Citrus Sinensis ID: 043344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190----
Protein Sequence
HAAHHSRPFIPSSPSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEPDFATVVASQRFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMARRR
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHEcccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
haahhsrpfipsspsssifirnfnslydydstsnsklpsarthssstlssepdsesepdfaTVVASQRffftspgrsnsivestpsvatttessdtvspmnnhqsgsstscvrdsvavptdspdpyvDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVslmsppdadmarrr
Flexible Loop (DISEMBL)
haahhsrpfipsspsssIFIRNFNSLYDYDSTSNSKLPSARTHSsstlssepdsesEPDFATVVASQRFfftspgrsnsivestpsvatttessdtvspmnnhqsgsstscvrdsvavptdspdpyVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSlmsppdadmarrr
Low Complexity Region (SEG)
HAAHHsrpfipsspsssifirnfnsLYDYDSTSNSKLPSARTHssstlssepdsesepdFATVVASQRFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDClhelllcylalNPKTTHKFIISAFADLLVSLMSPPDADMARRR
Disordered region (IsUnstruct)
*****************IFIRNFNSLYD**********************************VVASQRFFF***************************************************************EMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSL************
Disordered Region (DISOPRED)
*****************IFIRNFNSLYDY*************************************************************************************SVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVS*************
Disordered Region (DISEMBL)
***********SSPSSSIFIRNFNSLYDYDS****************************FATVVASQRFFFTSPGR****************************************AVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMARRR
Disordered Region (DISPRO)
**************SSSIF******L*******************************PDFATVVASQ*FFFT***************************************VRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
HAAHHSRPFIPSSPSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEPDFATVVASQRFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMARRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
224085487	246	predicted protein [Populus trichocarpa]	0.907	0.715	0.547	7e-45
34015078	615	ethylene receptor [Litchi chinensis]	0.793	0.250	0.635	1e-44
255559394	211	conserved hypothetical protein [Ricinus	0.659	0.606	0.635	1e-43
224062454	256	predicted protein [Populus trichocarpa]	0.938	0.710	0.515	4e-42
225432682	223	PREDICTED: uncharacterized protein LOC10	0.809	0.704	0.573	1e-40
147772925	428	hypothetical protein VITISV_037456 [Viti	0.804	0.364	0.571	2e-40
357440711	237	Ethylene receptor [Medicago truncatula]	0.860	0.704	0.547	2e-39
224102069	211	predicted protein [Populus trichocarpa]	0.829	0.763	0.524	1e-36
224108035	218	predicted protein [Populus trichocarpa]	0.829	0.738	0.497	2e-35
255552171	230	conserved hypothetical protein [Ricinus	0.798	0.673	0.526	2e-33

>gi|224085487|ref|XP_002307592.1| predicted protein [Populus trichocarpa] gi|222857041|gb|EEE94588.1| predicted protein [Populus trichocarpa]

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/210 (54%), Positives = 138/210 (65%), Gaps = 34/210 (16%)

Query: 9   FIPSSPSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEPDFATVVASQR 68
             P   S +  I+N+NSLYD         P+  + SSST SS   S SEPDFATV ASQR
Sbjct: 31  LTPDDHSHTFLIKNYNSLYD---------PTIDSASSSTSSSS-SSSSEPDFATVCASQR 80

Query: 69  FFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSST-----------SC------ 111
           FFF+SPGRSNSI+ESTPS+ T+++SSD +    +  +G +T           SC      
Sbjct: 81  FFFSSPGRSNSIIESTPSIVTSSDSSDNLVAPQSDSNGLTTNPSNDKSLLVDSCNNSTHP 140

Query: 112 -------VRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNP 164
                  V+DSVAVPT SPDPY+DFRRSMQEMVEARDL DV ANW+ LHELL CYL LNP
Sbjct: 141 QLLKSPTVKDSVAVPTYSPDPYMDFRRSMQEMVEARDLVDVNANWEYLHELLSCYLDLNP 200

Query: 165 KTTHKFIISAFADLLVSLMSPPDADMARRR 194
           K++HKFI+ AFADLLVSL+S    + A RR
Sbjct: 201 KSSHKFIVGAFADLLVSLLSSQMPEDAGRR 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|34015078|gb|AAQ56281.1| ethylene receptor [Litchi chinensis]

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 126/173 (72%), Gaps = 19/173 (10%)

Query: 13  SPSSSIFIRNFNSLYDYDSTSN----SKLPSARTHSSSTLSSEPDSESEPDFATVVASQR 68
           S S SI I+NFNSLYDY++++     SK       SSSTLS EPDS+SEPDFATVVASQR
Sbjct: 68  STSESILIKNFNSLYDYNNSTTFDPTSKSLILTQSSSSTLSYEPDSDSEPDFATVVASQR 127

Query: 69  FFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTS--------------CVRD 114
           FFFTSPG SNSI+ES+PS+AT  ESSDT   M +H    S +               V+D
Sbjct: 128 FFFTSPGSSNSIIESSPSIATL-ESSDTSVSMISHGVNQSLNNFSDRSLLKSWKSPSVKD 186

Query: 115 SVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTT 167
           SVAVPT SPDPY+DFR+SMQEMVEARDL DV++N D LHELLLCYLALNPKTT
Sbjct: 187 SVAVPTYSPDPYLDFRQSMQEMVEARDLVDVRSNLDYLHELLLCYLALNPKTT 239

Source: Litchi chinensis

Species: Litchi chinensis

Genus: Litchi

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559394|ref|XP_002520717.1| conserved hypothetical protein [Ricinus communis] gi|223540102|gb|EEF41679.1| conserved hypothetical protein [Ricinus communis]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 113/148 (76%), Gaps = 20/148 (13%)

Query: 59  DFATVVASQRFFFTSPGRSNSIVESTPSVATTTESSDTV----------SPMNN----HQ 104
           DFATV ASQRFFF+SPG SNSI+ESTPS+ T TESS+++          +P+++    +Q
Sbjct: 55  DFATVFASQRFFFSSPGHSNSIIESTPSIVTPTESSNSLVSLKCNATAATPLSDSSTTNQ 114

Query: 105 SGSST------SCVRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLC 158
           S  S+        ++DSVAVPT SPDPY+DFRRSMQEMVEARD  DVK NWD LHELLLC
Sbjct: 115 SNRSSLESLTPPTIKDSVAVPTYSPDPYLDFRRSMQEMVEARDFVDVKENWDYLHELLLC 174

Query: 159 YLALNPKTTHKFIISAFADLLVSLMSPP 186
           YLALNPK+THKFI+ AFADLLVSL++ P
Sbjct: 175 YLALNPKSTHKFIVRAFADLLVSLLASP 202

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062454|ref|XP_002300836.1| predicted protein [Populus trichocarpa] gi|222842562|gb|EEE80109.1| predicted protein [Populus trichocarpa]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 135/219 (61%), Gaps = 37/219 (16%)

Query: 6   SRPFIPSSPSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEPDFATVVA 65
           S P  P   S     +N+NSLYD+   S S   S    SSS+        SEPDFA+V A
Sbjct: 29  SNPLTPDDHSHPFLFKNYNSLYDHTIDSASASTSTSISSSSS-------SSEPDFASVYA 81

Query: 66  SQRFFFTSPGRSNSIVESTPSVATTTESSDT-VSP-------MNNHQSGSST---SC--- 111
           SQRFFF+SPG SNSI+ESTPS+ T+TESSD  V+P       + NH +G S     C   
Sbjct: 82  SQRFFFSSPGSSNSIIESTPSIVTSTESSDNLVAPQPDSNGLIINHSTGKSLLLDGCNNS 141

Query: 112 ----------------VRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHEL 155
                           V+DS+AV T S DPY+DFRRSMQEMV+ARDL DVKANW+ LHEL
Sbjct: 142 HPLHDQQPPQLLKSPTVKDSMAVSTYSHDPYMDFRRSMQEMVDARDLVDVKANWEYLHEL 201

Query: 156 LLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMARRR 194
           L  YL+LNPK+THKFI+ AFADLLVSL+S    +   RR
Sbjct: 202 LSSYLSLNPKSTHKFIVGAFADLLVSLLSTEMTEDGGRR 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432682|ref|XP_002278578.1| PREDICTED: uncharacterized protein LOC100261343 [Vitis vinifera]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/176 (57%), Positives = 111/176 (63%), Gaps = 19/176 (10%)

Query: 18  IFIRNFNSLYDYDSTSNSK-LPSARTHSSSTLSSEPDSESEPDFATVVASQRFFFTSPGR 76
           + I+NFNSLYD  S S SK L        ST     DSES PDFATV ASQRFFF+SPGR
Sbjct: 51  VLIKNFNSLYDLTSDSTSKSLTRTTDDFLSTSEDSVDSESPPDFATVFASQRFFFSSPGR 110

Query: 77  SNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEM 136
           SNSI E++ S                     S S V   VAV T SP+PY DFRRSMQEM
Sbjct: 111 SNSIFEASESPP------------------ESDSIVNGGVAVHTYSPNPYEDFRRSMQEM 152

Query: 137 VEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMAR 192
            EAR+L DV A+WD LHELLLCYL LNPK THKFII AFADL+V LMS   +D  R
Sbjct: 153 AEARELRDVAADWDYLHELLLCYLTLNPKHTHKFIIRAFADLIVCLMSSTASDGRR 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772925|emb|CAN67178.1| hypothetical protein VITISV_037456 [Vitis vinifera]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 110/175 (62%), Gaps = 19/175 (10%)

Query: 19  FIRNFNSLYDYDSTSNSK-LPSARTHSSSTLSSEPDSESEPDFATVVASQRFFFTSPGRS 77
            I+NFNSLYD  S S SK L        ST     DSES PDFATV ASQRFFF+SPGRS
Sbjct: 52  LIKNFNSLYDLTSDSTSKSLTRTTDDFLSTSEDSVDSESPPDFATVFASQRFFFSSPGRS 111

Query: 78  NSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEMV 137
           NSI E++ S                     S + V   VAV T SP+PY DFRRSMQEM 
Sbjct: 112 NSIFEASESPP------------------ESDAIVNGGVAVHTYSPNPYEDFRRSMQEMA 153

Query: 138 EARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMAR 192
           EAR+L DV A+WD LHELLLCYL LNPK THKFII AFADL+V LMS   +D  R
Sbjct: 154 EARELRDVAADWDYLHELLLCYLTLNPKHTHKFIIRAFADLIVCLMSSTASDGRR 208

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440711|ref|XP_003590633.1| Ethylene receptor [Medicago truncatula] gi|355479681|gb|AES60884.1| Ethylene receptor [Medicago truncatula]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 117/179 (65%), Gaps = 12/179 (6%)

Query: 18  IFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESEP-----DFATVVASQRFFFT 72
           I I+NFNSLYD   TS+  L S+   ++ T S+  D E EP     DFA   ASQRFFF+
Sbjct: 58  IMIKNFNSLYDPSLTSDHTLCSSSLSTTFTTSTSFDLEIEPEPEPADFAAAFASQRFFFS 117

Query: 73  SPGRSNSIVESTP------SVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPY 126
           SPG SNS++E T       S     + S++       +          SVAVPT SPDPY
Sbjct: 118 SPGSSNSLIEYTNTDCIQHSSVPLMDKSNSTKREKKQEKEKEEVLFNGSVAVPTYSPDPY 177

Query: 127 VDFRRSMQEMVEAR-DLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMS 184
           +DFRRSMQEMVEAR +L DVK+NW+ LHELLLCYLALNPK THKFI+ AFADLLV+LMS
Sbjct: 178 MDFRRSMQEMVEARPELMDVKSNWNILHELLLCYLALNPKNTHKFILGAFADLLVTLMS 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102069|ref|XP_002312533.1| predicted protein [Populus trichocarpa] gi|222852353|gb|EEE89900.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/183 (52%), Positives = 118/183 (64%), Gaps = 22/183 (12%)

Query: 13  SPSSSIFIRNFNSLYDYDSTSNSK-LPSARTHSSSTLSSEPDSESEPDFATVVASQRFFF 71
           SP++SI I+NFNS YD  S   SK L +  T+S S+  S+ D+ES  DFAT++ASQR FF
Sbjct: 43  SPTTSIIIQNFNSPYDLSSAPTSKSLSTPSTNSFSSSYSDSDTESNLDFATILASQRLFF 102

Query: 72  TSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRR 131
           +SPGRSNSI+ES P   T                      V   VA+   SPDPY DF+ 
Sbjct: 103 SSPGRSNSIIESLPEPQTP---------------------VSGGVAIKKYSPDPYTDFKH 141

Query: 132 SMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMSPPDADMA 191
           SMQEM+EAR+L DV+A WD LHELL CYL LNPK THKFIISAFAD++V L+S P  +  
Sbjct: 142 SMQEMIEARELRDVRAKWDYLHELLSCYLKLNPKHTHKFIISAFADIVVCLLSSPSQESD 201

Query: 192 RRR 194
            +R
Sbjct: 202 TQR 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108035|ref|XP_002314697.1| predicted protein [Populus trichocarpa] gi|222863737|gb|EEF00868.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 118/187 (63%), Gaps = 26/187 (13%)

Query: 5   HSRPFIPSS----PSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESE-PD 59
           HS P + S+    P++S+ I+NFNSLYD  S S SK  S  + +SS+ S         PD
Sbjct: 30  HSDPLLSSATAAAPTTSVMIKNFNSLYDLSSASTSKSLSTPSTNSSSSSYSDPDTDSTPD 89

Query: 60  FATVVASQRFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVP 119
           FAT++ASQRFF +SPGRSNSI+ES   + T                      V   VA+ 
Sbjct: 90  FATIIASQRFFSSSPGRSNSIIESMQELHTP---------------------VSGGVAIK 128

Query: 120 TDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLL 179
             S DPY+DF+ SMQEM+EAR++ DV+ANWD LHEL+ CYL LNPK THKFIISAFAD++
Sbjct: 129 KYSLDPYIDFKNSMQEMIEAREIRDVRANWDYLHELISCYLKLNPKNTHKFIISAFADII 188

Query: 180 VSLMSPP 186
           V L+S P
Sbjct: 189 VCLLSSP 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552171|ref|XP_002517130.1| conserved hypothetical protein [Ricinus communis] gi|223543765|gb|EEF45293.1| conserved hypothetical protein [Ricinus communis]

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 111/173 (64%), Gaps = 18/173 (10%)

Query: 13  SPSSSIFIRNFNSLYDYDSTSNSKLPSARTHSSSTLSSEPDSESE-PDFATVVASQRFFF 71
           S ++SI I+N NSLYD  S S SK  S  +  S + SS        PDFA + ASQRFFF
Sbjct: 48  SSTASIMIKNVNSLYDLSSASTSKSLSTPSTYSFSSSSSGSDVDSPPDFAAIFASQRFFF 107

Query: 72  TSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRR 131
           +SPGRSNSI+ES       T S++  +P+N              VAV   SPDPY DFR+
Sbjct: 108 SSPGRSNSIIESP-----ETPSAEPQTPLNG------------GVAVKKYSPDPYADFRQ 150

Query: 132 SMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMS 184
           SM EM+EAR   DVKA+WD LHELL CYL LNPK THKFIISAFAD+++ L++
Sbjct: 151 SMLEMIEARKPRDVKADWDYLHELLSCYLNLNPKQTHKFIISAFADIVICLLT 203

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	194
TAIR|locus:2045472	244	OFP16 "ovate family protein 16	0.793	0.631	0.337	6e-16
TAIR|locus:2201011	226	OFP12 "ovate family protein 12	0.567	0.486	0.430	4.2e-15
TAIR|locus:2130399	182	OFP11 "AT4G14860" [Arabidopsis	0.335	0.357	0.560	1.9e-12
TAIR|locus:2175453	260	OFP13 "ovate family protein 13	0.582	0.434	0.363	2.4e-11
TAIR|locus:2039290	261	OFP15 "ovate family protein 15	0.304	0.226	0.435	2.5e-11
TAIR|locus:2016344	294	OFP14 "ovate family protein 14	0.505	0.333	0.345	4.3e-09
TAIR|locus:2079969	282	OFP18 "ovate family protein 18	0.350	0.241	0.352	5.8e-09
TAIR|locus:4515102951	183	AT2G36026 "AT2G36026" [Arabido	0.520	0.551	0.289	2.9e-06
TAIR|locus:2183209	221	OFP8 "ovate family protein 8"	0.463	0.407	0.347	3e-05

TAIR|locus:2045472 OFP16 "ovate family protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 59/175 (33%), Positives = 86/175 (49%)

Query:    28 DYDSTSNSKLPSARTHXXXXXXXXXXXXXXXXFATVVASQRFFFTSPGRSNSIVEST-PS 86
             D  S+S +  P+A +                  +   AS+RFFF+SPGRSN+I +S  P 
Sbjct:    67 DLPSSSTTTTPAATS---SSSTSSYESDISPDVSAAFASRRFFFSSPGRSNAITDSPEPR 123

Query:    87 VATTTESSD--TVSPM--------NNHQSGSSTSCVRDSVAVP--TDSPDPYVDFRRSMQ 134
                 +++ D  T++          +N  + ++T  +    AV    DSPDP  DFRRSMQ
Sbjct:   124 SREFSDNYDDATITSTKKKKKKVYDNSVTTTTTRLISGGTAVTQHVDSPDPLTDFRRSMQ 183

Query:   135 EMVEAR----DLF-DVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLVSLMS 184
             EM++A     +L  D    +D            NP  THKF+I AF+D+LVSL+S
Sbjct:   184 EMIDAAIDAGELSRDPNDGYDFLDELLLTYLSLNPADTHKFVIRAFSDILVSLLS 238

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2201011 OFP12 "ovate family protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 53/123 (43%), Positives = 74/123 (60%)

Query:    63 VVASQRFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDS 122
             V+AS+RFFF+SPG SNSI +S P +    ++ DT + +    +G +   V+  V     S
Sbjct:   110 VLASRRFFFSSPGCSNSITDS-PDLRCR-DNYDTATRL---LTGGTA--VKHYV----QS 158

Query:   123 PDPYVDFRRSMQEMVEA-RDLFDVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLVS 181
             PDPY DFRRSMQEM++A  +  D++  ++            N   THKFII AFAD+LVS
Sbjct:   159 PDPYNDFRRSMQEMIDAVTNAGDLR-RYEFLHELLLSYLSLNAADTHKFIIRAFADILVS 217

Query:   182 LMS 184
             L+S
Sbjct:   218 LLS 220

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2130399 OFP11 "AT4G14860" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 37/66 (56%), Positives = 45/66 (68%)

Query:   121 DSPDPYVDFRRSMQEMVEARDLF-DVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLL 179
             +SPDPY DF RSM+EMVEARDL  DV A+ +            NPK TH+FI+SAFAD L
Sbjct:   108 ESPDPYRDFGRSMREMVEARDLTRDVVADREYLHELLFCYLYLNPKHTHRFIVSAFADTL 167

Query:   180 VSLMSP 185
             + L+SP
Sbjct:   168 LWLLSP 173

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2175453 OFP13 "ovate family protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 44/121 (36%), Positives = 64/121 (52%)

Query:    63 VVASQRFFFTSPGRSNSIVESTPSVATTT-ESSDTVSPMNNHQSGSSTSCVRDSVAVPTD 121
             VV S+R FF  PG ++SI+E     + +  +S +TV+   +     ST     SVAV  +
Sbjct:    99 VVRSERLFF-DPGVTSSILEEIEEKSKSDLKSKETVAVGEDR----STPIEEISVAVAME 153

Query:   122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLVS 181
             S DPY DFRRSM+EMV +    ++  +W+            N + +H  I+SAF DLL  
Sbjct:   154 SEDPYGDFRRSMEEMVTSHG--ELAKDWESLESMLAWYLRMNGRKSHGVIVSAFVDLLSG 211

Query:   182 L 182
             L
Sbjct:   212 L 212

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2039290 OFP15 "ovate family protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 27/62 (43%), Positives = 37/62 (59%)

Query:   121 DSPDPYVDFRRSMQEMVEARDLFDVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLV 180
             +S DPY DF+RSM+EMVEA  L     +W             N KT+H++I +AF DLL+
Sbjct:   115 ESDDPYSDFKRSMEEMVEAHALHH---DWKSLEKLLLQFLKVNAKTSHRYIFAAFVDLLM 171

Query:   181 SL 182
             +L
Sbjct:   172 NL 173

GO:0009507 "chloroplast" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

TAIR|locus:2016344 OFP14 "ovate family protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 38/110 (34%), Positives = 59/110 (53%)

Query:    74 PGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSM 133
             PG S    E  PS+ TT+ SS+        QS S+     + +AV   + +P  DFR+SM
Sbjct:   162 PGSS----EGRPSMETTSTSSE-------RQSRSTLVLPENCIAVLRYTDEPQEDFRQSM 210

Query:   134 QEMVEAR-DLFDVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLVSL 182
              EM+E++  + + + +WD            N K +HKFI+SAF DL+++L
Sbjct:   211 VEMMESKLGMRESEVDWDLMEELLFCYLDLNDKKSHKFILSAFVDLIIAL 260

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2079969 OFP18 "ovate family protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
 Identities = 25/71 (35%), Positives = 38/71 (53%)

Query:   121 DSPDPYVDFRRSMQEMVEARDLFDVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADLLV 180
             +S DPY DF+ SM++MVE   L     +W             N K +H++I +AF DL++
Sbjct:   142 ESNDPYTDFKNSMEKMVEVHVLHH---DWISLEKLLFWFLKVNVKASHRYIFAAFVDLVL 198

Query:   181 SLMSPPDADMA 191
             +L   P  D+A
Sbjct:   199 NLAVGPSKDVA 209

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:4515102951 AT2G36026 "AT2G36026" [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 33/114 (28%), Positives = 58/114 (50%)

Query:    68 RFFFTSPGRSNSIVESTPSVATTTESSDTVSPMNNHQSGSSTSCVRDSVAVPTDSPDPYV 127
             R + ++ G  +S   STP+ A+++ +  + S   +  S SS +    +VAV  DS DPY+
Sbjct:    43 RLYSSNYGHCHS---STPTTASSSSAVPSTSHWFSDTSSSSATPSAAAVAVEKDSDDPYL 99

Query:   128 DFRRSMQEMVEARDLF---DVKANWDCXXXXXXXXXXXNPKTTHKFIISAFADL 178
             DFR+SM +M+   +++   D++    C           N    H  II AF+++
Sbjct:   100 DFRQSMLQMILENEIYSKNDLRELLHCFLSL-------NEPYHHGIIIRAFSEI 146

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2183209 OFP8 "ovate family protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 33/95 (34%), Positives = 44/95 (46%)

Query:    92 ESSDTVSP-MNNHQSGSSTSCVRDSVAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWD 150
             ES D  S  + + +S SS S   +S AV   S DPY DFR SM EM+  R +F   A   
Sbjct:   131 ESEDDDSDTLFSSRSFSSDSSKAESFAVVKKSKDPYEDFRTSMVEMIVERQIF-APAELQ 189

Query:   151 CXXXXXXXXXXXNPKTTHKFIISAFADLLVSLMSP 185
                         N +  HK I+  F ++  +L SP
Sbjct:   190 ---QLLQCFLSLNSRQHHKVIVQVFLEIYATLFSP 221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.124   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      194       147   0.00091  103 3  11 22  0.47    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  566 (60 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.92u 0.13s 18.05t   Elapsed:  00:00:01
  Total cpu time:  17.92u 0.13s 18.05t   Elapsed:  00:00:01
  Start:  Mon May 20 22:40:13 2013   End:  Mon May 20 22:40:14 2013

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	194
TIGR01568	66	TIGR01568, A_thal_3678, uncharacterized plant-spec	9e-29
pfam04844	60	pfam04844, Ovate, Transcriptional repressor, ovate	5e-27

>gnl|CDD|130631 TIGR01568, A_thal_3678, uncharacterized plant-specific domain TIGR01568

 Score =  101 bits (254), Expect = 9e-29
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 3/69 (4%)

Query: 116 VAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAF 175
           VAV  +S DPY DFRRSM+EM+E R+L    A+W  L ELL CYL LNPK +H+FI+ AF
Sbjct: 1   VAVAKESDDPYEDFRRSMEEMIEERELE---ADWKELEELLACYLDLNPKKSHRFIVRAF 57

Query: 176 ADLLVSLMS 184
            D+L +L+S
Sbjct: 58  VDILSALLS 66

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence. Length = 66

>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate

 Score = 96.9 bits (242), Expect = 5e-27
 Identities = 34/64 (53%), Positives = 43/64 (67%), Gaps = 4/64 (6%)

Query: 122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVS 181
           S DPY DFRRSM EM+    + D    WD L ELL CYL+LN K  H+ I++AFAD+ V+
Sbjct: 1   SSDPYEDFRRSMVEMIVENGIRD----WDDLEELLACYLSLNAKEHHRAIVAAFADVWVA 56

Query: 182 LMSP 185
           L +P
Sbjct: 57  LFAP 60

This is a family of transcriptional repressors. In plants, these proteins are important regulators of growth and development. Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	194
TIGR01568	66	A_thal_3678 uncharacterized plant-specific domain	100.0
PF04844	59	Ovate: Transcriptional repressor, ovate; InterPro:	100.0
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	80.73

>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568

Probab=100.00  E-value=2.1e-36  Score=218.45  Aligned_cols=66  Identities=61%  Similarity=1.062  Sum_probs=63.1

Q ss_pred             EEEeccCCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhcC
Q 043344          116 VAVPTDSPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMS  184 (194)
Q Consensus       116 vAV~k~S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~L~s  184 (194)
                      |||+|+|.|||.|||+||+|||+++|+.   .+|++|||||+|||+||+++||++|++||+|||++|++
T Consensus         1 vAv~k~S~DPy~DFr~SM~EMI~~~~i~---~~w~~LeeLL~cYL~LN~~~~H~~Iv~AF~dl~~~L~~   66 (66)
T TIGR01568         1 VAVAKESDDPYEDFRRSMEEMIEERELE---ADWKELEELLACYLDLNPKKSHRFIVRAFVDILSALLS   66 (66)
T ss_pred             CeeeeCCCChHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhC
Confidence            6999999999999999999999999985   36999999999999999999999999999999999974

This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.

>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length

Probab=100.00  E-value=1.5e-33  Score=199.59  Aligned_cols=59  Identities=56%  Similarity=0.969  Sum_probs=56.8

Q ss_pred             CCCcHHHHHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHhcC
Q 043344          122 SPDPYVDFRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLVSLMS  184 (194)
Q Consensus       122 S~DPy~DFR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~~L~s  184 (194)
                      |.|||+|||+||+|||+++|++    +|++|||||+|||+||+++||++||+||+|||.+|++
T Consensus         1 S~DP~~DFr~SM~EMI~~~~i~----~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~dv~~~l~s   59 (59)
T PF04844_consen    1 SSDPYEDFRESMVEMIEENGIR----DWDDLEELLACYLSLNSPEHHKFIVEAFVDVWVELFS   59 (59)
T ss_pred             CCCHHHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHhC
Confidence            7899999999999999999997    4999999999999999999999999999999999975

At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=80.73  E-value=3.3  Score=30.72  Aligned_cols=46  Identities=13%  Similarity=0.202  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhcCCCCcCCChHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 043344          129 FRRSMQEMVEARDLFDVKANWDCLHELLLCYLALNPKTTHKFIISAFADLLV  180 (194)
Q Consensus       129 FR~SM~EMI~e~~l~~~~~dw~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~  180 (194)
                      ||+.+...|++---.      .+.+|...|.+.||.+.+|+.++...+..+.
T Consensus         1 ~~k~i~~~l~ey~~~------~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~l   46 (113)
T smart00544        1 LKKKIFLIIEEYLSS------GDTDEAVHCLLELKLPEQHHEVVKVLLTCAL   46 (113)
T ss_pred             ChhHHHHHHHHHHHc------CCHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence            567777776654221      2578888888888877777776666555544

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00