Citrus Sinensis ID: 043364

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMKNSTNSSASNEANCHSKVTTLNDIFPY
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEEccccccHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHccccccccEEcccccccccccccccccHHHHcccccccHHcHHHHHHHHHHccHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccccEEEccccccEEEEEEccEEEEEEEEccEEEEcccccccccccHHHHHHHHHccccHHHccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mcrdgndvvlPIAFCEVQEENLDSWAFFLKNLTYGlrfergeglciladgdngvDEAVEEFLPYGVYRQCCFSLygrmvvkfpdvqlhsafwgacrstdrksfIHHMSIIETVNIEchnwlkdtdsktwalfsmpqwvkstevtksSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFesdgwnvdmpsnnavsfVSRHGFVFEVNRELMTCSCrlwqlsgipcehacrcIHSWGDKLDKYVHRLWSVdeyrsaygpgMQMLREITHWewqtkdnvlqpmknstnssasneanchskvttlndifpy
Flexible Loop (DISEMBL)
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSkfldlnvaQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMKNSTnssasneanchskvttlndifpy
Low Complexity Region (SEG)
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMKnstnssasneanCHSKVTTLNDIFPY
Disordered region (IsUnstruct)
******DVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTK**SEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKD*********************************
Disordered Region (DISOPRED)
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKD*********************************
Disordered Region (DISEMBL)
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWV**********EQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMKN***********CHSKVTTLNDIFPY
Disordered Region (DISPRO)
****GNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMK**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQTKDNVLQPMKNSTNSSASNEANCHSKVTTLNDIFPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
242079489	861	hypothetical protein SORBIDRAFT_07g02309	0.898	0.349	0.253	2e-23
242039061	995	hypothetical protein SORBIDRAFT_01g01680	0.898	0.302	0.243	5e-22
53370698	1030	transposon protein, putative, mutator su	0.889	0.289	0.234	8e-22
297601393	1015	Os03g0648200 [Oryza sativa Japonica Grou	0.889	0.293	0.234	1e-21
90265237	1030	H0322F07.9 [Oryza sativa Indica Group] g	0.892	0.290	0.232	1e-21
218190703	729	hypothetical protein OsI_07142 [Oryza sa	0.868	0.399	0.261	4e-21
50511365	1006	putative polyprotein [Oryza sativa Japon	0.856	0.285	0.236	5e-21
222612932	948	hypothetical protein OsJ_31731 [Oryza sa	0.895	0.316	0.256	2e-20
147821706	632	hypothetical protein VITISV_007696 [Viti	0.740	0.392	0.283	5e-20
7523705	726	Similar to maize transposon mudrA protei	0.865	0.399	0.267	6e-20

>gi|242079489|ref|XP_002444513.1| hypothetical protein SORBIDRAFT_07g023090 [Sorghum bicolor] gi|241940863|gb|EES14008.1| hypothetical protein SORBIDRAFT_07g023090 [Sorghum bicolor]

 Score =  115 bits (289), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 134/308 (43%), Gaps = 7/308 (2%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+  +W +FL+ L   L+ +      I+ D   G+  AV++  P
Sbjct: 378 DPNDCIYPIAFAVVEVESFVTWKWFLETLKTDLQIDNTFPWTIMTDKQKGLIPAVKQVFP 437

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY     K+    L    W   RS+  + +  +M  ++ +N + + WL+ 
Sbjct: 438 ESEHRFCVRHLYANFNEKYKGEILKKQLWACARSSSVQQWTRNMEKMKALNEDAYKWLEK 497

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  +L +    + + R   ++  R Y 
Sbjct: 498 MPPNTWVRAYFSEFPKCDILLNNNCEVFNSYILEARELPI---LSMLERIKCQLMTRHYN 554

Query: 184 AGWEWVYD---KITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTC 240
              E   D      P  R+++  N  E        PS   V  V    +   V+    TC
Sbjct: 555 KQQELGKDIQGAFCPKIRKKVAKNA-EFANMCFAAPSGQGVFQVQIKDYQHIVDINARTC 613

Query: 241 SCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQT 300
            CR WQL+G+PC HA  C+ S     +  +   +SV+ Y++AYG  +   ++ T WE   
Sbjct: 614 DCRRWQLTGVPCCHAISCLRSERIPPESVLANCYSVEAYKNAYGFNIWPCKDKTEWEKMN 673

Query: 301 KDNVLQPM 308
              VL P+
Sbjct: 674 GPEVLPPV 681

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242039061|ref|XP_002466925.1| hypothetical protein SORBIDRAFT_01g016800 [Sorghum bicolor] gi|241920779|gb|EER93923.1| hypothetical protein SORBIDRAFT_01g016800 [Sorghum bicolor]

 Score =  111 bits (277), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 133/308 (43%), Gaps = 7/308 (2%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+  +W +FL++L   L+ +      I+ D   G+   V++  P
Sbjct: 489 DPNDCIYPIAFAVVEVESFVTWKWFLESLKADLQIDNTFPWTIMTDKQKGLIPTVKQVFP 548

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY     KF    L    W   RS+  + +  +M  ++ +N++ + W++ 
Sbjct: 549 ESEHRFCVRHLYANFNEKFKGEILKKQLWACARSSSVQQWTRNMEKMKDLNVDAYQWIEK 608

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  DL +    + + R    +  R Y 
Sbjct: 609 MPPNTWLRAYFSEFPKCDILLNNNCEVFNSYILEARDLPI---LSMLERIKCPLMTRHYS 665

Query: 184 AGWEW---VYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTC 240
              E    +     P  R+++  N  E        PS   V  V    +   V+    TC
Sbjct: 666 KQQEIGKHIQGAFCPKIRKKVAKNA-EFANMCFASPSGQGVFQVQIKDYQHIVDINARTC 724

Query: 241 SCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQT 300
            CR WQL+G+PC HA  C+ S     +  +   +SV+ +++AYG  +   ++ T W    
Sbjct: 725 DCRRWQLTGVPCCHAISCLRSERIPPESVLANCYSVEAFKNAYGFNIWPCKDKTEWAKVN 784

Query: 301 KDNVLQPM 308
              VL P+
Sbjct: 785 GPEVLPPI 792

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|53370698|gb|AAU89193.1| transposon protein, putative, mutator sub-class [Oryza sativa Japonica Group]

 Score =  110 bits (275), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+L +W +FL+ L   L  E      I+ D   G+  AV++  P
Sbjct: 534 DPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFP 593

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY    ++F    L +  W   RS+  + +  +M ++  +N   + WL+ 
Sbjct: 594 ESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEK 653

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  +L +     T+   I      R+ 
Sbjct: 654 LPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHF 709

Query: 184 AGWEWVYDK----ITPAARQQIIHNVFESDGWNV--DMPSNNAVSFVSRHGFVFEVNREL 237
              + + D+    I P  R++++ N   +D  N    +P+   +  V    + + V+   
Sbjct: 710 NKQKELADQFQGLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINA 766

Query: 238 MTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWE 297
           M C CR W L+GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE
Sbjct: 767 MYCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWE 826

Query: 298 WQTKDNVLQPM 308
                 +  P+
Sbjct: 827 NVNGPEIKPPV 837

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297601393|ref|NP_001050777.2| Os03g0648200 [Oryza sativa Japonica Group] gi|255674744|dbj|BAF12691.2| Os03g0648200 [Oryza sativa Japonica Group]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 134/311 (43%), Gaps = 13/311 (4%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+L +W +FL+ L   L  E      I+ D   G+  AV++  P
Sbjct: 519 DPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFP 578

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY    ++F    L +  W   RS+  + +  +M ++  +N   + WL+ 
Sbjct: 579 ESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEK 638

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  +L +     T+   I      R+ 
Sbjct: 639 LPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHF 694

Query: 184 AGWEWVYDK----ITPAARQQIIHNVFESDGWNV--DMPSNNAVSFVSRHGFVFEVNREL 237
              + + D+    I P  R++++ N   +D  N    +P+   +  V    + + V+   
Sbjct: 695 NKQKELADQFQGLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINA 751

Query: 238 MTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWE 297
           M C CR W L+GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE
Sbjct: 752 MYCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWE 811

Query: 298 WQTKDNVLQPM 308
                 +  P+
Sbjct: 812 NVNGPEIKPPV 822

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90265237|emb|CAH67772.1| H0322F07.9 [Oryza sativa Indica Group] gi|90399190|emb|CAH68177.1| H0403D02.5 [Oryza sativa Indica Group]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 134/310 (43%), Gaps = 11/310 (3%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+L +W +FL+ L   L  E      I+ D   G+  AV++  P
Sbjct: 534 DPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFP 593

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY    ++F    L +  W   RS+  + +  +M ++  +N   + W++ 
Sbjct: 594 ESEHRFCVRHLYSNFQLQFKGEVLKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWIEK 653

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  +L +    T + +   ++  R + 
Sbjct: 654 LPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI---LTMLEKIKGQLMTRHFN 710

Query: 184 AGWEWV---YDKITPAARQQIIHNVFESDGWNV--DMPSNNAVSFVSRHGFVFEVNRELM 238
              E V      I P  R++++ N   +D  N    +P+   +  V    + + V+   M
Sbjct: 711 KQKELVDQFQGLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINAM 767

Query: 239 TCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEW 298
            C CR W L+GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE 
Sbjct: 768 HCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWEN 827

Query: 299 QTKDNVLQPM 308
                +  P+
Sbjct: 828 VNGPEIKPPV 837

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218190703|gb|EEC73130.1| hypothetical protein OsI_07142 [Oryza sativa Indica Group]

 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 127/295 (43%), Gaps = 4/295 (1%)

Query: 3   RDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFL 62
           RDGN+ + PIA+  V++E  DSW +F   L   L    G GL  + D   G+  AVE + 
Sbjct: 394 RDGNNQMYPIAWAIVEKETNDSWDWFCDLLFKDLGVGDGNGLVFILDQQKGILNAVENWA 453

Query: 63  PYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLK 122
           P   +R C   +Y     KF   +    FW   ++ +   F    + +    +E    + 
Sbjct: 454 PNAEHRNCARHIYANWKKKFSKKEWQKKFWRCAKAPNVMLFNLAKAKLAQETVEGARAIM 513

Query: 123 DTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRY 182
           +TD K W+            V  +  E    W+ +   L +      I R +    Q + 
Sbjct: 514 NTDPKHWSRAWFRFGSNCDSVDNNICETFNKWIVQARFLPIISMLEAIRRKVMVRIQAQR 573

Query: 183 LAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRH-GFVFEVNRELMTCS 241
               +WV   + P   +++  N +  D  +     N    F  +H    F V+ E  TCS
Sbjct: 574 TVMDKWV-GSVCPNILKKL--NAYIIDSSSCHAICNGMDKFEVKHQTHRFTVDLEKKTCS 630

Query: 242 CRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHW 296
           CR W+LSG+PC HA  CIH   + LD+Y+   +S+  ++  Y   ++++  +  W
Sbjct: 631 CRYWELSGLPCCHAIACIHFRTNCLDRYIAPCYSIYSFKKTYSYCLELVEGMESW 685

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|50511365|gb|AAT77288.1| putative polyprotein [Oryza sativa Japonica Group]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 130/300 (43%), Gaps = 13/300 (4%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           D ND + PIAF  V+ E+L +W +FL+ L   L  E      I+ D   G+  AV++  P
Sbjct: 510 DPNDCIYPIAFAVVEVESLATWKWFLETLKNDLGIENTYPWTIMTDKQKGLIPAVQQVFP 569

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +R C   LY    ++F      +  W   RS+  + +  +M ++  +N   + WL+ 
Sbjct: 570 ESEHRFCVRHLYSNFQLQFKGEVPKNQLWACARSSSVQEWNKNMDVMRNLNKSAYEWLEK 629

Query: 124 TDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRYL 183
               TW      ++ K   +  ++ E    ++ +  +L +     T+   I      R+ 
Sbjct: 630 LPPNTWVRAFFSEFPKCDILLNNNCEVFNKYILEARELPI----LTMLEKIKGQLMTRHF 685

Query: 184 AGWEWVYDK----ITPAARQQIIHNVFESDGWNV--DMPSNNAVSFVSRHGFVFEVNREL 237
              + + D+    I P  R++++ N   +D  N    +P+   +  V    + + V+   
Sbjct: 686 NKQKELADQFQGLICPKIRKKVLKN---ADAANTCYALPAGQGIFQVHEREYQYIVDINA 742

Query: 238 MTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWE 297
           M C CR W L+GIPC HA  C+       +  +   ++ D +  AYG  +    + + WE
Sbjct: 743 MHCDCRRWDLTGIPCNHAISCLRHERINAESILPNCYTTDAFSKAYGFNIWPCNDKSKWE 802

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222612932|gb|EEE51064.1| hypothetical protein OsJ_31731 [Oryza sativa Japonica Group]

 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 129/308 (41%), Gaps = 8/308 (2%)

Query: 3   RDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFL 62
           RD N+ + PIA+  V +EN + W +FL  L   L+   G G   ++D   G+  AVE++ 
Sbjct: 512 RDANNQMYPIAWAVVHKENNEEWDWFLDLLCSDLKVLDGTGWVFISDQQKGIINAVEKWA 571

Query: 63  PYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLK 122
           P   +R C   +Y      F D +    FW   ++  R  F    + +  V       + 
Sbjct: 572 PQAEHRNCARHIYANWKRHFSDKEFQKKFWRCAKAPCRMLFNLARAKLAQVTPAGAQAIL 631

Query: 123 DTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMF--QR 180
           +T  + W+            V  +  E    W+ +     +     TI R +      QR
Sbjct: 632 NTHPEHWSRAWFKLGSNCDSVDNNMCESFNKWILEARFFPIITMLETIRRKVMVRISEQR 691

Query: 181 RYLAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSF-VSRHGFVFEVNRELMT 239
           +  A W  V   + P   +++  NV+ ++        N A SF V  H   F V  +   
Sbjct: 692 KVSARWNTV---VCPGILKKL--NVYITESAYCHAICNGADSFEVKHHTNRFTVQLDKKE 746

Query: 240 CSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWEWQ 299
           CSCR WQLSG+PC HA  CI    + LD++    + VD ++S Y   +  +  +  W   
Sbjct: 747 CSCRYWQLSGLPCPHAIACIFYRTNTLDEFTADCYKVDAFKSTYKHCLLPVEGMNAWPED 806

Query: 300 TKDNVLQP 307
            ++ +  P
Sbjct: 807 DREPLTAP 814

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147821706|emb|CAN65999.1| hypothetical protein VITISV_007696 [Vitis vinifera]

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 27/275 (9%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNL--TYGLRFERGEGLCILADGDNGVDEAVEEF 61
           DGND + PIAF  V+ EN  SW +FL+ L    G   E G GL           E  ++ 
Sbjct: 343 DGNDNIFPIAFAIVEIENKSSWTWFLQCLLDDIGHVDENGWGLV----------ETFKDL 392

Query: 62  LPYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWL 121
           +P   +R C   L+      FP   L  A W A R+T + SF  HM  ++ ++++ + WL
Sbjct: 393 MPNAEHRFCVRHLHXNFKKDFPXKVLKDAMWSAARATTKNSFDFHMDELKKLDVKAYEWL 452

Query: 122 KDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQ-- 179
              D +TW+  +     KS  +  + +E    W+ +  D  V      I   + +  Q  
Sbjct: 453 VKLDVRTWSRHAFNPRSKSDTLVNNIAESFNAWILEAXDKPVLTMMEIIRVMLMQRLQTK 512

Query: 180 RRYLAGWEW-----VYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVN 234
           R ++  +E      +Y K+    + ++ H +     WN +  S   V ++    +V ++N
Sbjct: 513 RDHMRRYEGRVCPRIYKKLE-RIKXEVGHCISR---WNGE--SKYEVEYIYGGRYVVDLN 566

Query: 235 RELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKY 269
               TC C  W LSGIPC HA   I   G++L+ Y
Sbjct: 567 ER--TCGCGRWGLSGIPCFHAAAAIIEHGEQLETY 599

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7523705|gb|AAF63144.1|AC011001_14 Similar to maize transposon mudrA protein [Arabidopsis thaliana] gi|46518483|gb|AAS99723.1| At1g06740 [Arabidopsis thaliana] gi|62319905|dbj|BAD93972.1| mudrA-like protein [Arabidopsis thaliana]

 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 130/295 (44%), Gaps = 5/295 (1%)

Query: 4   DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLP 63
           DG+  V P+AF  V EEN D+W  FL  L   L  E    L IL+ G+  V + VE   P
Sbjct: 378 DGDGAVFPLAFAIVNEENDDNWHRFLSELRKILD-ENMPKLTILSSGERPVVDGVEANFP 436

Query: 64  YGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECHNWLKD 123
              +  C   L  R   +F    L   FW A        F   ++ IE ++ E   W+++
Sbjct: 437 AAFHGFCLHYLTERFQREFQSSVLVDLFWEAAHCLTVLEFKSKINKIEQISPEASLWIQN 496

Query: 124 TDSKTWALFSMPQWVKSTEVTKSS-SEQLRIWLSKFLDLNVAQRYTTITRTIAEMFQRRY 182
                WA  S  +  +  ++T +  +E L  W+     L + Q    I R +  M + R 
Sbjct: 497 KSPARWA-SSYFEGTRFGQLTANVITESLSNWVEDTSGLPIIQTMECIHRHLINMLKERR 555

Query: 183 LAGWEWVYDKITPAARQQIIHNVFESDGWNVDMPSNNAVSFVSRHGFVFEVNRELMTCSC 242
                W  + + P+A +Q++  + +S    V   +      ++  G V  VN E  +C C
Sbjct: 556 ETSLHW-SNVLVPSAEKQMLAAIEQSRAHRVYRANEAEFEVMTCEGNVV-VNIENCSCLC 613

Query: 243 RLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYGPGMQMLREITHWE 297
             WQ+ G+PC HA   + S  + + +Y    ++V+ YR AY   ++ + +   W+
Sbjct: 614 GRWQVYGLPCSHAVGALLSCEEDVYRYTESCFTVENYRRAYAETLEPISDKVQWK 668

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.376	0.160	0.244	0.00025
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.835	0.389	0.198	0.00049

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 0.00025, P = 0.00025
 Identities = 33/135 (24%), Positives = 60/135 (44%)

Query:     4 DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEE--- 60
             D  +   P+AF   +E ++DSW +FL  +    +  + +G+C+++  D  +   + E   
Sbjct:   404 DATNQYFPLAFAVTKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDPDILAVINEPGS 461

Query:    61 --FLPYGVYRQCCFSLYGRMVVKFP--DVQLHSAFWGACRSTDRKSFIHHMSIIETVNIE 116
                 P+  +R C + L  ++    P  D  +H     A  S+ ++ F  +M  I+  N E
Sbjct:   462 QWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPE 521

Query:   117 CHNWLKDTDSKTWAL 131
                WL       WAL
Sbjct:   522 AWKWLDQFPPHQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
 Identities = 62/312 (19%), Positives = 121/312 (38%)

Query:     4 DGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEE--F 61
             D  +   P+AF   +E + DSW +F   +    +  + + LC+++     +   V E   
Sbjct:   401 DAANKFFPLAFAVTKEVSTDSWRWFFTKIRE--KVTQRKDLCLISSPLRDIVAVVNEPGS 458

Query:    62 L---PYGVYRQCCFSLYGRMVVKFPDVQLHSAFWGACRSTDRKSFIHHMSIIETVNIECH 118
             L   P+  ++ C   L  + +  F D  L S    A  +  ++ F  +M+ I+  N E  
Sbjct:   459 LWQEPWAHHKFCLNHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAW 518

Query:   119 NWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRIWLSKFLDLNVA----------QRYT 168
              WL       WAL +    ++   + +   E L      F    VA          +  +
Sbjct:   519 KWLDQIPRHKWAL-AHDSGLRYG-IIEIDREALFAVCRGFPYCTVAMTGGVMLMFDELRS 576

Query:   169 TITRTIAEMFQ--RRYLAGWEWVYDKITPAARQQIIHNV--FESDGWNVDMPSNNAVSFV 224
             +  ++++ ++    R +   E   DK+       I + +   E D + V   S       
Sbjct:   577 SFDKSLSSIYSSLNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSE------ 630

Query:   225 SRHGFVFEVNRELMTCSCRLWQLSGIPCEHACRCIHSWGDKLDKYVHRLWSVDEYRSAYG 284
              +  ++ ++N  + TC+CR +Q    PC HA            +YV   ++V++Y   Y 
Sbjct:   631 -KEEWIVQLN--VSTCTCRKFQSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYA 687

Query:   285 PGMQMLREITHW 296
                  + ++  W
Sbjct:   688 ATFSPVPDVAAW 699


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.136   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       323   0.00086  116 3  11 22  0.47    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  625 (66 KB)
  Total size of DFA:  289 KB (2147 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.45u 0.11s 26.56t   Elapsed:  00:00:01
  Total cpu time:  26.45u 0.11s 26.56t   Elapsed:  00:00:01
  Start:  Thu May  9 23:21:31 2013   End:  Thu May  9 23:21:32 2013

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-07
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	5e-06
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	0.002

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 1  MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEE 60
          +  D +    P+AF  V +E+ +SW +FL+ L   L       L I++DGD G+ +A++E
Sbjct: 12 VGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALG--GRPPLTIISDGDKGLKKAIKE 69

Query: 61 FLPYGVYRQC 70
            P   +R C
Sbjct: 70 VFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 14/17 (82%), Positives = 15/17 (88%)

Query: 239 TCSCRLWQLSGIPCEHA 255
           TCSCR +QLSGIPC HA
Sbjct: 2   TCSCRKFQLSGIPCRHA 18

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 239 TCSCRLWQLSGIPCEHA 255
           +CSC  +QL GIPC+HA
Sbjct: 14  SCSCPAFQLYGIPCKHA 30

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.83
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.77
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.3
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	99.19
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.55
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	94.9
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.12
PF13610	140	DDE_Tnp_IS240: DDE domain	91.88
COG5431	117	Uncharacterized metal-binding protein [Function un	83.65
COG3316	215	Transposase and inactivated derivatives [DNA repli	81.03

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=1.8e-51  Score=410.41  Aligned_cols=276  Identities=14%  Similarity=0.240  Sum_probs=237.0

Q ss_pred             CcccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhh
Q 043364            1 MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVV   80 (335)
Q Consensus         1 vg~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~   80 (335)
                      ||+|+|+|.+++||||+.+|+.++|.|+|++|  +.+|+++.|.+||||++.+|.+||++|||++.||+|+|||++|+.+
T Consensus       308 vGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tf--l~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e  385 (846)
T PLN03097        308 VGVNQHYQFMLLGCALISDESAATYSWLMQTW--LRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSE  385 (846)
T ss_pred             EEecCCCCeEEEEEEEcccCchhhHHHHHHHH--HHHhCCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHH
Confidence            69999999999999999999999999999999  7899999999999999999999999999999999999999999999


Q ss_pred             hCC-----CchHHHHHHHHhh-cccHHHHHHHHHH-HHHhchhhhhhhhhc--CCcccccccCCCCCccceeecChHHHH
Q 043364           81 KFP-----DVQLHSAFWGACR-STDRKSFIHHMSI-IETVNIECHNWLKDT--DSKTWALFSMPQWVKSTEVTKSSSEQL  151 (335)
Q Consensus        81 ~~~-----~~~~~~~~~~~~~-~~~~~~F~~~~~~-l~~~~~~~~~~L~~~--~~~~Wa~~~~~~~~~~~~~TtN~~Es~  151 (335)
                      +++     .+.|.+.|.+|++ +.+++||+..|.. |.+++.+.++||..+  .|++||++|+...+..|+.||+++||+
T Consensus       386 ~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~  465 (846)
T PLN03097        386 NLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESI  465 (846)
T ss_pred             HhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccH
Confidence            875     3578999999987 7899999999987 568999999999987  899999999999999999999999999


Q ss_pred             HHHHhhc--ccCcHHHHHHHHHHHHHHHHHHHHh-h---------------hhccccCCCCHHHHHHHHhhccccCccee
Q 043364          152 RIWLSKF--LDLNVAQRYTTITRTIAEMFQRRYL-A---------------GWEWVYDKITPAARQQIIHNVFESDGWNV  213 (335)
Q Consensus       152 N~~lk~~--r~~pi~~~~e~i~~~~~~~~~~r~~-~---------------~~~~~~~~~tp~~~~kl~~~~~~~~~~~~  213 (335)
                      |+.|++.  +..++..|++.+...+..+..+..+ .               .++..+.+|||.+|++||+|+..  +..|
T Consensus       466 Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~--~~~~  543 (846)
T PLN03097        466 NAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLG--AVAC  543 (846)
T ss_pred             HHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHH--hhhe
Confidence            9999984  5678899988877666544332211 0               01111389999999999999995  7777


Q ss_pred             EEeecC-C---cce-EEe--CCeEEEEEcc----cceecccCcccCCCcchhHHHHHHHhCC--CccccchhhhcHHHHH
Q 043364          214 DMPSNN-A---VSF-VSR--HGFVFEVNRE----LMTCSCRLWQLSGIPCEHACRCIHSWGD--KLDKYVHRLWSVDEYR  280 (335)
Q Consensus       214 ~v~~~~-~---~~f-V~~--~~~~~~V~l~----~~~CsC~~~~~~giPC~H~lav~~~~~~--~~~~~v~~~yt~~~~~  280 (335)
                      .+...+ +   .+| |.+  ....|.|..+    ..+|+|++|+..||||+|||+||...++  .|+.||.++||.++-.
T Consensus       544 ~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~  623 (846)
T PLN03097        544 HPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKS  623 (846)
T ss_pred             EEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhh
Confidence            776542 2   357 876  3467888665    3699999999999999999999999996  6999999999998753

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.83  E-value=8.2e-21  Score=143.43  Aligned_cols=76  Identities=26%  Similarity=0.443  Sum_probs=72.0

Q ss_pred             CcccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhh
Q 043364            1 MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMV   79 (335)
Q Consensus         1 vg~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~   79 (335)
                      +|+|++|+.+|+||+++++|+.++|.|||+.+  +..++.. |.+||||+++|+.+||+++||++.|++|.||+.+|++
T Consensus        18 ~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~--~~~~~~~-p~~ii~D~~~~~~~Ai~~vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   18 VGIDGNGRGFPVAFALVSSESEESYEWFLEKL--KEAMPQK-PKVIISDFDKALINAIKEVFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             EEEcCCCCEEEEEEEEEcCCChhhhHHHHHHh--hhccccC-ceeeeccccHHHHHHHHHHCCCceEehhHHHHHHhhC
Confidence            48999999999999999999999999999999  6677766 9999999999999999999999999999999999974

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.77  E-value=1.5e-19  Score=170.14  Aligned_cols=154  Identities=18%  Similarity=0.298  Sum_probs=133.2

Q ss_pred             CcccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhh
Q 043364            1 MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVV   80 (335)
Q Consensus         1 vg~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~   80 (335)
                      ||+|.+|+..+||+.+.+.|+.++|.-||+.|++ +++.  .+..||+|+++||.+||.++||++.++.|.+|+++|+.+
T Consensus       189 iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~-RGl~--~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~  265 (381)
T PF00872_consen  189 IGIDEDGRREVLGFWVGDRESAASWREFLQDLKE-RGLK--DILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLR  265 (381)
T ss_pred             hhhhcccccceeeeecccCCccCEeeecchhhhh-cccc--ccceeeccccccccccccccccchhhhhheechhhhhcc
Confidence            6999999999999999999999999999999975 4664  589999999999999999999999999999999999999


Q ss_pred             hCCCc---hHHHHHHHHhhcccHHHHHHHHHHH----HHhchhhhhhhhhcCCcccccccCCCCCccceeecChHHHHHH
Q 043364           81 KFPDV---QLHSAFWGACRSTDRKSFIHHMSII----ETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRI  153 (335)
Q Consensus        81 ~~~~~---~~~~~~~~~~~~~~~~~F~~~~~~l----~~~~~~~~~~L~~~~~~~Wa~~~~~~~~~~~~~TtN~~Es~N~  153 (335)
                      +++.+   .+.+.+..+..+.+.++....++.+    ....|.+.++|.+...+.|+...|+...+--+.|||.+||+|+
T Consensus       266 ~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~  345 (381)
T PF00872_consen  266 KVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNK  345 (381)
T ss_pred             ccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhhccccccceeeecchhccccchhhhcccccc
Confidence            88644   5667777777777777777776665    3457888889988888888877777777777889999999999


Q ss_pred             HHhh
Q 043364          154 WLSK  157 (335)
Q Consensus       154 ~lk~  157 (335)
                      .||.
T Consensus       346 ~irr  349 (381)
T PF00872_consen  346 EIRR  349 (381)
T ss_pred             chhh
Confidence            9987

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.30  E-value=8.4e-12  Score=115.93  Aligned_cols=153  Identities=15%  Similarity=0.228  Sum_probs=118.8

Q ss_pred             CcccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhh
Q 043364            1 MCRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVV   80 (335)
Q Consensus         1 vg~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~   80 (335)
                      +|++.+|+..++|+.+.+.|+ ..|.-||..|+. .++.  ....+++|+++|+.+||.++||.+.++.|..|+.+|+..
T Consensus       169 ~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~-rgl~--~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~  244 (379)
T COG3328         169 IGVTEEGRREILGIWVGVRES-KFWLSFLLDLKN-RGLS--DVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLD  244 (379)
T ss_pred             eccCcccchhhhceeeecccc-hhHHHHHHHHHh-cccc--ceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhh
Confidence            699999999999999999999 999988888854 4554  457788899999999999999999999999999999998


Q ss_pred             hCCCch---HHHHHHHHhhcccHHHHHHHH----HHHHHhchhhhhhhhhcCCcccccccCCCCCccceeecChHHHHHH
Q 043364           81 KFPDVQ---LHSAFWGACRSTDRKSFIHHM----SIIETVNIECHNWLKDTDSKTWALFSMPQWVKSTEVTKSSSEQLRI  153 (335)
Q Consensus        81 ~~~~~~---~~~~~~~~~~~~~~~~F~~~~----~~l~~~~~~~~~~L~~~~~~~Wa~~~~~~~~~~~~~TtN~~Es~N~  153 (335)
                      +.+.++   ....+..+..+.+.++-...+    +.+....|....|+.+..-+.|....|+...+--+.|||.+|++|+
T Consensus       245 ~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~  324 (379)
T COG3328         245 KVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNK  324 (379)
T ss_pred             hhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHH
Confidence            876553   333444444455544444444    3344566777888887766777655566555556789999999999


Q ss_pred             HHhh
Q 043364          154 WLSK  157 (335)
Q Consensus       154 ~lk~  157 (335)
                      .++.
T Consensus       325 ~ir~  328 (379)
T COG3328         325 LIRR  328 (379)
T ss_pred             HHHH
Confidence            8764

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=99.19  E-value=9e-12  Score=71.26  Aligned_cols=27  Identities=56%  Similarity=0.936  Sum_probs=25.1

Q ss_pred             ceecccCcccCCCcchhHHHHHHHhCC
Q 043364          238 MTCSCRLWQLSGIPCEHACRCIHSWGD  264 (335)
Q Consensus       238 ~~CsC~~~~~~giPC~H~lav~~~~~~  264 (335)
                      .+|||++||.+||||+|+|+|+...|+
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999999875

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.55  E-value=6.1e-08  Score=60.65  Aligned_cols=31  Identities=32%  Similarity=0.708  Sum_probs=27.2

Q ss_pred             EEcccceecccCcccCCCcchhHHHHHHHhC
Q 043364          233 VNRELMTCSCRLWQLSGIPCEHACRCIHSWG  263 (335)
Q Consensus       233 V~l~~~~CsC~~~~~~giPC~H~lav~~~~~  263 (335)
                      +++...+|+|..|+..|.||+|++|++...+
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            5566789999999999999999999997653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=94.90  E-value=0.11  Score=50.81  Aligned_cols=94  Identities=20%  Similarity=0.307  Sum_probs=76.1

Q ss_pred             eccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhhhCC-CchHHHHHHHHhh
Q 043364           18 QEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKFP-DVQLHSAFWGACR   96 (335)
Q Consensus        18 ~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~~-~~~~~~~~~~~~~   96 (335)
                      ...+.+.|.-+.+.+.+...+.+..-+++.+|+-+.+.+++. .+|++.|.+..+|+.+.+.+.++ .+.+...++++.+
T Consensus       234 ~~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~  312 (470)
T PF06782_consen  234 GESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALK  312 (470)
T ss_pred             ccchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            355678899888888555555555568899999999998876 99999999999999999998875 4567777888888


Q ss_pred             cccHHHHHHHHHHHHH
Q 043364           97 STDRKSFIHHMSIIET  112 (335)
Q Consensus        97 ~~~~~~F~~~~~~l~~  112 (335)
                      .....+++..++.+..
T Consensus       313 ~~d~~~l~~~L~~~~~  328 (470)
T PF06782_consen  313 KGDKKKLETVLDTAES  328 (470)
T ss_pred             hcCHHHHHHHHHHHHH
Confidence            8888888888877653

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.12  E-value=0.046  Score=48.48  Aligned_cols=66  Identities=14%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             EEEeeccccccHHHHHHHh-hhcccccCCCceEEEcCCchhHHHHHHhhCCccchhhhHHHHHHhhhhhC
Q 043364           14 FCEVQEENLDSWAFFLKNL-TYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYRQCCFSLYGRMVVKF   82 (335)
Q Consensus        14 fa~~~~E~~~~w~wfl~~l-~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~n~~~~~   82 (335)
                      ++++++-+.++..=||..+ -. .  ......+|++|...+...|+.+.||+|.+..--+||++++.+.+
T Consensus        30 l~i~~~r~~~~l~~~~~~~~~~-~--~~~~v~~V~~Dm~~~y~~~~~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   30 LDILPGRDKETLKDFFRSLYPE-E--ERKNVKVVSMDMSPPYRSAIREYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             EEEcCCccHHHHHHHHHHhCcc-c--cccceEEEEcCCCccccccccccccccccccccchhhhhhhhcc
Confidence            4578899999998888876 21 1  22467899999999999999999999999999999999987643

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=91.88  E-value=0.038  Score=44.62  Aligned_cols=59  Identities=24%  Similarity=0.252  Sum_probs=50.1

Q ss_pred             cccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCcc
Q 043364            2 CRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYG   65 (335)
Q Consensus         2 g~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a   65 (335)
                      ++|.+++  +|++-|.+.-+...=..||+.+  ..... ..|..|+||+.++...|++++.+..
T Consensus        23 aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~--l~~~~-~~p~~ivtDk~~aY~~A~~~l~~~~   81 (140)
T PF13610_consen   23 AIDAEGN--ILDFYLSKRRDTAAAKRFLKRA--LKRHR-GEPRVIVTDKLPAYPAAIKELNPEG   81 (140)
T ss_pred             eeccccc--chhhhhhhhcccccceeecccc--ceeec-cccceeecccCCccchhhhhccccc
Confidence            5788888  8888899999999989999988  33332 5799999999999999999999874

>COG5431 Uncharacterized metal-binding protein [Function unknown]

Probab=83.65  E-value=0.56  Score=35.08  Aligned_cols=47  Identities=15%  Similarity=0.182  Sum_probs=29.8

Q ss_pred             EeCCeEEEEEcccceecccCcc-----cCCCcchhHHHHHHHhCCCccccchhh
Q 043364          225 SRHGFVFEVNRELMTCSCRLWQ-----LSGIPCEHACRCIHSWGDKLDKYVHRL  273 (335)
Q Consensus       225 ~~~~~~~~V~l~~~~CsC~~~~-----~~giPC~H~lav~~~~~~~~~~~v~~~  273 (335)
                      ...++.|+++.+  -|||..|-     .-.-||.|++++-....-.-.++|+-+
T Consensus        39 vG~~rdYIl~~g--fCSCp~~~~svvl~Gk~~C~Hi~glk~A~~~gk~~~I~~y   90 (117)
T COG5431          39 VGKERDYILEGG--FCSCPDFLGSVVLKGKSPCAHIIGLKVAKITGKYDYIDAY   90 (117)
T ss_pred             EccccceEEEcC--cccCHHHHhHhhhcCcccchhhhheeeeeecCcEEEEEEe
Confidence            334568888877  89998876     234679999986554432223344433

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=81.03  E-value=3.3  Score=35.71  Aligned_cols=61  Identities=18%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             cccCCCCeEEEEEEEeeccccccHHHHHHHhhhcccccCCCceEEEcCCchhHHHHHHhhCCccchh
Q 043364            2 CRDGNDVVLPIAFCEVQEENLDSWAFFLKNLTYGLRFERGEGLCILADGDNGVDEAVEEFLPYGVYR   68 (335)
Q Consensus         2 g~D~~~~~~~lafa~~~~E~~~~w~wfl~~l~~~~~~~~~~~~~iisD~~~~l~~Ai~~vfP~a~h~   68 (335)
                      +||.+|+  +|.+-|...-+...=.-||..+.+  ..  ..|.+|+||+-+....|+.++.+.+.|+
T Consensus        92 Aid~~g~--~Ld~~L~~rRn~~aAk~Fl~kllk--~~--g~p~v~vtDka~s~~~A~~~l~~~~ehr  152 (215)
T COG3316          92 AIDADGL--TLDVWLSKRRNALAAKAFLKKLLK--KH--GEPRVFVTDKAPSYTAALRKLGSEVEHR  152 (215)
T ss_pred             hhccCCC--eEEEEEEcccCcHHHHHHHHHHHH--hc--CCCceEEecCccchHHHHHhcCcchhee
Confidence            5777765  788888888888887888887733  23  4799999999999999999999866665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00