Citrus Sinensis ID: 043337

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-----
MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESPGDVIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSSTADAS
ccccccccccccccHHHHHHHHHHccccccccccccccccEEEEcccccEEEEEEccEEEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHccccccccccccEEcccEEEEEEEEEEEEcccccHHHHHHHHHHHHHcccccccEEEccccccEEEEcccccccccccccccccEEEEEEEEccccEEEccccHHHHHccccEEEEEEcccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccc
ccccccccccccHHHHHHHHHHHHccccccccccHccccEEEEEcccccEEEEEEcccEEEEEEEEEEccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccccEcHccEEEEcccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEcccccEEEEEccccccccccccccccEEEEEEEEccccEEEEcccHHHHHHcccEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccHHHcccccccccHHHccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
mdtrlantWRLTVNEKRFIETALSsgiridgrnpfeYRKLSIKfgredgssevqlgQTHIMGFVtgqlvqpyrdrpnegtlsiftefspmadpsfetgrpsesavELGRIVDrglresravdtESLCVLAGKLVWAIRIDLhildnggnlvDAANIAALASLLtfrrpecslggeddlevivhppeereplpliihhlpiavtfgffssesllvidpthheEAVMVGKMTATlnangdvcaiqkpggegVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIkrhptsitldgsvnlkeklnepsghnvvNELSRKhlekprlasaenasspgnngegeskssnfgrssrrdgatsnfvggaaswdpysrgvdsdFLKASlasrgtltpkkkqqdptgerkpneskpeespgdvipttsamdvsetgvhkggektlkdavkpkhkrkkkafsstadas
mdtrlantwrltvnekrfietalssgiridgrnpfEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPsfetgrpsesavelGRIVDRglresravdteslCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVetynteralrkikrhptsitldgsvnlkeklnepsghnvvNELSRKHLEKPRLasaenasspgnngegeskssnfgrssrRDGATSNFVGGAASWDPYSRGVDSDFLKAslasrgtltpkkkqqdptgerkpneskpeespgdvipttsamdvsetgvhkggektlkdavkpkhkrkkkafsstadas
MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHppeereplplIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESPGDVIPTTSAMDVSETGVHKGGEKTLkdavkpkhkrkkkAFSSTADAS
*****ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGR*****EVQLGQTHIMGFVTGQLVQPYR*******LSIF***********************GRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERAL***********************************************************************************************************************************************************************************
******N***LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFS******************LGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV********************************************************************************************************************************************************************************************
MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMAD************VELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGHNVVNELSRKH***********************************GATSNFVGGAASWDPYSRGVDSDFLKASLASRG***************************DVIPTTSAMDVSETGVHKGGEKTLKD********************
********WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGS********************************************************************************************************************************************************************
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MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDGSVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRRDGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESPGDVIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSSTADAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query465 2.2.26 [Sep-21-2011]
O74918291 Exosome complex component yes no 0.567 0.907 0.430 3e-63
Q4QR75437 Exosome complex component yes no 0.569 0.606 0.440 2e-60
Q9JHI7438 Exosome complex component yes no 0.569 0.605 0.440 3e-60
Q06265439 Exosome complex component yes no 0.569 0.603 0.436 2e-59
Q3SWZ4440 Exosome complex component yes no 0.569 0.602 0.432 8e-59
Q05636305 Exosome complex component yes no 0.572 0.872 0.386 9e-53
Q5JIR7272 Probable exosome complex yes no 0.531 0.908 0.401 2e-46
Q8U0M0277 Probable exosome complex yes no 0.554 0.931 0.374 8e-45
O59224274 Probable exosome complex yes no 0.531 0.901 0.378 1e-43
Q8TYC2267 Probable exosome complex yes no 0.526 0.917 0.367 8e-43
>sp|O74918|RRP45_SCHPO Exosome complex component rrp45 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp45 PE=3 SV=1 Back     alignment and function desciption
 Score =  243 bits (619), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 173/267 (64%), Gaps = 3/267 (1%)

Query: 12  TVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQP 71
           ++N K F+  +L  G+R+DGR   ++R L I+FG+E G  +V  G T +M  +T ++ +P
Sbjct: 8   SLNNKEFVLNSLEKGLRLDGRQLSDFRSLEIQFGKEYGQVDVSFGHTRVMARITTEITKP 67

Query: 72  YRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAG 131
           Y DRP +G  SI TE +P+A  +FE GR S+  + + R++++ +R S A+DTESLC+++G
Sbjct: 68  YTDRPFDGIFSITTELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISG 127

Query: 132 KLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREPL 191
           +  W +R  +H +++ GNLVDAA IA +A+L  FRRPE ++ GE   EV VHP EER P+
Sbjct: 128 QKCWHVRASVHFINHDGNLVDAACIAVIAALCHFRRPELTVVGE---EVTVHPVEERVPV 184

Query: 192 PLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGVL 251
           PL I H+PI VTF FF++  L ++D T  EE +  G MT TLN N +VC I K GG  + 
Sbjct: 185 PLSILHMPICVTFSFFNNGELAIVDATLEEEDLCNGSMTITLNKNREVCQIYKAGGIIID 244

Query: 252 QSVIMQCLRLASRMASDITKKIKDAVE 278
            S I+ C + A  +A  +   I+ A++
Sbjct: 245 PSKIISCAKTAFDIAVSVCSVIQQALD 271
Non-catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and cryptic unstable transcripts (CUTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and in RNA surveillance pathways, preventing translation of aberrant mRNAs. The catalytic inactive RNA exosome core complex of 9 subunits (Exo-9) is proposed to play a pivotal role in the binding and presentation of RNA for ribonucleolysis, and to serve as a scaffold for the association with catalytic subunits and accessory proteins or complexes. ski6 is part of the hexameric ring of RNase PH domain-containing subunits proposed to form a central channel which threads RNA substrates for degradation.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q4QR75|EXOS9_RAT Exosome complex component RRP45 OS=Rattus norvegicus GN=Exosc9 PE=2 SV=1 Back     alignment and function description
>sp|Q9JHI7|EXOS9_MOUSE Exosome complex component RRP45 OS=Mus musculus GN=Exosc9 PE=2 SV=1 Back     alignment and function description
>sp|Q06265|EXOS9_HUMAN Exosome complex component RRP45 OS=Homo sapiens GN=EXOSC9 PE=1 SV=3 Back     alignment and function description
>sp|Q3SWZ4|EXOS9_BOVIN Exosome complex component RRP45 OS=Bos taurus GN=EXOSC9 PE=2 SV=1 Back     alignment and function description
>sp|Q05636|RRP45_YEAST Exosome complex component RRP45 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP45 PE=1 SV=1 Back     alignment and function description
>sp|Q5JIR7|ECX2_PYRKO Probable exosome complex exonuclease 2 OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1633 PE=3 SV=1 Back     alignment and function description
>sp|Q8U0M0|ECX2_PYRFU Probable exosome complex exonuclease 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1567 PE=3 SV=1 Back     alignment and function description
>sp|O59224|ECX2_PYRHO Probable exosome complex exonuclease 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH1548 PE=3 SV=1 Back     alignment and function description
>sp|Q8TYC2|ECX2_METKA Probable exosome complex exonuclease 2 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=MK0380 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
255580609463 exosome complex exonuclease rrp45, putat 0.982 0.987 0.683 1e-178
225460698467 PREDICTED: exosome complex component rrp 0.961 0.957 0.671 1e-171
147779414476 hypothetical protein VITISV_000912 [Viti 0.961 0.939 0.657 1e-169
357447261449 Exosome complex exonuclease RRP45 [Medic 0.924 0.957 0.644 1e-165
356539154438 PREDICTED: exosome complex component rrp 0.907 0.963 0.644 1e-158
449442545452 PREDICTED: exosome complex component RRP 0.926 0.953 0.651 1e-157
449526860454 PREDICTED: exosome complex component RRP 0.926 0.949 0.648 1e-155
15232342438 3'-5'-exoribonuclease CER7 protein [Arab 0.911 0.968 0.609 1e-145
224054532382 predicted protein [Populus trichocarpa] 0.797 0.971 0.718 1e-145
297817356438 hypothetical protein ARALYDRAFT_486522 [ 0.903 0.958 0.602 1e-144
>gi|255580609|ref|XP_002531128.1| exosome complex exonuclease rrp45, putative [Ricinus communis] gi|223529292|gb|EEF31262.1| exosome complex exonuclease rrp45, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 316/462 (68%), Positives = 380/462 (82%), Gaps = 5/462 (1%)

Query: 1   MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
           M+ R+A+TWR++VNEK+FIE+AL S +RIDGRN  E+RKL+IKFGREDGSSEVQLGQTH+
Sbjct: 1   MEGRVASTWRMSVNEKKFIESALDSDLRIDGRNSHEFRKLTIKFGREDGSSEVQLGQTHV 60

Query: 61  MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
           MGFVT QLVQPYRDRPNEG+LSIF+EFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct: 61  MGFVTSQLVQPYRDRPNEGSLSIFSEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120

Query: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
           VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALA+LLTFRRPEC+LGGED  +V
Sbjct: 121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALAALLTFRRPECTLGGEDGQQV 180

Query: 181 IVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
           IVHPPE +EPLPLI+HHLPIAVTF FFSSE  +V+DPTH+EEAVM G+MT T+NANGD+C
Sbjct: 181 IVHPPEVKEPLPLIVHHLPIAVTFAFFSSEHTMVVDPTHNEEAVMTGRMTVTVNANGDIC 240

Query: 241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPTSITLDG 300
           +IQK GGEGV+QS IM CLR+ASR A  ITKKIKDAVE YNTERALRKIKRH TS+ ++ 
Sbjct: 241 SIQKAGGEGVMQSRIMHCLRVASRNAESITKKIKDAVEAYNTERALRKIKRHSTSVAVNV 300

Query: 301 S--VNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSRR 358
           S  ++++E  N+P     ++E+SR  +E+ +L S E++ S  N  +   +SS  G +S R
Sbjct: 301 STAIDVRELENKPFIQKGISEISRHQMERLKLTSEESSVSQSNGIDSGLRSSEQGGTSNR 360

Query: 359 DGATSNFVGGAASWDPYSRGVDSDFLKASLASRGTLTPKKKQQDPTGERKPNESKPEESP 418
           +G  +NF+GG + WDPYS+GVDSDFLKASLAS G   P K++    GE+K  ++  E++P
Sbjct: 361 EGNATNFLGGPSRWDPYSKGVDSDFLKASLASHGVSAPNKEK---GGEQKSTQAVDEKAP 417

Query: 419 GDVIPTTSAMDVSETGVHKGGEKTLKDAVKPKHKRKKKAFSS 460
               P TS  +  ETG+   GEKTLKDAVKPK+KR+K+A SS
Sbjct: 418 ETAKPATSVGETFETGIQTSGEKTLKDAVKPKNKRRKRASSS 459

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225460698|ref|XP_002270464.1| PREDICTED: exosome complex component rrp45-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147779414|emb|CAN74356.1| hypothetical protein VITISV_000912 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357447261|ref|XP_003593906.1| Exosome complex exonuclease RRP45 [Medicago truncatula] gi|355482954|gb|AES64157.1| Exosome complex exonuclease RRP45 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356539154|ref|XP_003538065.1| PREDICTED: exosome complex component rrp45-like [Glycine max] Back     alignment and taxonomy information
>gi|449442545|ref|XP_004139042.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449526860|ref|XP_004170431.1| PREDICTED: exosome complex component RRP45-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15232342|ref|NP_191609.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] gi|42572741|ref|NP_974466.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] gi|334186154|ref|NP_001190143.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] gi|7287998|emb|CAB81836.1| nucleolar autoantigen-like protein [Arabidopsis thaliana] gi|28393589|gb|AAO42214.1| putative nucleolar autoantigen protein [Arabidopsis thaliana] gi|28973593|gb|AAO64121.1| putative nucleolar autoantigen protein [Arabidopsis thaliana] gi|113196170|gb|ABI31441.1| CER7 [Arabidopsis thaliana] gi|332646547|gb|AEE80068.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] gi|332646548|gb|AEE80069.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] gi|332646549|gb|AEE80070.1| 3'-5'-exoribonuclease CER7 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224054532|ref|XP_002298307.1| predicted protein [Populus trichocarpa] gi|222845565|gb|EEE83112.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297817356|ref|XP_002876561.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp. lyrata] gi|297322399|gb|EFH52820.1| hypothetical protein ARALYDRAFT_486522 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query465
TAIR|locus:2103316438 CER7 "AT3G60500" [Arabidopsis 0.864 0.917 0.601 3.3e-127
TAIR|locus:2089215307 RRP45a "AT3G12990" [Arabidopsi 0.632 0.957 0.707 2e-111
MGI|MGI:1355319438 Exosc9 "exosome component 9" [ 0.576 0.611 0.416 3.4e-54
RGD|1307888437 Exosc9 "exosome component 9" [ 0.576 0.613 0.416 3.4e-54
UNIPROTKB|F1MB54440 EXOSC9 "Exosome complex compon 0.561 0.593 0.412 8.9e-54
UNIPROTKB|Q3SWZ4440 EXOSC9 "Exosome complex compon 0.561 0.593 0.412 8.9e-54
UNIPROTKB|F1S1T6442 EXOSC9 "Uncharacterized protei 0.561 0.590 0.412 1.5e-53
UNIPROTKB|Q06265439 EXOSC9 "Exosome complex compon 0.561 0.594 0.412 1.9e-53
POMBASE|SPCC757.08291 SPCC757.08 "exosome subunit Rr 0.567 0.907 0.404 8e-53
UNIPROTKB|F1NJI1387 EXOSC9 "Uncharacterized protei 0.479 0.576 0.410 1e-43
TAIR|locus:2103316 CER7 "AT3G60500" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1249 (444.7 bits), Expect = 3.3e-127, P = 3.3e-127
 Identities = 258/429 (60%), Positives = 322/429 (75%)

Query:     1 MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHI 60
             M+ RLAN WRLTVNE +F+ETAL S +R+DGR  ++YRKL+IKFG+E GSSEVQLGQTH+
Sbjct:     1 MEGRLANMWRLTVNESKFVETALQSELRVDGRGLYDYRKLTIKFGKEYGSSEVQLGQTHV 60

Query:    61 MGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRA 120
             MGFVT QLVQPY+DRPNEG+LSIFTEFSPMADPSFE GRP ESAVELGRI+DRGLRESRA
Sbjct:    61 MGFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRA 120

Query:   121 VDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEV 180
             VDTESLCVLAGK+VW++RIDLHILDNGGNLVDAANIAALA+L+TFRRP+C++GGE+  EV
Sbjct:   121 VDTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEV 180

Query:   181 IVHXXXXXXXXXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVC 240
             I+H          IIHHLPIA TFGFF+  +++V+DPT+ EEAVM G+MT T+NANGD+C
Sbjct:   181 IIHPLEEREPLPLIIHHLPIAFTFGFFNKGNIVVMDPTYVEEAVMCGRMTVTVNANGDIC 240

Query:   241 AIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT--SITL 298
             AIQKPG EGV QSVI+ CLRLAS  A+  TK I++ VE YN ER+L+K+KRHPT     +
Sbjct:   241 AIQKPGEEGVNQSVILHCLRLASSRAAATTKIIREEVEAYNCERSLQKVKRHPTLAKSEV 300

Query:   299 DG-SVNLKEKLNEPSGHNVVNELSRKHLEKPRLASAENASSPGNNGEGESKSSNFGRSSR 357
              G +V +KE+  + S      E+SR+H+E+ +L++ E                   RSS+
Sbjct:   301 SGPTVAVKEEHRKSSDQERAAEISREHVERLKLSTEEV------------------RSSK 342

Query:   358 RDGATSNFVGGAASWDPYSRGVDSDFLKASLASRG---TLTPKKKQQDPTGE-RKPN-ES 412
              + A +NF GG ++WDPYS  +D D LK SLASRG   T +   K+ + +G  +K   E 
Sbjct:   343 EEEA-ANFKGGPSNWDPYSEAMDVDSLKVSLASRGDPVTKSSSTKKMNGSGNAQKVGVEI 401

Query:   413 KPEESPGDV 421
               EE  G++
Sbjct:   402 SVEEVTGEL 410
GO:0000175 "3'-5'-exoribonuclease activity" evidence=IGI;ISS
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0010025 "wax biosynthetic process" evidence=IMP
GO:0005634 "nucleus" evidence=IDA
TAIR|locus:2089215 RRP45a "AT3G12990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:1355319 Exosc9 "exosome component 9" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1307888 Exosc9 "exosome component 9" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MB54 EXOSC9 "Exosome complex component RRP45" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SWZ4 EXOSC9 "Exosome complex component RRP45" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S1T6 EXOSC9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q06265 EXOSC9 "Exosome complex component RRP45" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPCC757.08 SPCC757.08 "exosome subunit Rrp45 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJI1 EXOSC9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00031795001
SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (431 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00026977001
SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_40, whole genome shot [...] (241 aa)
• ••••• 0.985
GSVIVG00023648001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (320 aa)
• ••••• 0.937
GSVIVG00016075001
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (237 aa)
• ••••• 0.925
GSVIVG00019329001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (943 aa)
   •••• 0.870
GSVIVG00024558001
SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (254 aa)
• • ••• 0.870
GSVIVG00026698001
SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (200 aa)
  ••••• 0.865
GSVIVG00032429001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (243 aa)
• • ••• 0.741
GSVIVG00032741001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (287 aa)
  • ••••0.703
GSVIVG00019030001
SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (103 aa)
•       0.657
GSVIVG00025599001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (134 aa)
  • ••  0.526

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
cd11368259 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryot 1e-140
COG2123272 COG2123, COG2123, RNase PH-related exoribonuclease 3e-84
PRK04282271 PRK04282, PRK04282, exosome complex RNA-binding pr 4e-80
cd11365256 cd11365, RNase_PH_archRRP42, RRP42 subunit of arch 8e-77
cd11369261 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryot 8e-58
cd11367272 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryot 8e-49
cd11358218 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucl 6e-43
pfam01138129 pfam01138, RNase_PH, 3' exoribonuclease family, do 2e-32
pfam0372568 pfam03725, RNase_PH_C, 3' exoribonuclease family, 3e-12
cd11370226 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryot 6e-07
COG0689230 COG0689, Rph, RNase PH [Translation, ribosomal str 1e-05
TIGR02065230 TIGR02065, ECX1, archaeal exosome-like complex exo 3e-04
PRK03983244 PRK03983, PRK03983, exosome complex exonuclease Rr 0.004
>gnl|CDD|206773 cd11368, RNase_PH_RRP45, RRP45 subunit of eukaryotic exosome Back     alignment and domain information 
 Score =  401 bits (1032), Expect = e-140
 Identities = 135/261 (51%), Positives = 191/261 (73%), Gaps = 3/261 (1%)

Query: 11  LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
           L+ NE+ FI  AL  G+R+DGR   E+R + I FG E G  EV LG+T ++  V+ ++V+
Sbjct: 1   LSNNEREFILKALKEGLRLDGRGLDEFRPIKITFGLEYGCVEVSLGKTRVLAQVSCEIVE 60

Query: 71  PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
           P  DRPNEG L I  E SPMA P+FE GRPSE  VEL R+++R LR+SRAVDTESLC++A
Sbjct: 61  PKPDRPNEGILFINVELSPMASPAFEPGRPSEEEVELSRLLERALRDSRAVDTESLCIIA 120

Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
           G+ VW+IR+D+H+L++ GNL+DAA++AA+A+L+ FRRP+ ++ GE   EV VH PEEREP
Sbjct: 121 GEKVWSIRVDVHVLNHDGNLIDAASLAAIAALMHFRRPDVTVDGE---EVTVHSPEEREP 177

Query: 191 LPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
           +PL IHH+PI VTF FF    ++V+DPT  EEAV  G +T  LN + ++CA+ K GG  +
Sbjct: 178 VPLSIHHIPICVTFAFFDDGEIVVVDPTLLEEAVADGSLTVALNKHREICALSKSGGAPL 237

Query: 251 LQSVIMQCLRLASRMASDITK 271
             S I++C+++A+  A ++T+
Sbjct: 238 SPSQILRCVKIAAAKAKELTE 258

The RRP45 subunit of eukaryotic exosome is a member of the RNase_PH family, named after the bacterial Ribonuclease PH, a 3'-5' exoribonuclease. Structurally all members of this family form hexameric rings (trimers of Rrp41-Rrp45, Rrp46-Rrp43, and Mtr3-Rrp42 dimers). The eukaryotic exosome core is composed of six individually encoded RNase PH-like subunits and three additional proteins (Rrp4, Csl4 and Rrp40) that form a stable cap and contain RNA-binding domains. The RNase PH-like subunits are no longer phosphorolytic enzymes, the exosome directly associates with Rrp44 and Rrp6, hydrolytic exoribonucleases related to bacterial RNase II/R and RNase D. The exosome plays an important role in RNA turnover. It plays a crucial role in the maturation of stable RNA species such as rRNA, snRNA and snoRNA, quality control of mRNA, and the degradation of RNA processing by-products and non-coding transcripts. Length = 259
>gnl|CDD|225034 COG2123, COG2123, RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235268 PRK04282, PRK04282, exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>gnl|CDD|206770 cd11365, RNase_PH_archRRP42, RRP42 subunit of archaeal exosome Back     alignment and domain information
>gnl|CDD|206774 cd11369, RNase_PH_RRP43, RRP43 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|206772 cd11367, RNase_PH_RRP42, RRP42 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|206766 cd11358, RNase_PH, RNase PH-like 3'-5' exoribonucleases Back     alignment and domain information
>gnl|CDD|216323 pfam01138, RNase_PH, 3' exoribonuclease family, domain 1 Back     alignment and domain information
>gnl|CDD|217696 pfam03725, RNase_PH_C, 3' exoribonuclease family, domain 2 Back     alignment and domain information
>gnl|CDD|206775 cd11370, RNase_PH_RRP41, RRP41 subunit of eukaryotic exosome Back     alignment and domain information
>gnl|CDD|223761 COG0689, Rph, RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|131120 TIGR02065, ECX1, archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>gnl|CDD|235187 PRK03983, PRK03983, exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 465
KOG1614291 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
COG2123272 RNase PH-related exoribonuclease [Translation, rib 100.0
PRK04282271 exosome complex RNA-binding protein Rrp42; Provisi 100.0
KOG1613298 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
PRK00173238 rph ribonuclease PH; Reviewed 100.0
PRK03983244 exosome complex exonuclease Rrp41; Provisional 100.0
TIGR01966236 RNasePH ribonuclease PH. This bacterial enzyme, ri 100.0
TIGR02065230 ECX1 archaeal exosome-like complex exonuclease 1. 100.0
KOG1612288 consensus Exosomal 3'-5' exoribonuclease complex, 100.0
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 100.0
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 100.0
COG0689230 Rph RNase PH [Translation, ribosomal structure and 99.97
PRK11824 693 polynucleotide phosphorylase/polyadenylase; Provis 99.97
TIGR03591 684 polynuc_phos polyribonucleotide nucleotidyltransfe 99.97
KOG1068245 consensus Exosomal 3'-5' exoribonuclease complex, 99.97
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 99.97
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.95
KOG1067 760 consensus Predicted RNA-binding polyribonucleotide 99.94
PLN00207 891 polyribonucleotide nucleotidyltransferase; Provisi 99.94
TIGR02696 719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 99.92
KOG1069217 consensus Exosomal 3'-5' exoribonuclease complex, 99.91
PF01138132 RNase_PH: 3' exoribonuclease family, domain 1 This 99.91
COG1185 692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.79
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 99.7
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 99.4
PF0372568 RNase_PH_C: 3' exoribonuclease family, domain 2 Th 99.26
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-63  Score=472.21  Aligned_cols=286  Identities=57%  Similarity=0.932  Sum_probs=278.7

Q ss_pred             cCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecCCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEE
Q 043337            6 ANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFT   85 (465)
Q Consensus         6 ~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~V   85 (465)
                      ++.|.+|.+|+.|+.++|+.|.|.|||++.|||.+.|++|+..||+.|++|+|+|||.|+.++.+|+.+||.+|.+.+.+
T Consensus         1 ~r~~~~t~~e~~fvl~alk~g~R~DgR~l~efR~lei~fGke~gs~~vt~G~Tkvm~~vt~~ia~Py~dRP~eG~~~I~t   80 (291)
T KOG1614|consen    1 ARMWELTVNESKFVLNALKAGLRFDGRSLEEFRDLEIEFGKEYGSVLVTMGNTKVMARVTAQIAQPYIDRPHEGSFSIFT   80 (291)
T ss_pred             CCccccccchHHHHHHHHHhcccccccchhhhhceEEEeccccccEEEEecCeeEEEEeehhhcCcccCCCCCCeeeeee
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhC
Q 043337           86 EFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTF  165 (465)
Q Consensus        86 d~sp~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da  165 (465)
                      +++|+|+++|++|+.++.+.+++|+|++++|.|++||+|+|||..|+.+|.|++|+++|+.|||++||+++|+.+||+++
T Consensus        81 elsPmA~~sfE~Gr~~~~~v~l~Rliek~~R~S~aiD~EsLCI~aG~kvW~IRiDlhiLd~DGnlvDaA~iAviaaL~hF  160 (291)
T KOG1614|consen   81 ELSPMASPSFEPGRKGESEVELSRLIEKALRRSKAIDTESLCIRAGEKVWLIRIDLHILDHDGNLVDAACIAVIAALMHF  160 (291)
T ss_pred             ccccccccccCCCCccchHHHHHHHHHHHHHhccccchHHHHhhhCCeEEEEEEEEEEEcCCCCeehhHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEECCccEEEEcCCHHHHHcCcceEEEEEcCCCCEEEEEcc
Q 043337          166 RRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKP  245 (465)
Q Consensus       166 ~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~~~~~iLvDPT~~EE~~s~~~LtVa~~~~g~I~~i~k~  245 (465)
                      +.|.+++.|   .+++||+.++++|+||+|+|+|+|+|||+|+.|..+|+|||..||.++++.++|++|++.+||.+++.
T Consensus       161 rrPdvTv~g---~ev~ihp~eEr~PvPL~I~HmPIC~tf~ffnkG~ivviDpt~~Ee~~~dGs~vVt~Nk~rEVc~i~k~  237 (291)
T KOG1614|consen  161 RRPDVTVGG---EEVIIHPVEEREPVPLSIHHMPICFTFGFFNKGEIVVIDPTEKEEAVMDGSMVVTMNKNREVCAIQKS  237 (291)
T ss_pred             CCCCccccc---ceeEecChhccCCcceeeeeccceEEEEEecCceEEEeCCcHHHHhccCceEEEEEcCCccEEEEecC
Confidence            999999864   68999999999999999999999999999998779999999999999999999999999999999999


Q ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhccCCC
Q 043337          246 GGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALRKIKRHPT  294 (465)
Q Consensus       246 Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~~~~k~~~~  294 (465)
                      |+..+++.++++|.++|...+.++...|.++|+++..+|..++.++++.
T Consensus       238 G~~~~~~~~i~~C~k~A~~~a~~vt~ii~e~l~~d~~~r~~~~~~~~~~  286 (291)
T KOG1614|consen  238 GGEILDESVIERCYKLAKDRAVEVTGIILEALEEDQRERSAQKVKTAGT  286 (291)
T ss_pred             CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence            9999999999999999999999999999999999999999999988765

>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional Back     alignment and domain information
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00173 rph ribonuclease PH; Reviewed Back     alignment and domain information
>PRK03983 exosome complex exonuclease Rrp41; Provisional Back     alignment and domain information
>TIGR01966 RNasePH ribonuclease PH Back     alignment and domain information
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1 Back     alignment and domain information
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2nn6_A358 Structure Of The Human Rna Exosome Composed Of Rrp4 4e-54
2wp8_A305 Yeast Rrp44 Nuclease Length = 305 2e-47
4ifd_A304 Crystal Structure Of An 11-subunit Eukaryotic Exoso 4e-47
2pnz_B277 Crystal Structure Of The P. Abyssi Exosome Rnase Ph 1e-37
2wnr_A271 The Structure Of Methanothermobacter Thermautotroph 6e-36
2br2_A275 Rnase Ph Core Of The Archaeal Exosome Length = 275 1e-35
2je6_A277 Structure Of A 9-Subunit Archaeal Exosome Length = 1e-35
3l7z_A271 Crystal Structure Of The S. Solfataricus Archaeal E 3e-35
2nn6_C278 Structure Of The Human Rna Exosome Composed Of Rrp4 2e-31
2ba0_I259 Archaeal Exosome Core Length = 259 1e-29
3m85_G259 Archaeoglobus Fulgidus Exosome Y70a With Rna Bound 2e-28
2nn6_E305 Structure Of The Human Rna Exosome Composed Of Rrp4 1e-20
>pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 358 Back     alignment and structure 
Iteration: 1

 Score =  208 bits (530), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/268 (41%), Positives = 171/268 (63%), Gaps = 3/268 (1%)
Query: 11  LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
           L+  E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV 
Sbjct: 23  LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 82
Query: 71  PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
           P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+A
Sbjct: 83  PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 142
Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHXXXXXXX 190
           G+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G+   EV ++       
Sbjct: 143 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 199
Query: 191 XXXIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANGDVCAIQKPGGEGV 250
               IHH+PI V+F FF   + L++DP   EE VM G +   +N + ++C IQ  GG  +
Sbjct: 200 VPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSSGGIML 259
Query: 251 LQSVIMQCLRLASRMASDITKKIKDAVE 278
           L+  +++C ++A    ++IT+ I  A+E
Sbjct: 260 LKDQVLRCSKIAGVKVAEITELILKALE 287
>pdb|2WP8|A Chain A, Yeast Rrp44 Nuclease Length = 305 Back     alignment and structure
>pdb|4IFD|A Chain A, Crystal Structure Of An 11-subunit Eukaryotic Exosome Complex Bound To Rna Length = 304 Back     alignment and structure
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring Complexed With Udp And Gmp Length = 277 Back     alignment and structure
>pdb|2WNR|A Chain A, The Structure Of Methanothermobacter Thermautotrophicus Exosome Core Assembly Length = 271 Back     alignment and structure
>pdb|2BR2|A Chain A, Rnase Ph Core Of The Archaeal Exosome Length = 275 Back     alignment and structure
>pdb|2JE6|A Chain A, Structure Of A 9-Subunit Archaeal Exosome Length = 277 Back     alignment and structure
>pdb|3L7Z|A Chain A, Crystal Structure Of The S. Solfataricus Archaeal Exosome Length = 271 Back     alignment and structure
>pdb|2NN6|C Chain C, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 278 Back     alignment and structure
>pdb|2BA0|I Chain I, Archaeal Exosome Core Length = 259 Back     alignment and structure
>pdb|3M85|G Chain G, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The Active Site Length = 259 Back     alignment and structure
>pdb|2NN6|E Chain E, Structure Of The Human Rna Exosome Composed Of Rrp41, Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40 Length = 305 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query465
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 1e-102
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 1e-102
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 1e-101
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 6e-99
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 8e-97
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 6e-90
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 7e-89
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 2e-88
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 9e-25
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 2e-21
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 2e-18
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 1e-14
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 1e-13
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 2e-13
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 2e-13
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 5e-10
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 1e-09
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 2e-09
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 3e-09
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 9e-09
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 4e-07
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 3e-06
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Length = 277 Back     alignment and structure
 Score =  307 bits (787), Expect = e-102
 Identities = 87/280 (31%), Positives = 147/280 (52%), Gaps = 10/280 (3%)

Query: 1   MDTRLANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFG---REDGSSEVQLGQ 57
           M +  +N   + + +K  I +    GIR DGR   +YR LSI      + DGS+ V+LG 
Sbjct: 3   MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT 62

Query: 58  THIMGFVTGQLVQPYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRE 117
           T ++     ++ +PY D PN+G L +  E  P+A  +FE G P E+A+EL R+VDR LR+
Sbjct: 63  TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD 122

Query: 118 SRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDD 177
           S+A+D   L +  GK VW + +D+++LD GGN++DA  +A++A+L   +  +        
Sbjct: 123 SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSN-- 180

Query: 178 LEVIVHPPEEREPLPLIIHHLPIAVTFGFFSSESLLVIDPTHHEEAVMVGKMTATLNANG 237
             + V+  E    LPL  ++  + ++         LV+DP   EE++M  K++ +   + 
Sbjct: 181 -GISVNKNEVVGKLPL--NYPVVTISVAKVDKY--LVVDPDLDEESIMDAKISFSYTPDL 235

Query: 238 DVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAV 277
            +  IQK G   +    I Q    A   A  + +++K  +
Sbjct: 236 KIVGIQKSGKGSMSLQDIDQAENTARSTAVKLLEELKKHL 275
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Length = 277 Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 271 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Length = 259 Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 278 Back     alignment and structure
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 305 Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 305 Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Length = 255 Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Length = 262 Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Length = 239 Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 237 Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Length = 222 Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 272 Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Length = 246 Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 240 Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Length = 255 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Length = 249 Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 249 Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Length = 250 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Length = 258 Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Length = 245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
2wp8_A305 Exosome complex component RRP45; nucleus, hydrolas 100.0
2nn6_A358 Polymyositis/scleroderma autoantigen 1; RNA, exoso 100.0
3m7n_G259 Probable exosome complex exonuclease 2; exosome, R 100.0
2po1_B277 Probable exosome complex exonuclease 2; RNAse PH, 100.0
2nn6_E305 Exosome complex exonuclease RRP42; RNA, exosome, P 100.0
2je6_A277 RRP42, exosome complex exonuclease 2; nuclease, hy 100.0
2nn6_C278 Exosome complex exonuclease RRP43; RNA, exosome, P 100.0
2wnr_A271 Probable exosome complex exonuclease 2; phosphate 100.0
2wnr_B240 Probable exosome complex exonuclease 1; phosphate 100.0
2nn6_B249 Exosome complex exonuclease RRP41; RNA, exosome, P 100.0
2po1_A249 Probable exosome complex exonuclease 1; RNAse PH, 100.0
2je6_B250 RRP41, exosome complex exonuclease 1; nuclease, hy 100.0
3b4t_A262 Ribonuclease PH; RNAse, tRNA nucleotidyltransferas 100.0
2wp8_B246 Exosome complex component SKI6; nucleus, hydrolase 100.0
3m7n_D258 Probable exosome complex exonuclease 1; exosome, R 100.0
3dd6_A255 Ribonuclease PH; exoribonuclease, tRNA maturation, 100.0
1r6l_A239 Ribonuclease PH; beta-alpha-beta-alpha fold, hexam 100.0
1oys_A245 Ribonuclease PH; transferase, tRNA processing; 2.4 100.0
1udn_A255 Ribonuclease PH, RNAse PH; transferase, riken stru 100.0
2nn6_F272 MTR3, exosome component 6; RNA, exosome, PM/SCL, p 100.0
2nn6_D237 Exosome complex exonuclease RRP46; RNA, exosome, P 100.0
3hkm_A246 OS03G0854200 protein; RNAse PH domain, phosphoryla 100.0
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 100.0
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 100.0
3gme_A549 Polyribonucleotide nucleotidyltransferase; protein 100.0
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 100.0
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 100.0
3u1k_A 630 Polyribonucleotide nucleotidyltransferase 1, MITO; 99.97
3krn_A222 Protein C14A4.5, confirmed by transcript evidence; 99.97
3cdi_A 723 Polynucleotide phosphorylase; mRNA turnover, RNAse 99.97
3gme_A 549 Polyribonucleotide nucleotidyltransferase; protein 99.96
4aid_A 726 Polyribonucleotide nucleotidyltransferase; transfe 99.96
1e3p_A 757 Guanosine pentaphosphate synthetase; polyribonucle 99.95
1whu_A104 Polynucleotide phosphorylase; 3'-5' RNA exonucleas 82.77
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=5.5e-56  Score=446.00  Aligned_cols=280  Identities=39%  Similarity=0.673  Sum_probs=237.4

Q ss_pred             ccCCCcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecCCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEE
Q 043337            5 LANTWRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIF   84 (465)
Q Consensus         5 m~~~~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~   84 (465)
                      |++++.+|..|+.|++++|++|+|+|||.++|+|+|.|++|.++|||+|++|+|+|+|+|++++..|..++|++|++.++
T Consensus         1 m~~~~~~s~~e~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~g~~~~~   80 (305)
T 2wp8_A            1 MAKDIEISASESKFILEALRQNYRLDGRSFDQFRDVEITFGKEFGDVSVKMGNTKVHCRISCQIAQPYEDRPFEGLFVIS   80 (305)
T ss_dssp             ------CCHHHHHHHHHHHTTTCCTTSCCTTCCCCEEEEECSSTTEEEEEETTEEEEEEEEEEEC-CCSSCTTCCEEEEE
T ss_pred             CCCccccCcCHHHHHHHHHhhCCCCCCCCCcccCCeEEEEcCCCcEEEEEECCeEEEEEEeccccCCcccCCCCcEEEEE
Confidence            77899999999999999999999999999999999999999999999999999999999999988888778999999999


Q ss_pred             EEeCCCCCCCccCCCCC-hhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHh
Q 043337           85 TEFSPMADPSFETGRPS-ESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLL  163 (465)
Q Consensus        85 Vd~sp~as~~~~~g~~s-e~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~  163 (465)
                      |+|+|++.+.|++|+++ +++++++++|+|+|+++.+||+++|||+|++++|+|+|+++||++|||++||+++|+++||+
T Consensus        81 ve~~~~~~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~  160 (305)
T 2wp8_A           81 TEISPMAGSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLM  160 (305)
T ss_dssp             ECCC----------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            99999999999888898 89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCcccCCCCCceeEeCCCCCCCCCccccccccEEEEEEEEC--------Cc----cEEEEcCCHHHHHcCcceEEE
Q 043337          164 TFRRPECSLGGEDDLEVIVHPPEEREPLPLIIHHLPIAVTFGFFS--------SE----SLLVIDPTHHEEAVMVGKMTA  231 (465)
Q Consensus       164 da~IP~v~~~~~dG~~v~i~~~~~~~~~pL~i~~lPiavT~gli~--------~~----~~iLvDPT~~EE~~s~~~LtV  231 (465)
                      ++++|.+.+.+   ..+.+++.+++++.||.|+++|++||||+++        ++    ..+|+|||.+||..+++.++|
T Consensus       161 ~a~iP~~~~~~---~~~~i~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~V  237 (305)
T 2wp8_A          161 HFKKPDITVHG---EQIIVHPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTV  237 (305)
T ss_dssp             HCEECCCBCTT---SSCCBCCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEE
T ss_pred             HhCCCeEEecC---CceEecccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEE
Confidence            99999988763   2478888888999999999999999999997        21    389999999999999999999


Q ss_pred             EEcCCCCEEEEEccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 043337          232 TLNANGDVCAIQKPGGEGVLQSVIMQCLRLASRMASDITKKIKDAVETYNTERALR  287 (465)
Q Consensus       232 a~~~~g~I~~i~k~Gg~~is~~~L~~~i~~A~~~a~~I~~~I~~~l~~~~~er~~~  287 (465)
                      +++.+|+||.+++.|+..++.++|.+|+++|.+++++|+++|+++++++..+|..+
T Consensus       238 a~~~~g~i~~l~~~g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~~  293 (305)
T 2wp8_A          238 TLNKNREVVQVSKAGGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNKY  293 (305)
T ss_dssp             EECTTSEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             EEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999977899999999999999999999999999999987777553
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G Back     alignment and structure
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B* Back     alignment and structure
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A Back     alignment and structure
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A* Back     alignment and structure
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B Back     alignment and structure
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E Back     alignment and structure
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis} Back     alignment and structure
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A Back     alignment and structure
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A Back     alignment and structure
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A Back     alignment and structure
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Back     alignment and structure
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 465
d2nn6a1184 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP 4e-51
d2nn6e1187 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP 1e-46
d2ba0g1176 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,E 4e-41
d2nn6c1181 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP 2e-40
d2je6a1191 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,E 2e-34
d2nn6a2118 d.101.1.1 (A:185-302) Exosome complex exonuclease 8e-26
d2nn6c289 d.101.1.1 (C:188-276) Exosome complex exonuclease 5e-21
d2ba0g279 d.101.1.1 (G:179-257) Exosome complex exonuclease 2e-19
d2nn6e294 d.101.1.1 (E:192-285) Exosome complex exonuclease 5e-18
d2ba0d1144 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, 2e-17
d2je6b1148 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, 4e-17
d1r6la1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseu 3e-15
d1oysa1151 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Baci 1e-13
d1udsa1149 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aqui 2e-13
d2nn6b1145 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP 2e-12
d2je6a284 d.101.1.1 (A:192-275) Exosome complex exonuclease 5e-12
d2nn6f1147 d.14.1.4 (F:29-175) Exosome complex exonuclease MT 4e-10
d1e3ha3137 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/ 9e-10
d2nn6d1122 d.14.1.4 (D:25-146) Exosome complex exonuclease RR 8e-09
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP45
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  169 bits (429), Expect = 4e-51
 Identities = 85/182 (46%), Positives = 127/182 (69%), Gaps = 3/182 (1%)

Query: 11  LTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQ 70
           L+  E+RF+  A+    R+DGR  ++YR + I FG + G   V+LG+T ++G V+ +LV 
Sbjct: 6   LSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVS 65

Query: 71  PYRDRPNEGTLSIFTEFSPMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLA 130
           P  +R  EG L    E S MA P+FE GR S+  V+L R+++R LR S+ +DTESLCV+A
Sbjct: 66  PKLNRATEGILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVA 125

Query: 131 GKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRPECSLGGEDDLEVIVHPPEEREP 190
           G+ VW IR+DLH+L++ GN++DAA+IAA+ +L  FRRP+ S+ G+   EV ++ PEER+P
Sbjct: 126 GEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGD---EVTLYTPEERDP 182

Query: 191 LP 192
           +P
Sbjct: 183 VP 184
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 187 Back     information, alignment and structure
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 176 Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 191 Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Length = 89 Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 79 Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 144 Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 148 Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 151 Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Length = 151 Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Length = 149 Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Length = 145 Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Length = 84 Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 147 Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Length = 137 Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query465
d2nn6a1184 Exosome complex exonuclease RRP45 {Human (Homo sap 100.0
d2ba0g1176 Exosome complex exonuclease 2,ECX2 {Archaeoglobus 100.0
d2nn6e1187 Exosome complex exonuclease RRP42 {Human (Homo sap 100.0
d2nn6c1181 Exosome complex exonuclease RRP43 {Human (Homo sap 100.0
d2je6a1191 Exosome complex exonuclease 2,ECX2 {Sulfolobus sol 100.0
d2ba0d1144 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 99.96
d2je6b1148 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.95
d2nn6b1145 Exosome complex exonuclease RRP41 {Human (Homo sap 99.95
d1udsa1149 Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId 99.94
d1r6la1151 Ribonuclease PH, domain 1 {Pseudomonas aeruginosa 99.93
d1oysa1151 Ribonuclease PH, domain 1 {Bacillus subtilis [TaxI 99.93
d2nn6f1147 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.88
d1e3ha3137 Polynucleotide phosphorylase/guanosine pentaphosph 99.86
d2nn6d1122 Exosome complex exonuclease RRP46 {Human (Homo sap 99.83
d2nn6a2118 Exosome complex exonuclease RRP45 {Human (Homo sap 99.78
d1e3ha2149 Polynucleotide phosphorylase/guanosine pentaphosph 99.74
d2nn6e294 Exosome complex exonuclease RRP42 {Human (Homo sap 99.72
d2nn6c289 Exosome complex exonuclease RRP43 {Human (Homo sap 99.7
d2je6a284 Exosome complex exonuclease 2, ECX2 {Sulfolobus so 99.67
d2ba0g279 Exosome complex exonuclease 2, ECX2 {Archaeoglobus 99.62
d2nn6b290 Exosome complex exonuclease RRP41 {Human (Homo sap 99.35
d2nn6d289 Exosome complex exonuclease RRP46 {Human (Homo sap 99.33
d2je6b286 Exosome complex exonuclease 1, ECX1 {Sulfolobus so 99.28
d1r6la288 Ribonuclease PH, domain 2 {Pseudomonas aeruginosa 99.24
d2nn6f295 Exosome complex exonuclease MTR3 {Human (Homo sapi 99.02
d1oysa286 Ribonuclease PH, domain 2 {Bacillus subtilis [TaxI 99.02
d1udsa2105 Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId 98.99
d2ba0d299 Exosome complex exonuclease 1, ECX1 {Archaeoglobus 98.97
d1e3ha5111 Polynucleotide phosphorylase/guanosine pentaphosph 98.39
d1e3ha696 Polynucleotide phosphorylase/guanosine pentaphosph 95.05
>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Ribonuclease PH domain 1-like
domain: Exosome complex exonuclease RRP45
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-40  Score=306.68  Aligned_cols=181  Identities=47%  Similarity=0.842  Sum_probs=168.0

Q ss_pred             CcCCccHHHHHHHHHhcCCCCCCCCCCCCcceEEEecCCCceEEEEeCCeEEEEEEEeecccCCCCCCCcceEEEEEEeC
Q 043337            9 WRLTVNEKRFIETALSSGIRIDGRNPFEYRKLSIKFGREDGSSEVQLGQTHIMGFVTGQLVQPYRDRPNEGTLSIFTEFS   88 (465)
Q Consensus         9 ~~lS~~e~~fi~~~L~~giR~DGR~~~e~R~I~I~~G~AdGSA~V~~G~T~Vi~~V~~ei~~P~~~rp~eG~L~v~Vd~s   88 (465)
                      ..||.+|++|+.++|++|+|+|||+++|+|++.|++|.++|||+|++|+|+|+|+|++++..|...+|++|.+.++|+++
T Consensus         4 ~~lS~~e~~fi~~~l~~~~R~DGR~~~e~R~~~i~~g~a~GSa~v~~G~T~V~~~V~~~~~~p~~~~~~~g~~~~~v~~~   83 (184)
T d2nn6a1           4 TPLSNCERRFLLRAIEEKKRLDGRQTYDYRNIRISFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEGILFFNLELS   83 (184)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCTTSCCTTCCCCCEEEECSSTTEEEEESSSCEEEEEECCEEECCCSTTTTSCCEEEEEEEC
T ss_pred             cCCCHHHHHHHHHHHhhCcCCCCCCCCCcCCeEEEecCCCCEEEEEeCCCEEEEEEEeccccccccCCCccceeEEEEec
Confidence            45999999999999999999999999999999999999999999999999999999999988998999999999999999


Q ss_pred             CCCCCCccCCCCChhHHHHHHHHHhhhccccccccccceeecCceeEEEEEEEEEEcCCCCHHHHHHHHHHHHHhhCCCC
Q 043337           89 PMADPSFETGRPSESAVELGRIVDRGLRESRAVDTESLCVLAGKLVWAIRIDLHILDNGGNLVDAANIAALASLLTFRRP  168 (465)
Q Consensus        89 p~as~~~~~g~~se~e~~lsrlL~r~Lr~s~~idlesLcI~pg~~~w~I~IdV~VL~~DGnllDaa~~Aa~aAL~da~IP  168 (465)
                      +++.+.+..+.+++.+..++++|++.++.+.++|+++|||++++++|.|+|+|+||++|||++||+++|+++||+|++||
T Consensus        84 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~~L~i~~~~~~w~i~i~v~VL~~DG~~~da~~~a~~~AL~~~~iP  163 (184)
T d2nn6a1          84 QMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRP  163 (184)
T ss_dssp             TTTCSSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCC
T ss_pred             cccCcccccCCCCchhHHHHHHHHhhhhhhhhhhhhhhccccccCcEEEEEEEEEECCCCCHHHHHHHHHHHHHHhhCCC
Confidence            99998888888888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCceeEeCCCCCCCCCc
Q 043337          169 ECSLGGEDDLEVIVHPPEEREPLP  192 (465)
Q Consensus       169 ~v~~~~~dG~~v~i~~~~~~~~~p  192 (465)
                      .+.+.++   .+.++.+++++|+|
T Consensus       164 ~v~v~~~---~~~~~~~~e~epvp  184 (184)
T d2nn6a1         164 DVSVQGD---EVTLYTPEERDPVP  184 (184)
T ss_dssp             CCBCCTT---CCBCCHHHHTSCCC
T ss_pred             eEEEeCC---ceEEcCCccccCCC
Confidence            9888643   34555556666654
>d2ba0g1 d.14.1.4 (G:3-178) Exosome complex exonuclease 2,ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c1 d.14.1.4 (C:7-187) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a1 d.14.1.4 (A:1-191) Exosome complex exonuclease 2,ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ba0d1 d.14.1.4 (D:10-153) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2je6b1 d.14.1.4 (B:8-155) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2nn6b1 d.14.1.4 (B:6-150) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1r6la1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1oysa1 d.14.1.4 (A:1-151) Ribonuclease PH, domain 1 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2nn6f1 d.14.1.4 (F:29-175) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha3 d.14.1.4 (A:346-482) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6d1 d.14.1.4 (D:25-146) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6a2 d.101.1.1 (A:185-302) Exosome complex exonuclease RRP45 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3ha2 d.14.1.4 (A:3-151) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6c2 d.101.1.1 (C:188-276) Exosome complex exonuclease RRP43 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6a2 d.101.1.1 (A:192-275) Exosome complex exonuclease 2, ECX2 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ba0g2 d.101.1.1 (G:179-257) Exosome complex exonuclease 2, ECX2 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2nn6b2 d.101.1.1 (B:151-240) Exosome complex exonuclease RRP41 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nn6d2 d.101.1.1 (D:147-235) Exosome complex exonuclease RRP46 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6b2 d.101.1.1 (B:156-241) Exosome complex exonuclease 1, ECX1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1r6la2 d.101.1.1 (A:152-239) Ribonuclease PH, domain 2 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2nn6f2 d.101.1.1 (F:176-270) Exosome complex exonuclease MTR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oysa2 d.101.1.1 (A:152-237) Ribonuclease PH, domain 2 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1udsa2 d.101.1.1 (A:151-255) Ribonuclease PH, domain 2 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2ba0d2 d.101.1.1 (D:154-252) Exosome complex exonuclease 1, ECX1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha6 d.101.1.1 (A:483-578) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure