCCC-CCCHHHHHHHHHHHHHHHHHhCCCCC---EEEEeCchHHHHHHHHHhcccccccceeecchH
Confidence 35678888876542111 11112234456677778888886544 789999999999999999999999998888775
Q ss_pred HH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhC--CcE
Q 043334 707 GN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKY--GAR 782 (903)
Q Consensus 707 ~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~--~i~ 782 (903)
.+ +...++.+|.++..+....... ++++. ......+.+++++.. +.||...+ +++|.++|+++ +.+
T Consensus 85 f~~~~~~~a~~~~~~~~~~~~~~g~~--~~~~~----~~~~~~~~v~~~h~e-TstG~~~~---i~~i~~~~~~~~~~~l 154 (348)
T d1iuga_ 85 FSERFYEIALEAGLVVERLDYPYGDT--PRPED----VAKEGYAGLLLVHSE-TSTGALAD---LPALARAFKEKNPEGL 154 (348)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTCC--CCTTT----SCCSSCSEEEEESEE-TTTTEECC---HHHHHHHHHHHCTTCE
T ss_pred HHHHHHHHHHhcCcccccccccCCCc--ccccc----ccccCCCeeEEEecc-hhhhhhcc---HHHHHHHHHhhhccce
Confidence 44 4556788899888888754333 23222 122333589999887 99999999 66667777766 578
Q ss_pred EEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc-ccccceeeEEEeCcHHHHHHHHhC------
Q 043334 783 VVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM-LTGALKFGFLVLNHPQLVDAFSSF------ 855 (903)
Q Consensus 783 VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~-g~~GlRiG~lv~~~~~li~~l~~~------ 855 (903)
+++|.+-+ ++..+. + ++.. .-.+++.|--|.+ |.|| +|+++.+++ .++++...
T Consensus 155 ~~vDavss---~g~~~i---~-------~d~~----~iD~~~~~sqK~l~gppG--~~~v~~s~~-~le~~~~~~~~~dl 214 (348)
T d1iuga_ 155 VGADMVTS---LLVGEV---A-------LEAM----GVDAAASGSQKGLMCPPG--LGFVALSPR-ALERLKPRGYYLDL 214 (348)
T ss_dssp EEEECTTT---BTTBCC---C-------SGGG----TCSEEEEESSSTTCCCSC--EEEEEECHH-HHHTCCCCSSTTCH
T ss_pred eechhhhc---cccccc---c-------cccc----cCCEEEeccccceecCCc--eeeeeechH-HHhhhcccccccch
Confidence 88898763 222221 0 1111 2567888999999 7788 599999876 55543211
Q ss_pred ----------CCCCCCcHHHHHHHHHHHh
Q 043334 856 ----------PGLSKPHSTVRYAIKKLLG 874 (903)
Q Consensus 856 ----------~~~~~~s~~~Q~aa~~~L~ 874 (903)
.....++...-++...+|+
T Consensus 215 ~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~ 243 (348)
T d1iuga_ 215 ARELKAQKEGESAWTPAINLVLAVAAVLE 243 (348)
T ss_dssp HHHHHHHTTTCCSSCCCHHHHHHHHHHHH
T ss_pred hhhhhhhccCcccccccchHHHHHHHHHH
Confidence 1134556666666667773
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=2.4e-08 Score=103.07 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=85.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
...+|+|+|||+|.+++.+++++|+.+++++|+.+ .++.++ ..+++++..+|+.+..
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~----------------------~~~r~~~~~~d~~~~~ 137 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP----------------------SYPGVEHVGGDMFVSI 137 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC----------------------CCTTEEEEECCTTTCC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc----------------------cCCceEEecccccccC
Confidence 35789999999999999999999999999999954 332211 1368999999998754
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
+. .|+++. ....+ +...+...++++++++.|+|||++++.
T Consensus 138 P~----ad~~~l-------------~~vlh-----------------------~~~d~~~~~iL~~~~~al~pgg~~li~ 177 (243)
T d1kyza2 138 PK----ADAVFM-------------KWICH-----------------------DWSDEHCLKFLKNCYEALPDNGKVIVA 177 (243)
T ss_dssp CC----CSCEEC-------------SSSST-----------------------TSCHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred CC----cceEEE-------------EEEee-----------------------cCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 32 344431 00111 112233447899999999999988872
Q ss_pred eC-----------------------------CCCcHHHHHHHHHHCCCeEEEEE
Q 043334 190 MG-----------------------------GRPGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 190 ~~-----------------------------~~~~~~~l~~ll~~~gf~~~~~~ 214 (903)
.. ........+++++++||+.++++
T Consensus 178 d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~ 231 (243)
T d1kyza2 178 ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 231 (243)
T ss_dssp ECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEE
T ss_pred EEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEE
Confidence 11 11235567889999999988874
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=2.9e-07 Score=96.43 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=95.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+.++||.+|+|.|..+..+.+ ++..+|+++|+|+++++.|++-...+.- ..+.......+|++++.+|...+.
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~------~~~~~~~~~d~rv~i~~~Da~~~l 144 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNG------LLEAMLNGKHEKAKLTIGDGFEFI 144 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTT------HHHHHHTTCCSSEEEEESCHHHHH
T ss_pred CCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccc------hhhhhhccCCCCceEEEChHHHHH
Confidence 468999999999999988775 5667999999999999999976532210 000001112468999999999886
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
... .+||+|+.+++.-..+. .. +. -..+++.+.+.|+|||++++.
T Consensus 145 ~~~-~~yDvIi~D~~~~~~~~-----~~------------------L~-----------t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 145 KNN-RGFDVIIADSTDPVGPA-----KV------------------LF-----------SEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp HHC-CCEEEEEEECCCCC----------------------------TT-----------SHHHHHHHHHHEEEEEEEEEE
T ss_pred hcc-CCCCEEEEeCCCCCCCc-----cc------------------cc-----------CHHHHHhhHhhcCCCceEEEe
Confidence 544 48999997654321111 00 00 127899999999999999997
Q ss_pred eCCCC-cHHHHHHH---HHHCCCeEEEEEehh
Q 043334 190 MGGRP-GQGVCKRL---FERRGFRVDKLWQTK 217 (903)
Q Consensus 190 ~~~~~-~~~~l~~l---l~~~gf~~~~~~~~~ 217 (903)
.++.. ....+..+ +++. |..+..+...
T Consensus 190 ~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~ 220 (276)
T d1mjfa_ 190 AGSVYLFTDELISAYKEMKKV-FDRVYYYSFP 220 (276)
T ss_dssp EEETTTSHHHHHHHHHHHHHH-CSEEEEEEEC
T ss_pred cCCcchhHHHHHHHHHHHHhh-CCeeEEEEec
Confidence 65432 23333333 3333 7776665433
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=98.51 E-value=2.6e-06 Score=93.51 Aligned_cols=258 Identities=9% Similarity=0.016 Sum_probs=158.5
Q ss_pred CCCCCeEEccC--CCCCCC-CcHHHHHHHHHHHHccCC-CCC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDV--DQSFLP-IPSLVKAAIFESFARQNM-SES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~--g~p~~~-~p~~v~~al~~al~~y~~-~~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...||+.. +...++ -.|.+.+++.+.+.+... ... ..+.+..+++.+........+ .+.++++++++..
T Consensus 34 ~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~---~v~f~~sGseA~e 110 (387)
T d1vefa1 34 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELN---RVFPVNSGTEANE 110 (387)
T ss_dssp TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEE---EEEEESSHHHHHH
T ss_pred CCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccCCchHHHHHHHhhhhccccce---eeccccCchHHHH
Confidence 46788899854 445555 578899999988876322 222 245566677776664333323 7899988888888
Q ss_pred HHHHHhc--cCCCeEEEcCCCcHHHHHHH-HHcC------------CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEE
Q 043334 687 KLVLCCI--LEGGTLCFPAGSNGNYVSAA-RFLK------------ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 687 ~ll~~l~--~pGD~Vlv~~P~y~~~~~~~-~~~G------------~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vi 751 (903)
.++.... .....|+....+|-+....+ ...| ..+..+|. .|.+.|++.+.++ . +.+
T Consensus 111 ~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~-------~d~~~l~~~~~~~-i-Aav 181 (387)
T d1vefa1 111 AALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-------NDVEALKRAVDEE-T-AAV 181 (387)
T ss_dssp HHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-------TCHHHHHHHCCTT-E-EEE
T ss_pred HHHHHHHhhcccceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCC-------CCHHHHHHhcCCC-e-EEE
Confidence 8776542 22357777777664432222 2222 12333332 3688999988654 3 455
Q ss_pred EECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 752 ISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 752 l~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
|.-|-+.-.|. ..+.+.+++|.++|++||+++|.||+..++--.|.. +. ...++-.| . +-+++|.
T Consensus 182 i~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~---~~----~~~~~v~P-----D--i~~~gK~ 247 (387)
T d1vefa1 182 ILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKR---FA----FEHFGIVP-----D--ILTLAKA 247 (387)
T ss_dssp EECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS---ST----HHHHTCCC-----S--EEEECGG
T ss_pred EEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCC---cc----cccCCcCC-----c--eeeeccc
Confidence 66675333454 577899999999999999999999999765222322 11 22222223 1 3356788
Q ss_pred cccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 831 MLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
++ .|+-+|.+++.++ ..+.+.... .+.+.++.+-.++.+.|+.-.. ..+.+.+.++-+.++++.+
T Consensus 248 l~-gG~~~~~~~~~~~-~~~~~~~~~~g~T~~gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~ 314 (387)
T d1vefa1 248 LG-GGVPLGVAVMREE-VARSMPKGGHGTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLR 314 (387)
T ss_dssp GG-TTSSCEEEEEEHH-HHHTSCTTSSCCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHH
T ss_pred CC-CCcccccccccee-eeeccccCCccccCCCCcchhhhcccchhhccc--ccccchHhhhhHHHHHHHH
Confidence 87 6888888888877 666554332 2666778888888777742211 2233445555555555443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4.3e-07 Score=90.87 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=99.1
Q ss_pred hhHHHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhc
Q 043334 13 WSFTFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKK 92 (903)
Q Consensus 13 w~~~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~ 92 (903)
|...+++.+...+. .++.+|+|+|||.|.-++.+|-.+|..+|+.+|.+..-+...++-....++
T Consensus 50 ~~rHi~DSl~~~~~--~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------------- 114 (207)
T d1jsxa_ 50 LVRHILDSIVVAPY--LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------- 114 (207)
T ss_dssp HHHHHHHHHHHGGG--CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHhcchHhhhhh--hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-------------
Confidence 77777777665543 456799999999999999999999999999999999999999888877777
Q ss_pred ccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHH
Q 043334 93 TLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 172 (903)
Q Consensus 93 ~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~ 172 (903)
++++++++...+.... .+||+|++- |+.. +..+
T Consensus 115 ---~nv~v~~~R~E~~~~~--~~fD~V~sR--------------------------------A~~~----------~~~l 147 (207)
T d1jsxa_ 115 ---ENIEPVQSRVEEFPSE--PPFDGVISR--------------------------------AFAS----------LNDM 147 (207)
T ss_dssp ---SSEEEEECCTTTSCCC--SCEEEEECS--------------------------------CSSS----------HHHH
T ss_pred ---cceeeeccchhhhccc--cccceehhh--------------------------------hhcC----------HHHH
Confidence 5899999999887543 379999841 1111 3377
Q ss_pred HHHHhhcccCCcEEEEEeCCCCcHHH
Q 043334 173 VEEGIGVIKPSGIMIFNMGGRPGQGV 198 (903)
Q Consensus 173 l~~~~~~LkpgG~ll~~~~~~~~~~~ 198 (903)
++-+...++++|.+++.-|.....+.
T Consensus 148 l~~~~~~l~~~g~~~~~KG~~~~eEl 173 (207)
T d1jsxa_ 148 VSWCHHLPGEQGRFYALKGQMPEDEI 173 (207)
T ss_dssp HHHHTTSEEEEEEEEEEESSCCHHHH
T ss_pred HHHHHHhcCCCcEEEEECCCCHHHHH
Confidence 89999999999999998887655443
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=3.1e-06 Score=94.00 Aligned_cols=269 Identities=9% Similarity=0.050 Sum_probs=157.8
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCC--CC-chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMS--ES-EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~--~G-~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...||+..| ...++ .++.+.+++.+.+.++... .+ ..+....+++.+.+...-... + .++++++++++
T Consensus 36 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~-~-~v~f~~sGseA 113 (425)
T d1sffa_ 36 DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFA-K-KTLLVTTGSEA 113 (425)
T ss_dssp ETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSC-E-EEEEESSHHHH
T ss_pred eCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhccc-c-eeeeeccccch
Confidence 3567889998765 55555 5788999999888764432 22 234566678888776533222 2 68888888888
Q ss_pred HHHHHHHhcc--CCCeEEEcCCCcHHHHHH-HHHcCC-------------EEEEecCC--CCCCcccCH-HHHHHHh---
Q 043334 685 FNKLVLCCIL--EGGTLCFPAGSNGNYVSA-ARFLKA-------------NIVNIPTE--SEVGFKMTE-KTLVTIL--- 742 (903)
Q Consensus 685 l~~ll~~l~~--pGD~Vlv~~P~y~~~~~~-~~~~G~-------------~vv~v~~~--~~~~f~ld~-~~L~~~l--- 742 (903)
...++..... .-..|+...-+|-+.... ....|. .....+.. ..+.+.... ...++.+
T Consensus 114 ~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (425)
T d1sffa_ 114 VENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKND 193 (425)
T ss_dssp HHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhhhhhcccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhc
Confidence 8877665422 224677666666553332 222221 11222211 111111111 1111111
Q ss_pred hcCCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCce
Q 043334 743 ETVKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNV 821 (903)
Q Consensus 743 ~~~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~v 821 (903)
......+.++.-|-+.-.|. ..+.+.+++|.++|+++|+++|.||+..++-=.+..+ ....++-.| .
T Consensus 194 ~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~-------a~~~~gv~P-----D 261 (425)
T d1sffa_ 194 AAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLF-------AMEQMGVAP-----D 261 (425)
T ss_dssp CCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-------GGGGTTSCC-----S
T ss_pred ccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhh-------HHHhcCCCc-----c
Confidence 11122356666676333454 5788999999999999999999999997543223221 122222222 2
Q ss_pred EEEccCchhcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Q 043334 822 SLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSK 899 (903)
Q Consensus 822 I~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~ 899 (903)
+-+++|.+| .|+.+|.++++++ +.+.+.... .+.+.++++-.++.+.|+.-+. +.+.+++..+-+.++++.+
T Consensus 262 --i~~~gK~l~-gG~P~~av~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~ 335 (425)
T d1sffa_ 262 --LTTFAKSIA-GGFPLAGVTGRAE-VMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLL 335 (425)
T ss_dssp --EEEECGGGG-TSSCCEEEEEEHH-HHTTSCTTSBCCSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred --ceecccccC-CCcceEEEEEcHH-HHHhhCCCCCCCCCCcCHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhh
Confidence 334899997 6899999999987 777665332 2677778888888888853221 2345555555555555543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=4.9e-07 Score=94.97 Aligned_cols=141 Identities=14% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||-+|-|.|..+..+.+..+..+|+.+||++++++.|++-+..+.- ....+|++++.+|...+.
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~------------~~~d~rv~i~~~Da~~~l 145 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI------------GYSSSKLTLHVGDGFEFM 145 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------GGGCTTEEEEESCHHHHH
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc------------ccCCCCceEEEccHHHHH
Confidence 46899999999999999988766678999999999999999987643321 011369999999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+|+.+++--..+ ... +. -..+++.+.+.|+|||++++.
T Consensus 146 ~~~~~~yDvIi~D~~~p~~~-----~~~------------------L~-----------t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 146 KQNQDAFDVIITDSSDPMGP-----AES------------------LF-----------KESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp HTCSSCEEEEEEECC---------------------------------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCCEEEEcCCCCCCc-----ccc------------------cc-----------cHHHHHHHHHhcCCCCeEEEe
Confidence 76666899999764321110 000 00 127899999999999999998
Q ss_pred eCCCC-cHHHHHH---HHHHCCCeEEEEEehh
Q 043334 190 MGGRP-GQGVCKR---LFERRGFRVDKLWQTK 217 (903)
Q Consensus 190 ~~~~~-~~~~l~~---ll~~~gf~~~~~~~~~ 217 (903)
.++.. ....++. .+++. |..+..+...
T Consensus 192 ~~s~~~~~~~~~~~~~tl~~~-F~~v~~y~~~ 222 (285)
T d2o07a1 192 GECQWLHLDLIKEMRQFCQSL-FPVVAYAYCT 222 (285)
T ss_dssp EECTTTCHHHHHHHHHHHHHH-CSEEEEEEEE
T ss_pred ccchhhhHHHHHHHHHHHHhc-CCeeeEEeee
Confidence 76533 3333333 34333 7777765554
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=98.42 E-value=1.3e-05 Score=89.06 Aligned_cols=271 Identities=10% Similarity=0.049 Sum_probs=162.4
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC--CCCc-hHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM--SESE-IDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~--~~G~-~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
...|...+|+..| ...++ -++.+.+++.+.+.+... ..+. .+....+++.+....+...+ .+.++++++++
T Consensus 39 D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~v~f~~sGseA 115 (429)
T d1s0aa_ 39 LSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLE---CVFLADSGSVA 115 (429)
T ss_dssp ETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCC---EEEEESSHHHH
T ss_pred ECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcc---eeeeccccccc
Confidence 3567789999666 44455 578899999988776432 2222 23344556666655544433 78888888888
Q ss_pred HHHHHHHhc-------cCCCeEEEcCCCcHH-HHHHHHHcC-------------CEEEEecCCCC-CCcc---cCHHHHH
Q 043334 685 FNKLVLCCI-------LEGGTLCFPAGSNGN-YVSAARFLK-------------ANIVNIPTESE-VGFK---MTEKTLV 739 (903)
Q Consensus 685 l~~ll~~l~-------~pGD~Vlv~~P~y~~-~~~~~~~~G-------------~~vv~v~~~~~-~~f~---ld~~~L~ 739 (903)
...++.... .+..+|+....+|-. +..+....| ......|.... .... -+.+.++
T Consensus 116 ~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (429)
T d1s0aa_ 116 VEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFA 195 (429)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHH
T ss_pred hhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhh
Confidence 887665442 122467666666544 322222221 11222222111 1111 2345555
Q ss_pred HHhhc-CCCcEEEEECCC-CCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCC
Q 043334 740 TILET-VKKPWVYISGPT-INPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTN 816 (903)
Q Consensus 740 ~~l~~-~~~~~vil~~P~-~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~ 816 (903)
+.+.. ....+.++.-|- ++--|. ..+++-+++|.++|++||+++|.||+..++--.+.. +. ....+-.|
T Consensus 196 ~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~---~~----~~~~~v~P- 267 (429)
T d1s0aa_ 196 RLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKL---FA----CEHAEIAP- 267 (429)
T ss_dssp HHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS---SG----GGGGTCCC-
T ss_pred hhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccc---cc----cccceecc-
Confidence 44432 222366677775 344444 578999999999999999999999999765322332 11 12222222
Q ss_pred CCCceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC-------CCCCCcHHHHHHHHHHHhcccccchhHHHHHHH
Q 043334 817 SSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP-------GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAE 889 (903)
Q Consensus 817 ~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~-------~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~ 889 (903)
. +-.++|.++..+..+|.+++.++ +.+.+..-. .+.+.++.+-.++.+.|+.-.. +.+.+++.+
T Consensus 268 ----D--i~~~gK~l~gG~~p~~av~~~~~-i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~ 338 (429)
T d1s0aa_ 268 ----D--ILCLGKALTGGTMTLSATLTTRE-VAETISNGEAGCFMHGPTFMGNPLACAAANASLAILES--GDWQQQVAD 338 (429)
T ss_dssp ----S--EEEECGGGGTSSSCCEEEEECHH-HHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred ----c--ccccccccccccccccchhhHHH-HHhccCCCCCcceeecCCCCCCcccchhhhcccccccc--ccccchhhH
Confidence 1 33467998755689999999988 888876421 2666778888888888853222 345666777
Q ss_pred HHHHHHHHHHHH
Q 043334 890 HIRNLESRSKRL 901 (903)
Q Consensus 890 ~r~~y~~Rr~~l 901 (903)
+-+.++++.+.+
T Consensus 339 ~g~~l~~~L~~l 350 (429)
T d1s0aa_ 339 IEVQLREQLAPA 350 (429)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHh
Confidence 777776665443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.40 E-value=1.3e-08 Score=104.94 Aligned_cols=78 Identities=29% Similarity=0.443 Sum_probs=65.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||||||+|.++..|++. +.+|+++|+|+++++.++++... .++++++++|+++..
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~~~------------------~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKLKL------------------NTRVTLIHQDILQFQ 88 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTTTT------------------CSEEEECCSCCTTTT
T ss_pred CCCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhhhh------------------ccchhhhhhhhhccc
Confidence 5689999999999999999998 67999999999998887755421 258999999999876
Q ss_pred cCCCCceeEEEECCCCCCC
Q 043334 110 RDHDIQLERIVGCIPQILN 128 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~ 128 (903)
.... .++.||+|.||...
T Consensus 89 ~~~~-~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 89 FPNK-QRYKIVGNIPYHLS 106 (245)
T ss_dssp CCCS-SEEEEEEECCSSSC
T ss_pred cccc-eeeeEeeeeehhhh
Confidence 5543 67889999999853
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=98.38 E-value=2.2e-06 Score=93.21 Aligned_cols=197 Identities=10% Similarity=0.101 Sum_probs=135.1
Q ss_pred CCcHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHhccCCCeEEEcCCCcH
Q 043334 628 PIPSLVKAAIFESFARQNMSESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCCILEGGTLCFPAGSNG 707 (903)
Q Consensus 628 ~~p~~v~~al~~al~~y~~~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l~~pGD~Vlv~~P~y~ 707 (903)
..+++|++++....- .+.+.-..++.+.+++.+++.+|.+.. + .|+++.|++.++..++..++.+|+.+++..-.+.
T Consensus 27 ~~~~~V~~Am~~~~~-~hr~~ef~~i~~~~r~~L~~ll~~~~~-~-~i~~~gsgT~a~ea~~~~l~~~~~~vl~~~~g~~ 103 (388)
T d2ch1a1 27 NCSKRVLTAMTNTVL-SNFHAELFRTMDEVKDGLRYIFQTENR-A-TMCVSGSAHAGMEAMLSNLLEEGDRVLIAVNGIW 103 (388)
T ss_dssp CCCHHHHHHTTSCCC-CTTCHHHHHHHHHHHHHHHHHHTCCCS-C-EEEESSCHHHHHHHHHHHHCCTTCEEEEEESSHH
T ss_pred CCCHHHHHHhCcCCC-CCCCHHHHHHHHHHHHHHHHHhCCCCC-e-EEEEcCcHHHHHHHHHHHhccccccccccccccc
Confidence 457888877533210 111122345667788888888887532 2 5777888999999999999999999988877766
Q ss_pred HHH--HHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEE
Q 043334 708 NYV--SAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNKEIENILTVCAKYGARVVI 785 (903)
Q Consensus 708 ~~~--~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~ 785 (903)
... ..++..+...+.+....... .+.+..++.......+++.+++-+ |.||...+ +++|.++|+++++.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-t~tG~~~~---~~~i~~~~~~~~~~~~v 177 (388)
T d2ch1a1 104 AERAVEMSERYGADVRTIEGPPDRP--FSLETLARAIELHQPKCLFLTHGD-SSSGLLQP---LEGVGQICHQHDCLLIV 177 (388)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSC--CCHHHHHHHHHHHCCSEEEEESEE-TTTTEECC---CTTHHHHHHHTTCEEEE
T ss_pred cccchhhhhhhcccccccccccccc--cchhhhhhhhccCCcceeeeeecc-cccccccc---hhhhcchhccccceeee
Confidence 544 44577788888888765333 566666666554444688888887 99999999 77788888999999999
Q ss_pred ecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcc-cccceeeEEEeCcHHHHHHHH
Q 043334 786 DTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKML-TGALKFGFLVLNHPQLVDAFS 853 (903)
Q Consensus 786 DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g-~~GlRiG~lv~~~~~li~~l~ 853 (903)
|.+.+. ...+. . +++. +..+++.|--|.++ .+| +|+++.... .++.+.
T Consensus 178 D~~ss~---g~~pi---d-------~~~~----~~d~~~~s~~K~~~gp~G--~g~~~~~~~-~~~~~~ 226 (388)
T d2ch1a1 178 DAVASL---CGVPF---Y-------MDKW----EIDAVYTGAQKVLGAPPG--ITPISISPK-ALDVIR 226 (388)
T ss_dssp ECTTTB---TTBCC---C-------TTTT----TCCEEECCCC-CCCCCSS--CEEEEECHH-HHHHHH
T ss_pred eeeecc---ccccc---c-------hhcc----CceEEEEccccccCCCCe--EEEEeccHH-HHHhhh
Confidence 998742 22221 0 1121 35678888888774 344 677777766 555444
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=98.38 E-value=2.7e-05 Score=85.57 Aligned_cols=266 Identities=9% Similarity=0.037 Sum_probs=151.6
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCCCC--CchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNMSE--SEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~~~--G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...||+..| ...++ -.|.+.+++.+.+.+..... ......+.+++.+.+..+. + .+.+++.++++..
T Consensus 36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~v~~~~sgs~a~~ 110 (404)
T d1z7da1 36 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGY----D-KVLMMNTGAEANE 110 (404)
T ss_dssp TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTC----S-EEEEESSHHHHHH
T ss_pred CCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccccchHHHHHHHHhhhhcccc----c-eeeeeccccchHH
Confidence 467788998655 44444 47889999988887643322 2334456666667766553 2 5767777777766
Q ss_pred HHHHHhc----------cCCCeEEEcCCCcHHHHHHHHHc-CCEE---EEecCCCCC--CcccCHHHHHHHhhcCCCcEE
Q 043334 687 KLVLCCI----------LEGGTLCFPAGSNGNYVSAARFL-KANI---VNIPTESEV--GFKMTEKTLVTILETVKKPWV 750 (903)
Q Consensus 687 ~ll~~l~----------~pGD~Vlv~~P~y~~~~~~~~~~-G~~v---v~v~~~~~~--~f~ld~~~L~~~l~~~~~~~v 750 (903)
.++.... .....++...-+|.......... +... ...|..... .-.-+.+.++..+.+... +.
T Consensus 111 ~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i-Aa 189 (404)
T d1z7da1 111 TAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKDPNV-CA 189 (404)
T ss_dssp HHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTTCHHHHHHHHTSTTE-EE
T ss_pred HHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccchHHHHHHHhcCCCE-EE
Confidence 6554431 11225666666665543332211 1110 011111000 001246777777766554 66
Q ss_pred EEECCCCCCcccC-CCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCch
Q 043334 751 YISGPTINPTGLL-YSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSL 829 (903)
Q Consensus 751 il~~P~~NPTG~v-~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK 829 (903)
++.-|-+...|.+ .+.+.+++|.++|+++|+++|.||+..++-=.|.. +. ...++-.| .|+ +++|
T Consensus 190 vi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~---~~----~e~~gv~P-----Div--t~gK 255 (404)
T d1z7da1 190 FIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL---LC----VHHYNVKP-----DVI--LLGK 255 (404)
T ss_dssp EEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS---SG----GGGGTCCC-----SEE--EECG
T ss_pred EEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCccccc---cc----ccccCCCC-----CEE--EEcc
Confidence 6667764455654 56777999999999999999999999654322332 11 22232222 222 8899
Q ss_pred hcccccceeeEEEeCcHHHHHHHHhCC--CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Q 043334 830 KMLTGALKFGFLVLNHPQLVDAFSSFP--GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKR 900 (903)
Q Consensus 830 ~~g~~GlRiG~lv~~~~~li~~l~~~~--~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~ 900 (903)
.++..+.-+|.+++.++ +.+.+.... .+++.++++-.++.+.|+.-.. +.+.+++.+..+.+.++...
T Consensus 256 ~l~gG~~p~~~v~~~~~-i~~~~~~~~~~~T~~gnpl~~aaa~a~L~~~~~--~~~~~~~~~~~~~~~~~l~~ 325 (404)
T d1z7da1 256 ALSGGHYPISAVLANDD-IMLVIKPGEHGSTYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKR 325 (404)
T ss_dssp GGGTTSSCCEEEEECHH-HHTTCCTTCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCcccccchHH-HHccCCCCCcCcCCCCCcchhhhhhhhhhhhhc--chhhhhhccchhHHHHHHHH
Confidence 99844488999999987 777665432 2667788888888888853121 23445555555555555443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.37 E-value=3.4e-06 Score=89.75 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=108.2
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+|.+|||++||.|.=+..++.... ...+++.|+++.-++..++|+...|. .++.....|....
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~----------------~~i~~~~~d~~~~ 179 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV----------------LNVILFHSSSLHI 179 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC----------------CSEEEESSCGGGG
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh----------------hcccccccccccc
Confidence 688999999999999999888764 45899999999999999999998887 4788888888776
Q ss_pred ccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 109 CRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
.... ..||.|+..+|.....-...-+........++. ..-..+..+++..+.+.|||||.++.
T Consensus 180 ~~~~-~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~----------------~~l~~~Q~~iL~~a~~~lk~gG~lVY 242 (313)
T d1ixka_ 180 GELN-VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDI----------------KFCQGLQMRLLEKGLEVLKPGGILVY 242 (313)
T ss_dssp GGGC-CCEEEEEEECCTTSTTTCC--------CCHHHH----------------HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccc-ccccEEEEccccccCCceeeccchhhhhhhhHH----------------HHHHHHHHHHHHhhhheeCCCcEEEE
Confidence 5433 389999999998865443222211111111100 11123455899999999999999888
Q ss_pred EeCC---CCcHHHHHHHHHHCCCeEEEE
Q 043334 189 NMGG---RPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 189 ~~~~---~~~~~~l~~ll~~~gf~~~~~ 213 (903)
.+-+ .....+++..+++.++..+..
T Consensus 243 sTCSl~~eENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 243 STCSLEPEENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp EESCCCGGGTHHHHHHHHHHSSEEEECC
T ss_pred eeccCChHhHHHHHHHHHhcCCCEEeec
Confidence 6554 446677788888887766543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.36 E-value=7.4e-07 Score=94.31 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=96.8
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..++||-+|-|.|..+..+.+..+..+|+.+|+|+++++.|++-+..+.- ..-.+|++++.+|..++.
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~------------~~~dprv~i~i~Da~~~l 173 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSC------------GFSHPKLDLFCGDGFEFL 173 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSG------------GGGCTTEEEECSCHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcc------------ccCCCCeEEEEchHHHHH
Confidence 46799999999999999988765557999999999999999986543211 011368999999999987
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
.....+||+||.+++--..+. . .+ .-..|++.+.+.|+|||+++..
T Consensus 174 ~~~~~~yDvII~D~~dp~~~~-----~------------------~L-----------~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 174 KNHKNEFDVIITDSSDPVGPA-----E------------------SL-----------FGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp HHCTTCEEEEEECCC-----------------------------------------------HHHHHHHHEEEEEEEEEE
T ss_pred HhCCCCCCEEEEcCCCCCCcc-----h------------------hh-----------hhHHHHHHHHhhcCCCcEEEEe
Confidence 666668999997644211110 0 00 0127899999999999999998
Q ss_pred eCCCC-cHHHHHH---HHHHCCCeEEEEEehh
Q 043334 190 MGGRP-GQGVCKR---LFERRGFRVDKLWQTK 217 (903)
Q Consensus 190 ~~~~~-~~~~l~~---ll~~~gf~~~~~~~~~ 217 (903)
.+... ....+.. .+++. |..+..+...
T Consensus 220 ~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~~~ 250 (312)
T d2b2ca1 220 GESVWLHLPLIAHLVAFNRKI-FPAVTYAQSI 250 (312)
T ss_dssp CCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEE
T ss_pred cCChHHhHHHHHHHHHHhhhc-cceEEEeeec
Confidence 76543 2333233 33333 7777765554
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=1.8e-06 Score=90.65 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=103.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||+++|.|.=+..++....+.+|+++|+++.-++..++|++..|+ .++.....|.....
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~----------------~~~~~~~~~~~~~~ 165 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM----------------KATVKQGDGRYPSQ 165 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC----------------CCEEEECCTTCTHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc----------------cceeeeccccccch
Confidence 67899999999999999999887678999999999999999999999887 34555555544332
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
....+.||.|+..+|.....-...-+.....+.+.+ + ..-..+-.++++.+.+.|||||+++..
T Consensus 166 ~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~----~------------~~l~~lQ~~iL~~a~~~lk~gG~lvYs 229 (284)
T d1sqga2 166 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRD----I------------PELAQLQSEILDAIWPHLKTGGTLVYA 229 (284)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTH----H------------HHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred hcccccccEEEEeccccccCccccccchhhccccch----h------------hHHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 222347999999999875432221111111111110 0 111233458999999999999999986
Q ss_pred eCC---CCcHHHHHHHHHHC-CCeE
Q 043334 190 MGG---RPGQGVCKRLFERR-GFRV 210 (903)
Q Consensus 190 ~~~---~~~~~~l~~ll~~~-gf~~ 210 (903)
+-+ ....+.++..++++ +|+.
T Consensus 230 TCS~~~~ENE~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 230 TCSVLPEENSLQIKAFLQRTADAEL 254 (284)
T ss_dssp ESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred eecCchhhCHHHHHHHHHhCCCcEE
Confidence 654 34667778888875 4654
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=1.8e-06 Score=84.47 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=98.2
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++..++|..||.|..+..+.+. +.+|+|+|.++++++.|++.. .+++.++++++.++
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~--------------------~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLH--------------------LPGLTVVQGNFRHL 74 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTC--------------------CTTEEEEESCGGGH
T ss_pred CCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhcc--------------------ccceeEeehHHHHH
Confidence 36789999999999999999886 569999999999999987531 25799999987665
Q ss_pred cc----CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCc
Q 043334 109 CR----DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSG 184 (903)
Q Consensus 109 ~~----~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG 184 (903)
.. ...+++|.|+.+..+... + .. +...++......++.+...|+|||
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~-------q-ld---------------------~~~re~~~~~~~L~~~~~~lk~gg 125 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSF-------H-LD---------------------DPSDELNALKEFLEQAAEVLAPGG 125 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHH-------H-HH---------------------CGGTHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHcCCCccCEEEEEccCCHH-------H-hh---------------------cchHHHHHHHHHHHHHHhhhCCCC
Confidence 21 112479999977555421 0 00 123456667789999999999999
Q ss_pred EEEEEeCCCCcHHHHHHHHHHCCCeE
Q 043334 185 IMIFNMGGRPGQGVCKRLFERRGFRV 210 (903)
Q Consensus 185 ~ll~~~~~~~~~~~l~~ll~~~gf~~ 210 (903)
.+++..........+++.+++.+++.
T Consensus 126 ~~~ii~fhs~Ed~ivk~~~~e~~~k~ 151 (182)
T d1wg8a2 126 RLVVIAFHSLEDRVVKRFLRESGLKV 151 (182)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHCSEE
T ss_pred eEEEEecccchhHHHHHHHhhcccee
Confidence 99987765555566778888877664
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=5.1e-07 Score=94.34 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=66.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++..|||+|+|+|.++..|++. +.+|+++|+|+.+++..++++..+.. .++++++.+|++..
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~~~---------------~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQGTPV---------------ASKLQVLVGDVLKT 82 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTTSTT---------------GGGEEEEESCTTTS
T ss_pred CCCCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhhhcc---------------ccchhhhHHHHhhh
Confidence 35789999999999999999998 57999999999999999988754432 25899999999887
Q ss_pred ccCCCCceeEEEECCCCC
Q 043334 109 CRDHDIQLERIVGCIPQI 126 (903)
Q Consensus 109 ~~~~~~~fD~Iv~NpPy~ 126 (903)
..+ .++.||+|+||.
T Consensus 83 ~~~---~~~~vV~NLPY~ 97 (278)
T d1zq9a1 83 DLP---FFDTCVANLPYQ 97 (278)
T ss_dssp CCC---CCSEEEEECCGG
T ss_pred hhh---hhhhhhcchHHH
Confidence 543 467899999997
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.28 E-value=2e-06 Score=85.11 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=75.6
Q ss_pred CCCeEEEeCCccCH----HHHHHHHHhC----CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcc--------------
Q 043334 30 KDKTVAELGCGNGW----ITIAIAEKWL----PSKVYGLDINPRAIRISWINLYLNALDEKGQPIY-------------- 87 (903)
Q Consensus 30 ~~~~VLDlGCGtG~----lsi~la~~~~----~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~-------------- 87 (903)
+..+|+++|||||. +++.+.+... ..+|+|+|+|+.+++.|++....... ..+.+..
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~-~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSE-LKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGG-GTTSCHHHHHHHEEECCTTSC
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHH-HhhhhHHHHhhceeecCCCcc
Confidence 34699999999997 4444444322 23799999999999999864322110 0000000
Q ss_pred --hhhhcccCCcEEEEEccccccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhcccccccccccccccc
Q 043334 88 --DAEKKTLLDRVEFHESDLLAYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFG 165 (903)
Q Consensus 88 --~~~~~~~~~~v~~~~gDl~~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g 165 (903)
..........+.+...+.........++||+|+|-= -..|+..
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRN------VLiYf~~----------------------------- 147 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN------VMIYFDK----------------------------- 147 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS------SGGGSCH-----------------------------
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeeh------hHHhcCH-----------------------------
Confidence 000111223567777777665443345899999621 1222222
Q ss_pred HHHHHHHHHHHhhcccCCcEEEEEeCC
Q 043334 166 LGLIARAVEEGIGVIKPSGIMIFNMGG 192 (903)
Q Consensus 166 ~~~~~~~l~~~~~~LkpgG~ll~~~~~ 192 (903)
+..+++++..++.|+|||.+++-...
T Consensus 148 -~~~~~vl~~l~~~L~pGG~L~lG~sE 173 (193)
T d1af7a2 148 -TTQEDILRRFVPLLKPDGLLFAGHSE 173 (193)
T ss_dssp -HHHHHHHHHHGGGEEEEEEEEECTTC
T ss_pred -HHHHHHHHHHHHHhCCCcEEEEecCc
Confidence 22348899999999999998875443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=4.7e-06 Score=84.75 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=116.3
Q ss_pred chhHHHHHHhhcCCCC-CCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhh
Q 043334 12 DWSFTFYEGLNRHPDS-ILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAE 90 (903)
Q Consensus 12 ~w~~~~~~~L~~~~~~-~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~ 90 (903)
-|...+++.+...+-. ...+.+++|+|||.|.-++.+|-.+|..+|+.+|-+..-+...+.-....++
T Consensus 51 i~~rHi~DSl~~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L----------- 119 (239)
T d1xdza_ 51 VYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL----------- 119 (239)
T ss_dssp HHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------
T ss_pred HHHHhccchhhhhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-----------
Confidence 3777788876544431 1246799999999999999999989999999999999998888877777777
Q ss_pred hcccCCcEEEEEccccccccCC--CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHH
Q 043334 91 KKTLLDRVEFHESDLLAYCRDH--DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGL 168 (903)
Q Consensus 91 ~~~~~~~v~~~~gDl~~~~~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~ 168 (903)
.++.++++.+.++.... .++||+|++- |+..
T Consensus 120 -----~n~~i~~~R~E~~~~~~~~~~~~D~v~sR--------------------------------Ava~---------- 152 (239)
T d1xdza_ 120 -----ENTTFCHDRAETFGQRKDVRESYDIVTAR--------------------------------AVAR---------- 152 (239)
T ss_dssp -----SSEEEEESCHHHHTTCTTTTTCEEEEEEE--------------------------------CCSC----------
T ss_pred -----CCcEEEeehhhhccccccccccceEEEEh--------------------------------hhhC----------
Confidence 58999999887764322 2479999841 1111
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCCcHHH--HHHHHHHCCCeEEEEEehhhhccCCCcccCCCCcceeeeeecc
Q 043334 169 IARAVEEGIGVIKPSGIMIFNMGGRPGQGV--CKRLFERRGFRVDKLWQTKILQASEPFFASDTDISALVEIEKN 241 (903)
Q Consensus 169 ~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~--l~~ll~~~gf~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~e~~ 241 (903)
+..+++-+..++++||.+++.-|.....+. .++.+...|+....+....++.. ..-+.++.+++.
T Consensus 153 l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~--------~~~r~lv~i~K~ 219 (239)
T d1xdza_ 153 LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSFKLPIE--------ESDRNIMVIRKI 219 (239)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEEECTTT--------CCEEEEEEEEEC
T ss_pred HHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEEeCCCC--------CCCEEEEEEEEC
Confidence 337899999999999999998887654432 23456777888766533332111 223556777654
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=98.27 E-value=1.9e-05 Score=87.69 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=154.4
Q ss_pred CCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHccCC--CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHH
Q 043334 612 TPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQNM--SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFN 686 (903)
Q Consensus 612 ~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y~~--~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~ 686 (903)
..|...||+..| ...++ -++.+.+++.+.+.+... .....+....+++.+.+......+ .++++++++++..
T Consensus 38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~---~v~f~~sGseA~e 114 (431)
T d1zoda1 38 ADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLD---RALLLSTGAESNE 114 (431)
T ss_dssp TTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCC---EEEEESCHHHHHH
T ss_pred CCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccc---eeeecccccchHH
Confidence 467889999654 55555 578899999998876542 222344556677777775533333 7999999999988
Q ss_pred HHHHHhc--cCCCeEEEcCCCcHHHHHHHHHcC------------CEEEEecCCCC-------CCcccCH---HHHHHHh
Q 043334 687 KLVLCCI--LEGGTLCFPAGSNGNYVSAARFLK------------ANIVNIPTESE-------VGFKMTE---KTLVTIL 742 (903)
Q Consensus 687 ~ll~~l~--~pGD~Vlv~~P~y~~~~~~~~~~G------------~~vv~v~~~~~-------~~f~ld~---~~L~~~l 742 (903)
.++.... ...+.|+...-+|-+....+...+ .....++.... .....+. +.+...+
T Consensus 115 ~Alk~Ar~~t~r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (431)
T d1zoda1 115 AAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194 (431)
T ss_dssp HHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHH
Confidence 8776531 223567766666655333332211 11222222110 0000112 2332222
Q ss_pred h---cCCCcEEEEECCCCCCccc-CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCC
Q 043334 743 E---TVKKPWVYISGPTINPTGL-LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSS 818 (903)
Q Consensus 743 ~---~~~~~~vil~~P~~NPTG~-v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~ 818 (903)
. +.. .+.++.-|-+---|. ..+.+.+++|.++|++||+++|.||+..++--.|... .....+-.|
T Consensus 195 ~~~~~~~-iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~-------~~~~~gv~P--- 263 (431)
T d1zoda1 195 DRQSSGN-LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMF-------ACQRDGVTP--- 263 (431)
T ss_dssp HHHCCSC-EEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSS-------THHHHTCCC---
T ss_pred HHhcccc-ccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccccc-------ccccCCCCc---
Confidence 2 223 366677776222334 4688999999999999999999999997543233321 122222222
Q ss_pred CceEEEccCchhcccccceeeEEEeCcHHHHHHHHhCC----CCCCCcHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Q 043334 819 FNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFSSFP----GLSKPHSTVRYAIKKLLGLRERKARDLMNAVAEHIRNL 894 (903)
Q Consensus 819 ~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~~~~----~~~~~s~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y 894 (903)
. +-+++|.++ .|+-+|-+++.++ ..+.+.... .+.+.++.+-.++.+.|+.-.. +.+.+...++.+.+
T Consensus 264 --D--i~~~gK~l~-gG~p~~av~~~~~-~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l 335 (431)
T d1zoda1 264 --D--ILTLSKTLG-AGLPLAAIVTSAA-IEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRL 335 (431)
T ss_dssp --S--EEEECHHHH-TTSSCEEEEECHH-HHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred --c--hhccccccc-cccccceeeeeec-chhhhhcccccccCCCCCCcchHHHHHHHHHHhhh--hhhhHHHHHHHHHH
Confidence 1 345789997 7888999998887 666655432 2566677777777777642121 23445555555555
Q ss_pred HHHH
Q 043334 895 ESRS 898 (903)
Q Consensus 895 ~~Rr 898 (903)
.++.
T Consensus 336 ~~~l 339 (431)
T d1zoda1 336 RRGL 339 (431)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 4443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=98.26 E-value=2.3e-06 Score=94.65 Aligned_cols=204 Identities=9% Similarity=0.017 Sum_probs=132.6
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCC------CC-Cc---hHHHHHHHHHHHhhcCCCCCC-CCcEEecCchH
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNM------SE-SE---IDVTPSIQQYIKSNFGFPIDI-NAEFIYADCSQ 682 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~------~~-G~---~~lr~ala~~l~~~~G~~~~p-e~~I~vt~Gs~ 682 (903)
...|+|-.++|. +++.+++++...+.. |.- .+ |. .++.....+...+.||.+.+. --+|-.-+|+.
T Consensus 31 ~~~l~LIaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~ 108 (470)
T d1rv3a_ 31 RVGLELIASENF--ASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSP 108 (470)
T ss_dssp HSSEECCTTCCC--CCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHH
T ss_pred HcCceEecCCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCcc
Confidence 457888888876 467788887776643 321 12 21 222333345557778875221 01455667777
Q ss_pred HHHHHHHHHhccCCCeEEEcCCCcHHHHHH----------HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEE
Q 043334 683 SLFNKLVLCCILEGGTLCFPAGSNGNYVSA----------ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYI 752 (903)
Q Consensus 683 ~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~----------~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil 752 (903)
+.+. ++.++++|||+|+..+...+++... +.....+.+.++++++ ...+|.+++++.....++++|++
T Consensus 109 An~a-v~~all~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~-~~~IDyd~l~~~a~~~kPklIi~ 186 (470)
T d1rv3a_ 109 ANFA-VYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD-TGYIDYDRLEENARLFHPKLIIA 186 (470)
T ss_dssp HHHH-HHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTT-TCSBCHHHHHHHHHHHCCSEEEE
T ss_pred HHHH-HHHHhcCCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecc-cCcccHHHHHHHHHhhCcceEee
Confidence 6666 5789999999999987765544332 1122367889999864 45699999999888766555555
Q ss_pred ECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhc
Q 043334 753 SGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKM 831 (903)
Q Consensus 753 ~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~ 831 (903)
..-. +|- .++ ++++.++|.+.|.+|+.|-++- +|+-.+... +.+ +. -.|+..|..|++
T Consensus 187 G~S~-y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~------sPl---~~------aDvvt~tTHKtl 245 (470)
T d1rv3a_ 187 GTSC-YSR--NLD---YGRLRKIADENGAYLMADMAHISGLVVAGVVP------SPF---EH------CHVVTTTTHKTL 245 (470)
T ss_dssp CCSS-CCS--CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHHTSSC------CGG---GT------CSEEEEESSGGG
T ss_pred chhh-ccc--cCC---HHHHHHHHhccCCeEEecchhhhhhccccccC------Chh---he------eeeeeeehhhhc
Confidence 4443 553 455 6777778889999999999883 233333321 111 12 368999999998
Q ss_pred ccccceeeEEEeCc
Q 043334 832 LTGALKFGFLVLNH 845 (903)
Q Consensus 832 g~~GlRiG~lv~~~ 845 (903)
+|=|-|.|.+.+
T Consensus 246 --rGPrgGiI~~~~ 257 (470)
T d1rv3a_ 246 --RGCRAGMIFYRR 257 (470)
T ss_dssp --CCCSCEEEEEEC
T ss_pred --cCCcceEEEEcc
Confidence 588999999865
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=98.26 E-value=3.1e-06 Score=93.22 Aligned_cols=203 Identities=8% Similarity=-0.003 Sum_probs=121.7
Q ss_pred CCeEEccCCCCCCCCcHHHHHHHHHHHHc-cCCC------C-C---chHHHHHHHHHHHhhcCCCCCCCC--cEEecCch
Q 043334 615 SGLIHMDVDQSFLPIPSLVKAAIFESFAR-QNMS------E-S---EIDVTPSIQQYIKSNFGFPIDINA--EFIYADCS 681 (903)
Q Consensus 615 ~~~IdLs~g~p~~~~p~~v~~al~~al~~-y~~~------~-G---~~~lr~ala~~l~~~~G~~~~pe~--~I~vt~Gs 681 (903)
...|+|-.++|. +++.+++++...+.. |... + | ..++.....+..++.||.++. +| +|-.-+|+
T Consensus 27 ~~~l~LiaSEN~--~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a-~w~vNVqp~SGs 103 (463)
T d2a7va1 27 CRGLELIASENF--CSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPA-QWGVNVQPYSGS 103 (463)
T ss_dssp HHSEECCTTCCC--CCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTT-TEEEECCCSSHH
T ss_pred hcCeeEeccCCc--CCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCch-hccCCccccccH
Confidence 346888888875 467788877766643 3210 1 1 233444445667777888764 22 35566777
Q ss_pred HHHHHHHHHHhccCCCeEEEcCCCcHHHHHHH--------HHcC--CEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEE
Q 043334 682 QSLFNKLVLCCILEGGTLCFPAGSNGNYVSAA--------RFLK--ANIVNIPTESEVGFKMTEKTLVTILETVKKPWVY 751 (903)
Q Consensus 682 ~~al~~ll~~l~~pGD~Vlv~~P~y~~~~~~~--------~~~G--~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vi 751 (903)
.+.+. ++.+|++|||+|+..++..+++...- ...| .+.+++.++++ +..+|.+++++.....++++|+
T Consensus 104 ~An~a-v~~all~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~-~~~IDyd~~~~~a~~~kPklIi 181 (463)
T d2a7va1 104 PANLA-VYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPK-TGLIDYNQLALTARLFRPRLII 181 (463)
T ss_dssp HHHHH-HHHHHCCSCEECCC-------------------------------CCBCTT-TCSBCHHHHHHHHHHHCCSEEE
T ss_pred HHHHH-HHHHHcCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCC-CCcCcHHHHHHHHhhcCCceEE
Confidence 66665 58889999999998888777665332 1122 35566666653 4569999999998876655555
Q ss_pred EECCCCCCcccCCCHHHHHHHHHHHHhCCcEEEEecCCC-CCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchh
Q 043334 752 ISGPTINPTGLLYSNKEIENILTVCAKYGARVVIDTAFS-GLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLK 830 (903)
Q Consensus 752 l~~P~~NPTG~v~s~eel~eI~~ia~k~~i~VI~DeaY~-~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~ 830 (903)
+.... +|- .++ ++++.++|.+.|.+++.|-++- +|+-.+... +.+ +. -.|+..|.-|+
T Consensus 182 ~G~S~-y~r--~~d---~~~~reIad~vga~l~~D~aH~aGLIA~g~~~------sP~---~~------aDvvt~tTHKT 240 (463)
T d2a7va1 182 AGTSA-YAR--LID---YARMREVCDEVKAHLLADMAHISGLVAAKVIP------SPF---KH------ADIVTTTTHKT 240 (463)
T ss_dssp ECCSS-CCS--CCC---HHHHHHHHHHTTCEEEEECGGGHHHHHTTSSC------CGG---GT------CSEEEEESSGG
T ss_pred ecccc-ccc--ccC---HHHHHHHhhcccceEEechhhhhHHhhhhhhc------Chh---hh------hhhhhchhhhh
Confidence 55443 553 445 6777777888999999999883 333333321 111 12 35788899999
Q ss_pred cccccceeeEEEeCc
Q 043334 831 MLTGALKFGFLVLNH 845 (903)
Q Consensus 831 ~g~~GlRiG~lv~~~ 845 (903)
| +|=|-|.|.+.+
T Consensus 241 l--rGPrgGiIl~~~ 253 (463)
T d2a7va1 241 L--RGARSGLIFYRK 253 (463)
T ss_dssp G--CSCSCEEEEEEC
T ss_pred h--cCCCceEEEEcc
Confidence 8 588999999875
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.26 E-value=2.6e-05 Score=87.63 Aligned_cols=178 Identities=12% Similarity=0.097 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHhhcCCCCC------CCCcEEecCchHHHHHHHHHHhcc----------CC---------CeEEEcCCC
Q 043334 651 IDVTPSIQQYIKSNFGFPID------INAEFIYADCSQSLFNKLVLCCIL----------EG---------GTLCFPAGS 705 (903)
Q Consensus 651 ~~lr~ala~~l~~~~G~~~~------pe~~I~vt~Gs~~al~~ll~~l~~----------pG---------D~Vlv~~P~ 705 (903)
..+...+.+|+++.+|.+.. .+..-++|+|++++....+.+-.+ +| -.|++++-+
T Consensus 112 t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~ 191 (476)
T d1js3a_ 112 TELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA 191 (476)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccc
Confidence 45667889999999998642 112456777766665555533211 11 157888999
Q ss_pred cHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcC-----CCcEEEEECCCCCCcccCCCHHHHHHHHHHHHhCC
Q 043334 706 NGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETV-----KKPWVYISGPTINPTGLLYSNKEIENILTVCAKYG 780 (903)
Q Consensus 706 y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~-----~~~~vil~~P~~NPTG~v~s~eel~eI~~ia~k~~ 780 (903)
+.....++...|..++.+|+++ ++.+|+++|++.+++. .+-+|+.+..+ +.||.+=+ +++|.++|++||
T Consensus 192 H~Si~ka~~~lGl~~~~v~~d~--~~~md~~~L~~~i~~~~~~g~~p~~VvataGt-t~~G~iDp---l~~I~~i~~~~~ 265 (476)
T d1js3a_ 192 HSSVERAGLIGGVKLKAIPSDG--KFAMRASALQEALERDKAAGLIPFFVVATLGT-TSCCSFDN---LLEVGPICHEED 265 (476)
T ss_dssp CHHHHHHHHHHTCEEEEECCCT--TSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSC-TTTCCBCC---HHHHHHHHHHTT
T ss_pred cHHHHHHHHhcCceEEEeccCC--CCCcCHHHHHHHHHHHHhcCCCcEEEeecCCC-ccceeecc---HHHHHHHHHhcC
Confidence 9999999999999999999964 6789999999998652 12256667776 99999977 899999999999
Q ss_pred cEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcH
Q 043334 781 ARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHP 846 (903)
Q Consensus 781 i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~ 846 (903)
+|+.+|-+|++...-.... +..+..+.. -.-+..++.|.++.|. -+|.++..+.
T Consensus 266 ~wlHVDAA~Gg~~~~~~~~-----~~~~~gi~~------aDSit~d~HK~l~~P~-~~g~~l~r~~ 319 (476)
T d1js3a_ 266 IWLHVDAAYAGSAFICPEF-----RHLLNGVEF------ADSFNFNPHKWLLVNF-DCSAMWVKRR 319 (476)
T ss_dssp CEEEEECTTGGGGGGSTTT-----GGGGTTGGG------CSEEEECHHHHSSCCS-SCEEEEESCH
T ss_pred cEEEEecccchhhhhhcch-----hhhhcCCcc------cceeeecCccccccCC-cceeecccch
Confidence 9999999997654222211 112222222 2346678889887665 5677777765
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.22 E-value=4e-06 Score=88.05 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=87.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+.++||=+|-|.|..+..+.+..+..+|+++|+|+++++.|++-...+.- ....++++++.+|..+..
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~------------~~~~~r~~i~~~Da~~~l 147 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI------------GYEDPRVNLVIGDGVAFL 147 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------GGGSTTEEEEESCHHHHH
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc------------cccCCCcEEEEccHHHHH
Confidence 46899999999999999988866667999999999999999986543221 011468999999998887
Q ss_pred cCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEE
Q 043334 110 RDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIF 188 (903)
Q Consensus 110 ~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~ 188 (903)
... +++||+|+.+.+--. ..... +. -..+++.+.+.|+|||++++
T Consensus 148 ~~~~~~~yDvIi~D~~dp~-----~~~~~------------------L~-----------t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 148 KNAAEGSYDAVIVDSSDPI-----GPAKE------------------LF-----------EKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp HTSCTTCEEEEEECCCCTT-----SGGGG------------------GG-----------SHHHHHHHHHHEEEEEEEEE
T ss_pred hhccccCccEEEEcCCCCC-----Ccchh------------------hC-----------CHHHHHHHHHhcCCCcEEEE
Confidence 543 348999997543211 11100 00 12789999999999999999
Q ss_pred EeCCC
Q 043334 189 NMGGR 193 (903)
Q Consensus 189 ~~~~~ 193 (903)
..++.
T Consensus 194 q~~s~ 198 (290)
T d1xj5a_ 194 QAESL 198 (290)
T ss_dssp ECCCT
T ss_pred ecCCc
Confidence 87754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.22 E-value=1.9e-06 Score=93.71 Aligned_cols=119 Identities=16% Similarity=0.033 Sum_probs=87.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
++.+|||..||||..++..|+..+..+|++.|+|+++++.+++|++.|+.+.....- ..+.......+.+.+.|.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~-~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESK-GRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECS-SEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcccccccc-ccccccccceeEeehhhhhhhh
Confidence 467999999999999998888777779999999999999999999999863210000 0001112345788899987766
Q ss_pred cCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 110 RDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 110 ~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
......||+|..+| |-. + ..+++.+.+.++.||.+.+.
T Consensus 124 ~~~~~~fDvIDiDP-fGs-~----------------------------------------~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 124 AERHRYFHFIDLDP-FGS-P----------------------------------------MEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp HHSTTCEEEEEECC-SSC-C----------------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC-CCC-c----------------------------------------HHHHHHHHHHhccCCEEEEE
Confidence 55445799998664 321 0 15788899999999999995
Q ss_pred eC
Q 043334 190 MG 191 (903)
Q Consensus 190 ~~ 191 (903)
..
T Consensus 162 aT 163 (375)
T d2dula1 162 AT 163 (375)
T ss_dssp EC
T ss_pred ec
Confidence 44
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=1.7e-05 Score=83.41 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=97.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL-PSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~-~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
+|.+|||++||.|.-+..+|.... ..+|+++|+++.-++..++|+...|+ .++.+...|....
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~----------------~~~~~~~~d~~~~ 157 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV----------------SCCELAEEDFLAV 157 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC----------------CSEEEEECCGGGS
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc----------------cceeeeehhhhhh
Confidence 688999999999999999887654 56999999999999999999999987 5899999998876
Q ss_pred ccCC--CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 109 CRDH--DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 109 ~~~~--~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
.... .++||.|+.+||.....-....+.......++. .....-.....+++..+.. |+|||.+
T Consensus 158 ~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~--------------~~~~~l~~~Q~~il~~a~~-l~~gG~l 222 (293)
T d2b9ea1 158 SPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSP--------------VRLHALAGFQQRALCHALT-FPSLQRL 222 (293)
T ss_dssp CTTCGGGTTEEEEEECCCCCC--------------------------------CCHHHHHHHHHHHHHHHTT-CTTCCEE
T ss_pred cccccccceeeEEeecCcccchhhhcccchhhccCCcch--------------hhHHHHhhhhHHhHHHhhh-cccccEE
Confidence 4432 147999999999875443222111100000000 0000011223467777774 7999998
Q ss_pred EEEeCC---CCcHHHHHHHHHHCC
Q 043334 187 IFNMGG---RPGQGVCKRLFERRG 207 (903)
Q Consensus 187 l~~~~~---~~~~~~l~~ll~~~g 207 (903)
+..+.+ ....+.++..++++.
T Consensus 223 vYsTCSl~~~ENe~vV~~~L~~~~ 246 (293)
T d2b9ea1 223 VYSTCSLCQEENEDVVRDALQQNP 246 (293)
T ss_dssp EEEESCCCGGGTHHHHHHHHTTST
T ss_pred EEeeccCChhHhHHHHHHHHHhCC
Confidence 886654 346667777777653
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=1.9e-05 Score=76.97 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCccCHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhccc
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGNGWITIAIAEKWLP-SKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTL 94 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGtG~lsi~la~~~~~-~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~ 94 (903)
.+.+...+.. ...++.+||||||+.|.++..+.+..+. .+|+|+|+.+- ..+
T Consensus 9 KL~EI~~k~~-l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i--------------- 61 (180)
T d1ej0a_ 9 KLDEIQQSDK-LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI--------------- 61 (180)
T ss_dssp HHHHHHHHHC-CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC---------------
T ss_pred HHHHHHHHhC-ccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc---------------
Confidence 4445444432 2347889999999999999998887654 68999998661 112
Q ss_pred CCcEEEEEcccccccc-------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHH
Q 043334 95 LDRVEFHESDLLAYCR-------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLG 167 (903)
Q Consensus 95 ~~~v~~~~gDl~~~~~-------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~ 167 (903)
+++.++++|+.+... ...+++|+|++..- ++..... ... .....+
T Consensus 62 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a----p~~sg~~-~~d----------------------~~~~~~ 113 (180)
T d1ej0a_ 62 -VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA----PNMSGTP-AVD----------------------IPRAMY 113 (180)
T ss_dssp -TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC----CCCCSCH-HHH----------------------HHHHHH
T ss_pred -CCceEeecccccchhhhhhhhhccCcceeEEEeccc----chhcccc-hhH----------------------HHHHHH
Confidence 478999999866421 11247999998621 1111110 111 112234
Q ss_pred HHHHHHHHHhhcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEEEehh
Q 043334 168 LIARAVEEGIGVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKLWQTK 217 (903)
Q Consensus 168 ~~~~~l~~~~~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~~~~~ 217 (903)
+....+.-+.++|++||.|++.+-.......+...++. -|..++++...
T Consensus 114 L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~-~F~~V~~~KP~ 162 (180)
T d1ej0a_ 114 LVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFTKVKVRKPD 162 (180)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH-HEEEEEEECCT
T ss_pred HHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh-hcCEEEEECCC
Confidence 56688899999999999999977655555555555554 38877775443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=8.2e-07 Score=91.57 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
+++.|||+|||+|.++..|++. +.+|+++|+|+.+++..+++... .++++++.+|+.++.
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~~------------------~~~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPFL------------------GPKLTIYQQDAMTFN 80 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTTT------------------GGGEEEECSCGGGCC
T ss_pred CCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhhh------------------ccchhHHhhhhhhhc
Confidence 5789999999999999999987 67999999999999998764321 148999999998763
Q ss_pred cCC----CCceeEEEECCCCCC
Q 043334 110 RDH----DIQLERIVGCIPQIL 127 (903)
Q Consensus 110 ~~~----~~~fD~Iv~NpPy~~ 127 (903)
... .+.--.|++|+||..
T Consensus 81 ~~~~~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 81 FGELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCTTT
T ss_pred ccccccccCCCeEEEecchHHH
Confidence 321 012237889999984
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=97.93 E-value=5.8e-05 Score=81.85 Aligned_cols=211 Identities=15% Similarity=0.197 Sum_probs=142.1
Q ss_pred HHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc
Q 043334 325 LAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK 404 (903)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (903)
...+.+.+++. .+-|.++.|...+|+.||.|++..|++++++|||+|.|.-.+||.++++.+ ++++++-.+|.
T Consensus 50 ~~a~~~~~~~~-~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l------~~~gd~vl~~~ 122 (382)
T d1b5pa_ 50 KEAARRALAQG-KTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI------LDPGDEVIVLS 122 (382)
T ss_dssp HHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH------CCTTCEEEEEE
T ss_pred HHHHHHHHhcC-CcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh------CCCCCEEEECC
Confidence 34556666654 568999999999999999999999999999999999999999999998865 44455433332
Q ss_pred ----hhhhhhcccCCCCCCCCCCeeEEeeC-Cc---chhHHHHHHHhcCCe---EEEeeccc--chhccHHHHHHHHHHH
Q 043334 405 ----HWLTSLTIKGTDTENSSEHELTVIEA-PR---QSDLMVELIKKLKPQ---VVISGIGD--FEAVTSSAFVHLLDVT 471 (903)
Q Consensus 405 ----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~ 471 (903)
.+...+.. .+..+.-+.. +. ..| +-++.++.+++ ++++.-.+ +-..+....+.|++.+
T Consensus 123 P~y~~~~~~~~~--------~g~~~~~v~~~~~~~~~~d-~~~l~~~~~~~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~ 193 (382)
T d1b5pa_ 123 PYWVSYPEMVRF--------AGGVVVEVETLPEEGFVPD-PERVRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLA 193 (382)
T ss_dssp SCCTHHHHHHHH--------TTCEEEEEECCGGGTTCCC-HHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHH--------hcCeEEEEecccccccCCC-HHHHHHhCCCCCeEEEECCCCCCcchhCCHHHHHHHHHHH
Confidence 23333321 1222111111 10 112 23444444443 34433333 6778888999999999
Q ss_pred hhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccc
Q 043334 472 REVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGT 551 (903)
Q Consensus 472 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 551 (903)
++.|.+|+.|.- |-++.-...... .....|.|..++.+|=|.--.+-|-|.+++. ++.+.+.+.+.......+
T Consensus 194 ~~~~~~ii~De~-y~~~~~~~~~~~-----~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~-~~~~i~~~~~~~~~~~~~ 266 (382)
T d1b5pa_ 194 VEHDFYLVSDEI-YEHLLYEGEHFS-----PGRVAPEHTLTVNGAAKAFAMTGWRIGYACG-PKEVIKAMASVSRQSTTS 266 (382)
T ss_dssp HHTTCEEEEECT-TTTCBSSSCCCC-----GGGTCTTTEEEEEESTTTTTCGGGCCEEEEC-CHHHHHHHHHHHHTTTCS
T ss_pred HHcCeEEEEEcc-ccceecCCCCCC-----HHHcCCCCEEEEecchhhccCcHhheEEEEE-CHHHHHHHHHHHHhcccC
Confidence 999999999973 444442222222 1223567888999999977789999999998 556677777766666677
Q ss_pred hhhhhHh
Q 043334 552 TALISQN 558 (903)
Q Consensus 552 ~~~~~~~ 558 (903)
++.+.|.
T Consensus 267 ~~~~~~~ 273 (382)
T d1b5pa_ 267 PDTIAQW 273 (382)
T ss_dssp CCHHHHH
T ss_pred ccccccc
Confidence 7666663
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=97.90 E-value=3.6e-05 Score=83.87 Aligned_cols=245 Identities=15% Similarity=0.155 Sum_probs=150.3
Q ss_pred HHHHHHHHh-cccccccccccccccccccc-ccccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCC
Q 043334 290 VKKIFKFLK-NGFHEISSSLDLSFEDDSVA-DEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNA 367 (903)
Q Consensus 290 ~~~~~~~l~-~g~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (903)
+.+..+.++ .|-.. .||+..++.-. .+. .+-.+.+.+++ ..+-|.++.|...+|+.||.|+.+.|++++++
T Consensus 18 i~~~a~~~~~~g~~v----i~l~~G~p~~~~p~~--v~~a~~~~~~~-~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~ 90 (388)
T d1j32a_ 18 IDAKAKAMKAEGIDV----CSFSAGEPDFNTPKH--IVEAAKAALEQ-GKTRYGPAAGEPRLREAIAQKLQRDNGLCYGA 90 (388)
T ss_dssp THHHHHHHHTTTCCC----EECCCSSCSSCCCHH--HHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred HHHHHHHHHHCCCCe----EECCCCCCCCCCCHH--HHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHHHHhcccCCCC
Confidence 444455666 67543 34443333211 122 23345566654 45679999999999999999999999999999
Q ss_pred CceEEecchHHHHHHhhhhcccceeeeccccccCCcc----hhhhhhcccCCCCCCCCCCeeEEeeCCc-----chhHHH
Q 043334 368 DNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK----HWLTSLTIKGTDTENSSEHELTVIEAPR-----QSDLMV 438 (903)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 438 (903)
|||+|.|.=.+||.++++.+ ++.+++-.+|. .+...+...+ ...+.+.-.+. -.+.+.
T Consensus 91 ~~i~it~G~~~al~~~~~~~------~~~gd~Vlv~~P~y~~~~~~~~~~~-------~~~v~~~~~~~~~~~~d~~~l~ 157 (388)
T d1j32a_ 91 DNILVTNGGKQSIFNLMLAM------IEPGDEVIIPAPFWVSYPEMVKLAE-------GTPVILPTTVETQFKVSPEQIR 157 (388)
T ss_dssp GGEEEESHHHHHHHHHHHHH------CCTTCEEEEESSCCTHHHHHHHHTT-------CEEEEECCCGGGTTCCCHHHHH
T ss_pred ceEEEcCCHHHHHHHHHHHH------hCCCCEEEEcCCCcHHHHHHHHHhc-------CeEEEEecccccccCCCHHHHH
Confidence 99999999999999998865 44554433332 2222222111 11122221110 122333
Q ss_pred HHHHhcCCeEEEeeccc--chhccHHHHHHHHHHHhhccceEEeecccccccccC-CCchhHhhhhhcCCCCchhHhhhh
Q 043334 439 ELIKKLKPQVVISGIGD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSL-PSSNGVLKYLAGNVLPSHAAVICG 515 (903)
Q Consensus 439 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 515 (903)
+.++.-...|+++.-.+ +-..+....+.|++.+++.|.+|+.|+. |-++.-. +...++....- ....+.+++.|
T Consensus 158 ~~~~~~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~-Y~~~~~~~~~~~s~~~~~~--~~~~~~i~~~S 234 (388)
T d1j32a_ 158 QAITPKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEI-YEKILYDDAQHLSIGAASP--EAYERSVVCSG 234 (388)
T ss_dssp HHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT-TTTCBCTTCCCCCGGGSCH--HHHHTEEEEEE
T ss_pred HhCCCCCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhh-hhcccccCCCCCCHHHhCc--ccccceeEecC
Confidence 33332222355555444 8888899999999999999999999985 3222211 11111111000 01135678899
Q ss_pred hhcccccCCceeeeeccchHHHHHHhhhhhhhhccchhhhhHh
Q 043334 516 LVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGTTALISQN 558 (903)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (903)
|=|.--.+-|-|.+++. ++.+.+.+.+.........++..|.
T Consensus 235 ~SK~~~~~GlRvG~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~ 276 (388)
T d1j32a_ 235 FAKTYAMTGWRVGFLAG-PVPLVKAATKIQGHSTSNVCTFAQY 276 (388)
T ss_dssp STTTTTCTTTCCEEEEC-CHHHHHHHHHHHHTTTCSCCHHHHH
T ss_pred ChhhhhcchhHeEEEEE-CHHHHHHHHHhhhhccccccHHHHH
Confidence 99987779999999887 4566777777666666677776663
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=97.76 E-value=2.1e-05 Score=80.28 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=80.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhC----------------------------------------CCEEEEEeCCHHHHHH
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWL----------------------------------------PSKVYGLDINPRAIRI 69 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~----------------------------------------~~~V~giDis~~al~~ 69 (903)
.+..++|..||||++.+.+|-... ..+++|.|+++++++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 456799999999999998776310 0137899999999999
Q ss_pred H---HHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC----CCCceeEEEECCCCCCCCCccchhhHHhhhh
Q 043334 70 S---WINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD----HDIQLERIVGCIPQILNPNPDAMSKIITENA 142 (903)
Q Consensus 70 A---~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~----~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~ 142 (903)
| ++|+...|+ .+.+++.+.|+++.... .....++||+||||-..-...
T Consensus 130 A~~~r~n~~~Agl---------------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~---------- 184 (249)
T d1o9ga_ 130 ARRLRERLTAEGG---------------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWE---------- 184 (249)
T ss_dssp HHHHHHHHHHTTS---------------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSS----------
T ss_pred HHHHHHHHHHcCC---------------CceeeeeecchhccCcchhccCCCCCCEEEeCCCcccccccc----------
Confidence 8 468877777 36799999998765321 112579999999998422100
Q ss_pred hhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEEEEE
Q 043334 143 SEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIMIFN 189 (903)
Q Consensus 143 ~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~ll~~ 189 (903)
...+.+.+..+...+.+.+.....+++.
T Consensus 185 -------------------~~~~~~~~~~~~~~l~~~~p~~s~~~it 212 (249)
T d1o9ga_ 185 -------------------GQVPGQPVAGLLRSLASALPAHAVIAVT 212 (249)
T ss_dssp -------------------SCCCHHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred -------------------ccchHHHHHHHHHHHHccCCCCcEEEEe
Confidence 1112345668888888888655555543
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.74 E-value=0.00027 Score=78.75 Aligned_cols=268 Identities=10% Similarity=0.049 Sum_probs=140.8
Q ss_pred cCCCCCeEEccCC--CCCCC-CcHHHHHHHHHHHHcc----CC---CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCc
Q 043334 611 ETPNSGLIHMDVD--QSFLP-IPSLVKAAIFESFARQ----NM---SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADC 680 (903)
Q Consensus 611 ~~~~~~~IdLs~g--~p~~~-~p~~v~~al~~al~~y----~~---~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~G 680 (903)
...|...+|+..| ...++ ..+.+.+++.+.+... .. ......+.+.+++.+.+..+...+ .++++++
T Consensus 49 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~---~v~f~~s 125 (461)
T d1ohwa_ 49 DVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMS---QLITMAC 125 (461)
T ss_dssp BTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCC---EEEEESS
T ss_pred ECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcc---eeeeecc
Confidence 3567788998643 33444 4667888877654321 11 122334556666666554443333 7999999
Q ss_pred hHHHHHHHHHHhc----------------------------cCCCeEEEcCCCcHH-HHHHHHHcCC-------------
Q 043334 681 SQSLFNKLVLCCI----------------------------LEGGTLCFPAGSNGN-YVSAARFLKA------------- 718 (903)
Q Consensus 681 s~~al~~ll~~l~----------------------------~pGD~Vlv~~P~y~~-~~~~~~~~G~------------- 718 (903)
++++...++.... .+...|+...-+|-+ +.......|-
T Consensus 126 GseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~ 205 (461)
T d1ohwa_ 126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW 205 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCC
T ss_pred hhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCC
Confidence 9999888776431 122357766666654 3333222221
Q ss_pred EEEEecCCCCC-C-c--------ccCHHHHHHHhhc----CCCcEEEEECCCCCCcc-cCCCHHHHHHHHHHHHhCCcEE
Q 043334 719 NIVNIPTESEV-G-F--------KMTEKTLVTILET----VKKPWVYISGPTINPTG-LLYSNKEIENILTVCAKYGARV 783 (903)
Q Consensus 719 ~vv~v~~~~~~-~-f--------~ld~~~L~~~l~~----~~~~~vil~~P~~NPTG-~v~s~eel~eI~~ia~k~~i~V 783 (903)
...+.+..... . + ..+.+.+++.+.. ....+.++.-|-|.-.| ...+.+-+++|.++|++||+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gill 285 (461)
T d1ohwa_ 206 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF 285 (461)
T ss_dssp CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred cccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcce
Confidence 11111110000 0 0 0113444444321 22235667777644445 5578899999999999999999
Q ss_pred EEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEEEeCcHHHHHHHH-hCCCCCCCc
Q 043334 784 VIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFLVLNHPQLVDAFS-SFPGLSKPH 862 (903)
Q Consensus 784 I~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~lv~~~~~li~~l~-~~~~~~~~s 862 (903)
|.||+..++--.|.. +. ....+-.. ...++ +++|.++ | |+...... +...-. ....+.+.+
T Consensus 286 I~DEV~tG~gRtG~~---~~----~e~~gi~~---~PDiv--~~gK~l~--~---g~~~~~~~-~~~~~~~~~~~T~~g~ 347 (461)
T d1ohwa_ 286 LVDEVQTGGGSTGKF---WA----HEHWGLDD---PADVM--TFSKKMM--T---GGFFHKEE-FRPNAPYRIFNTWLGD 347 (461)
T ss_dssp EEECTTTCSSTTSSS---SG----GGGGCCSS---CCSEE--EECGGGS--S---EEEEECGG-GSCSSTTSSCCSCSSC
T ss_pred ecccccccccccccc---cc----cccccccc---Cchhh--hhhhccc--c---cccccccc-cccccccccccccccc
Confidence 999999766433432 11 11111110 01223 7789875 3 44444432 211100 112256667
Q ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHH
Q 043334 863 STVRYAIKKLLGLRERKARDLMNAVAEHIRNLESRSKRL 901 (903)
Q Consensus 863 ~~~Q~aa~~~L~~~~~~~~~~~~~l~~~r~~y~~Rr~~l 901 (903)
+.+-.++.+.|+.-.. +.+.+++.++-+.+.++.+.+
T Consensus 348 p~~~aaa~a~l~~i~~--~~l~~~~~~~g~~l~~~l~~l 384 (461)
T d1ohwa_ 348 PSKNLLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDL 384 (461)
T ss_dssp HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhcccchhhhh--hhHHHHHHHHHHHHHHHHHHH
Confidence 7777777777742221 234455555555555555443
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=97.73 E-value=8.7e-05 Score=79.52 Aligned_cols=186 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCC---------CCC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCch-HHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNM---------SES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCS-QSL 684 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~---------~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs-~~a 684 (903)
..+|+-| +...|+.|++++.+.+..|.. .++ ..++.+.+++.+++.+|.+.+ . +|++++|+ +.+
T Consensus 4 ~~~F~pG--P~~vp~~V~eam~~~~~~~~~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~-~-~i~~~~gs~t~~ 79 (361)
T d2c0ra1 4 AYNFNAG--PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTG-Y-KVLFIQGGASTQ 79 (361)
T ss_dssp CEECCSS--SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSS-E-EEEEESSHHHHH
T ss_pred CcccCCC--CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC-C-EEEEECCCchHH
Confidence 3455443 335689999999887655321 111 235567788889999998643 2 57776666 455
Q ss_pred HHHHHHHhccCCCeEEEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 685 FNKLVLCCILEGGTLCFPAGSNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 685 l~~ll~~l~~pGD~Vlv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
+..++..+..+|+.+++..-.... +...++..|..+..+..+.... .+++.+++.+...+ .+.++ |.||.
T Consensus 80 ~ea~~~~l~~~~~~~l~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~v~----~~tg~ 151 (361)
T d2c0ra1 80 FAMIPMNFLKEGQTANYVMTGSWASKALKEAKLIGDTHVAASSEASNY--MTLPKLQEIQLQDN--AAYLH----LTSNE 151 (361)
T ss_dssp HHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHHSCEEEEEECGGGTT--CSCCCGGGCCCCTT--EEEEE----EESEE
T ss_pred HHHHHhccccCCCceEEEeechhhhhhhhhhhhcCceeeeeccccccc--cchhhhhhhcccCc--ceEEE----Eeccc
Confidence 677777788889988765543332 5566788999998888765333 55666666655433 44443 77888
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccc
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGAL 836 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~Gl 836 (903)
..+ ..+|.++|+++|+++++|-+-+. .+.+. . +.+ -.+.+.|.+|.++.+|.
T Consensus 152 ~~~---~~~i~~~~~~~~al~~vDavss~---g~~~i---d-------~~~------~di~~~s~~k~~~~~~~ 203 (361)
T d2c0ra1 152 TIE---GAQFKAFPDTGSVPLIGDMSSDI---LSRPF---D-------LNQ------FGLVYAGAQKNLGPSGV 203 (361)
T ss_dssp TTT---TEECSSCCCCTTSCEEEECTTTT---TSSCC---C-------GGG------CSEEEEETTTTTCCSSC
T ss_pred cee---cceEEEeeccCCceEEEEeeccc---ccccc---c-------ccc------ceeEEEecccccccccC
Confidence 887 55677889999999999998742 22221 1 111 23456678999988874
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00019 Score=76.87 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=134.6
Q ss_pred hHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCc
Q 043334 324 FLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLP 403 (903)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (903)
....|.++|++.- +-|.++.| ..||+.||.||.+.|++++++|||+|-+.-.+|+..+++.+. +++++-.+|
T Consensus 17 i~eal~~~~~~~~-~~Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~------~~gd~Vlv~ 88 (361)
T d1d2fa_ 17 IIEALNQRLMHGV-FGYSRWKN-DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS------ETGEGVVIH 88 (361)
T ss_dssp HHHHHHHHHTTCC-CCCCCSCC-HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS------CTTCEEEEE
T ss_pred HHHHHHHHHhCCC-CCCCCCCC-HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc------ccccccccc
Confidence 4456777777654 46877778 569999999999999999999999999999999998888874 444432222
Q ss_pred c----hhhhhhcccCCCCCCCCCCeeEEeeCC----cchhHHHHHHHhcCCeEEEeeccc---chhccHHHHHHHHHHHh
Q 043334 404 K----HWLTSLTIKGTDTENSSEHELTVIEAP----RQSDLMVELIKKLKPQVVISGIGD---FEAVTSSAFVHLLDVTR 472 (903)
Q Consensus 404 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 472 (903)
. .+...+...+ -....+....-. --.+.+.+.+.+-+++++++.--+ +-..+......|++.|+
T Consensus 89 ~P~y~~~~~~~~~~g-----~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~ 163 (361)
T d1d2fa_ 89 TPAYDAFYKAIEGNQ-----RTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEIMADLCE 163 (361)
T ss_dssp ESCCHHHHHHHHHTT-----CEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHHHHHHHH
T ss_pred cccccchhHHHHhhc-----ceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhhhhhhhh
Confidence 1 2223332111 000111111111 025677788877788777654322 66677778899999999
Q ss_pred hccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccch
Q 043334 473 EVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGTT 552 (903)
Q Consensus 473 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 552 (903)
+.|.+|+.|.. |.++.-......-+. ..-+.+.+++.++-|..-.+.+-+.+++...+......-.......+..
T Consensus 164 ~~~~~lI~De~-y~~~~~~~~~~~~~~----~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (361)
T d1d2fa_ 164 RHGVRVISDEI-HMDMVWGEQPHIPWS----NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS 238 (361)
T ss_dssp HTTCEEEEECT-TTTCBCSSSCCCCGG----GTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC
T ss_pred hhheeeeeccc-ccccccccccccccc----cccccccccccccccccccccccceeeecchhHHHHHHhhhcccccccc
Confidence 99999999965 333321111111111 1234567788888888888899999886665555444444444444443
Q ss_pred hh
Q 043334 553 AL 554 (903)
Q Consensus 553 ~~ 554 (903)
++
T Consensus 239 ~~ 240 (361)
T d1d2fa_ 239 SP 240 (361)
T ss_dssp SC
T ss_pred cc
Confidence 33
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=97.65 E-value=0.0002 Score=78.81 Aligned_cols=193 Identities=16% Similarity=0.185 Sum_probs=126.6
Q ss_pred CCCCCCcChhHHHHHHHHhhhcCc--ccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcch----hhhhhcc
Q 043334 339 PYEPPAGSKRFRNLIADFMKKYHH--IPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKH----WLTSLTI 412 (903)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 412 (903)
-|.++.|...+|+-||.|++++++ +++++++|+|.+.-.+||+.+++.+ +++++.-.+|.- +...+..
T Consensus 78 ~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l------~~~Gd~Vlv~~P~y~~~~~~~~~ 151 (428)
T d1iaya_ 78 NFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL------ADPGDAFLVPSPYYPAFNRDLRW 151 (428)
T ss_dssp HCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH------CCTTCEEEEESSCCTTHHHHTTT
T ss_pred cCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHh------CCCCCEEEEccCCchHHHHHHHH
Confidence 388999999999999999999987 6778999999999999999988764 566654433321 1222221
Q ss_pred cCCCCCCCCCCeeEEeeCCc------chhHH---HHHHHhcCCe---EEEeeccc--chhccHHHHHHHHHHHhhccceE
Q 043334 413 KGTDTENSSEHELTVIEAPR------QSDLM---VELIKKLKPQ---VVISGIGD--FEAVTSSAFVHLLDVTREVGSRL 478 (903)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ 478 (903)
..+.++.-+.... ..+.+ .+..++.+++ |+++.-.+ +-..+....+.|++.|++-|.+|
T Consensus 152 -------~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~v 224 (428)
T d1iaya_ 152 -------RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHL 224 (428)
T ss_dssp -------TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEE
T ss_pred -------hcCCeEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEE
Confidence 1122222222110 11222 2334445554 33444333 77788888999999999999999
Q ss_pred Eeecccccccc-cCCCchhHhhhhhc----CCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhh
Q 043334 479 FLDISDHFELS-SLPSSNGVLKYLAG----NVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTV 545 (903)
Q Consensus 479 ~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 545 (903)
+.|..- -++. ..+...++.+.+.. ..-+.+..++.||=|.-..+-+-+.++++-++.+.+.+.+..
T Consensus 225 I~De~Y-~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l~~~~~~~~ 295 (428)
T d1iaya_ 225 VCDEIY-AATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMS 295 (428)
T ss_dssp EEECTT-GGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHH
T ss_pred Eecccc-cccccCcccccccccccchhhccccccceEEEEecCCCcccCCCcccccccccccchhhhhhhhh
Confidence 999863 2222 11223334443321 124456678899999888899999999998888877776543
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=97.50 E-value=0.00048 Score=75.34 Aligned_cols=238 Identities=13% Similarity=0.054 Sum_probs=145.5
Q ss_pred ccccccccccc-ccccchHHHHHHHhhcCC--CCCCCCCCcChhHHHHHHHHhhhcCcccCCC-CceEEecchHHHHHHh
Q 043334 308 LDLSFEDDSVA-DEKIPFLAYLASVLKERS--FFPYEPPAGSKRFRNLIADFMKKYHHIPLNA-DNVVVFPSRAVAIENA 383 (903)
Q Consensus 308 ~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 383 (903)
.||+..++.-. .+. ..-.+.+.+++.. +.-|.++.|...+|+.||.|++++||++++| |+|+|-+.=.+|+..+
T Consensus 29 I~L~~G~Pd~~~p~~--i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~ 106 (418)
T d2r5ea1 29 LNLGQGFPDYHAPKY--ALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYAT 106 (418)
T ss_dssp EECSSSCCSSCCCHH--HHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHH
T ss_pred EEccCCCCCCCCCHH--HHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhh
Confidence 45665544321 222 3555667776543 4569999999999999999999999999996 8999999999999999
Q ss_pred hhhcccceeeeccccccCCcc----hhhhhhcccCCC----CCCCCCCeeEEeeCCcc--hhHHHHHHHhcCCeEEEeec
Q 043334 384 LRLFSPRLAIVDERLTRHLPK----HWLTSLTIKGTD----TENSSEHELTVIEAPRQ--SDLMVELIKKLKPQVVISGI 453 (903)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 453 (903)
++.+. |.++.-..|. .|...+..-+.. ..+..+......+..-+ .+.+.++..+-..-++|+.-
T Consensus 107 ~~~l~------~~gd~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p 180 (418)
T d2r5ea1 107 IQGHV------DEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIIINTP 180 (418)
T ss_dssp HHHHC------CTTCEEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEEESS
T ss_pred hhhcc------ccccceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceecCCc
Confidence 88653 4444333332 111111100000 00000111111111111 22233333222223444444
Q ss_pred cc--chhccHHHHHHHHHHHhhccceEEeecccccccccCCC-chhHhhhhhcCCCCchhHhhhhhhcccccCCceeeee
Q 043334 454 GD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLPS-SNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFL 530 (903)
Q Consensus 454 ~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (903)
.+ +-..+....+.|++.+++.|.+|+.|... -++...+. ...+..+ . ..+.+..++.++-|.--.+-|-|.++
T Consensus 181 ~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y-~~~~~~~~~~~s~~~~-~--~~~~~~i~~~S~SK~~~~pGlRiG~~ 256 (418)
T d2r5ea1 181 HNPLGKVMDRAELEVVANLCKKWNVLCVSDEVY-EHMVFEPFEHIRICTL-P--GMWERTITIGSAGKTFSLTGWKIGWA 256 (418)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTT-TTCBCTTCCCCCGGGS-T--TTGGGEEEEEEHHHHTTCGGGCCEEE
T ss_pred CccccccccHHHHHHHhhhhhcCCeeeecccch-hhhccCCCcccccccc-c--cccceeeeeecCCccccCCCcccccc
Confidence 43 78888999999999999999999888764 22322221 1222222 1 23456678889999988899999999
Q ss_pred ccchHHHHHHhhhhhhhhccchhhhhHh
Q 043334 531 ISEEEAIFKALSKTVEVLEGTTALISQN 558 (903)
Q Consensus 531 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (903)
++- +.+.+++.+....+....++..|.
T Consensus 257 ~~~-~~~i~~~~~~~~~~~~~~~~~~q~ 283 (418)
T d2r5ea1 257 YGP-EALLKNLQMVHQNCVYTCATPIQE 283 (418)
T ss_dssp ESC-HHHHHHHHHHHTTTTCSCCHHHHH
T ss_pred ccc-chhhhhhhhcccccccccccchhh
Confidence 884 566788888777766677766664
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.49 E-value=0.00011 Score=74.09 Aligned_cols=123 Identities=13% Similarity=0.109 Sum_probs=73.0
Q ss_pred CCCCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 27 SILKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 27 ~~~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
.+.++.+|+|||||.|.++..++...+...|.|+|+--+- .- .|+. .+ ....+-+++...+..
T Consensus 63 ~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~----------~e-----~P~~-~~-~~~~ni~~~~~~~dv 125 (257)
T d2p41a1 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPG----------HE-----EPIP-MS-TYGWNLVRLQSGVDV 125 (257)
T ss_dssp SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTT----------SC-----CCCC-CC-STTGGGEEEECSCCT
T ss_pred CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcc----------cc-----CCcc-cc-ccccccccchhhhhH
Confidence 3456779999999999999999887655688898883220 00 0000 00 000112455555433
Q ss_pred ccccCCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHhhcccCCcEE
Q 043334 107 AYCRDHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGIGVIKPSGIM 186 (903)
Q Consensus 107 ~~~~~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~~~LkpgG~l 186 (903)
....+ +..|+|+|..- . .+.+ ..+.+. ...++++.+.++|+|||.|
T Consensus 126 ~~l~~--~~~D~vlcDm~--e-ss~~---~~vd~~--------------------------Rtl~vLela~~wLk~gg~F 171 (257)
T d2p41a1 126 FFIPP--ERCDTLLCDIG--E-SSPN---PTVEAG--------------------------RTLRVLNLVENWLSNNTQF 171 (257)
T ss_dssp TTSCC--CCCSEEEECCC--C-CCSS---HHHHHH--------------------------HHHHHHHHHHHHCCTTCEE
T ss_pred HhcCC--CcCCEEEeeCC--C-CCCC---chhhhh--------------------------hHHHHHHHHHHHcccCCEE
Confidence 33222 37999998631 1 1111 111110 0116788888999999999
Q ss_pred EEEeCCCCcHHHHH
Q 043334 187 IFNMGGRPGQGVCK 200 (903)
Q Consensus 187 l~~~~~~~~~~~l~ 200 (903)
++.+-..+..+.++
T Consensus 172 vvKVl~py~~~v~e 185 (257)
T d2p41a1 172 CVKVLNPYMSSVIE 185 (257)
T ss_dssp EEEESCCCSHHHHH
T ss_pred EEEECCCCChHHHH
Confidence 99888777776653
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=97.48 E-value=0.00021 Score=77.30 Aligned_cols=230 Identities=15% Similarity=0.104 Sum_probs=148.8
Q ss_pred cccccccccccccccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCc-eEEecchHHHHHHhhhh
Q 043334 308 LDLSFEDDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADN-VVVFPSRAVAIENALRL 386 (903)
Q Consensus 308 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 386 (903)
.||+-..|.-..-+ ...-.+++.+++ ..+=|.++.|...+|+-||.|+++.++++.++++ |+|-+--.+|+.++++.
T Consensus 29 i~l~~G~Pd~~~p~-~i~~a~~~~~~~-~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~ 106 (382)
T d1u08a_ 29 INLSQGFPDFDGPR-YLQERLAHHVAQ-GANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITA 106 (382)
T ss_dssp EECCCSSCSSCCCH-HHHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHH
T ss_pred EEccCCCCCCCCCH-HHHHHHHHHHhc-CCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhh
Confidence 45554444322211 134567777765 4567999999999999999999999999998875 99999999999998875
Q ss_pred cccceeeeccccccCCcc----hhhhhhcccCCCCCCCCCCeeEEeeCCcc-----hhHHHHHHHhcCCeEEEe-eccc-
Q 043334 387 FSPRLAIVDERLTRHLPK----HWLTSLTIKGTDTENSSEHELTVIEAPRQ-----SDLMVELIKKLKPQVVIS-GIGD- 455 (903)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~- 455 (903)
+ ++.++.--+|. .+...+. ..+..+.++..+.. .+.+.++++. ++++++. .=.+
T Consensus 107 l------~~~gd~vl~~~p~y~~~~~~~~--------~~g~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~P~NP 171 (382)
T d1u08a_ 107 L------VRNGDEVICFDPSYDSYAPAIA--------LSGGIVKRMALQPPHFRVDWQEFAALLSE-RTRLVILNTPHNP 171 (382)
T ss_dssp H------CCTTCEEEEEESCCTTHHHHHH--------HTTCEEEEEECCTTTCCCCHHHHHHHCCT-TEEEEEEESSCTT
T ss_pred c------ccccceEEEecccccchhhhhh--------hccccceecccccccccCCHHHHhhhhcc-CccEEEECCCCcc
Confidence 4 44444222221 1222222 22233333333322 1222233322 3334443 3333
Q ss_pred -chhccHHHHHHHHHHHhhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccch
Q 043334 456 -FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEE 534 (903)
Q Consensus 456 -~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (903)
+-..+....+.|+..+++.+.+++.|+......-....+.. .++....+.+..+++|+-|+--.+.+-|.+++. +
T Consensus 172 tG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~-~ 247 (382)
T d1u08a_ 172 SATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHAS---VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVA-P 247 (382)
T ss_dssp TCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCC---GGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEEC-C
T ss_pred cccccccccchhhhhhhccccceeeeecchhhcccccccccc---ccccccccCcEEEEeeccccccCCcccchhhhc-c
Confidence 78889999999999999999988877664433221111111 112222445677999999999999999999886 5
Q ss_pred HHHHHHhhhhhhhhccchhhhhHh
Q 043334 535 EAIFKALSKTVEVLEGTTALISQN 558 (903)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~~~~~~ 558 (903)
+.+...+.+..+.....++...|.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~q~ 271 (382)
T d1u08a_ 248 APISAEIRKVHQYLTFSVNTPAQL 271 (382)
T ss_dssp HHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred chhHHHHHhhhccccccccccccc
Confidence 677888888888888888888875
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=97.47 E-value=0.00037 Score=76.66 Aligned_cols=189 Identities=18% Similarity=0.230 Sum_probs=123.3
Q ss_pred CCCCCcChhHHHHHHHHhhhcCc--ccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc-hh---hhhhccc
Q 043334 340 YEPPAGSKRFRNLIADFMKKYHH--IPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK-HW---LTSLTIK 413 (903)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 413 (903)
|.++.|...+|+-||.||.++++ ++++|+||+|.+.-.+||+.+++.+ +|++++-.+|. -| ...+.
T Consensus 80 Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l------~~pGd~Vlv~~P~y~~~~~~~~-- 151 (431)
T d1m7ya_ 80 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL------ADPGEAVLIPTPYYPGFDRDLK-- 151 (431)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH------CCTTCEEEEEESCCTTHHHHTT--
T ss_pred CcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHh------cCCCCEEEEeCCCchhHHHHHH--
Confidence 88999999999999999999976 7889999999999999999888865 56666555543 22 11111
Q ss_pred CCCCCCCCCCeeEEeeCCc----c--hhHHHHHH---HhcC--CeEEE-eeccc--chhccHHHHHHHHHHHhhccceEE
Q 043334 414 GTDTENSSEHELTVIEAPR----Q--SDLMVELI---KKLK--PQVVI-SGIGD--FEAVTSSAFVHLLDVTREVGSRLF 479 (903)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~---~~~~--~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~ 479 (903)
. ..+.++.-+.... + .+.+.+++ ++.+ .++++ +.-.+ +...+....+.|+..+++.|..||
T Consensus 152 ~-----~~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI 226 (431)
T d1m7ya_ 152 W-----RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLI 226 (431)
T ss_dssp T-----TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred H-----hcCceeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCccee
Confidence 1 1122222222110 0 12333333 3333 33333 33222 777888999999999999999999
Q ss_pred eecccc-cccccCCCchhHhhhhhcCC------CCchhHhhhhhhcccccCCceeeeeccchHHHHHHhh
Q 043334 480 LDISDH-FELSSLPSSNGVLKYLAGNV------LPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALS 542 (903)
Q Consensus 480 ~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (903)
.|+.-. +-. ..+...++++...... .+.+..++.||-|.---+-+-+.++++-++.+.+.+.
T Consensus 227 ~De~Y~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~ 295 (431)
T d1m7ya_ 227 SDEIYSGTAF-SSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT 295 (431)
T ss_dssp EECTTGGGCC-SSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH
T ss_pred eccccccccc-CCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH
Confidence 998532 111 2234445555544333 2345668889988876788999999997776655544
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=0.00064 Score=72.96 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=143.8
Q ss_pred cCchhHHHHHHHHh-ccccccccccccccccccc-cccccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCc
Q 043334 285 HQPNQVKKIFKFLK-NGFHEISSSLDLSFEDDSV-ADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHH 362 (903)
Q Consensus 285 ~~~~~~~~~~~~l~-~g~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (903)
..+.++.+.-+.++ .|=.+ .||+..++.- ..+. -+-.+.+.+++. .+-|.++.|...||+.|+.|+.+.++
T Consensus 11 ~~~~~~~~~a~~~~~~G~~v----I~l~~G~p~~~~p~~--i~~~~~~~~~~~-~~~Y~~~~G~~~lR~aia~~~~~~~~ 83 (375)
T d1o4sa_ 11 SKTMELDAKAKALIKKGEDV----INLTAGEPDFPTPEP--VVEEAVRFLQKG-EVKYTDPRGIYELREGIAKRIGERYK 83 (375)
T ss_dssp CSSHHHHHHHHHHHHTTCCC----EECCCSSCSSCCCHH--HHHHHHHHHTTC-CCCCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHCCCCe----EECCCcCCCCCCCHH--HHHHHHHHHhcC-CcCCCCCcCCHHHHHHHHhhhhhccc
Confidence 34556666666666 67332 3455444321 1121 234555556554 46699999999999999999999999
Q ss_pred ccCCCCceEEecchHHHHHHhhhhcc-c--ceeeeccccccCCcchhhhhhcccCCCCCCCCCCeeEEeeCCcc------
Q 043334 363 IPLNADNVVVFPSRAVAIENALRLFS-P--RLAIVDERLTRHLPKHWLTSLTIKGTDTENSSEHELTVIEAPRQ------ 433 (903)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 433 (903)
+++++++|++.+.-.+|+..+++.+. | .+.+.+..-. .+..... ..+....++..+..
T Consensus 84 ~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~vlv~~P~y~-----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 150 (375)
T d1o4sa_ 84 KDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWV-----SYIPQII--------LAGGTVNVVETFMSKNFQPS 150 (375)
T ss_dssp CCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCT-----THHHHHH--------HTTCEEEEEECCGGGTTCCC
T ss_pred cccccccccccCcHHHHHHHHHHHHhCCCCEEEEccCccc-----cchhhhh--------ccccccccccccccccccch
Confidence 99999999999999999988888663 3 1222232221 1222222 12222333222211
Q ss_pred hhHHHHHHHhcCCeEEEeeccc--chhccHHHHHHHHHHHhhccceEEeecccccccccCCCchhHhhhhhcCCCCchhH
Q 043334 434 SDLMVELIKKLKPQVVISGIGD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAA 511 (903)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (903)
.+.+.+....-...++++.=.+ +-..+....+.|++.+++-+.+|+.|. -|-++.....+...+. -...+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De-~y~~~~~~~~~~~~~~---~~~~~~~~i 226 (375)
T d1o4sa_ 151 LEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDE-VYDSLVYTDEFTSILD---VSEGFDRIV 226 (375)
T ss_dssp HHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEC-TTTTSBCSSCCCCHHH---HCSSSTTEE
T ss_pred hHHHHHhhccCccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHh-hhcccccccccccccc---ccCCCCCEE
Confidence 2333333333333455555544 778888899999999999999999996 2333333323333322 234567888
Q ss_pred hhhhhhcccccCCceeeeeccchHH
Q 043334 512 VICGLVKNQVYSDLEVAFLISEEEA 536 (903)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (903)
++.+|=|.--.+-+-+.+++.-++-
T Consensus 227 ~~~S~SK~~~l~G~R~G~~~~~~~~ 251 (375)
T d1o4sa_ 227 YINGFSKSHSMTGWRVGYLISSEKV 251 (375)
T ss_dssp EEEESTTTTTCGGGCCEEEECCHHH
T ss_pred EEeechhhccCCccccccccccccc
Confidence 9999999888899999999877654
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.40 E-value=0.00026 Score=77.29 Aligned_cols=233 Identities=15% Similarity=0.151 Sum_probs=141.1
Q ss_pred hhHHHHHHHHhcccccccccccccccccccc-cccc--chHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcC---
Q 043334 288 NQVKKIFKFLKNGFHEISSSLDLSFEDDSVA-DEKI--PFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYH--- 361 (903)
Q Consensus 288 ~~~~~~~~~l~~g~~~~~~~~d~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 361 (903)
+.++++++.++..-. -+.-.||+..++... ...+ ..+..+.+.+.....+-|.++.|...+|+.||.|+++.+
T Consensus 14 ~pir~~~~~~~~~~~-~~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~ 92 (412)
T d1bw0a_ 14 NPIRTVSDNAKPSPS-PKPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECNGYFPTVGSPEAREAVATWWRNSFVHK 92 (412)
T ss_dssp CHHHHHHHTCCCCCS-CSCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSSSCCCTTCCHHHHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHhcCCCCC-CCCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHHhcCcc
Confidence 455666655551110 011245665544322 2222 245667777888888899999999999999999998764
Q ss_pred ---cccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc-hhhhhhcccCCCCCCCCCCeeEEeeCC------
Q 043334 362 ---HIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK-HWLTSLTIKGTDTENSSEHELTVIEAP------ 431 (903)
Q Consensus 362 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 431 (903)
+.+++++||+|.|.=.+||..+++.+ ++++++-.+|. -|-.-..+=. ..+.++.-+...
T Consensus 93 ~~~~~~~~~~~I~it~G~~~al~~~~~~l------~~~Gd~Vlv~~P~y~~~~~~~~-----~~G~~~~~v~~~~~~~~~ 161 (412)
T d1bw0a_ 93 EELKSTIVKDNVVLCSGGSHGILMAITAI------CDAGDYALVPQPGFPHYETVCK-----AYGIGMHFYNCRPENDWE 161 (412)
T ss_dssp TTTGGGCCGGGEEEESHHHHHHHHHHHHH------CCTTCEEEEEESCCTHHHHHHH-----HTTCEEEEEEEEGGGTTE
T ss_pred cccCCCCCCCeEEEecccccchhhhhhhh------hccccceeeeeccchhhhhhhh-----ccCccccccccccccccc
Confidence 67899999999999999998888754 66666544442 2322111100 122222222111
Q ss_pred cchhHHHHHHHhcCCeEEEeeccc--chhccHHHHHHHHHHHhhccceEEeecccccccccCC-CchhHhhhhhcCCCCc
Q 043334 432 RQSDLMVELIKKLKPQVVISGIGD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLP-SSNGVLKYLAGNVLPS 508 (903)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 508 (903)
...+.+.++++.-...++++.-.+ +-..+....+.|++.+++.+.+|+.|+. |.++.-.. .+.........-....
T Consensus 162 ~~~~~l~~~~~~~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~-Y~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T d1bw0a_ 162 ADLDEIRRLKDDKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEI-YAGMVFKGKDPNATFTSVADFETTV 240 (412)
T ss_dssp ECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECT-TTTCBCCSSCTTCCCCCTTSSCCSC
T ss_pred hhhHHHHhhhhccccccccccccccccccchhhhccccccccccCCeeeechhh-HHHhccCCCCCcccccccccccccc
Confidence 123444444444333445554444 7778889999999999999999999985 23332111 1111111111122334
Q ss_pred hhHhhhhhhcccccCCceeeeeccc
Q 043334 509 HAAVICGLVKNQVYSDLEVAFLISE 533 (903)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (903)
+..++.||-|+--.+-|-|.+++.-
T Consensus 241 ~~~~~~s~SK~~~~~G~RvG~~~~~ 265 (412)
T d1bw0a_ 241 PRVILGGTAKNLVVPGWRLGWLLYV 265 (412)
T ss_dssp CEEEEEESTTTTSCGGGCCEEEEEE
T ss_pred ccccccccCccCccCCCCccccccc
Confidence 5567778999988999999998753
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=97.31 E-value=0.00036 Score=75.74 Aligned_cols=211 Identities=14% Similarity=0.175 Sum_probs=128.7
Q ss_pred HHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc
Q 043334 325 LAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK 404 (903)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (903)
+-.+.+.++++ .+-| |.|...+|+.||.|+++.||+++++|||+|-+.-.+||.++++. +++.++.--++.
T Consensus 50 ~~al~~~~~~~-~~~Y--~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~------~~~pgd~vi~~~ 120 (394)
T d1c7na_ 50 IEGLKKYLDET-VLGY--TGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVRE------FTKPGDGVIIIT 120 (394)
T ss_dssp HHHHHHHHHHC-CCSS--BCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHH------HCCTTCEEEECS
T ss_pred HHHHHHHHhCC-CcCC--CCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhcc------cccccccccccc
Confidence 44566777765 3445 45788999999999999999999999999999999999888875 455555443332
Q ss_pred -hhhhhhcccCCCCCCCCCCeeEEeeCCc-------c--hhHHHHHHHhcCCeEEEeec-cc--chhccHHHHHHHHHHH
Q 043334 405 -HWLTSLTIKGTDTENSSEHELTVIEAPR-------Q--SDLMVELIKKLKPQVVISGI-GD--FEAVTSSAFVHLLDVT 471 (903)
Q Consensus 405 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~ 471 (903)
-|-.....-. ..+.+ .+.-|. + .+.+..+++.-++++++..- -+ +-..+....+.|++.+
T Consensus 121 p~~~~~~~~~~-----~~g~~--~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a 193 (394)
T d1c7na_ 121 PVYYPFFMAIK-----NQERK--IIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIV 193 (394)
T ss_dssp SCCTHHHHHHH-----TTTCE--EEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHH
T ss_pred CcccchhhHHh-----hhhhc--ccccccccccccccchhhhhhhhhccccceEEEecccccccceeccHHHhhhhhccc
Confidence 2222211100 11111 111111 1 22333334333455555443 33 8888999999999999
Q ss_pred hhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccc
Q 043334 472 REVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGT 551 (903)
Q Consensus 472 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 551 (903)
++.|.+|+.|+- |.++.-........... ....+.+.+++.|+=|.--.+-+-+..++.-++.+.+.+.+......+.
T Consensus 194 ~~~~~~ii~De~-Y~~~~~~~~~~~~~~~~-~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~~~~~~~~~~~~~~ 271 (394)
T d1c7na_ 194 LKSDLMLWSDEI-HFDLIMPGYEHTVFQSI-DEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM 271 (394)
T ss_dssp HHSSCEEEEECT-TTTCBCTTCCCCCGGGS-CHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred cccceeEecccc-ccccccCCccccchhhh-hcccccceeecccccccccccccccccccccChhhhhhhhhhhhhcccc
Confidence 999999999983 44543211110000000 0012234456667777766777887777777777777777766555544
Q ss_pred hh
Q 043334 552 TA 553 (903)
Q Consensus 552 ~~ 553 (903)
..
T Consensus 272 ~~ 273 (394)
T d1c7na_ 272 PF 273 (394)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.30 E-value=0.00032 Score=71.16 Aligned_cols=87 Identities=16% Similarity=0.024 Sum_probs=67.6
Q ss_pred CeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 32 KTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 32 ~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
.+|||.-||.|..+..+|.. +.+|+++|.++.+....+.++.....+. ........|++++++|..++...
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~-------~~~~~~~~ri~li~~Ds~~~L~~ 160 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADA-------EIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCT-------TTHHHHHHHEEEEESCHHHHSTT
T ss_pred CEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCc-------hhHHHHhhhheeecCcHHHHHhc
Confidence 48999999999999999987 6899999999998888887776543210 00011234899999999888765
Q ss_pred CCCceeEEEECCCCCC
Q 043334 112 HDIQLERIVGCIPQIL 127 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~ 127 (903)
...+||+|+..|+|-.
T Consensus 161 ~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 161 ITPRPQVVYLDPMFPH 176 (250)
T ss_dssp CSSCCSEEEECCCCCC
T ss_pred cCCCCCEEEECCCCcc
Confidence 5558999999999954
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.00091 Score=72.98 Aligned_cols=203 Identities=11% Similarity=0.163 Sum_probs=132.4
Q ss_pred CCCCCCCCCcChhHHHHHHHHhhhcCccc-CCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc----hhhhhh
Q 043334 336 SFFPYEPPAGSKRFRNLIADFMKKYHHIP-LNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK----HWLTSL 410 (903)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 410 (903)
..+-|.++.|...+|+.||.|+++.++++ ++++||+|-+--.+|+..+++.+. ++++.-.+|. .+....
T Consensus 72 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~~------~~Gd~Vlv~~P~y~~~~~~~ 145 (420)
T d1vp4a_ 72 YTLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFL------DDESYCVLDDPAYLGAINAF 145 (420)
T ss_dssp HHTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHHC------CTTCEEEEEESCCHHHHHHH
T ss_pred cccCCCCCcCCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhhh------ccccccccccccccchhHHH
Confidence 34679999999999999999999999997 799999999999999999888754 3343222222 222222
Q ss_pred cccCCCCCCCCCCeeEEeeC-Cc--chhHHHHHHHh-------cCCe-E-EEeeccc--chhccHHHHHHHHHHHhhccc
Q 043334 411 TIKGTDTENSSEHELTVIEA-PR--QSDLMVELIKK-------LKPQ-V-VISGIGD--FEAVTSSAFVHLLDVTREVGS 476 (903)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-------~~~~-~-~~~~~~~--~~~~~~~~~~~~~~~~~~~g~ 476 (903)
. ..+.++..+.- +. ..+.+.+.+.. .++. + ++..-.+ +-..+....+.|++.|++.|.
T Consensus 146 ~--------~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i 217 (420)
T d1vp4a_ 146 R--------QYLANFVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDL 217 (420)
T ss_dssp H--------TTTCEEEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTC
T ss_pred H--------HHhhhcccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhcccc
Confidence 2 22223322221 11 12222222211 1222 2 2333333 778888999999999999999
Q ss_pred eEEeecccccccccCCCc-hhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccchhhh
Q 043334 477 RLFLDISDHFELSSLPSS-NGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGTTALI 555 (903)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 555 (903)
+||.|. .|-++.-.... .....+- .| .-+++++..|+.--+.+-+.+++. ++.+.+++.+........++..
T Consensus 218 ~ii~De-~y~~l~~~~~~~~~~~~~~----~~-~~~i~~~s~sk~~~~G~RiG~~~~-~~~~i~~l~~~~~~~~~~~~~~ 290 (420)
T d1vp4a_ 218 FIVEDD-PYGALRYEGETVDPIFKIG----GP-ERVVLLNTFSKVLAPGLRIGMVAG-SKEFIRKIVQAKQSADLCSPAI 290 (420)
T ss_dssp EEEEEC-SSTTCBCSSCCCCCHHHHH----CT-TTEEEEEESTTTTCGGGCEEEEEC-CHHHHHHHHHHHHHHHSSCCHH
T ss_pred cccccc-hhhhccccCcccccccccc----cc-cceeEEeccccccccccccccccc-cchhhhhhhhhhhhccccCchh
Confidence 999998 45554422111 1111111 12 234667777777779999999988 7788899998888888888888
Q ss_pred hHhh
Q 043334 556 SQNY 559 (903)
Q Consensus 556 ~~~~ 559 (903)
.|..
T Consensus 291 ~q~~ 294 (420)
T d1vp4a_ 291 THRL 294 (420)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7753
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.19 E-value=0.00087 Score=73.23 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=149.9
Q ss_pred ccccccccccc-ccccchHHHHHHHhhcCC-CCCCCCCCcChhHHHHHHHHhhhcCcccCCC-CceEEecchHHHHHHhh
Q 043334 308 LDLSFEDDSVA-DEKIPFLAYLASVLKERS-FFPYEPPAGSKRFRNLIADFMKKYHHIPLNA-DNVVVFPSRAVAIENAL 384 (903)
Q Consensus 308 ~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 384 (903)
.||+..++... .+ ..+-.++..|++.. ..-|.++.|...+|+.||.|+++.+|+++++ +||+|-|---+|+..++
T Consensus 28 I~l~~G~p~~~~p~--~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~ 105 (418)
T d1w7la_ 28 VNLGQGFPDFPPPD--FAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAF 105 (418)
T ss_dssp EECCCCSCSSCCCH--HHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHH
T ss_pred EECCCCCCCCCCCH--HHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHH
Confidence 45555544322 23 23456777787654 4569999999999999999999999999996 78999999999998888
Q ss_pred hhcccceeeeccccccCCc----chhhhhhcccCCCCCCCCCCeeEEeeCC-------------cchhHHHHHHHhcCCe
Q 043334 385 RLFSPRLAIVDERLTRHLP----KHWLTSLTIKGTDTENSSEHELTVIEAP-------------RQSDLMVELIKKLKPQ 447 (903)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~ 447 (903)
+.+ ++.+++...| ..|...+..-+ ...+++..-| -+.|..-...+..+..
T Consensus 106 ~~l------~~~g~~vlv~~p~~~~y~~~~~~~g-------~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 172 (418)
T d1w7la_ 106 QAL------VDEGDEVIIIEPFFDCYEPMTMMAG-------GRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSRT 172 (418)
T ss_dssp HHH------CCTTCEEEEEESCCTTHHHHHHHTT-------CEEEEEECEECC---CCSEEGGGEECCHHHHHHHCCTTE
T ss_pred Hhh------ccCCceeeccccccchhHHHHHHcC-------CEeeccccccccccccccccccCcccchhhhhccccccc
Confidence 754 3444433322 12222222111 1112222111 1234333333333333
Q ss_pred --EEEeeccc--chhccHHHHHHHHHHHhhccceEEeecccccccccC-CCchhHhhhhhcCCCCchhHhhhhhhccccc
Q 043334 448 --VVISGIGD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSL-PSSNGVLKYLAGNVLPSHAAVICGLVKNQVY 522 (903)
Q Consensus 448 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (903)
+++..-.+ +-..+....+.|++.+++.+.+||.|+. |-++.-. +...++..+ . ..+.|..+++++-|.-..
T Consensus 173 ~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~-Y~~l~~~~~~~~~~~~~-~--~~~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 173 KALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEV-YQWMVYDGHQHISIASL-P--GMWERTLTIGSAGKTFSA 248 (418)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECT-TTTCBCTTCCCCCGGGS-T--TTGGGEEEEEEHHHHTTC
T ss_pred cceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhh-hHHhhcCCCCCCCHHHc-c--ccccccceecccCccccC
Confidence 23333333 7788889999999999999999999976 4444321 122223222 1 245678899999999999
Q ss_pred CCceeeeeccchHHHHHHhhhhhhhhccchhhhhHh
Q 043334 523 SDLEVAFLISEEEAIFKALSKTVEVLEGTTALISQN 558 (903)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (903)
+.+-|.+++.- +.+...+.+....+..+++...|.
T Consensus 249 pG~RvG~~v~~-~~~~~~l~~~~~~~~~~~~~~~q~ 283 (418)
T d1w7la_ 249 TGWKVGWVLGP-DHIMKHLRTVHQNSVFHCPTQSQA 283 (418)
T ss_dssp GGGCCEEEECC-HHHHHHHHHHHHTTTSCCCHHHHH
T ss_pred CCCcccccccc-hhhhhhhccccccccccccchhhH
Confidence 99999999985 467778888777777777777774
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.0004 Score=75.01 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=119.9
Q ss_pred CCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhccc---ceeeeccccccCCcchhhhhhcc
Q 043334 336 SFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSP---RLAIVDERLTRHLPKHWLTSLTI 412 (903)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 412 (903)
..+-|.++.|...+|+.||.|++.+|++.+++|||+|.+.-.+|+..+++.+.. .+.+.+... ..+...+..
T Consensus 56 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l~~~gd~V~i~~P~y-----~~~~~~~~~ 130 (389)
T d2gb3a1 56 EVVYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVIANPGDEILVLEPFY-----ANYNAFAKI 130 (389)
T ss_dssp SSCCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCC-----THHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhcCCCcccceEEecccccccccccccccccCCCeEEEeCCCC-----ccccccccc
Confidence 356799999999999999999999999999999999999999999888876643 333333322 111111111
Q ss_pred cCCCCCCCCCCeeEEeeCCcchhHH-HHHHHhc--CCeEEE-eeccc--chhccHHHHHHHHHHHhhccceEEeeccccc
Q 043334 413 KGTDTENSSEHELTVIEAPRQSDLM-VELIKKL--KPQVVI-SGIGD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHF 486 (903)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 486 (903)
.+ ...+.+.......... ..+..+. +.+.++ +.-.+ +-..+....+.|++.+++.|.+||.|. .|-
T Consensus 131 ~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De-~y~ 202 (389)
T d2gb3a1 131 AG-------VKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDE-VYS 202 (389)
T ss_dssp HT-------CEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC-TTT
T ss_pred cC-------ccccccccccccccchhhhhhhhcccCccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEec-ccc
Confidence 11 0011111100000000 0011111 223333 22222 667788899999999999999999997 455
Q ss_pred ccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhh
Q 043334 487 ELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALS 542 (903)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 542 (903)
++...+.+...+. ..+.+..+++|+-|.-.-+.|-+.+++.-++.+.+.+.
T Consensus 203 ~~~~~~~~~~~~~-----~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~ 253 (389)
T d2gb3a1 203 EIVFRGEFASALS-----IESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAM 253 (389)
T ss_dssp TCBCSSCCCCGGG-----SCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHH
T ss_pred ccccccccccccc-----cccccccccccccccccCcccceeeeeccchhHHHHHh
Confidence 5554444333332 24567778999999999999999998887766554443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.18 E-value=0.00019 Score=72.50 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=47.3
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh----CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW----LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~----~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++++|||+|++.|.-++.++... +..+|+|+|+++........ ..++++++++|.
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---------------------~~~~I~~i~gDs 138 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---------------------DMENITLHQGDC 138 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---------------------GCTTEEEEECCS
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---------------------cccceeeeeccc
Confidence 35799999999998877776543 46799999998754332211 126899999997
Q ss_pred cccccC---CCCceeEEE
Q 043334 106 LAYCRD---HDIQLERIV 120 (903)
Q Consensus 106 ~~~~~~---~~~~fD~Iv 120 (903)
.+.... ....+|.|+
T Consensus 139 ~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 139 SDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp SCSGGGGGGSSSCSSEEE
T ss_pred ccHHHHHHHHhcCCCEEE
Confidence 543221 122577776
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=96.97 E-value=0.0027 Score=68.48 Aligned_cols=214 Identities=15% Similarity=0.153 Sum_probs=131.7
Q ss_pred HHHHHhhcC--CCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc
Q 043334 327 YLASVLKER--SFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK 404 (903)
Q Consensus 327 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (903)
.+.+.+++. ..+-|-++.|...+|+.||.|+.+.++++++++||+|.+.-.+||..+++.+ ++++++...|.
T Consensus 52 ~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l------~~~gd~v~~~~ 125 (403)
T d1wsta1 52 IAVEVLEEHADKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVF------LNPGDPIVVEA 125 (403)
T ss_dssp HHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHH------CCTTCEEEEEE
T ss_pred HHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHH------hhcCCccccCC
Confidence 344444443 2567999999999999999999999999999999999999999999988864 44444333322
Q ss_pred ----hhhhhhcccCCCCCCCCCCeeEEeeCCcchhHHH----HHHHhcCCe-EEE--eeccc--chhccHHHHHHHHHHH
Q 043334 405 ----HWLTSLTIKGTDTENSSEHELTVIEAPRQSDLMV----ELIKKLKPQ-VVI--SGIGD--FEAVTSSAFVHLLDVT 471 (903)
Q Consensus 405 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~ 471 (903)
.+...+..-+ .....+.+.+.....+.+. +..++-++. +++ ....+ +-..+....+.|++.|
T Consensus 126 P~y~~~~~~~~~~g-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a 200 (403)
T d1wsta1 126 PTYLAAIQAFKYYD-----PEFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELA 200 (403)
T ss_dssp SCCHHHHHHHHTTC-----CEEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHH
T ss_pred CcchhhhHHHhhcc-----ccceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccCCHHHHHHHHHHH
Confidence 1222222001 1112222233222222222 233333332 222 22222 7788889999999999
Q ss_pred hhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccc
Q 043334 472 REVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGT 551 (903)
Q Consensus 472 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 551 (903)
++-|.+|+.|.- |.++.-...+..-+..+ .-+.+.+++.+|=|. ..+.+-+.+++. ++.+.+.+.+......+.
T Consensus 201 ~~~~~~li~De~-y~~l~~~~~~~~~~~~~---~~~~~~i~~~S~SK~-~~~G~RiG~~i~-~~~~i~~~~~~~~~~~~~ 274 (403)
T d1wsta1 201 NEYDFLIVEDGP-YSELRYSGEPTPPIKHF---DDYGRVIYLGTFSKI-LAPGFRIGWVAA-HPHLIRKMEIAKQSIDLC 274 (403)
T ss_dssp HHTTCEEEEECT-TTTCBCSSCCCCCGGGG---CSSSCEEEEEESTTT-TCGGGCCEEEEE-CHHHHHHHHHHHHHHHSS
T ss_pred HhcCceeccccc-hhheecCCCCCCccccc---CCCCcEEEEccccce-ecCccccccccc-chHHHHHHHHHHhhhccc
Confidence 999999999975 33432111111111111 123466677788885 469999999998 556666666665555566
Q ss_pred hhhhhH
Q 043334 552 TALISQ 557 (903)
Q Consensus 552 ~~~~~~ 557 (903)
.+++.|
T Consensus 275 ~~~~~~ 280 (403)
T d1wsta1 275 TNTFGQ 280 (403)
T ss_dssp CCHHHH
T ss_pred cccchh
Confidence 666665
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=96.96 E-value=0.00091 Score=72.60 Aligned_cols=215 Identities=12% Similarity=0.026 Sum_probs=134.6
Q ss_pred HHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchH-----HHHHHhhhhcccceeeeccccccCC
Q 043334 328 LASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRA-----VAIENALRLFSPRLAIVDERLTRHL 402 (903)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (903)
+...+.+.....|.|+.|...||+.||.||++.++..+.+++|++.+.-. +|+.++++. ++|++++-.+
T Consensus 55 ~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~------l~~pGd~Vlv 128 (401)
T d7aata_ 55 EAMIAAKKMDKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQR------FFKFSRDVYL 128 (401)
T ss_dssp HHHHHHTTCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH------HCTTCCEEEE
T ss_pred HHHHhhCCCCCCCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHh------hcCCCceEEE
Confidence 33445555556899999999999999999999999999999999887765 466555553 4566665555
Q ss_pred cc----hhhhhhcccCCCCCCCCCCeeEEeeCC------c--chhHHHHHHHhc--CCeEEEeeccc---chhccHHHHH
Q 043334 403 PK----HWLTSLTIKGTDTENSSEHELTVIEAP------R--QSDLMVELIKKL--KPQVVISGIGD---FEAVTSSAFV 465 (903)
Q Consensus 403 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~ 465 (903)
|. .|...+. ..+ .++++-| . ..+.+.+.+.+. +.+++++.--+ +-..|....+
T Consensus 129 ~~P~y~~y~~~~~--------~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~s~e~~~ 198 (401)
T d7aata_ 129 PKPSWGNHTPIFR--------DAG--LQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVDPRQEQWK 198 (401)
T ss_dssp EESCCTTHHHHHH--------HTT--CEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCCCHHHHH
T ss_pred ecCCCcchhhHHH--------HcC--CeEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCCCCCccccCCHHHHH
Confidence 43 2222222 111 1222222 1 123455555543 33455554433 7888899999
Q ss_pred HHHHHHhhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchH------HHHH
Q 043334 466 HLLDVTREVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEE------AIFK 539 (903)
Q Consensus 466 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 539 (903)
.|++.+++.|.+|+.|+- |-+++-.+..........-...-.+.++++|+.|+-..+-+-|.+++.-.. .+..
T Consensus 199 ~l~~~a~~~~~~ii~De~-Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~~~~~~~~~~~~~~~~ 277 (401)
T d7aata_ 199 ELASVVKKRNLLAYFDMA-YQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAFTVICRDAEEAKRVES 277 (401)
T ss_dssp HHHHHHHHTTCEEEEEES-CTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHH
T ss_pred HHHHHHhcceEEEEEecc-chhhhcCCcccchhhhhhhhhhhcccceeEeccccceeeccccceeecchHHHHHHHHHHH
Confidence 999999999999999985 555553332222221111111223456788999999999999998875332 2233
Q ss_pred HhhhhhhhhccchhhhhHhh
Q 043334 540 ALSKTVEVLEGTTALISQNY 559 (903)
Q Consensus 540 ~l~~~~~~~~~~~~~~~~~~ 559 (903)
.+........++.+...|..
T Consensus 278 ~~~~~~~~~~~~~~~~~q~~ 297 (401)
T d7aata_ 278 QLKILIRPMYSNPPMNGARI 297 (401)
T ss_dssp HHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHhhccccccchHHHHH
Confidence 33344455566666666643
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.94 E-value=0.0045 Score=66.31 Aligned_cols=244 Identities=14% Similarity=0.206 Sum_probs=149.0
Q ss_pred CchhHHHHHHHHhcccccccccccccccccccc-ccccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCccc
Q 043334 286 QPNQVKKIFKFLKNGFHEISSSLDLSFEDDSVA-DEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIP 364 (903)
Q Consensus 286 ~~~~~~~~~~~l~~g~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (903)
++.+++++++....+ + .-.||+..++.-. .+. ..-.+.+.|.+ ..+-|.|+.|...+|+.||.|++..++..
T Consensus 10 ~~s~ir~~~~~~~~~-~---dvi~l~~g~p~~~~p~~--v~~~~~~a~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~ 82 (388)
T d1gdea_ 10 SASEIRKLFDIAAGM-K---DVISLGIGEPDFDTPQH--IKEYAKEALDK-GLTHYGPNIGLLELREAIAEKLKKQNGIE 82 (388)
T ss_dssp CCCHHHHHHHHHHHC-T---TCEECCCCSCCSCCCHH--HHHHHHHHHHT-TCCSCCCTTCCHHHHHHHHHHHHHHHCCC
T ss_pred CccHHHHHHHHHhCC-C---CeEECCCCCCCCCCCHH--HHHHHHHHHhc-CccCCCCCcCCHHHHHHHHHHHHhhcccc
Confidence 356677777765321 2 2356665444322 232 23455666655 45679999999999999999998877765
Q ss_pred C-CCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc----hhhhhhcccCCCCCCCCCCeeEEeeCCc------c
Q 043334 365 L-NADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK----HWLTSLTIKGTDTENSSEHELTVIEAPR------Q 433 (903)
Q Consensus 365 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 433 (903)
. .+++|++.+.-.+|+..+++.+ ++.+++-.+|. .+...+..-+ . .|++-|. +
T Consensus 83 ~~~~~~i~~t~G~~~~l~~~~~~l------~~~gd~vlv~~P~y~~~~~~~~~~g--------~--~~~~~~~~~~~~~~ 146 (388)
T d1gdea_ 83 ADPKTEIMVLLGANQAFLMGLSAF------LKDGEEVLIPTPAFVSYAPAVILAG--------G--KPVEVPTYEEDEFR 146 (388)
T ss_dssp CCTTTSEEEESSTTHHHHHHHTTT------CCTTCEEEEEESCCTTHHHHHHHHT--------C--EEEEEECCGGGTTC
T ss_pred CCChheeeeccCcchHHHHHHHHh------cCCCCEEEECCCCcHHHHHHHHHcC--------C--EEEEeecccccCCC
Confidence 4 4567999999999998777654 34444333332 1222222111 1 1222221 1
Q ss_pred --hhHHHHHHHhcCCeEEEeec-cc--chhccHHHHHHHHHHHhhccceEEeecccccccccCCCc-hhHhhhhhcCCCC
Q 043334 434 --SDLMVELIKKLKPQVVISGI-GD--FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLPSS-NGVLKYLAGNVLP 507 (903)
Q Consensus 434 --~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 507 (903)
.+.+.++++. ++++++..- .+ +-..+....+.|++.|++-|.+|+.|+. |-++.....+ ..+..+ ...+
T Consensus 147 ~d~~~l~~~~~~-~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~-y~~~~~~~~~~~~~~~~---~~~~ 221 (388)
T d1gdea_ 147 LNVDELKKYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEV-YEHFIYDDARHYSIASL---DGMF 221 (388)
T ss_dssp CCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECT-TTTCBCTTCCCCCGGGS---TTCG
T ss_pred CCHHHHHHhCcc-CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcC-ChhhhhccCCCCChhhc---cCCC
Confidence 2334444433 344444433 22 7778888999999999999999999986 3334322211 122211 2356
Q ss_pred chhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccchhhhhHh
Q 043334 508 SHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGTTALISQN 558 (903)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 558 (903)
.+..++.+|=|.--.+-+-|.+++.-+ .+...+.+........++...|.
T Consensus 222 ~~~i~~~S~SK~~~~~GlR~G~ii~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
T d1gdea_ 222 ERTITVNGFSKTFAMTGWRLGFVAAPS-WIIERMVKFQMYNATCPVTFIQY 271 (388)
T ss_dssp GGEEEEEESTTTTTCGGGCCEEEECCH-HHHHHHHHHHHTTTCSCCHHHHH
T ss_pred CeEEEEeCChhhccCccccEEEEEeec-cchhhhhhccccccccccccchh
Confidence 788889999998777899999998754 45666666666666666665553
|
| >d1k75a_ c.82.1.2 (A:) L-histidinol dehydrogenase HisD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ALDH-like superfamily: ALDH-like family: L-histidinol dehydrogenase HisD domain: L-histidinol dehydrogenase HisD species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=1.9e-05 Score=85.95 Aligned_cols=124 Identities=16% Similarity=0.229 Sum_probs=97.1
Q ss_pred CCcchhhhhhcccCCCCCCCCCCeeEEeeCCcchhHHHHHHHhcCCeEEEeeccc-chhccHHHHHHHHH----------
Q 043334 401 HLPKHWLTSLTIKGTDTENSSEHELTVIEAPRQSDLMVELIKKLKPQVVISGIGD-FEAVTSSAFVHLLD---------- 469 (903)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------- 469 (903)
.|-+++...++.|. -..| |.+.+.+.+++.. .|++-++++ .|.+|..|.|||..
T Consensus 273 ~l~~~v~~~i~~~l-------------~~l~-r~~i~~~s~~~~~-ii~v~~~~ea~~~~N~~APEHL~l~~~~~~~~~~ 337 (431)
T d1k75a_ 273 DMARRVAEAVERQL-------------AELP-RAETARQALNASR-LIVTKDLAQCVEISNQYGPEHLIIQTRNARELVD 337 (431)
T ss_dssp HHHHHHHHHHHHHH-------------HTCS-SCHHHHHHHTTCE-EEECSSHHHHHHHHHHHCCSEEEEESTTHHHHGG
T ss_pred HHHHHHHHHHHHHh-------------hhch-HHHHHHhhhccce-EEEecCHHHHHHHHHhhhHHHHHHHhcCHHHHHh
Confidence 34556666666665 3456 6678889987765 677778888 99999999999753
Q ss_pred HHhhccceEEeecccccccccCCCchhHhhhhhcCC--CCchhH-------hhhhhhcccccCCceeeeeccchHHHHHH
Q 043334 470 VTREVGSRLFLDISDHFELSSLPSSNGVLKYLAGNV--LPSHAA-------VICGLVKNQVYSDLEVAFLISEEEAIFKA 540 (903)
Q Consensus 470 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (903)
..+++|+ + |++-- +|..+++|++|.+ ||++++ ....|+|...|.. + ++..++.
T Consensus 338 ~i~nAGs-I------flG~~---sp~a~GDY~aGpnHvLPT~G~Ar~~sgLsv~dF~k~~s~~~--~------s~~~~~~ 399 (431)
T d1k75a_ 338 SITSAGS-V------FLGDW---SPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTVQE--L------SKEGFSA 399 (431)
T ss_dssp GCCCCSE-E------EESTT---CCHHHHHHTSSSCCCCCCTTGGGTCCCCCGGGGEEEEEEEE--E------CHHHHHH
T ss_pred hhhhcch-h------hcCCC---CcchhhccccCCCccCCCCCceeecCCCCHHHeeeeeeEEE--E------CHHHHHH
Confidence 3678999 8 66655 8999999999998 999998 7889999999987 5 6667788
Q ss_pred hhhhh------hhhccchhhhhH
Q 043334 541 LSKTV------EVLEGTTALISQ 557 (903)
Q Consensus 541 l~~~~------~~~~~~~~~~~~ 557 (903)
|..++ |.|++|...+..
T Consensus 400 l~~~~~~lA~~Egl~aHa~sv~~ 422 (431)
T d1k75a_ 400 LASTIETLAAAERLTAHKNAVTL 422 (431)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHH
Confidence 87777 788888776654
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=96.86 E-value=0.0005 Score=73.05 Aligned_cols=193 Identities=9% Similarity=0.047 Sum_probs=115.5
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCCC---------CC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNMS---------ES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSL 684 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~~---------~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~a 684 (903)
.+.+|+-|- -+.|++|++++.+.+..|... ++ ..++.+.+++.+++.++.+.+ ..|++++|++++
T Consensus 3 ~~~nF~pGP--~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~--~~i~~~~gt~~~ 78 (360)
T d1w23a_ 3 QVFNFNAGP--SALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPND--YQILFLQGGASL 78 (360)
T ss_dssp CCEECCSSS--CCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT--EEEEEESSHHHH
T ss_pred ceeEeCCCC--cCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC--CEEEEeCCcHHH
Confidence 355666653 245799999998876443211 11 233556778888888888643 268888888766
Q ss_pred HHHHH-HHhccCCCeEEEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 685 FNKLV-LCCILEGGTLCFPAGSNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 685 l~~ll-~~l~~pGD~Vlv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
...+. ..+..+++.+++....+.. +...++..+...+......... .+.+.++...... ..+.++ |-||
T Consensus 79 ~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~----~~tg 150 (360)
T d1w23a_ 79 QFTMLPMNLLTKGTIGNYVLTGSWSEKALKEAKLLGETHIAASTKANSY--QSIPDFSEFQLNE--NDAYLH----ITSN 150 (360)
T ss_dssp HHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTS--CSCCCGGGCCCCT--TEEEEE----EESE
T ss_pred HHHHHHhhhcccCcccceeeccchhhhhHHHHHHhhhcceeeccccccc--cchhhhhhccccc--ccceeE----ecCC
Confidence 66444 4455667888777665444 4445566677666665543222 2223333332221 234333 6678
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
.+.+ +.+|.++|+++|+++|+|-+-+. .+.+. . ++. -.+.+.|++|..+++|. .|++
T Consensus 151 ~~~~---~~~i~~~~~~~g~l~ivDavqs~---g~~~i---d-------~~~------~~vd~~~~~~~k~~~~~-~~~~ 207 (360)
T d1w23a_ 151 NTIY---GTQYQNFPEINHAPLIADMSSDI---LSRPL---K-------VNQ------FGMIYAGAQKNLGPSGV-TVVI 207 (360)
T ss_dssp ETTT---TEECSSCCCCCSSCEEEECTTTT---TSSCC---C-------GGG------CSEEEEETTTTTSCTTC-EEEE
T ss_pred cccc---ceeeeeccccceeeEEeeccccc---ccccc---c-------ccc------ccceEEeeccccccCCc-ceee
Confidence 8887 66788899999999999998742 22221 0 112 23456677887776553 4444
Q ss_pred Ee
Q 043334 842 VL 843 (903)
Q Consensus 842 v~ 843 (903)
+.
T Consensus 208 ~~ 209 (360)
T d1w23a_ 208 VK 209 (360)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00084 Score=70.78 Aligned_cols=193 Identities=10% Similarity=-0.008 Sum_probs=117.1
Q ss_pred eEEccCCCCCCCCcHHHHHHHHHHHHccCC---------CCC--chHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHH
Q 043334 617 LIHMDVDQSFLPIPSLVKAAIFESFARQNM---------SES--EIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLF 685 (903)
Q Consensus 617 ~IdLs~g~p~~~~p~~v~~al~~al~~y~~---------~~G--~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al 685 (903)
+.+|+-| +...|++|++++.+.+..|.. .++ ..++.+.+++.+++.+|.+.+ . .|++++|++.+.
T Consensus 2 ~~nF~pG--P~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~-~-~v~~~~gs~t~~ 77 (360)
T d1bjna_ 2 IFNFSSG--PAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSN-Y-KVLFCHGGGRGQ 77 (360)
T ss_dssp CEECCSS--SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTT-E-EEEEESSHHHHH
T ss_pred eEEeCCC--CcCCCHHHHHHHHHHHhhhcccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCC-C-EEEEECCchHHH
Confidence 4566544 234689999999987755421 111 234567888889998888643 2 688877776554
Q ss_pred -HHHHHHhccCCCeEEEcCCCcHH--HHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCccc
Q 043334 686 -NKLVLCCILEGGTLCFPAGSNGN--YVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGL 762 (903)
Q Consensus 686 -~~ll~~l~~pGD~Vlv~~P~y~~--~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~ 762 (903)
..+...+..+++.+++..-.+.. +...++..|..++.+....+.. .+...+++.+..++ +++.++..+ |-||.
T Consensus 78 ~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~v~v~~~~-~~t~~ 153 (360)
T d1bjna_ 78 FAAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDG--LRAVKPMREWQLSD-NAAYMHYCP-NETID 153 (360)
T ss_dssp HHHHHHHHCTTCCEEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETT--EEEECCGGGCCCCS-SCSCEEECS-EETTT
T ss_pred HhhhhhcccccccccceecccchhhhhHHHHhhcCccceeeccccCCC--cchhhhhhhhccCC-ceeEEEecc-ccccc
Confidence 44445566777888877766655 3444556676666665543222 34444555555555 466677665 88888
Q ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhcccccceeeEE
Q 043334 763 LYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLTGALKFGFL 841 (903)
Q Consensus 763 v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~~GlRiG~l 841 (903)
..+. +.+ .++.+++.++.|-+.+... .+. . . +.-.+.+.|.+|.++.|+-=.+++
T Consensus 154 ~~~~---~~i--~~~~~~~~v~vDa~~~~~~---~~v---------d---~----~~~dv~~~ss~k~~~~~~~~~~~~ 208 (360)
T d1bjna_ 154 GIAI---DET--PDFGADVVVAADFSSTILS---RPI---------D---V----SRYGVIYAGAQKNIGPAGLTIVIV 208 (360)
T ss_dssp TEEC---CCC--CCCCTTCCEEEECTTTTTS---SCC---------C---G----GGCSEEEEETTTTTSSTTCEEEEE
T ss_pred Cccc---cce--ecccccceeeeeeeccccc---eee---------e---e----ccceeEEEEcccccccCCCceeEe
Confidence 8763 233 2466788899998764221 111 0 1 124568888888887665433333
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.80 E-value=0.00099 Score=70.42 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=50.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
.++.+|||+|.|.|.++..+.+.....+|+++|+|+..++..++... .++++++.+|...+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~-------------------~~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------------------GSPLQILKRDPYDW 102 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------------------TSSCEEECSCTTCH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc-------------------CCCcEEEeCchhhc
Confidence 35678999999999999999987655799999999999998876542 14789999998765
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.52 E-value=0.0016 Score=70.42 Aligned_cols=189 Identities=11% Similarity=0.098 Sum_probs=120.7
Q ss_pred HHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhccc---ceeeeccccccC
Q 043334 325 LAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSP---RLAIVDERLTRH 401 (903)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 401 (903)
.-.+.+.+++. ..=|.++.|...+|+-||.|+++.+++++++|||+|.+.=.+++..+++.+.- .+++.+....
T Consensus 52 ~~a~~~a~~~~-~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~~~~Gd~vlv~~P~y~-- 128 (395)
T d1xi9a_ 52 KEAYCKAIKEG-HNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYP-- 128 (395)
T ss_dssp HHHHHHHHHTT-CCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCH--
T ss_pred HHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhhcCCCCEEEEcCCccc--
Confidence 45667777664 44599999999999999999999999999999999999999999888876542 2444444332
Q ss_pred CcchhhhhhcccCCCCCCCCCCeeEEeeCCc-----chhHHHHHHHhcCCeEEEeeccc--chhccHHHHHHHHHHHhhc
Q 043334 402 LPKHWLTSLTIKGTDTENSSEHELTVIEAPR-----QSDLMVELIKKLKPQVVISGIGD--FEAVTSSAFVHLLDVTREV 474 (903)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 474 (903)
.+.......+ ...++|--.+. ..+.+.+.++.-..-|+++.-.+ +...+..-.+.|++.+++.
T Consensus 129 ---~~~~~~~~~g-------~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~ 198 (395)
T d1xi9a_ 129 ---PYTGLVKFYG-------GKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPNNPTGALYDKKTLEEILNIAGEY 198 (395)
T ss_dssp ---HHHHHHHHTT-------CEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHH
T ss_pred ---cchhhhhhcC-------CEEEEEeccccccccchHHHHHHhhcccccEEEecCCCCCccchhhHHHHHHHHhhhhhc
Confidence 1222222111 11122211110 23445555543333445555444 8888999999999999999
Q ss_pred cceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeec
Q 043334 475 GSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLI 531 (903)
Q Consensus 475 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (903)
|.+|+.|.-.. ++.-.+.......... +.+.+++.+|=|.--.+-|-|.+++
T Consensus 199 ~~~ii~De~y~-~~~~~~~~~~~~~~~~----~~~vi~~~S~SK~~~~~GlRvG~~~ 250 (395)
T d1xi9a_ 199 EIPVISDEIYD-LMTYEGEHISPGSLTK----DVPVIVMNGLSKVYFATGWRLGYMY 250 (395)
T ss_dssp TCCEEEECTTT-TCBSSSCCCCHHHHCS----SSCEEEEEESTTTTCCGGGCCEEEE
T ss_pred CeeEEeccccc-cccccccccchhhcCC----CCCEEEEeCcchhcccchhhcEeeE
Confidence 99888887432 2222222222222221 2355677889997777899997754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.013 Score=55.93 Aligned_cols=54 Identities=22% Similarity=0.366 Sum_probs=42.4
Q ss_pred HHHhhcCCCCCCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 18 YEGLNRHPDSILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 18 ~~~L~~~~~~~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+..+.+... ..+|++||-+|||. |.+++.+++..+..+|+++|.+++-++.+++
T Consensus 17 ~~al~~~~~-~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~ 71 (182)
T d1vj0a2 17 YHAFDEYPE-SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE 71 (182)
T ss_dssp HHHHHTCSS-CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence 455554432 45789999999984 7888899988765699999999999998874
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.0098 Score=56.10 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=41.6
Q ss_pred HHHHhhcCCCCCCCCCeEEEeCCc-cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 17 FYEGLNRHPDSILKDKTVAELGCG-NGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 17 ~~~~L~~~~~~~~~~~~VLDlGCG-tG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
-|..+.+. ...++++||-+||| .|.+++.+++.. +.+|+++|.+++-++.|++
T Consensus 16 a~~al~~~--~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~ 69 (168)
T d1piwa2 16 VYSPLVRN--GCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK 69 (168)
T ss_dssp HHHHHHHT--TCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred HHHHHHHh--CcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc
Confidence 34555543 24678999999998 677888888876 6799999999999988875
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.79 E-value=0.0048 Score=60.04 Aligned_cols=46 Identities=24% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
+.+|.+||-+|||. |..+..+++..+..+|+++|.+++-++.|++.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence 46799999999998 67788888888778999999999999998754
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.64 E-value=0.019 Score=53.92 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=36.6
Q ss_pred CCCCeEEEeCCc-cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 29 LKDKTVAELGCG-NGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 29 ~~~~~VLDlGCG-tG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
.++.+||-+||| .|.+++.+++.. +++|+++|.+++-++.|++
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~ 68 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN 68 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH
Confidence 468899999998 577788888776 5799999999999999875
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.57 E-value=0.0042 Score=59.29 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=38.7
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+.++.+||=+|||. |..++.+++..+..+|+++|.+++-++.|++
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence 45788999999997 8889999998766689999999999988874
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=95.56 E-value=0.052 Score=59.00 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=104.2
Q ss_pred ccCCCCCCCCcHHHHHHHH--HHHHccCC-----CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHHHHh
Q 043334 620 MDVDQSFLPIPSLVKAAIF--ESFARQNM-----SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLVLCC 692 (903)
Q Consensus 620 Ls~g~p~~~~p~~v~~al~--~al~~y~~-----~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll~~l 692 (903)
++.|..+...|+.+.+.+. +.+..|.+ ++|.-+..-.+..++++..|.+.. +.-.-.|+++....++.+.
T Consensus 69 ig~G~~~~~~p~~i~~~~~~~~~~t~ytPyqpE~sQG~Lq~l~e~q~~l~eltGmd~~---n~s~~~ga~a~~~~~~~~~ 145 (437)
T d1wyua1 69 LGGGVRSHHVPPVVQALAARGEFLTAYTPYQPEVSQGVLQATFEYQTMIAELAGLEIA---NASMYDGATALAEGVLLAL 145 (437)
T ss_dssp CCSSCCCCCCCHHHHHHHTSHHHHHCCSCCSGGGCHHHHHHHHHHHHHHHHHHTSSEE---CSCBSSHHHHHHHHHHHHH
T ss_pred cCcccCCceeCHHHHHHHhChhhhhhCCCcchHHHHHHHHHHHHHHHHHHHhhCCCcc---ccCchHHHHHHHHHHHHHH
Confidence 4556666566666543322 23445543 456666777889999999999865 5667788888777766554
Q ss_pred c-cCCCeEEEcCCCcHHHHHH----HHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcccCCCHH
Q 043334 693 I-LEGGTLCFPAGSNGNYVSA----ARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTGLLYSNK 767 (903)
Q Consensus 693 ~-~pGD~Vlv~~P~y~~~~~~----~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG~v~s~e 767 (903)
. ...+.++++.-.++.+... ++..|.+++.++.++.. .+.++ +.+++ .++++.+|| -.|..-
T Consensus 146 ~~~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~---~~~~~----~~~~~-Aavmi~~Pn--t~G~~e--- 212 (437)
T d1wyua1 146 RETGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGR---TPLPE----VGEEV-GAVVVQNPN--FLGALE--- 212 (437)
T ss_dssp HHHTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTB---CCCCC----CCTTE-EEEEEESSC--TTSBCC---
T ss_pred hhhcccccccccccChHHhhhhhhhcccceeeEEeeeccccc---chhhh----hccce-eEEEEcccc--cccccc---
Confidence 3 2456899999999876544 56789999999986422 22221 34444 589999995 678773
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 043334 768 EIENILTVCAKYGARVVID 786 (903)
Q Consensus 768 el~eI~~ia~k~~i~VI~D 786 (903)
++++|.+++++.|.+++.|
T Consensus 213 d~~~i~~~~h~~G~l~~~~ 231 (437)
T d1wyua1 213 DLGPFAEAAHGAGALFVAV 231 (437)
T ss_dssp CHHHHHHHHHHTTCEEEEE
T ss_pred chHHHHHHhhhccceEEee
Confidence 5889999999999987765
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.56 E-value=0.047 Score=56.60 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=57.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPS-KVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~-~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
..+.+|+|+.||.|.++..+-+. |. -|.++|+++.+++.-+.|.. . ..++|+.+
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~a--G~~~v~a~e~d~~a~~~~~~N~~---------------------~--~~~~Di~~ 63 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFG---------------------E--KPEGDITQ 63 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHS---------------------C--CCBSCGGG
T ss_pred CCCCeEEEECccccHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHCC---------------------C--CCcCchhc
Confidence 46789999999999999997665 45 56779999999999998871 1 12578877
Q ss_pred cccCCCCceeEEEECCCCCCCC
Q 043334 108 YCRDHDIQLERIVGCIPQILNP 129 (903)
Q Consensus 108 ~~~~~~~~fD~Iv~NpPy~~~~ 129 (903)
.....-..+|++++-||.-..+
T Consensus 64 ~~~~~~~~~Dll~ggpPCq~fS 85 (327)
T d2c7pa1 64 VNEKTIPDHDILCAGFPCQAFS 85 (327)
T ss_dssp SCGGGSCCCSEEEEECCCTTTC
T ss_pred Cchhhcceeeeeecccccchhh
Confidence 6544334799999999976543
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=95.56 E-value=0.015 Score=60.96 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=113.6
Q ss_pred hHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCc
Q 043334 324 FLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLP 403 (903)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (903)
++..+.+.+....+.-| |.+|...+|..||.|+++.+ +++|||+|.+.-.+||.-+++.+. ..++.|......
T Consensus 37 i~~~~~~~~~~~~~~~y-p~~g~~~Lr~aia~~~~~~~---v~~d~I~it~G~~~~l~~l~~~~d-~v~i~~P~y~~~-- 109 (334)
T d2f8ja1 37 LVDEVFRRLNSDALRIY-YDSPDEELIEKILSYLDTDF---LSKNNVSVGNGADEIIYVMMLMFD-RSVFFPPTYSCY-- 109 (334)
T ss_dssp HHHHHHHHCCTTGGGSC-CCSSCHHHHHHHHHHHTCSS---CCGGGEEEEEHHHHHHHHHHHHSS-EEEECSSCCHHH--
T ss_pred HHHHHHHHhhcchhcCC-CCCCcHHHHHHHHHHhcccC---CCcceEEecCcchhHHHHHhhhcc-cccccccccccc--
Confidence 35667777776654444 78899999999999998753 689999999998999999998874 344444433111
Q ss_pred chhhhhhcccCCCCCCCCCCeeEEeeCCcchhHHHHHHHhcCCeEEEe-eccc--chhccHHHHHHHHHHHhhccceEEe
Q 043334 404 KHWLTSLTIKGTDTENSSEHELTVIEAPRQSDLMVELIKKLKPQVVIS-GIGD--FEAVTSSAFVHLLDVTREVGSRLFL 480 (903)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~ 480 (903)
..+.+.+..+ ++.-|-..|........-+.++++. .--+ +...+. ..|...++.|..++.
T Consensus 110 ~~~~~~~g~~-------------~v~v~~~~~~~~~~~~~~~~~~l~l~nP~NPtG~~~s~----~~l~~~~~~~~~ii~ 172 (334)
T d2f8ja1 110 RIFAKAVGAK-------------FLEVPLTKDLRIPEVNVGEGDVVFIPNPNNPTGHVFER----EEIERILKTGAFVAL 172 (334)
T ss_dssp HHHHHHHTCC-------------EEECCCCTTSCCCCCCCCTTEEEEEESSCTTTCCCCCH----HHHHHHHTTTCEEEE
T ss_pred ccchhccCCc-------------cccccccccccccccccccceEEEecccccccceeecH----HHhhccccceeEEee
Confidence 1222222221 1111111111111111224455543 3332 333332 345566788999999
Q ss_pred ecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhh
Q 043334 481 DISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKT 544 (903)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 544 (903)
|...+ +....+.... ...+....++++|=|.-..+-+-+.+++. ++.+...+.+.
T Consensus 173 Dd~~~-~~~~~~~~~~-------~~~~~~~i~~~S~SK~~~~~G~R~G~~~~-~~~~i~~l~~~ 227 (334)
T d2f8ja1 173 DEAYY-EFHGESYVDF-------LKKYENLAVIRTFSKAFSLAAQRVGYVVA-SEKFIDAYNRV 227 (334)
T ss_dssp ECTTG-GGTCCCCGGG-------GGTCSSEEEEEESTTTSSCTTTCEEEEEE-CHHHHHHHHHH
T ss_pred cccch-hhcccccccc-------cccCceEEEEecCccccchhhhhhhhccc-chHHHHHHHHh
Confidence 98643 4433222221 12345667889999988889999999998 66777776654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.028 Score=58.52 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=53.7
Q ss_pred CCeEEEeCCccCHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKWLPSK-VYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYC 109 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~~~~~-V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~ 109 (903)
..+|+|+.||.|.++..+-...-..+ |.++|+++.+++.-+.|. +...++.+|+.+..
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---------------------~~~~~~~~di~~~~ 60 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---------------------PHTQLLAKTIEGIT 60 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---------------------TTSCEECSCGGGCC
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---------------------CCCCcccCchhhCC
Confidence 45899999999999988766521223 679999999999988775 24556778877653
Q ss_pred cCC--CCceeEEEECCCCCCC
Q 043334 110 RDH--DIQLERIVGCIPQILN 128 (903)
Q Consensus 110 ~~~--~~~fD~Iv~NpPy~~~ 128 (903)
... ...+|++++.||.-..
T Consensus 61 ~~~~~~~~~Dll~ggpPCq~f 81 (343)
T d1g55a_ 61 LEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp HHHHHHHCCSEEEECCC----
T ss_pred HhHcCCCCccEEEeecccccc
Confidence 221 1268999999997643
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.43 E-value=0.0087 Score=59.87 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=40.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLY 75 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~ 75 (903)
.+|..|||..||+|..+++..+. +.+.+|+|++++.++.|++++.
T Consensus 211 ~~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 211 NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence 37889999999999999986665 7999999999999999999874
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.023 Score=60.87 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=119.3
Q ss_pred CCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcch----hhhhh
Q 043334 335 RSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPKH----WLTSL 410 (903)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 410 (903)
....-|-|..|...||+.||.|+.+.++.++.+++|++...-..+..+++.+ ..+++++++++-.+|.- |...+
T Consensus 61 ~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~~~~~pgd~Vlv~~P~y~~y~~~~ 138 (397)
T d3tata_ 61 HGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGA--DFLKRYFPESGVWVSDPTWENHVAIF 138 (397)
T ss_dssp CSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHH--HHHHHHCSSCCCEECSSCCTTHHHHH
T ss_pred ccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHH--HHhhhcCCCCcceecccCccccHHHH
Confidence 3456799999999999999999999999999999999988777766555543 33445677776666532 22222
Q ss_pred cccCCCCCCCCCCeeEEeeCCc--------chhHHHHHHHhcCCe--EEEeec-cc--chhccHHHHHHHHHHHhhccce
Q 043334 411 TIKGTDTENSSEHELTVIEAPR--------QSDLMVELIKKLKPQ--VVISGI-GD--FEAVTSSAFVHLLDVTREVGSR 477 (903)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~~ 477 (903)
..-+ .+++.-|- -.+.+.+.+++.+++ +++..- -+ +-..|....+.|++.+++.|..
T Consensus 139 ~~~G----------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ 208 (397)
T d3tata_ 139 AGAG----------FEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELI 208 (397)
T ss_dssp HTTT----------CCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHcC----------CEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCee
Confidence 2111 11222221 123334454444333 333322 22 8888999999999999999999
Q ss_pred EEeecccccccccCCCchh-HhhhhhcCCCCchhHhhhhhhcccccCCceeeeecc
Q 043334 478 LFLDISDHFELSSLPSSNG-VLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLIS 532 (903)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (903)
|+.|+. |-++...+.... ......+ ......++.|+-|+--.+-+-|.+++.
T Consensus 209 ii~De~-Y~~l~~~~~~~~~~~~~~~~--~~~~~i~~~s~SK~~~~~G~RiG~~~~ 261 (397)
T d3tata_ 209 PFLDIA-YQGFGAGMEEDAYAIRAIAS--AGLPALVSNSFSKIFSLYGERVGGLSV 261 (397)
T ss_dssp CEECBS-CTTSSSCHHHHHHHHHHHHT--TTCCCEECBCCHHHHTBTTTCCBCCEE
T ss_pred EEeehh-hhhhccCCcccchhhhhhhh--cCCceEEEecCcccccccCcccccccc
Confidence 999986 555554322222 2333333 233567889999998888888888864
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.33 E-value=0.017 Score=59.69 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=57.2
Q ss_pred eEEEeCCccCHHHHHHHHHhCCCE-EEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccccccC
Q 043334 33 TVAELGCGNGWITIAIAEKWLPSK-VYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCRD 111 (903)
Q Consensus 33 ~VLDlGCGtG~lsi~la~~~~~~~-V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~~ 111 (903)
+|+|+.||.|.++..+-+. |.+ +.++|+++.+++.-+.|. .-.++.+|+.+....
T Consensus 2 k~~~lF~G~Gg~~~gl~~a--G~~~~~a~e~d~~a~~~~~~N~----------------------~~~~~~~Di~~~~~~ 57 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNH----------------------SAKLIKGDISKISSD 57 (324)
T ss_dssp EEEEESCSSCHHHHHHHHH--TCEEEEEEECCHHHHHHHHHHC----------------------CSEEEESCTTTSCGG
T ss_pred eEEEeCcCcCHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHC----------------------CCCCccCChhhCCHh
Confidence 6999999999999887665 454 569999999999888775 134577999887554
Q ss_pred CCCceeEEEECCCCCCCC
Q 043334 112 HDIQLERIVGCIPQILNP 129 (903)
Q Consensus 112 ~~~~fD~Iv~NpPy~~~~ 129 (903)
.-...|++++-||.-..+
T Consensus 58 ~~~~~dll~~g~PCq~fS 75 (324)
T d1dcta_ 58 EFPKCDGIIGGPPCQSWS 75 (324)
T ss_dssp GSCCCSEEEECCCCTTTS
T ss_pred HcccccEEeecccccccc
Confidence 434799999998886543
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=95.06 E-value=0.14 Score=53.31 Aligned_cols=205 Identities=15% Similarity=0.108 Sum_probs=123.1
Q ss_pred ccccccc-cccccccccchHHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhh
Q 043334 307 SLDLSFE-DDSVADEKIPFLAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALR 385 (903)
Q Consensus 307 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (903)
-.||+.. ++-..++++ +..+.+.+.+... | |.+|...+|+.||.|+ + +.++||++...-.+++..+++
T Consensus 24 ~idls~~~np~~~p~~~--~~a~~~~~~~~~~--Y-p~~~~~~Lr~aia~~~----~--v~~~~I~~~~g~~~~~~~~~~ 92 (355)
T d1lc5a_ 24 LLDFSANINPLGMPVSV--KRALIDNLDCIER--Y-PDADYFHLHQALARHH----Q--VPASWILAGNGETESIFTVAS 92 (355)
T ss_dssp SEECSSCCCTTCCCHHH--HHHHHHTGGGGGS--C-CCTTCHHHHHHHHHHH----T--SCGGGEEEESSHHHHHHHHHH
T ss_pred eEEccCCCCCCCCCHHH--HHHHHHHHHHhcc--C-CCCChHHHHHHHHHHh----C--CCHHHEEecccHHHHHHHHHh
Confidence 3577743 222233433 4455555555444 4 4567789999999986 3 568999999999999988888
Q ss_pred hcccceeeeccccccCCcchhhhhhcccCCCCCCCCCCeeEEeeCCcc-----hhHHHHHHHhcCCeEEEe-eccc--ch
Q 043334 386 LFSPRLAIVDERLTRHLPKHWLTSLTIKGTDTENSSEHELTVIEAPRQ-----SDLMVELIKKLKPQVVIS-GIGD--FE 457 (903)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~--~~ 457 (903)
...+.=.+|-.- -+..|......++ .++..+..+.- .+.+.+.+ .-|+++|+. .--+ +.
T Consensus 93 ~~~~~~~~v~~p----~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~v~l~nP~NPtG~ 159 (355)
T d1lc5a_ 93 GLKPRRAMIVTP----GFAEYGRALAQSG--------CEIRRWSLREADGWQLTDAILEAL-TPDLDCLFLCTPNNPTGL 159 (355)
T ss_dssp HHCCSEEEEEES----CCTHHHHHHHHTT--------CEEEEEECCGGGTTCCCTTHHHHC-CTTCCEEEEESSCTTTCC
T ss_pred hhccccccccCC----ccceecccccccc--------ccceeeeeeccCCccceeeeeecc-ccccceeeeecccCcccc
Confidence 877655444321 1112222222111 12222222100 12233333 334555554 3332 77
Q ss_pred hccHHHHHHHHHHHhhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHH
Q 043334 458 AVTSSAFVHLLDVTREVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAI 537 (903)
Q Consensus 458 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (903)
..+......|++.+++.+.+|+.|..- .++...+.+... . ..-+.+.+++.+|=|.--.+.+-+.+++..++.+
T Consensus 160 ~~~~e~l~~i~~~a~~~~~~li~De~y-~~~~~~~~~~~~--~---~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~ 233 (355)
T d1lc5a_ 160 LPERPLLQAIADRCKSLNINLILDEAF-IDFIPHETGFIP--A---LKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAA 233 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTT-GGGSTTCCCSGG--G---CTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHH
T ss_pred cchhhhhhhhhhhccccccccccccce-eeeeeecccccc--c---ccccccceeecccccccccccccccceeccchhh
Confidence 888899999999999999999999764 333322222111 1 2345677899999999888999999988665554
Q ss_pred HHHh
Q 043334 538 FKAL 541 (903)
Q Consensus 538 ~~~l 541 (903)
.+.+
T Consensus 234 ~~~~ 237 (355)
T d1lc5a_ 234 MARM 237 (355)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4443
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=94.93 E-value=0.074 Score=55.88 Aligned_cols=204 Identities=12% Similarity=0.072 Sum_probs=124.9
Q ss_pred HHHHHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc
Q 043334 325 LAYLASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK 404 (903)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (903)
+..|.+.|.+. .-|.+|.|...+|+.||.+++ ++++||++.+.-.+|+..+++.+ ++.+++-..+.
T Consensus 44 ~~al~~~l~~~--~~Y~~~~G~~elr~aiA~~~~------~~~~~Iiit~G~~~al~~~~~~l------~~~~d~v~~~~ 109 (368)
T d1v2da_ 44 LEAVRRALGRQ--DQYAPPAGLPALREALAEEFA------VEPESVVVTSGATEALYVLLQSL------VGPGDEVVVLE 109 (368)
T ss_dssp HHHHHHHTTTS--CSCCCTTCCHHHHHHHHHHHT------SCGGGEEEESSHHHHHHHHHHHH------CCTTCEEEEEE
T ss_pred HHHHHHHhhcc--cCCCCCcCCHHHHHHHHhhcc------cCCcceeeccchHHHHHHHhhcc------ccccccccccC
Confidence 45566666543 458899999999999999864 68999999999999998888765 33343332221
Q ss_pred ----hhhhhhcccCCCCCCCCCCeeEEeeCC-----c--chhHHHHHHHhcCCeEEEeeccc--chhccHHHHHHHHHHH
Q 043334 405 ----HWLTSLTIKGTDTENSSEHELTVIEAP-----R--QSDLMVELIKKLKPQVVISGIGD--FEAVTSSAFVHLLDVT 471 (903)
Q Consensus 405 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 471 (903)
-+...... .+..+..+..+ . -.+.+.+.+++-...|+++.-.+ +...+....+.|++.+
T Consensus 110 p~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a 181 (368)
T d1v2da_ 110 PFFDVYLPDAFL--------AGAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLA 181 (368)
T ss_dssp SCCTTHHHHHHH--------TTCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHH
T ss_pred CcchhhhhHHHh--------cCCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCcccccCCHHHHHHHHHHH
Confidence 11122221 11222111111 0 12344444444444556666554 7888888999999999
Q ss_pred hhccceEEeecccccccccCCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhhhhhccc
Q 043334 472 REVGSRLFLDISDHFELSSLPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTVEVLEGT 551 (903)
Q Consensus 472 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 551 (903)
++-|++++.|..-.+.....+.+..... .+.+..++.++-|+...+-+-+.+++.-+ .+.+.+.+.......+
T Consensus 182 ~~~~i~ii~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~sk~~~~~G~R~g~~~~~~-~~~~~~~~~~~~~~~~ 254 (368)
T d1v2da_ 182 RAHDLFLISDEVYDELYYGERPRRLREF------APERTFTVGSAGKRLEATGYRVGWIVGPK-EFMPRLAGMRQWTSFS 254 (368)
T ss_dssp HHTTCEEEEECTTTTCBSSSCCCCHHHH------CTTTEEEEEEHHHHTTCGGGCCEEEECCT-TTHHHHHHHHHHHTSS
T ss_pred HHcCCeeeechhhhhhcccccccccccc------cccccceeecccccccccccccccccccc-cccchhhhhhhccccc
Confidence 9999999999643222222222222211 22344566677777778888888877654 4455555555555666
Q ss_pred hhhhhH
Q 043334 552 TALISQ 557 (903)
Q Consensus 552 ~~~~~~ 557 (903)
++...|
T Consensus 255 ~~~~~q 260 (368)
T d1v2da_ 255 APTPLQ 260 (368)
T ss_dssp CCHHHH
T ss_pred cccccc
Confidence 666655
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.099 Score=52.51 Aligned_cols=90 Identities=13% Similarity=-0.016 Sum_probs=65.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++++.+|=-|+++| ++.++|+.+ .|++|+.+|.+++.++.+.+.+...+. ..++.++++|+.
T Consensus 8 lk~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~---------------~~~~~~~~~Dls 71 (257)
T d1xg5a_ 8 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY---------------PGTLIPYRCDLS 71 (257)
T ss_dssp GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---------------SSEEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---------------CceEEEEEccCC
Confidence 57899999998877 555555544 478999999999999988877765543 247889999997
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCccch
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNPDAM 134 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~~~l 134 (903)
+... ..-++.|++|.|.......+...+
T Consensus 72 ~~~~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~ 108 (257)
T d1xg5a_ 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSG 108 (257)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecccccCCCccccc
Confidence 6421 112479999999877655444333
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=94.89 E-value=0.0088 Score=61.81 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=40.7
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYLN 77 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~ 77 (903)
+|..|||..||+|..++++.+. +.+.+|+|++++.++.|++++..+
T Consensus 250 ~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 250 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 6889999999999999996665 799999999999999999887443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.79 E-value=0.017 Score=58.39 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=41.1
Q ss_pred CCCeEEEeCCccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh
Q 043334 30 KDKTVAELGCGNGWITIAIAEKWLPSKVYGLDINPRAIRISWINLYL 76 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~~~~~V~giDis~~al~~A~~n~~~ 76 (903)
+|..|||..||+|..+++..+. +.+.+|+|++++.++.|++++..
T Consensus 207 ~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 207 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHH
Confidence 7889999999999999997766 78999999999999999999854
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=94.57 E-value=0.025 Score=56.33 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=57.6
Q ss_pred EEEEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 99 EFHESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 99 ~~~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
++++||.++.... .++++|+|+..|||....... .. +-+...-++.+...++++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~--d~----------------------~~~~~~y~~~~~~~~~e~~ 61 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADW--DS----------------------FDSHNEFLAFTYRWIDKVL 61 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGG--GC----------------------CSSHHHHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcC--cC----------------------CCCHHHHHHHHHHHHHHhh
Confidence 4789999885332 234899999999996432110 00 0001112344668899999
Q ss_pred hcccCCcEEEEEeCCCCcHHHHHHHHHHCCCeEEEE
Q 043334 178 GVIKPSGIMIFNMGGRPGQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 178 ~~LkpgG~ll~~~~~~~~~~~l~~ll~~~gf~~~~~ 213 (903)
++|+|||.+++....... ..+...+.+.||.....
T Consensus 62 rvLk~~g~~~~~~~~~~~-~~~~~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 62 DKLDKDGSLYIFNTPFNC-AFICQYLVSKGMIFQNW 96 (256)
T ss_dssp HHEEEEEEEEEEECHHHH-HHHHHHHHHTTCEEEEE
T ss_pred hccccCcccccccCchhh-hhhhhhhhcccceeeee
Confidence 999999998876554333 23346778889887654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.045 Score=51.37 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 29 LKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 29 ~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
.++.+||=+|||. |..+..+++..+..+|+++|.+++-++.|++
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~ 69 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 69 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence 4688999999985 5567777777766699999999999998874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.37 E-value=0.076 Score=49.79 Aligned_cols=56 Identities=20% Similarity=0.412 Sum_probs=41.2
Q ss_pred HHHhhcCCCCCCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 18 YEGLNRHPDSILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 18 ~~~L~~~~~~~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
|..+.+......++++||=+|||. |..++.+++..+..+|+++|.+++-++.+++.
T Consensus 20 ~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ 76 (172)
T d1h2ba2 20 YRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL 76 (172)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence 444444322234688999999985 45567788888788999999999988888753
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.12 E-value=0.11 Score=48.74 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=37.0
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+.++.+||=+|||. |..++.+++..+..+|+.+|.+++-++.+++
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence 45789999999984 4567778888877789999999999998875
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.065 Score=57.14 Aligned_cols=197 Identities=14% Similarity=0.078 Sum_probs=116.8
Q ss_pred HHHHhhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcccceeeeccccccCCcc-hh
Q 043334 328 LASVLKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFSPRLAIVDERLTRHLPK-HW 406 (903)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 406 (903)
+...+++.....|.|..|...||+.||.|+.+.|+....++++++..+-...- ++.++.--++..+.+++-.+|. .|
T Consensus 53 ~~~~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~l~~~~~gd~Vlvp~P~y 130 (396)
T d2q7wa1 53 EQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTG--ALRVAADFLAKNTSVKRVWVSNPSW 130 (396)
T ss_dssp HHHHHHHCCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH--HHHHHHHHHHHHSCCCEEEEEESCC
T ss_pred HHHHhhCCCCCCCCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHH--HHHHHHHHHhhcccceEEEEecCCC
Confidence 33445666777899999999999999999999999999999876554433321 2222222344556666666652 23
Q ss_pred hhhhcccCCCCCCCCCCeeEEeeC-Cc-----chhHHHHHHHhcCCe--EEEee-ccc--chhccHHHHHHHHHHHhhcc
Q 043334 407 LTSLTIKGTDTENSSEHELTVIEA-PR-----QSDLMVELIKKLKPQ--VVISG-IGD--FEAVTSSAFVHLLDVTREVG 475 (903)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~--~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g 475 (903)
-.-..+-. ..+-++.-+.. +. -.+...+.+++.+++ +++.. =-+ +-..|....+.|++.+++.|
T Consensus 131 ~~y~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~ 205 (396)
T d2q7wa1 131 PNHKSVFN-----SAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKG 205 (396)
T ss_dssp THHHHHHH-----HTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHT
T ss_pred ccchHHHH-----HcCCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCC
Confidence 33222111 12222111111 00 123334444443332 22222 222 88899999999999999999
Q ss_pred ceEEeecccccccccCCCch-hHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccch
Q 043334 476 SRLFLDISDHFELSSLPSSN-GVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEE 534 (903)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (903)
.+|+.|+- |-++....... .....+.+ .....+++.|+-|+-..+-+-|.+++.-+
T Consensus 206 ~~ii~De~-Y~~l~~~~~~~~~~~~~~~~--~~~~~~~~~s~sk~~~~~G~R~G~~~~~~ 262 (396)
T d2q7wa1 206 WLPLFDFA-YQGFARGLEEDAEGLRAFAA--MHKELIVASSYSKNFGLYNERVGACTLVA 262 (396)
T ss_dssp CEEEEEES-CTTSSSCHHHHTHHHHHHHH--HCSCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred eEEEEecc-ccccccCCccCchHhhhhhh--hcccccccccccccccccCCCccccccch
Confidence 99999984 44444322111 12222222 12344677889999988999998887643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.98 E-value=0.18 Score=50.44 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=60.0
Q ss_pred cEEEEEccccccccCC-CCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHH
Q 043334 97 RVEFHESDLLAYCRDH-DIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEE 175 (903)
Q Consensus 97 ~v~~~~gDl~~~~~~~-~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~ 175 (903)
+-.++.||.++..... ++++|+|+..|||...-. +. . ...+-.+.....+++
T Consensus 4 ~~~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~--~~----~---------------------~~~~y~~~~~~~~~e 56 (279)
T d1eg2a_ 4 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLA--DW----D---------------------DHMDYIGWAKRWLAE 56 (279)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGG--GG----G---------------------TCSSHHHHHHHHHHH
T ss_pred cceEEechHHHHHhhCcCCCccEEEECCCCCCCcc--cc----c---------------------CHHHHHHHHHHHHHH
Confidence 4567889988764322 358999999999964211 00 0 011223445688999
Q ss_pred HhhcccCCcEEEEEeCCC--------CcHHHHHHHHHHCCCeEEEEE
Q 043334 176 GIGVIKPSGIMIFNMGGR--------PGQGVCKRLFERRGFRVDKLW 214 (903)
Q Consensus 176 ~~~~LkpgG~ll~~~~~~--------~~~~~l~~ll~~~gf~~~~~~ 214 (903)
+.++|||+|.+++..+.. .....+..++...||......
T Consensus 57 ~~rvLk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 103 (279)
T d1eg2a_ 57 AERVLSPTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKMLLANLI 103 (279)
T ss_dssp HHHHEEEEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHhCCCccEEEecCccccccccccchhhHHHHHHhccCceeeeee
Confidence 999999999999966532 233445567788898876553
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=93.92 E-value=2 Score=46.37 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=122.4
Q ss_pred CeEEccCCCCCCCCcHHHHHHHHHHHHccCC------CCCchHHHHHHHHHHHhhcCCCCCCCCcEEecCchHHHHHHHH
Q 043334 616 GLIHMDVDQSFLPIPSLVKAAIFESFARQNM------SESEIDVTPSIQQYIKSNFGFPIDINAEFIYADCSQSLFNKLV 689 (903)
Q Consensus 616 ~~IdLs~g~p~~~~p~~v~~al~~al~~y~~------~~G~~~lr~ala~~l~~~~G~~~~pe~~I~vt~Gs~~al~~ll 689 (903)
..+-++.+...+ +|.+.+.+...+..|.+ ++|.-+..-.....+.+..|.+.. +.-.-.|++++...++
T Consensus 66 ~~~~lG~~~~hy--~P~v~~~~~~~~TaYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdva---NaS~yDGatA~aeA~~ 140 (471)
T d1wyub1 66 TFYPLGSCTMKY--NPKLHEEAARLFADLHPYQDPRTAQGALRLMWELGEYLKALTGMDAI---TLEPAAGAHGELTGIL 140 (471)
T ss_dssp SCCCBTTTCCCC--CCHHHHHHHHTTSSCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEE---ECCCSSHHHHHHHHHH
T ss_pred cccCCccccCcc--CcchhhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc---ccccchHHHHHHHHHH
Confidence 445555444433 34455555444445443 334434444557778888899876 6667788887665544
Q ss_pred HHhc---cCC-----CeEEEcCCCcHHHHHHHHHcCCEEEEecCCCCCCcccCHHHHHHHhhcCCCcEEEEECCCCCCcc
Q 043334 690 LCCI---LEG-----GTLCFPAGSNGNYVSAARFLKANIVNIPTESEVGFKMTEKTLVTILETVKKPWVYISGPTINPTG 761 (903)
Q Consensus 690 ~~l~---~pG-----D~Vlv~~P~y~~~~~~~~~~G~~vv~v~~~~~~~f~ld~~~L~~~l~~~~~~~vil~~P~~NPTG 761 (903)
.+.. ..| ..+.+...............+..++.++.+. +...+.+.+.....+.. ..+++.+|+ +.|
T Consensus 141 ma~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-a~v~v~~p~--~~g 215 (471)
T d1wyub1 141 IIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGP--EGEVDLEALKRELGPHV-AALMLTNPN--TLG 215 (471)
T ss_dssp HHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCT--TSSBCHHHHHHHCSTTE-EEEEECSSC--TTS
T ss_pred HHHHHhhhcccccccccccCCcccccceeeeeecccceeecccccc--cccccchhhhhhhhccc-cceeeccCC--Ccc
Confidence 4431 222 2344445455666677788889999888764 34578888888876655 589999996 556
Q ss_pred cCCCHHHHHHHHHHHHhCCcEEEEecCCCCCccCCCCCCCCchhhhhhhhccCCCCCCceEEEccCchhccc----ccce
Q 043334 762 LLYSNKEIENILTVCAKYGARVVIDTAFSGLEFNYEGWGGWDLEGCLSKLYSSTNSSFNVSLLGGLSLKMLT----GALK 837 (903)
Q Consensus 762 ~v~s~eel~eI~~ia~k~~i~VI~DeaY~~l~f~~~~~s~~s~~~~~~~l~~~~~~~~~vI~l~S~SK~~g~----~GlR 837 (903)
..-. +.+++.+++++.+..+++|-+-..+...-. +. ++. ...+++.+..+.||. .|--
T Consensus 216 ~~e~--~~~~~~~~~h~~g~~~~~~~~~~~~~~~l~-----~p-------~~~----g~div~vg~~q~~G~P~~~GGP~ 277 (471)
T d1wyub1 216 LFER--RILEISRLCKEAGVQLYYDGANLNAIMGWA-----RP-------GDM----GFDVVHLNLHKTFTVPHGGGGPG 277 (471)
T ss_dssp CCCT--THHHHHHHHHHHTCEEEEEGGGGGGTTTTC-----CH-------HHH----TCSEEECCTTTTTCCCCTTSCCC
T ss_pred cccc--hhhhhHHHHHhccccccccccchhhhhhcc-----cc-------Ccc----ccccccccccccccccccccccc
Confidence 5533 467788888888887777654311111000 00 111 134455555665543 3444
Q ss_pred eeEEEeCcHHHHHHH
Q 043334 838 FGFLVLNHPQLVDAF 852 (903)
Q Consensus 838 iG~lv~~~~~li~~l 852 (903)
+||+.+.++ +++.+
T Consensus 278 ~G~~a~~~~-~~R~~ 291 (471)
T d1wyub1 278 SGPVGVKAH-LAPYL 291 (471)
T ss_dssp CCCEEECGG-GGGGC
T ss_pred ccceeehhh-hhccC
Confidence 788888877 65544
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=93.80 E-value=0.13 Score=55.06 Aligned_cols=183 Identities=14% Similarity=0.054 Sum_probs=112.6
Q ss_pred CCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecc--hHHHHHHhhhhcccceeeeccccccCCcch----hhhhh
Q 043334 337 FFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPS--RAVAIENALRLFSPRLAIVDERLTRHLPKH----WLTSL 410 (903)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 410 (903)
...|.|..|...||+.||.||.+.++....++.+++..+ -..++-.++.+ +++++++++-.+|.- |....
T Consensus 66 ~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~gd~Vlip~P~~~~y~~~~ 141 (412)
T d1yaaa_ 66 NHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKF----FSKFFPDKLVYLSKPTWANHMAIF 141 (412)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHH----HHHHCTTCCEEEEESCCTTHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHH----HhccCCCCEEecccccCchhHHHH
Confidence 457999999999999999999999998888887766543 33343333322 334455554444432 22222
Q ss_pred cccCCCCCCCCCCee-EE---eeCCcc--hhHHHHHHHhcCC--eEEEeec-cc--chhccHHHHHHHHHHHhhccceEE
Q 043334 411 TIKGTDTENSSEHEL-TV---IEAPRQ--SDLMVELIKKLKP--QVVISGI-GD--FEAVTSSAFVHLLDVTREVGSRLF 479 (903)
Q Consensus 411 ~~~~~~~~~~~~~~~-~~---~~~~~~--~~~~~~~~~~~~~--~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~g~~~~ 479 (903)
. ..+.++ +| -+.... .+.+.+.+.+.+. .++++.- -+ +-..|....+.|++.+++.+..|+
T Consensus 142 ~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii 213 (412)
T d1yaaa_ 142 E--------NQGLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIAL 213 (412)
T ss_dssp H--------TTTCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred H--------HcCCceecccccccccccccchhhhcccccCCCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEe
Confidence 2 111111 11 111111 2334455554333 2333333 23 888899999999999999999999
Q ss_pred eecccccccccCC-C--chhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeecc
Q 043334 480 LDISDHFELSSLP-S--SNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLIS 532 (903)
Q Consensus 480 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (903)
.|+- |.++.... . +......+.......+.+++.|+-|+-..+-+-+-+++-
T Consensus 214 ~De~-Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~ 268 (412)
T d1yaaa_ 214 FDTA-YQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCFHL 268 (412)
T ss_dssp EEES-CTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEEEE
T ss_pred ecce-eeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEEEE
Confidence 9985 44554321 1 112222233344566778899999999999999988754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.72 E-value=0.027 Score=53.48 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+.+|++||=+|||. |..++.+++..+..+|+.+|.+++-++.|++
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~ 71 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 71 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence 46789999999998 8899999999877799999999998888775
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=93.32 E-value=0.13 Score=54.87 Aligned_cols=186 Identities=11% Similarity=0.006 Sum_probs=116.4
Q ss_pred CCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEec--chHHHHHHhhhh-cccceeeeccccccCCcch----hhhh
Q 043334 337 FFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFP--SRAVAIENALRL-FSPRLAIVDERLTRHLPKH----WLTS 409 (903)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~~ 409 (903)
...|.|+.|...||+.|+.|+.++++.++.++++++.. +-..+...++.. +.-..++.|++++-.+|.- |...
T Consensus 67 ~~~Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~ 146 (412)
T d1ajsa_ 67 NHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGV 146 (412)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHH
Confidence 34699999999999999999999999999999866543 333444333332 2233456788876666642 2233
Q ss_pred hcccCCCCCCCCCCeeEEe---e-CCcch--hHHHHHHHhc--CCeEEEeeccc---chhccHHHHHHHHHHHhhccceE
Q 043334 410 LTIKGTDTENSSEHELTVI---E-APRQS--DLMVELIKKL--KPQVVISGIGD---FEAVTSSAFVHLLDVTREVGSRL 478 (903)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~---~-~~~~~--~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~ 478 (903)
+..-+ ...+.+. + ..+.. +-+.+.+++. +.++++..--+ +-..|....+.|++.+++.|..|
T Consensus 147 ~~~~G-------~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~i 219 (412)
T d1ajsa_ 147 FTTAG-------FKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFP 219 (412)
T ss_dssp HHHTT-------CSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred HHHcC-------CeEEEeecccccccccccHHHHHHHHHhccCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEE
Confidence 33111 1112221 1 12223 3356666654 33455543322 88889999999999999999999
Q ss_pred EeecccccccccCCCch---hHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccc
Q 043334 479 FLDISDHFELSSLPSSN---GVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISE 533 (903)
Q Consensus 479 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (903)
+.|+- |-++....... ....+. ......++++|+-|+.-.+-+-+.+++.-
T Consensus 220 i~De~-Y~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~s~sk~~~~~G~R~G~~~~~ 273 (412)
T d1ajsa_ 220 FFDSA-YQGFASGNLEKDAWAIRYFV---SEGFELFCAQSFSKNFGLYNERVGNLTVV 273 (412)
T ss_dssp EEEES-CTTTTTSCHHHHTHHHHHHH---HTTCCEEEEEECTTTSCCGGGCEEEEEEE
T ss_pred EecHh-hhhhhcCCcccchhhhhhhh---hhcccccccccccccccCCCCCccccccc
Confidence 99975 44454322111 112221 12234567889999999999888877654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.17 E-value=0.18 Score=46.82 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=40.9
Q ss_pred HHHhhcCCCCCCCCCeEEEeCC--ccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 18 YEGLNRHPDSILKDKTVAELGC--GNGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 18 ~~~L~~~~~~~~~~~~VLDlGC--GtG~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
|..+.+.. +.++++||=+|| |.|.+++.+++..+..+|+++|.+++-++.+++.
T Consensus 17 ~~al~~~~--~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~ 72 (170)
T d1jvba2 17 YRAVRKAS--LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA 72 (170)
T ss_dssp HHHHHHTT--CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhC--CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence 44455432 457889999997 3566777788877778999999999988888753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.77 E-value=0.2 Score=46.52 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=39.6
Q ss_pred HHHHhhcCCCCCCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 17 FYEGLNRHPDSILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 17 ~~~~L~~~~~~~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
-|..+.+. .+.+|++||=+|||. |.+++.+++.. +.+++++|.+++-.+.+++
T Consensus 19 ay~al~~~--~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 19 TYSPLRHW--QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp HHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH
T ss_pred HHHHHHHh--CCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc
Confidence 35555543 245789999999974 77788888876 6788899999988877764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.68 E-value=0.37 Score=47.88 Aligned_cols=86 Identities=13% Similarity=-0.020 Sum_probs=63.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++++.+|=-|.+.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++.+++.|+.
T Consensus 8 lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-----------------~~~~~~~~Dvt 69 (251)
T d2c07a1 8 GENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-----------------YESSGYAGDVS 69 (251)
T ss_dssp CSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-----------------CCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEccCC
Confidence 57889999996655 777777665 36799999999999998888776554 36889999997
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCcc
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNPD 132 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~~ 132 (903)
+... ..-++.|++|.|..........
T Consensus 70 ~~~~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~ 104 (251)
T d2c07a1 70 KKEEISEVINKILTEHKNVDILVNNAGITRDNLFL 104 (251)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTT
T ss_pred CHHHHHHHHHHHHHhcCCceeeeeccccccccccc
Confidence 6421 1124899999998776554433
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=92.34 E-value=0.16 Score=53.78 Aligned_cols=211 Identities=11% Similarity=0.096 Sum_probs=120.3
Q ss_pred hhcCCCCCCCCCCcChhHHHHHHHHhhhcCcccCCCCceEEecc-hHHHHHHhhhhcccceeeeccccccCCcc-hhh--
Q 043334 332 LKERSFFPYEPPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPS-RAVAIENALRLFSPRLAIVDERLTRHLPK-HWL-- 407 (903)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 407 (903)
+.+.....|.|..|...||+.||.+|.+.+.....++++++-.. -+.++-..+ ++..+.+++-.+|. -|-
T Consensus 57 ~~~~~~~~Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~gd~V~~p~p~~~~y 130 (394)
T d2ay1a_ 57 LETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALEL------ARMANPDLRVFVSDPTWPNH 130 (394)
T ss_dssp HHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHH------HHHHCTTCCEEEEESCCHHH
T ss_pred hhCCCCCCCCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHHHHHH------hhhcCCceEEEEecccccch
Confidence 34445568999999999999999999998888777777666554 344452222 33456666666664 232
Q ss_pred -hhhcccCCCCCCCCCCeeEE--ee-CCc--chhHHHHHHHhcCC-eEEEe--eccc--chhccHHHHHHHHHHHhhccc
Q 043334 408 -TSLTIKGTDTENSSEHELTV--IE-APR--QSDLMVELIKKLKP-QVVIS--GIGD--FEAVTSSAFVHLLDVTREVGS 476 (903)
Q Consensus 408 -~~~~~~~~~~~~~~~~~~~~--~~-~~~--~~~~~~~~~~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~g~ 476 (903)
.....-+ ...+.+ .. ... ..+.+.+++++.++ .++++ +--+ +-..|..-.+.|++.+++.|.
T Consensus 131 ~~~~~~~g-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~ 203 (394)
T d2ay1a_ 131 VSIMNFMG-------LPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGA 203 (394)
T ss_dssp HHHHHHHT-------CCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcC-------CEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceE
Confidence 2222112 011111 11 110 12334455554433 33332 2333 888899999999999999999
Q ss_pred eEEeecccccccccCCCch-hHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccch------HHHHHHhhhhhhhhc
Q 043334 477 RLFLDISDHFELSSLPSSN-GVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEE------EAIFKALSKTVEVLE 549 (903)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 549 (903)
+|+.|+- |-++...+... ........ ......+++++-|+...+-+-+..++--. ..+...+......+.
T Consensus 204 ~ii~De~-Y~~l~~~~~~~~~~~~~~~~--~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (394)
T d2ay1a_ 204 LPLIDLA-YQGFGDGLEEDAAGTRLIAS--RIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTY 280 (394)
T ss_dssp EEEEEEC-CTTSSSCHHHHHHHHHHHHH--HCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEecc-chhhcccccccchhhhhhhh--hcccccccccccccccCCcccccchhhchhHHHHHHHhhhhhHhhhcccc
Confidence 9999986 55565332222 22222211 12234578899999888888877664322 222222333334445
Q ss_pred cchhhhhHh
Q 043334 550 GTTALISQN 558 (903)
Q Consensus 550 ~~~~~~~~~ 558 (903)
++.+.+.|.
T Consensus 281 ~~~~~~~~~ 289 (394)
T d2ay1a_ 281 SFPPFHGAK 289 (394)
T ss_dssp SSCCCHHHH
T ss_pred cchhHHHHH
Confidence 555555553
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.63 E-value=0.88 Score=45.19 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=61.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++.++.+|+.
T Consensus 6 L~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----------------~~~~~~~~Dv~ 67 (259)
T d2ae2a_ 6 LEGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-----------------FKVEASVCDLS 67 (259)
T ss_dssp CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CEEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CCceEEEeeCC
Confidence 57899999997766 454444443 37899999999999988877776554 36888999986
Q ss_pred cccc----------CCCCceeEEEECCCCCCCCCc
Q 043334 107 AYCR----------DHDIQLERIVGCIPQILNPNP 131 (903)
Q Consensus 107 ~~~~----------~~~~~fD~Iv~NpPy~~~~~~ 131 (903)
+... ...++.|++|.|.......+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~ 102 (259)
T d2ae2a_ 68 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEA 102 (259)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCG
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEECCceeccCcc
Confidence 5421 112379999999877654443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.58 E-value=0.35 Score=48.63 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=60.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+.. ..++.++++|+.
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~~~~Dvs 67 (272)
T d1xkqa_ 3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS--------------EKQVNSVVADVT 67 (272)
T ss_dssp TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC--------------GGGEEEEECCTT
T ss_pred CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--------------CCceEEEEccCC
Confidence 57899999997766 554444443 3789999999999999988887665431 246899999987
Q ss_pred cccc---------CCCCceeEEEECCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQIL 127 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~ 127 (903)
+... ...++.|++|.|-....
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~~~ 97 (272)
T d1xkqa_ 68 TEDGQDQIINSTLKQFGKIDVLVNNAGAAI 97 (272)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeCCcccC
Confidence 6421 11247999999965543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.15 Score=47.57 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=35.7
Q ss_pred CCCCCeEEEeCC--ccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELGC--GNGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlGC--GtG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+.++++||-.|+ |.|..++.+|+.. +++|++++-+++..+.+++
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~ 71 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ 71 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEEecccccccccccccccc-Ccccccccccccccccccc
Confidence 457899999997 4677888888876 6799999999988777764
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=91.41 E-value=0.53 Score=46.89 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=58.1
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+.+|=-|.++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++..+.+|+.
T Consensus 3 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-----------------~~~~~~~~Dv~ 64 (260)
T d1zema1 3 FNGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-----------------VEARSYVCDVT 64 (260)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----------------SCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEccCC
Confidence 57899999997766 444444433 37899999999999998887776554 36889999987
Q ss_pred cccc---------CCCCceeEEEECCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQI 126 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~ 126 (903)
+... ..-++.|++|.|....
T Consensus 65 ~~~~v~~~~~~~~~~~g~iDilVnnaG~~ 93 (260)
T d1zema1 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQ 93 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCeehhhhccc
Confidence 6421 1124799999996654
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.96 E-value=0.51 Score=47.40 Aligned_cols=83 Identities=13% Similarity=0.081 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+.+ ..++..+.+|+.
T Consensus 2 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~--------------~~~~~~~~~Dv~ 66 (274)
T d1xhla_ 2 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP--------------AEKINAVVADVT 66 (274)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEEEECCTT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC--------------CcceEEEEeeCC
Confidence 46899999998777 444444433 3789999999999999888888766542 247899999987
Q ss_pred cccc---------CCCCceeEEEECCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQI 126 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~ 126 (903)
+... ..-++.|++|+|....
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~ 95 (274)
T d1xhla_ 67 EASGQDDIINTTLAKFGKIDILVNNAGAN 95 (274)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCceEEEeecccc
Confidence 6521 1114789999996543
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.78 E-value=0.76 Score=45.90 Aligned_cols=125 Identities=13% Similarity=0.013 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCC-HHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDIN-PRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis-~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++|+++|=-|++.| ++.++++.+ .+++|+.+|.+ ++.++.+.+.+...+. ++.++++|+
T Consensus 16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~~~D~ 77 (272)
T d1g0oa_ 16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS-----------------DAACVKANV 77 (272)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-----------------CEEEEECCT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC-----------------ceeeEeCCC
Confidence 57899999998777 444444332 37899999987 5666666666655543 688999998
Q ss_pred ccccc---------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHH
Q 043334 106 LAYCR---------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEG 176 (903)
Q Consensus 106 ~~~~~---------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~ 176 (903)
.+... ...++.|++|.|..............+..... + +-.+.-...+.+.+
T Consensus 78 ~~~~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~---~----------------~~nl~~~~~~~~~~ 138 (272)
T d1g0oa_ 78 GVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRV---F----------------TINTRGQFFVAREA 138 (272)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHH---H----------------HHHTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHH---h----------------hhccceeeeecccc
Confidence 76421 11247899999987765554433322111100 0 00111133567788
Q ss_pred hhcccCCcEEEEEe
Q 043334 177 IGVIKPSGIMIFNM 190 (903)
Q Consensus 177 ~~~LkpgG~ll~~~ 190 (903)
.+.|+.+|..++..
T Consensus 139 ~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 139 YKHLEIGGRLILMG 152 (272)
T ss_dssp HHHSCTTCEEEEEC
T ss_pred cccccccccccccc
Confidence 88888888777743
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.58 Score=46.47 Aligned_cols=82 Identities=18% Similarity=0.059 Sum_probs=60.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|.+.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++.++++|+.
T Consensus 9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-----------------~~~~~~~~Dvs 70 (255)
T d1fmca_ 9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-----------------GQAFACRCDIT 70 (255)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-----------------CcEEEEEccCC
Confidence 57899999886655 666666554 47899999999999988887776554 36888999987
Q ss_pred cccc---------CCCCceeEEEECCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILN 128 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~ 128 (903)
+... ..-++.|++|+|......
T Consensus 71 ~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~ 101 (255)
T d1fmca_ 71 SEQELSALADFAISKLGKVDILVNNAGGGGP 101 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEeeeCCcCCCC
Confidence 6521 111479999999776543
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.47 E-value=0.11 Score=48.17 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 29 LKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 29 ~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
.++++||=+|||. |..++.+++.. +.+|+++|.+++-++.+++
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc
Confidence 4688999999984 66777778776 5899999999999988864
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.16 E-value=0.22 Score=50.64 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=58.7
Q ss_pred CcEEEEEccccccccC-CCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHH
Q 043334 96 DRVEFHESDLLAYCRD-HDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVE 174 (903)
Q Consensus 96 ~~v~~~~gDl~~~~~~-~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~ 174 (903)
++-.+++||.++.... .++++|+|+..|||....+...-... ..+-++.+...+.
T Consensus 11 ~~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~------------------------~~~y~~~~~~~l~ 66 (320)
T d1booa_ 11 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLE------------------------QHEYVDWFLSFAK 66 (320)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCH------------------------HHHHHHHHHHHHH
T ss_pred CCCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCC------------------------HHHHHHHHHHHHH
Confidence 3568999998875332 23589999999999754222110000 0111334568899
Q ss_pred HHhhcccCCcEEEEEeCCCC----------cHHHHHHHHHHCCCeEEEE
Q 043334 175 EGIGVIKPSGIMIFNMGGRP----------GQGVCKRLFERRGFRVDKL 213 (903)
Q Consensus 175 ~~~~~LkpgG~ll~~~~~~~----------~~~~l~~ll~~~gf~~~~~ 213 (903)
+++++|+|+|.+++.+.... ....+...+...|+.....
T Consensus 67 ~~~rvLk~~G~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T d1booa_ 67 VVNKKLKPDGSFVVDFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAED 115 (320)
T ss_dssp HHHHHEEEEEEEEEEECCCEETTEEEECCHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCcccCcccccccchhhcccccccchhHHHHHHHHHhcCceEeee
Confidence 99999999999999765432 2223344566677655443
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.05 E-value=0.99 Score=44.57 Aligned_cols=85 Identities=14% Similarity=0.040 Sum_probs=58.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++++++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+.... ..++.++.+|+.
T Consensus 3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~----------------g~~~~~~~~Dv~ 65 (251)
T d1vl8a_ 3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY----------------GVETMAFRCDVS 65 (251)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH----------------CCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh----------------CCcEEEEEccCC
Confidence 57899999997776 444444433 37899999999988877665553221 136888999987
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
+... ..-++.|++|+|-......+
T Consensus 66 ~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~ 98 (251)
T d1vl8a_ 66 NYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHP 98 (251)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC
Confidence 6421 11147999999977654443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.90 E-value=0.89 Score=44.71 Aligned_cols=81 Identities=16% Similarity=0.019 Sum_probs=56.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|.+.| ++.++|+.+ .+++|+.+|.+++.++...+.+. .+...++.|+.
T Consensus 2 l~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--------------------~~~~~~~~Dv~ 60 (243)
T d1q7ba_ 2 FEGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG--------------------ANGKGLMLNVT 60 (243)
T ss_dssp CTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--------------------GGEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--------------------CCCcEEEEEec
Confidence 57899999997766 455555443 37899999999998887765541 25778888986
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
+... ..-++.|++|+|........
T Consensus 61 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~ 93 (243)
T d1q7ba_ 61 DPASIESVLEKIRAEFGEVDILVNNAGITRDNL 93 (243)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCCCCCC
T ss_pred CHHHhhhhhhhhhcccCCcceehhhhhhccccc
Confidence 6421 11247999999976655444
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=2.1 Score=41.94 Aligned_cols=85 Identities=15% Similarity=0.053 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCccCH---HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 29 LKDKTVAELGCGNGW---ITIAIAEKWLPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~---lsi~la~~~~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
..|+.+|=-|++.|. ++..+++. |++|+.+|.+++.++...+.+...+ .++..+.+|+
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~~~~~~-----------------~~~~~~~~Dv 65 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAKCKGLG-----------------AKVHTFVVDC 65 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEeeC
Confidence 678999999988884 34444444 7899999999999988888776544 3788999999
Q ss_pred ccccc---------CCCCceeEEEECCCCCCCCCcc
Q 043334 106 LAYCR---------DHDIQLERIVGCIPQILNPNPD 132 (903)
Q Consensus 106 ~~~~~---------~~~~~fD~Iv~NpPy~~~~~~~ 132 (903)
.+... ...+..|++|+|-.........
T Consensus 66 s~~~~v~~~~~~i~~~~g~idilinnag~~~~~~~~ 101 (244)
T d1yb1a_ 66 SNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLF 101 (244)
T ss_dssp TCHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCG
T ss_pred CCHHHHHHHHHHHHHHcCCCceeEeecccccccccc
Confidence 77521 1224799999997776554443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.49 E-value=0.8 Score=45.38 Aligned_cols=85 Identities=15% Similarity=-0.022 Sum_probs=59.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEE-eCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW--LPSKVYGL-DINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~gi-Dis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
.+.|+++|=-|.+ |.++.++|+.+ .+++|+.. +.+++.++.+.+.+...|. ++..+++|
T Consensus 3 ~L~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~-----------------~~~~~~~D 64 (259)
T d1ja9a_ 3 PLAGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA-----------------QGVAIQAD 64 (259)
T ss_dssp TTTTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC-----------------CEEEEECC
T ss_pred CCCCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC-----------------CceEecCC
Confidence 4679999988955 54555555544 26788764 6777878888888766653 78899999
Q ss_pred cccccc---------CCCCceeEEEECCCCCCCCC
Q 043334 105 LLAYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 105 l~~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
+.+... ...+..|++|+|.......+
T Consensus 65 ~~~~~~v~~~~~~~~~~~g~idilinnag~~~~~~ 99 (259)
T d1ja9a_ 65 ISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCD 99 (259)
T ss_dssp TTSHHHHHHHHHHHHHHHSCEEEEECCCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 876421 11247999999987764443
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=89.46 E-value=0.87 Score=45.22 Aligned_cols=83 Identities=19% Similarity=0.113 Sum_probs=57.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++..+..|+.
T Consensus 6 LkgK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-----------------~~~~~~~~Dv~ 67 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-----------------FQVTGSVCDAS 67 (259)
T ss_dssp CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CceEEEeccCC
Confidence 57899999998777 444444433 37899999999999988877775544 36889999986
Q ss_pred cccc---------CC-CCceeEEEECCCCCCCC
Q 043334 107 AYCR---------DH-DIQLERIVGCIPQILNP 129 (903)
Q Consensus 107 ~~~~---------~~-~~~fD~Iv~NpPy~~~~ 129 (903)
+... .. .+..|++|+|.......
T Consensus 68 ~~~~v~~~~~~~~~~~~g~idilvnnAG~~~~~ 100 (259)
T d1xq1a_ 68 LRPEREKLMQTVSSMFGGKLDILINNLGAIRSK 100 (259)
T ss_dssp SHHHHHHHHHHHHHHHTTCCSEEEEECCC----
T ss_pred CHHHHHHHHHHHHHHhCCCcccccccccccCCC
Confidence 5421 11 24799999997766443
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=1.3 Score=43.99 Aligned_cols=123 Identities=15% Similarity=0.078 Sum_probs=76.0
Q ss_pred CCeE-EEeCCccCHHHHHHHHHh---CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 31 DKTV-AELGCGNGWITIAIAEKW---LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 31 ~~~V-LDlGCGtG~lsi~la~~~---~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
|++| |==|+++| ++.++|+.+ ++.+|+.++.+++.++.+.+.+...+ .++.+++.|+.
T Consensus 2 g~rVAlVTGas~G-IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-----------------~~~~~~~~Dvs 63 (275)
T d1wmaa1 2 GIHVALVTGGNKG-IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-----------------LSPRFHQLDID 63 (275)
T ss_dssp CCCEEEESSCSSH-HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-----------------CCCEEEECCTT
T ss_pred CCeEEEECCCCCH-HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEEecC
Confidence 5677 45565555 665555543 47899999999999998888876554 36889999987
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCccchhhHHhhhhhhhhhhhccccccccccccccccHHHHHHHHHHHh
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNPDAMSKIITENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 177 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~~~l~~~~~~~~~~~~~~~l~~~~al~~~v~~~~g~~~~~~~l~~~~ 177 (903)
+... ...++.|++|+|--............+ ++...+ +-.+--...+.+.+.
T Consensus 64 ~~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~-------~~~~~~------------~vN~~g~~~l~~~~l 124 (275)
T d1wmaa1 64 DLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHI-------QAEVTM------------KTNFFGTRDVCTELL 124 (275)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHH-------HHHHHH------------HHHTHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHH-------HHHHHH------------HHHHHHHHHHHHHHH
Confidence 6521 112489999999766543332222111 110000 001111236678888
Q ss_pred hcccCCcEEEEEe
Q 043334 178 GVIKPSGIMIFNM 190 (903)
Q Consensus 178 ~~LkpgG~ll~~~ 190 (903)
..|+++|+++...
T Consensus 125 p~m~~~g~ivnis 137 (275)
T d1wmaa1 125 PLIKPQGRVVNVS 137 (275)
T ss_dssp GGEEEEEEEEEEC
T ss_pred HHHHhcCCccccc
Confidence 8999999976644
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=89.14 E-value=0.85 Score=45.48 Aligned_cols=80 Identities=21% Similarity=0.177 Sum_probs=56.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+.+|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+... .++.+++.|+.
T Consensus 4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~------------------~~~~~~~~Dv~ 64 (268)
T d2bgka1 4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP------------------DVISFVHCDVT 64 (268)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT------------------TTEEEEECCTT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC------------------CceEEEEccCC
Confidence 57899999997777 555555443 3789999999999888777665322 35888899987
Q ss_pred cccc---------CCCCceeEEEECCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQIL 127 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~ 127 (903)
+... ...++.|++|+|-....
T Consensus 65 ~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~ 94 (268)
T d2bgka1 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLS 94 (268)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHHcCCcceecccccccc
Confidence 6421 11247999999976543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.56 E-value=0.94 Score=44.94 Aligned_cols=86 Identities=24% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=.|+..| ++.++++.+ .+++|+.+|.+++-++.+.+.+...+ .++.++..|+.
T Consensus 4 L~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-----------------~~~~~~~~D~s 65 (258)
T d1ae1a_ 4 LKGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-----------------LNVEGSVCDLL 65 (258)
T ss_dssp CTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CCceEEEeecC
Confidence 57899999998765 555444443 37899999999998888887776554 36888899986
Q ss_pred cccc----------CCCCceeEEEECCCCCCCCCcc
Q 043334 107 AYCR----------DHDIQLERIVGCIPQILNPNPD 132 (903)
Q Consensus 107 ~~~~----------~~~~~fD~Iv~NpPy~~~~~~~ 132 (903)
+... ..++..|++++|..........
T Consensus 66 ~~~~~~~~~~~~~~~~~g~idilinnag~~~~~~~~ 101 (258)
T d1ae1a_ 66 SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK 101 (258)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTT
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeccccccccCccc
Confidence 6421 1224789999997776554443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=88.44 E-value=1.2 Score=43.94 Aligned_cols=84 Identities=19% Similarity=0.085 Sum_probs=59.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|.+.| ++.++++.+ .+++|+.+|.+++.++.+.+.+.. ..++.++++|+.
T Consensus 4 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~------------------~~~~~~~~~Dv~ 64 (251)
T d1zk4a1 4 LDGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT------------------PDQIQFFQHDSS 64 (251)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC------------------TTTEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC------------------CCcEEEEEccCC
Confidence 57899999996665 555555543 378999999999988877766521 147899999997
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCc
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNP 131 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~ 131 (903)
+... ..-++.|++|+|.......+.
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~ 98 (251)
T d1zk4a1 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSV 98 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCT
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeccccccccch
Confidence 6521 112479999999777654443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=88.27 E-value=0.55 Score=46.83 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=58.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+.+|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+.. ..++.++++|+.
T Consensus 3 l~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~--------------~~~~~~~~~Dvt 67 (264)
T d1spxa_ 3 FAEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS--------------EQNVNSVVADVT 67 (264)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC--------------GGGEEEEECCTT
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC--------------cCceEEEEccCC
Confidence 46889999997766 555555543 3789999999999999888887665431 246899999986
Q ss_pred cccc---------CCCCceeEEEECCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQ 125 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy 125 (903)
+... ..-++.|++|.|--.
T Consensus 68 ~~~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 68 TDAGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred CHHHHHHHHHHHHHHhCCCCEeeccccc
Confidence 6421 111479999998554
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=87.81 E-value=1.3 Score=43.70 Aligned_cols=79 Identities=22% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+ ..+..++++|+.
T Consensus 4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 62 (253)
T d1hxha_ 4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--------------------GERSMFVRHDVS 62 (253)
T ss_dssp TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--------------------CTTEEEECCCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCCeEEEEeecC
Confidence 57899999997666 555555543 3789999999998887766554 135778888886
Q ss_pred cccc---------CCCCceeEEEECCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILN 128 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~ 128 (903)
+... ..-++.|++|+|......
T Consensus 63 ~~~~~~~~~~~~~~~~g~iDilVnnAG~~~~ 93 (253)
T d1hxha_ 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLP 93 (253)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEecccccCC
Confidence 6421 111478999999776543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.77 E-value=0.33 Score=44.60 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=33.9
Q ss_pred CCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 29 LKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 29 ~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
.++++||=.|||. |..++.+++.. +.+|+++|.+++-++.+++
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh
Confidence 4788999999986 44556666654 6799999999999888765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=87.74 E-value=0.86 Score=42.28 Aligned_cols=44 Identities=25% Similarity=0.160 Sum_probs=36.5
Q ss_pred CCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Q 043334 30 KDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWINL 74 (903)
Q Consensus 30 ~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~n~ 74 (903)
+..+|+=||+|. |..++..|..+ +++|+.+|.+++.++..+...
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~ 75 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLF 75 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhh
Confidence 567999999995 77788888876 789999999999988776544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.71 E-value=0.32 Score=45.33 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=39.8
Q ss_pred HHHhhcCCCCCCCCCeEEEeCCc--cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 18 YEGLNRHPDSILKDKTVAELGCG--NGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 18 ~~~L~~~~~~~~~~~~VLDlGCG--tG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
|..|.+..+ +.++++||=.|+| .|..++.+|+.. +++|+++|.+++-.+.+++
T Consensus 17 ~~al~~~~~-l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~ 71 (179)
T d1qora2 17 YYLLRKTYE-IKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK 71 (179)
T ss_dssp HHHHHTTSC-CCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh
Confidence 444443332 4578899988655 577888888876 6899999999999988874
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=87.17 E-value=0.53 Score=43.51 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCCCCeEEEeCCc-cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 28 ILKDKTVAELGCG-NGWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 28 ~~~~~~VLDlGCG-tG~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
+.+|++||=.||| .|.+++.+++..+...|+++|.+++-++.+++.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l 72 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 72 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence 4578999999887 345677888888778999999999998888753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.86 E-value=0.31 Score=45.44 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=34.4
Q ss_pred CCCCCeEEEeCC-c-cCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELGC-G-NGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlGC-G-tG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
..++++||=.|. | .|..++.+++.. +++|++++.+++-.+.+++
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~ 70 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA 70 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH
T ss_pred CCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccc
Confidence 457899999884 3 467788888876 6799999999987777664
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=86.36 E-value=1.1 Score=41.39 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=37.4
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
+.+|++||=+|||- |..++.+++..++.+|+++|.+++-.+.+++.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~ 72 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 72 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence 45789999999964 44666777777778999999999999888754
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=86.27 E-value=1.2 Score=43.98 Aligned_cols=81 Identities=16% Similarity=0.049 Sum_probs=55.8
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|.+.| ++.++|+.+ .+++|+.+|.+++.++...+.+ ..++.++++|+.
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 61 (254)
T d1hdca_ 3 LSGKTVIITGGARG-LGAEAARQAVAAGARVVLADVLDEEGAATAREL--------------------GDAARYQHLDVT 61 (254)
T ss_dssp CCCSEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--------------------GGGEEEEECCTT
T ss_pred CCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------CCceEEEEcccC
Confidence 67899999998777 444444443 3789999999998776554332 136889999987
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
+... ..-++.|++|.|........
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~ 94 (254)
T d1hdca_ 62 IEEDWQRVVAYAREEFGSVDGLVNNAGISTGMF 94 (254)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSC
T ss_pred CHHHHHHHHHHHHHHcCCccEEEecCccccccc
Confidence 6421 11147999999976654433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=86.22 E-value=1.2 Score=43.93 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCC-HHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDIN-PRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis-~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++|+.+|=-|++.| ++.++|+.+ .+++|+.+|.+ ++.++.+.+.+...+ ..++.++..|+
T Consensus 2 L~gK~alITGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~----------------g~~~~~~~~Dv 64 (260)
T d1x1ta1 2 LKGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH----------------GVKVLYDGADL 64 (260)
T ss_dssp CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH----------------TSCEEEECCCT
T ss_pred CCcCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc----------------CCcEEEEECCC
Confidence 46889998897776 444444432 37899999996 566766665553321 13788999999
Q ss_pred ccccc---------CCCCceeEEEECCCCCCCCC
Q 043334 106 LAYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 106 ~~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
.+... ..-++.|++|+|-.......
T Consensus 65 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~ 98 (260)
T d1x1ta1 65 SKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTAL 98 (260)
T ss_dssp TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEeecccccCCc
Confidence 76521 11147999999977654433
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=0.82 Score=47.21 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=100.4
Q ss_pred CCCcChhHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhcc-c-c-eeee-ccccccCCcchhhhhhcccCCCC
Q 043334 342 PPAGSKRFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLFS-P-R-LAIV-DERLTRHLPKHWLTSLTIKGTDT 417 (903)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 417 (903)
|..+...+|+-||.|+ + +++|||+|.+.=.+||..+++.+. | + .+++ +... . .+.......+
T Consensus 54 Pd~~~~~Lr~~ia~~~----g--v~pe~I~it~Gs~eai~~~~~~~~~pgd~~Vl~~~P~y--~---~~~~~~~~~g--- 119 (354)
T d1fg7a_ 54 PECQPKAVIENYAQYA----G--VKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY--G---MYSVSAETIG--- 119 (354)
T ss_dssp CCSSCHHHHHHHHHHH----T--SCGGGEEEESHHHHHHHHHHHHHCCTTTCEEEECSSSC--T---HHHHHHHHHT---
T ss_pred CCCcHHHHHHHHHHHh----C--CChHHeeeccCchHHHHHHHHHhhcccccccccccccc--c---cchhhhhccC---
Confidence 6778889999999886 3 579999999999999999999774 4 2 2222 2221 1 1111111111
Q ss_pred CCCCCCeeEEeeCCc--c--hhHHHHHHHhcCCeEEEeeccc---chhccHHHHHHHHHHHhhccceEEeeccccccccc
Q 043334 418 ENSSEHELTVIEAPR--Q--SDLMVELIKKLKPQVVISGIGD---FEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSS 490 (903)
Q Consensus 418 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 490 (903)
.++..+.... + .+.+.+.+. ++++|+..--+ +-..+....+.+...++. +..+++|.. |.+.+.
T Consensus 120 -----~~v~~~~~~~~~~~d~~~l~~~~~--~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~-~~~~iidd~-~~~f~~ 190 (354)
T d1fg7a_ 120 -----VECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLINPQDFRTLLELTRG-KAIVVADEA-YIEFCP 190 (354)
T ss_dssp -----CEEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTT-TCEEEEECT-TGGGSG
T ss_pred -----ceeeccccccccccchhhhhhccc--ccceeeccCCCccceeEeeecccccccccccc-ccccccccc-chhhcc
Confidence 1111111100 1 233333333 34444443322 555555566665555554 555888875 445553
Q ss_pred CCCchhHhhhhhcCCCCchhHhhhhhhcccccCCceeeeeccchHHHHHHhhhhh
Q 043334 491 LPSSNGVLKYLAGNVLPSHAAVICGLVKNQVYSDLEVAFLISEEEAIFKALSKTV 545 (903)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 545 (903)
....... ..-..+.+|+++|=|.--.+-|-+.+++. ++.+.+.|.+..
T Consensus 191 ~~~~~~~------~~~~~~~iv~~S~SK~~~laGlRiGy~i~-~~~~i~~l~~~~ 238 (354)
T d1fg7a_ 191 QASLAGW------LAEYPHLAILRTLSKAFALAGLRCGFTLA-NEEVINLLMKVI 238 (354)
T ss_dssp GGCSGGG------TTTCTTEEEEEESSSTTCCGGGCCEEEEE-CHHHHHHHHHHS
T ss_pred ccccchh------hcccccceEEeCCccccCCCccccccccc-cchhhhhhhhhc
Confidence 2222111 12355677899999988789999999997 556667776543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.61 E-value=1.4 Score=43.07 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=56.0
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
.++|+++|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.. .++..++.|+
T Consensus 4 ~L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---------------------~~~~~~~~Dv 61 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---------------------PGIEPVCVDL 61 (244)
T ss_dssp CCTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCT
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEEeC
Confidence 357999999997766 555555544 3789999999998877665433 2467788888
Q ss_pred cccc-----cCCCCceeEEEECCCCCCCCC
Q 043334 106 LAYC-----RDHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 106 ~~~~-----~~~~~~fD~Iv~NpPy~~~~~ 130 (903)
.+.. ...-++.|++|+|-......+
T Consensus 62 ~d~~~v~~~~~~~g~iDilVnnAg~~~~~~ 91 (244)
T d1pr9a_ 62 GDWEATERALGSVGPVDLLVNNAAVALLQP 91 (244)
T ss_dssp TCHHHHHHHHTTCCCCCEEEECCCCCCCBC
T ss_pred CCHHHHHHHHHHhCCceEEEeccccccccc
Confidence 6541 122358999999976654433
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=85.17 E-value=1.4 Score=44.09 Aligned_cols=89 Identities=9% Similarity=0.033 Sum_probs=61.3
Q ss_pred CCCCCCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEE
Q 043334 25 PDSILKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHE 102 (903)
Q Consensus 25 ~~~~~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~ 102 (903)
|...++|+++|=-|++.| ++.++|+.+ .|++|+.+|.+++.++.+.+.+.... ..++.++.
T Consensus 19 ~~~~l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~----------------g~~~~~~~ 81 (294)
T d1w6ua_ 19 PPNSFQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT----------------GNKVHAIQ 81 (294)
T ss_dssp CTTTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH----------------SSCEEEEE
T ss_pred CCCCCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc----------------CCceEEEE
Confidence 334578999999998766 555555443 37899999999988877766553221 14688899
Q ss_pred cccccccc---------CCCCceeEEEECCCCCCCCC
Q 043334 103 SDLLAYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 103 gDl~~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
.|+.+... ...+..|++|+|........
T Consensus 82 ~D~~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~ 118 (294)
T d1w6ua_ 82 CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISP 118 (294)
T ss_dssp CCTTCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSC
T ss_pred ecccChHHHHHHhhhhhhhccccchhhhhhhhccccc
Confidence 99866521 11247999999977665444
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.90 E-value=0.66 Score=43.34 Aligned_cols=56 Identities=23% Similarity=0.073 Sum_probs=40.1
Q ss_pred HHHHHhhcCCCCCCCCCeEEEeCCcc--CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 16 TFYEGLNRHPDSILKDKTVAELGCGN--GWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 16 ~~~~~L~~~~~~~~~~~~VLDlGCGt--G~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
+-|..|.+..+ +.+|++||=.|+|. |..++.+++.. +++|++++-+++-++.+++.
T Consensus 16 TA~~al~~~~~-v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~ 73 (182)
T d1v3va2 16 TAYFGLLEVCG-VKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI 73 (182)
T ss_dssp HHHHHHHTTTC-CCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHHhC-CCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh
Confidence 33444544433 45789999888754 56778888876 68999999999888777653
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.73 E-value=1.2 Score=43.94 Aligned_cols=77 Identities=19% Similarity=0.101 Sum_probs=54.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|+++| ++.++|+.+ .+++|+.+|.+++.++...+.. .++.++++|+.
T Consensus 4 l~GK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---------------------~~~~~~~~Dvs 61 (250)
T d1ydea1 4 YAGKVVVVTGGGRG-IGAGIVRAFVNSGARVVICDKDESGGRALEQEL---------------------PGAVFILCDVT 61 (250)
T ss_dssp TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------------------TTEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEccCC
Confidence 57899999997776 555555443 3789999999998887665443 35788899986
Q ss_pred cccc---------CCCCceeEEEECCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQIL 127 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~ 127 (903)
+... ..-++.|++|+|.....
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~~ 91 (250)
T d1ydea1 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHP 91 (250)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecccccc
Confidence 6421 11147999999977543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=84.29 E-value=1.9 Score=42.16 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=54.0
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=.|++.| ++.++|+.+ .+++|+.++.+.+.++...+.+ ..++.+++.|+.
T Consensus 3 l~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dls 61 (241)
T d2a4ka1 3 LSGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAVAAL--------------------EAEAIAVVADVS 61 (241)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--------------------CSSEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--------------------CCceEEEEecCC
Confidence 57899999997766 555555544 4789999999998776544322 246888999986
Q ss_pred ccccC---------CCCceeEEEECCCCCC
Q 043334 107 AYCRD---------HDIQLERIVGCIPQIL 127 (903)
Q Consensus 107 ~~~~~---------~~~~fD~Iv~NpPy~~ 127 (903)
+...- .-++.|++|+|-....
T Consensus 62 ~~~~i~~~~~~i~~~~g~iDiLinnAg~~~ 91 (241)
T d2a4ka1 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAH 91 (241)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEEGGGGTT
T ss_pred CHHHHHHHHHHHHHHhCCccEecccccccc
Confidence 65211 1147999999865443
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=83.87 E-value=1.7 Score=42.74 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=58.4
Q ss_pred CCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccc
Q 043334 31 DKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAY 108 (903)
Q Consensus 31 ~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~ 108 (903)
|+.+|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++.++++|+.+.
T Consensus 2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-----------------~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-----------------VEADGRTCDVRSV 63 (257)
T ss_dssp CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTTCH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEeecCCH
Confidence 566788886665 555555543 37899999999999998888776554 3689999998765
Q ss_pred cc---------CCCCceeEEEECCCCCCCCC
Q 043334 109 CR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 109 ~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
.. ..-++.|++|.|-......+
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~ 94 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNAGRPGGGA 94 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCCCCCSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecccccCCCC
Confidence 21 11247999999976654433
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=83.65 E-value=2 Score=42.15 Aligned_cols=77 Identities=19% Similarity=0.149 Sum_probs=51.8
Q ss_pred CCCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 28 ILKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 28 ~~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
.++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++..+.+++ . +..+++.|+
T Consensus 2 ~l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~-~----------------------~~~~~~~Dv 57 (248)
T d2d1ya1 2 LFAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEA-I----------------------GGAFFQVDL 57 (248)
T ss_dssp TTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHH-H----------------------TCEEEECCT
T ss_pred ccCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-c----------------------CCeEEEEeC
Confidence 367899999996666 555555443 37899999999887665432 1 245678888
Q ss_pred ccccc---------CCCCceeEEEECCCCCCC
Q 043334 106 LAYCR---------DHDIQLERIVGCIPQILN 128 (903)
Q Consensus 106 ~~~~~---------~~~~~fD~Iv~NpPy~~~ 128 (903)
.+... ..-++.|++|+|-.....
T Consensus 58 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~ 89 (248)
T d2d1ya1 58 EDERERVRFVEEAAYALGRVDVLVNNAAIAAP 89 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCeEEEeCcCCCC
Confidence 66421 111479999999765543
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=83.65 E-value=0.87 Score=47.58 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhhcCcccCCCCceEEecchHHHHHHhhhhc-----cc-ceeeecccc-ccCCcchhhhhhcccCCCCCCC
Q 043334 348 RFRNLIADFMKKYHHIPLNADNVVVFPSRAVAIENALRLF-----SP-RLAIVDERL-TRHLPKHWLTSLTIKGTDTENS 420 (903)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 420 (903)
..|+.||.|+. ..+|+|++-|+-.+|+..+++.+ .| +-.++.... ...+ .+...++ .
T Consensus 52 ~~R~~iA~~lg------~~~~~I~~~~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~--~~~~~~~--------~ 115 (391)
T d1p3wa_ 52 IARNQIADLVG------ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVL--DTCRQLE--------R 115 (391)
T ss_dssp HHHHHHHHHHT------CCGGGEEEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHH--HHHHHHH--------H
T ss_pred HHHHHHHHHcC------CCCCcEEEECCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHH--HHHHHHH--------H
Confidence 56888888875 46899999999999988787653 23 344443332 2222 2223343 2
Q ss_pred CCCeeEEeeCCc--chhHHHHHHHhcCCe--EE-EeecccchhccHHHHHHHHHHHhhccceEEeecccccccccC
Q 043334 421 SEHELTVIEAPR--QSDLMVELIKKLKPQ--VV-ISGIGDFEAVTSSAFVHLLDVTREVGSRLFLDISDHFELSSL 491 (903)
Q Consensus 421 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 491 (903)
.+.+++.+.... +.| +-++.++++++ +| |+.+.. --=+..-.+.|.+.+++.|+++++|....++....
T Consensus 116 ~G~~v~~v~~~~~~~~d-~~~~~~~i~~~T~lv~is~~~n-~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~ 189 (391)
T d1p3wa_ 116 EGFEVTYLAPQRNGIID-LKELEAAMRDDTILVSIMHVNN-EIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI 189 (391)
T ss_dssp TTCEEEEECCCTTSCCC-HHHHHHHCCTTEEEEECCSBCT-TTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCC
T ss_pred cCCEEEEeCCCCCCeEc-HHHHHHhCCCCcEEEEEECCCC-CCeeECCHHHHHHHhccCCcEEEEeeccccCCccc
Confidence 234555554321 122 23344444444 33 333332 21122335678889999999999999998776543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=83.39 E-value=2.3 Score=41.56 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=54.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++++++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+ +..++.+|+.
T Consensus 3 L~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----------------------~~~~~~~Dv~ 59 (242)
T d1ulsa_ 3 LKDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAV----------------------GAHPVVMDVA 59 (242)
T ss_dssp TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------------------TCEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----------------------CCeEEEEecC
Confidence 46899999998777 555555543 3789999999998887765432 4667888986
Q ss_pred cccc---------CCCCceeEEEECCCCCCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNP 129 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~ 129 (903)
+... ..-++.|++|.|-......
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~ 91 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGITRDN 91 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCC
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcccccC
Confidence 6421 1114799999997655433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=83.07 E-value=1.1 Score=44.29 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=56.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++++.+ .+++|+.+|.+++.++.+.+.+...+. ..++..+++|+.
T Consensus 2 l~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~---------------~~~~~~~~~Dvt 65 (258)
T d1iy8a_ 2 FTDRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP---------------DAEVLTTVADVS 65 (258)
T ss_dssp CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT---------------TCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC---------------CCeEEEEeccCC
Confidence 46889999998777 444333332 378999999999999887776654432 246888999987
Q ss_pred cccc---------CCCCceeEEEECCCC
Q 043334 107 AYCR---------DHDIQLERIVGCIPQ 125 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy 125 (903)
+... ..-++.|++|+|-..
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 66 DEAQVEAYVTATTERFGRIDGFFNNAGI 93 (258)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 6521 111479999998654
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=83.02 E-value=1.4 Score=43.41 Aligned_cols=79 Identities=18% Similarity=0.016 Sum_probs=52.1
Q ss_pred CCCCeEEEeCCcc--CHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcc
Q 043334 29 LKDKTVAELGCGN--GWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 29 ~~~~~VLDlGCGt--G~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
++|+++|=-|+++ | ++.++|+.+ .+++|+..|.+++..+.+.+..... .+..+++.|
T Consensus 6 L~gK~alITGas~~~G-IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~------------------~~~~~~~~D 66 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRS-LGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL------------------GGALLFRAD 66 (256)
T ss_dssp CTTCEEEEESCCCSSS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT------------------TCCEEEECC
T ss_pred CCCCEEEEECCCCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc------------------Ccccccccc
Confidence 5789999999754 5 444444332 3789999999987777665544332 246678888
Q ss_pred cccccc---------CCCCceeEEEECCCCC
Q 043334 105 LLAYCR---------DHDIQLERIVGCIPQI 126 (903)
Q Consensus 105 l~~~~~---------~~~~~fD~Iv~NpPy~ 126 (903)
+.+... ...++.|++|.|-...
T Consensus 67 ~~~~~~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 67 VTQDEELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHhcCCceEEEeccccc
Confidence 866421 1124799999886543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.88 E-value=1.1 Score=43.98 Aligned_cols=82 Identities=16% Similarity=0.009 Sum_probs=56.9
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+ .+++.++++|+.
T Consensus 4 L~gK~alITGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--------------------~~~~~~~~~Dv~ 62 (244)
T d1nffa_ 4 LTGKVALVSGGARG-MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--------------------ADAARYVHLDVT 62 (244)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--------------------GGGEEEEECCTT
T ss_pred cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------------------hCcceEEEeecC
Confidence 57899999998777 444444433 3789999999998887765544 136788899986
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCc
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNP 131 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~ 131 (903)
+... ...+..|++|.|.........
T Consensus 63 ~~~~v~~~~~~~~~~~g~idilinnAG~~~~~~~ 96 (244)
T d1nffa_ 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTI 96 (244)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEECCcccCCCch
Confidence 6521 111479999999876654433
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.36 E-value=0.69 Score=43.15 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=38.6
Q ss_pred CCCCCeEEEeCCcc-CHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Q 043334 28 ILKDKTVAELGCGN-GWITIAIAEKWLPSKVYGLDINPRAIRISWIN 73 (903)
Q Consensus 28 ~~~~~~VLDlGCGt-G~lsi~la~~~~~~~V~giDis~~al~~A~~n 73 (903)
..++++|+=+|||. |..++.+++..+..+|+++|.+++-++.|++.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 45789999999985 55677778877778999999999999999865
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.91 E-value=6.3 Score=38.37 Aligned_cols=80 Identities=16% Similarity=0.014 Sum_probs=55.9
Q ss_pred eEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 33 TVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 33 ~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
.+|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+ .++.++++|+.+...
T Consensus 3 ValITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-----------------~~~~~~~~Dv~~~~~ 64 (255)
T d1gega_ 3 VALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-----------------GHAVAVKVDVSDRDQ 64 (255)
T ss_dssp EEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-----------------CCEEEEECCTTSHHH
T ss_pred EEEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----------------CcEEEEEeeCCCHHH
Confidence 3466786655 555555443 37899999999999998887776554 368899999876521
Q ss_pred ---------CCCCceeEEEECCCCCCCCC
Q 043334 111 ---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 111 ---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
..-++.|++|+|-......+
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAG~~~~~~ 93 (255)
T d1gega_ 65 VFAAVEQARKTLGGFDVIVNNAGVAPSTP 93 (255)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCCCCCBC
T ss_pred HHHHHHHHHHHhCCccEEEecccccccCc
Confidence 11248999999976654433
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.77 E-value=0.63 Score=43.28 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=33.9
Q ss_pred CCCCCeEEEeC--CccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 28 ILKDKTVAELG--CGNGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 28 ~~~~~~VLDlG--CGtG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
+.++++||=.| .|.|.+++.+|+.. +.+|++++-+++-.+.+++
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~ 68 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR 68 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccc
Confidence 45688999877 34677888888876 6799999988877777653
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=81.39 E-value=3.7 Score=40.38 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=56.6
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINP-RAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDL 105 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~-~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl 105 (903)
++|+++|=-|.+.| ++.++|+.+ .+++|+.+|.+. +.++.+.+.+...+ .++.+++.|+
T Consensus 5 L~gK~alITGas~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-----------------~~~~~~~~Dv 66 (261)
T d1geea_ 5 LEGKVVVITGSSTG-LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-----------------GEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-----------------CEEEEEECCT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-----------------CcEEEEEccC
Confidence 57899999997777 455444443 378999999874 45666666665444 3688899999
Q ss_pred ccccc---------CCCCceeEEEECCCCCCCC
Q 043334 106 LAYCR---------DHDIQLERIVGCIPQILNP 129 (903)
Q Consensus 106 ~~~~~---------~~~~~fD~Iv~NpPy~~~~ 129 (903)
.+... ...++.|++|.|.......
T Consensus 67 t~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~ 99 (261)
T d1geea_ 67 TVESDVINLVQSAIKEFGKLDVMINNAGLENPV 99 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEeeccceecCCc
Confidence 76521 1124799999997765433
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.29 E-value=4.3 Score=39.65 Aligned_cols=84 Identities=23% Similarity=0.090 Sum_probs=58.6
Q ss_pred CCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEccccc
Q 043334 30 KDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLA 107 (903)
Q Consensus 30 ~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~ 107 (903)
+|+.+|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+...+....- ..++.+++.|+.+
T Consensus 2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~---------------~~~~~~~~~Dv~~ 65 (254)
T d2gdza1 2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE---------------PQKTLFIQCDVAD 65 (254)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC---------------GGGEEEEECCTTS
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC---------------CCcEEEEEeecCC
Confidence 5788999997766 555555543 478999999999988887766633211 1378899999876
Q ss_pred ccc---------CCCCceeEEEECCCCCCCC
Q 043334 108 YCR---------DHDIQLERIVGCIPQILNP 129 (903)
Q Consensus 108 ~~~---------~~~~~fD~Iv~NpPy~~~~ 129 (903)
... ..-++.|++|+|-......
T Consensus 66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~~~~ 96 (254)
T d2gdza1 66 QQQLRDTFRKVVDHFGRLDILVNNAGVNNEK 96 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCSS
T ss_pred HHHHHHHHHHHHHHcCCcCeecccccccccc
Confidence 521 1114799999997665433
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.29 E-value=2.4 Score=41.35 Aligned_cols=78 Identities=13% Similarity=0.034 Sum_probs=53.7
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|++.| ++.++++.+ .+++|+.+|.+++.++...+.. .++..++.|+.
T Consensus 3 l~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---------------------~~~~~~~~Dv~ 60 (242)
T d1cyda_ 3 FSGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---------------------PGIEPVCVDLG 60 (242)
T ss_dssp CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---------------------TTCEEEECCTT
T ss_pred CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------------------CCCeEEEEeCC
Confidence 67899999997766 555544443 3789999999988776554432 25677888886
Q ss_pred cccc-----CCCCceeEEEECCCCCCC
Q 043334 107 AYCR-----DHDIQLERIVGCIPQILN 128 (903)
Q Consensus 107 ~~~~-----~~~~~fD~Iv~NpPy~~~ 128 (903)
+... ..-++.|++|.|-.....
T Consensus 61 ~~~~v~~~~~~~g~iDilVnnAg~~~~ 87 (242)
T d1cyda_ 61 DWDATEKALGGIGPVDLLVNNAALVIM 87 (242)
T ss_dssp CHHHHHHHHTTCCCCSEEEECCCCCCC
T ss_pred CHHHHHHHHHHcCCCeEEEECCccccc
Confidence 5421 222589999999765543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.26 E-value=1.5 Score=43.29 Aligned_cols=82 Identities=22% Similarity=0.125 Sum_probs=57.4
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLL 106 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~ 106 (903)
++|+++|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+ + .++.++.+|+.
T Consensus 3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~-----------------~~~~~~~~Dvt 61 (256)
T d1k2wa_ 3 LDGKTALITGSARG-IGRAFAEAYVREGARVAIADINLEAARATAAEI---G-----------------PAACAIALDVT 61 (256)
T ss_dssp TTTEEEEEETCSSH-HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C-----------------TTEEEEECCTT
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C-----------------CceEEEEeeCC
Confidence 46889999997766 555555443 3789999999998887766544 1 46888999987
Q ss_pred cccc---------CCCCceeEEEECCCCCCCCCc
Q 043334 107 AYCR---------DHDIQLERIVGCIPQILNPNP 131 (903)
Q Consensus 107 ~~~~---------~~~~~fD~Iv~NpPy~~~~~~ 131 (903)
+... ..-++.|++|+|.......+.
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~ 95 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAALFDLAPI 95 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCG
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeeccccccccc
Confidence 6521 111479999999876654443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.18 E-value=2.7 Score=42.31 Aligned_cols=91 Identities=18% Similarity=0.052 Sum_probs=61.8
Q ss_pred CCCCCCeEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcc
Q 043334 27 SILKDKTVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESD 104 (903)
Q Consensus 27 ~~~~~~~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gD 104 (903)
..++|+.+|=-|++.| ++.++|+.+ .+++|+.+|.+++.++.+.+.+.....+ ....++.++.+|
T Consensus 8 g~L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~------------~~~~~~~~~~~D 74 (297)
T d1yxma1 8 GLLQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP------------TKQARVIPIQCN 74 (297)
T ss_dssp TTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT------------TCCCCEEEEECC
T ss_pred CCCCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc------------ccCceEEEEecc
Confidence 3468999999997776 555555443 3789999999999988877766543211 112478999999
Q ss_pred cccccc---------CCCCceeEEEECCCCCCCCC
Q 043334 105 LLAYCR---------DHDIQLERIVGCIPQILNPN 130 (903)
Q Consensus 105 l~~~~~---------~~~~~fD~Iv~NpPy~~~~~ 130 (903)
+.+... ...++.|++|+|.......+
T Consensus 75 vs~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~ 109 (297)
T d1yxma1 75 IRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSP 109 (297)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCeEEEEeeccccccCc
Confidence 876521 11247999999976554333
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.16 E-value=9.5 Score=36.94 Aligned_cols=82 Identities=15% Similarity=0.023 Sum_probs=56.5
Q ss_pred CCCCeEEEeCCccCHHHHHHHHHh-----CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEc
Q 043334 29 LKDKTVAELGCGNGWITIAIAEKW-----LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHES 103 (903)
Q Consensus 29 ~~~~~VLDlGCGtG~lsi~la~~~-----~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~g 103 (903)
++|+.+|=-|+++| ++.++|+.+ .+++|+.+|.+++.++.+.+.+...+. ..++.++.+
T Consensus 4 L~gKvalITGas~G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~---------------~~~~~~~~~ 67 (259)
T d1oaaa_ 4 LGCAVCVLTGASRG-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP---------------DLKVVLAAA 67 (259)
T ss_dssp CBSEEEEESSCSSH-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT---------------TSEEEEEEC
T ss_pred CCCCEEEEeCCCCH-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcC---------------CceEEEEEc
Confidence 45677777787766 566666654 478999999999999888777654432 247899999
Q ss_pred ccccccc-------------CCCCceeEEEECCCCC
Q 043334 104 DLLAYCR-------------DHDIQLERIVGCIPQI 126 (903)
Q Consensus 104 Dl~~~~~-------------~~~~~fD~Iv~NpPy~ 126 (903)
|+.+... ......|+++.|-.+.
T Consensus 68 Dvs~~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~~ 103 (259)
T d1oaaa_ 68 DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATL 103 (259)
T ss_dssp CTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCC
T ss_pred cCCCHHHHHHHHHHHHHhhhhccCceEEEEeccccc
Confidence 9866411 1123678888885543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.84 E-value=0.96 Score=42.29 Aligned_cols=43 Identities=14% Similarity=0.078 Sum_probs=34.9
Q ss_pred CCCCeEEEeCC--ccCHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Q 043334 29 LKDKTVAELGC--GNGWITIAIAEKWLPSKVYGLDINPRAIRISWI 72 (903)
Q Consensus 29 ~~~~~VLDlGC--GtG~lsi~la~~~~~~~V~giDis~~al~~A~~ 72 (903)
.++++||=-|. |.|..++.+++.. +++|+++--+++-.+.+++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~ 74 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV 74 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHh
Confidence 45788999885 4567888888876 7899999999988888764
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| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.24 E-value=1.1 Score=39.41 Aligned_cols=65 Identities=9% Similarity=0.048 Sum_probs=44.8
Q ss_pred eEEEeCCccCHHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHHhcccccCCCCcchhhhcccCCcEEEEEcccccccc
Q 043334 33 TVAELGCGNGWITIAIAEKW--LPSKVYGLDINPRAIRISWINLYLNALDEKGQPIYDAEKKTLLDRVEFHESDLLAYCR 110 (903)
Q Consensus 33 ~VLDlGCGtG~lsi~la~~~--~~~~V~giDis~~al~~A~~n~~~~gl~~~~~~~~~~~~~~~~~~v~~~~gDl~~~~~ 110 (903)
+|+=+ |.|.++..+++.+ .+..|+.+|.|++.++.++... .+.++.||..+...
T Consensus 2 ~IvI~--G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----------------------~~~vi~Gd~~~~~~ 57 (132)
T d1lssa_ 2 YIIIA--GIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----------------------DALVINGDCTKIKT 57 (132)
T ss_dssp EEEEE--CCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------------------SSEEEESCTTSHHH
T ss_pred EEEEE--CCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----------------------hhhhccCcccchhh
Confidence 34444 4588888888765 3679999999999998776442 36688899866521
Q ss_pred ---CCCCceeEEEE
Q 043334 111 ---DHDIQLERIVG 121 (903)
Q Consensus 111 ---~~~~~fD~Iv~ 121 (903)
..-...|.++.
T Consensus 58 l~~~~i~~a~~vv~ 71 (132)
T d1lssa_ 58 LEDAGIEDADMYIA 71 (132)
T ss_dssp HHHTTTTTCSEEEE
T ss_pred hhhcChhhhhhhcc
Confidence 11126788874
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