Citrus Sinensis ID: 043444

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MGSGSSRLGSGQSRTRVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQFDSVTGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPAEGVSQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIPSV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccEEEEcccccccccccccccEEccccccccEEEEEccccccccccHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHcHHHHHHHHHHccccccccccccccccccHHHHccHHccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEccccEEEEccccccccccccccccccccccccccccccccccccEEEcccccccccccEcEEcEEEEEcccccccccccccHHHHHccHHHHHHHcccccccccccccEEEEEccccccccccccHHHcccccHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccEEccccccccccEccEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccEEEEEccccccccccccccEEEHcccccccEEEEccccccHHHHcccHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgsgssrlgsgqsrtrvnrrskllpslfcgcsssrtAAVEMEeysdknevsssecrhplinaaqnpavsslvsstgtqfdsvtgassgsstavsdgtyaedgrrnggpdnhgkgladskelvppclvsddsspneyyrdrsgttastsfkdqessesvsvndsanknavngienpaegvsqigpepscsysqsledsasaevsvethesevipvhnshsdpvslasdipvafhslgeesirgalpgglgfllsnrdqdrvdgnVLHVDVVSISSnilsrgnadtdnrEARRNSRRMFRDAFSrrssrrltdsptivfstddtgdlgshdrwlldfsgdyfddgvggdsgylgrrvhslnerrrHSRSEIWERLRAGldensrrttfcpsglhpdgtcscesfvmsedsgtRAISRIVMLAEALFEVLDEIhrqpvslslsmvslpapesvvdsfpikshkkgdkaeggvepdqCYICLAeyeegdrirllpchheyhmSCVDKWLKEihgvcplcrrdvrqgatessnseipsv
Flexible Loop (DISEMBL)
mgsgssrlgsgqsrtrvnrrskllpslfcgcssSRTAAVEMEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQFDsvtgassgsstavsdgtyaedgrrnggpdNHGKGLADSKELVPPCLVSDDSSPNEYYRdrsgttastsfkdqessesvsvndsanKNAVNGIENPAEGVSQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDvvsissnilsrgnadtdnrearrnsrrmfrdafsrrssrrltdsptivfstddtgdlgsHDRWLLDFSGDYFDDGVGGDSGylgrrvhslnerrrhsrseiwerlragldensrrttfcpsglhpdgtcSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPApesvvdsfpikshkkgdkaeggvepDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRdvrqgatessnseipsv
Low Complexity Region (SEG)
MgsgssrlgsgqsrtrVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQFdsvtgassgsstavsdgtYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPAEGVSQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNsrrmfrdafsrrssrrLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPvslslsmvslPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIPSV
Disordered region (IsUnstruct)
**************************LFCGC****************************************************************************************************************************************************************************************************IPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNI**************************************IVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVH************IWERL***********TFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLS*******************************DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD****************
Disordered Region (DISOPRED)
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VMSEDSGTRAISRIVMLAEALFEVLDEIH*******************VDSFPIKSHKKGDKA*GGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR******************
Disordered Region (DISEMBL)
*****************NRRSKLLPSLFCGCSSSRTAAV**************ECRHPLINAAQNPAV***************************GTYAEDGRRNGGPDNHGKGLADSKELVPPCLVSD**********************************ANKNAVNGIENPAEGVSQIGPE*****************************HNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNI****************SRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIK***********VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR**************
Disordered Region (DISPRO)
***********************LP***C*************************************************************************************************************DRSGTTASTSFKDQ*************************************************VSVETHESEVIPVH**************************GALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNA******************F**R*****TDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSGSSRLGSGQSRTRVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQFDSVTGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPAEGVSQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIPSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q90972	381	E3 ubiquitin-protein liga	yes	no	0.131	0.183	0.448	9e-14
O54965	381	E3 ubiquitin-protein liga	yes	no	0.117	0.165	0.463	9e-14
Q66HG0	380	E3 ubiquitin-protein liga	yes	no	0.117	0.165	0.463	1e-13
Q5RCV8	381	E3 ubiquitin-protein liga	yes	no	0.117	0.165	0.463	1e-13
O43567	381	E3 ubiquitin-protein liga	yes	no	0.117	0.165	0.463	1e-13
Q0VD51	380	E3 ubiquitin-protein liga	yes	no	0.117	0.165	0.463	1e-13
Q5XIL0	349	E3 ubiquitin-protein liga	no	no	0.123	0.189	0.444	3e-13
Q91XF4	347	E3 ubiquitin-protein liga	no	no	0.123	0.190	0.444	3e-13
Q9H6Y7	350	E3 ubiquitin-protein liga	no	no	0.123	0.188	0.430	4e-13
Q7T037	757	E3 ubiquitin-protein liga	N/A	no	0.084	0.059	0.543	1e-12

>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/78 (44%), Positives = 47/78 (60%), Gaps = 8/78 (10%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV--RQGATES 526
            CP+C++ V   QG ++S
Sbjct: 277 TCPVCKQKVVPSQGDSDS 294

E3 ubiquitin-protein ligase. May play a role in controlling cell proliferation, including that of muscle cells.
Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV 519
            CP+C++ V
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV 519
            CP+C++ V
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV 519
            CP+C++ V
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV 519
            CP+C++ V
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 6/69 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 223 LKKLPVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKK 276

Query: 511 VCPLCRRDV 519
            CP+C++ V
Sbjct: 277 TCPVCKQKV 285

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P   ++KGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 213 LKQIPTHDYQKGD------EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRK 266

Query: 511 VCPLCRRDVRQG 522
            CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P   ++KGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 213 LKQIPTHDYQKGD------EYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266

Query: 511 VCPLCRRDVRQG 522
            CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 6/72 (8%)

Query: 451 VDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG 510
           +   P   ++KGD+       D C ICL EYE+GD++R+LPC H YH  CVD WL +   
Sbjct: 213 LKQIPTHDYQKGDQY------DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRK 266

Query: 511 VCPLCRRDVRQG 522
            CP+C++ V +G
Sbjct: 267 TCPICKQPVHRG 278

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%), Gaps = 1/46 (2%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           C +C+ EY EG+++R LPC HEYH+ C+D+WL E +  CP+CRR V
Sbjct: 703 CSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSE-NSTCPICRRAV 747

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
255583480	550	ring finger protein, putative [Ricinus c	0.996	0.967	0.641	1e-175
225463026	542	PREDICTED: uncharacterized protein LOC10	0.975	0.961	0.610	1e-155
147858550	542	hypothetical protein VITISV_024970 [Viti	0.975	0.961	0.610	1e-155
224088216	535	predicted protein [Populus trichocarpa]	0.925	0.923	0.592	1e-153
356562902	541	PREDICTED: uncharacterized protein LOC10	0.941	0.929	0.554	1e-135
356548563	540	PREDICTED: uncharacterized protein LOC10	0.958	0.948	0.551	1e-133
357478447	545	RING finger protein [Medicago truncatula	0.949	0.930	0.527	1e-125
449457941	541	PREDICTED: uncharacterized protein LOC10	0.973	0.961	0.495	1e-116
224144048	188	predicted protein [Populus trichocarpa]	0.342	0.973	0.802	6e-81
296084573	180	unnamed protein product [Vitis vinifera]	0.331	0.983	0.8	2e-79

>gi|255583480|ref|XP_002532498.1| ring finger protein, putative [Ricinus communis] gi|223527773|gb|EEF29874.1| ring finger protein, putative [Ricinus communis]

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 354/552 (64%), Positives = 407/552 (73%), Gaps = 20/552 (3%)

Query: 1   MGSGSSRLGSGQSRTRVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLI 60
           MGSGSSR+G   SR RVNR S    S      SS   +++ME Y D+  +SS+E    + 
Sbjct: 1   MGSGSSRMGRRPSRARVNRSSSNFFSSLLCGGSSSRDSLQMENYPDEIRMSSAEHCDLIT 60

Query: 61  NAAQNPAV-SSLVSSTGTQFDSV---TGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLA 116
           N   NPA  SS +S T T   S    TGASSGS +A S+GT AEDG RN    N  K L+
Sbjct: 61  NEIWNPAEESSFLSDTRTGSTSSVAETGASSGSKSATSEGTSAEDGFRNTETSNLQKCLS 120

Query: 117 DSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPA 176
           +SKEL+ P  VSD  S +E+ R+RS   A+TSFKDQESS  VS+N SANK+A N I+N  
Sbjct: 121 ESKELIAPYQVSDSYSRDEFCRNRSSAEATTSFKDQESSNPVSLNVSANKDAANCIDNSE 180

Query: 177 -EGVSQIGP---EPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAF 232
            +GVSQI P    PS S SQ L DS     SVETH  E     NS  DPVS  SD+PV  
Sbjct: 181 NKGVSQISPNNMHPSSSSSQELGDSRVDGTSVETHMDEATGAFNS--DPVSRRSDVPVTH 238

Query: 233 HSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRN 292
           HSLG+ES++ A+P GLGFL++NR+Q + D +VLHVDVVSISS+I S  NADT  REARRN
Sbjct: 239 HSLGDESLQEAIPSGLGFLVANREQGQGDESVLHVDVVSISSSISSSSNADTSTREARRN 298

Query: 293 SRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLG 352
           SRR+F DAFSRRSSRR  DSPTIVFSTD+  DL SH+RWLLDFSGD FDDG+GGDSGYLG
Sbjct: 299 SRRLFWDAFSRRSSRRHLDSPTIVFSTDNNDDLLSHERWLLDFSGDMFDDGIGGDSGYLG 358

Query: 353 RRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRA 412
            R+HSLN RRRHSRSEIWERLR GLDE+ RRTT CPSGLHP G CSCESF  +E++ TRA
Sbjct: 359 SRIHSLNGRRRHSRSEIWERLRGGLDEHGRRTTLCPSGLHPYGICSCESFSTTEETSTRA 418

Query: 413 -ISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEP 471
            ISRIVMLAEALFEVLDEIHRQPVSLSLSM+SLPAPESVVD+FPI++HKK DK  G  + 
Sbjct: 419 SISRIVMLAEALFEVLDEIHRQPVSLSLSMMSLPAPESVVDAFPIRNHKKEDKVVGSDDV 478

Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS---- 527
           +QCYICLAEYEEGD+IR+LPCHHEYHM+CVDKWLKEIHGVCPLCR DVRQG  + S    
Sbjct: 479 EQCYICLAEYEEGDKIRVLPCHHEYHMACVDKWLKEIHGVCPLCRGDVRQGTNDHSVSCS 538

Query: 528 -----NSEIPSV 534
                NSEIPS+
Sbjct: 539 ESSAPNSEIPSI 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463026|ref|XP_002266433.1| PREDICTED: uncharacterized protein LOC100263653 [Vitis vinifera]

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/555 (61%), Positives = 391/555 (70%), Gaps = 34/555 (6%)

Query: 1   MGSGSSRLGSGQSRTRVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLI 60
           MGS SSRLGS  SR R+NRR   L SL CG S+SR A  E+E+   +  V++ E   P+ 
Sbjct: 1   MGSSSSRLGSRSSRPRLNRR---LSSLICGGSTSR-AQPEIEDCPAELLVNAIEHNDPVT 56

Query: 61  NAAQNPAVSSLVSSTGTQFDSV----TGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLA 116
               +   S L SS GT F S       +S  SS A  D ++  D   N    N GK L+
Sbjct: 57  VEQSSTKASHLASSAGTAFTSTRTETGTSSESSSAAREDTSFIND-LSNIETSNRGKCLS 115

Query: 117 DSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVN------ 170
           +SKEL+PP LVSD+ S  + Y +RS   AS SFKD    + VS N  AN  AVN      
Sbjct: 116 ESKELIPPHLVSDEPSQVDPYWERSSNIASASFKDLHPLDPVSANARANMGAVNVHNSMD 175

Query: 171 -GIENPAEGV----SQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLA 225
               N   GV    S   PE   SYS    D ASAE     H S V  + NS S  V   
Sbjct: 176 KDRSNSGAGVIHSSSSHAPEHRASYS----DGASAE----NHVSGVSAIDNSSSVSVPAV 227

Query: 226 SDIPVAFHSLGEESIRGALPGGLGFLLSNR---DQDRVDGNVLHVDVVSISSNILSRGNA 282
           +D PV  HS G+ESI+ A+P GLG ++S+R   ++ R DG+VLHVDVVSISSNILS   A
Sbjct: 228 TDSPVTLHSQGDESIQEAIPSGLGIVVSDRADRERGRRDGSVLHVDVVSISSNILSSTTA 287

Query: 283 DTDNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDD 342
           +  NREARRNSRR+F DAFSRRSSRR +DSPTIVFSTDDT DLGSHDRWLLDFSGD+F+D
Sbjct: 288 EVSNREARRNSRRLFWDAFSRRSSRRHSDSPTIVFSTDDTDDLGSHDRWLLDFSGDFFED 347

Query: 343 GVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESF 402
           GVGGDSGYLG R+HS+NERR HSRSEIWERLR GLDE+SRRTT CP+GLHPDG CSC+SF
Sbjct: 348 GVGGDSGYLGSRIHSMNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSF 407

Query: 403 VMSEDSGTRA-ISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKK 461
           +M+E+S TRA ISRIVMLAEALFEVLDEIHRQPVSL+LSMVSLPAPESVVDSFP+K+HKK
Sbjct: 408 LMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKK 467

Query: 462 GDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            D A+ G +  QCYICLAEYEEGD+IR+LPCHHEYHMSCVDKWLKEIHGVCPLCR DVR+
Sbjct: 468 ADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRE 527

Query: 522 GAT--ESSNSEIPSV 534
           G T    SN E PS+
Sbjct: 528 GLTGGSVSNGETPSL 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858550|emb|CAN78871.1| hypothetical protein VITISV_024970 [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 339/555 (61%), Positives = 391/555 (70%), Gaps = 34/555 (6%)

Query: 1   MGSGSSRLGSGQSRTRVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLI 60
           MGS SSRLGS  SR R+NRR   L SL CG S+SR A  E+E+   +  V++ E   P+ 
Sbjct: 1   MGSSSSRLGSRSSRPRLNRR---LSSLICGGSTSR-AQPEIEDCPAELLVNAIEHNDPVT 56

Query: 61  NAAQNPAVSSLVSSTGTQFDSV----TGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLA 116
               +   S L SS GT F S       +S  SS A  D ++  D   N    N GK L+
Sbjct: 57  VEQSSTKESHLASSAGTAFTSTRTETGTSSESSSAAREDTSFIND-LSNIETSNRGKCLS 115

Query: 117 DSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVN------ 170
           +SKEL+PP LVSD+ S  + Y +RS   AS SFKD    + VS N  AN  AVN      
Sbjct: 116 ESKELIPPHLVSDEPSQVDPYWERSSNIASASFKDLHPLDPVSANARANMGAVNVHNSMD 175

Query: 171 -GIENPAEGV----SQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLA 225
               N   GV    S   PE   SYS    D ASAE     H S V  + NS S  V   
Sbjct: 176 KDRSNSGAGVIHSSSSHAPEHRASYS----DGASAE----NHVSGVSAIDNSSSVSVPAV 227

Query: 226 SDIPVAFHSLGEESIRGALPGGLGFLLSNR---DQDRVDGNVLHVDVVSISSNILSRGNA 282
           +D PV  HS G+ESI+ A+P GLG ++S+R   ++ R DG+VLHVDVVSISSNILS   A
Sbjct: 228 TDSPVTLHSQGDESIQEAIPSGLGIVVSDRADRERGRRDGSVLHVDVVSISSNILSSTTA 287

Query: 283 DTDNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDD 342
           +  NREARRNSRR+F DAFSRRSSRR +DSPTIVFSTDDT DLGSHDRWLLDFSGD+F+D
Sbjct: 288 EVSNREARRNSRRLFWDAFSRRSSRRHSDSPTIVFSTDDTDDLGSHDRWLLDFSGDFFED 347

Query: 343 GVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESF 402
           GVGGDSGYLG R+HS+NERR HSRSEIWERLR GLDE+SRRTT CP+GLHPDG CSC+SF
Sbjct: 348 GVGGDSGYLGSRIHSMNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSF 407

Query: 403 VMSEDSGTRA-ISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKK 461
           +M+E+S TRA ISRIVMLAEALFEVLDEIHRQPVSL+LSMVSLPAPESVVDSFP+K+HKK
Sbjct: 408 LMAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKK 467

Query: 462 GDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            D A+ G +  QCYICLAEYEEGD+IR+LPCHHEYHMSCVDKWLKEIHGVCPLCR DVR+
Sbjct: 468 ADTAQSGEDVAQCYICLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVRE 527

Query: 522 GAT--ESSNSEIPSV 534
           G T    SN E PS+
Sbjct: 528 GLTGGSVSNGETPSL 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088216|ref|XP_002308375.1| predicted protein [Populus trichocarpa] gi|222854351|gb|EEE91898.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 317/535 (59%), Positives = 371/535 (69%), Gaps = 41/535 (7%)

Query: 41  MEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQF----DSVTGASSGSSTAVSDG 96
           ME+Y D++ V+S E   P IN  QN A  S V S+        D+ TG SSG+S   S+G
Sbjct: 1   MEDYPDESLVNSLEQCGPFINEVQNSAEESSVVSSMVTGSSSSDTETGGSSGNSITASEG 60

Query: 97  TYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSE 156
           T+  DG RN      GK L+DSKELV    VSD  S +E  R+R+ T ASTSFK+Q+SS+
Sbjct: 61  TFVNDGYRNLDISCQGKCLSDSKELVGLDQVSDSQSHDESGRNRNITEASTSFKEQQSSD 120

Query: 157 SVSVNDSANKNAVNGIENPA-EGVSQIGPE---PSCSYSQSLEDSASAEVSVETHESEVI 212
            VS+N S N +AVNGI+N   +G SQI P    PS S    L DS S + S + H  EV 
Sbjct: 121 PVSMNVSTNMDAVNGIDNSENKGFSQIYPHIIHPSSSDPSRLGDSHSNDASFDNHMGEVT 180

Query: 213 PVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSI 272
            + NS SD V+   D+ V F    +ESI+ ++   LGFL+ NR+QDR DG+VLHVDVVSI
Sbjct: 181 DIPNSDSDSVTHRPDVRVTFRPTQDESIQDSVSSDLGFLVPNREQDRTDGSVLHVDVVSI 240

Query: 273 SSNILSRGNADTDNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWL 332
           SS+I S   +DT N EARRNSRR+F DAFSRRS RR  DSPT VFSTD+  DL SHDRWL
Sbjct: 241 SSSIYSSSTSDTSNHEARRNSRRLFWDAFSRRSFRRHVDSPTTVFSTDNNDDLESHDRWL 300

Query: 333 LDFSGDYFDDGVGGDSGYLGRRVHSLNERRRHSRS------------------------- 367
           L+FSGD+ +DG+  DS YLGRR+H LNERRRHSRS                         
Sbjct: 301 LNFSGDFLNDGIDNDSRYLGRRIHGLNERRRHSRSEILEIIRLYVDGVDCFLQSSTRPLY 360

Query: 368 -----EIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSED-SGTRAISRIVMLAE 421
                EIWERL  GLDEN RRTT CPSGLHPDGTCSCES +M+E+ +  R ISRIVMLAE
Sbjct: 361 SYCSTEIWERLHGGLDENGRRTTSCPSGLHPDGTCSCESILMTEELNAHRRISRIVMLAE 420

Query: 422 ALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEY 481
           ALFEVLDEIHRQPVSLSLSM+SLPAPES+VDSFP+K+HKK DK EG  E +QCYICLAEY
Sbjct: 421 ALFEVLDEIHRQPVSLSLSMMSLPAPESIVDSFPLKNHKKVDKVEGNDEDEQCYICLAEY 480

Query: 482 EEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS--NSEIPSV 534
           EEGD+IR+LPCHHEYHM+CVDKWLKEIHGVCPLCR DVR+GA E S  N EIPS 
Sbjct: 481 EEGDKIRVLPCHHEYHMACVDKWLKEIHGVCPLCRGDVREGANEPSIPNPEIPST 535

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562902|ref|XP_003549707.1| PREDICTED: uncharacterized protein LOC100783604 [Glycine max]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 289/521 (55%), Positives = 345/521 (66%), Gaps = 18/521 (3%)

Query: 24  LPSLFCGCSSSRTAAVEMEEYSDKNEVSSSECRHPLINAAQNPAVSSLVSSTGTQFDSV- 82
           L SL CG S+SR+   +MEE S +  V S+          Q     S +S T  +  S  
Sbjct: 27  LSSLLCGTSTSRSVH-QMEELSAELRVDSAR---DFDGEIQKDTEESSLSYTEARISSSR 82

Query: 83  ---TGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPNEYYRD 139
              T   S   T     T  E   RN   ++    L++ +ELVPP  VS   + +E Y D
Sbjct: 83  PAETATLSDMRTEFHGNTSVEGSSRNVATNSQRNCLSEHEELVPPYQVSAGHTGHESYSD 142

Query: 140 RSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPA-EGVSQIGPE---PSCSYSQSLE 195
            S  TASTSF +Q+SS+ VSVN SANK+ VN + NP    VSQ+  E   P  S  Q   
Sbjct: 143 -SSNTASTSFVEQQSSDPVSVNVSANKDLVNDVNNPVVSDVSQVSHETMRPRSSTPQEHG 201

Query: 196 DSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGFLLSNR 255
           +  S E+SVE H S  I + NS S PV+  S++        +E  R  +P GLG L+SNR
Sbjct: 202 NFGSGEISVENHTSAFISIQNS-SSPVAQVSNLAATSQLPEDEPRRETIPSGLGILVSNR 260

Query: 256 DQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNSRRMFRDAFSRRSSRRLTDSPTI 315
           ++   + +VL VDVV+ISSNILS  +AD ++ +ARRN RR+F DAFSRRSSRRL DSPTI
Sbjct: 261 ERGPGNDSVLQVDVVTISSNILSGSSADANDNDARRNGRRLFWDAFSRRSSRRLGDSPTI 320

Query: 316 VFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERR-RHSRSEIWERLR 374
           VFS     D GS DRWL+DF GD  +DGVGG SGY G R+H LNERR +HSRSEIWERLR
Sbjct: 321 VFSAGGADDSGSQDRWLVDFGGDLSNDGVGGASGYTGSRIHRLNERRMQHSRSEIWERLR 380

Query: 375 AGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRA-ISRIVMLAEALFEVLDEIHRQ 433
            G DE  R  + CP GLH DG CSCES  M+E+S T+A ISRI+MLAEALFEVLDEIHRQ
Sbjct: 381 GGFDEIGRWNS-CPLGLHADGMCSCESSPMAEESSTQASISRIIMLAEALFEVLDEIHRQ 439

Query: 434 PVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCH 493
           P SLSLSMVSLPAPESVVDS P+KSHKK D A GG + +QCYICLA+YEEGD+IR+LPC 
Sbjct: 440 PGSLSLSMVSLPAPESVVDSLPLKSHKKVDVAHGGNDAEQCYICLADYEEGDQIRVLPCF 499

Query: 494 HEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS-NSEIPS 533
           HEYHMSCVDKWLKEIHGVCPLCR +V  G TESS NSE+ S
Sbjct: 500 HEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQS 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548563|ref|XP_003542670.1| PREDICTED: uncharacterized protein LOC100783722 [Glycine max]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 290/526 (55%), Positives = 355/526 (67%), Gaps = 14/526 (2%)

Query: 16  RVNRRSKLLPSLFCGCSSSRTAAVEMEEYSDKNEVSSS-ECRHPLINAAQNPAVSSLVSS 74
           RVNR    L SL CG S+SR+   +MEE+S + +V S+ +    ++   +   +S   + 
Sbjct: 20  RVNRFR--LSSLLCGTSTSRSIH-QMEEHSSELQVDSARDFDGEILKDTEELPLSYTEAR 76

Query: 75  TGTQFDSVTGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLADSKELVPPCLVSDDSSPN 134
             +   + T  SS   T     T  E   RN   ++    LA+ +ELVPP  VS   S +
Sbjct: 77  ISSSPPAETVTSSDMRTEFHANTSVEGSSRNVATNSQRSCLAEHEELVPPYQVSAGHSGH 136

Query: 135 EYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVNGIENPAE-GVSQIGPE---PSCSY 190
           E Y D S   ASTSF +Q+SS+ VSVN SANK+ VN + NP   GVSQ+  E   P  S 
Sbjct: 137 ESYSD-SSNAASTSFVEQQSSDPVSVNVSANKDVVNDVNNPVVSGVSQVSHETMHPRSST 195

Query: 191 SQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEESIRGALPGGLGF 250
            Q   +  S E+SVE H S  I + NS S+PV+  S+I        +E  R  +P GLG 
Sbjct: 196 PQEHGNFGSGEISVENHTSAFISIQNS-SNPVAQVSNIAATSQVPEDEPRRETIPSGLGI 254

Query: 251 LLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNSRRMFRDAFSRRSSRRLT 310
           L+SNR++   + +VL VDVV+ISSNILS  +AD ++ ++RRN RR+F DAFSRRSSRRL 
Sbjct: 255 LVSNRERGPGNDSVLQVDVVTISSNILSGSSADANDYDSRRNDRRLFWDAFSRRSSRRLG 314

Query: 311 DSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSLNERR-RHSRSEI 369
           DSPTIVFS     D GS DRWL+DF GD  +DGVG  SGY+G R+H LNERR RHSRSEI
Sbjct: 315 DSPTIVFSAGGADDSGSQDRWLVDFGGDLSNDGVGAASGYMGSRIHRLNERRMRHSRSEI 374

Query: 370 WERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRA-ISRIVMLAEALFEVLD 428
           WERLR G DE  R  + CP G+H DG C CES  M+E+S TRA ISRIVMLAEALFEVLD
Sbjct: 375 WERLRGGFDEIGRWNS-CPLGIHADGMCFCESSPMAEESSTRASISRIVMLAEALFEVLD 433

Query: 429 EIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIR 488
           EIHRQP SLSLSMVSLPAPES+VDS P+KSHKK D A+ G + +QCYICLA+YEEGD+IR
Sbjct: 434 EIHRQPGSLSLSMVSLPAPESIVDSLPLKSHKKVDGADVGNDAEQCYICLADYEEGDQIR 493

Query: 489 LLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS-NSEIPS 533
           +LPC HEYHMSCVDKWLKEIHGVCPLCR +V  G+TESS NSE+ S
Sbjct: 494 VLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGSTESSANSEVQS 539

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478447|ref|XP_003609509.1| RING finger protein [Medicago truncatula] gi|355510564|gb|AES91706.1| RING finger protein [Medicago truncatula]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 283/537 (52%), Positives = 348/537 (64%), Gaps = 30/537 (5%)

Query: 16  RVNRRSKL-LPSLFCGCSSSRT-AAVEMEEYSD---------KNEVSSSECRHPLINAAQ 64
           RVN   +    S  CG S+SR+ + +E  +Y +          +E+        L  A +
Sbjct: 19  RVNNNHRFRFSSFLCGASTSRSISQMEGHQYEELQVDPARDFDDEIQKLADESTLSGAEE 78

Query: 65  NPAVSSLVSSTGTQFDSVTGASSGSSTAVSDGTYAEDGRRNGGPDNHGKGLADSKELVPP 124
                   + + T  D+ TG    ++   S G  A   +RN         L++ KELVPP
Sbjct: 79  ARFRFCAQAESSTSTDTGTGFRENATVEGSFGNVATSSQRNC--------LSEQKELVPP 130

Query: 125 CLVSDDSSPNEYYRDRSGTTASTSFKDQESSE--SVSVNDSANKNAVNGIENPA-EGVSQ 181
             VS   S  E Y D S   ASTSF +Q+SS+  S+SVNDSANK+ +N +++P   GVS+
Sbjct: 131 YQVSSGHSHPESYSD-SNNAASTSFVEQKSSDPVSLSVNDSANKDRINNVDDPVLSGVSR 189

Query: 182 IGPE---PSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLASDIPVAFHSLGEE 238
           I  E   P    SQ   +S+S E+SVE +    I +H+S S PVS AS+   A     + 
Sbjct: 190 ISHETVRPRSPISQEYGNSSSGEISVEINTDAGISIHSS-SIPVSQASNTLPASQVPEDG 248

Query: 239 SIRGALPGGLGFLLSNRDQDRVDGNVLHVDVVSISSNILSRGNADTDNREARRNSRRMFR 298
           +    LP GLG L+SNR+    +  +  VDVV+ISSNILS  N D D+ +ARRNSRR+F 
Sbjct: 249 ARHETLPSGLGILVSNREIVHGNDGLFQVDVVAISSNILSGSNGDADDHDARRNSRRLFW 308

Query: 299 DAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGVGGDSGYLGRRVHSL 358
           DAFS+RSSRRL DSPTIVFS+  T DLGSHDRW +DF  D  + GVGG SG+ G R+H L
Sbjct: 309 DAFSQRSSRRLGDSPTIVFSSGGTDDLGSHDRWHVDFDEDLSNYGVGGASGHRGSRIHRL 368

Query: 359 NERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMS-EDSGTRAISRIV 417
           NER R+SRSEIWERLR GLDE  R  T CP GLH DG CSCESF M+ E S   +ISRIV
Sbjct: 369 NERVRNSRSEIWERLRGGLDEIGRLNTSCPLGLHADGMCSCESFPMAEESSTRSSISRIV 428

Query: 418 MLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYIC 477
           MLAEALFEVLDEIHRQP S SLS  SLPAPESVVDSFP+KSHKK D A+GG + +QCYIC
Sbjct: 429 MLAEALFEVLDEIHRQPGSQSLS-TSLPAPESVVDSFPLKSHKKVDAADGGNDAEQCYIC 487

Query: 478 LAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATE-SSNSEIPS 533
           LAEYE+GD+IR+LPC HEYHMSCVDKWLKEIHGVCPLCR +V  G TE S++SE+ S
Sbjct: 488 LAEYEDGDQIRVLPCKHEYHMSCVDKWLKEIHGVCPLCRSNVCGGLTELSTDSEVQS 544

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457941|ref|XP_004146706.1| PREDICTED: uncharacterized protein LOC101215855 [Cucumis sativus] gi|449505397|ref|XP_004162456.1| PREDICTED: uncharacterized protein LOC101226984 [Cucumis sativus]

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 275/555 (49%), Positives = 355/555 (63%), Gaps = 35/555 (6%)

Query: 1   MGSGSSRLGSGQSRTRVNRRSKL-LPSLFCGCSSSRTAAVEMEEYSDKNEVSSSE---CR 56
           MGS  SRLGS  SR+R  R ++  L S FCG SSSR A  +ME+ S +  V  +E   C 
Sbjct: 1   MGSSCSRLGSRPSRSRDYRTNRSNLCSFFCGASSSR-AIHQMEDSSVQFLVHPTEHQQCN 59

Query: 57  HPLINAAQNPAVSSLVSSTGTQFDSVTGASSGSSTAVSDGT------YAEDGRRNGGPDN 110
           H  I+  Q P       + G+    +  AS+ S T+  +G        A D  RN   + 
Sbjct: 60  HN-IDEVQLP-------TNGSIRMELPNASTYSETSYENGIADGEERTAVDDPRNIDINV 111

Query: 111 HGKGLADSKELVPPCLVSDDSSPNEYYRDRSGTTASTSFKDQESSESVSVNDSANKNAVN 170
           HGK L  +KEL  P  VS D SP+E +R  S  +  TSFK  +SSE VSVN  AN++AVN
Sbjct: 112 HGKCLFQNKELASPQQVSADYSPDESHR-YSNASNGTSFKGHQSSEPVSVNILANEDAVN 170

Query: 171 GIENPAEG-----VSQIGPEPSCSYSQSLEDSASAEVSVETHESEVIPVHNSHSDPVSLA 225
           GI+   +       +++    S S +Q + +S S+ ++    E EV  +     +     
Sbjct: 171 GIDGSVDKDISPVCTKVMFAASSSTTQEVGNSCSSGLTGSIQEDEVSVIQGPFLESSPSG 230

Query: 226 SDIPVAFHSLGEESIRGALPGGLGFLLSN-RDQDRVDGNVLHVDVVSISSNILSRGNADT 284
           S +P+ F SLG+ES +   P  L  L S+ R+ D  D  + HVD+V ISSN+LS  + DT
Sbjct: 231 SGLPLTFQSLGDESSQEE-PSILDTLESDDRELDHGDVGLPHVDMVGISSNVLSTSSTDT 289

Query: 285 DNREARRNSRRMFRDAFSRRSSRRLTDSPTIVFSTDDTGDLGSHDRWLLDFSGDYFDDGV 344
            + E RRNSRR+F DAFSRRS RR  +SP  VF +++  + G  DRWLLD SGD+ DD V
Sbjct: 290 SSLEVRRNSRRLFWDAFSRRSFRRQRESP-FVFPSNNFSNTGDTDRWLLDISGDFIDDEV 348

Query: 345 GGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVM 404
            GDS +   R+H LNE++R+SRS+IWERLR+ L E S++   CPSG+HP+G CSC+SF  
Sbjct: 349 SGDSRHFSSRIHILNEQQRNSRSQIWERLRSSLTETSQQNVSCPSGIHPNGPCSCDSFSR 408

Query: 405 SEDSGTRA-ISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGD 463
            E S TRA ISRI+MLAEALFEVLDEIH QPVSL+LSMVSLPAPE+VVDSFP+K+H+K  
Sbjct: 409 IEHSSTRASISRIIMLAEALFEVLDEIHGQPVSLALSMVSLPAPEAVVDSFPLKNHEK-- 466

Query: 464 KAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523
              GG E +QCYICLAEYEEGD+IR+LPC HEYHM CVDKWLKEIHGVCPLCR DVR G+
Sbjct: 467 TTNGGDEIEQCYICLAEYEEGDKIRVLPCRHEYHMLCVDKWLKEIHGVCPLCRGDVRAGS 526

Query: 524 TESS----NSEIPSV 534
            +      N+E+P++
Sbjct: 527 NDECSVVPNNEVPTI 541

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144048|ref|XP_002325167.1| predicted protein [Populus trichocarpa] gi|222866601|gb|EEF03732.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 150/187 (80%), Positives = 166/187 (88%), Gaps = 4/187 (2%)

Query: 351 LGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGT 410
           + RR+H LNERRRHSRSEIWERLR GLDEN RRTT CPSGLHPDGTCSCESF+M+E+S  
Sbjct: 1   MSRRIHRLNERRRHSRSEIWERLRGGLDENGRRTTSCPSGLHPDGTCSCESFLMAEESSA 60

Query: 411 R-AISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGV 469
           R +ISRIVMLAEALFEVLDEIHRQPVSLSLSM+SLPAPESVVDSFP+K+HKK D+ +G  
Sbjct: 61  RGSISRIVMLAEALFEVLDEIHRQPVSLSLSMMSLPAPESVVDSFPLKNHKKLDRVKGND 120

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ-GATESS- 527
           E +QCYICLAEYEEGD+IR+LPCHHEYHM CVDKWLKEIHGVCPLCR DVR+ GA+E S 
Sbjct: 121 EDEQCYICLAEYEEGDKIRVLPCHHEYHMVCVDKWLKEIHGVCPLCRGDVREGGASEPSI 180

Query: 528 -NSEIPS 533
            N EI S
Sbjct: 181 PNPEITS 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084573|emb|CBI25594.3| unnamed protein product [Vitis vinifera]

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/180 (80%), Positives = 160/180 (88%), Gaps = 3/180 (1%)

Query: 358 LNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRA-ISRI 416
           +NERR HSRSEIWERLR GLDE+SRRTT CP+GLHPDG CSC+SF+M+E+S TRA ISRI
Sbjct: 1   MNERRWHSRSEIWERLRGGLDESSRRTTTCPTGLHPDGMCSCDSFLMAEESSTRASISRI 60

Query: 417 VMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYI 476
           VMLAEALFEVLDEIHRQPVSL+LSMVSLPAPESVVDSFP+K+HKK D A+ G +  QCYI
Sbjct: 61  VMLAEALFEVLDEIHRQPVSLALSMVSLPAPESVVDSFPLKNHKKADTAQSGEDVAQCYI 120

Query: 477 CLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT--ESSNSEIPSV 534
           CLAEYEEGD+IR+LPCHHEYHMSCVDKWLKEIHGVCPLCR DVR+G T    SN E PS+
Sbjct: 121 CLAEYEEGDKIRVLPCHHEYHMSCVDKWLKEIHGVCPLCRGDVREGLTGGSVSNGETPSL 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
TAIR|locus:2158500	546	AT5G45290 [Arabidopsis thalian	0.318	0.311	0.469	7.9e-40
UNIPROTKB|C9IY58	232	RNF13 "E3 ubiquitin-protein li	0.123	0.284	0.472	9.6e-14
UNIPROTKB|C9JCY0	233	RNF13 "E3 ubiquitin-protein li	0.123	0.283	0.472	9.6e-14
UNIPROTKB|B3KR12	262	RNF13 "cDNA FLJ33452 fis, clon	0.123	0.251	0.472	8.6e-13
UNIPROTKB|K7GLM9	238	LOC100519887 "Uncharacterized	0.191	0.428	0.317	1.5e-12
UNIPROTKB|F1NUJ3	272	RNF13 "E3 ubiquitin-protein li	0.123	0.242	0.472	1.8e-12
UNIPROTKB|I3LB70	577	LOC100738472 "Uncharacterized	0.097	0.090	0.518	1.9e-12
UNIPROTKB|F1RPK6	623	LOC100738472 "Uncharacterized	0.097	0.083	0.518	2.7e-12
UNIPROTKB|D6RIE5	230	RNF150 "RING finger protein 15	0.191	0.443	0.317	4.1e-12
RGD|1305972	349	Rnf167 "ring finger protein 16	0.131	0.200	0.434	4.2e-12

TAIR|locus:2158500 AT5G45290 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 7.9e-40, Sum P(3) = 7.9e-40
 Identities = 91/194 (46%), Positives = 108/194 (55%)

Query:   345 GGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLD-ENS--RRTTFCP-SGLHPDGTCSCE 400
             G   G L  R   L ERRR  RS++    R G   EN        C  SG    G C+C 
Sbjct:   348 GRYQGLLEHRSDFL-ERRRRIRSQVRALQRLGSRFENVAVHHDRSCVLSGQDQAGRCTCR 406

Query:   401 SFV-------MSEDSGTRA-ISRIVMLAEALFEVLDEIHRQPXXXXX------XXXXXPA 446
             +          ++++  RA ISRIV+LAEALFEVLDEIH+Q                 PA
Sbjct:   407 AVTNRGSTTATTDETNARASISRIVLLAEALFEVLDEIHQQSVVLSSQQPSVSSIGSVPA 466

Query:   447 PESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK 506
             P  VVD  PIK + K  ++E   +P QCYICL EYEE D IR LPCHHE+H +CVDKWLK
Sbjct:   467 PNDVVDLLPIKLYTKS-QSE---DPSQCYICLVEYEEADSIRTLPCHHEFHKTCVDKWLK 522

Query:   507 EIHG-VCPLCRRDV 519
             EIH  VCPLCR D+
Sbjct:   523 EIHSRVCPLCRGDI 536

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

UNIPROTKB|C9IY58 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 9.6e-14, P = 9.6e-14
 Identities = 35/74 (47%), Positives = 46/74 (62%)

Query:   455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514
             P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+
Sbjct:   108 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 161

Query:   515 CRRDV--RQGATES 526
             C++ V   QG ++S
Sbjct:   162 CKQKVVPSQGDSDS 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|C9JCY0 RNF13 "E3 ubiquitin-protein ligase RNF13" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 9.6e-14, P = 9.6e-14
 Identities = 35/74 (47%), Positives = 46/74 (62%)

Query:   455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514
             P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+
Sbjct:   108 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 161

Query:   515 CRRDV--RQGATES 526
             C++ V   QG ++S
Sbjct:   162 CKQKVVPSQGDSDS 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|B3KR12 RNF13 "cDNA FLJ33452 fis, clone BRAMY2000151, highly similar to RING finger protein 13" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 8.6e-13, P = 8.6e-13
 Identities = 35/74 (47%), Positives = 46/74 (62%)

Query:   455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514
             P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+
Sbjct:   108 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 161

Query:   515 CRRDV--RQGATES 526
             C++ V   QG ++S
Sbjct:   162 CKQKVVPSQGDSDS 175

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|K7GLM9 LOC100519887 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/104 (31%), Positives = 53/104 (50%)

Query:   416 IVMLAEALFEVLDEIHRQPXXXXXXXXXXPAPESVVDSFPIKSHKKGDKAEGGVEPDQCY 475
             I+  A  +F  + +I               A +  +     ++ KKGDK E   + D C 
Sbjct:    61 IISSAWLIFYFIQKIRYTNARDRNQRRLGDAAKKAISKLTTRTVKKGDK-ETDPDFDHCA 119

Query:   476 ICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
             +C+  Y++ D +R+LPC H +H SCVD WL E H  CP+C+ ++
Sbjct:   120 VCIESYKQNDVVRILPCKHVFHKSCVDPWLSE-HCTCPMCKLNI 162

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NUJ3 RNF13 "E3 ubiquitin-protein ligase RNF13" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 35/74 (47%), Positives = 46/74 (62%)

Query:   455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514
             P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+
Sbjct:   185 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 238

Query:   515 CRRDV--RQGATES 526
             C++ V   QG ++S
Sbjct:   239 CKQKVVPSQGDSDS 252

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|I3LB70 LOC100738472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 1.9e-12, Sum P(3) = 1.9e-12
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query:   474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV-RQGATES 526
             C +C+ EY EG+++R LPC HEYH+ C+D+WL E +  CP+CRR V   G  ES
Sbjct:   523 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVLASGNRES 575

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RPK6 LOC100738472 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 2.7e-12, Sum P(3) = 2.7e-12
 Identities = 28/54 (51%), Positives = 38/54 (70%)

Query:   474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV-RQGATES 526
             C +C+ EY EG+++R LPC HEYH+ C+D+WL E +  CP+CRR V   G  ES
Sbjct:   569 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSE-NSTCPICRRAVLASGNRES 621

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RIE5 RNF150 "RING finger protein 150" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 33/104 (31%), Positives = 52/104 (50%)

Query:   416 IVMLAEALFEVLDEIHRQPXXXXXXXXXXPAPESVVDSFPIKSHKKGDKAEGGVEPDQCY 475
             I+ LA  +F  +                  A +  +    I++ KKGDK E   + D C 
Sbjct:    52 IISLAWLVFYYIQRFRYANARDRNQRRLGDAAKKAISKLQIRTIKKGDK-ETESDFDNCA 110

Query:   476 ICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
             +C+  Y+  D +R+LPC H +H SCVD WL + H  CP+C+ ++
Sbjct:   111 VCIEGYKPNDVVRILPCRHLFHKSCVDPWLLD-HRTCPMCKMNI 153

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1305972 Rnf167 "ring finger protein 167" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 4.2e-12, P = 4.2e-12
 Identities = 33/76 (43%), Positives = 45/76 (59%)

Query:   455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPL 514
             P   ++KGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+
Sbjct:   217 PTHDYQKGD------EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPI 270

Query:   515 CRRDVRQGATESSNSE 530
             C++ V +G  +    E
Sbjct:   271 CKQPVHRGPGDEEQEE 286

GO:0000209 "protein polyubiquitination" evidence=IEA;ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045786 "negative regulation of cell cycle" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	534
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-14
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	5e-11
smart00184	40	smart00184, RING, Ring finger	3e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-09
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	4e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	4e-07
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	8e-06
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	5e-05
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	7e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 72.0 bits (177), Expect = 4e-16
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518
           D+C ICL E+E G+ + +LPC H +H  C+DKWL+     CPLCR  
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLR-SSNTCPLCRAP 46

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C ICL E+   + + LLPC H +  SC+DKWLK     CPLCR  +
Sbjct: 1   ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 3/56 (5%)

Query: 464 KAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +A+ GVE   C IC++ + + DR+R+LPC H +H+ CVDKWL      CP+CR  +
Sbjct: 319 EADKGVE---CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515
           C ICL EY +     +LPC H +  SC+ KWL+  +  CP+C
Sbjct: 1   CPICLEEYLK--DPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 469 VEPDQCYICLAEYEE--------GDR--IRLLPCHHEYHMSCVDKWLKEIHGVCPLCR 516
           +E D C IC   ++         GD   +    C H +H+ C+ +WLK     CPLCR
Sbjct: 17  IEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKT-RNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC 515
           C ICL E ++   I  LPC H +   C+  WL+  +  CPLC
Sbjct: 1   CPICLEEPKDPVTI--LPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517
           E  +C ICL      D + L PC H +   C+ ++LK+    CP+CR 
Sbjct: 1   EELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKK-KSKCPICRT 45

Length = 45

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 470 EPDQCYICLAEYE--------EGDRIRLL--PCHHEYHMSCVDKWLKE--IHGVCPLCRR 517
             D C IC   ++         GD   L+   C H +HM C+ KWL      G+CP+CR+
Sbjct: 20  SDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPMCRQ 79

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 472 DQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLKEIHGVCPLCRR 517
             C  C      GD   ++   C+H +H  C+ +WL    GVCPL R+
Sbjct: 32  GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQ 78

Length = 88

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHH-EYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           E D C ICL        +  LPC H      C  +        CP+CR+ +  
Sbjct: 1   EDDLCVICLERPRN---VVFLPCGHLCLCEECAKRLRS--KKKCPICRQPIES 48

Length = 49

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 18/75 (24%)

Query: 474 CYICLAEYEEGDRIRL----------LPCHHEYHMSCVDKWLKEIHGVCPLCRR----DV 519
           C IC+ E    D   L          LPC H  H+ C+  WL E    CP+CRR    D 
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWL-ERQQTCPICRRPVIFDQ 348

Query: 520 RQGATES---SNSEI 531
                 S    N++I
Sbjct: 349 SSPTPASPNVRNTQI 363

Length = 491

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.65
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.43
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.2
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.16
PHA02929	238	N1R/p28-like protein; Provisional	99.13
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.01
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.9
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.82
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.82
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.71
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.71
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.68
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.65
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.61
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.6
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.6
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.6
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.58
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.56
PHA02926	242	zinc finger-like protein; Provisional	98.56
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.55
PF14634	44	zf-RING_5: zinc-RING finger domain	98.53
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.42
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.4
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.22
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.17
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.14
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.14
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.11
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.06
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.99
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.97
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.97
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.91
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	97.82
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.77
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.77
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.68
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.6
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.6
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.56
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.19
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.15
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.0
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.87
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	96.85
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.5
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.21
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.19
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.1
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.99
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.99
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	95.76
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	95.72
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.67
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.56
PHA02862	156	5L protein; Provisional	95.41
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.13
KOG2660	331	consensus Locus-specific chromosome binding protei	95.12
COG5152	259	Uncharacterized conserved protein, contains RING a	95.01
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.84
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.84
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.84
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.8
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.78
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	94.67
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.66
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.59
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.31
PHA03096	284	p28-like protein; Provisional	94.16
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.7
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.31
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.16
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.11
COG5236	493	Uncharacterized conserved protein, contains RING Z	92.72
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	92.59
KOG1940	276	consensus Zn-finger protein [General function pred	92.26
PF04641	260	Rtf2: Rtf2 RING-finger	92.1
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.85
KOG4739	233	consensus Uncharacterized protein involved in syna	91.34
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	91.32
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.2
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	90.99
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.78
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	90.71
KOG1609	323	consensus Protein involved in mRNA turnover and st	90.29
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	90.16
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	89.73
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	89.19
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	89.18
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	88.86
KOG0298	1394	consensus DEAD box-containing helicase-like transc	87.37
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.33
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.21
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	85.97
KOG4367	699	consensus Predicted Zn-finger protein [Function un	85.66
KOG0825	1134	consensus PHD Zn-finger protein [General function	84.56
KOG3053	293	consensus Uncharacterized conserved protein [Funct	83.09
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	81.43
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	81.28

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.9e-16  Score=163.93  Aligned_cols=83  Identities=37%  Similarity=0.986  Sum_probs=70.2

Q ss_pred             CCChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444          445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT  524 (534)
Q Consensus       445 PApksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds  524 (534)
                      ..++..++++|...++..+.....   ..|+||||+|++|+++++|||+|.||..||++||.+.+..||+||.++.+...
T Consensus       206 r~~k~~l~~~p~~~f~~~~~~~~~---~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  206 RLIKRLLKKLPVRTFTKGDDEDAT---DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             hhHHHHHhhCCcEEeccccccCCC---ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            468899999999999877654321   68999999999999999999999999999999999744669999999988766


Q ss_pred             CCCCCC
Q 043444          525 ESSNSE  530 (534)
Q Consensus       525 e~sssE  530 (534)
                      .+...|
T Consensus       283 ~~~~~e  288 (348)
T KOG4628|consen  283 SEPVSE  288 (348)
T ss_pred             CCCccC
Confidence            555444

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.43  E-value=5.5e-14  Score=104.60  Aligned_cols=44  Identities=50%  Similarity=1.312  Sum_probs=40.2

Q ss_pred             ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444          472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR  516 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR  516 (534)
                      ++|+||++.|..++.++.|+|+|.||..||..|+++ +.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            369999999999999999999999999999999997 88999997

...

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.20  E-value=5.1e-12  Score=104.52  Aligned_cols=46  Identities=41%  Similarity=1.008  Sum_probs=36.1

Q ss_pred             CCcccccccccccc----------CCeeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444          470 EPDQCYICLAEYEE----------GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR  516 (534)
Q Consensus       470 e~~eC~ICLEeFee----------gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR  516 (534)
                      .++.|+||++.|..          +-.+...+|||.||..||.+||+. +.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            35569999999932          124455679999999999999996 78999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.4e-11  Score=125.74  Aligned_cols=51  Identities=41%  Similarity=1.090  Sum_probs=47.3

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ..+|+|||+.|..++++++|||.|.||..||++|+...+..||+||.++++
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            478999999999999999999999999999999999657899999999875

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.13  E-value=3.4e-11  Score=119.95  Aligned_cols=72  Identities=22%  Similarity=0.537  Sum_probs=52.9

Q ss_pred             ChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCe-----eEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          447 PESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDR-----IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       447 pksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~-----vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      .+..++.+|.......... ....+.+|+||++.+...+.     .++++|+|.||..||.+|++. +.+||+||..+.
T Consensus       151 ~~~~i~~lp~vl~~~e~~~-~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        151 YKKFLKTIPSVLSEYEKLY-NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             hHHHHHhcchhhhhhhhhh-cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            5667778887654433222 12346789999999875431     234569999999999999996 899999999875

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=3.9e-10  Score=117.73  Aligned_cols=51  Identities=35%  Similarity=0.910  Sum_probs=43.3

Q ss_pred             CCCccccccccc-cccC---------CeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          469 VEPDQCYICLAE-YEEG---------DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEe-Feeg---------d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ..+..|.|||++ |..+         .+++.|||||.||.+|+..|+.+ ..+||+||.+|.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCccc
Confidence            456789999999 5544         24578999999999999999996 899999999863

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.90  E-value=1.1e-09  Score=78.18  Aligned_cols=45  Identities=49%  Similarity=1.157  Sum_probs=37.2

Q ss_pred             cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444          473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV  519 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV  519 (534)
                      +|+||++.+  .+.+..++|+|.||..|+..|++.....||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  234556669999999999999996467899999764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.82  E-value=2.7e-09  Score=103.62  Aligned_cols=50  Identities=28%  Similarity=0.674  Sum_probs=40.9

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc---------------cCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE---------------IHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk---------------~~~TCPLCR~eV~~  521 (534)
                      ..+.+|+||++.+.+   .++++|||.||..||.+|+..               ....||+||.+|..
T Consensus        16 ~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~   80 (193)
T PLN03208         16 GGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE   80 (193)
T ss_pred             CCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence            346789999998864   567899999999999999852               13579999998855

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.82  E-value=2.4e-09  Score=81.82  Aligned_cols=46  Identities=33%  Similarity=0.917  Sum_probs=39.2

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      +..|.||++.+..   +..+||||. |+..|+..|++. ...||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            4679999998664   788999999 999999999995 899999999875

...

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.71  E-value=8.6e-09  Score=75.21  Aligned_cols=39  Identities=36%  Similarity=1.048  Sum_probs=33.5

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC  515 (534)
                      |+||++.+..  .++.++|||.||..||.+|++. +..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            8999999875  5578999999999999999997 8899998

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.71  E-value=9e-09  Score=88.47  Aligned_cols=51  Identities=37%  Similarity=0.941  Sum_probs=39.8

Q ss_pred             CCccccccccccc--------cCC--eeEEecCCCccchhHHHHHHhcc--CCCCcccccccc
Q 043444          470 EPDQCYICLAEYE--------EGD--RIRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFe--------egd--~vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~  520 (534)
                      .++.|.||+..|+        +|+  .++.-.|+|.||.+||.+||...  +..||+||++..
T Consensus        20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3678999999987        333  23333599999999999999962  468999999764

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=9.4e-09  Score=104.57  Aligned_cols=50  Identities=30%  Similarity=0.784  Sum_probs=43.0

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ....+|.|||+....   +..+||||+||..||..|..+ +..||+||.++.+.
T Consensus       237 ~a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  237 EATRKCSLCLENRSN---PSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPS  286 (293)
T ss_pred             CCCCceEEEecCCCC---CCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCc
Confidence            445789999998654   678999999999999999997 78899999988654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.65  E-value=1.9e-08  Score=75.43  Aligned_cols=39  Identities=38%  Similarity=0.873  Sum_probs=30.6

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHhccC---CCCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH---GVCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~---~TCPLC  515 (534)
                      |+||++.|..   ++.|+|||.|++.||..|+++..   ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999986   78999999999999999998733   359988

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.3e-08  Score=96.09  Aligned_cols=52  Identities=27%  Similarity=0.585  Sum_probs=42.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .....|+|||+.|.+... .-..|||+||+.||..-++. ...||+|+++|..+
T Consensus       129 ~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  129 EGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHK  180 (187)
T ss_pred             ccccCCCceecchhhccc-cccccchhHHHHHHHHHHHh-CCCCCCcccccchh
Confidence            334789999999986432 34679999999999999996 88999999877544

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.9e-08  Score=110.15  Aligned_cols=52  Identities=35%  Similarity=0.862  Sum_probs=45.1

Q ss_pred             CCccccccccccccCCe--eEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDR--IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~--vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+..|+||++++..+.+  +.+|||+|.||..|+..||++ ..+||+||..+...
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVLYDY  343 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhhhcc
Confidence            36789999999987655  789999999999999999996 89999999955443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=2.4e-08  Score=99.02  Aligned_cols=51  Identities=25%  Similarity=0.595  Sum_probs=41.0

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~  522 (534)
                      ....+|.|||+.-++   +++..|||+||..||.+||..  ....||+||..|...
T Consensus        45 ~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~   97 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID   97 (230)
T ss_pred             CCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence            446789999998553   567779999999999999986  234589999988654

>smart00184 RING Ring finger

Probab=98.60  E-value=3.5e-08  Score=68.05  Aligned_cols=39  Identities=46%  Similarity=1.113  Sum_probs=33.4

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLC  515 (534)
                      |+||++..   ..+..++|+|.||..|+..|++.....||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999883   3578899999999999999998446779988

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>smart00504 Ubox Modified RING finger domain

Probab=98.58  E-value=4.5e-08  Score=76.68  Aligned_cols=46  Identities=26%  Similarity=0.543  Sum_probs=40.7

Q ss_pred             ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ..|+||++.+..   +++++|||.|++.||.+|+++ +.+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKD---PVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence            469999999875   567899999999999999997 8899999988754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.56  E-value=3.2e-08  Score=84.34  Aligned_cols=54  Identities=33%  Similarity=0.738  Sum_probs=40.1

Q ss_pred             CCCccccccccccc-----------cCCe-eEEe-cCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYE-----------EGDR-IRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFe-----------egd~-vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ...+.|.||...|.           ++++ ++.. -|.|.||.+||.+||.. +..||+||++....+
T Consensus        18 i~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~~~   84 (88)
T COG5194          18 IPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVLAD   84 (88)
T ss_pred             cccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEEec
Confidence            33567888876653           3343 2333 39999999999999997 899999999876543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.56  E-value=3.3e-08  Score=97.94  Aligned_cols=52  Identities=29%  Similarity=0.774  Sum_probs=38.5

Q ss_pred             CCCccccccccccccC----C-eeEEe-cCCCccchhHHHHHHhcc-----CCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEG----D-RIRLL-PCHHEYHMSCVDKWLKEI-----HGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeeg----d-~vrvL-PCgH~FHk~CId~WLkk~-----~~TCPLCR~eV~  520 (534)
                      ..+.+|+|||+..-+.    + ...+| +|+|.||..||..|.+..     ...||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4568899999886332    1 12344 699999999999999852     245999999764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.55  E-value=3.5e-08  Score=71.91  Aligned_cols=40  Identities=45%  Similarity=1.114  Sum_probs=34.4

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHh-ccCCCCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK-EIHGVCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLk-k~~~TCPLC  515 (534)
                      |+||++.+..  ....++|||.||..||.+|++ .....||+|
T Consensus         1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999999875  335889999999999999999 346779998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.53  E-value=5.3e-08  Score=73.01  Aligned_cols=44  Identities=36%  Similarity=0.850  Sum_probs=38.6

Q ss_pred             cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444          473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR  517 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~  517 (534)
                      +|.||++.|.+.....+++|||.|+..||..+.. ....||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-KSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-CCCCCcCCCC
Confidence            4999999996666788999999999999999994 3678999985

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.42  E-value=1.3e-07  Score=100.69  Aligned_cols=49  Identities=27%  Similarity=0.653  Sum_probs=42.1

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .....|+||++.|..   +++++|||.||..||..||.. ...||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence            446789999999864   457899999999999999996 6789999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=9.5e-08  Score=84.88  Aligned_cols=67  Identities=25%  Similarity=0.576  Sum_probs=47.6

Q ss_pred             hcCCceeccCCCCcCCCCCCccccccccccc-------------cCCeeEEec-CCCccchhHHHHHHhccCCCCccccc
Q 043444          452 DSFPIKSHKKGDKAEGGVEPDQCYICLAEYE-------------EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRR  517 (534)
Q Consensus       452 dsLPv~~~k~~~~~~~~~e~~eC~ICLEeFe-------------egd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~  517 (534)
                      +.+.+++.............+.|+||...+.             .++-.+... |.|.||.+||.+||++ +..||+|.+
T Consensus        27 krF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt-r~vCPLdn~  105 (114)
T KOG2930|consen   27 KRFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT-RNVCPLDNK  105 (114)
T ss_pred             cceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh-cCcCCCcCc
Confidence            3444555555555556677889999986642             122233443 9999999999999997 899999976


Q ss_pred             cc
Q 043444          518 DV  519 (534)
Q Consensus       518 eV  519 (534)
                      +-
T Consensus       106 eW  107 (114)
T KOG2930|consen  106 EW  107 (114)
T ss_pred             ce
Confidence            53

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.5e-07  Score=79.70  Aligned_cols=52  Identities=33%  Similarity=0.869  Sum_probs=39.0

Q ss_pred             CCCccccccccccc--------cCCe-eEEec-CCCccchhHHHHHHhc--cCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYE--------EGDR-IRLLP-CHHEYHMSCVDKWLKE--IHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFe--------egd~-vrvLP-CgH~FHk~CId~WLkk--~~~TCPLCR~eV~  520 (534)
                      ..++.|-||...|.        +||. +.++. |.|.||.+||.+|+..  ....||+||++..
T Consensus        18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            34558999999986        3332 33443 9999999999999986  2356999998754

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.17  E-value=1.3e-06  Score=66.42  Aligned_cols=39  Identities=31%  Similarity=0.715  Sum_probs=23.2

Q ss_pred             ccccccccccC-CeeEEecCCCccchhHHHHHHhcc---CCCCc
Q 043444          474 CYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEI---HGVCP  513 (534)
Q Consensus       474 C~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~---~~TCP  513 (534)
                      |+||++ |... ..+++|+|||.|++.||.+|+++.   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 7543 456889999999999999999952   34576

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.1e-06  Score=95.43  Aligned_cols=50  Identities=24%  Similarity=0.464  Sum_probs=39.5

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~d  523 (534)
                      +..|||||+....   +..+.|||+||..||.++|..    ....||+||..|..++
T Consensus       186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            5689999998654   445559999999999998764    2456999999887644

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=9.9e-07  Score=89.20  Aligned_cols=51  Identities=35%  Similarity=0.784  Sum_probs=42.2

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHH-HHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDK-WLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~-WLkk~~~TCPLCR~eV~~~  522 (534)
                      ..+.+|+||++....   +..+||||+||..||.. |=++....||+||+.+...
T Consensus       213 ~~d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         213 LADYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             ccccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            447889999998664   67889999999999999 9887444599999988554

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.14  E-value=1.6e-06  Score=71.56  Aligned_cols=49  Identities=24%  Similarity=0.489  Sum_probs=38.9

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||.+.|.+   ++++||||.|.+.||..||++.+.+||+|+..+...
T Consensus         4 ~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            5679999999986   778999999999999999997678999999887654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=9.3e-07  Score=82.63  Aligned_cols=45  Identities=36%  Similarity=0.759  Sum_probs=39.5

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR  517 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~  517 (534)
                      .+...|+||++.|...   .+|||+|.||..||..|+. ....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence            4567899999999874   8999999999999999998 4678999993

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.4e-06  Score=94.16  Aligned_cols=53  Identities=30%  Similarity=0.840  Sum_probs=40.6

Q ss_pred             CCCccccccccccccC----C----------eeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEG----D----------RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeeg----d----------~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ....+|+|||..+.--    +          .-...||.|+||..|+.+|+...+-.||+||.+++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            4456899999886521    1          112459999999999999999646689999998864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.06  E-value=2.9e-06  Score=65.79  Aligned_cols=43  Identities=26%  Similarity=0.772  Sum_probs=33.7

Q ss_pred             cccccccccccCCeeEEecCC-----CccchhHHHHHHhc-cCCCCcccc
Q 043444          473 QCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCR  516 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR  516 (534)
                      .|.||++ +..++...++||.     |.||..|+.+|+.. .+.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3999999 4444555688985     89999999999976 245799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.99  E-value=2e-06  Score=89.65  Aligned_cols=49  Identities=27%  Similarity=0.655  Sum_probs=43.1

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +-..|-||.+.|..   +.+.||+|.||.-||..+|.. +..||.|+.++...
T Consensus        22 ~lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   22 DLLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHHhHHHHHhcC---ceeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence            35679999999986   678899999999999999996 89999999987654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.97  E-value=4.4e-06  Score=86.48  Aligned_cols=53  Identities=25%  Similarity=0.497  Sum_probs=39.4

Q ss_pred             Cccccccccc--cccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAE--YEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEe--Feegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      +..||||+..  +.+.-++.+-+|||.||..||..+|......||.|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4579999986  2232222233799999999999977655678999999887654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.97  E-value=1.7e-06  Score=71.51  Aligned_cols=51  Identities=24%  Similarity=0.729  Sum_probs=24.1

Q ss_pred             Cccccccccccc-cCCeeE-Ee---cCCCccchhHHHHHHhcc----------CCCCccccccccc
Q 043444          471 PDQCYICLAEYE-EGDRIR-LL---PCHHEYHMSCVDKWLKEI----------HGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFe-egd~vr-vL---PCgH~FHk~CId~WLkk~----------~~TCPLCR~eV~~  521 (534)
                      +.+|.||+..+. .++.+. +.   .|++.||..||..||...          ...||.|+.+|.-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            457999999876 333322 22   399999999999999851          1249999998853

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.91  E-value=2.7e-06  Score=97.23  Aligned_cols=51  Identities=27%  Similarity=0.800  Sum_probs=38.0

Q ss_pred             CCccccccccccccCC---eeEEec-CCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444          470 EPDQCYICLAEYEEGD---RIRLLP-CHHEYHMSCVDKWLKE-IHGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFeegd---~vrvLP-CgH~FHk~CId~WLkk-~~~TCPLCR~eV~  520 (534)
                      ...+|+||+..+..-+   .-...| |.|.||..|+.+|++. .+.+||+||.+++
T Consensus      1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3568999998875211   112223 9999999999999997 4578999997764

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=6.9e-06  Score=83.63  Aligned_cols=53  Identities=23%  Similarity=0.614  Sum_probs=42.4

Q ss_pred             CCCCccccccccccccCC-------eeEEecCCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444          468 GVEPDQCYICLAEYEEGD-------RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVR  520 (534)
Q Consensus       468 ~~e~~eC~ICLEeFeegd-------~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~  520 (534)
                      ..++..|+||-..+....       +.-.|.|+|.||..||.-|--- .+.+||.|+..|.
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            345678999998876544       6678999999999999999743 2578999988774

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.77  E-value=1.1e-05  Score=82.97  Aligned_cols=49  Identities=24%  Similarity=0.527  Sum_probs=42.3

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...+.|-||-+.|..   ....+|||.||.-||...|.. +..||+||.+.+.
T Consensus        23 Ds~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e   71 (391)
T COG5432          23 DSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE   71 (391)
T ss_pred             hhHHHhhhhhheeec---ceecccccchhHHHHHHHhcC-CCCCccccccHHh
Confidence            446789999999875   567789999999999999996 8999999997653

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.77  E-value=8.1e-06  Score=84.14  Aligned_cols=63  Identities=29%  Similarity=0.753  Sum_probs=49.5

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhc----------------------cCCCCcccccccccCCCCCC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----------------------IHGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----------------------~~~TCPLCR~eV~~~dse~s  527 (534)
                      ...+|.|||.-|..++...+.+|-|+||..|+.++|..                      ....||+||..|-.......
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~slk  193 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENSLK  193 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccccee
Confidence            35689999999999999999999999999999988852                      12359999998876654444


Q ss_pred             CCCCC
Q 043444          528 NSEIP  532 (534)
Q Consensus       528 ssE~P  532 (534)
                      --+.|
T Consensus       194 ~a~~P  198 (368)
T KOG4445|consen  194 IAEFP  198 (368)
T ss_pred             ccCCC
Confidence            44433

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=7e-06  Score=86.01  Aligned_cols=57  Identities=23%  Similarity=0.507  Sum_probs=45.3

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCCC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSN  528 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~ss  528 (534)
                      .+..|+|||.-+..  .+...-|.|.||..||.+-|+..++.||.||+.+...-....+
T Consensus        42 ~~v~c~icl~llk~--tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D   98 (381)
T KOG0311|consen   42 IQVICPICLSLLKK--TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRID   98 (381)
T ss_pred             hhhccHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence            35789999998864  2333449999999999999998889999999998776554443

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=4.2e-05  Score=80.24  Aligned_cols=55  Identities=25%  Similarity=0.594  Sum_probs=43.7

Q ss_pred             CCCccccccccccccCCeeEEecCCC-ccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHH-EYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH-~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s  527 (534)
                      +...+|.|||.+-.+   +.+|||.| ..|..|.+...-+ ++.||+||+.+..-.....
T Consensus       288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHh-hcCCCccccchHhhheecc
Confidence            346799999998665   78999999 5899999886653 7899999999876544433

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=2.5e-05  Score=82.85  Aligned_cols=49  Identities=22%  Similarity=0.791  Sum_probs=35.7

Q ss_pred             ccccccccccccCCeeEEec-CCCccchhHHHHHHhc--cCCCCcccccccc
Q 043444          472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE--IHGVCPLCRRDVR  520 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk--~~~TCPLCR~eV~  520 (534)
                      ..|.||.+-+.....+.-.. |||.||..|+..|+..  .++.||+||-.+.
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            57999955444433444444 9999999999999986  2358999994443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.56  E-value=1.7e-05  Score=89.61  Aligned_cols=56  Identities=21%  Similarity=0.398  Sum_probs=46.6

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s  527 (534)
                      ...|+||+..|.++......+|+|+||.+||..|-+ ...+||+||.++..-.....
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~v~V~eS  178 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGEVKVLES  178 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhheeeeecc
Confidence            357999999998876666778999999999999999 48999999998876554433

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=4.7e-05  Score=78.57  Aligned_cols=50  Identities=22%  Similarity=0.495  Sum_probs=40.5

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ..+|+||+....   .++.|+|+|.||..||.--.+....+|++||.+|....
T Consensus         7 ~~eC~IC~nt~n---~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    7 KKECLICYNTGN---CPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CCcceeeeccCC---cCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            568999998754   35789999999999999854443578999999997654

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.36  E-value=8.5e-05  Score=80.02  Aligned_cols=48  Identities=33%  Similarity=0.831  Sum_probs=38.0

Q ss_pred             CCccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          470 EPDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      +--.|||||+-+.+.- -++...|.|.||..|+.+|.-   .+||+||.-..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            3457999999987643 234456999999999999965   69999998655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00024  Score=75.91  Aligned_cols=49  Identities=37%  Similarity=0.874  Sum_probs=38.2

Q ss_pred             CccccccccccccC-C-eeEEecCCCccchhHHHHHHhc-cCCCCccccccc
Q 043444          471 PDQCYICLAEYEEG-D-RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDV  519 (534)
Q Consensus       471 ~~eC~ICLEeFeeg-d-~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV  519 (534)
                      ...|+||++.|... + .+..|.|||.|...||.+||.+ ....||.|..+-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            46799999998743 3 3455669999999999999965 245699997653

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00016  Score=76.17  Aligned_cols=53  Identities=30%  Similarity=0.839  Sum_probs=38.7

Q ss_pred             CCCccccccccccccCC----eeEEec-CCCccchhHHHHHHhcc------CCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGD----RIRLLP-CHHEYHMSCVDKWLKEI------HGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd----~vrvLP-CgH~FHk~CId~WLkk~------~~TCPLCR~eV~~  521 (534)
                      ..+.+|.|||+...+..    ...+|| |.|.||..||.+|-...      ...||.||.....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            34678999999876432    122345 99999999999999432      4679999986543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.00018  Score=81.34  Aligned_cols=50  Identities=18%  Similarity=0.521  Sum_probs=41.0

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ...|+.|-.-+.+   +++..|+|.||..||.+.+....+.||.|...+...|
T Consensus       643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD  692 (698)
T KOG0978|consen  643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND  692 (698)
T ss_pred             ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence            4679999977765   4556699999999999999987889999988775443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00046  Score=74.06  Aligned_cols=49  Identities=27%  Similarity=0.717  Sum_probs=42.2

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ..+.+|.||+..+..   ++.+||||.||..||++-+.+ ...||+||..+..
T Consensus        82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---PVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCC---CccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence            457899999988765   678899999999999997774 7889999999875

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.00026  Score=57.10  Aligned_cols=48  Identities=31%  Similarity=0.764  Sum_probs=36.1

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .++|.||++.-.+   .++.-|||. .|..|-.+.++..+..||+||.++..
T Consensus         7 ~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            4789999987432   234459994 78889888777568999999998753

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.50  E-value=0.0016  Score=77.77  Aligned_cols=70  Identities=23%  Similarity=0.535  Sum_probs=49.9

Q ss_pred             HHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc---------CCCCccccccc
Q 043444          449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---------HGVCPLCRRDV  519 (534)
Q Consensus       449 svIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~---------~~TCPLCR~eV  519 (534)
                      ..-.-||-..+++...++  ..++.|.||+.+--.....+.|.|+|.||..|..+-|...         -..||+|+.++
T Consensus      3466 NEE~CLPCl~Cdks~tkQ--D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~I 3543 (3738)
T KOG1428|consen 3466 NEEHCLPCLHCDKSATKQ--DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKI 3543 (3738)
T ss_pred             chhhcccccccChhhhhc--ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchh
Confidence            333456666655554432  3467899999886666678899999999999998766541         12599999876


Q ss_pred             c
Q 043444          520 R  520 (534)
Q Consensus       520 ~  520 (534)
                      .
T Consensus      3544 n 3544 (3738)
T KOG1428|consen 3544 N 3544 (3738)
T ss_pred             h
Confidence            3

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.21  E-value=0.0021  Score=68.71  Aligned_cols=52  Identities=27%  Similarity=0.675  Sum_probs=42.3

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      .+...|+||+..+.+.  +....|||.||..||..|+.. +..||.|+..+....
T Consensus        19 ~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~   70 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAE   70 (391)
T ss_pred             cccccCccccccccCC--CCCCCCCCcccccccchhhcc-CcCCcccccccchhh
Confidence            3467899999998862  222579999999999999996 899999988776543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.19  E-value=0.0018  Score=69.49  Aligned_cols=48  Identities=27%  Similarity=0.785  Sum_probs=38.3

Q ss_pred             ccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcccccccccC
Q 043444          472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVRQG  522 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~~~  522 (534)
                      ..|.||-+.=+   .+++=||||..|..|+..|-.. ...+||.||.++-..
T Consensus       370 eLCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            45999997633   3677799999999999999854 357899999987543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.10  E-value=0.0037  Score=48.17  Aligned_cols=41  Identities=37%  Similarity=0.925  Sum_probs=28.5

Q ss_pred             ccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLC  515 (534)
                      |-||++.-.+.+ ..+.||.  -   ..|..|+.+|+.. ...+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999877655 4567865  3   7899999999985 34679987

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.99  E-value=0.0028  Score=59.14  Aligned_cols=35  Identities=17%  Similarity=0.550  Sum_probs=30.0

Q ss_pred             CccccccccccccCCeeEEecCC------CccchhHHHHHH
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCH------HEYHMSCVDKWL  505 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCg------H~FHk~CId~WL  505 (534)
                      ..+|.||++.+...+-++.++|+      |.||..|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            46899999999885667778887      899999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.99  E-value=0.0038  Score=50.07  Aligned_cols=43  Identities=19%  Similarity=0.506  Sum_probs=28.8

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPL  514 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPL  514 (534)
                      ....|||.+..|++  .++...|+|.|-+..|..||++ ....||+
T Consensus        10 ~~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            35689999999874  5666789999999999999943 3456998

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.80  E-value=0.0031  Score=60.76  Aligned_cols=29  Identities=45%  Similarity=0.942  Sum_probs=27.1

Q ss_pred             CCccccccccccccCCeeEEecCCCccch
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHM  498 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk  498 (534)
                      +..+|.||||+++.++.+..|||-.+||+
T Consensus       176 dkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  176 DKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cCCcEEEEhhhccCCCceeccceEEEeec
Confidence            45689999999999999999999999997

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=95.76  E-value=0.0024  Score=52.94  Aligned_cols=46  Identities=26%  Similarity=0.613  Sum_probs=23.1

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      -..|++|.+.+.+  .+....|.|.||..||..-+.   ..||+|+.+.-.
T Consensus         7 lLrCs~C~~~l~~--pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~   52 (65)
T PF14835_consen    7 LLRCSICFDILKE--PVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWI   52 (65)
T ss_dssp             TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT---TB-SSS--B-S-
T ss_pred             hcCCcHHHHHhcC--CceeccCccHHHHHHhHHhcC---CCCCCcCChHHH
Confidence            3569999999875  334456999999999988655   359999876543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.72  E-value=0.0096  Score=61.36  Aligned_cols=53  Identities=21%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV~~~d  523 (534)
                      ..+.+|++|-+.-.  -.....+|+|.||..||..=+.- ...+||.|-.++....
T Consensus       237 t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  237 TSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence            45779999998733  34566779999999999985542 2478999988887443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.67  E-value=0.0039  Score=66.83  Aligned_cols=49  Identities=29%  Similarity=0.666  Sum_probs=39.7

Q ss_pred             CccccccccccccCC-eeEEecCCCccchhHHHHHHhc-cCCCCccccccc
Q 043444          471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKE-IHGVCPLCRRDV  519 (534)
Q Consensus       471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk-~~~TCPLCR~eV  519 (534)
                      +.-|-.|-+-|...+ ..--|||.|+||..|+...|.+ ...+||-||+-.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            567999999887554 4567999999999999999976 346799999533

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.56  E-value=0.0052  Score=52.39  Aligned_cols=32  Identities=28%  Similarity=0.725  Sum_probs=27.3

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHH
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVD  502 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId  502 (534)
                      +...|+||-..+.. ....+.||||.||..|+.
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            35679999999876 567789999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA02862 5L protein; Provisional

Probab=95.41  E-value=0.0092  Score=56.54  Aligned_cols=47  Identities=28%  Similarity=0.674  Sum_probs=35.6

Q ss_pred             CccccccccccccCCeeEEecCC-----CccchhHHHHHHhc-cCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR~eV~~  521 (534)
                      ...|-||+++-++  .  .-||.     ..-|..|+.+|++. ++..||+|+.++.-
T Consensus         2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I   54 (156)
T PHA02862          2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI   54 (156)
T ss_pred             CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence            3579999998543  2  35665     57899999999986 45679999998753

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.13  E-value=0.014  Score=62.08  Aligned_cols=49  Identities=27%  Similarity=0.558  Sum_probs=40.3

Q ss_pred             CCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          468 GVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       468 ~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ..++..|+||+..-.   ..+..||+|.=|..||.+-|.. .+.|=.|+..+.
T Consensus       419 ~sEd~lCpICyA~pi---~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  419 DSEDNLCPICYAGPI---NAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             CcccccCcceecccc---hhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            356788999996522   2457799999999999999995 889999999876

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.12  E-value=0.0056  Score=64.18  Aligned_cols=49  Identities=24%  Similarity=0.581  Sum_probs=40.0

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      -..|.+|-..|-+  ...+.-|-|.||+.||.+.|.. ...||.|...|...
T Consensus        15 ~itC~LC~GYliD--ATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   15 HITCRLCGGYLID--ATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKT   63 (331)
T ss_pred             ceehhhccceeec--chhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCc
Confidence            4679999998875  2334459999999999999997 89999998877554

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.01  E-value=0.008  Score=59.67  Aligned_cols=44  Identities=25%  Similarity=0.602  Sum_probs=37.7

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD  518 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e  518 (534)
                      ...|-||.++|+.   +++..|||.||..|..+-+++ ...|-+|-++
T Consensus       196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~  239 (259)
T COG5152         196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQK-GDECGVCGKA  239 (259)
T ss_pred             ceeehhchhhccc---hhhhhcchhHHHHHHHHHhcc-CCcceecchh
Confidence            4579999999986   667789999999999998886 7889999654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.84  E-value=0.019  Score=63.72  Aligned_cols=55  Identities=20%  Similarity=0.544  Sum_probs=41.4

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGATES  526 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~dse~  526 (534)
                      ....+|-+|-+.-++   .+...|.|.||+.||..++..    .+-+||.|-..+.-..++.
T Consensus       534 k~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  534 KGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             cCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccch
Confidence            345789999987543   567789999999999888764    3567999977776554443

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.84  E-value=0.014  Score=45.80  Aligned_cols=46  Identities=28%  Similarity=0.585  Sum_probs=23.5

Q ss_pred             ccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444          474 CYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV  519 (534)
Q Consensus       474 C~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV  519 (534)
                      |++|.+++...+. ..--+|++.++..|...-++.....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            8999999954443 223348999999998888864478899999864

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.015  Score=62.75  Aligned_cols=38  Identities=26%  Similarity=0.651  Sum_probs=33.1

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE  507 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk  507 (534)
                      .-.+|.||+++..-..-+..|||+|+||+.|+..++..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~  220 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI  220 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence            35689999999876578889999999999999999874

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.80  E-value=0.022  Score=54.61  Aligned_cols=50  Identities=22%  Similarity=0.637  Sum_probs=36.4

Q ss_pred             CCCccccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLCR~eV~~~  522 (534)
                      ..+..|-||.++..+  .  .-||.  .   .-|..|+.+|+.. +...|++|+++..-.
T Consensus         6 ~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            346789999988432  2  34755  3   5699999999986 346799999877543

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.78  E-value=0.014  Score=61.83  Aligned_cols=58  Identities=24%  Similarity=0.565  Sum_probs=44.5

Q ss_pred             CCccccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444          470 EPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s  527 (534)
                      +++-|++|++++...++ ..-.|||-..|..|....-+..+..||-||......+..+.
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~   71 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYV   71 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEE
Confidence            35569999999987764 34567999889989777665567889999998877665544

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.67  E-value=0.022  Score=57.54  Aligned_cols=52  Identities=23%  Similarity=0.605  Sum_probs=42.5

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhcc-------CCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-------HGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-------~~TCPLCR~eV~~~d  523 (534)
                      .-.|..|-..+..|+.+ .|-|-|.||..|+..|-..-       ...||.|-.+|-...
T Consensus        50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            45799999999998875 66799999999999998751       235999999886553

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.66  E-value=0.015  Score=60.74  Aligned_cols=47  Identities=28%  Similarity=0.589  Sum_probs=36.5

Q ss_pred             CccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCccc-ccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLC-RRDVR  520 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLC-R~eV~  520 (534)
                      .+.|+.|..-+..   ....| |+|.||..||..-|...-+.||.| |.+|.
T Consensus       274 ~LkCplc~~Llrn---p~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl  322 (427)
T COG5222         274 SLKCPLCHCLLRN---PMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL  322 (427)
T ss_pred             cccCcchhhhhhC---cccCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence            3679999887664   23445 999999999999887767899999 54543

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=0.025  Score=60.08  Aligned_cols=45  Identities=33%  Similarity=0.764  Sum_probs=34.9

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      .....|.||+++...   ...+||||.-|  |+.--..  ..+||+||..+.
T Consensus       303 ~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  303 PQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             CCCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            345679999999765   78899999966  7666544  466999998764

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.024  Score=57.40  Aligned_cols=48  Identities=33%  Similarity=0.751  Sum_probs=41.0

Q ss_pred             ccccccccccccCC---eeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444          472 DQCYICLAEYEEGD---RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV  519 (534)
Q Consensus       472 ~eC~ICLEeFeegd---~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV  519 (534)
                      .+|-||-++|..++   .++.|.|||.|+..|+.+-+....-.||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            57999999998764   4677889999999999999887566799999974

>PHA03096 p28-like protein; Provisional

Probab=94.16  E-value=0.023  Score=58.75  Aligned_cols=45  Identities=27%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             ccccccccccccCC----eeEEec-CCCccchhHHHHHHhcc--CCCCcccc
Q 043444          472 DQCYICLAEYEEGD----RIRLLP-CHHEYHMSCVDKWLKEI--HGVCPLCR  516 (534)
Q Consensus       472 ~eC~ICLEeFeegd----~vrvLP-CgH~FHk~CId~WLkk~--~~TCPLCR  516 (534)
                      ..|.||++......    .-..|+ |.|.||..||..|-...  ..+||.||
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            56999999866432    234566 99999999999999762  23354443

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.021  Score=59.37  Aligned_cols=45  Identities=22%  Similarity=0.535  Sum_probs=38.4

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV  519 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV  519 (534)
                      ...|-||...|..   .++..|+|.||..|...-+++ ...|++|-+..
T Consensus       241 Pf~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t  285 (313)
T KOG1813|consen  241 PFKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT  285 (313)
T ss_pred             Ccccccccccccc---chhhcCCceeehhhhcccccc-CCcceeccccc
Confidence            4569999999985   677889999999999998886 78899996654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=0.0075  Score=64.62  Aligned_cols=51  Identities=29%  Similarity=0.668  Sum_probs=44.0

Q ss_pred             CccccccccccccC-CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||.+.|... +++..+-|||.+|..||.+||.. ...||.|+.+|+..
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~-~~kl~~~~rel~~~  247 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT-KRKLPSCRRELPKN  247 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH-HHHhHHHHhhhhhh
Confidence            45799999998865 56667789999999999999997 78999999988754

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.16  E-value=0.052  Score=62.95  Aligned_cols=46  Identities=26%  Similarity=0.771  Sum_probs=34.8

Q ss_pred             CccccccccccccCCeeEE-ecCCCccchhHHHHHHhccC------CCCcccc
Q 043444          471 PDQCYICLAEYEEGDRIRL-LPCHHEYHMSCVDKWLKEIH------GVCPLCR  516 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrv-LPCgH~FHk~CId~WLkk~~------~TCPLCR  516 (534)
                      ..+|.||++.+...+.+-- -.|-|+||..||.+|-+...      -.||.|.
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq  243 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ  243 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence            5689999999886554322 23789999999999998621      1399998

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.11  E-value=0.075  Score=54.41  Aligned_cols=52  Identities=17%  Similarity=0.345  Sum_probs=43.4

Q ss_pred             CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ....|+||.+.+...-...+| ||||+|+..|+.+.++. -..||+|-.++...
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdr  272 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDR  272 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCccc
Confidence            456799999999877766666 69999999999999996 89999997766543

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=92.72  E-value=0.1  Score=55.74  Aligned_cols=48  Identities=29%  Similarity=0.638  Sum_probs=36.9

Q ss_pred             CCCCccccccccccccCCeeEEecCCCccchhHHHHH--HhccCCCCccccccc
Q 043444          468 GVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW--LKEIHGVCPLCRRDV  519 (534)
Q Consensus       468 ~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~W--Lkk~~~TCPLCR~eV  519 (534)
                      .++...|.||-+.+.   ...++||+|..|-.|..+.  |- ....||+||.+-
T Consensus        58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY-~~K~C~~CrTE~  107 (493)
T COG5236          58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALY-MQKGCPLCRTET  107 (493)
T ss_pred             ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHH-hccCCCcccccc
Confidence            345667999998765   3678999999999997662  33 267899999854

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.59  E-value=0.036  Score=57.75  Aligned_cols=43  Identities=26%  Similarity=0.661  Sum_probs=31.5

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...|.|||+.-.+   ...|+|||. -|..|-.+     -..||+||+.|.+
T Consensus       300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKR-----MNECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcc---eEEeecCcEEeehhhccc-----cccCchHHHHHHH
Confidence            5679999988554   678999994 45667332     2479999997753

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.26  E-value=0.056  Score=55.87  Aligned_cols=46  Identities=26%  Similarity=0.532  Sum_probs=38.6

Q ss_pred             CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444          471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR  517 (534)
Q Consensus       471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~  517 (534)
                      ...||||.+.+.... .+..++|||.-|..|+...... +.+||+|-+
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~-~y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE-GYTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc-CCCCCcccc
Confidence            445999999976554 5678899999999999999887 599999977

>PF04641 Rtf2: Rtf2 RING-finger

Probab=92.10  E-value=0.16  Score=51.50  Aligned_cols=53  Identities=15%  Similarity=0.370  Sum_probs=40.7

Q ss_pred             CCCccccccccccccCCeeE-EecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIR-LLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vr-vLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      .....|||+..+|......+ +.||||+|...||..-- . ...||+|-.++...+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~-~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K-SKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c-cccccccCCccccCC
Confidence            44678999999996544444 45899999999999973 2 467999988876554

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.85  E-value=0.27  Score=52.68  Aligned_cols=32  Identities=25%  Similarity=0.674  Sum_probs=24.9

Q ss_pred             CCCccchhHHHHHHhc------------cCCCCcccccccccCC
Q 043444          492 CHHEYHMSCVDKWLKE------------IHGVCPLCRRDVRQGA  523 (534)
Q Consensus       492 CgH~FHk~CId~WLkk------------~~~TCPLCR~eV~~~d  523 (534)
                      |.-.+|.+|+.+|+..            ++..||+||+.++--|
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD  354 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD  354 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence            6677899999999964            2446999999876543

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=91.34  E-value=0.091  Score=53.18  Aligned_cols=44  Identities=30%  Similarity=0.731  Sum_probs=33.0

Q ss_pred             cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      .|--|..-- .++...++.|+|+||..|...-..   ..||+||..|.
T Consensus         5 hCn~C~~~~-~~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFP-SQDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIR   48 (233)
T ss_pred             EeccccccC-CCCceeeeechhhhhhhhcccCCc---cccccccceee
Confidence            577666543 377888889999999999765322   38999999864

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=91.32  E-value=0.079  Score=40.30  Aligned_cols=42  Identities=26%  Similarity=0.659  Sum_probs=23.3

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHhccCC-CCccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG-VCPLC  515 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~-TCPLC  515 (534)
                      |.+|.+....|..-..-.|+=.+|..|+..+++.... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6788887666543222248889999999999996333 59987

; PDB: 3NW0_A 2CT0_A.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.20  E-value=0.088  Score=60.31  Aligned_cols=46  Identities=28%  Similarity=0.749  Sum_probs=36.6

Q ss_pred             ccccccccccccCCeeEEecCCCccchhHHHHHHhccCC-CCccccccccc
Q 043444          472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHG-VCPLCRRDVRQ  521 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~-TCPLCR~eV~~  521 (534)
                      ..|.||++    -+.....+|+|.||..|+..-+..... .||+||..+..
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence            67999999    245678889999999999997775333 49999986643

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=0.14  Score=50.49  Aligned_cols=33  Identities=30%  Similarity=0.937  Sum_probs=25.9

Q ss_pred             ecCCCccchhHHHHHHhcc----------CCCCcccccccccC
Q 043444          490 LPCHHEYHMSCVDKWLKEI----------HGVCPLCRRDVRQG  522 (534)
Q Consensus       490 LPCgH~FHk~CId~WLkk~----------~~TCPLCR~eV~~~  522 (534)
                      ..||.-||.-|+..||+..          -..||+|-.++.-+
T Consensus       188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            4599999999999999852          12399998887543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.78  E-value=0.25  Score=39.84  Aligned_cols=39  Identities=36%  Similarity=0.870  Sum_probs=32.1

Q ss_pred             CccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcc
Q 043444          471 PDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPL  514 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPL  514 (534)
                      ...|++|-+.|.+++.+++.| ||-.||+.|   |.+  ...|-.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~--~g~C~~   44 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEK--AGGCIN   44 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHH---Hhh--CCceEe
Confidence            457999999999888888888 999999999   655  366755

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=90.71  E-value=0.6  Score=49.56  Aligned_cols=44  Identities=18%  Similarity=0.516  Sum_probs=33.9

Q ss_pred             CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCR  516 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR  516 (534)
                      .+...|+||+.....   ..+|- -|-+||..||-.++.+ ++.||+=-
T Consensus       298 ~~~~~CpvClk~r~N---ptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~  342 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQN---PTVLEVSGYVFCYPCIFSYVVN-YGHCPVTG  342 (357)
T ss_pred             CccccChhHHhccCC---CceEEecceEEeHHHHHHHHHh-cCCCCccC
Confidence            445689999987543   22333 5999999999999996 89999753

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=90.29  E-value=0.17  Score=50.78  Aligned_cols=52  Identities=29%  Similarity=0.604  Sum_probs=38.9

Q ss_pred             CccccccccccccCCe-eEEecCC-----CccchhHHHHHHhc-cCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDR-IRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~-vrvLPCg-----H~FHk~CId~WLkk-~~~TCPLCR~eV~~~  522 (534)
                      +..|-||..+..+... ..+.||.     +..|..|+.+|+.. ....|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            5689999998764332 4577865     67899999999984 356799998866544

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=90.16  E-value=0.28  Score=47.32  Aligned_cols=34  Identities=29%  Similarity=0.602  Sum_probs=22.4

Q ss_pred             CccccccccccccCCeeEEec------------CCC-ccchhHHHHHHhc
Q 043444          471 PDQCYICLAEYEEGDRIRLLP------------CHH-EYHMSCVDKWLKE  507 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLP------------CgH-~FHk~CId~WLkk  507 (534)
                      +..|+|||+.--.   .++|-            |+- .-|..|++++-+.
T Consensus         2 d~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka   48 (162)
T PF07800_consen    2 DVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA   48 (162)
T ss_pred             CccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence            4679999987432   33332            443 3578899998763

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.73  E-value=0.11  Score=59.00  Aligned_cols=44  Identities=30%  Similarity=0.523  Sum_probs=34.0

Q ss_pred             CccccccccccccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccc
Q 043444          471 PDQCYICLAEYEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD  518 (534)
Q Consensus       471 ~~eC~ICLEeFeegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~e  518 (534)
                      ...|.||+..|.... ..+-|-|||..|++|+.....   .+|| |+++
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~D   55 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRD   55 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCcc
Confidence            457999998886543 456677999999999998755   5899 6553

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.19  E-value=0.27  Score=53.07  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccC--CCCccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH--GVCPLCRRDV  519 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~--~TCPLCR~eV  519 (534)
                      ...|||=.+.-.+...+..|.|||+..+.-|.+..+.+.  ..||+|=.+.
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            457999888877778889999999999999999988754  6799995443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.18  E-value=0.18  Score=58.78  Aligned_cols=44  Identities=25%  Similarity=0.686  Sum_probs=33.8

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ...|.+|--.++.  +++-.-|||.||.+|+.   . ....||-|+.++.
T Consensus       840 ~skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~-~~~~CP~C~~e~~  883 (933)
T KOG2114|consen  840 VSKCSACEGTLDL--PFVHFLCGHSYHQHCLE---D-KEDKCPKCLPELR  883 (933)
T ss_pred             eeeecccCCcccc--ceeeeecccHHHHHhhc---c-CcccCCccchhhh
Confidence            3579999887664  34555699999999998   3 3678999988554

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=88.86  E-value=0.21  Score=40.41  Aligned_cols=45  Identities=24%  Similarity=0.513  Sum_probs=32.9

Q ss_pred             ccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ..|..|...   +.+-.++||+|..+..|..-|=   -+.||+|-.++...
T Consensus         8 ~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r---YngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFV---GTKGTVLPCGHLICDNCFPGER---YNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccc---ccccccccccceeeccccChhh---ccCCCCCCCcccCC
Confidence            346666544   3345789999999999987763   46799998877654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=87.37  E-value=0.22  Score=60.23  Aligned_cols=44  Identities=30%  Similarity=0.691  Sum_probs=36.0

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR  517 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~  517 (534)
                      ...|.||++.+..-.  .+.-|||.||..|+..|+.. +..||+|+.
T Consensus      1153 ~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred             ccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence            347999999987422  24459999999999999996 899999974

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.33  E-value=0.28  Score=57.40  Aligned_cols=37  Identities=22%  Similarity=0.484  Sum_probs=29.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHh
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK  506 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLk  506 (534)
                      ...+.|.||...+-. ....+-||||.||..||.+-..
T Consensus       815 ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v~  851 (911)
T KOG2034|consen  815 EPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHVL  851 (911)
T ss_pred             cCccchHHhcchhhc-CcceeeeccchHHHHHHHHHHH
Confidence            456789999988765 3567889999999999987553

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.21  E-value=0.25  Score=50.63  Aligned_cols=50  Identities=28%  Similarity=0.599  Sum_probs=37.5

Q ss_pred             Cccccccccccc--cCCeeEEec-CCCccchhHHHHHHhccCCCCc--ccccccc
Q 043444          471 PDQCYICLAEYE--EGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCP--LCRRDVR  520 (534)
Q Consensus       471 ~~eC~ICLEeFe--egd~vrvLP-CgH~FHk~CId~WLkk~~~TCP--LCR~eV~  520 (534)
                      +..||||..+--  ++-+..+-| |-|..|..|+++.|..+...||  -|-+-+.
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR   64 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR   64 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence            457999997732  322333446 9999999999999998888999  7855443

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.97  E-value=0.55  Score=49.04  Aligned_cols=50  Identities=28%  Similarity=0.589  Sum_probs=37.3

Q ss_pred             cccccccc-cccCC-eeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          473 QCYICLAE-YEEGD-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       473 eC~ICLEe-Feegd-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .|++|... |...+ .+.+-+|+|..|..|++..+..+...||-|-..+.+.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            49999866 33222 2223379999999999999988778899997766554

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=85.66  E-value=0.39  Score=52.69  Aligned_cols=36  Identities=31%  Similarity=0.621  Sum_probs=31.3

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE  507 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk  507 (534)
                      +++..|+||...|++   +++|||+|..|..|...-+.+
T Consensus         2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~~   37 (699)
T KOG4367|consen    2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILVQ   37 (699)
T ss_pred             cccccCceehhhccC---ceEeecccHHHHHHHHhhccc
Confidence            346789999999986   789999999999999987764

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=84.56  E-value=0.62  Score=54.21  Aligned_cols=50  Identities=20%  Similarity=0.327  Sum_probs=37.3

Q ss_pred             CCccccccccccccC-CeeEEec---CCCccchhHHHHHHhc-----cCCCCccccccc
Q 043444          470 EPDQCYICLAEYEEG-DRIRLLP---CHHEYHMSCVDKWLKE-----IHGVCPLCRRDV  519 (534)
Q Consensus       470 e~~eC~ICLEeFeeg-d~vrvLP---CgH~FHk~CId~WLkk-----~~~TCPLCR~eV  519 (534)
                      +...|.||..+|... +..-.+|   |+|.||..||..|+.+     .+..|+.|.+-|
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            456799999888763 2334556   9999999999999975     355688887644

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.09  E-value=0.56  Score=48.44  Aligned_cols=54  Identities=28%  Similarity=0.655  Sum_probs=37.1

Q ss_pred             CCCCccccccccccccCCee-EEecCC-----CccchhHHHHHHhcc-------CCCCccccccccc
Q 043444          468 GVEPDQCYICLAEYEEGDRI-RLLPCH-----HEYHMSCVDKWLKEI-------HGVCPLCRRDVRQ  521 (534)
Q Consensus       468 ~~e~~eC~ICLEeFeegd~v-rvLPCg-----H~FHk~CId~WLkk~-------~~TCPLCR~eV~~  521 (534)
                      .+.+.-|-||+..=++.... -+-||.     |..|..|+..|+.+.       .-.||.|+.+...
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii   83 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII   83 (293)
T ss_pred             cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence            34467799999874433221 234664     789999999999762       2249999998754

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=81.43  E-value=0.5  Score=49.96  Aligned_cols=43  Identities=28%  Similarity=0.659  Sum_probs=30.1

Q ss_pred             cccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      -|.-|-..+..  .-+.+||.|+||.+|...-   .-+.||.|-..|.
T Consensus        92 fCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~~---~dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   92 FCDRCDFPIAI--YGRMIPCKHVFCLECARSD---SDKICPLCDDRVQ  134 (389)
T ss_pred             eecccCCccee--eecccccchhhhhhhhhcC---ccccCcCcccHHH
Confidence            46667655443  3467899999999996542   2458999977664

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.28  E-value=0.92  Score=45.11  Aligned_cols=40  Identities=30%  Similarity=0.716  Sum_probs=28.6

Q ss_pred             ccccccccccCCeeEEecCCC-ccchhHHHHHHhccCCCCccccccccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHH-EYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH-~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      |-+|-+.   +..+..|||.| .+|..|=..     -..||+|+.....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-----~~~CPiC~~~~~s  201 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES-----LRICPICRSPKTS  201 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc-----CccCCCCcChhhc
Confidence            6666654   45688999997 578889544     3469999886543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		6e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		4e-08
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		3e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		3e-06

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518
           E   C +C+ ++E    +R+LPC+HE+H  CVDKWLK  +  CP+CR D
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRAD 69

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C ICL+  EEG+ +R LPC H +H  CVD+WL   +  CP+CR D+
Sbjct: 16  KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI 61

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW 504
           PA +  +D+ P     +   A G  +   C IC +EY +GD    LPCHH +H  CV  W
Sbjct: 16  PASKESIDALPEILVTEDHGAVG--QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 505 LKEIHGVCPLCR 516
           L++  G CP+CR
Sbjct: 74  LQK-SGTCPVCR 84

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 473 QCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C +CLAE E+G+  R LP C H +H  CVD WL   H  CPLCR  V
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNS 529
           + C +CL +++  D + + PC H +H  C+ KWL E+  VCPLC   V Q A  S  S
Sbjct: 16  ELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWL-EVRKVCPLCNMPVLQLAQLSGPS 72

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C +C  +Y  G+ +R LPC+H +H SC+  WL++ H  CP+CR+ +
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSL 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-28
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-26
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-24
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	9e-20
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	6e-16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-15
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-10
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	2e-09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-09
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-09
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-08
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	5e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	4e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	6e-07
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	1e-06
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	4e-06
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-06
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	5e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	7e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	7e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	8e-05
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	4e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	5e-04
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	5e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	8e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  106 bits (266), Expect = 3e-28
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 446 APESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWL 505
                    P       +      E   C +C+ ++E    +R+LPC+HE+H  CVDKWL
Sbjct: 1   GSSGSSGQLPSYRFNPNN---HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWL 57

Query: 506 KEIHGVCPLCRRDVRQGA 523
           K  +  CP+CR D    +
Sbjct: 58  K-ANRTCPICRADSGPSS 74

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  100 bits (252), Expect = 4e-26
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 445 PAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW 504
           PA +  +D+ P     +   A G  +   C IC +EY +GD    LPCHH +H  CV  W
Sbjct: 16  PASKESIDALPEILVTEDHGAVG--QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73

Query: 505 LKEIHGVCPLCRRDV 519
           L++  G CP+CR   
Sbjct: 74  LQK-SGTCPVCRCMF 87

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 98.2 bits (245), Expect = 2e-25
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 460 KKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           + G++       ++C ICL+  EEG+ +R LPC H +H  CVD+WL   +  CP+CR D+
Sbjct: 3   QDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI-TNKKCPICRVDI 61

Query: 520 RQGATESS 527
                  S
Sbjct: 62  EAQLPSES 69

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 93.7 bits (233), Expect = 9e-24
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 464 KAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523
           K +     + C +CL +++  D + + PC H +H  C+ KWL+ +  VCPLC   V Q A
Sbjct: 8   KVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE-VRKVCPLCNMPVLQLA 66

Query: 524 TESSNSE 530
             S  S 
Sbjct: 67  QLSGPSS 73

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 84.2 bits (209), Expect = 1e-20
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 467 GGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
              +  +C +CLAE E+G+  R LP C H +H  CVD WL   H  CPLCR  V
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG-SHSTCPLCRLTV 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 82.5 bits (204), Expect = 9e-20
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 466 EGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATE 525
           E      +C +C  +Y  G+ +R LPC+H +H SC+  WL++ H  CP+CR+ +    T 
Sbjct: 10  EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTA 68

Query: 526 SSNSEIPSV 534
           ++   +  V
Sbjct: 69  TNPPGLTGV 77

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 71.9 bits (176), Expect = 6e-16
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 472 DQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRD 518
           D C  C AE ++ D + +   C+H +H  C+  W+K+ +  CPLC++D
Sbjct: 27  DACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQD 73

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 458 SHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517
           S     + +   + ++C IC+    +G    +LPC H +   C+DKW    H  CP+CR 
Sbjct: 2   SSGSSGRVKQLTDEEECCICM----DGRADLILPCAHSFCQKCIDKWSDR-HRNCPICRL 56

Query: 518 DVRQGATESSNS 529
            +      S  S
Sbjct: 57  QMTGANESSGPS 68

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 467 GGVEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           G      C ICL +         +LPC H  H +C ++ LKE    CPLC    
Sbjct: 1   GSSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPS 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
             ++C ICL +    +    LPC H +   C+ +W+++ +  CPLC+  V 
Sbjct: 4   VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE 51

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 473 QCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
            C IC+  Y E    G  I    C H +   C+   LK     CP CR+ +
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 473 QCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            C IC+  Y E    G  I    C H +   C+   LK     CP CR+ +  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 54.4 bits (130), Expect = 2e-09
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 469 VEPDQCYICLAEY---------------EEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCP 513
           +  D C IC                    E   +    C+H +H  C+ +WLK    VCP
Sbjct: 35  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP 93

Query: 514 LCRRD 518
           L  R+
Sbjct: 94  LDNRE 98

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 473 QCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
            C IC+  Y E    G  I    C H +   C+   LK     CP CR+ +
Sbjct: 12  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKI 61

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 22/161 (13%)

Query: 368 EIWERLRAGLDENSRRTTFCPSGLHPDGTCSCESFVMSEDSGTRAISRIVMLAEALFEVL 427
           E+  RL+  + +      F  S            + +   +    I + +   + LF+ L
Sbjct: 230 EVKARLQKFIHKPGSYI-FRLSCTRL------GQWAIGYVTADGNILQTIPHNKPLFQAL 282

Query: 428 DEIHR---------QPVSLSLSMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICL 478
            +  R         +  +  L+ +  P P+   D   +   +     E G     C IC 
Sbjct: 283 IDGFREGFYLFPDGRNQNPDLTGLCEPTPQ---DHIKVTQEQYELYCEMGSTFQLCKICA 339

Query: 479 AEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
              E    +++ PC H    SC+  W +     CP CR ++
Sbjct: 340 ---ENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 52.9 bits (126), Expect = 7e-09
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 469 VEPDQCYICLAEY---------------EEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCP 513
           +  D C IC                    E   +    C+H +H  C+ +WLK    VCP
Sbjct: 46  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP 104

Query: 514 LCRRD 518
           L  R+
Sbjct: 105 LDNRE 109

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 16/94 (17%)

Query: 451 VDSFPIKSHKKGDKA-EGGVEPDQCYICLAEYEEGDRI-----RLLPCHHEYHMSCVDKW 504
           +  FP+     G K  E   E  +C IC A   +G  +         C  + H  C+++W
Sbjct: 287 LCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346

Query: 505 LKE----------IHGVCPLCRRDVRQGATESSN 528
            K             G CP C+  +        N
Sbjct: 347 FKTLMDGKTFLEVSFGQCPFCKAKLSTSFAALLN 380

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           +C+IC+ +    D      C      SC+ +WL E    CP CR  ++ 
Sbjct: 24  RCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 470 EPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRD 518
           +P +C +C+   E  D       C ++    C  +   + +G+CP CR+ 
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
            P +C+IC   ++      +  C H +  SC  +  +     C +C +  
Sbjct: 14  IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQPT 59

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH-GVCPLCRRD 518
             C IC +   +G       C    H+ CV K+ +      CP C   
Sbjct: 16  KICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 473 QCYICLAEYEEGDRI-RLLPCHHEYHMSCVDKWLKEIHG--VCPLCRRDVR 520
           +C IC+  + E     +LL C H     C++K L        CP C +  R
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 27/97 (27%)

Query: 440 SMVSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGD-------------- 485
           S  S   PE V+  +  +     +        + C IC+ +                   
Sbjct: 2   SSGSSGEPEQVIRKYTEELKVAPE--------EDCIICMEKLAVASGYSDMTDSKALGPM 53

Query: 486 -RIRLLPCHHEYHMSCVDKWL----KEIHGVCPLCRR 517
              RL  C H +H+ C+        K+    CP C+ 
Sbjct: 54  VVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 469 VEPDQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           ++   C  C         ++L+   C H    SCVD       G CP C   +R+
Sbjct: 1   MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            C IC       D   +  C H +  SC+ +        CP C   V Q
Sbjct: 17  LCSICKGYLI--DATTITECLHTFCKSCIVRHF-YYSNRCPKCNIVVHQ 62

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C ICL           LPC H +   CV          C LCR+++
Sbjct: 17  ECAICLQTCVHP---VSLPCKHVFCYLCVKGASWL-GKRCALCRQEI 59

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           +C  C          +   C H +  SC+   L      C  C+  + +
Sbjct: 17  KCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            C +C   +   D   ++ C H +  +C+ ++L+     CP+C   V +
Sbjct: 17  MCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
              QC IC   + E      L C H +   C+++W+K     CP+CR+D++ 
Sbjct: 63  NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS 110

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.0 bits (103), Expect = 5e-05
 Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK-EIHGVCPLCRRD 518
               C IC +   +G       C    H+ CV K+ +      CP C   
Sbjct: 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           QC  C              C H     C+D+  +     CP CR D+ +
Sbjct: 54  QCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 7/51 (13%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523
           +C  C AE       +LLPC H     C++    +    CP+C+     GA
Sbjct: 8   RCQQCQAEA---KCPKLLPCLHTLCSGCLEASGMQ----CPICQAPWPLGA 51

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 473 QCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            C IC+  Y E    G  I    C H +   C+   LK  +  CP CR+ +  
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 60

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 473 QCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
            C IC+  Y E    G  I    C H +   C+   LK  +  CP CR+ +  
Sbjct: 74  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH 125

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           C  C    +     R++PC H +   C     K+   +CP C   V
Sbjct: 4   CDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPV 47

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCR 516
             D C IC  E ++   + + PCH     H  H +C+ +W+K      C LC+
Sbjct: 14  SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 84/569 (14%), Positives = 154/569 (27%), Gaps = 162/569 (28%)

Query: 34  SRTAAVEMEEYSDKNEVSSSE---------CRHPLINAAQNPAVSSLVSSTGTQFDSVTG 84
            R  ++    Y ++ +   ++          R       +  A+  L  +     D V G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLG 160

Query: 85  ASSGSSTAVSDG--TYAEDGRRNGG-----------PDNHGKGLAD-SKELVPPCLVSDD 130
             SG +    D   +Y    + +             P+   + L     ++ P      D
Sbjct: 161 --SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 131 SSPNEYYRDRSGTTA-STSFKDQESSESVSV-NDSANKNAVNGIENPAEGVSQIGPEPSC 188
            S N   R  S         K +     + V  +  N  A N                SC
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL------------SC 266

Query: 189 SYSQSL---EDSASAEVSVETHESEVIPVHNS----HSDPVSL-ASDIPVAFHSLGEESI 240
              + L         +       + +   H+S      +  SL    +      L  E +
Sbjct: 267 ---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323

Query: 241 RGALP---GGLGFLLSNRDQDRVDGNVLHVD------VVSISSNILSRGNADTDNREARR 291
               P     +   + +      D N  HV+      ++  S N+L       +  E R+
Sbjct: 324 TTN-PRRLSIIAESIRD-GLATWD-NWKHVNCDKLTTIIESSLNVL-------EPAEYRK 373

Query: 292 NSRRM--FRDAFSRRSSRRLTDS--PTIVFS-------TDDTGDL--GSHDRWLLDFSGD 338
              R+  F              +  PTI+ S         D   +    H   L++    
Sbjct: 374 MFDRLSVFPP-----------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQ 420

Query: 339 YFDDGVGGDSGYLGRRVHSLNERRRHSRSEIWERLRAGLDENSRRTTFCPSGLHPDGTCS 398
             +  +   S YL  +V   NE   H    I +             TF    L P     
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRS--IVDHYNI-------PKTFDSDDLIPP---- 467

Query: 399 CESFVMSED-----------SGTRAISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAP 447
                   D                  R+ +    +F     + ++   +     +  A 
Sbjct: 468 ------YLDQYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLEQK---IRHDSTAWNAS 517

Query: 448 ESVVDSFP-IKSHKKGDKAEGGVEPDQCYICL--AEYEE--GDRIRLLPCHHEYHMSCVD 502
            S++++   +K +K              YIC    +YE      +  LP   E ++ C  
Sbjct: 518 GSILNTLQQLKFYKP-------------YICDNDPKYERLVNAILDFLP-KIEENLIC-- 561

Query: 503 KWLKEIHGVCPLCRRDVRQGATESSNSEI 531
                          D+ + A  + +  I
Sbjct: 562 ---------SKYT--DLLRIALMAEDEAI 579

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517
           C IC     +        C H +   C+ + LK +   CP CR 
Sbjct: 26  CQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRY 66

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIP 532
           QC IC+    E      LPC+H     C    +++    CP CRR V       +     
Sbjct: 17  QCGICMEILVEPVT---LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSL 73

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKE-IHGVCPLCR 516
           +   C+IC    EE    R   C         H SC+  WL    +  C +C 
Sbjct: 5   DVPVCWICN---EELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICG 54

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYH-MSCVDKWLKEIHGVCPLCRRDVRQ 521
             C +C     +G  I      H      C  + LK+    CP+C+++++ 
Sbjct: 8   KPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARR-LKKAGASCPICKKEIQL 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.61
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.56
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.49
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.49
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.47
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.44
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.38
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.37
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.37
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.33
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.32
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.31
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.29
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.27
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.24
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.23
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.23
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.21
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.2
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.2
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.19
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.18
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.18
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.17
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.15
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.13
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.1
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.1
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.08
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.02
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.02
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.02
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.02
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.01
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.99
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.95
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.94
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.93
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.93
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.89
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.87
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.87
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.85
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.81
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.8
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.79
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.71
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.69
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.67
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.67
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.66
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.63
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.57
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.53
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.47
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.44
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.43
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.41
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.32
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.21
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.21
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.21
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.88
3nw0_A	238	Non-structural maintenance of chromosomes element	97.64
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.22
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	92.91
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	92.03
1we9_A	64	PHD finger family protein; structural genomics, PH	83.64

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.61  E-value=9e-16  Score=128.19  Aligned_cols=78  Identities=35%  Similarity=0.699  Sum_probs=66.4

Q ss_pred             CCCCCChHHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          442 VSLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       442 ~s~PApksvIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...++.+..|+.||...+......  ......|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||..+..
T Consensus        13 ~~~~~s~~~i~~lp~~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           13 ANPPASKESIDALPEILVTEDHGA--VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCCCCHHHHHTSCEEECCTTCSS--SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             CCCCCCHHHHHhCCCeeecccccc--cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            456789999999999887654422  3456789999999999999999999999999999999996 8899999998865


Q ss_pred             C
Q 043444          522 G  522 (534)
Q Consensus       522 ~  522 (534)
                      .
T Consensus        90 ~   90 (91)
T 2l0b_A           90 P   90 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-15  Score=121.59  Aligned_cols=70  Identities=34%  Similarity=0.873  Sum_probs=58.1

Q ss_pred             HHHhcCCceeccCCCCcCCCCCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          449 SVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       449 svIdsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ..++.||...+.....   ..+..+|+||++.|..++.++.|||+|.||..||.+||+. +.+||+||+++...
T Consensus         4 ~~i~~lp~~~~~~~~~---~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNH---QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSSC---SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCccc---cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence            4567788877754332   2456789999999999888999999999999999999996 88999999988654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=2.3e-14  Score=115.11  Aligned_cols=63  Identities=32%  Similarity=0.836  Sum_probs=53.6

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCCCCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSEIP  532 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~sssE~P  532 (534)
                      ....+|+||++.|...+.++.|+|+|.||..||.+|++. +.+||+||..+.........++.+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~~~~~~   75 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATNPPGLT   75 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCCCSSCT
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCCCCCCC
Confidence            446789999999998888889999999999999999996 789999999998776555544443

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.49  E-value=3.3e-14  Score=111.70  Aligned_cols=55  Identities=42%  Similarity=0.979  Sum_probs=48.8

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT  524 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds  524 (534)
                      .....|+||++.|..++.++.+||+|.||..||.+|++. +.+||+||..+.....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQLP   66 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSCCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCcCC
Confidence            446789999999998888999999999999999999996 7899999999876543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=6e-14  Score=111.61  Aligned_cols=55  Identities=36%  Similarity=0.856  Sum_probs=48.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT  524 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds  524 (534)
                      .....|+||++.|..+..+++|||+|.||..||.+|++. +.+||+||..+.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccccc
Confidence            446789999999998888899999999999999999996 7899999999876543

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.44  E-value=3.4e-14  Score=106.78  Aligned_cols=50  Identities=50%  Similarity=1.156  Sum_probs=45.6

Q ss_pred             CCccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      +..+|+||++.|..++.+..++ |+|.||..||.+|++. +.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            4578999999999988889998 9999999999999996 889999999874

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.38  E-value=3.2e-13  Score=115.65  Aligned_cols=59  Identities=20%  Similarity=0.452  Sum_probs=46.2

Q ss_pred             CccccccccccccCC---------------eeEEecCCCccchhHHHHHHhc----cCCCCcccccccccCCCCCCCC
Q 043444          471 PDQCYICLAEYEEGD---------------RIRLLPCHHEYHMSCVDKWLKE----IHGVCPLCRRDVRQGATESSNS  529 (534)
Q Consensus       471 ~~eC~ICLEeFeegd---------------~vrvLPCgH~FHk~CId~WLkk----~~~TCPLCR~eV~~~dse~sss  529 (534)
                      +.+|+||++.|....               .++.++|+|.||..||..||..    .+.+||+||..+.......+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g  102 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWG  102 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCC
Confidence            468999999997543               3457899999999999999952    3678999999987765554433

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.37  E-value=3.2e-13  Score=101.22  Aligned_cols=50  Identities=34%  Similarity=0.702  Sum_probs=43.4

Q ss_pred             CCccccccccccccC-CeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          470 EPDQCYICLAEYEEG-DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFeeg-d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ...+|+||++.|..+ +.++.++|+|.||..||.+|++. ..+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence            457899999999654 45778899999999999999996 789999999875

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=3.4e-13  Score=110.69  Aligned_cols=52  Identities=33%  Similarity=0.811  Sum_probs=41.8

Q ss_pred             CCcccccccccccc-----------CCeeEEec-CCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEE-----------GDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFee-----------gd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ++..|+||++.|..           ++.++.++ |+|.||..||.+||+. +.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence            45668888888753           45566666 9999999999999996 78999999987543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8.8e-13  Score=102.43  Aligned_cols=52  Identities=29%  Similarity=0.644  Sum_probs=44.3

Q ss_pred             CCCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .+...|+||++.|...    ..++.++|||.||..||.+|++. +.+||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            4467899999999753    34578999999999999999996 8899999998754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.32  E-value=3.5e-13  Score=117.28  Aligned_cols=65  Identities=26%  Similarity=0.546  Sum_probs=48.7

Q ss_pred             CceeccCCCCcCCCCCCccccccccccccC---------------CeeEEecCCCccchhHHHHHHhccCCCCccccccc
Q 043444          455 PIKSHKKGDKAEGGVEPDQCYICLAEYEEG---------------DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV  519 (534)
Q Consensus       455 Pv~~~k~~~~~~~~~e~~eC~ICLEeFeeg---------------d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV  519 (534)
                      .++.+..........+++.|+||++.|...               ..++.++|+|.||..||.+||+. +.+||+||.++
T Consensus        21 ~ik~~~~v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~   99 (106)
T 3dpl_R           21 EVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW   99 (106)
T ss_dssp             EEEEEEEEEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred             eEEEEEEeeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence            333333333333345578899999999754               13677899999999999999996 89999999986


Q ss_pred             c
Q 043444          520 R  520 (534)
Q Consensus       520 ~  520 (534)
                      .
T Consensus       100 ~  100 (106)
T 3dpl_R          100 E  100 (106)
T ss_dssp             C
T ss_pred             e
Confidence            4

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.31  E-value=8.2e-13  Score=103.58  Aligned_cols=54  Identities=30%  Similarity=0.678  Sum_probs=45.7

Q ss_pred             CCCcccccccccccc----CCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFee----gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      .+..+|+||++.|..    ++.++.++|||.||..||.+|++. +.+||+||..+...+
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhh
Confidence            346789999999875    245588999999999999999996 789999999987553

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.29  E-value=1.3e-12  Score=100.06  Aligned_cols=52  Identities=29%  Similarity=0.632  Sum_probs=44.6

Q ss_pred             CCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +..+|+||++.|...    +.++.++|||.||..||.+|++. +.+||+||..+...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCcc
Confidence            356899999999753    45578999999999999999996 88999999988764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-12  Score=102.09  Aligned_cols=54  Identities=31%  Similarity=0.901  Sum_probs=46.0

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCCCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~s  527 (534)
                      .+...|+||++.|..    +.+||+|.||..||.+|++. +..||+||..+...+..+.
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCcccc
Confidence            346789999999875    78999999999999999995 8999999999987654443

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7.8e-12  Score=101.57  Aligned_cols=54  Identities=30%  Similarity=0.600  Sum_probs=45.7

Q ss_pred             CCCccccccccccccCCe-eEEecCCCccchhHHHHHHhcc--CCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~~~  522 (534)
                      .+..+|+||++.|...+. ++.++|||.||..||..|++..  ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            446789999999987664 7889999999999999999962  37899999988654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1e-11  Score=98.75  Aligned_cols=52  Identities=23%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             CCCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGAT  524 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~ds  524 (534)
                      .+...|+||++.|..   .+.+ +|||.||..||..|++. +..||+||..+...+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   65 (72)
T 2djb_A           13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP   65 (72)
T ss_dssp             CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred             CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence            446789999999875   4455 99999999999999996 8899999999876543

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3.1e-12  Score=101.46  Aligned_cols=51  Identities=27%  Similarity=0.561  Sum_probs=44.0

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      .+...|+||++.|..   .+.+||||.||..||..|++. +..||+||..+...+
T Consensus        13 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           13 LTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHHH
T ss_pred             CCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHhh
Confidence            446789999999864   578899999999999999996 789999999987553

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.21  E-value=5.8e-13  Score=118.27  Aligned_cols=68  Identities=26%  Similarity=0.586  Sum_probs=9.8

Q ss_pred             hcCCceeccCCCCcCCCCCCccccccccccccC-------------C--eeEEecCCCccchhHHHHHHhccCCCCcccc
Q 043444          452 DSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEG-------------D--RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCR  516 (534)
Q Consensus       452 dsLPv~~~k~~~~~~~~~e~~eC~ICLEeFeeg-------------d--~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR  516 (534)
                      ..+.++.+..+........++.|+||++.|...             +  .+..++|+|.||..||.+||+. +.+||+||
T Consensus        29 ~r~~ikkw~ava~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr  107 (117)
T 4a0k_B           29 KRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDN  107 (117)
T ss_dssp             CSEEEEEEEEEEEEEECCCC------------------------------------------------------------
T ss_pred             CceEEEEEEEEEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCC
Confidence            444444444444444455678999999999752             2  2334589999999999999996 89999999


Q ss_pred             cccc
Q 043444          517 RDVR  520 (534)
Q Consensus       517 ~eV~  520 (534)
                      .++.
T Consensus       108 ~~~~  111 (117)
T 4a0k_B          108 REWE  111 (117)
T ss_dssp             ----
T ss_pred             Ceee
Confidence            9864

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.5e-11  Score=102.09  Aligned_cols=54  Identities=30%  Similarity=0.775  Sum_probs=45.0

Q ss_pred             CCCccccccccccccCCeeEEecCC-----CccchhHHHHHHhcc-CCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCH-----HEYHMSCVDKWLKEI-HGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCg-----H~FHk~CId~WLkk~-~~TCPLCR~eV~~~d  523 (534)
                      .+...|.||+++|.+++.+ ++||+     |.||..||++||... ..+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            4467899999999877765 69996     999999999999962 258999999987554

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.20  E-value=6.4e-12  Score=98.10  Aligned_cols=50  Identities=30%  Similarity=0.854  Sum_probs=43.0

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ....|+||++.|..  .++.+||||.||..||.+|++. +.+||+||..+...
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence            35689999999863  4578999999999999999996 78999999988643

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=97.45  Aligned_cols=51  Identities=27%  Similarity=0.599  Sum_probs=42.9

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   ++.++|||.||..||..|++.  ....||+||..+...
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            446789999999874   667899999999999999972  356899999988654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=99.09  Aligned_cols=48  Identities=21%  Similarity=0.578  Sum_probs=42.2

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      .....|+||++.|..   +++++|||.||..||..|++. ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence            346789999999965   567999999999999999996 889999999885

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.18  E-value=2.1e-11  Score=97.73  Aligned_cols=53  Identities=23%  Similarity=0.534  Sum_probs=43.5

Q ss_pred             CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhcc-CCCCcccccccccCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEI-HGVCPLCRRDVRQGAT  524 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~-~~TCPLCR~eV~~~ds  524 (534)
                      .+...|+||++.|..   ++.++ |||.||..||..|++.. ...||+||..+...+.
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2yur_A           13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA   67 (74)
T ss_dssp             CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred             CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence            446789999999975   56799 99999999999999852 2689999998765543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.3e-11  Score=96.40  Aligned_cols=51  Identities=18%  Similarity=0.421  Sum_probs=42.5

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   .+.++|||.||..||.+|++.....||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            446789999999875   345899999999999999964467899999988654

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.15  E-value=9.5e-12  Score=110.89  Aligned_cols=47  Identities=34%  Similarity=0.896  Sum_probs=41.6

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      +..|+||++.|..   ++.+||||.||..||..|+.. +.+||+||.++..
T Consensus        53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCC
Confidence            4579999999974   678999999999999999996 8899999998854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.13  E-value=3.5e-11  Score=96.46  Aligned_cols=51  Identities=24%  Similarity=0.446  Sum_probs=43.6

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   ++.++|||.||..||..||+..+.+||+||..+...
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            346789999999875   567899999999999999985478899999988654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.10  E-value=4.8e-11  Score=92.91  Aligned_cols=52  Identities=27%  Similarity=0.553  Sum_probs=42.3

Q ss_pred             Ccccccccc-ccccCCe-eEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLA-EYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLE-eFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +..|+||++ .|..... ...++|||.||..||.+|+.+....||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            567999999 7765443 356799999999999999876467899999988654

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.10  E-value=7.8e-11  Score=94.44  Aligned_cols=51  Identities=29%  Similarity=0.594  Sum_probs=42.9

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc-----CCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-----HGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-----~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   .+.++|||.||..||..|++..     ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            346789999999875   4578999999999999999862     56899999988754

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.10  E-value=2.7e-11  Score=102.66  Aligned_cols=49  Identities=31%  Similarity=0.812  Sum_probs=41.6

Q ss_pred             CccccccccccccCCeeEE-ecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRL-LPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrv-LPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.|..   ++. ++|||.||..||..|++.....||+||..+...
T Consensus        22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            5679999999974   556 899999999999999997337999999998653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.08  E-value=5.1e-11  Score=102.55  Aligned_cols=52  Identities=29%  Similarity=0.643  Sum_probs=44.8

Q ss_pred             CCccccccccccccC----CeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEG----DRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeeg----d~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +...|+||++.|...    +.++.++|||.||..||.+||+. +.+||+||..+...
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence            467899999999753    45588999999999999999996 78999999988654

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=9.7e-11  Score=90.48  Aligned_cols=44  Identities=27%  Similarity=0.596  Sum_probs=37.6

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLC  515 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLC  515 (534)
                      .+...|+||++.|..   ++.++|||.||..||.+|++.  ....||+|
T Consensus        18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            456789999999875   667899999999999999984  35689998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.1e-10  Score=93.57  Aligned_cols=51  Identities=27%  Similarity=0.546  Sum_probs=42.8

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-----cCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-----IHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-----~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   ++.++|||.||..||..|++.     ....||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            346789999999875   456899999999999999985     267899999998764

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.05  E-value=2.6e-11  Score=96.80  Aligned_cols=51  Identities=29%  Similarity=0.494  Sum_probs=42.8

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhcc------CCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI------HGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~------~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   ++.+||||.||..||..|++..      ...||+||..+...
T Consensus        10 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A           10 QEEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             ccCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            446789999999875   4568999999999999999852      56899999998754

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=101.65  Aligned_cols=48  Identities=25%  Similarity=0.478  Sum_probs=41.8

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...|+||++.|..   ++.+||||.||..||..|+......||+||..+..
T Consensus        52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4679999999984   67789999999999999998545589999999866

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=1.1e-10  Score=96.31  Aligned_cols=54  Identities=22%  Similarity=0.506  Sum_probs=43.6

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccC--CCCcccccccccCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH--GVCPLCRRDVRQGATE  525 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~--~TCPLCR~eV~~~dse  525 (534)
                      ....+|+||++.|..++.  ...|+|.||..||.+||+. +  .+||+||.+......+
T Consensus        13 ~~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~-~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTT-CSSCCCTTTCSCCCSCCCC
T ss_pred             CCCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHh-cCCCCCCCCcCcCCCCCCC
Confidence            345789999999987543  3379999999999999996 5  7899999988755433

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.4e-10  Score=87.55  Aligned_cols=44  Identities=25%  Similarity=0.798  Sum_probs=36.8

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc--cCCCCccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE--IHGVCPLC  515 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk--~~~TCPLC  515 (534)
                      .+...|+||++.|..   .+.++|||.||..||.+|++.  ....||+|
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            446789999999975   456899999999999999653  46789998

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=94.83  Aligned_cols=49  Identities=24%  Similarity=0.571  Sum_probs=41.5

Q ss_pred             CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE-IHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk-~~~TCPLCR~eV~  520 (534)
                      .+...|+||++.|..   ++.+| |||.||..||..|+.. ....||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            456789999999874   67899 9999999999999975 2368999999873

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.02  E-value=1.3e-10  Score=97.32  Aligned_cols=47  Identities=28%  Similarity=0.677  Sum_probs=41.0

Q ss_pred             CccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...|+||++.|..   .+.+ +|||.||..||..|+.. +..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence            4679999999975   4555 89999999999999996 7899999998865

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.02  E-value=1.3e-10  Score=99.88  Aligned_cols=53  Identities=30%  Similarity=0.694  Sum_probs=45.1

Q ss_pred             CCCcccccccccccc----CCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEE----GDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFee----gd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..    +...+.++|||.||..||.+||+. +.+||+||..+...
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK  126 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChh
Confidence            346789999999875    234578899999999999999996 88999999998765

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.01  E-value=1.5e-10  Score=98.66  Aligned_cols=49  Identities=20%  Similarity=0.639  Sum_probs=42.0

Q ss_pred             CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +...|+||++.|..   .+.+ +|||.||..||..|+.. ...||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           14 PHLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKT   63 (108)
T ss_dssp             GGTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSS
T ss_pred             CcCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHHh-CCcCcCCCcccccc
Confidence            35789999999874   4555 99999999999999996 78999999988754

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.99  E-value=2e-10  Score=104.73  Aligned_cols=50  Identities=24%  Similarity=0.569  Sum_probs=41.4

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      +...|+||++.|..  .+..++|||.||..||..||+..+..||+||..+..
T Consensus        53 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            35689999999975  333449999999999999999657889999998853

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.95  E-value=7.6e-11  Score=101.35  Aligned_cols=50  Identities=32%  Similarity=0.672  Sum_probs=42.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .++..|+||++.|..   ++.++|||.||..||..|+......||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            345789999999874   67889999999999999998656789999998864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.94  E-value=3.7e-10  Score=102.89  Aligned_cols=49  Identities=24%  Similarity=0.467  Sum_probs=42.1

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.|..   ++.+||||.||..||..|+......||+||..+...
T Consensus        78 ~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4679999999875   567999999999999999996445899999998765

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.93  E-value=5.7e-10  Score=96.80  Aligned_cols=51  Identities=24%  Similarity=0.521  Sum_probs=43.2

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   .+.++|||.||..||..|++.....||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            446789999999875   567899999999999999997445999999988653

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.93  E-value=3.1e-10  Score=96.19  Aligned_cols=49  Identities=31%  Similarity=0.613  Sum_probs=40.4

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhcc--CCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI--HGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~--~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.|..   ++.+||||.||..||..|+...  ...||+||..+...
T Consensus        21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            3579999999864   4568999999999999999852  14899999988754

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.89  E-value=7.5e-10  Score=95.25  Aligned_cols=50  Identities=24%  Similarity=0.466  Sum_probs=42.7

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ...|+||++.|..   ++.++|||.||..||..|+......||+||..+...+
T Consensus        23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            4679999999874   5668999999999999999964678999999987643

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.87  E-value=1.8e-09  Score=89.62  Aligned_cols=50  Identities=12%  Similarity=0.026  Sum_probs=44.0

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|.+   +++++|||.|++.||..||.. +.+||+||..+...
T Consensus        12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred             chheECcccCchhcC---CeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChH
Confidence            346789999999986   778999999999999999996 89999999987653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.87  E-value=1.9e-09  Score=88.88  Aligned_cols=57  Identities=23%  Similarity=0.592  Sum_probs=44.5

Q ss_pred             CCCccccccccccccCCeeEEec--CCCccchhHHHHHHhccCCCCcccccccccCCCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP--CHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATES  526 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP--CgH~FHk~CId~WLkk~~~TCPLCR~eV~~~dse~  526 (534)
                      .++..|+||++.|...+. ..+|  |||.||..||..|+......||+||..+....-..
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            456789999999865433 3444  99999999999998655678999999997765433

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.85  E-value=1.9e-09  Score=92.43  Aligned_cols=50  Identities=12%  Similarity=0.041  Sum_probs=44.1

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|.+   ++++||||.|++.||..||.. +.+||+||..+...
T Consensus        27 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChh
Confidence            446789999999986   778999999999999999995 88999999988653

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.81  E-value=3.3e-09  Score=90.64  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=43.9

Q ss_pred             CCCccccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|.+   +++++|| |.|++.||.+||.. +.+||+||..+...
T Consensus        20 p~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred             cHhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence            346789999999986   7789999 99999999999996 78999999988653

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.80  E-value=1.2e-09  Score=98.71  Aligned_cols=49  Identities=18%  Similarity=0.303  Sum_probs=41.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      .+...|+||++.|..   ++.++|||.||..||.+|++.....||+||.++.
T Consensus        29 ~~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           29 EAKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             CcCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            456789999999975   4678999999999999999864458999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.79  E-value=3.5e-09  Score=101.42  Aligned_cols=50  Identities=16%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ....|+||++.|.+   ++++||||.||+.||..||.....+||+||.++...
T Consensus       207 ~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          207 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             cccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            46789999999986   778999999999999999986445699999988643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=3.6e-09  Score=110.60  Aligned_cols=49  Identities=27%  Similarity=0.738  Sum_probs=42.6

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ..+|+||++.+..   ++.+||||.||..||..|+......||+||..+...
T Consensus       332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            4689999999864   678999999999999999984378999999988654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=3e-09  Score=83.90  Aligned_cols=48  Identities=23%  Similarity=0.544  Sum_probs=40.0

Q ss_pred             CCccccccccccccCCeeEEe--cCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLL--PCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvL--PCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ++.+|+||++.+..   ++.+  ||||. |+..|+..|++. +..||+||.++..
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   57 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM   57 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred             CcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence            35679999998764   4555  99999 899999999985 7899999998853

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=2.6e-09  Score=81.78  Aligned_cols=48  Identities=31%  Similarity=0.609  Sum_probs=40.1

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      .+...|+||++.|..   ++.|||||.||..||..|    ...||+||+.+....
T Consensus         4 ~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~   51 (56)
T 1bor_A            4 FQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred             ccCCCceEeCCccCC---eEEcCCCCcccHHHHccC----CCCCCcCCcEeecCC
Confidence            346789999999975   568999999999999884    568999999987654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.69  E-value=2.4e-09  Score=92.67  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=39.0

Q ss_pred             CccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ...|+||++.|..   ++.+ +|||.||..||..|+.   ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~---pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~   67 (117)
T 1jm7_B           22 LLRCSRCTNILRE---PVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI   67 (117)
T ss_dssp             TTSCSSSCSCCSS---CBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred             CCCCCCCChHhhC---ccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence            5679999999974   5566 9999999999999987   689999998854

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.67  E-value=4e-09  Score=85.01  Aligned_cols=44  Identities=25%  Similarity=0.620  Sum_probs=37.9

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.+..   ++.+||||. ||..|+..|     ..||+||..+...
T Consensus        24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK   68 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred             CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence            4679999998764   678899999 999999998     5799999988643

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.67  E-value=7.9e-09  Score=81.23  Aligned_cols=48  Identities=17%  Similarity=0.510  Sum_probs=39.6

Q ss_pred             CCccccccccccccCCeeEEe--cCCCc-cchhHHHHHHhccCCCCccccccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLL--PCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvL--PCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      ....|.||++.+..   ...+  ||||. |+..|+..|++. ...||+||.++..
T Consensus         6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence            35689999998653   3455  99998 999999999986 6899999998853

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=84.99  Aligned_cols=47  Identities=19%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             CCCccccccccccccCCeeEEec-CCCccchhHHHHHHhcc-----CCCCcc--cccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEI-----HGVCPL--CRRD  518 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~-----~~TCPL--CR~e  518 (534)
                      .....|+||++.|.+   +++++ |||.|++.||..||...     ..+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            346789999999985   67886 99999999999999862     258999  9865

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.63  E-value=1.6e-08  Score=92.36  Aligned_cols=51  Identities=24%  Similarity=0.521  Sum_probs=43.3

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|+||++.|..   ++.++|||.||..||.+|++.....||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           16 ESKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            456789999999875   567899999999999999986445999999988654

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.57  E-value=1.4e-08  Score=105.01  Aligned_cols=56  Identities=27%  Similarity=0.711  Sum_probs=42.7

Q ss_pred             CCCccccccccccccCCeeE-----EecCCCccchhHHHHHHhccC----------CCCcccccccccCCC
Q 043444          469 VEPDQCYICLAEYEEGDRIR-----LLPCHHEYHMSCVDKWLKEIH----------GVCPLCRRDVRQGAT  524 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vr-----vLPCgH~FHk~CId~WLkk~~----------~TCPLCR~eV~~~ds  524 (534)
                      ....+|+||++.+.++..+.     ..+|+|.||..||.+||+...          ..||+||+++....+
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~  376 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFA  376 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHH
Confidence            34678999999998733321     236999999999999998621          469999999876543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.53  E-value=3.7e-08  Score=93.22  Aligned_cols=50  Identities=16%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +...|+||++.|.+   ++++||||.|++.||..||.....+||+||..+...
T Consensus       105 ~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          105 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             HhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            35789999999985   778899999999999999986334799999988643

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.47  E-value=8.5e-08  Score=75.55  Aligned_cols=49  Identities=27%  Similarity=0.657  Sum_probs=38.3

Q ss_pred             CCCccccccccccccCCeeEEecCC--C---ccchhHHHHHHhc-cCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCH--H---EYHMSCVDKWLKE-IHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCg--H---~FHk~CId~WLkk-~~~TCPLCR~eV~  520 (534)
                      .+...|.||+++.  ++.. ++||.  |   .||..||.+|+.. .+.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3467899999973  3333 68965  4   9999999999985 3578999999874

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.44  E-value=8.1e-08  Score=80.09  Aligned_cols=49  Identities=20%  Similarity=0.567  Sum_probs=39.2

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhc----c---CCCCcc--cccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE----I---HGVCPL--CRRD  518 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk----~---~~TCPL--CR~e  518 (534)
                      +..+|+||++.|...+.+...+|||.||..||..|+..    .   ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            45689999999976555444579999999999999974    1   246999  9987

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=5.6e-08  Score=78.20  Aligned_cols=44  Identities=25%  Similarity=0.625  Sum_probs=36.4

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.+..   ++.+||||. ||..|+..     ...||+||..+...
T Consensus        25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence            4579999999764   667899999 99999953     36899999988654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-07  Score=75.09  Aligned_cols=46  Identities=30%  Similarity=0.717  Sum_probs=38.4

Q ss_pred             CCCccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .+...|.||++.+..   ++.|||||. ||..|+..     ...||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhce
Confidence            446789999998754   788999999 99999983     47899999988654

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.32  E-value=1.2e-07  Score=77.73  Aligned_cols=44  Identities=30%  Similarity=0.668  Sum_probs=37.3

Q ss_pred             CccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.+..   ++.+||||. ||..|+..|     ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCe
Confidence            3579999998764   788999999 999999876     3899999988654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.21  E-value=5.2e-07  Score=90.24  Aligned_cols=52  Identities=21%  Similarity=0.406  Sum_probs=41.5

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhc-cCCCCcc--cccccccC
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKE-IHGVCPL--CRRDVRQG  522 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk-~~~TCPL--CR~eV~~~  522 (534)
                      .....|+||++.|..  .++.+.|||.|++.||..|++. ....||+  ||..+...
T Consensus       179 ~~el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          179 KIELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             BCCSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred             ceeeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence            446789999999974  4444589999999999999985 2357999  99977543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.21  E-value=2.8e-07  Score=94.73  Aligned_cols=45  Identities=24%  Similarity=0.699  Sum_probs=38.5

Q ss_pred             CCccccccccccccCCeeEEecCCCc-cchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHE-YHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~-FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +...|+||++.+..   ++.+||||. ||..|+..|     ..||+||..+...
T Consensus       294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~  339 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT  339 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred             CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence            35789999999864   778899999 999999988     5799999988643

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.21  E-value=5.6e-07  Score=70.89  Aligned_cols=48  Identities=15%  Similarity=0.186  Sum_probs=41.4

Q ss_pred             ccccccccccccCCeeEEe-cCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ..|+||++.|.+   .+++ +|||.|.+.||.+||++ +.+||+++.++...+
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~   52 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEE   52 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGG
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhh
Confidence            569999999985   5677 89999999999999996 678999999886543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.88  E-value=7.6e-06  Score=71.37  Aligned_cols=46  Identities=26%  Similarity=0.557  Sum_probs=39.5

Q ss_pred             ccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       474 C~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      |.+|--.|..  ..+.+||+|.||..|+..|.++..++||.|+.+|..
T Consensus         4 C~~C~~Pi~i--ygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            4 CDKCGLPIKV--YGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             CTTTCSBCSE--EEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             cCccCCCeEE--EeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            8888877664  678999999999999999998667899999998854

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.64  E-value=2.2e-05  Score=76.86  Aligned_cols=52  Identities=23%  Similarity=0.513  Sum_probs=40.3

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhcc-CCCCcccccccccCCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-HGVCPLCRRDVRQGAT  524 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-~~TCPLCR~eV~~~ds  524 (534)
                      ..+|.||.+....|.  +.-.|+|.||..|+.+|++.. ...||.|+...+....
T Consensus       180 i~~C~iC~~iv~~g~--~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~  232 (238)
T 3nw0_A          180 VKICNICHSLLIQGQ--SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP  232 (238)
T ss_dssp             CCBCTTTCSBCSSCE--ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred             CCcCcchhhHHhCCc--ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence            567999999988652  222399999999999999862 3489999997765543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=92.91  E-value=0.043  Score=45.66  Aligned_cols=34  Identities=15%  Similarity=0.334  Sum_probs=26.2

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHH
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKW  504 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~W  504 (534)
                      +..|.||++.|........+.|+|.|+..|+..|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4679999987543333345899999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=92.03  E-value=0.095  Score=41.98  Aligned_cols=48  Identities=23%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             CCCccccccccccccCCeeEEecCCCccchhHHHHHHhccC---CCCccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH---GVCPLCRRDV  519 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~---~TCPLCR~eV  519 (534)
                      .....|.||.+.   ++.+..-.|...||..|+.+.|....   -.||.|....
T Consensus        10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            345679999753   33322224999999999999988632   3699997643

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=83.64  E-value=0.25  Score=38.44  Aligned_cols=49  Identities=22%  Similarity=0.405  Sum_probs=35.3

Q ss_pred             CCccccccccccccCCeeEEe-cCCCccchhHHHHHHhc----cCCCCcccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKE----IHGVCPLCRRD  518 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk----~~~TCPLCR~e  518 (534)
                      +...|+||...+.++..++.. .|..-||..|+.--...    ....||.|+..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            456799999998765555554 49999999998753321    25679999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	3e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	3e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-13
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-12
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-12
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-12
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	5e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-05
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	1e-04
d1mm2a_	61	g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens	0.004

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 70.7 bits (173), Expect = 3e-16
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +  +C +CLAE E+G+  R LP C H +H  CVD WL   H  CPLCR  V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 472 DQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           ++C ICL +    +    LPC H +   C+ +W+++ +  CPLC+  V  
Sbjct: 6   ERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (152), Expect = 3e-13
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 466 EGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR 520
           E G     C IC    ++   +++ PC H    SC+  W +     CP CR +++
Sbjct: 18  EMGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 69

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 16/65 (24%)

Query: 469 VEPDQCYICLAEYEE---------------GDRIRLLPCHHEYHMSCVDKWLKEIHGVCP 513
           +  D C IC     +                  +    C+H +H  C+ +WLK    VCP
Sbjct: 19  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCP 77

Query: 514 LCRRD 518
           L  R+
Sbjct: 78  LDNRE 82

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 3e-12
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 470 EPDQCYICLAEYEEGDRIRLL--PCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ 521
           +   C  C         ++L+   C H    SCVD       G CP C   +R+
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 7e-12
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 473 QCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV 519
           +C +C+   E  D       C ++    C  +   + +G+CP CR+  
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 474 CYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA 523
           C  C AE +     +LLPC H     C++         CP+C+     GA
Sbjct: 9   CQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA 51

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 50.6 bits (120), Expect = 5e-09
 Identities = 11/54 (20%), Positives = 15/54 (27%), Gaps = 3/54 (5%)

Query: 470 EPDQCYICLAEYEEGD--RIRLLPCHHEYHMSCVDKWLKEIHGV-CPLCRRDVR 520
           +   C+IC  E                  H SC+  WL       C +C     
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 27/93 (29%)

Query: 443 SLPAPESVVDSFPIKSHKKGDKAEGGVEPDQCYICL---------------AEYEEGDRI 487
           S   PE V+  +  +     +        + C IC+                        
Sbjct: 5   SSGEPEQVIRKYTEELKVAPE--------EDCIICMEKLAVASGYSDMTDSKALGPMVVG 56

Query: 488 RLLPCHHEYHMSCVDKWLK----EIHGVCPLCR 516
           RL  C H +H+ C+         +    CP C+
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGV--CPLCRRDVRQ 521
           +C ICL   +E        C H +   C+ K L +  G   CPLC+ D+ +
Sbjct: 23  ECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 7/57 (12%)

Query: 467 GGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLK-------EIHGVCPLCR 516
           G      C +CL EY       +  C   +   C+ ++++       E    CP   
Sbjct: 1   GSSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVC--PLCRRDVR 520
           +C  C       + + L  C H +  +CV   +     VC  P   +D++
Sbjct: 24  RCSRCTNILR--EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLK 71

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 473 QCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRR 517
            C IC     +        C H +   C+ + LK +   CP CR 
Sbjct: 25  SCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRY 66

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.004
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI---HGVCPLCRRDVRQG 522
             + C +C    + G+ +    C   YH+ C++  L EI     +CP C     +G
Sbjct: 8   HMEFCRVC---KDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.54
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.35
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.35
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.34
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.31
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.1
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.06
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.02
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.93
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.92
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.85
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.74
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.58
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.41
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	90.71
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.09
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	82.85
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	81.77

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.54  E-value=8e-16  Score=117.76  Aligned_cols=50  Identities=50%  Similarity=1.156  Sum_probs=45.4

Q ss_pred             CCccccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ++.+|+||+++|..++.++.++ |+|.||..||.+||+. +.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEeE
Confidence            4567999999999999998886 9999999999999996 899999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.9e-13  Score=115.03  Aligned_cols=57  Identities=21%  Similarity=0.443  Sum_probs=44.1

Q ss_pred             Ccccccccccccc---------------CCeeEEecCCCccchhHHHHHHhcc----CCCCcccccccccCCCCCC
Q 043444          471 PDQCYICLAEYEE---------------GDRIRLLPCHHEYHMSCVDKWLKEI----HGVCPLCRRDVRQGATESS  527 (534)
Q Consensus       471 ~~eC~ICLEeFee---------------gd~vrvLPCgH~FHk~CId~WLkk~----~~TCPLCR~eV~~~dse~s  527 (534)
                      +..|+||++.|..               ...+.+++|+|.||..||..||+..    +.+||+||..+.......+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP  100 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQP  100 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCT
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCC
Confidence            4679999998753               2245677899999999999999852    3479999998866654444

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.6e-14  Score=105.14  Aligned_cols=50  Identities=22%  Similarity=0.519  Sum_probs=42.1

Q ss_pred             ccccccccccccCCe-eEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          472 DQCYICLAEYEEGDR-IRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       472 ~eC~ICLEeFeegd~-vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .+|+||+++|..++. +..++|||.||..||.+|++..+..||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            379999999987664 34568999999999999998656679999998764

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.34  E-value=1.8e-13  Score=107.71  Aligned_cols=48  Identities=31%  Similarity=0.925  Sum_probs=42.1

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCccccccccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQ  521 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~  521 (534)
                      .++|+||++.|..  .++.+||||.||..||.+||++ +.+||+||.++..
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~~   52 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchHh
Confidence            4679999999864  5677899999999999999996 8999999998854

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-13  Score=113.69  Aligned_cols=51  Identities=31%  Similarity=0.745  Sum_probs=42.2

Q ss_pred             CCCccccccccccccCC---------------eeEEecCCCccchhHHHHHHhccCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGD---------------RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd---------------~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~  520 (534)
                      ..+++|+||++.|....               .+..++|+|.||..||.+||+. +.+||+||.+..
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            34567999998876422               3677899999999999999996 899999999764

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.2e-13  Score=104.47  Aligned_cols=53  Identities=25%  Similarity=0.510  Sum_probs=42.6

Q ss_pred             CCccccccccccccC-C-eeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEG-D-RIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeeg-d-~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ++..|+||++.+... + .+.+++|||.||..||.+||++.+..||+||+.+...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            457899999986543 2 3456789999999999999976567899999988654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=106.36  Aligned_cols=50  Identities=26%  Similarity=0.723  Sum_probs=42.9

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ...|+||++.+..   ++++||||.||..||..||+..+.+||+||..|....
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            3569999998864   7889999999999999999854678999999997654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=2.3e-11  Score=100.74  Aligned_cols=50  Identities=24%  Similarity=0.466  Sum_probs=42.8

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ...|+||++.|..   +++++|||.||..||.+|++.....||+||.++...+
T Consensus        23 ~l~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CcCCccCCcchhc---ceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            3579999999875   6789999999999999999865678999999886554

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=2.3e-11  Score=92.46  Aligned_cols=46  Identities=17%  Similarity=0.275  Sum_probs=40.1

Q ss_pred             cccccccccccCCeeEEec-CCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          473 QCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      .|+||++.|.+   .++++ |||.||+.||.+||++ +.+||+||.++...
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGG
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHH
Confidence            59999999874   55665 9999999999999997 88999999988654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-11  Score=94.94  Aligned_cols=46  Identities=33%  Similarity=0.622  Sum_probs=39.2

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccCC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGA  523 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~d  523 (534)
                      ..+|+||++.|..   +++|||||.||..||.+|    +.+||+||.++....
T Consensus         6 ~l~C~IC~~~~~~---p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccCC---CEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCC
Confidence            4689999999975   568899999999999876    468999999997663

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4e-11  Score=100.51  Aligned_cols=49  Identities=31%  Similarity=0.624  Sum_probs=40.6

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccC--CCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIH--GVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~--~TCPLCR~eV~~~  522 (534)
                      ..+|+||++.|..   ++.++|||.||..||..||+...  ..||+||..+...
T Consensus        21 ~l~CpIC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CcCCCccCchhCC---eEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            3579999999874   56789999999999999997522  4799999988654

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=3.1e-10  Score=91.15  Aligned_cols=50  Identities=16%  Similarity=0.183  Sum_probs=43.2

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      +...|+||++.|.+   +++++|||.|++.||.+||.+.+.+||+||..+...
T Consensus         6 ~~l~CpIc~~l~~d---Pv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           6 DYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             STTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             ccccCcCcCchhhh---hcccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            46789999999975   568999999999999999987567899999987543

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=2.9e-10  Score=90.79  Aligned_cols=50  Identities=24%  Similarity=0.467  Sum_probs=43.3

Q ss_pred             CCccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ++..|+||++.|.+   +++++|||.|++.||.+|++.....||.|+..+...
T Consensus         7 ~~l~CpIc~~~m~d---PV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhhC---ceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            46789999999976   668899999999999999986457799999988654

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.85  E-value=4.9e-10  Score=85.62  Aligned_cols=49  Identities=24%  Similarity=0.549  Sum_probs=37.9

Q ss_pred             CCCccccccccccccCCeeEEec-----CCCccchhHHHHHHhc-cCCCCcccccccc
Q 043444          469 VEPDQCYICLAEYEEGDRIRLLP-----CHHEYHMSCVDKWLKE-IHGVCPLCRRDVR  520 (534)
Q Consensus       469 ~e~~eC~ICLEeFeegd~vrvLP-----CgH~FHk~CId~WLkk-~~~TCPLCR~eV~  520 (534)
                      ++...|.||++++...   .+.|     |+|.||..||.+|+.. .+.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4467899999987643   2334     4599999999999964 4568999999874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.7e-10  Score=92.40  Aligned_cols=47  Identities=23%  Similarity=0.487  Sum_probs=38.1

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhccCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ...|+||++.|..  .+...+|||.||..||.+|+..   .||+||..+...
T Consensus        22 ~l~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCS
T ss_pred             cCCCccCCchhhc--CceeCCCCCchhHHHHHHHHhc---cccccCCcCchh
Confidence            4579999999974  3434589999999999999863   599999887654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2e-08  Score=84.00  Aligned_cols=49  Identities=14%  Similarity=0.066  Sum_probs=42.3

Q ss_pred             CCccccccccccccCCeeEEecCC-CccchhHHHHHHhccCCCCcccccccccC
Q 043444          470 EPDQCYICLAEYEEGDRIRLLPCH-HEYHMSCVDKWLKEIHGVCPLCRRDVRQG  522 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLPCg-H~FHk~CId~WLkk~~~TCPLCR~eV~~~  522 (534)
                      ++..|+||++.|.+   ++++||+ |.|++.||.+||+. +.+||+||.++...
T Consensus        21 ~~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred             HHhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHh-cCCcccccccccch
Confidence            46899999999986   7789866 57999999999996 88999999988653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.8e-08  Score=79.64  Aligned_cols=46  Identities=20%  Similarity=0.559  Sum_probs=37.2

Q ss_pred             CccccccccccccCCeeEEecCCCccchhHHHHHHhcc-------CCCCcccc
Q 043444          471 PDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEI-------HGVCPLCR  516 (534)
Q Consensus       471 ~~eC~ICLEeFeegd~vrvLPCgH~FHk~CId~WLkk~-------~~TCPLCR  516 (534)
                      ..+|+||++++...+.+..++|+|.||..||..|++..       .-.||.|+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            56899999999876666667899999999999999741       12599864

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.71  E-value=0.029  Score=41.97  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=35.5

Q ss_pred             CCccccccccccccCCeeEEec-CCCccchhHHHHHHhc----cCCCCcccccc
Q 043444          470 EPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKE----IHGVCPLCRRD  518 (534)
Q Consensus       470 e~~eC~ICLEeFeegd~vrvLP-CgH~FHk~CId~WLkk----~~~TCPLCR~e  518 (534)
                      ....|.||...+..++.++.-. |+..||..|+..-...    ....||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3567999999887776655444 9999999999642221    24679999764

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.06  Score=38.50  Aligned_cols=44  Identities=27%  Similarity=0.745  Sum_probs=30.7

Q ss_pred             cccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---CCCCccccc
Q 043444          473 QCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---HGVCPLCRR  517 (534)
Q Consensus       473 eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~~TCPLCR~  517 (534)
                      .|.||...-..+ .++.- .|...||..|+.+-+...   .-.||.||.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488998664433 33333 399999999999987642   235999975

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=0.16  Score=38.65  Aligned_cols=44  Identities=25%  Similarity=0.640  Sum_probs=29.1

Q ss_pred             ccccccccccccCCeeEEe-cCCCccchhHHHHHHhcc---CCCCccccccc
Q 043444          472 DQCYICLAEYEEGDRIRLL-PCHHEYHMSCVDKWLKEI---HGVCPLCRRDV  519 (534)
Q Consensus       472 ~eC~ICLEeFeegd~vrvL-PCgH~FHk~CId~WLkk~---~~TCPLCR~eV  519 (534)
                      ..|.||..   .++ ++.- .|...||..|+.+.|...   .-.||.|+..-
T Consensus         8 ~~C~~C~~---~~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           8 TICRVCQK---PGD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SCCSSSCS---SSC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCC---cCE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            34666653   344 3333 499999999999988652   23499996544

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.77  E-value=0.11  Score=40.97  Aligned_cols=52  Identities=19%  Similarity=0.489  Sum_probs=33.1

Q ss_pred             CccccccccccccC-CeeEEe-cCCCccchhHHHHHHhc-------cCCCCcccccccccC
Q 043444          471 PDQCYICLAEYEEG-DRIRLL-PCHHEYHMSCVDKWLKE-------IHGVCPLCRRDVRQG  522 (534)
Q Consensus       471 ~~eC~ICLEeFeeg-d~vrvL-PCgH~FHk~CId~WLkk-------~~~TCPLCR~eV~~~  522 (534)
                      ...|.||....... ..++.. -|...||..|+.+.+..       ..-.||.|.......
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~~~   76 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM   76 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHhhh
Confidence            35699998754332 233333 39999999998754421       134699997655433