Citrus Sinensis ID: 043463

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRVRSAIP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccccccEEEEcEEcccccccEEEccccEEEEEEEEccccEEEEEEEEEEcccEEEEEEEccccccccccEEEEEEEcccEEEcccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEEccccccccEEEccccEEEEEEEccccccEEEEEEEEccccEEEEEEEEEccccccccEEEEEEcccccEEEccccccEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MGSFTIHDLLVILFVFPLfayvigedseglkeDVRHIRitnkidpgvdltfecksrdddfgkkvlHYNTYwefqfrpnfwgttRYYCWFAWrnefkwfdiydhnrdarecrhcvwtiqpdgpcmlnkaennydicyfwnrpdrvrsaip
Flexible Loop (DISEMBL)
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRitnkidpgvdltfeCKSRDDDFGKKVLHYNTywefqfrpnfWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRVRSAIP
Low Complexity Region (SEG)
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRVRSAIP
Disordered region (IsUnstruct)
***FTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNR*********
Disordered Region (DISOPRED)
*****IHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPD*******
Disordered Region (DISEMBL)
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRVRSAIP
Disordered Region (DISPRO)
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRV*****
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNRPDRVRSAIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
O81465	477	Pumilio homolog 15 OS=Ara	no	no	0.496	0.155	0.317	0.0006

>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 8/82 (9%)

Query: 6  IHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVL 65
          + +L + +FVF L  +  G  S         IRI N++    +L   C S+DD  G  ++
Sbjct: 1  MKNLSIFMFVFSLCMF--GHVSRA------RIRIANELKFKKNLWMRCYSKDDVLGPHII 52

Query: 66 HYNTYWEFQFRPNFWGTTRYYC 87
              ++   F  NFWGTTR+ C
Sbjct: 53 PIGGHFLDYFGTNFWGTTRFMC 74

Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
296090061	161	unnamed protein product [Vitis vinifera]	0.879	0.813	0.439	3e-25
255554240	139	conserved hypothetical protein [Ricinus	0.926	0.992	0.388	8e-25
255554234	126	conserved hypothetical protein [Ricinus	0.832	0.984	0.446	1e-24
224118600	142	predicted protein [Populus trichocarpa]	0.859	0.901	0.407	2e-23
296090057	185	unnamed protein product [Vitis vinifera]	0.691	0.556	0.509	8e-23
296090055	172	unnamed protein product [Vitis vinifera]	0.865	0.75	0.431	1e-22
255554242	238	conserved hypothetical protein [Ricinus	0.697	0.436	0.438	6e-22
296090056	170	unnamed protein product [Vitis vinifera]	0.845	0.741	0.425	6e-22
15239857	150	self-incompatibility S1 family protein [	0.892	0.886	0.384	1e-21
255565862	133	conserved hypothetical protein [Ricinus	0.731	0.819	0.469	2e-21

>gi|296090061|emb|CBI39880.3| unnamed protein product [Vitis vinifera]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 8   DLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHY 67
           D  +  FV  +F   + +   G+ E    ++I N +D G DL   CKS++DD G  VL +
Sbjct: 5   DRYLFSFVLLVFLVRLCDGGPGVVEKKVDLKIINGLDAGTDLNVHCKSKNDDLGAHVLAF 64

Query: 68  NTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDAREC-RHCVWTIQPDGPCMLN 126
           + ++EF+FRPNFWGTT Y+C F W +E  WFDIY   RDA  C + C W +  DGPC+LN
Sbjct: 65  DQFFEFRFRPNFWGTTLYFCRFWWNSESHWFDIYVQKRDAGRCNKKCWWYVGADGPCLLN 124

Query: 127 KAENNYDICYFW 138
                YDIC  W
Sbjct: 125 DKIGVYDICENW 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554240|ref|XP_002518160.1| conserved hypothetical protein [Ricinus communis] gi|223542756|gb|EEF44293.1| conserved hypothetical protein [Ricinus communis]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 54/139 (38%), Positives = 79/139 (56%), Gaps = 1/139 (0%)

Query: 1   MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDF 60
           M   +I   L +  +F L    +  D+  +    + ++ITN + P + L   CKS++DD 
Sbjct: 1   MSRLSIRCWLQLAVLFMLLMTTV-SDASFIVPKKKTVKITNDLGPKLGLKLHCKSKNDDL 59

Query: 61  GKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPD 120
           G++ + Y   + F+FRPN WGTTR+YC   W+N  +WFDIY  +RD   C  C W IQ  
Sbjct: 60  GEQQVPYKGSFSFRFRPNPWGTTRFYCQMKWQNIIRWFDIYVDDRDFERCVVCEWRIQAS 119

Query: 121 GPCMLNKAENNYDICYFWN 139
           GPC+LN     +DIC+ WN
Sbjct: 120 GPCLLNSDTGKFDICFPWN 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554234|ref|XP_002518157.1| conserved hypothetical protein [Ricinus communis] gi|223542753|gb|EEF44290.1| conserved hypothetical protein [Ricinus communis]

 Score =  117 bits (293), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/130 (44%), Positives = 75/130 (57%), Gaps = 6/130 (4%)

Query: 1   MGSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDF 60
           M SF I   LVIL      A +      G       +RITN++D G+DLT  CKSR+DD 
Sbjct: 1   MSSF-IKQYLVILL-----ALLTTRGEAGFSPSKTLVRITNEMDGGLDLTIHCKSRNDDL 54

Query: 61  GKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPD 120
           G ++LH    +EF FR NFW TT+YYC F W  +F+WFDIY   RD  +C  C W I+  
Sbjct: 55  GAQLLHPQGSFEFHFRVNFWETTQYYCSFHWTGQFQWFDIYIAARDDFKCNECFWKIKQT 114

Query: 121 GPCMLNKAEN 130
           GPCM+++   
Sbjct: 115 GPCMMDRVSG 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118600|ref|XP_002331402.1| predicted protein [Populus trichocarpa] gi|222873616|gb|EEF10747.1| predicted protein [Populus trichocarpa]

 Score =  113 bits (283), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 76/130 (58%), Gaps = 2/130 (1%)

Query: 11  VILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTY 70
           ++L  + L  +   +    L+ DV H+ ITN++  G+DLT +CKSRDDD G  V+ ++ Y
Sbjct: 10  ILLISYVLLIFTTCDAFCFLRTDV-HLNITNQLGSGLDLTVQCKSRDDDLGVHVVPFDGY 68

Query: 71  WEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCM-LNKAE 129
           +   F  N WGTT++YC   W  +  WFDI+   RD+  C  C W I P+GPCM  N  E
Sbjct: 69  YTMDFCSNIWGTTQFYCGMTWSGKLHWFDIFIAERDSHRCGDCTWRILPEGPCMTCNIGE 128

Query: 130 NNYDICYFWN 139
           +   +CY WN
Sbjct: 129 SKEYVCYQWN 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090057|emb|CBI39876.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (278), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 37  IRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFK 96
           +RITN +  G+DL   CKS+DDD G  VL  + ++EF FRPNFW +T Y+C F WR E  
Sbjct: 48  LRITNDLGNGLDLNLHCKSQDDDLGVHVLASHQFFEFSFRPNFWSSTLYFCRFWWRGESH 107

Query: 97  WFDIYDHNRDAREC-RHCVWTIQPDGPCMLNKAENNYDICYFWN 139
           WFDIY  NRD   C + C W I P GPC+LN     Y  C  WN
Sbjct: 108 WFDIYVQNRDVGRCSKKCWWMIDPTGPCLLNDKVKRYTYCENWN 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090055|emb|CBI39874.3| unnamed protein product [Vitis vinifera]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/132 (43%), Positives = 76/132 (57%), Gaps = 3/132 (2%)

Query: 13  LFVFPLFAYVIGEDSEG--LKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTY 70
           LF F L  +++     G  + E    +RITN +  G+DL   C+S DDD G  VL  + +
Sbjct: 9   LFSFVLLVFLVRLCDGGPWVVEKKVDLRITNDLGSGLDLNLHCQSDDDDLGTHVLAPDQF 68

Query: 71  WEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDAREC-RHCVWTIQPDGPCMLNKAE 129
           +EF+FRPNFWGTT Y+C F W  E  WF+IY   RD   C   C W + P GPC+L++  
Sbjct: 69  FEFRFRPNFWGTTLYFCKFWWGGESHWFNIYVEKRDTSRCDSKCWWMVGPVGPCLLDRRF 128

Query: 130 NNYDICYFWNRP 141
             YD+C  WN P
Sbjct: 129 GIYDLCENWNDP 140

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554242|ref|XP_002518161.1| conserved hypothetical protein [Ricinus communis] gi|223542757|gb|EEF44294.1| conserved hypothetical protein [Ricinus communis]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 69/105 (65%), Gaps = 1/105 (0%)

Query: 37  IRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNE-F 95
           + ITN ++ G+DL+  CKS++DD G  +L  +  ++F+F+PNFWG T+++C F W+    
Sbjct: 134 VIITNDLNQGLDLSVHCKSKEDDLGVHILPPHNNYQFEFQPNFWGVTQFFCGFTWKKTGI 193

Query: 96  KWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWNR 140
            WFDIY  NRD  +C  C W ++  GPCM  +  NNY +CY WN+
Sbjct: 194 HWFDIYIQNRDYPKCSTCKWVLRQKGPCMFEEKTNNYTLCYDWNK 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090056|emb|CBI39875.3| unnamed protein product [Vitis vinifera]

 Score =  108 bits (271), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 13  LFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWE 72
           LF F L  +++      + E   H+RI N +  G DL   CKS+DDD G  VL  + ++E
Sbjct: 8   LFSFVLLVFLVRWCDGAIIEKKVHVRIINDLGNGSDLNLHCKSKDDDLGVHVLAPHQFFE 67

Query: 73  FQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDAREC-RHCVWTIQPDGPCMLNKAENN 131
           F FRPNFW TT Y+C F W +E  WFDIY   RD   C + C WT+   GPC+L+     
Sbjct: 68  FSFRPNFWVTTLYFCRFWWGDESHWFDIYVERRDVGRCNKQCWWTVAAVGPCLLDARVQR 127

Query: 132 YDICYFW 138
           Y +C  W
Sbjct: 128 YTLCENW 134

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239857|ref|NP_196767.1| self-incompatibility S1 family protein [Arabidopsis thaliana] gi|9759373|dbj|BAB10024.1| unnamed protein product [Arabidopsis thaliana] gi|67633800|gb|AAY78824.1| self-incompatibility protein-related [Arabidopsis thaliana] gi|332004374|gb|AED91757.1| self-incompatibility S1 family protein [Arabidopsis thaliana]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 5/138 (3%)

Query: 6   IHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVL 65
           +H +++ L +   F+ V   D +      + +RITN++  G+ L   CKS DDD G K+L
Sbjct: 9   VHVVVIYLLIKIAFSQV-KTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKIL 67

Query: 66  HYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDAR----ECRHCVWTIQPDG 121
             N  W F+FR +  GTT +YC F W  + K FDIYD +RD       C +C+W I   G
Sbjct: 68  APNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGVRSHISCINCIWDISIQG 127

Query: 122 PCMLNKAENNYDICYFWN 139
           PCM +++++ ++ICY WN
Sbjct: 128 PCMFSESDHAFNICYDWN 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565862|ref|XP_002523920.1| conserved hypothetical protein [Ricinus communis] gi|223536850|gb|EEF38489.1| conserved hypothetical protein [Ricinus communis]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 65/113 (57%), Gaps = 4/113 (3%)

Query: 27  SEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYY 86
           SEG++    HI I N    GVDLT  CKS+DDD G  +LH    + F F+PN+WG T +Y
Sbjct: 25  SEGIR--TVHINIINNF--GVDLTVHCKSKDDDLGAHLLHDQEAYRFGFKPNYWGNTLFY 80

Query: 87  CWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAENNYDICYFWN 139
           C FAW  E KWFDIY   RD   C  C W +  +GPC L+      + CY WN
Sbjct: 81  CSFAWTGEVKWFDIYVDERDYGRCLDCKWRVDENGPCFLDNDTGEVNKCYQWN 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2176982	150	AT5G12060 "AT5G12060" [Arabido	0.892	0.886	0.391	7.6e-25
TAIR|locus:2086107	140	AT3G16970 "AT3G16970" [Arabido	0.671	0.714	0.443	6.1e-23
TAIR|locus:2176987	152	AT5G12070 "AT5G12070" [Arabido	0.885	0.868	0.368	2.1e-22
TAIR|locus:504955469	135	AT4G24975 "AT4G24975" [Arabido	0.859	0.948	0.392	1.5e-21
TAIR|locus:504955438	161	AT4G16195 "AT4G16195" [Arabido	0.711	0.658	0.396	6.3e-21
TAIR|locus:505006099	128	AT1G04645 "AT1G04645" [Arabido	0.818	0.953	0.395	1.7e-20
TAIR|locus:4515103448	132	AT4G24974 "AT4G24974" [Arabido	0.852	0.962	0.347	1.7e-20
TAIR|locus:4515103447	134	AT4G24973 [Arabidopsis thalian	0.697	0.776	0.425	9.2e-20
TAIR|locus:2086077	134	AT3G17080 "AT3G17080" [Arabido	0.677	0.753	0.4	7.5e-18
TAIR|locus:1006230771	151	AT1G26799 "AT1G26799" [Arabido	0.879	0.867	0.307	3e-14

TAIR|locus:2176982 AT5G12060 "AT5G12060" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 54/138 (39%), Positives = 81/138 (58%)

Query:     6 IHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVL 65
             +H +++ L +   F+ V   D +      + +RITN++  G+ L   CKS DDD G K+L
Sbjct:     9 VHVVVIYLLIKIAFSQV-KTDFDVNWSTSKMVRITNRLGDGLTLNLHCKSADDDLGLKIL 67

Query:    66 HYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDA-RE---CRHCVWTIQPDG 121
               N  W F+FR +  GTT +YC F W  + K FDIYD +RD  R    C +C+W I   G
Sbjct:    68 APNGSWSFKFRTSIVGTTLFYCHFTWPGQSKRFDIYDDDRDGVRSHISCINCIWDISIQG 127

Query:   122 PCMLNKAENNYDICYFWN 139
             PCM +++++ ++ICY WN
Sbjct:   128 PCMFSESDHAFNICYDWN 145

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2086107 AT3G16970 "AT3G16970" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 47/106 (44%), Positives = 63/106 (59%)

Query:    39 ITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWF 98
             I N +   + L + CKS++DD G + +  N  W F+FRP+ +G T ++C F W  E  WF
Sbjct:    32 IYNDLGGHLPLRYHCKSKNDDLGDRNMAVNGTWSFEFRPSVFGGTLFFCGFIWDKELHWF 91

Query:    99 DIYDHNRDARE-----CRHCVWTIQPDGPCMLNKAENNYDICYFWN 139
             DIY  +RD RE     CR C W I+ DGPC LNK  N +D+C  WN
Sbjct:    92 DIYKQSRD-REFAEFGCRRCEWKIRKDGPCKLNKNSNMFDVCLPWN 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176987 AT5G12070 "AT5G12070" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 52/141 (36%), Positives = 79/141 (56%)

Query:     6 IHDLLVILFVFPLFAYVI-GEDSE-GLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKK 63
             +H +++ L +   F+ V  G D +    + V  + ITN++  G  L   CKS DDD G K
Sbjct:     9 VHVVVIYLLIQIAFSQVKPGSDLKWSTLKSV--VTITNRLGDGSTLKLHCKSADDDLGLK 66

Query:    64 VLHYNTYWEFQFRPNFW-GTTRYYCWFAWRNEFKWFDIYDHNRDARE----CRHCVWTIQ 118
             +L  N  W F+FRP+   G T ++C F W  + KWF+IYD +RD       C +C+W I 
Sbjct:    67 ILAPNGSWSFKFRPSIVPGVTLFFCHFTWPGQSKWFNIYDDDRDGVRMGIPCIYCIWDIG 126

Query:   119 PDGPCMLNKAENNYDICYFWN 139
               GPC  ++ ++ ++ICY WN
Sbjct:   127 KYGPCRFSEIDDAFNICYDWN 147

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955469 AT4G24975 "AT4G24975" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 55/140 (39%), Positives = 72/140 (51%)

Query:     2 GSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFG 61
             GS   H +L + F+  LF    G    G+   V ++ I N I P V L   CKS+D D G
Sbjct:     3 GSSAFHIILSVTFMVFLFG---GLCEAGV---VVNVDIINDIGPNVQLGLHCKSKDKDLG 56

Query:    62 KKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDAREC-RH-CVWTIQP 119
              + L    +W F+   +FWG T ++C F W N+ KWFDI    RD   C  H CVW+I+P
Sbjct:    57 PQSLAPQQHWGFRKTLDFWGVTLFFCHFEWENQSKWFDILVAGRDRNTCAEHPCVWSIRP 116

Query:   120 DGPCMLNKAENNYDICYFWN 139
              GPC L   E     C+ WN
Sbjct:   117 SGPCRLTGKEK----CFPWN 132

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955438 AT4G16195 "AT4G16195" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 44/111 (39%), Positives = 61/111 (54%)

Query:    35 RHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNE 94
             R + I N +   + L + CKS+DDD G + L     W F F   F+G T Y+C F+W NE
Sbjct:    48 RTVEINNDLGNQLTLLYHCKSKDDDLGNRTLQPGESWSFSFGRQFFGRTLYFCSFSWPNE 107

Query:    95 FKWFDIYDHNRDA---RECR--HCVWTIQPDGPCMLNKAENNYDICYFWNR 140
                FDIY  +RD+    +C    CVW I+ +GPC  N     +D+CY WN+
Sbjct:   108 SHSFDIYKDHRDSGGDNKCESDRCVWKIRRNGPCRFNDETKQFDLCYPWNK 158

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006099 AT1G04645 "AT1G04645" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 51/129 (39%), Positives = 68/129 (52%)

Query:    10 LVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNT 69
             +V  F F LF    G      +  V  + +TN I  G  LT  CKS+ DD G  V+ +  
Sbjct:     6 IVCFFFFLLFGSGYGGLPPFWRATV--VTMTNLIG-GPPLTIHCKSKQDDLGIHVVPFKQ 62

Query:    70 YWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDGPCMLNKAE 129
              + F+F+PN W +T ++C F W ++FK FDIYD  RD   C  C W I+PDGPC L K  
Sbjct:    63 EYHFKFQPNLWKSTLFFCSFQWDSQFKSFDIYDAQRDQGICDDCQWEIKPDGPCRLGKKA 122

Query:   130 NNYDICYFW 138
                  C+ W
Sbjct:   123 K----CFPW 127

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103448 AT4G24974 "AT4G24974" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/138 (34%), Positives = 71/138 (51%)

Query:     2 GSFTIHDLLVILFVFPLFAYVIGEDSEGLKEDVRHIRITNKIDPGVDLTFECKSRDDDFG 61
             GS   H ++ + F+   F  +   ++ G+  D     + N I P V L   CKS++ D G
Sbjct:     3 GSLAFHIIMSVTFMVFFFGGLC--EARGVNVD-----LINDIGPNVQLGLHCKSKNKDLG 55

Query:    62 KKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARECRHCVWTIQPDG 121
              + L  + +W F+    FW  T ++C F W N+ KWFDI+  +RD     HCVW+I+P G
Sbjct:    56 SQSLVSDQHWGFRASLGFWTVTLFFCHFEWENQSKWFDIFVEDRDLTCGDHCVWSIRPSG 115

Query:   122 PCMLNKAENNYDICYFWN 139
             PC L   E     C+ WN
Sbjct:   116 PCRLTGREK----CFPWN 129

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4515103447 AT4G24973 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 46/108 (42%), Positives = 58/108 (53%)

Query:    29 GLKEDVRHIR--ITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYY 86
             GL E  RHI   I N I P V L   CKS+  D G + L  + +W F    N W TT ++
Sbjct:    21 GLCEAHRHINVDIINDIGPNVQLGLHCKSKGKDLGPQSLAPHQHWGFTASLNVWETTLFF 80

Query:    87 CWFAWRNEFKWFDIYDHNRDARECRH--CVWTIQPDGPCMLNKAENNY 132
             C F W N+ +WFDI    RD   C++  CVW+I+P GPC L   E  Y
Sbjct:    81 CHFVWENQSRWFDILKEKRDTIVCKYHPCVWSIRPSGPCRLTDHEKCY 128

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2086077 AT3G17080 "AT3G17080" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 42/105 (40%), Positives = 57/105 (54%)

Query:    39 ITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWF 98
             I N +  G+ L   CKSR+DD G + L     W F F P+ +G T +YC F+W  E   F
Sbjct:    30 IYNDLGGGLPLRHHCKSREDDLGYQSLAPGRSWSFGFTPDIFGRTLFYCRFSWGAESHIF 89

Query:    99 DIYDHNRDA--RE--CRHCVWTIQPDGPCMLNKAENNYDICYFWN 139
             DIY  +RD   +E  C+ C W I+ +GPC   K    +D CY W+
Sbjct:    90 DIYKQSRDKEFQEFGCKKCEWKIRKNGPCKFYKKTGMFDHCYSWD 134

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1006230771 AT1G26799 "AT1G26799" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/140 (30%), Positives = 65/140 (46%)

Query:     9 LLVILFVFPLFAYVIGEDS-EG-LKEDVRHIRITNKIDPGVDLTFECKSRDDDFGKKVLH 66
             LL  LF+    + +    S +G L    +H+ I N +     L   C +++ D G + L 
Sbjct:    13 LLSFLFILKKLSSLGNHSSNDGILLFSPKHVVIYNTLTSRATLVVHCVNKEKDLGIQKLP 72

Query:    67 YNTYWEFQFRPNFWGTTRYYCWFAWRNEFKWFDIYDHNRDARE------CRHCVWTIQPD 120
                 ++F+FR N   TT Y C F W    + FDI+  +RD  E      CR C+W I   
Sbjct:    73 IGASFDFRFRVNLRKTTTYNCTFEWPGSIEKFDIFRADRDDNETSPIGICRECIWYIYEP 132

Query:   121 GPCMLNKAENNYDICYFWNR 140
              PC   K +  + IC+ W+R
Sbjct:   133 APCR-EKRDGGHSICFTWDR 151

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam05938	108	pfam05938, Self-incomp_S1, Plant self-incompatibil	3e-28

>gnl|CDD|218817 pfam05938, Self-incomp_S1, Plant self-incompatibility protein S1

 Score = 99.7 bits (249), Expect = 3e-28
 Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 3/107 (2%)

Query: 36  HIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNE- 94
           H+ I N++  G  L   CKS+DDD G   L     + F FR NFWGTT +YC F W N  
Sbjct: 2   HVVIKNELGNGKSLNIHCKSKDDDLGVHRLKPGQSFGFSFRDNFWGTTLFYCTFRWPNGK 61

Query: 95  -FKWFDIYDHNRDARECRH-CVWTIQPDGPCMLNKAENNYDICYFWN 139
             + FD Y   RD   C   C+W+ + DG     +      +CY W+
Sbjct: 62  YHQSFDAYRAKRDDNRCGETCIWSAREDGIYFRRRKYGPDQLCYDWD 108

This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PF05938	110	Self-incomp_S1: Plant self-incompatibility protein	100.0
TIGR02376	311	Cu_nitrite_red nitrite reductase, copper-containin	90.11
PRK02710	119	plastocyanin; Provisional	88.91
PF07732	117	Cu-oxidase_3: Multicopper oxidase; InterPro: IPR01	85.46

>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein

Probab=100.00  E-value=4.2e-37  Score=219.13  Aligned_cols=105  Identities=42%  Similarity=0.911  Sum_probs=97.2

Q ss_pred             eEEEEEeCCCCCcceEEeeeeCCCCCcceEecCCCEEEEEEeeCCCCcceEEEEeEeCCc--eeEEEEEeecCCCCC--C
Q 043463           35 RHIRITNKIDPGVDLTFECKSRDDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFAWRNE--FKWFDIYDHNRDARE--C  110 (149)
Q Consensus        35 ~~V~I~N~L~~~~~L~vhCkS~d~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~~--~~~fd~y~~~rd~~~--C  110 (149)
                      ++|+|+|+|+++..|.|||+|+|+|||.|.|+||++|+|+|+++++++|+|+|+|+|.+.  .+.|+||++.+|..+  |
T Consensus         1 ~~V~I~N~L~~~~~L~vhC~S~d~Dlg~~~l~~g~~~~~~F~~~~~~~t~f~C~~~~~~~~~~~~f~vy~~~~~~~~c~c   80 (110)
T PF05938_consen    1 NHVVIINNLGPGKILTVHCKSKDDDLGWHVLKPGQSYSFSFRDNFFGTTLFWCHFRWPGGKYHHSFDVYRSSRDSRRCRC   80 (110)
T ss_pred             CEEEEEECCCCCCeEEEEeeCCCccCCCEECCCCCEEEEEEecCcCCceeEEEEEEECCccEEEEEEEEeccccccCCCC
Confidence            479999999989999999999999999999999999999999999999999999999554  568999999999765  4


Q ss_pred             C-ceEEEEecCccEEeccCCCCcceEEeCC
Q 043463          111 R-HCVWTIQPDGPCMLNKAENNYDICYFWN  139 (149)
Q Consensus       111 ~-~c~W~~r~DGiy~~~~~~~~~~~~y~W~  139 (149)
                      + .|.|+||+||||+.+++..+++++|+|+
T Consensus        81 ~~~c~W~ir~dGiy~~~~~~~~~~~~y~W~  110 (110)
T PF05938_consen   81 GQTCNWSIREDGIYFSNNKNKPWKKCYPWN  110 (110)
T ss_pred             CcEEEEEEECCEeEEEcCCCccCcEEeCCC
Confidence            6 6999999999999999878889999997

Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].

>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing

Probab=90.11  E-value=1  Score=37.42  Aligned_cols=57  Identities=12%  Similarity=0.110  Sum_probs=41.9

Q ss_pred             cceEEEEEeCCCC--CcceEEeeeeCCCC-CcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463           33 DVRHIRITNKIDP--GVDLTFECKSRDDD-FGKKVLHYNTYWEFQFRPNFWGTTRYYCWF   89 (149)
Q Consensus        33 ~~~~V~I~N~L~~--~~~L~vhCkS~d~D-lG~~~L~~g~~~~f~F~~~~~~~T~f~C~f   89 (149)
                      ..+.|.++|++..  ...+.+|-....++ -+...++||+++.+.|..+-.|+-.|.|+.
T Consensus        67 d~v~v~v~N~~~~~~~h~~h~H~~~~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~  126 (311)
T TIGR02376        67 DYVELTLINPPTNTMPHNVDFHAATGALGGAALTQVNPGETATLRFKATRPGAFVYHCAP  126 (311)
T ss_pred             CEEEEEEEeCCCCCCceeeeecCCCccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCC
Confidence            5678899999852  24577776543333 344559999999999998777888888994

This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.

>PRK02710 plastocyanin; Provisional

Probab=88.91  E-value=5.2  Score=28.40  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             EecCCCEEEEEEeeCCCCcceEEEEeEeCCcee
Q 043463           64 VLHYNTYWEFQFRPNFWGTTRYYCWFAWRNEFK   96 (149)
Q Consensus        64 ~L~~g~~~~f~F~~~~~~~T~f~C~f~w~~~~~   96 (149)
                      .+.||+++++.|.+  .|+-.|+|......+++
T Consensus        83 ~~~pg~t~~~tF~~--~G~y~y~C~~H~~~gM~  113 (119)
T PRK02710         83 AFAPGESWEETFSE--AGTYTYYCEPHRGAGMV  113 (119)
T ss_pred             ccCCCCEEEEEecC--CEEEEEEcCCCccCCcE
Confidence            47899999999998  58889999954433433

>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties

Probab=85.46  E-value=2.2  Score=30.35  Aligned_cols=58  Identities=17%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             cceEEEEEeCCCCCcceEEeeeeCCC--------CCcceEecCCCEEEEEEeeCC-CCcceEEEEeE
Q 043463           33 DVRHIRITNKIDPGVDLTFECKSRDD--------DFGKKVLHYNTYWEFQFRPNF-WGTTRYYCWFA   90 (149)
Q Consensus        33 ~~~~V~I~N~L~~~~~L~vhCkS~d~--------DlG~~~L~~g~~~~f~F~~~~-~~~T~f~C~f~   90 (149)
                      ..+.|.++|+|.....|..|=-....        +.....+.||+++.++|..+- .|+=-|.|+..
T Consensus        34 d~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~  100 (117)
T PF07732_consen   34 DTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVH  100 (117)
T ss_dssp             EEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECST
T ss_pred             CeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCC
Confidence            57789999999766678887544221        222345899999999999886 56545556653

Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3gdc_A	288	Multicopper oxidase; beta sandwich, plasmid, oxido	80.96

>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}

Probab=80.96  E-value=1.6  Score=34.30  Aligned_cols=58  Identities=22%  Similarity=0.355  Sum_probs=42.5

Q ss_pred             cceEEEEEeCCCCCcceEEeeeeC---C--CCCcceEecCCCEEEEEEeeCCCCcceEEEEeE
Q 043463           33 DVRHIRITNKIDPGVDLTFECKSR---D--DDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWFA   90 (149)
Q Consensus        33 ~~~~V~I~N~L~~~~~L~vhCkS~---d--~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f~   90 (149)
                      ..+.|+++|.|.....+..|--..   |  ..+....+.||+++.+.|..+-.|+-.|.|+..
T Consensus        74 d~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~  136 (288)
T 3gdc_A           74 DALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQS  136 (288)
T ss_dssp             CEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCS
T ss_pred             CEEEEEEEeCCCCcccEEeccccccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCc
Confidence            567899999998666777776431   1  112225589999999999987677777889885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d1oe2a1	159	Nitrite reductase, NIR {Alcaligenes xylosoxidans [	88.89
d1kbva1	151	Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani	85.9
d1mzya1	153	Nitrite reductase, NIR {Rhodobacter sphaeroides [T	80.69

>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Alcaligenes xylosoxidans [TaxId: 85698]

Probab=88.89  E-value=0.16  Score=35.28  Aligned_cols=57  Identities=14%  Similarity=0.147  Sum_probs=40.2

Q ss_pred             cceEEEEEeCCCCC--cceEEeeeeC-CCCCcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463           33 DVRHIRITNKIDPG--VDLTFECKSR-DDDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWF   89 (149)
Q Consensus        33 ~~~~V~I~N~L~~~--~~L~vhCkS~-d~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f   89 (149)
                      ..+.|.++|++...  ..+.+|-... .++.....+.||+++.+.|..+-.|+-.|.|+.
T Consensus        73 d~v~v~~~N~~~~~h~h~ih~hg~~~~~~g~~~~~I~PG~t~ty~f~a~~~Gt~~yH~H~  132 (159)
T d1oe2a1          73 DYVQLTLVNPATNAMPHNVEFHGATGALGGAKLTNVNPGEQATLRFKADRSGTFVYHCAP  132 (159)
T ss_dssp             CEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             cEEEEEEECCCccccccceeeccccCCCCCcccccCCCCCeEEEEEEcCCCceEEEEeCC
Confidence            57789999998643  2355565432 123344568999999999987767877888974

>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Neisseria gonorrhoeae, AniA [TaxId: 485]

Probab=85.90  E-value=0.25  Score=33.84  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=40.1

Q ss_pred             cceEEEEEeCCCCC--cceEEeeeeCC-CCCcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463           33 DVRHIRITNKIDPG--VDLTFECKSRD-DDFGKKVLHYNTYWEFQFRPNFWGTTRYYCWF   89 (149)
Q Consensus        33 ~~~~V~I~N~L~~~--~~L~vhCkS~d-~DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f   89 (149)
                      ..+.|+++|++...  ..+.+|=.+.+ .+.....+.||+++.++|..+-.|+-.|.|+.
T Consensus        66 d~v~v~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~~y~f~a~~~Gt~~YH~H~  125 (151)
T d1kbva1          66 DTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAV  125 (151)
T ss_dssp             CEEEEEEEECTTCSSCBCCEETTCCSGGGGTTTTCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CEEEEEEEcCCCCceeeeccccccccCCCCcceeeeCCCCEEEEEEeCCCCeEEEEECCC
Confidence            57789999987643  34666644432 23333348899999999998777888888984

>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Multidomain cupredoxins
domain: Nitrite reductase, NIR
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=80.69  E-value=0.64  Score=31.77  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=39.4

Q ss_pred             cceEEEEEeCCCCC--cceEEeeeeCCC-CCcceEecCCCEEEEEEeeCCCCcceEEEEe
Q 043463           33 DVRHIRITNKIDPG--VDLTFECKSRDD-DFGKKVLHYNTYWEFQFRPNFWGTTRYYCWF   89 (149)
Q Consensus        33 ~~~~V~I~N~L~~~--~~L~vhCkS~d~-DlG~~~L~~g~~~~f~F~~~~~~~T~f~C~f   89 (149)
                      ..+.|+++|++...  ..+.+|=-...+ +-+...+.||+++.+.|..+-.|+-.|.|+.
T Consensus        70 d~v~i~~~N~~~~~~~H~~~~h~~~~~~~~~~~~~i~PG~t~ty~f~a~~~Gt~~YH~H~  129 (153)
T d1mzya1          70 DYVELTLINPPENTMPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAP  129 (153)
T ss_dssp             CEEEEEEEECTTCCSCBCCEETTSCSGGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCC
T ss_pred             CEEEEEEEcCCCCceEccCccccCCcCCCCCccccccCCCEEEEEEEcCCCceEEEEeCC
Confidence            57789999976532  335666443222 2233458999999999998767877888984