Citrus Sinensis ID: 043376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
MGFSFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIWQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccEEEEEEEcccccccccEEEEEccccccHHHHHHHHHHcccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccccccccccccccHHHEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHccHHHEEcHHHHHHHcccEEEEccccccccccccccccccccccccccccccccccccccccccEcHHHccccccEEEcccHHccHHHHHHHcccEEEEEEccccEEEEEEEEcccEEccccEEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccEEEEEEccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mgfsftiptltfkfhhnfppkpfisfppkrfnfISLRTlkaigpdgkfyptpsdddppeapedtahgvSKFQQIHRQAAKARKRQEDDFKANQSTYLNaiadvddppvntgdvseqddfFGEIDKAVAMKRDEYVKKglikpkkreddTVRQGieelepeevvdleeidelqglrvvsedeedegldddsksgkfdvnldatsdkykdkgnglvldssfdldfdsfgksrarivepKFKMSLAELldeskvvpvsvygdleveitgiqhdsrvvsaGDLFVCcvgrktdghlylsEADKRGAVAVVASKEIDIEETLGCKALVIVedtnlvlphwlpLFIGIRRRIWQ
Flexible Loop (DISEMBL)
MGFSFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLnaiadvddppvNTGDVSEQDDFFGEIDKAVAMKRDEyvkkglikpkkreddtvrqgieelepeevvdleeidelqglrvvsedeedegldddsksgkfdvnldatsdkykdkgnglvldssfdldfdSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITgiqhdsrvvSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEdtnlvlphwlplfigIRRRIWQ
Low Complexity Region (SEG)
MGFSFTIPTLTfkfhhnfppkpfisfppkrfNFISLRTLKAIGPDGKFYptpsdddppeapedtaHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGieelepeevvdleeideLQGLRVVSedeedegldddSKSGKFDVNLDATSDKYKDKGNGlvldssfdldfdsfGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIWQ
Disordered region (IsUnstruct)
***SFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPD*************************************************************************FFGEIDKAVAM****YV****************************************************************************GLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIW*
Disordered Region (DISOPRED)
**FSF**PTLTFKFHHNFPP*PFISF***RFN*ISLR***AI************************GVSKFQ***************************I******************FFGEIDKAVAMKRDEYV*************************EVVDLEEIDELQGLRV***********************DATSDKYKDKGNGLVLDSSFDL******************MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRI**
Disordered Region (DISEMBL)
MGFSFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGKFYPTPS***********************************FKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDLEEIDELQGLRVV************SKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIWQ
Disordered Region (DISPRO)
*GFSFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGKFYPTPS*************GVSKFQQIHRQAAKARKRQEDDFKANQST*LNAI*D***********SEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKRED**VRQGIEELEPEEVVDLEEIDELQGLRVVSE*******************************NGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIW*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFSFTIPTLTFKFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRRRIWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	348	2.2.26 [Sep-21-2011]
Q0AYR3	489	UDP-N-acetylmuramoyl-L-al	yes	no	0.232	0.165	0.428	9e-10
A8MH31	487	UDP-N-acetylmuramoyl-L-al	yes	no	0.229	0.164	0.439	2e-09
Q8A254	482	UDP-N-acetylmuramoyl-L-al	yes	no	0.189	0.136	0.470	3e-09
Q65JY4	488	UDP-N-acetylmuramoyl-L-al	yes	no	0.206	0.147	0.465	2e-08
A6TS66	494	UDP-N-acetylmuramoyl-L-al	yes	no	0.278	0.196	0.352	4e-08
Q5LIJ3	485	UDP-N-acetylmuramoyl-L-al	yes	no	0.189	0.136	0.411	1e-07
Q64ZL7	485	UDP-N-acetylmuramoyl-L-al	yes	no	0.189	0.136	0.411	1e-07
Q182Z8	484	UDP-N-acetylmuramoyl-L-al	yes	no	0.204	0.146	0.373	2e-07
Q748D2	509	UDP-N-acetylmuramoyl-L-al	yes	no	0.267	0.182	0.393	4e-07
Q8CZE4	492	UDP-N-acetylmuramyl-tripe	yes	no	0.201	0.142	0.388	4e-07

>sp|Q0AYR3|MURE_SYNWW UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=murE PE=3 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
           G L+ EI+GI +DSR V  GDLF+C  G K+DGHL+  +A + GAVAV+A +++D   T 
Sbjct: 17  GPLDREISGIAYDSRRVKPGDLFICISGLKSDGHLFAGQAIENGAVAVLAERQLD---TG 73

Query: 318 GCKALVIVEDTNLVLPHWLPLFIG 341
           G   L+   DT   L      + G
Sbjct: 74  GKATLLTTPDTRSALALLAANYYG 97

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.
Syntrophomonas wolfei subsp. wolfei (strain Goettingen) (taxid: 335541)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 3

>sp|A8MH31|MURE_ALKOO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Alkaliphilus oremlandii (strain OhILAs) GN=murE PE=3 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 2/82 (2%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L ELL   +V  +   G+++++I  I  DSR V+   LF+C  G KT G LY++EA +
Sbjct: 1   MYLQELLKGIQVEKI--IGNMDIDIEDIYFDSRFVTQKSLFICIEGFKTTGSLYINEAIQ 58

Query: 300 RGAVAVVASKEIDIEETLGCKA 321
           RGAVA+++ KEI IE T   K 
Sbjct: 59  RGAVAILSEKEIAIEGTTTIKV 80

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Alkaliphilus oremlandii (strain OhILAs) (taxid: 350688)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q8A254|MURE_BACTN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=murE PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 2/68 (2%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L ELL    + PV V GD  +EITG+  DSR+V AG LF+   G +TDGH Y+  A +
Sbjct: 1   MLLNELL--KAIQPVQVTGDSRIEITGVNIDSRLVEAGQLFMAMRGTQTDGHAYIPAAIQ 58

Query: 300 RGAVAVVA 307
           +GA A++ 
Sbjct: 59  KGATAILC 66

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q65JY4|MURE_BACLD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=murE PE=3 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L +LL   K VP S  G  + +IT I+ DSR V  G LFVC  G   DGH Y  +A +
Sbjct: 1   MKLTKLLTYLKNVP-SYAGQEDPDITSIEMDSREVKTGSLFVCIKGYTVDGHDYARQAAE 59

Query: 300 RGAVAVVASKEID 312
           +GA A+VA +E+D
Sbjct: 60  KGAAAIVAEREVD 72

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|A6TS66|MURE_ALKMQ UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Alkaliphilus metalliredigens (strain QYMF) GN=murE PE=3 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L +LL+E  +  + + G+  + I  I +DSR V+   LF+C  G +TDGH ++ +A K
Sbjct: 1   MKLMDLLEE--IDTIEIKGEERINIENIYYDSRKVTPNSLFICIEGFQTDGHHFIDQAIK 58

Query: 300 RGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
           +GA+A+VA K++     L     V V+DT  V+      F G
Sbjct: 59  KGAIAIVAQKDMT---GLDGVTWVQVKDTRQVMAQLGSTFYG 97

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Alkaliphilus metalliredigens (strain QYMF) (taxid: 293826)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q5LIJ3|MURE_BACFN UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=murE PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L E+L  + + PV + G+ ++EITG+  DSR V +G LF+   G +TDGH Y+  A +
Sbjct: 1   MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58

Query: 300 RGAVAVVA 307
           +GA A++ 
Sbjct: 59  KGATAILC 66

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q64ZL7|MURE_BACFR UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Bacteroides fragilis (strain YCH46) GN=murE PE=3 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 2/68 (2%)

Query: 240 MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADK 299
           M L E+L  + + PV + G+ ++EITG+  DSR V +G LF+   G +TDGH Y+  A +
Sbjct: 1   MKLKEIL--TSIQPVKITGNQDIEITGVDIDSRQVESGHLFMAMHGTQTDGHAYIPAAVE 58

Query: 300 RGAVAVVA 307
           +GA A++ 
Sbjct: 59  KGATAILC 66

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Bacteroides fragilis (strain YCH46) (taxid: 295405)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q182Z8|MURE_CLOD6 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Clostridium difficile (strain 630) GN=murE PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 4/75 (5%)

Query: 254 VSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI 313
           ++V G+L ++I  +Q+DSR V+ G LF+C  G  +DGH Y+ +A ++GA A +  +++ I
Sbjct: 13  INVKGELNIDINNVQYDSRKVTKGTLFICIKGFVSDGHKYIKDAIEKGASAFIVEEDVAI 72

Query: 314 EETLGCKALVIVEDT 328
           +   GC   + V+DT
Sbjct: 73  K---GC-TFIKVKDT 83

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q748D2|MURE_GEOSL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=murE PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 245 LLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
           L D ++VV P++V GDL  EI G+  DSR V +G LF    G  +DGH +++ A +RGAV
Sbjct: 3   LEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAV 62

Query: 304 AVVASKEIDIEETLGCKA-LVIVEDTNLVLPHWLPLFIG 341
           AVV    ++ E    C    + V D  L +     LF G
Sbjct: 63  AVV----LEDETRAPCGMEWIRVGDARLAMSRMAALFYG 97

Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 3

>sp|Q8CZE4|MURE2_OCEIH UDP-N-acetylmuramyl-tripeptide synthetase 2 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=murE2 PE=3 SV=1

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
           G L   I+ I H+SR V    LF+C  G   DGH +++EA + GA  +VA +E++++   
Sbjct: 17  GKLPNTISSISHNSRQVDDNSLFICISGFTVDGHNFVAEAVENGATCIVAEREVNLDTNK 76

Query: 318 GCKALVIVEDTN 329
               L+IV DTN
Sbjct: 77  A--TLIIVPDTN 86

Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan.

Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) (taxid: 221109)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
359474007	774	PREDICTED: UDP-N-acetylmuramoyl-L-alanyl	0.928	0.417	0.630	1e-105
365222938	771	Hop-interacting protein THI138 [Solanum	0.882	0.398	0.649	1e-104
255537491	780	UDP-n-acetylmuramoylalanyl-d-glutamate--	0.928	0.414	0.622	1e-99
224058479	777	predicted protein [Populus trichocarpa]	0.942	0.422	0.627	1e-98
449452306	779	PREDICTED: UDP-N-acetylmuramoyl-L-alanyl	0.910	0.406	0.630	5e-96
356528442	750	PREDICTED: UDP-N-acetylmuramoyl-L-alanyl	0.853	0.396	0.586	3e-89
297840127	767	PDE316 [Arabidopsis lyrata subsp. lyrata	0.887	0.402	0.548	2e-84
356511484	748	PREDICTED: UDP-N-acetylmuramoyl-L-alanyl	0.816	0.379	0.612	2e-84
240254313	772	Mur-ligase, Mur-ligase-C and Mur-ligase-	0.882	0.397	0.536	2e-77
12324934	767	putative UDP-N-acetylmuramoylalanyl-D-gl	0.882	0.400	0.536	2e-77

>gi|359474007|ref|XP_002270348.2| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/360 (63%), Positives = 264/360 (73%), Gaps = 37/360 (10%)

Query: 1   MGFSFTIPTLTFKFHHNFPPKPFIS--------FPPKRFNFISLRTLKAIGPDGKFYPTP 52
           M  +F   T  F + H+   KP IS        FP  R     LR+   +   G F P P
Sbjct: 1   MALTFFSLTTPFMYPHSLCLKPSISQFKSLHGFFPLHR----RLRSPAVVVSAGNFDPNP 56

Query: 53  SDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGD 112
           +DDDPPEAPED+AHG+ KFQQI RQAA+ARKR+E+ FK +QST+LNAIADV+D P N   
Sbjct: 57  ADDDPPEAPEDSAHGLFKFQQIQRQAARARKREEEQFKKDQSTFLNAIADVEDAPDNVDS 116

Query: 113 VSEQ---DDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTV----RQGIEELEPEEVVDL 165
           +  +   DD FGEIDKA+AMKR E+VK+GL+KP  +++  V     +GIEELEP+EVVDL
Sbjct: 117 IDAEGAGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKESVVPEEIAEGIEELEPDEVVDL 176

Query: 166 EEIDELQGLRVVSED---EEDEGLDDD-SKSGKFDVNLDATSDKYKDKGNGLVLDSSFDL 221
           EEI+EL+GL V+SED   EE E LDD+ S SG    N++  S  +          SSFD+
Sbjct: 177 EEINELRGLTVISEDLDDEESEKLDDEESDSG----NVNGGSSSH----------SSFDV 222

Query: 222 DFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFV 281
           DFDSFG+S  RIVEPKF+MSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVS+GDLFV
Sbjct: 223 DFDSFGESGVRIVEPKFRMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFV 282

Query: 282 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
           CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDT+LVLP     F G
Sbjct: 283 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYG 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222938|gb|AEW69821.1| Hop-interacting protein THI138 [Solanum lycopersicum]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/328 (64%), Positives = 247/328 (75%), Gaps = 21/328 (6%)

Query: 14  FHHNFPP---KPFISFPPKRFNF-ISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVS 69
            HH  PP   KPFIS    R     +L T+ AIG DGK+YPTPSDDDPPEAPED+ HGV+
Sbjct: 15  LHHTLPPLQFKPFISLHHLRLKHPTTLTTVSAIGADGKYYPTPSDDDPPEAPEDSMHGVN 74

Query: 70  KFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVN--TGDVSEQDDFFGEIDKAV 127
           KFQQI RQAAKARK+QE+ FK  QS ++NA+ADV+D P N    D    DD FGEIDKA+
Sbjct: 75  KFQQIQRQAAKARKQQEELFKKEQSIFVNALADVEDAPDNPLVNDSDSGDDLFGEIDKAI 134

Query: 128 AMKRDEYVKKGLIKPKKREDDTVR---QGIEELEPEEVVDLEEIDELQGLRVVSEDEEDE 184
           A+KR E+VK+GL+KP  ++   V    +GI+EL PEEVVDLEEI EL GL  +SE EE E
Sbjct: 135 ALKRKEFVKQGLLKPNPKKSALVEVEVEGIDELLPEEVVDLEEISELTGLTEISEGEESE 194

Query: 185 GLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAE 244
               D     F+V+ D    ++ D        SSFD+DFD +GK++ RI EPKF+MSLAE
Sbjct: 195 EDRSD-----FEVSDDVVKAEFSDL-------SSFDIDFDEYGKAKPRIAEPKFRMSLAE 242

Query: 245 LLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVA 304
           LLDES+VVPVSVYGDLEVEI+GIQHDSR+V +GDLFVCCVG KTDGHLYLSEADKRGAVA
Sbjct: 243 LLDESRVVPVSVYGDLEVEISGIQHDSRLVESGDLFVCCVGMKTDGHLYLSEADKRGAVA 302

Query: 305 VVASKEIDIEETLGCKALVIVEDTNLVL 332
           VVASKEIDIEETLGCKALVIVEDTN VL
Sbjct: 303 VVASKEIDIEETLGCKALVIVEDTNAVL 330

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537491|ref|XP_002509812.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis] gi|223549711|gb|EEF51199.1| UDP-n-acetylmuramoylalanyl-d-glutamate--2,6-diaminopimelate ligase, putative [Ricinus communis]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 223/358 (62%), Positives = 257/358 (71%), Gaps = 35/358 (9%)

Query: 1   MGFSFTIPTLTFKFHHNF---------PPKPFISFPPKRFNFISLRT----LKAIGPDGK 47
           M F+FT    T   H NF          P   +S PP    F SLR     L A+G DG 
Sbjct: 1   MAFTFTSQLHTLSSHLNFISLKRQFTIKPVHSLSRPP----FPSLRHQQNPLLAVGQDGN 56

Query: 48  FYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIA--DVDD 105
           FYP PS DDPPEAPED+AHG SKF QIH QAA+ARK QE+DFK +QSTYLNAIA  +++D
Sbjct: 57  FYPNPSADDPPEAPEDSAHGFSKFDQIHIQAARARKIQEEDFKKHQSTYLNAIAGSEIED 116

Query: 106 PPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKRE---DDTVRQGIEELEPEEV 162
           P V++   +  DD FGEIDKA+A+KR+E++K+GL+KP  R    +D V +GIEELEPEEV
Sbjct: 117 PSVSS-SSTSGDDLFGEIDKAIALKREEFIKQGLLKPTVRNKGNEDVVSEGIEELEPEEV 175

Query: 163 VDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGN-GLVLDSSFDL 221
           VDL+EI+ELQGLRVV  + +    +       F             KG+ GL  D SFDL
Sbjct: 176 VDLDEINELQGLRVVDAESDSSDDNSSGFDVDF-----------SKKGDLGLSRDPSFDL 224

Query: 222 DFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFV 281
           DFDS+GK +  IVEPKF+MSLAELLDESKVVPVSV GDLEVEITGIQHDSR+V+AGDLFV
Sbjct: 225 DFDSYGKGKTVIVEPKFRMSLAELLDESKVVPVSVAGDLEVEITGIQHDSRMVNAGDLFV 284

Query: 282 CCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
           CCVGR+TDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTN VLP     F
Sbjct: 285 CCVGRRTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNAVLPALSAAF 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058479|ref|XP_002299528.1| predicted protein [Populus trichocarpa] gi|222846786|gb|EEE84333.1| predicted protein [Populus trichocarpa]

 Score =  365 bits (938), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 222/354 (62%), Positives = 257/354 (72%), Gaps = 26/354 (7%)

Query: 1   MGFSFTIPTLTFKFHHN--FPPKPFISFP-------PKRFNFISLR----TLKAIGPDGK 47
           M F+FT+ + TF   +     PKP    P       PK  +F+SL     +L AIGPDGK
Sbjct: 1   MAFTFTLQSHTFLSQNPNLLSPKPTFFKPRNLFPSLPKTPSFLSLHGTKHSLFAIGPDGK 60

Query: 48  FYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPP 107
           FYP  +D+DPPEAPEDTAHGVSK++Q+H QA++ARK QE+DFK NQST+L AIAD +  P
Sbjct: 61  FYPNTADNDPPEAPEDTAHGVSKWEQVHIQASRARKAQEEDFKKNQSTFLKAIADTEVNP 120

Query: 108 VNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLIKPKKREDDT-VRQGIEELEPEEVVDLE 166
            +    S+ DD FGEIDKA+ M+R E VK+GL+KPK  +  + V +G+EELEPEEVVDLE
Sbjct: 121 NSLN--SDGDDLFGEIDKAIVMERQELVKQGLLKPKDIKGSSDVMEGVEELEPEEVVDLE 178

Query: 167 EIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLD-SSFDLDFDS 225
           EIDEL GL V+  D +++G      S  FDV +   S K      G  LD  SFDLDFDS
Sbjct: 179 EIDELTGLTVIDTDSDEDG------SSGFDVGVGEKSGK---SNAGASLDEKSFDLDFDS 229

Query: 226 FGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVG 285
            GK +  IVEPKF+MSLAELLDESKVVPVSV GDLEVEITGIQ DSRVVSAGDLFVC VG
Sbjct: 230 IGKLKVNIVEPKFRMSLAELLDESKVVPVSVLGDLEVEITGIQDDSRVVSAGDLFVCRVG 289

Query: 286 RKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
            KTDGHLYLSEADKRGAVAVVASKE+DIEETLGCKALVIVEDTN VLP     F
Sbjct: 290 MKTDGHLYLSEADKRGAVAVVASKEVDIEETLGCKALVIVEDTNAVLPALAAAF 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452306|ref|XP_004143900.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Cucumis sativus] gi|449495779|ref|XP_004159942.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Cucumis sativus]

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 218/346 (63%), Positives = 259/346 (74%), Gaps = 29/346 (8%)

Query: 17  NFPPKPFISFPPKRFNFI----------SLRTLK-----AIGPDGKFYPTPSDDDPPEAP 61
            F P P I  P   F FI          ++R L+     AIGPDGKFYP P+DDDPPEAP
Sbjct: 6   TFLPFPLILSPRSNFPFIRPQFHRQYLPAIRILRPSVPSAIGPDGKFYPDPADDDPPEAP 65

Query: 62  EDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNT---GDVSEQDD 118
           ED+ HGVSKFQQI+RQAA+ARK QE+DFK +QSTYL+AIADV+D P N       S  DD
Sbjct: 66  EDSGHGVSKFQQIYRQAARARKIQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDD 125

Query: 119 FFGEIDKAVAMKRDEYVKKGLIKPKKR-----EDDTVRQGIEELEPEEVVDLEEIDELQG 173
            FGEIDKA+A+KR E+VK+GL+KP  +     E D + +GI+ELE EEV DLEEI+EL+G
Sbjct: 126 LFGEIDKAIALKRKEFVKQGLLKPNPKKEKVGEKDEI-EGIDELETEEVADLEEINELRG 184

Query: 174 LRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARI 233
           L V+SED + E  +D+      D N+ A   +     + L   +SFD+DFDS+GK +ARI
Sbjct: 185 LTVISEDVDVEEDEDEDGPRNLDDNVSAIGGE-----DELSSFNSFDVDFDSYGKVKARI 239

Query: 234 VEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLY 293
           VEPKFKM+LAELLDESKVVPVSV+G+LE+EITGIQHDSRVV+AGDLFVCCVGR+TDGHLY
Sbjct: 240 VEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRVVTAGDLFVCCVGRETDGHLY 299

Query: 294 LSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
           L+EADKRGAVAVVASKEIDIEETLGCKALV+VEDTN VLP     F
Sbjct: 300 LTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASF 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528442|ref|XP_003532812.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Glycine max]

 Score =  334 bits (857), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/336 (58%), Positives = 238/336 (70%), Gaps = 39/336 (11%)

Query: 11  TFKFHHNFPPKPFISFPPKR---FNFISLRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHG 67
           T K  H   P    S P  R   + F+ +R  +AIGPDGKFYP+P+DDDPPEA ED++HG
Sbjct: 20  TVKLQHFRKPCTCSSTPFFRLLSYPFLHVRAPRAIGPDGKFYPSPADDDPPEADEDSSHG 79

Query: 68  VSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAV 127
            S FQQI RQA +AR+ +EDD+K NQSTYL AIADV+D P N    S +DD FGEIDKA+
Sbjct: 80  FSTFQQIQRQAERARQIEEDDYKKNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKAL 139

Query: 128 AMKRDEYVKKGLIKPKK-REDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGL 186
           A+KR E+V +GL++P   ++D      ++EL+P+E+ DL EI+ LQGL            
Sbjct: 140 ALKRKEFVSQGLLQPNPPKQDPLPVAAVDELQPDELGDLAEIERLQGL------------ 187

Query: 187 DDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS---FDLDFDSFGKSRARIVEPKFKMSLA 243
                          T+D     GNG + +S+   F+ DFDS+GK++ RIVE KFKMSLA
Sbjct: 188 ---------------TAD-----GNGNISNSTESPFEFDFDSYGKTKVRIVEGKFKMSLA 227

Query: 244 ELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
           ELLDESKVVPVSV GDLE+EITGIQHDSR+VS+GDLFVCCVG KTDGHL+LSEADKRGAV
Sbjct: 228 ELLDESKVVPVSVSGDLEIEITGIQHDSRIVSSGDLFVCCVGSKTDGHLFLSEADKRGAV 287

Query: 304 AVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF 339
           AVVASKEIDIE+TLGCKALVIVEDTN VLP     F
Sbjct: 288 AVVASKEIDIEDTLGCKALVIVEDTNAVLPALAASF 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840127|ref|XP_002887945.1| PDE316 [Arabidopsis lyrata subsp. lyrata] gi|297333786|gb|EFH64204.1| PDE316 [Arabidopsis lyrata subsp. lyrata]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 193/352 (54%), Positives = 241/352 (68%), Gaps = 43/352 (12%)

Query: 1   MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLKAIGPDGK-FYPTPSDD 55
           M F+F  P   F        +F  KP +  P   F+  S     A GP  +  YP P+DD
Sbjct: 1   MAFTFLSPNPVFLSLTGTTSSFSYKPVL-LP---FSRNSRNLTVAAGPARRNSYPNPADD 56

Query: 56  DPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSE 115
           DPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D      D  E
Sbjct: 57  DPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDEE 116

Query: 116 QD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQ--------------GIEELEPE 160
              D F +ID+A++MKR E+VK+GL+KP   +  ++++               ++EL+ E
Sbjct: 117 SGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKKIGEEGDEEEGDVTDVVDELDEE 176

Query: 161 EVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSSFD 220
           EVVDL+EID+L GL  +S DEED  +D++   G   +N      K K+ G+    D  F+
Sbjct: 177 EVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEIGS----DHQFE 221

Query: 221 LDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLF 280
            D D FG+S+ RIVEPKFKMSLAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGDLF
Sbjct: 222 FDLDDFGESKVRIVEPKFKMSLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLF 281

Query: 281 VCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
           VCCVG ++    +LSEADKRGAVAVVASKEIDIE+TLGCKALVIVEDTN VL
Sbjct: 282 VCCVGSES----FLSEADKRGAVAVVASKEIDIEDTLGCKALVIVEDTNAVL 329

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511484|ref|XP_003524456.1| PREDICTED: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase-like [Glycine max]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 196/320 (61%), Positives = 234/320 (73%), Gaps = 36/320 (11%)

Query: 22  PFISFPPKRFNFIS-LRTLKAIGPDGKFYPTPSDDDPPEAPEDTAHGVSKFQQIHRQAAK 80
           PF  FP   + F+  +R  +AIGPDGKFYP+P+DDDPPEA ED++HG S FQQI RQA +
Sbjct: 36  PF--FPSFSYPFVVFVRAPRAIGPDGKFYPSPADDDPPEADEDSSHGFSTFQQIQRQAQR 93

Query: 81  ARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVSEQDDFFGEIDKAVAMKRDEYVKKGLI 140
           AR+ +E+D+K NQSTYL AIADV+D P N    S +DD FGEIDKA+A+KR E+V +GL+
Sbjct: 94  ARQIEEEDYKNNQSTYLAAIADVEDAPDNAPFDSSEDDLFGEIDKALALKRKEFVSQGLL 153

Query: 141 KPKK-REDDTVRQGIEELEPEEVVDLEEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNL 199
           +P   ++D      ++EL+P+E+ DLEEI+ LQGL                         
Sbjct: 154 QPNPPKQDQLPVAAVDELQPDELGDLEEIERLQGL------------------------- 188

Query: 200 DATSDKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGD 259
             T D     GNG   DS F+ DFDS+GKS+ RIVE KFKM+LAELLDESKVVPVSV GD
Sbjct: 189 --TGD-----GNGSSTDSPFEFDFDSYGKSKVRIVEGKFKMTLAELLDESKVVPVSVSGD 241

Query: 260 LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGC 319
           LE+EITGIQHDSR+VS+GDLFVCCVGRKTDGHL+LSEADKRGAVAVVASKEIDIE+TLGC
Sbjct: 242 LEIEITGIQHDSRIVSSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEIDIEDTLGC 301

Query: 320 KALVIVEDTNLVLPHWLPLF 339
           KALVIVEDTN VLP     F
Sbjct: 302 KALVIVEDTNAVLPALAASF 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254313|ref|NP_176555.4| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana] gi|332196011|gb|AEE34132.1| Mur-ligase, Mur-ligase-C and Mur-ligase-M domain-containing protein [Arabidopsis thaliana]

 Score =  295 bits (756), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 190/354 (53%), Positives = 237/354 (66%), Gaps = 47/354 (13%)

Query: 1   MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLK-AIGPDGK-FYPTPSD 54
           M F+F  P   F        +F  KP +  P  R    + RTL  A GP  +  YP P+D
Sbjct: 1   MAFTFLSPHPVFLSLTGTTSSFSYKPVL-LPFSR----NSRTLTVAAGPARRNSYPNPAD 55

Query: 55  DDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVS 114
           DDPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D      D  
Sbjct: 56  DDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDE 115

Query: 115 EQD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDL-------- 165
           E   D F +ID+A++MKR E+VK+GL+KP   +  ++++ I E   EE  D+        
Sbjct: 116 ESGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKK-IGEEGNEEEGDVTDDVDELD 174

Query: 166 -------EEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS 218
                  +EID+L GL  +S DEED  +D++   G   +N      K K+ G+    D  
Sbjct: 175 EEEVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEFGS----DHQ 219

Query: 219 FDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGD 278
           F+ D D FG+S+ARIVEPKFKM LAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGD
Sbjct: 220 FEFDLDDFGESKARIVEPKFKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGD 279

Query: 279 LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
           LFVCC+G +     +LSEADKRGAVAVVASKEIDIE+TLGC+ALVIVEDTN VL
Sbjct: 280 LFVCCLGSEN----FLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTNAVL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324934|gb|AAG52413.1|AC011622_1 putative UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; 54319-51679 [Arabidopsis thaliana]

 Score =  295 bits (755), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 190/354 (53%), Positives = 237/354 (66%), Gaps = 47/354 (13%)

Query: 1   MGFSFTIPTLTF----KFHHNFPPKPFISFPPKRFNFISLRTLK-AIGPDGK-FYPTPSD 54
           M F+F  P   F        +F  KP +  P  R    + RTL  A GP  +  YP P+D
Sbjct: 1   MAFTFLSPHPVFLSLTGTTSSFSYKPVL-LPFSR----NSRTLTVAAGPARRNSYPNPAD 55

Query: 55  DDPPEAPEDTAHGVSKFQQIHRQAAKARKRQEDDFKANQSTYLNAIADVDDPPVNTGDVS 114
           DDPPEAPED+ HGVSKFQQI RQAA+ARK +E+DF+ N++TYL+AIADV+D      D  
Sbjct: 56  DDPPEAPEDSMHGVSKFQQIQRQAARARKLEEEDFEKNRNTYLSAIADVEDAAETGRDDE 115

Query: 115 EQD-DFFGEIDKAVAMKRDEYVKKGLIKPKKREDDTVRQGIEELEPEEVVDL-------- 165
           E   D F +ID+A++MKR E+VK+GL+KP   +  ++++ I E   EE  D+        
Sbjct: 116 ESGGDLFSDIDRAISMKRSEFVKQGLLKPNPPKTASLKK-IGEEGNEEEGDVTDDVDELD 174

Query: 166 -------EEIDELQGLRVVSEDEEDEGLDDDSKSGKFDVNLDATSDKYKDKGNGLVLDSS 218
                  +EID+L GL  +S DEED  +D++   G   +N      K K+ G+    D  
Sbjct: 175 EEEVVDLDEIDKLTGLTEIS-DEED-WVDEE---GNTRIN------KKKEFGS----DHQ 219

Query: 219 FDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGD 278
           F+ D D FG+S+ARIVEPKFKM LAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGD
Sbjct: 220 FEFDLDDFGESKARIVEPKFKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGD 279

Query: 279 LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
           LFVCC+G +     +LSEADKRGAVAVVASKEIDIE+TLGC+ALVIVEDTN VL
Sbjct: 280 LFVCCLGSEN----FLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTNAVL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	348
TAIR|locus:2026699	772	MURE [Arabidopsis thaliana (ta	0.293	0.132	0.830	2.4e-62
TIGR_CMR|GSU_3074	509	GSU_3074 "UDP-N-acetylmuramoyl	0.270	0.184	0.397	1.1e-06
TIGR_CMR|BA_4053	491	BA_4053 "UDP-N-acetylmuramoyla	0.149	0.105	0.461	0.00015

TAIR|locus:2026699 MURE [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
 Identities = 88/106 (83%), Positives = 97/106 (91%)

Query:   227 GKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGR 286
             G+S+ARIVEPKFKM LAELLDESKVVP+SVYGDL+VEITGIQHDSR VSAGDLFVCC+G 
Sbjct:   228 GESKARIVEPKFKMCLAELLDESKVVPISVYGDLDVEITGIQHDSRGVSAGDLFVCCLGS 287

Query:   287 KTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
             +     +LSEADKRGAVAVVASKEIDIE+TLGC+ALVIVEDTN VL
Sbjct:   288 EN----FLSEADKRGAVAVVASKEIDIEDTLGCRALVIVEDTNAVL 329

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008360 "regulation of cell shape" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA;ISS

GO:0016874 "ligase activity" evidence=IEA;ISS

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0009295 "nucleoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009658 "chloroplast organization" evidence=RCA;IMP

GO:0010020 "chloroplast fission" evidence=IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TIGR_CMR|GSU_3074 GSU_3074 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 39/98 (39%), Positives = 53/98 (54%)

Query:   245 LLDESKVV-PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAV 303
             L D ++VV P++V GDL  EI G+  DSR V +G LF    G  +DGH +++ A +RGAV
Sbjct:     3 LEDLARVVDPIAVRGDLTREINGLYCDSRQVRSGGLFFALKGVASDGHDFIASARERGAV 62

Query:   304 AVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG 341
             AVV   E       G +  + V D  L +     LF G
Sbjct:    63 AVVLEDET--RAPCGME-WIRVGDARLAMSRMAALFYG 97

GO:0008765 "UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity" evidence=ISS

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

TIGR_CMR|BA_4053 BA_4053 "UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate ligase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query:   263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
             EIT I+ DSR V  G LFVC  G   D H +  +A  +GA A+VA + ID++
Sbjct:    22 EITSIEADSRKVKEGSLFVCMKGYTVDSHDFAKQAAAQGAAAIVAERPIDVD 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.136   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      348       270   0.00097  114 3  11 22  0.36    34
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.21u 0.09s 18.30t   Elapsed:  00:00:01
  Total cpu time:  18.21u 0.09s 18.30t   Elapsed:  00:00:01
  Start:  Mon May 20 22:49:23 2013   End:  Mon May 20 22:49:24 2013

GO:0009252 "peptidoglycan biosynthetic process" evidence=ISS

GO:0016881 "acid-amino acid ligase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	348
PRK00139	460	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-gluta	6e-17
pfam01225	79	pfam01225, Mur_ligase, Mur ligase family, catalyti	9e-16
TIGR01143	417	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--	2e-11
COG0770	451	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide sy	2e-11
TIGR01085	464	TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide sy	9e-11
COG0769	475	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synt	6e-10
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	2e-07
PRK11929	958	PRK11929, PRK11929, putative bifunctional UDP-N-ac	3e-07
PRK10773	453	PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D	4e-06
PRK11930	822	PRK11930, PRK11930, putative bifunctional UDP-N-ac	2e-05
PRK14093	479	PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-g	2e-04

>gnl|CDD|234660 PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional

 Score = 81.3 bits (202), Expect = 6e-17
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 16/94 (17%)

Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
            M L +LL               VEITG+ +DSR V  GDLFV   G K DG  ++++A 
Sbjct: 3   SMKLRDLLAP-------------VEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAI 49

Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
             GA AVVA  + +    +    ++IV D    L
Sbjct: 50  ANGAAAVVAEADGEAGTGV---PVIIVPDLRKAL 80

Length = 460

>gnl|CDD|216373 pfam01225, Mur_ligase, Mur ligase family, catalytic domain

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
           EI  I  DSR +S G LF+   G + DG  ++  A   GAVAVV  +  D  E    K  
Sbjct: 1   EIHFIGIDSRGMSPGALFLALKGYRVDGSDFIESAIAAGAVAVVGERAADNPEVEAAKVP 60

Query: 323 VI-VEDTNLVL 332
            I V D    L
Sbjct: 61  GIPVIDRREAL 71

This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC, MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and MurF catalyze consecutive steps in the synthesis of peptidoglycan. Peptidoglycan consists of a sheet of two sugar derivatives, with one of these N-acetylmuramic acid attaching to a small pentapeptide. The pentapeptide is is made of L-alanine, D-glutamic acid, Meso-diaminopimelic acid and D-alanyl alanine. The peptide moiety is synthesised by successively adding these amino acids to UDP-N-acetylmuramic acid. MurC transfers the L-alanine, MurD transfers the D-glutamate, MurE transfers the diaminopimelic acid, and MurF transfers the D-alanyl alanine. This family also includes Folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate. Length = 79

>gnl|CDD|233291 TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 269 HDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDT 328
            DSR +  GDLF+   G + DGH ++ +A   GAVAVV  +E+  +  L     ++V+DT
Sbjct: 1   TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVVVDREVGPDNGL---PQILVDDT 57

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 417

>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 5/90 (5%)

Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
            ++L EL D   ++  ++ G   V ++G+  DSR V  GDLFV   G + DGH ++ +A 
Sbjct: 2   LLTLDELAD---ILGGALVGADPVVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQAL 58

Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDT 328
             GA AV+ ++ +          +++V DT
Sbjct: 59  AAGAAAVLVARPVLPPA--IPLVVLLVLDT 86

Length = 451

>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 24/50 (48%), Positives = 32/50 (64%)

Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID 312
           E+TG+  DSR V  GDLFV   G   DGH ++ +A   GAVAVV  +++D
Sbjct: 3   EVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVERDVD 52

Most members of this family are EC 6.3.2.13, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase. An exception is Staphylococcus aureus, in which diaminopimelate is replaced by lysine in the peptidoglycan and MurE is EC 6.3.2.7. The Mycobacteria, part of the closest neighboring branch outside of the low-GC Gram-positive bacteria, use diaminopimelate. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 464

>gnl|CDD|223840 COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

 Score = 60.0 bits (146), Expect = 6e-10
 Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKAL 322
             TG+  DSR V  GDLFV   G K DGH +++ A   GAVAVV   E DI+       +
Sbjct: 9   APTGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVV--EKDIKLAEAGVPV 66

Query: 323 VIVEDTNLVL 332
           ++V  TN  L
Sbjct: 67  IVVTGTNGKL 76

Length = 475

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
              ++ DSR V  GDLFV C G  +DG  ++ +A  RGA AV+   E   ++     ALV
Sbjct: 29  TADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVLVEAEG-EDQVAAADALV 87

Query: 324 I 324
           +
Sbjct: 88  L 88

Length = 958

>gnl|CDD|237025 PRK11929, PRK11929, putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 31/132 (23%), Positives = 46/132 (34%), Gaps = 13/132 (9%)

Query: 204 DKYKDKGNGLVLDSSFDLDFDSFGKSRARIVEPKFKMSLAELLDESKVVPVSVYGDLEVE 263
           + Y++ G        FD   D     RA +      +                  +    
Sbjct: 475 ETYQEIGGR---KLFFD---DREWARRALLARISSTLIKLRAAKGGSNSLQ---INSLPH 525

Query: 264 ITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALV 323
              +  DSR V  G+LFV   G   DGH YL +A   GA A V  +++     +    +V
Sbjct: 526 AGAVSTDSRSVGRGELFVALRGENFDGHDYLPQAFAAGACAAVVERQVA---DVDLPQIV 582

Query: 324 IVEDTNLVLPHW 335
            V+DT   L   
Sbjct: 583 -VDDTRAALGRL 593

Length = 958

>gnl|CDD|182718 PRK10773, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)

Query: 256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE 315
           + G  ++ I  +  D+R V+ G LFV   G + D H +  +A   GA A++ S+ +DI+ 
Sbjct: 17  LQGA-DITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGAGALLVSRPLDID- 74

Query: 316 TLGCKALVIVEDTNLVL 332
                 LV V+DT L  
Sbjct: 75  ---LPQLV-VKDTRLAF 87

Length = 453

>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)

Query: 257 YGDLEVEITGIQHDSRVVSAGD--LFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE 314
            GD +  I  I  DSR +S  +  LF    G + DGH Y+ E  ++G    V S+E   E
Sbjct: 17  LGDKDAIIDQILTDSRSLSFPENTLFFALKGERNDGHRYIQELYEKGVRNFVVSEEKHPE 76

Query: 315 ETLGCKALVIVEDT 328
           E+      + V+D 
Sbjct: 77  ESYPDANFLKVKDP 90

Length = 822

>gnl|CDD|184501 PRK14093, PRK14093, UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGA-VAVVASKEIDIEET 316
           G L  ++TGI  DSR ++ GD +    G   DGH +++ A K GA +AVV   + D    
Sbjct: 22  GALPRDVTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALKAGAALAVVERAQRD---K 78

Query: 317 LGCKA-LVIVED 327
               A L++V+D
Sbjct: 79  FAADAPLLVVDD 90

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	348
PRK00139	460	murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-d	99.71
PRK14093	479	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminop	99.67
PRK10773	453	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	99.67
PF01225	83	Mur_ligase: Mur ligase family, catalytic domain Th	99.66
TIGR01085	464	murE UDP-N-acetylmuramyl-tripeptide synthetase. A	99.64
PRK14022	481	UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine l	99.62
PRK11930	822	putative bifunctional UDP-N-acetylmuramoyl-tripept	99.61
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	99.59
TIGR01143	417	murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-a	99.58
PRK11929	958	putative bifunctional UDP-N-acetylmuramoylalanyl-D	99.49
COG0770	451	MurF UDP-N-acetylmuramyl pentapeptide synthase [Ce	99.46
COG0769	475	MurE UDP-N-acetylmuramyl tripeptide synthase [Cell	98.99
PF04613	72	LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-a	94.5
COG1044	338	LpxD UDP-3-O-[3-hydroxymyristoyl]	92.62
PRK00892	343	lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-ac	92.57
TIGR01853	324	lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosam	89.99

>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional

Probab=99.71  E-value=3.5e-17  Score=162.91  Aligned_cols=92  Identities=38%  Similarity=0.484  Sum_probs=78.3

Q ss_pred             cccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhh
Q 043376          237 KFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET  316 (348)
Q Consensus       237 ~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~  316 (348)
                      |+.|.|.++++.             +.|++|++|||+|++|+||||++|.++|||+||.+|+++||+++|+++....   
T Consensus         1 ~~~~~~~~~~~~-------------~~i~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~~~---   64 (460)
T PRK00139          1 MASMKLRDLLAP-------------VEITGLTYDSRKVKPGDLFVALPGHKVDGRDFIAQAIANGAAAVVAEADGEA---   64 (460)
T ss_pred             CccchHHHHhcC-------------CceeEEEeeccCcCCCCEEEEeCCCcCcHHHHHHHHHHCCCEEEEEcCcccc---
Confidence            355678887762             3578999999999999999999999999999999999999999999864210   


Q ss_pred             cCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          317 LGCKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       317 ~~~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      ...+|+|+|+|+++||+.||++||++|.
T Consensus        65 ~~~~~~i~V~d~~~al~~la~~~~~~~~   92 (460)
T PRK00139         65 GTGVPVIIVPDLRKALALLAAAFYGHPS   92 (460)
T ss_pred             CCCceEEEECCHHHHHHHHHHHHhcChh
Confidence            0135899999999999999999998884

>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional

Probab=99.67  E-value=2.3e-16  Score=158.29  Aligned_cols=100  Identities=23%  Similarity=0.284  Sum_probs=80.8

Q ss_pred             cccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcC
Q 043376          239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG  318 (348)
Q Consensus       239 ~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~  318 (348)
                      .|++.+|++.+++.   +.+.....|++|++|||+|++|+||||++|.++|||+||.+|+++||++||+++.... ....
T Consensus         6 ~~~~~~i~~~~~~~---~~~~~~~~i~~i~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~~~v~~~~~~~-~~~~   81 (479)
T PRK14093          6 LWTSDAMAEAMGAT---RSGALPRDVTGISIDSRTLAPGDAYFAIKGDVHDGHAFVAAALKAGAALAVVERAQRD-KFAA   81 (479)
T ss_pred             ccCHHHHHHHhCCe---ecCCCCCceeEEEeecCCCCCCCEEEEeccCcCChHHHHHHHHHcCCcEEEEeccccc-ccCC
Confidence            47889998876542   2222245789999999999999999999999999999999999999999999863210 0002


Q ss_pred             cceEEEeCCHHHHHHHHHHHHhhh
Q 043376          319 CKALVIVEDTNLVLPHWLPLFIGI  342 (348)
Q Consensus       319 ~ipvIvV~DtRkALg~LAAaFYg~  342 (348)
                      .+|+|+|+|++++|+.||++||++
T Consensus        82 ~~~~i~V~d~~~al~~la~~~~~~  105 (479)
T PRK14093         82 DAPLLVVDDVLAALRDLGRAARAR  105 (479)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHHh
Confidence            368999999999999999988865

>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed

Probab=99.67  E-value=2.5e-16  Score=156.74  Aligned_cols=96  Identities=26%  Similarity=0.369  Sum_probs=81.1

Q ss_pred             cccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcC
Q 043376          239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG  318 (348)
Q Consensus       239 ~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~  318 (348)
                      .|++.+|++.+++.   +.+ .+..|++|++|||+|+||+||||++|.++|||+||.+|+++||.+||+++...     .
T Consensus         3 ~~~~~~l~~~~~~~---~~~-~~~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~vv~~~~~~-----~   73 (453)
T PRK10773          3 SVTLSQLADILNGE---LQG-ADITIDAVTTDTRKVTPGCLFVALKGERFDAHDFADDAKAAGAGALLVSRPLD-----I   73 (453)
T ss_pred             CCCHHHHHHHhCCc---ccC-CCeeeeEEEeeCCCCCCCcEEEEecCCCCCHHHHHHHHHHCCCeEEEEecCcC-----C
Confidence            47899999876542   222 25679999999999999999999999999999999999999999999986421     1


Q ss_pred             cceEEEeCCHHHHHHHHHHHHhhhh
Q 043376          319 CKALVIVEDTNLVLPHWLPLFIGIR  343 (348)
Q Consensus       319 ~ipvIvV~DtRkALg~LAAaFYg~P  343 (348)
                      ..|+|+|+|++.+|+.||++||+++
T Consensus        74 ~~p~i~v~d~~~al~~la~~~~~~~   98 (453)
T PRK10773         74 DLPQLVVKDTRLAFGQLAAWVRQQV   98 (453)
T ss_pred             CCCEEEECCHHHHHHHHHHHHHhcC
Confidence            3579999999999999999887654

>PF01225 Mur_ligase: Mur ligase family, catalytic domain This Prosite entry is a subset of the Pfam family

Probab=99.66  E-value=2.5e-18  Score=134.00  Aligned_cols=78  Identities=37%  Similarity=0.512  Sum_probs=66.1

Q ss_pred             eeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccc----hhh-hcCcceEEEeCCHHHHHHHHHH
Q 043376          263 EITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEID----IEE-TLGCKALVIVEDTNLVLPHWLP  337 (348)
Q Consensus       263 eItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~----~~~-~~~~ipvIvV~DtRkALg~LAA  337 (348)
                      +|++|++|||+|++|+||||++|.++|||+||.+|+++||.++++++...    ... .....++|.|+|++++|+.||+
T Consensus         1 ~i~~i~~dSr~v~~g~lF~a~~G~~~dG~~fi~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~L~~la~   80 (83)
T PF01225_consen    1 HIHGISIDSRKVSPGALFFAIKGERVDGHDFIEDAIAKGAAAVVVDKDASISPDNPEVPAADVPVIPVEDTRQALGELAA   80 (83)
T ss_dssp             EEEEEETTSGGHHHHHHHHHHTTSEEEEECSCHHHHHTT-EEEESSSGGTSTTTSHHHHHHHHTTEEEEEHHHHHHHHHH
T ss_pred             CEEEEEECcCccChhHEEEEcCCccccchhhhhHHHHCCCeEEEEcCccccccccHhHHhcCCCEEEECCHHHHHHHHHh
Confidence            47899999999999999999999999999999999999999999997651    000 0112468999999999999999


Q ss_pred             HHh
Q 043376          338 LFI  340 (348)
Q Consensus       338 aFY  340 (348)
                      +||
T Consensus        81 ~~y   83 (83)
T PF01225_consen   81 AFY   83 (83)
T ss_dssp             HHT
T ss_pred             hhC
Confidence            987

; InterPro: IPR000713 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the N-terminal domain of several stage 2 Mur ligases, including: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The N-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases C-terminal domain (see IPR004101 from INTERPRO).; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 2XJA_A 2WTZ_A 1E8C_A 3HN7_A 3EAG_A 1J6U_A 2AM2_A 2AM1_A 2F00_B 1GQY_B ....

>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase

Probab=99.64  E-value=4.6e-16  Score=154.39  Aligned_cols=80  Identities=38%  Similarity=0.590  Sum_probs=70.1

Q ss_pred             ceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHhh
Q 043376          262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIG  341 (348)
Q Consensus       262 veItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFYg  341 (348)
                      +.|++|++|||+|++|+||||++|.++|||+||.+|+++||++||+++....  ....+|+|+|+|+++||+.||++||+
T Consensus         2 ~~~~~v~~dsr~v~~g~lFval~G~~~dgh~fi~~A~~~GA~~~i~~~~~~~--~~~~~~~~~v~d~~~al~~la~~~~~   79 (464)
T TIGR01085         2 LEVTGLTLDSREVKPGDLFVAIKGTHVDGHDFIHDAIANGAVAVVVERDVDF--YVAPVPVIIVPDLRHALSSLAAAFYG   79 (464)
T ss_pred             CceeEEEecCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEcccccc--ccCCceEEEECCHHHHHHHHHHHHhC
Confidence            4688999999999999999999999999999999999999999999974321  01135899999999999999998888


Q ss_pred             hh
Q 043376          342 IR  343 (348)
Q Consensus       342 ~P  343 (348)
                      +|
T Consensus        80 ~~   81 (464)
T TIGR01085        80 HP   81 (464)
T ss_pred             Ch
Confidence            76

A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.

>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional

Probab=99.62  E-value=1.7e-15  Score=151.70  Aligned_cols=77  Identities=26%  Similarity=0.286  Sum_probs=68.1

Q ss_pred             cceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHh
Q 043376          261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFI  340 (348)
Q Consensus       261 DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFY  340 (348)
                      +..|++|++|||+|+||+||||+ |.++ ||+||++|+++||++||+++...     ..+|+|+|+|+++||+.||++||
T Consensus        31 ~~~i~~i~~DSR~v~~g~lFva~-~~~~-gh~fi~~A~~~GA~~~v~~~~~~-----~~~~~i~V~d~~~al~~la~~~~  103 (481)
T PRK14022         31 GVQFDDISYDSRTADEGTLFFAK-GAYF-KHKFLQNAITQGLKLYVSEKDYE-----VGIPQVIVPDIKKAMSLIAMEFY  103 (481)
T ss_pred             CccEEEEEecCcCCCCCCEEEEc-CCCc-hHHHHHHHHHCCCeEEEEecccC-----CCCcEEEECCHHHHHHHHHHHHh
Confidence            55799999999999999999999 6677 99999999999999999986321     13579999999999999999999


Q ss_pred             hhhc
Q 043376          341 GIRR  344 (348)
Q Consensus       341 g~Ps  344 (348)
                      ++|+
T Consensus       104 ~~p~  107 (481)
T PRK14022        104 DNPQ  107 (481)
T ss_pred             cChh
Confidence            8874

>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional

Probab=99.61  E-value=2.8e-15  Score=159.30  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=80.3

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCC--CCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhh
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVV--SAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEE  315 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkV--kpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~  315 (348)
                      |.|++.+|.+.++..   ..+..+..|++|++|||+|  ++|+||||++|.++|||+||.+|+++||++||+++......
T Consensus         1 ~~~~~~~~~~~~~~~---~~~~~~~~i~~i~~DSR~v~~~~g~lFval~G~~~DGh~fi~~A~~~GA~~iv~~~~~~~~~   77 (822)
T PRK11930          1 MSYTLESISGILGAE---GLGDKDAIIDQILTDSRSLSFPENTLFFALKGERNDGHRYIQELYEKGVRNFVVSEEKHPEE   77 (822)
T ss_pred             CcccHHHHHHHhCCe---eccCCCceeCEEEecCCccCCCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEeccccccc
Confidence            467888888866532   1222256799999999999  99999999999999999999999999999999975311100


Q ss_pred             hcCcceEEEeCCHHHHHHHHHHHHhh
Q 043376          316 TLGCKALVIVEDTNLVLPHWLPLFIG  341 (348)
Q Consensus       316 ~~~~ipvIvV~DtRkALg~LAAaFYg  341 (348)
                      ....+|+|+|+|+++||+.||++||.
T Consensus        78 ~~~~~~~i~V~d~~~al~~la~~~~~  103 (822)
T PRK11930         78 SYPDANFLKVKDPLKALQELAAYHRS  103 (822)
T ss_pred             cCCCCCEEEECCHHHHHHHHHHHHHH
Confidence            01135899999999999999998875

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=99.59  E-value=3.4e-15  Score=160.39  Aligned_cols=101  Identities=29%  Similarity=0.392  Sum_probs=78.2

Q ss_pred             cccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcC
Q 043376          239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLG  318 (348)
Q Consensus       239 ~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~  318 (348)
                      ++++.+++..+.++    .|. -..|++|++|||+|+||+||||++|.++|||+||.+|+++||++||+++.........
T Consensus         9 ~~~~~~~~~~~~~~----~~~-~~~~~~i~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~v~~~~~~~~~~~~   83 (958)
T PRK11929          9 NVKLEELLQALAWL----RGC-VAATADLRLDSREVQPGDLFVACRGAASDGRAFIDQALARGAAAVLVEAEGEDQVAAA   83 (958)
T ss_pred             hhhHHHHHHHHHhh----ccc-ccccceeeeeccCCCCCCEEEEeCCCCCCHHHHHHHHHHcCCEEEEEeccccccccCC
Confidence            34555665544322    111 2358899999999999999999999999999999999999999999986421000001


Q ss_pred             cceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          319 CKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       319 ~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      .+|+|+|+|++++|+.||++||++|+
T Consensus        84 ~~~~i~V~d~~~al~~la~~~~~~p~  109 (958)
T PRK11929         84 DALVLPVADLRKALGELAARWYGRPS  109 (958)
T ss_pred             CCeEEEECCHHHHHHHHHHHHHhChh
Confidence            35899999999999999999999884

>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

Probab=99.58  E-value=3.7e-15  Score=146.34  Aligned_cols=73  Identities=30%  Similarity=0.395  Sum_probs=64.2

Q ss_pred             eccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          269 HDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       269 ~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      +|||+|+||+||||++|.++|||+||.+|+++||++||+++....   ...+|+|+|+|+++||+.||++||++|.
T Consensus         1 ~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~Ga~~~i~~~~~~~---~~~~~~i~V~d~~~al~~la~~~~~~~~   73 (417)
T TIGR01143         1 TDSRAIKPGDLFIALKGERFDGHDFVEQALAAGAVAVLVDREVGP---DNGLPQILVDDTLEALQALASAKRAKFS   73 (417)
T ss_pred             CCCCccCCCcEEEEeCCCCCCHHHHHHHHHHCCCEEEEEcccccC---CCCCCEEEECCHHHHHHHHHHHHHhhCC
Confidence            599999999999999999999999999999999999999864210   1135799999999999999999998764

This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.

>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional

Probab=99.49  E-value=5.9e-14  Score=150.88  Aligned_cols=79  Identities=29%  Similarity=0.360  Sum_probs=70.2

Q ss_pred             cceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHh
Q 043376          261 EVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFI  340 (348)
Q Consensus       261 DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFY  340 (348)
                      +..|++|++|||+|++|+||||++|.++|||+||.+|+++||++||+++....    ..+|+|+|+|++++|+.||.+||
T Consensus       523 ~~~i~~i~~dSr~v~~g~lFval~G~~~dGh~fi~~A~~~GA~~~i~~~~~~~----~~~~~i~V~d~~~al~~la~~~~  598 (958)
T PRK11929        523 LPHAGAVSTDSRSVGRGELFVALRGENFDGHDYLPQAFAAGACAAVVERQVAD----VDLPQIVVDDTRAALGRLATAWR  598 (958)
T ss_pred             CcccCeEEeeCCccCCCCEEEEecCCCCCHHHHHHHHHHcCCEEEEECCCccC----CCCCEEEeCCHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999864211    13579999999999999999888


Q ss_pred             hhh
Q 043376          341 GIR  343 (348)
Q Consensus       341 g~P  343 (348)
                      +.+
T Consensus       599 ~~~  601 (958)
T PRK11929        599 ARF  601 (958)
T ss_pred             hcC
Confidence            765

>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=1.6e-13  Score=139.08  Aligned_cols=99  Identities=29%  Similarity=0.368  Sum_probs=79.6

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      |.|++.+++..+.+   .+.+.....+++|++|||+|.+|++|+|++|.++|||+|+.+|+++||.++++++.....   
T Consensus         1 ~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~Dsr~v~~g~lF~al~G~~~Dgh~fi~~A~~~GA~a~~v~r~~~~~---   74 (451)
T COG0770           1 MLLTLDELADILGG---ALVGADPVVVSGVSIDSRKVKPGDLFVALKGERFDGHDFIEQALAAGAAAVLVARPVLPP---   74 (451)
T ss_pred             CcccHHHHHHHhCC---ccccCcccceeeEEeecccCCCCceeEEccCccccccchHHHHHhcCCEEEEEecCcCCc---
Confidence            45678888876643   233332256899999999999999999999999999999999999999999999864321   


Q ss_pred             Ccce--EEEeCCHHHHHHHHHHHHhhhhc
Q 043376          318 GCKA--LVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       318 ~~ip--vIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                       .++  ++.|.|+++||++||+ +|+..+
T Consensus        75 -~~~~~~~~V~d~~~al~~la~-~~~~~~  101 (451)
T COG0770          75 -AIPLVVLLVLDTLEALGKLAK-AYRQKF  101 (451)
T ss_pred             -ccccceEEeHHHHHHHHHHHH-HHHHhc
Confidence             224  8999999999999998 455443

>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]

Probab=98.99  E-value=5.6e-10  Score=113.95  Aligned_cols=79  Identities=39%  Similarity=0.534  Sum_probs=69.9

Q ss_pred             eeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          265 TGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       265 tgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      ++++.|||+|++|+||+|++|.++|||.|+..|+++||+||+++......  ...+|+|+|++++.+++.+|..||+.|+
T Consensus        11 ~~l~~dsr~v~~g~lf~a~~g~~~~g~~~~~~a~~~Gavav~~~~~~~~~--~~~~~vi~V~~~~~~~~~~a~~~y~~ps   88 (475)
T COG0769          11 TGLTLDSRKVKEGDLFVAKPGTKVDGHDFIAGAIAPGAVAVVVEKDIKLA--EAGVPVIVVTGTNGKLTTLALAFYGLPS   88 (475)
T ss_pred             ccceeehhhcCCCcEEEEEeccccccccchHhHhhCCCEEEEeccccccc--ccCCCEEEEcCcHHHHHHHHHHhccCcc
Confidence            78999999999999999999999999999999999999999999653111  1235689999999999999999999987


Q ss_pred             c
Q 043376          345 R  345 (348)
Q Consensus       345 n  345 (348)
                      +
T Consensus        89 ~   89 (475)
T COG0769          89 G   89 (475)
T ss_pred             c
Confidence            3

>PF04613 LpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ; InterPro: IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (2

Probab=94.50  E-value=0.048  Score=42.17  Aligned_cols=70  Identities=33%  Similarity=0.463  Sum_probs=42.2

Q ss_pred             ceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHHHHHH
Q 043376          262 VEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHWLPLF  339 (348)
Q Consensus       262 veItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~LAAaF  339 (348)
                      +.|++|..= ...++|+|=|+      +..+|+..+....|.+||+.+..... .....++|+|+|++.++++++..|
T Consensus         3 ~~I~gva~l-~~A~~~~isF~------~~~ky~~~l~~s~A~avlv~~~~~~~-~~~~~~~iiv~nP~~afa~~~~~f   72 (72)
T PF04613_consen    3 IEISGVAPL-EEAGPGDISFL------DNPKYLKELKNSKAGAVLVPEEFAEE-VPEGKALIIVDNPRLAFAKLLQLF   72 (72)
T ss_dssp             -EEEEEE-T-TT--TTEEEEE-------SSCGGGGGGG---SEEEEEHHHHTC-CCSSSEEEECS-HHHHHHHHHHHC
T ss_pred             cEEeeecCh-hhcCCCCEEEe------cCHHHHHHHHhCCCeEEEEcchhccc-CCCCccEEEECCHHHHHHHHHHhC
Confidence            445555432 23678887555      23467888888889999998753221 123468999999999999999854

3.1 from EC) catalyses an early step in lipid A biosynthesis []: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] = UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] This enzyme contains several hexapeptide repeats and forms part of the wider bacterial transferase hexapeptide repeat family. This entry represents the non-repeating region of the enzyme.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0009245 lipid A biosynthetic process; PDB: 3PMO_A 3EH0_B 2IU9_A 2IU8_B 2IUA_A.

>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]

Probab=92.62  E-value=0.32  Score=49.04  Aligned_cols=93  Identities=25%  Similarity=0.233  Sum_probs=67.6

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      ..++|.+|+..++.   .+.+..++.|+++..= -+-.+++|+|.      ++..|..+.....|.||+++...... ..
T Consensus         2 ~~~~l~~la~~~~~---e~~g~~~~~i~~va~l-~~a~~~~i~f~------~~~ky~~~l~~s~Agaviv~~~~~~~-~~   70 (338)
T COG1044           2 PSYTLAELAQQLGA---ELRGDGDRVITGVAPL-DEAQPGDISFL------ANPKYRKELKTSRAGAVIVSAKDAAF-AP   70 (338)
T ss_pred             ccchHHHHHHhhCc---EEecCCceeeeecchh-hhcCcccceee------cChhhhhhcccCcccEEEecHHHHhc-cc
Confidence            34689999987654   4566666777776543 34567887776      55689999999999999998753211 11


Q ss_pred             CcceEEEeCCHHHHHHHHHHHHhh
Q 043376          318 GCKALVIVEDTNLVLPHWLPLFIG  341 (348)
Q Consensus       318 ~~ipvIvV~DtRkALg~LAAaFYg  341 (348)
                      ...++++++++..+++.++..||.
T Consensus        71 ~~~~~Lv~~~P~~~fA~~~~~f~~   94 (338)
T COG1044          71 AKKNALVVKDPYLAFAKVAQLFYR   94 (338)
T ss_pred             CCceEEEeCCchHHHHHHHHHhcc
Confidence            234689999999999999998883

>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional

Probab=92.57  E-value=0.71  Score=45.32  Aligned_cols=95  Identities=23%  Similarity=0.262  Sum_probs=63.4

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      |+|+|++|++.++.   .+.+..+.+|++++.=. ...+|+|=|.      +...|+..+....|.++|+....... ..
T Consensus         1 ~~~~l~~i~~~~~~---~~~~~~~~~i~gva~l~-~a~~~~LsFl------~~~k~~~~l~~~~A~a~Iv~~d~~~~-~p   69 (343)
T PRK00892          1 MSLTLAELAELLGA---ELVGDGDIEITGVASLE-EAGPGQISFL------ANPKYRKQLATTKAGAVIVSPDDAEF-VP   69 (343)
T ss_pred             CCccHHHHHHHhCC---EEeCCCCceEEeecccc-cCCCCeEEEE------cCchhHHHHhccCCeEEEechhhhhh-cc
Confidence            36899999997764   34555567787766433 3366786333      22467777767888888887653211 11


Q ss_pred             CcceEEEeCCHHHHHHHHHHHHhhhh
Q 043376          318 GCKALVIVEDTNLVLPHWLPLFIGIR  343 (348)
Q Consensus       318 ~~ipvIvV~DtRkALg~LAAaFYg~P  343 (348)
                      ....+|.+.|++.++..+...||..+
T Consensus        70 ~~~~~i~~~~p~~~~~~~~~~~~~~~   95 (343)
T PRK00892         70 AGNALLVVKNPYLAFARLAQLFDPPA   95 (343)
T ss_pred             CCceEEEeCCHHHHHHHHHHHhcccc
Confidence            23357899999999999998776443

>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase

Probab=89.99  E-value=1.3  Score=43.65  Aligned_cols=78  Identities=22%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             ccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhcCcceEEEeCCHHHHHHHH
Q 043376          256 VYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTNLVLPHW  335 (348)
Q Consensus       256 l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~~~ipvIvV~DtRkALg~L  335 (348)
                      +.++.+.+|++++.=- ...+|+|=|+.      ..+|++.+....|.++|+.+.....  ....++|+|+|++.+++++
T Consensus        10 ~~g~~~~~i~~~~~~~-~a~~~~l~f~~------~~k~~~~l~~~~a~aviv~~~~~~~--~~~~~~~~v~~p~~~~~~~   80 (324)
T TIGR01853        10 LKGNGDIVITGVAPLE-KAKANHITFLA------NPKYLKHLKSSQAGAVIVSPDDQGL--PAKCAALVVKDPYLAFAKV   80 (324)
T ss_pred             EeCCCCceEEcccChh-hCCCCeEEEEe------CHHHHHHHhhcCCcEEEecchhhcc--cCcceEEEECCHHHHHHHH
Confidence            3455567777765433 35788876662      3579999999999999997653211  1223688999999999999


Q ss_pred             HHHHhhh
Q 043376          336 LPLFIGI  342 (348)
Q Consensus       336 AAaFYg~  342 (348)
                      ...||..
T Consensus        81 ~~~~~~~   87 (324)
T TIGR01853        81 AELFDPP   87 (324)
T ss_pred             HHHhccc
Confidence            9977544

This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	348
1e8c_A	498	Structure Of Mure The Udp-N-Acetylmuramyl Tripeptid		3e-04

>pdb|1E8C|A Chain A, Structure Of Mure The Udp-N-Acetylmuramyl Tripeptide Synthetase From E. Coli Length = 498

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 270 DSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVA 307
           DSRV +AGDLFV  VG + DG  Y+ +A  +G  A++A
Sbjct: 27  DSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIA 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	348
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	1e-20
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	7e-18
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	8e-16
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	1e-12

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A* Length = 535

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 240 MSLAELLDESKVV----PVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLS 295
           + LA L D+        P       +  +TG+   ++ VS GDLF    G  T G  ++ 
Sbjct: 34  VRLAALADQVGAALAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVG 93

Query: 296 EADKRGAVAVVASKEIDIEETLGCKALVI-VEDTNLVL 332
           +A  RGAVAV+       E        V+       VL
Sbjct: 94  DAIARGAVAVLTDPAGVAEIAGRAAVPVLVHPAPRGVL 131

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 498

 Score = 83.4 bits (207), Expect = 7e-18
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKR 300
           +L +LL  +  VP          +  +  DSRV +AGDLFV  VG + DG  Y+ +A  +
Sbjct: 4   NLRDLL--APWVP----DAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQ 57

Query: 301 GAVAVVASKEIDIEE----TLGCKALVIVEDTNLVL 332
           G  A++A  + +  +     +    ++ +   N  L
Sbjct: 58  GVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERL 93

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1 Length = 452

 Score = 77.2 bits (191), Expect = 8e-16
 Identities = 23/90 (25%), Positives = 48/90 (53%), Gaps = 9/90 (10%)

Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
            ++L++L   + ++   + G  ++ +  +  D+R ++ G LFV   G + D H +  +A 
Sbjct: 3   SVTLSQL---TDILNGELQGA-DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAK 58

Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDT 328
             GA A++ S+ +DI+        +IV+DT
Sbjct: 59  AGGAGALLVSRPLDID-----LPQLIVKDT 83

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A* Length = 454

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
           K+++ E+             + + ++   + DSR++  GDLFV   G + DGH ++  A 
Sbjct: 2   KLTIHEIAQVVGAKNDISIFE-DTQLEKAEFDSRLIGTGDLFVPLKGAR-DGHDFIETAF 59

Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDT 328
           + GA   ++ KE+           ++V+D 
Sbjct: 60  ENGAAVTLSEKEVS------NHPYILVDDV 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	348
2wtz_A	535	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-di	99.7
1e8c_A	498	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diami	99.68
1gg4_A	452	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diamino	99.58
2am1_A	454	SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl	99.54
4e79_A	357	UDP-3-O-acylglucosamine N-acyltransferase; lipopol	93.66
3eh0_A	341	UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltr	92.69
3pmo_A	372	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr;	91.54

>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*

Probab=99.70  E-value=1.9e-17  Score=166.12  Aligned_cols=107  Identities=24%  Similarity=0.253  Sum_probs=85.0

Q ss_pred             ccccccHHHHHhhccCccccccC-C-----CcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEcc
Q 043376          236 PKFKMSLAELLDESKVVPVSVYG-D-----LEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASK  309 (348)
Q Consensus       236 ~~m~MtLsELLk~i~~~~~~l~G-~-----~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe  309 (348)
                      .||.|+|.+|+..++..  ...+ .     .+..|++|++|||+|+||+||||++|.++|||+||.+|+++||++||+++
T Consensus        30 ~m~~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~i~~v~~DSR~v~~g~lFval~G~~~dGh~fi~~A~~~GA~avv~~~  107 (535)
T 2wtz_A           30 AVVGVRLAALADQVGAA--LAEGPAQRAVTEDRTVTGVTLRAQDVSPGDLFAALTGSTTHGARHVGDAIARGAVAVLTDP  107 (535)
T ss_dssp             CCCCCBHHHHHHHHTCE--ESSCC--CCSTTTCBCCEEESCGGGCCTTEEEEECBCSSCBGGGGHHHHHHTTCCEEEECH
T ss_pred             ccccccHHHHHhhcccc--ccccccccccCCCcceeeEEecCCcCCCCCEEEEeccccccHHHHHHHHHHCCCeEEEEec
Confidence            35668999999876531  1111 1     25679999999999999999999999999999999999999999999986


Q ss_pred             ccch-hhhcCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          310 EIDI-EETLGCKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       310 ~~~~-~~~~~~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      .... ......+|+|.|+|++++|+.||++||++|.
T Consensus       108 ~~~~~~~~~~~~~~i~v~d~~~aL~~la~~~~~~p~  143 (535)
T 2wtz_A          108 AGVAEIAGRAAVPVLVHPAPRGVLGGLAATVYGHPS  143 (535)
T ss_dssp             HHHHHHCSCCSSCEEECSSSHHHHHHHHHHHTTCGG
T ss_pred             CcccccccCCCceEEEECCHHHHHHHHHHHHhcCcc
Confidence            3210 0000146899999999999999999999885

>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=99.68  E-value=8.8e-17  Score=159.39  Aligned_cols=98  Identities=26%  Similarity=0.345  Sum_probs=79.6

Q ss_pred             cHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccch----hhh
Q 043376          241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDI----EET  316 (348)
Q Consensus       241 tLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~----~~~  316 (348)
                      +|.+|+..+..     .+. +..|++|++|||+|+||+||||++|.++|||+||.+|+++||++||+++....    ...
T Consensus         4 ~~~~l~~~~~~-----~~~-~~~i~~v~~DSR~v~~g~lFval~G~~~DGh~fi~~A~~~GA~avv~~~~~~~~~~e~~~   77 (498)
T 1e8c_A            4 NLRDLLAPWVP-----DAP-SRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE   77 (498)
T ss_dssp             BHHHHHTTTCT-----TCC-CCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEE
T ss_pred             hHHHHHhhccc-----CCC-CceeeeEEeeCcCCCCCCEEEEecCCcCCHHHHHHHHHHCCCeEEEEcCccccccccccc
Confidence            47788764321     233 66799999999999999999999999999999999999999999999975310    000


Q ss_pred             cCcceEEEeCCHHHHHHHHHHHHhhhhc
Q 043376          317 LGCKALVIVEDTNLVLPHWLPLFIGIRR  344 (348)
Q Consensus       317 ~~~ipvIvV~DtRkALg~LAAaFYg~Ps  344 (348)
                      ...+|+|.|+|++++|+.||++||++|.
T Consensus        78 ~~~~~~i~V~d~~~aL~~la~~~~~~p~  105 (498)
T 1e8c_A           78 MHGVPVIYLSQLNERLSALAGRFYHEPS  105 (498)
T ss_dssp             ETTEEEEEETTHHHHHHHHHHHHTTCGG
T ss_pred             cCCccEEEECCHHHHHHHHHHHHhCCCc
Confidence            0136899999999999999999999875

>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1

Probab=99.58  E-value=2.8e-15  Score=146.98  Aligned_cols=97  Identities=25%  Similarity=0.359  Sum_probs=81.8

Q ss_pred             cccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhh
Q 043376          237 KFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET  316 (348)
Q Consensus       237 ~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~  316 (348)
                      ||.|+|++|+..+++.   +.+. +..|++|++|||+|++|+||||++|.++|||+|+.+|+++||.+||+++.+.    
T Consensus         1 m~~~~l~~i~~~~~~~---~~~~-~~~i~~i~~Dsr~v~~g~lf~al~G~~~dgh~f~~~a~~~Ga~~vv~~~~~~----   72 (452)
T 1gg4_A            1 MISVTLSQLTDILNGE---LQGA-DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLD----   72 (452)
T ss_dssp             CCCEEHHHHHHHTTEE---EESC-CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCCS----
T ss_pred             CCcCcHHHHHHHhCCE---EeCC-CceEEEEEEeCCCcCCCcEEEEeCCCCCCHHHHHHHHHHcCCEEEEECCCcC----
Confidence            3458999999876532   2232 5789999999999999999999999999999999999999999999987532    


Q ss_pred             cCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376          317 LGCKALVIVEDTNLVLPHWLPLFIGI  342 (348)
Q Consensus       317 ~~~ipvIvV~DtRkALg~LAAaFYg~  342 (348)
                       ..+|+|.|+|++++|+.|+..||++
T Consensus        73 -~~~p~i~v~~~~~~l~~la~~~~~~   97 (452)
T 1gg4_A           73 -IDLPQLIVKDTRLAFGELAAWVRQQ   97 (452)
T ss_dssp             -CSSCEEEESCHHHHHHHHHHHHHHH
T ss_pred             -CCCCEEEECCHHHHHHHHHHHHhcC
Confidence             1358999999999999999977754

>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*

Probab=99.54  E-value=9.9e-15  Score=142.72  Aligned_cols=98  Identities=21%  Similarity=0.375  Sum_probs=80.5

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      |.|++.+|++.+++.. ......+..|++|++|||+|++|+||||++|. +|||+|+.+|+++||.+||+++.+.     
T Consensus         1 m~~~~~~i~~~~~~~~-~~~~~~~~~i~~i~~Dsr~v~~g~lF~al~G~-~dgh~~~~~a~~~Ga~~vv~~~~~~-----   73 (454)
T 2am1_A            1 MKLTIHEIAQVVGAKN-DISIFEDTQLEKAEFDSRLIGTGDLFVPLKGA-RDGHDFIETAFENGAAVTLSEKEVS-----   73 (454)
T ss_dssp             CCCBHHHHHHHHTCSS-CSTTSCCCBCCCEESCGGGCCTTCEECCCBSS-SBGGGGHHHHHHHTCSEEEESSCCC-----
T ss_pred             CCCcHHHHHHHhCCcc-cCCCccCceeeeEEEeCCCCCCCCEEEEccCC-cchHHHHHHHHHCCCEEEEECCCCC-----
Confidence            4578999998776421 00001156799999999999999999999999 9999999999999999999987432     


Q ss_pred             CcceEEEeCCHHHHHHHHHHHHhhhh
Q 043376          318 GCKALVIVEDTNLVLPHWLPLFIGIR  343 (348)
Q Consensus       318 ~~ipvIvV~DtRkALg~LAAaFYg~P  343 (348)
                       .+|+|.|+|++++|+.||..||++|
T Consensus        74 -~~p~i~v~~~~~al~~la~~~~~~~   98 (454)
T 2am1_A           74 -NHPYILVDDVLTAFQSLASYYLEKT   98 (454)
T ss_dssp             -SSCEEECSCHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEECCHHHHHHHHHHHHhhCC
Confidence             3579999999999999999888654

>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A

Probab=93.66  E-value=0.11  Score=49.70  Aligned_cols=93  Identities=16%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      |.|+|++|++.++.   .+.|+.+..|+++..= ....+|+|=|+      +...|...+....|.++|+....... ..
T Consensus         6 ~~~~~~~ia~~~~~---~~~g~~~~~i~~~~~~-~~a~~~~~~f~------~~~~~~~~~~~~~a~~~i~~~~~~~~-~~   74 (357)
T 4e79_A            6 QQYRLDELAHLVKG---ELIGEGSLQFSNLASL-ENAEVNHLTFV------NGEKHLDQAKVSRAGAYIVTAALKEH-LP   74 (357)
T ss_dssp             CCEEHHHHHHHTTC---EEESCTTCEECEECCT-TTCCTTEEEEC------CSGGGHHHHHTCCCSEEEECHHHHHT-CT
T ss_pred             CcccHHHHHHHhCC---EEECCCCceEEeecCh-hcCCCCcEEEe------CChhHHHHHhcCCCEEEEEcHHHhhh-cc
Confidence            56799999998764   4567667888888764 45678998665      23478888888889999987642111 11


Q ss_pred             CcceEEEeCCHHHHHHHHHHHHhh
Q 043376          318 GCKALVIVEDTNLVLPHWLPLFIG  341 (348)
Q Consensus       318 ~~ipvIvV~DtRkALg~LAAaFYg  341 (348)
                      ...++|+|+|++.++++++..|+.
T Consensus        75 ~~~~~i~~~~p~~~~~~~~~~~~~   98 (357)
T 4e79_A           75 EKDNFIIVDNPYLAFAILTHVFDK   98 (357)
T ss_dssp             TCCEEEECSCHHHHHHHHHTTSSC
T ss_pred             CCccEEEECCHHHHHHHHHHHhcc
Confidence            124689999999999999986654

>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}

Probab=92.69  E-value=0.26  Score=46.61  Aligned_cols=91  Identities=19%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             ccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhhc
Q 043376          238 FKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL  317 (348)
Q Consensus       238 m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~~  317 (348)
                      +.|+|++|++.++.   .+.|..++.|+++. .-+...+|+|-|.-..      .|...+....|.++|+.......   
T Consensus         2 ~~~~~~~~~~~~~~---~~~g~~~~~i~~~~-~~~~a~~~~i~fl~~~------~~~~~~~~~~a~~~i~~~~~~~~---   68 (341)
T 3eh0_A            2 ASIRLADLAQQLDA---ELHGDGDIVITGVA-SMQSAQTGHITFMVNP------KYREHLGLCQASAVVMTQDDLPF---   68 (341)
T ss_dssp             CCEEHHHHHHHTTC---EEESCSCCEECEEC-CTTTCCTTEEEECCCS------SGGGGGGGCCCSEEEECTTTGGG---
T ss_pred             CcccHHHHHHHhCC---EEeCCCCceEeeee-ccccCCCCeEEEeCCH------HHHHHHhhCCCCEEEECHHHhhh---
Confidence            45789999998764   44566677888854 3456789998776333      45555556677788887643211   


Q ss_pred             CcceEEEeCCHHHHHHHHHHHHhh
Q 043376          318 GCKALVIVEDTNLVLPHWLPLFIG  341 (348)
Q Consensus       318 ~~ipvIvV~DtRkALg~LAAaFYg  341 (348)
                      .....+++.|++.+++.++..|+.
T Consensus        69 ~~~~~~~~~~p~~~~~~~~~~~~~   92 (341)
T 3eh0_A           69 AKSAALVVKNPYLTYARMAQILDT   92 (341)
T ss_dssp             CCSCEEECSCHHHHHHHHHHHHCC
T ss_pred             hccceEEeCCHHHHHHHHHHHhcc
Confidence            112468999999999999987654

>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}

Probab=91.54  E-value=0.2  Score=48.34  Aligned_cols=95  Identities=17%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             cccccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchh
Q 043376          235 EPKFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE  314 (348)
Q Consensus       235 ~~~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~  314 (348)
                      |+.|.|+|++|++.++.   .+.|..++.|+++.. -+...+|+|=|.-.      ..|...+....|.++|+...... 
T Consensus        21 ~~~~~~~~~~ia~~~~~---~~~g~~~~~i~~~~~-~~~a~~~~l~fl~~------~~~~~~~~~~~a~~~i~~~~~~~-   89 (372)
T 3pmo_A           21 MSTLSYTLGQLAAHVGA---EVRGDADLPIQGLAT-LQEAGPAQLSFLAN------PQYRKYLPESRAGAVLLTAADAD-   89 (372)
T ss_dssp             EEEEEEEHHHHHHHHTC---EEESCTTCEEEEEEC-GGGCCTTSEEECCC------GGGGGGGGGCCCSEEEECHHHHT-
T ss_pred             CCCccccHHHHHHHhCC---EEECCCCceEeeecC-hhhCCCCeEEEECC------HHHHHHHhcCCCcEEEEcHHHHh-
Confidence            45577899999998764   456666788888654 45778999866522      25666666667888888753211 


Q ss_pred             hhcCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376          315 ETLGCKALVIVEDTNLVLPHWLPLFIGI  342 (348)
Q Consensus       315 ~~~~~ipvIvV~DtRkALg~LAAaFYg~  342 (348)
                       .. ....++++|+..++..+...|+..
T Consensus        90 -~~-~~~~l~~~~p~~~~~~~~~~~~~~  115 (372)
T 3pmo_A           90 -GF-AGTALVVANPYLAYASLSHLFDRK  115 (372)
T ss_dssp             -TC-SSCEEECSCHHHHHHHHHGGGCCC
T ss_pred             -hc-cccEEEECCHHHHHHHHHHHhccc
Confidence             11 235899999999999988866543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	348
d1gg4a3	98	c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D	6e-14
d1e8ca1	101	c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide	5e-13

>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]} Length = 98

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: MurE/MurF N-terminal domain
family: MurE/MurF N-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

 Score = 64.9 bits (158), Expect = 6e-14
 Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 9/94 (9%)

Query: 239 KMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEAD 298
            ++L++L   + ++   + G  ++ +  +  D+R ++ G LFV   G + D H +  +A 
Sbjct: 3   SVTLSQL---TDILNGELQGA-DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAK 58

Query: 299 KRGAVAVVASKEIDIEETLGCKALVIVEDTNLVL 332
             GA A++ S+ +DI+        +IV+DT L  
Sbjct: 59  AGGAGALLVSRPLDID-----LPQLIVKDTRLAF 87

>d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: MurE/MurF N-terminal domain
family: MurE/MurF N-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)

Query: 258 GDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETL 317
                 +  +  DSRV +AGDLFV  VG + DG  Y+ +A  +G  A++A  + +  +  
Sbjct: 13  DAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGE 72

Query: 318 GCK----ALVIVEDTNLVL 332
             +     ++ +   N  L
Sbjct: 73  IREMHGVPVIYLSQLNERL 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	348
d1gg4a3	98	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	99.9
d1e8ca1	101	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	99.88

>d1gg4a3 c.98.1.1 (A:1-98) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: MurE/MurF N-terminal domain
family: MurE/MurF N-terminal domain
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=4.7e-24  Score=171.16  Aligned_cols=96  Identities=25%  Similarity=0.404  Sum_probs=83.4

Q ss_pred             cccccHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchhhh
Q 043376          237 KFKMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEET  316 (348)
Q Consensus       237 ~m~MtLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~~~  316 (348)
                      ||.|+|++|++.+++   .+.+. +..|++|++|||+|++|+||||++|.++|||+||.+|+++||++||+++...    
T Consensus         1 M~~~~l~~i~~~~~g---~l~~~-d~~i~~is~DSR~i~~g~lFvAl~G~~~dGh~fi~~A~~~GA~aiv~~~~~~----   72 (98)
T d1gg4a3           1 MISVTLSQLTDILNG---ELQGA-DITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLD----   72 (98)
T ss_dssp             CCCEEHHHHHHHTTE---EEESC-CCEESCEESCGGGCCTTCEEECCBCSSCBTTTTHHHHHHTTCCEEEESSCCS----
T ss_pred             CccCcHHHHHHHHCC---EEECC-CeeEEEEEecCCcCCCCCEEEEEeccccChHHHHHHHHHcCCcEEEEecccC----
Confidence            678999999998764   33443 6789999999999999999999999999999999999999999999997543    


Q ss_pred             cCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376          317 LGCKALVIVEDTNLVLPHWLPLFIGI  342 (348)
Q Consensus       317 ~~~ipvIvV~DtRkALg~LAAaFYg~  342 (348)
                       ..+|+|+|+|+++||+.||+ ||+.
T Consensus        73 -~~~~~i~V~d~~~al~~lA~-~~r~   96 (98)
T d1gg4a3          73 -IDLPQLIVKDTRLAFGELAA-WVRQ   96 (98)
T ss_dssp             -CSSCEEEESCHHHHHHHHHH-HHHH
T ss_pred             -CCCCEEEECCHHHHHHHHHH-HHHh
Confidence             24689999999999999998 4544

>d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurF and HprK N-domain-like
superfamily: MurE/MurF N-terminal domain
family: MurE/MurF N-terminal domain
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=7.1e-23  Score=163.67  Aligned_cols=96  Identities=27%  Similarity=0.379  Sum_probs=80.3

Q ss_pred             cHHHHHhhccCccccccCCCcceeeeeEeccCCCCCCCEEEEecccccchhhhHHHHHHcCCcEEEEccccchh----hh
Q 043376          241 SLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSAGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIE----ET  316 (348)
Q Consensus       241 tLsELLk~i~~~~~~l~G~~DveItgIS~DSRkVkpGdLFVALkGer~DGHdFIeeAIeKGAvAVVvEe~~~~~----~~  316 (348)
                      +|++|+..+      +.+..+..|++|++|||+|++|+||||++|.++|||+||.+|+++||++||++......    ..
T Consensus         2 ~L~dLl~~~------~~~~~~~~i~~i~~DSR~v~~g~lFvAl~G~~~dG~~fi~~Ai~~GA~ail~~~~~~~~~~~~~~   75 (101)
T d1e8ca1           2 NLRDLLAPW------VPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIRE   75 (101)
T ss_dssp             BHHHHHTTT------CTTCCCCBCCCEESCGGGCCTTCEEEECBCSSCBGGGGHHHHHHTTCSEEEEECTTTCCTTCEEE
T ss_pred             cHHHHHHHh------cCCCCCcceeEEEEcCCcCCCCCEEEEecCcccCHHHHHHHHHhcCCeEEEEecccccccccccc
Confidence            588888753      13345778999999999999999999999999999999999999999999998643211    01


Q ss_pred             cCcceEEEeCCHHHHHHHHHHHHhhh
Q 043376          317 LGCKALVIVEDTNLVLPHWLPLFIGI  342 (348)
Q Consensus       317 ~~~ipvIvV~DtRkALg~LAAaFYg~  342 (348)
                      ...+++|.|+|++++|+.||++||+.
T Consensus        76 ~~~~~~i~v~~~~~~l~~lA~~fy~e  101 (101)
T d1e8ca1          76 MHGVPVIYLSQLNERLSALAGRFYHE  101 (101)
T ss_dssp             ETTEEEEEETTHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHhCc
Confidence            13468999999999999999999984