Citrus Sinensis ID: 043471
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FR44 | 491 | Phosphoethanolamine N-met | yes | no | 0.931 | 0.920 | 0.845 | 0.0 | |
| Q9M571 | 494 | Phosphoethanolamine N-met | N/A | no | 0.931 | 0.914 | 0.811 | 0.0 | |
| Q944H0 | 475 | Phosphoethanolamine N-met | no | no | 0.913 | 0.932 | 0.832 | 0.0 | |
| Q9C6B9 | 490 | Phosphoethanolamine N-met | no | no | 0.931 | 0.922 | 0.787 | 0.0 | |
| Q8KZ94 | 283 | Demethylrebeccamycin-D-gl | N/A | no | 0.241 | 0.413 | 0.369 | 5e-16 | |
| Q9KJ20 | 565 | Glycine/sarcosine/dimethy | N/A | no | 0.381 | 0.327 | 0.287 | 3e-14 | |
| Q6ZIX2 | 344 | Cycloartenol-C-24-methylt | no | no | 0.342 | 0.482 | 0.329 | 3e-13 | |
| Q9LM02 | 336 | Cycloartenol-C-24-methylt | no | no | 0.251 | 0.363 | 0.352 | 1e-12 | |
| A4F7P5 | 306 | Erythromycin 3''-O-methyl | yes | no | 0.404 | 0.640 | 0.261 | 8e-12 | |
| Q6ZIK0 | 362 | Probable tocopherol O-met | no | no | 0.265 | 0.356 | 0.330 | 1e-11 |
| >sp|Q9FR44|PEAM1_ARATH Phosphoethanolamine N-methyltransferase 1 OS=Arabidopsis thaliana GN=NMT1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/452 (84%), Positives = 426/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLPPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFID+VIKKNE +NGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDNVIKKNESINGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSKVF+
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDNVQYK
Sbjct: 188 ECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYMA+KFDVH
Sbjct: 248 SSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYMAEKFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGL CSVEFEVADCT K YP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLSCSVEFEVADCTTKHYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKDAGFTDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AEDRTDQFMQVLKRELDRVEKEKEKFISDFSK 459
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Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 3 |
| >sp|Q9M571|PEAMT_SPIOL Phosphoethanolamine N-methyltransferase OS=Spinacia oleracea GN=PEAMT PE=1 SV=1 | Back alignment and function description |
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Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/452 (81%), Positives = 417/452 (92%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ERE+ K YW+EHS +LTVEAMMLDS+ASDLDK ERPEVLS+LPPYEGK+VLE GAGIGRF
Sbjct: 11 EREVFKKYWIEHSVDLTVEAMMLDSQASDLDKVERPEVLSMLPPYEGKSVLELGAGIGRF 70
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KA VIALDFI+SVIKKNE +NGH++NVKFMCADVTSP L S +SVD++FSNW
Sbjct: 71 TGELAEKASQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPSLNISPNSVDIIFSNW 130
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSD+EVE+L ERM+KWLK GGYIFFRESCFHQSGD KRK NPTHYREPRFY+K+FK
Sbjct: 131 LLMYLSDEEVERLVERMLKWLKPGGYIFFRESCFHQSGDHKRKSNPTHYREPRFYTKIFK 190
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
EC +QD SGNS+ELSL+G KCIGAYVK+KKNQNQI W+WQKV S++D+GFQ+FLD+ QYK
Sbjct: 191 ECHMQDDSGNSYELSLIGCKCIGAYVKSKKNQNQISWLWQKVDSEDDKGFQRFLDSSQYK 250
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
N ILRYERVFG G+VSTGG+ETTKEFV+KLDLKPGQKVLDVGCGIGGGDFYMA+ +DV
Sbjct: 251 FNSILRYERVFGPGYVSTGGLETTKEFVSKLDLKPGQKVLDVGCGIGGGDFYMAENYDVE 310
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLSINMISFALER+IGLKC+VEFEVADCTKK YPENSFDVIYSRDTILHIQDKPAL
Sbjct: 311 VVGIDLSINMISFALERSIGLKCAVEFEVADCTKKDYPENSFDVIYSRDTILHIQDKPAL 370
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F+SF KWLKPGG VLISDYCKS GTPS EF+ YI+QRGYDLHDVK+YG+MLKDAGFV++I
Sbjct: 371 FRSFHKWLKPGGKVLISDYCKSAGTPSAEFAAYIRQRGYDLHDVKAYGKMLKDAGFVEVI 430
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AE+RT+QF+QVLQ+ELDA+E++KD FI DFSE
Sbjct: 431 AENRTDQFIQVLQKELDALEQEKDDFIDDFSE 462
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Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. Mediates a key step in the biosynthesis of choline, a precursor of the osmoprotectant glycine betaine. Has no ethanolamine- or phosphatidylethanolamine-N-methyltransferase activity. Spinacia oleracea (taxid: 3562) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 3 |
| >sp|Q944H0|PEAM2_ARATH Phosphoethanolamine N-methyltransferase 2 OS=Arabidopsis thaliana GN=NMT2 PE=2 SV=1 | Back alignment and function description |
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Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/443 (83%), Positives = 413/443 (93%)
Query: 18 MEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG 77
MEHS++LTVEAMMLDSKASDLDKEERPEVLSL+PPYEGK+VLE GAGIGRFTGELA+KAG
Sbjct: 1 MEHSSDLTVEAMMLDSKASDLDKEERPEVLSLIPPYEGKSVLELGAGIGRFTGELAQKAG 60
Query: 78 HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE 137
VIALDFI+S I+KNE VNGH++N+KFMCADVTSPDL + S+D++FSNWLLMYLSDKE
Sbjct: 61 EVIALDFIESAIQKNESVNGHYKNIKFMCADVTSPDLKIKDGSIDLIFSNWLLMYLSDKE 120
Query: 138 VEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197
VE +AERM+ W+K GGYIFFRESCFHQSGDSKRK NPTHYREPRFY+KVF+ECQ +DASG
Sbjct: 121 VELMAERMIGWVKPGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYTKVFQECQTRDASG 180
Query: 198 NSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYER 257
NSFELS+VG KCIGAYVKNKKNQNQICWIWQKV +ND+ FQ+FLDNVQYK +GILRYER
Sbjct: 181 NSFELSMVGCKCIGAYVKNKKNQNQICWIWQKVSVENDKDFQRFLDNVQYKSSGILRYER 240
Query: 258 VFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
VFG G+VSTGG ETTKEFVAK+DLKPGQKVLDVGCGIGGGDFYMA+ FDVHVVGIDLS+N
Sbjct: 241 VFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN 300
Query: 318 MISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLK 377
MISFALERAIGLKCSVEFEVADCT KTYP+NSFDVIYSRDTILHIQDKPALF++FFKWLK
Sbjct: 301 MISFALERAIGLKCSVEFEVADCTTKTYPDNSFDVIYSRDTILHIQDKPALFRTFFKWLK 360
Query: 378 PGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
PGG VLI+DYC+S TPS EF+EYIKQRGYDLHDV++YGQMLKDAGF D+IAEDRT+QFV
Sbjct: 361 PGGKVLITDYCRSAETPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFV 420
Query: 438 QVLQRELDAIEKDKDAFIKDFSE 460
QVL+REL+ +EK+K+ FI DFSE
Sbjct: 421 QVLRRELEKVEKEKEEFISDFSE 443
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Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 3 |
| >sp|Q9C6B9|PEAM3_ARATH Phosphoethanolamine N-methyltransferase 3 OS=Arabidopsis thaliana GN=NMT3 PE=2 SV=2 | Back alignment and function description |
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Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/452 (78%), Positives = 413/452 (91%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
EREIQKNYW EHS L+VEAMMLDSKASDLDKEERPE+L+ LPP EG TVLEFGAGIGRF
Sbjct: 7 EREIQKNYWKEHSVGLSVEAMMLDSKASDLDKEERPEILAFLPPIEGTTVLEFGAGIGRF 66
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
T ELA+KAG VIA+DFI+SVIKKNE +NGH++NVKF+CADVTSP++ F +S+D++FSNW
Sbjct: 67 TTELAQKAGQVIAVDFIESVIKKNENINGHYKNVKFLCADVTSPNMNFPNESMDLIFSNW 126
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSD+EVE LA++M++W KVGGYIFFRESCFHQSGD+KRK+NPTHYREP+FY+K+FK
Sbjct: 127 LLMYLSDQEVEDLAKKMLQWTKVGGYIFFRESCFHQSGDNKRKYNPTHYREPKFYTKLFK 186
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
EC + D GNS+ELSLV KCIGAYV+NKKNQNQICW+WQKV S NDRGFQ+FLDNVQYK
Sbjct: 187 ECHMNDEDGNSYELSLVSCKCIGAYVRNKKNQNQICWLWQKVSSDNDRGFQRFLDNVQYK 246
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV LDLKPGQKVLDVGCGIGGGDFYMA+ FDV
Sbjct: 247 SSGILRYERVFGEGFVSTGGLETTKEFVDMLDLKPGQKVLDVGCGIGGGDFYMAENFDVD 306
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALE AIGLKCSVEFEVADCTKK YP+N+FDVIYSRDTILHIQDKPAL
Sbjct: 307 VVGIDLSVNMISFALEHAIGLKCSVEFEVADCTKKEYPDNTFDVIYSRDTILHIQDKPAL 366
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F+ F+KWLKPGG VLI+DYC+S TPS +F+ YIK+RGYDLHDV++YGQML+DAGF ++I
Sbjct: 367 FRRFYKWLKPGGKVLITDYCRSPKTPSPDFAIYIKKRGYDLHDVQAYGQMLRDAGFEEVI 426
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF++VL+RELDA+EK+K+ FI DFS+
Sbjct: 427 AEDRTDQFMKVLKRELDAVEKEKEEFISDFSK 458
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Catalyzes N-methylation of phosphoethanolamine, phosphomonomethylethanolamine and phosphodimethylethanolamine, the three methylation steps required to convert phosphoethanolamine to phosphocholine. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 0 EC: 3 |
| >sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1 | Back alignment and function description |
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Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GL 329
T E +A LD++ G +VLDVGCGIG +A DV V GI +S ++ A RA GL
Sbjct: 60 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL 119
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
V F AD + + SFD +++ +++ H+ D+ + + L+PGGTV I+D+
Sbjct: 120 ANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 178
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Glycosyl O-methyltransferase that catalyzes the final step in the biosynthesis of rebeccamycin, an indolocarbazole alkaloid that inhibits topoisomerase 1. Has broad substrate specificity and functions as glycosyl O-methyltransferase on a number of rebeccamycin analogs. Lechevalieria aerocolonigenes (taxid: 68170) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase OS=Actinopolyspora halophila PE=1 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 3/188 (1%)
Query: 264 VSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSI--NMISF 321
++T T + K+D+ P ++LD+G G GG Y+A + HV ++LS N +
Sbjct: 335 IATASERTVQRMAGKVDISPETRILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNR 394
Query: 322 ALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT 381
+ RA GL+ +E Y +N+FDV++S+D+ LH D+ + + + LKP G+
Sbjct: 395 EITRAEGLEHLIEVTDGSFEDLPYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGS 454
Query: 382 VLISDYCKSFGTPSVEFSEYIKQRGYD-LHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVL 440
VL +D S E + + D L Y + L G +I ED +E
Sbjct: 455 VLFTDPMASDSAKKNELGPILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSEYLPVHY 514
Query: 441 QRELDAIE 448
R L+ +E
Sbjct: 515 GRVLEVLE 522
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Catalyzes the methylation of glycine, sarcosine and dimethylglycine to sarcosine, dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. Actinopolyspora halophila (taxid: 1850) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
| >sp|Q6ZIX2|SMT1_ORYSJ Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 90/176 (51%), Gaps = 10/176 (5%)
Query: 269 IETTKEFVA-KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA--LER 325
I+ + F+A +L +KPG KVLDVGCGIGG +A V G++ + I+ L R
Sbjct: 85 IKRHEHFLALQLGVKPGMKVLDVGCGIGGPLREIAKFSLASVTGLNNNEYQITRGKELNR 144
Query: 326 AIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
G+ + +F AD K + +N+FD +Y+ + H D +K ++ LKPG +
Sbjct: 145 VAGVSGTCDFVKADFMKMPFSDNTFDAVYAIEATCHAPDPVGCYKEIYRVLKPGQCFAVY 204
Query: 386 DYCKS-FGTPSVEFSEYIK---QRGYDLHDVKSYGQML---KDAGFVDIIAEDRTE 434
++C + P+ + IK + G L D++S Q L KDAGF I +D E
Sbjct: 205 EWCITDHYEPNNATHKRIKDEIELGNGLPDIRSTQQCLQAAKDAGFEVIWDKDLAE 260
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9LM02|SMT1_ARATH Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 269 IETTKEFVA-KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA--LER 325
I+ + F+A +L ++PGQKVLDVGCGIGG +A + V G++ + I+ L R
Sbjct: 79 IKRHEHFLALQLGIQPGQKVLDVGCGIGGPLREIARFSNSVVTGLNNNEYQITRGKELNR 138
Query: 326 AIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
G+ + F AD K +PENSFD +Y+ + H D +K ++ LKPG
Sbjct: 139 LAGVDKTCNFVKADFMKMPFPENSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAY 198
Query: 386 DYCKS 390
++C +
Sbjct: 199 EWCMT 203
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|A4F7P5|ERYG_SACEN Erythromycin 3''-O-methyltransferase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=eryG PE=1 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 226 IWQKVR--SQNDRGFQQFLDNVQYKLNGI---LRYERVFGVGFVSTGGIETTKEFVAKLD 280
+W +VR S+ ++ F D+ + G L Y + G + E +
Sbjct: 20 VWTRVRPSSRARLAYELFADDHEATTEGAYINLGYWKP-GCAGLEEANQELANQLAEAAG 78
Query: 281 LKPGQKVLDVGCGIGGGDF-YMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEV 337
+ G +VLDVG G+G DF ++ + +VG+DL+ + + A ERA ++ ++F+
Sbjct: 79 ISEGDEVLDVGFGLGAQDFFWLETRKPARIVGVDLTPSHVRIASERAERENVQDRLQFKE 138
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK-------S 390
T + +FD + S ++ LH + + FK F+ LKPGG + I D S
Sbjct: 139 GSATDLPFGAETFDRVTSLESALHYEPRTDFFKGAFEVLKPGGVLAIGDIIPLDLREPGS 198
Query: 391 FGTPSVEFSEYIKQRGYDLH---------DVKSYGQMLKDAGFVDI 427
G P + QR L ++Y + L++AGFVD+
Sbjct: 199 DGPPKL-----APQRSGSLSGGIPVENWVPRETYAKQLREAGFVDV 239
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S-adenosyl-L-methionine-dependent O-methyltransferase that catalyzes the last step in the erythromycin biosynthesis pathway. Methylates the position 3 of the mycarosyl moiety of erythromycin C, forming the most active form of the antibiotic, erythromycin A. Can also methylate the precursor erythromycin D, forming erythromycin B. Saccharopolyspora erythraea (strain NRRL 23338) (taxid: 405948) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 5 EC: 4 |
| >sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 269 IETTKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF--ALE 324
IE + F A D K + V+DVGCGIGG Y+A+K+ GI LS AL
Sbjct: 121 IEESLAFAAVPDDAEKKPKSVVDVGCGIGGSSRYLANKYGAQCYGITLSPVQAERGNALA 180
Query: 325 RAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
GL V F+V D ++ +P+ FD+++S ++ H+ DK + PG ++I
Sbjct: 181 AEQGLSDKVSFQVGDALEQPFPDGQFDLVWSMESGEHMPDKRQFVSELARVAAPGARIII 240
Query: 385 SDYCKSFGTPSVE 397
+C PS E
Sbjct: 241 VTWCHRNLEPSEE 253
|
Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| 255582633 | 492 | phosphoethanolamine n-methyltransferase, | 0.948 | 0.934 | 0.85 | 0.0 | |
| 30684743 | 491 | phosphoethanolamine N-methyltransferase | 0.931 | 0.920 | 0.845 | 0.0 | |
| 225456147 | 491 | PREDICTED: phosphoethanolamine N-methylt | 0.931 | 0.920 | 0.845 | 0.0 | |
| 297830436 | 491 | N-methyltransferase 1 [Arabidopsis lyrat | 0.931 | 0.920 | 0.847 | 0.0 | |
| 20260388 | 491 | unknown protein [Arabidopsis thaliana] | 0.931 | 0.920 | 0.842 | 0.0 | |
| 353529380 | 492 | phosphoethanolamine N-methyltransferase | 0.948 | 0.934 | 0.828 | 0.0 | |
| 9294501 | 498 | methyl transferase-like protein [Arabido | 0.931 | 0.907 | 0.832 | 0.0 | |
| 32478660 | 491 | phosphoethanolamine N-methyltransferase | 0.940 | 0.928 | 0.831 | 0.0 | |
| 147765575 | 490 | hypothetical protein VITISV_041321 [Viti | 0.931 | 0.922 | 0.836 | 0.0 | |
| 297847128 | 491 | hypothetical protein ARALYDRAFT_473996 [ | 0.931 | 0.920 | 0.829 | 0.0 |
| >gi|255582633|ref|XP_002532097.1| phosphoethanolamine n-methyltransferase, putative [Ricinus communis] gi|223528231|gb|EEF30287.1| phosphoethanolamine n-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2136), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/460 (85%), Positives = 426/460 (92%)
Query: 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLE 60
M N ERE+QKNYW+EHS +LTVEAMMLDSKASDLDKEERPEVLSLLP YEGK+VLE
Sbjct: 1 MAAAQNVEEREVQKNYWIEHSVDLTVEAMMLDSKASDLDKEERPEVLSLLPSYEGKSVLE 60
Query: 61 FGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120
FGAGIGRFTGELA+KAG ++A+DFI+SVIKKNE +NGH +NVKFMCADVTS L FSE+S
Sbjct: 61 FGAGIGRFTGELAQKAGQLVAVDFIESVIKKNENINGHHKNVKFMCADVTSQGLKFSEES 120
Query: 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180
VD++FSNWLLMYLSD+EV LAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP
Sbjct: 121 VDLIFSNWLLMYLSDEEVVNLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180
Query: 181 RFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQ 240
RFY+KVFKEC D SGNSFELSL+G KCIGAYV+NKKNQNQICW+WQKV SQ+D+GFQ+
Sbjct: 181 RFYTKVFKECHASDGSGNSFELSLIGCKCIGAYVRNKKNQNQICWVWQKVSSQDDKGFQR 240
Query: 241 FLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY 300
FLDNVQYK NGILRYERVFG GFVSTGG+ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY
Sbjct: 241 FLDNVQYKSNGILRYERVFGPGFVSTGGVETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY 300
Query: 301 MADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360
MA+ FDV V+GIDLSINMISFALERAIGLKC+VEFEVADCTKKTYP+NSFDVIYSRDTIL
Sbjct: 301 MAENFDVEVIGIDLSINMISFALERAIGLKCAVEFEVADCTKKTYPDNSFDVIYSRDTIL 360
Query: 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420
HIQDKPALF+SF+KWLKPGG VLISDYCKS GTPS EF+EYIKQRGYDLHDVK+YGQMLK
Sbjct: 361 HIQDKPALFRSFYKWLKPGGKVLISDYCKSAGTPSSEFAEYIKQRGYDLHDVKAYGQMLK 420
Query: 421 DAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
DAGF D+IAEDRT+QF QVL+RELD IEK+KD FI DFSE
Sbjct: 421 DAGFDDVIAEDRTDQFNQVLKRELDVIEKEKDEFIHDFSE 460
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684743|ref|NP_188427.2| phosphoethanolamine N-methyltransferase 1 [Arabidopsis thaliana] gi|24212081|sp|Q9FR44.1|PEAM1_ARATH RecName: Full=Phosphoethanolamine N-methyltransferase 1; Short=AtNMT1; Short=PEAMT 1 gi|11890406|gb|AAG41121.1|AF197940_1 SAM:phospho-ethanolamine N-methyltransferase [Arabidopsis thaliana] gi|13605801|gb|AAK32886.1|AF367299_1 AT3g18000/MEB5_22 [Arabidopsis thaliana] gi|16648797|gb|AAL25589.1| AT3g18000/MEB5_22 [Arabidopsis thaliana] gi|20147131|gb|AAM10282.1| AT3g18000/MEB5_22 [Arabidopsis thaliana] gi|332642512|gb|AEE76033.1| phosphoethanolamine N-methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/452 (84%), Positives = 426/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLPPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFID+VIKKNE +NGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDNVIKKNESINGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSKVF+
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDNVQYK
Sbjct: 188 ECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYMA+KFDVH
Sbjct: 248 SSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYMAEKFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGL CSVEFEVADCT K YP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLSCSVEFEVADCTTKHYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKDAGFTDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AEDRTDQFMQVLKRELDRVEKEKEKFISDFSK 459
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456147|ref|XP_002282182.1| PREDICTED: phosphoethanolamine N-methyltransferase [Vitis vinifera] gi|297734321|emb|CBI15568.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/452 (84%), Positives = 425/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
EREIQKNYW EHSA+LTVEAMMLDSKA+DLDKEERPEVLSLLPP+EGK+VLE GAGIGRF
Sbjct: 8 EREIQKNYWAEHSADLTVEAMMLDSKAADLDKEERPEVLSLLPPFEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG VI+LDFI+SVIKKNE +NGH++NVKFMCADV SP+L FS +SVD++FSNW
Sbjct: 68 TGELAQKAGQVISLDFIESVIKKNESINGHYKNVKFMCADVASPELNFSAESVDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE+L ERMVKWLKVGG+IFFRESCFHQSGDSKRK NPTHYREPRFY+KVFK
Sbjct: 128 LLMYLSDKEVEELVERMVKWLKVGGFIFFRESCFHQSGDSKRKVNPTHYREPRFYTKVFK 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ D SGN +ELSLVG KCIGAYV+NKKNQNQICW+WQKV SQ+D+GFQ+FLDNVQYK
Sbjct: 188 ECQTHDCSGNLYELSLVGCKCIGAYVRNKKNQNQICWLWQKVSSQDDKGFQKFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
NGILRYERVFG GFVSTGGIETTKEFV KLDLKPGQKVLDVGCGIGGGDFYMA+ FDV
Sbjct: 248 CNGILRYERVFGEGFVSTGGIETTKEFVGKLDLKPGQKVLDVGCGIGGGDFYMAENFDVE 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLSINM+SFALERAIGLKCSVEFEVADCTKK+YP+N+FDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSINMVSFALERAIGLKCSVEFEVADCTKKSYPDNTFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
FKSFFKWLKPGG VLISDYCK G PS EFSEYIKQRGYDLHDV++YG+ML+DAGF+++I
Sbjct: 368 FKSFFKWLKPGGKVLISDYCKRAGPPSSEFSEYIKQRGYDLHDVEAYGEMLRDAGFIEVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVLQREL+A+E +K+ F++DFSE
Sbjct: 428 AEDRTDQFLQVLQRELNAVETNKNEFVQDFSE 459
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830436|ref|XP_002883100.1| N-methyltransferase 1 [Arabidopsis lyrata subsp. lyrata] gi|297328940|gb|EFH59359.1| N-methyltransferase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/452 (84%), Positives = 425/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLP YEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPSYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFIDSVIKKNE VNGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDSVIKKNESVNGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSKVF+
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDNVQYK
Sbjct: 188 ECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYMA+KFDVH
Sbjct: 248 SSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYMAEKFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGL CSVEFEVADCT K YP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLNCSVEFEVADCTTKHYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKDAGFTDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AEDRTDQFMQVLKRELDRVEKEKEEFISDFSK 459
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|20260388|gb|AAM13092.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/452 (84%), Positives = 425/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLPPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFID+VIKKNE +NGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDNVIKKNESINGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSKVF+
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDNVQYK
Sbjct: 188 ECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYMA+KFDVH
Sbjct: 248 SSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYMAEKFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGL CSV FEVADCT K YP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLSCSVGFEVADCTTKHYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKDAGFTDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AEDRTDQFMQVLKRELDRVEKEKEKFISDFSK 459
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|353529380|gb|AER10512.1| phosphoethanolamine N-methyltransferase [Pyrus betulifolia] gi|353529382|gb|AER10513.1| phosphoethanolamine N-methyltransferase [Pyrus betulifolia] | Back alignment and taxonomy information |
|---|
Score = 813 bits (2101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/460 (82%), Positives = 425/460 (92%)
Query: 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLE 60
M +N ERE+QKNYW+EHSA+LTVEAMMLDS ASDLDKEERPEVLS+LPPYEG++V+E
Sbjct: 1 MAASANGEEREVQKNYWVEHSADLTVEAMMLDSNASDLDKEERPEVLSMLPPYEGQSVVE 60
Query: 61 FGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120
GAGIGRFTGELA+KAG ++ALDFIDSVIKKNE +NGH +NVKFMCADV SPDL SE S
Sbjct: 61 LGAGIGRFTGELAEKAGQLVALDFIDSVIKKNESINGHHKNVKFMCADVASPDLKISEGS 120
Query: 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180
VD++FSNWLLMYLSDKEVEKL ERM+ WLKVGGYIFFRESCFHQSGDSK+K NPTHYREP
Sbjct: 121 VDLIFSNWLLMYLSDKEVEKLVERMMGWLKVGGYIFFRESCFHQSGDSKQKSNPTHYREP 180
Query: 181 RFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQ 240
RFY+KVFKEC++ D SGN FELSLV KCIGAYV+NKKNQNQICW+WQKV S+NDRGFQQ
Sbjct: 181 RFYTKVFKECRMPDDSGNFFELSLVSCKCIGAYVRNKKNQNQICWLWQKVPSENDRGFQQ 240
Query: 241 FLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY 300
FLDNVQYK NGILRYERVFG+GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY
Sbjct: 241 FLDNVQYKNNGILRYERVFGLGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFY 300
Query: 301 MADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360
MA FDV V+GIDLS+NMISFALE++IGLKC+VEFEVADCTKKTYP+NSFDVIYSRDTIL
Sbjct: 301 MASNFDVEVIGIDLSVNMISFALEQSIGLKCAVEFEVADCTKKTYPDNSFDVIYSRDTIL 360
Query: 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420
HIQDKPALF+SF++WLKPGG VLISDYC+ GTPS F+EYIKQRGYDLHDVK+YGQMLK
Sbjct: 361 HIQDKPALFRSFYEWLKPGGKVLISDYCRCAGTPSENFAEYIKQRGYDLHDVKAYGQMLK 420
Query: 421 DAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
DAGF ++IAEDRT+QF VL+RELDAIEKDKD+F++DFS+
Sbjct: 421 DAGFYEVIAEDRTDQFKAVLERELDAIEKDKDSFVQDFSQ 460
|
Source: Pyrus betulifolia Species: Pyrus betulifolia Genus: Pyrus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9294501|dbj|BAB02720.1| methyl transferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/459 (83%), Positives = 426/459 (92%), Gaps = 7/459 (1%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLPPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFID+VIKKNE +NGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDNVIKKNESINGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK--- 185
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSK
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKIDG 187
Query: 186 ----VFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQF 241
VF+ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+F
Sbjct: 188 ETMKVFQECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRF 247
Query: 242 LDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYM 301
LDNVQYK +GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYM
Sbjct: 248 LDNVQYKSSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYM 307
Query: 302 ADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361
A+KFDVHVVGIDLS+NMISFALERAIGL CSVEFEVADCT K YP+NSFDVIYSRDTILH
Sbjct: 308 AEKFDVHVVGIDLSVNMISFALERAIGLSCSVEFEVADCTTKHYPDNSFDVIYSRDTILH 367
Query: 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421
IQDKPALF++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKD
Sbjct: 368 IQDKPALFRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKD 427
Query: 422 AGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AGF D+IAEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AGFTDVIAEDRTDQFMQVLKRELDRVEKEKEKFISDFSK 466
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|32478660|gb|AAP83582.1| phosphoethanolamine N-methyltransferase [Brassica napus] | Back alignment and taxonomy information |
|---|
Score = 810 bits (2091), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/456 (83%), Positives = 422/456 (92%)
Query: 5 SNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAG 64
S ER++QKNYW+EHSA+LTVEAMMLDS+A+DLDKEERPEVLSLLPPYEGK+VLE GAG
Sbjct: 4 SYEAERDVQKNYWIEHSADLTVEAMMLDSRAADLDKEERPEVLSLLPPYEGKSVLELGAG 63
Query: 65 IGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124
IGRFTGELA+KAG +IALDFIDSVIKKNE VNGH++NVKFMCADVTSPDL ++ S+D++
Sbjct: 64 IGRFTGELAQKAGELIALDFIDSVIKKNESVNGHYKNVKFMCADVTSPDLNITDGSIDLI 123
Query: 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYS 184
FSNWLLMYLSDKEVE L ERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFY+
Sbjct: 124 FSNWLLMYLSDKEVELLVERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYT 183
Query: 185 KVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDN 244
KVF+EC +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDN
Sbjct: 184 KVFQECVTRDAAGNSFELSMIGQKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDN 243
Query: 245 VQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK 304
VQYK +GILRYERVFG GFVSTGGIETTKEFV K+DLKPGQKVLDVGCGIGGGDFYMA+
Sbjct: 244 VQYKSSGILRYERVFGQGFVSTGGIETTKEFVEKMDLKPGQKVLDVGCGIGGGDFYMAEN 303
Query: 305 FDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQD 364
FDVHVVGIDLS+NMISFALERAIGL CSVEFEVADCT K YPENS DVIYSRDTILHIQD
Sbjct: 304 FDVHVVGIDLSVNMISFALERAIGLNCSVEFEVADCTTKHYPENSXDVIYSRDTILHIQD 363
Query: 365 KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424
KPALF++FFKWLKPGG VLISDYCKS TPS EFSEYIKQRGYDLHDV++YGQMLK AGF
Sbjct: 364 KPALFRTFFKWLKPGGKVLISDYCKSSETPSPEFSEYIKQRGYDLHDVQAYGQMLKXAGF 423
Query: 425 VDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
D+IA+DRT+QF+QVL+REL+ +EK+K+ FI DFS+
Sbjct: 424 NDVIADDRTDQFMQVLRRELERVEKEKEEFISDFSK 459
|
Source: Brassica napus Species: Brassica napus Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147765575|emb|CAN64744.1| hypothetical protein VITISV_041321 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/452 (83%), Positives = 423/452 (93%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
EREIQKNYW EHSA+LTVEAMMLDSKA+DLDKEERPEVLSLLPP+EGK+VLE GAGIGRF
Sbjct: 7 EREIQKNYWAEHSADLTVEAMMLDSKAADLDKEERPEVLSLLPPFEGKSVLELGAGIGRF 66
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
T ELA+KAG VI+LDFI+SVIKKNE +NGH++NVKFMCADV SP+L FS +SVD++FSNW
Sbjct: 67 TXELAQKAGQVISLDFIESVIKKNESINGHYKNVKFMCADVASPELNFSAESVDLIFSNW 126
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE+L ERMVKWLKVGG+IFFRESCFHQSGDSKRK NPTHYREPRFY+KVFK
Sbjct: 127 LLMYLSDKEVEELVERMVKWLKVGGFIFFRESCFHQSGDSKRKVNPTHYREPRFYTKVFK 186
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ D SGN +ELSLVG KCIGAYV+NKKNQNQICW+WQKV SQ+D+GFQ+FLDNVQYK
Sbjct: 187 ECQTHDCSGNLYELSLVGCKCIGAYVRNKKNQNQICWLWQKVSSQDDKGFQKFLDNVQYK 246
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
NGILRYERVFG GFVSTGGIETTKEFV KLDLKPG+KVLDVGCGIGGGDFYMA+ FDV
Sbjct: 247 CNGILRYERVFGEGFVSTGGIETTKEFVGKLDLKPGRKVLDVGCGIGGGDFYMAENFDVE 306
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLSINM+SFALERAIGLKCSVEFEVADCTKK+YP+N+FDVIYSRDTILHIQDKPAL
Sbjct: 307 VVGIDLSINMVSFALERAIGLKCSVEFEVADCTKKSYPDNTFDVIYSRDTILHIQDKPAL 366
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
FKSFFKWLKPGG VLISDYCK G PS EFSEYIKQRGYDLHBV++YG+ML+DAGF+++I
Sbjct: 367 FKSFFKWLKPGGKVLISDYCKRAGPPSSEFSEYIKQRGYDLHBVEAYGEMLRDAGFIEVI 426
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL REL+A+E +K+ F++DFSE
Sbjct: 427 AEDRTDQFLQVLXRELNAVETNKNEFVQDFSE 458
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297847128|ref|XP_002891445.1| hypothetical protein ARALYDRAFT_473996 [Arabidopsis lyrata subsp. lyrata] gi|297337287|gb|EFH67704.1| hypothetical protein ARALYDRAFT_473996 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/452 (82%), Positives = 423/452 (93%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQK+YWMEHS++LTVEAMMLDSKASDLDKEERPEVLSL+PPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKSYWMEHSSDLTVEAMMLDSKASDLDKEERPEVLSLIPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG VIALDFI+S IKKNE VNGH++N+KFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGEVIALDFIESAIKKNESVNGHYKNIKFMCADVTSPDLKIADGSIDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE +AERM+ W+K GGYIFFRESCFHQSGDSKRK NPTHYREPRFY+KVFK
Sbjct: 128 LLMYLSDKEVELMAERMIGWIKPGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYTKVFK 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DASGNS+ELS+VG KCIGAYVKNKKNQNQICWIWQKV +ND+ FQ+FLDNVQYK
Sbjct: 188 ECQTRDASGNSYELSMVGCKCIGAYVKNKKNQNQICWIWQKVSLENDKDFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG G+VSTGG ETTKEFVAK+DLKPGQKVLDVGCGIGGGDFYMA+ FDVH
Sbjct: 248 SSGILRYERVFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDFYMAENFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGLKCSVEFEVADCT KTYP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLKCSVEFEVADCTTKTYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLI+DYC+S TPS +F+EYI+QRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRAFFKWLKPGGKVLITDYCRSAETPSPDFAEYIEQRGYDLHDVQAYGQMLKDAGFEDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QFV+VL+RELD +EK+K+ FI DFSE
Sbjct: 428 AEDRTDQFVRVLRRELDKVEKEKEEFISDFSE 459
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| TAIR|locus:2088535 | 491 | XPL1 "AT3G18000" [Arabidopsis | 0.931 | 0.920 | 0.845 | 1.7e-215 | |
| TAIR|locus:2198035 | 491 | PMEAMT "AT1G48600" [Arabidopsi | 0.931 | 0.920 | 0.831 | 1.3e-212 | |
| ZFIN|ZDB-GENE-060929-740 | 489 | pmt "phosphoethanolamine methy | 0.913 | 0.905 | 0.541 | 1.5e-129 | |
| GENEDB_PFALCIPARUM|MAL13P1.214 | 266 | MAL13P1.214 "phosphoethanolami | 0.482 | 0.879 | 0.401 | 1.2e-44 | |
| UNIPROTKB|Q8IDQ9 | 266 | PfPMT "Phosphoethanolamine N-m | 0.482 | 0.879 | 0.401 | 1.2e-44 | |
| WB|WBGene00018811 | 437 | pmt-2 [Caenorhabditis elegans | 0.672 | 0.745 | 0.342 | 2.4e-44 | |
| WB|WBGene00022781 | 484 | pmt-1 [Caenorhabditis elegans | 0.449 | 0.450 | 0.365 | 6.3e-37 | |
| UNIPROTKB|Q5LR84 | 407 | SPO2245 "Conserved domain prot | 0.255 | 0.304 | 0.373 | 1.1e-13 | |
| TIGR_CMR|SPO_2245 | 407 | SPO_2245 "conserved domain pro | 0.255 | 0.304 | 0.373 | 1.1e-13 | |
| DICTYBASE|DDB_G0275359 | 462 | DDB_G0275359 [Dictyostelium di | 0.307 | 0.322 | 0.326 | 9.6e-13 |
| TAIR|locus:2088535 XPL1 "AT3G18000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2082 (738.0 bits), Expect = 1.7e-215, P = 1.7e-215
Identities = 382/452 (84%), Positives = 426/452 (94%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQKNYW+EHSA+LTVEAMMLDS+ASDLDKEERPEVLSLLPPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKNYWIEHSADLTVEAMMLDSRASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG +IALDFID+VIKKNE +NGH++NVKFMCADVTSPDL ++ S+D++FSNW
Sbjct: 68 TGELAQKAGELIALDFIDNVIKKNESINGHYKNVKFMCADVTSPDLKITDGSLDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE LAERMV W+KVGGYIFFRESCFHQSGDSKRK NPTHYREPRFYSKVF+
Sbjct: 128 LLMYLSDKEVELLAERMVGWIKVGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYSKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DA+GNSFELS++G KCIGAYVKNKKNQNQICWIWQKV S+NDRGFQ+FLDNVQYK
Sbjct: 188 ECQTRDAAGNSFELSMIGCKCIGAYVKNKKNQNQICWIWQKVSSENDRGFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG GFVSTGG+ETTKEFV K++LKPGQKVLDVGCGIGGGDFYMA+KFDVH
Sbjct: 248 SSGILRYERVFGQGFVSTGGLETTKEFVEKMNLKPGQKVLDVGCGIGGGDFYMAEKFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGL CSVEFEVADCT K YP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLSCSVEFEVADCTTKHYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLISDYC+S TPS EFSEYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLISDYCRSPKTPSAEFSEYIKQRGYDLHDVQAYGQMLKDAGFTDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QF+QVL+RELD +EK+K+ FI DFS+
Sbjct: 428 AEDRTDQFMQVLKRELDRVEKEKEKFISDFSK 459
|
|
| TAIR|locus:2198035 PMEAMT "AT1G48600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2055 (728.5 bits), Expect = 1.3e-212, P = 1.3e-212
Identities = 376/452 (83%), Positives = 422/452 (93%)
Query: 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRF 68
ER+IQK+YWMEHS++LTVEAMMLDSKASDLDKEERPEVLSL+PPYEGK+VLE GAGIGRF
Sbjct: 8 ERDIQKSYWMEHSSDLTVEAMMLDSKASDLDKEERPEVLSLIPPYEGKSVLELGAGIGRF 67
Query: 69 TGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128
TGELA+KAG VIALDFI+S I+KNE VNGH++N+KFMCADVTSPDL + S+D++FSNW
Sbjct: 68 TGELAQKAGEVIALDFIESAIQKNESVNGHYKNIKFMCADVTSPDLKIKDGSIDLIFSNW 127
Query: 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188
LLMYLSDKEVE +AERM+ W+K GGYIFFRESCFHQSGDSKRK NPTHYREPRFY+KVF+
Sbjct: 128 LLMYLSDKEVELMAERMIGWVKPGGYIFFRESCFHQSGDSKRKSNPTHYREPRFYTKVFQ 187
Query: 189 ECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYK 248
ECQ +DASGNSFELS+VG KCIGAYVKNKKNQNQICWIWQKV +ND+ FQ+FLDNVQYK
Sbjct: 188 ECQTRDASGNSFELSMVGCKCIGAYVKNKKNQNQICWIWQKVSVENDKDFQRFLDNVQYK 247
Query: 249 LNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308
+GILRYERVFG G+VSTGG ETTKEFVAK+DLKPGQKVLDVGCGIGGGDFYMA+ FDVH
Sbjct: 248 SSGILRYERVFGEGYVSTGGFETTKEFVAKMDLKPGQKVLDVGCGIGGGDFYMAENFDVH 307
Query: 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPAL 368
VVGIDLS+NMISFALERAIGLKCSVEFEVADCT KTYP+NSFDVIYSRDTILHIQDKPAL
Sbjct: 308 VVGIDLSVNMISFALERAIGLKCSVEFEVADCTTKTYPDNSFDVIYSRDTILHIQDKPAL 367
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428
F++FFKWLKPGG VLI+DYC+S TPS EF+EYIKQRGYDLHDV++YGQMLKDAGF D+I
Sbjct: 368 FRTFFKWLKPGGKVLITDYCRSAETPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVI 427
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
AEDRT+QFVQVL+REL+ +EK+K+ FI DFSE
Sbjct: 428 AEDRTDQFVQVLRRELEKVEKEKEEFISDFSE 459
|
|
| ZFIN|ZDB-GENE-060929-740 pmt "phosphoethanolamine methyltransferase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1271 (452.5 bits), Expect = 1.5e-129, P = 1.5e-129
Identities = 247/456 (54%), Positives = 320/456 (70%)
Query: 16 YWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK 75
+W EHS TVE MMLDS A +L + E PE+L LLP VLE GAGIGR+T L +
Sbjct: 4 FWKEHSKQATVEEMMLDSHAQELTQHELPEILDLLPALSESCVLELGAGIGRYTKHLIGR 63
Query: 76 AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD 135
A HV A+DF++ ++KN + NGH +V+F+ ADVT D F E S D++FSNWLLMYLSD
Sbjct: 64 ARHVTAVDFMEKFVEKNRQDNGHLGSVEFIQADVTKLD--FPEHSFDLVFSNWLLMYLSD 121
Query: 136 KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195
+E++ LAE+ ++WL+ GG++FFRESCFHQSGD KR NPTHYR P Y+ + + +
Sbjct: 122 QELQLLAEKFLRWLRPGGFLFFRESCFHQSGDCKRDFNPTHYRSPAEYNHLMTSVLLDQS 181
Query: 196 SGNS---FELSLVGYKCIGAYVKNKKNQNQICWIWQKVR----SQNDRGF---QQFLDNV 245
+ +V K + YVK KKNQNQ+CW+ QK R Q GF +QFLDN
Sbjct: 182 DATEKRHYGFEIVLNKTVQTYVKMKKNQNQLCWLLQKARRDVSEQYQAGFSTFRQFLDNQ 241
Query: 246 QYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF 305
QY GILRYE++FG GFVSTGG++TTKEFV L+L GQKVLDVGCGIGGGDFYMA F
Sbjct: 242 QYTRRGILRYEKMFGCGFVSTGGLQTTKEFVDMLNLSAGQKVLDVGCGIGGGDFYMAKTF 301
Query: 306 DVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTKKTYPENSFDVIYSRDTILHIQD 364
V V+G+DLS NM+ A+ERA+ K V+FEV+D TK+ +P+ +FDV+YSRDTILHI+D
Sbjct: 302 GVEVLGMDLSSNMVEIAMERAVKEKLPLVQFEVSDATKRRFPDAAFDVVYSRDTILHIRD 361
Query: 365 KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424
K LF +F+ W+KPGG +LISDYC S F +Y+KQRGY L+ + YGQ L++ GF
Sbjct: 362 KLHLFTNFYSWMKPGGKLLISDYCCGEKPWSPAFQDYVKQRGYILYTPQRYGQFLREVGF 421
Query: 425 VDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
++ AEDRTEQF+QV++ EL E+ KD FI++FS+
Sbjct: 422 SNVRAEDRTEQFIQVIKSELQRAEEMKDEFIQEFSK 457
|
|
| GENEDB_PFALCIPARUM|MAL13P1.214 MAL13P1.214 "phosphoethanolamine N-methyltransferase, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 96/239 (40%), Positives = 149/239 (62%)
Query: 233 QNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGC 292
+N + FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G
Sbjct: 5 ENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGS 64
Query: 293 GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352
G+GGG Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+
Sbjct: 65 GLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN-KIIFEANDILTKEFPENNFDL 123
Query: 353 IYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDL 409
IYSRD ILH+ ++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L
Sbjct: 124 IYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
Query: 410 HDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLD 468
V+ Y +L F +++++D ++ + Q+L+ E + ++K+ F+K FSE F LD
Sbjct: 184 ITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSEKK-FISLD 241
|
|
| UNIPROTKB|Q8IDQ9 PfPMT "Phosphoethanolamine N-methyltransferase" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 96/239 (40%), Positives = 149/239 (62%)
Query: 233 QNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGC 292
+N + FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G
Sbjct: 5 ENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGS 64
Query: 293 GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352
G+GGG Y+ +K+ H GID+ N+++ A ER G + FE D K +PEN+FD+
Sbjct: 65 GLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNN-KIIFEANDILTKEFPENNFDL 123
Query: 353 IYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDL 409
IYSRD ILH+ ++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L
Sbjct: 124 IYSRDAILHLSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
Query: 410 HDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLD 468
V+ Y +L F +++++D ++ + Q+L+ E + ++K+ F+K FSE F LD
Sbjct: 184 ITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSEKK-FISLD 241
|
|
| WB|WBGene00018811 pmt-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 119/347 (34%), Positives = 182/347 (52%)
Query: 123 MMFSNWLLMYLSDKEV-EKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPR 181
++F+N L +++ ++ + +GG + RE D ++ T Y +
Sbjct: 68 LIFNNALSQIITNADLLTDFLKNATNATAIGGTVIIRED-LKDCSDKRQVARLTDYFD-- 124
Query: 182 FYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIW---QKVRSQNDRG- 237
VF+ D+ GN+ L L Y N QN + +I+ +KV +
Sbjct: 125 ----VFRTT---DSDGNNTGLDL--YTVDQVEHSNYVEQNFLDFIFVFRKKVFAPTTDAT 175
Query: 238 --FQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKL-DLKPGQKVLDVGCGI 294
F+ FLD QY GI YE +FGV F+S GG + + + + D KPGQ +LD+G GI
Sbjct: 176 ITFRDFLDKTQYTNTGIDAYEWMFGVNFISPGGYDENLKIIKRFGDFKPGQTMLDIGVGI 235
Query: 295 GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTKKTYPENSFDVI 353
GGG +AD+F VHV GIDLS NM++ ALER K S V++ + D + +NSFD +
Sbjct: 236 GGGARQVADEFGVHVHGIDLSSNMLAIALERLHEEKDSRVKYSITDALVYQFEDNSFDYV 295
Query: 354 YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVK 413
+SRD I HI D LF +K LKPGG VLI+ Y K +G S +F Y+ QR Y L ++K
Sbjct: 296 FSRDCIQHIPDTEKLFSRIYKALKPGGKVLITMYGKGYGEQSDKFKTYVAQRAYFLKNLK 355
Query: 414 SYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
+ GFV++ E+ T +F ++L E +E+++ F+ F++
Sbjct: 356 EIADIANKTGFVNVQTENMTPRFKEILLEERGHLEQNEAEFMSKFTQ 402
|
|
| WB|WBGene00022781 pmt-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 84/230 (36%), Positives = 130/230 (56%)
Query: 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELA 73
K++W ++S +MML+ A +L+ +R ++L+ LP K V++ GAGIGRFT LA
Sbjct: 34 KSFWDKYSDKPDTNSMMLNHSAEELESSDRADILASLPLLHNKDVVDIGAGIGRFTTVLA 93
Query: 74 KKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133
+ A V++ DFIDS IKKN+E N H N+ + D L +SVD++F+NWL+MYL
Sbjct: 94 ETARWVLSTDFIDSFIKKNQERNAHLGNINYQVGDAVG--LKMESNSVDLVFTNWLMMYL 151
Query: 134 SDKEVEKLAERMVKWLKVGGYIFFRESCFHQS-GDSKRK--H-----NPTHYREPRFYSK 185
SD+E + ++WL+ G + RESC S G SK K H NPTHYR Y
Sbjct: 152 SDEETVEFIFNCMRWLRSHGIVHLRESCSEPSTGRSKAKSMHDTANANPTHYRFSSLYIN 211
Query: 186 VFKECQIQDASGNSFELSLVGYKC-IGAYVKNKKNQNQICWIWQKVRSQN 234
+ + + +D + + V + C + Y+K N Q+ W+ +KV +++
Sbjct: 212 LLRAIRYRDVDNKLWRFN-VQWSCSVPTYIKRSNNWRQVHWLAEKVPAED 260
|
|
| UNIPROTKB|Q5LR84 SPO2245 "Conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 47/126 (37%), Positives = 63/126 (50%)
Query: 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF--ALE 324
GG T F ++DL K LD+GCG+GG Y A F + GIDL+ + AL
Sbjct: 179 GGRAATVHFFDQIDLSETSKALDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALC 238
Query: 325 RAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ +GL V VA + FD+ Y ++I+DK ALFK + LKPGGT I
Sbjct: 239 QWVGLSDKVNLSVASALSMPFESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
Query: 385 SDYCKS 390
D +S
Sbjct: 299 YDIMRS 304
|
|
| TIGR_CMR|SPO_2245 SPO_2245 "conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 205 (77.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 47/126 (37%), Positives = 63/126 (50%)
Query: 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF--ALE 324
GG T F ++DL K LD+GCG+GG Y A F + GIDL+ + AL
Sbjct: 179 GGRAATVHFFDQIDLSETSKALDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALC 238
Query: 325 RAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ +GL V VA + FD+ Y ++I+DK ALFK + LKPGGT I
Sbjct: 239 QWVGLSDKVNLSVASALSMPFESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
Query: 385 SDYCKS 390
D +S
Sbjct: 299 YDIMRS 304
|
|
| DICTYBASE|DDB_G0275359 DDB_G0275359 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 51/156 (32%), Positives = 80/156 (51%)
Query: 287 VLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVEFEVADCTKKT 344
VLDVGCG+GG + + G++++ + A +RA +G+ F+ D K
Sbjct: 243 VLDVGCGVGGPTLEICQYTGCKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDAMKMP 302
Query: 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY--C-KSFGTPSVEFSEY 401
YP+N+FDV+ ++ H+ DK A K ++ LKPGG + S++ C K V+F E
Sbjct: 303 YPDNTFDVVTFFESTCHMPDKQAFIKECYRVLKPGGRMSGSEWLQCEKPTEKDIVQFIEP 362
Query: 402 IKQRGYDLH--DVKSYGQMLKDAGFVDIIAEDRTEQ 435
I H + SY M++ AGF IA D T++
Sbjct: 363 ICAHHSVPHMGSLMSYRSMMESAGFYVHIAMDLTQE 398
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FR44 | PEAM1_ARATH | 2, ., 1, ., 1, ., 1, 0, 3 | 0.8451 | 0.9319 | 0.9205 | yes | no |
| Q9C6B9 | PEAM3_ARATH | 2, ., 1, ., 1, ., 1, 0, 3 | 0.7876 | 0.9319 | 0.9224 | no | no |
| Q9M571 | PEAMT_SPIOL | 2, ., 1, ., 1, ., 1, 0, 3 | 0.8119 | 0.9319 | 0.9149 | N/A | no |
| Q944H0 | PEAM2_ARATH | 2, ., 1, ., 1, ., 1, 0, 3 | 0.8329 | 0.9134 | 0.9326 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.983 |
| 3rd Layer | 2.1.1.103 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 485 | |||
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 0.0 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 3e-59 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 1e-23 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-22 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 2e-21 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 3e-20 | |
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 9e-20 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-18 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-16 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 7e-16 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 7e-16 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 3e-15 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 9e-15 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 3e-14 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 4e-14 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 6e-14 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 9e-14 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 3e-13 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 8e-13 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-12 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-11 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 2e-10 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-10 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 5e-10 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 3e-09 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 3e-09 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-09 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 5e-08 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-07 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 4e-07 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 4e-07 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 1e-06 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-06 | |
| TIGR04345 | 242 | TIGR04345, ovoA_Cterm, putative 4-mercaptohistidin | 3e-06 | |
| PRK01683 | 258 | PRK01683, PRK01683, trans-aconitate 2-methyltransf | 3e-06 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 4e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 5e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 5e-06 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 8e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 9e-06 | |
| PRK14103 | 255 | PRK14103, PRK14103, trans-aconitate 2-methyltransf | 1e-05 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 3e-05 | |
| COG2519 | 256 | COG2519, GCD14, tRNA(1-methyladenosine) methyltran | 3e-05 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 3e-05 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 5e-05 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 5e-05 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 7e-05 | |
| PRK06202 | 232 | PRK06202, PRK06202, hypothetical protein; Provisio | 7e-05 | |
| COG4976 | 287 | COG4976, COG4976, Predicted methyltransferase (con | 8e-05 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 2e-04 | |
| COG2518 | 209 | COG2518, Pcm, Protein-L-isoaspartate carboxylmethy | 3e-04 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 5e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 6e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 7e-04 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 7e-04 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 9e-04 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 9e-04 | |
| PRK13942 | 212 | PRK13942, PRK13942, protein-L-isoaspartate O-methy | 9e-04 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 0.001 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 0.001 | |
| smart00650 | 169 | smart00650, rADc, Ribosomal RNA adenine dimethylas | 0.001 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 0.001 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.001 | |
| pfam01135 | 210 | pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat | 0.002 | |
| PRK14896 | 258 | PRK14896, ksgA, 16S ribosomal RNA methyltransferas | 0.002 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 0.002 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 0.003 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.004 | |
| COG2242 | 187 | COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme | 0.004 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 0.004 | |
| smart00138 | 264 | smart00138, MeTrc, Methyltransferase, chemotaxis p | 0.004 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 0.004 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 939 bits (2429), Expect = 0.0
Identities = 385/443 (86%), Positives = 416/443 (93%)
Query: 18 MEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG 77
EHS +LTVEAMMLDSKASDLDKEERPE+LSLLPPYEGK+VLE GAGIGRFTGELAKKAG
Sbjct: 1 KEHSVDLTVEAMMLDSKASDLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG 60
Query: 78 HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE 137
VIALDFI+SVIKKNE +NGH++NVKFMCADVTSPDL S+ SVD++FSNWLLMYLSDKE
Sbjct: 61 QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKE 120
Query: 138 VEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197
VE LAERMVKWLKVGGYIFFRESCFHQSGDSKRK+NPTHYREPRFY+KVFKEC +D G
Sbjct: 121 VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHTRDEDG 180
Query: 198 NSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYER 257
NSFELSLVG KCIGAYVKNKKNQNQICW+WQKV S ND+GFQ+FLDNVQYK +GILRYER
Sbjct: 181 NSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYER 240
Query: 258 VFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
VFG GFVSTGG+ETTKEFV KLDLKPGQKVLDVGCGIGGGDFYMA+ FDVHVVGIDLS+N
Sbjct: 241 VFGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN 300
Query: 318 MISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLK 377
MISFALERAIG KCSVEFEVADCTKKTYP+NSFDVIYSRDTILHIQDKPALF+SFFKWLK
Sbjct: 301 MISFALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLK 360
Query: 378 PGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
PGG VLISDYC+S GTPS EF+EYIKQRGYDLHDV++YGQMLKDAGF D+IAEDRT+QF+
Sbjct: 361 PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFL 420
Query: 438 QVLQRELDAIEKDKDAFIKDFSE 460
QVLQRELDA+EK+KD FI DFSE
Sbjct: 421 QVLQRELDAVEKEKDEFISDFSE 443
|
Length = 475 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 3e-59
Identities = 94/224 (41%), Positives = 143/224 (63%), Gaps = 4/224 (1%)
Query: 240 QFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDF 299
+L+N QY GI YE +FG ++S+GGIE T + ++ ++L KVLD+G G+GGG
Sbjct: 9 TYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCK 68
Query: 300 YMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359
Y+ +K+ HV G+D+ M++ A R K +EFE D KK +PEN+FD+IYSRD I
Sbjct: 69 YINEKYGAHVHGVDICEKMVNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAI 127
Query: 360 LHI--QDKPALFKSFFKWLKPGGTVLISDYCKS-FGTPSVEFSEYIKQRGYDLHDVKSYG 416
LH+ DK LF+ +KWLKP G +LI+DYC EF YIK+R Y L ++ YG
Sbjct: 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYG 187
Query: 417 QMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
++K F +++A+D ++ ++++LQ EL +E+ K+ F+K +SE
Sbjct: 188 DLIKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKLYSE 231
|
Length = 263 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 60/198 (30%), Positives = 92/198 (46%), Gaps = 19/198 (9%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVE 334
KL LKPG +LD+GCG GG Y A+++ V VVG+ LS +++A +R A GL+ +VE
Sbjct: 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVE 125
Query: 335 FEVADCTKKTYP--ENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVL---ISDY 387
+ D Y E FD I S H+ + FK + LKPGG +L I+
Sbjct: 126 VRLQD-----YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180
Query: 388 CKSFGTPSVEFSEYIKQRGY--DLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELD 445
+ F +YI G + ++ +AGFV + E + + L+ +
Sbjct: 181 DQEFRRFPDFIDKYIFPGGELPSISEILELAS---EAGFVVLDVESLRPHYARTLRLWRE 237
Query: 446 AIEKDKDAFIKDFSEVFC 463
E ++D I + E F
Sbjct: 238 RFEANRDEAIALYDERFY 255
|
Length = 283 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 1e-22
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE 347
LDVGCG G +A + V G+DLS M++ A +RA +F V D +P+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRA-----PRKFVVGDAEDLPFPD 55
Query: 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
SFDV+ S + H+ D + + LKPGG ++I
Sbjct: 56 ESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-21
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 268 GIETTKEFV-AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALE 324
+ L ++PG +VLDVGCG G +A + + VVGID S M++ A E
Sbjct: 3 DFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE 62
Query: 325 RAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
RA GL +VEF D +P+ SFD + S + H++D + L+PGG V++
Sbjct: 63 RAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVV 122
Query: 385 SD 386
D
Sbjct: 123 LD 124
|
Length = 241 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 3e-20
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 25/186 (13%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC 331
+ ++ L +KPG KVLDV CG G +A VVG+D+S +M+ A E+
Sbjct: 41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 332 S-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK- 389
VEF V D +P+NSFD + + ++ D K ++ LKPGG +L+ ++ K
Sbjct: 101 QNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160
Query: 390 ----------------------SFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427
E EY+ + D + QM++ AGF ++
Sbjct: 161 DNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEV 220
Query: 428 IAEDRT 433
E+ T
Sbjct: 221 RYENLT 226
|
Length = 238 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 9e-20
Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 269 IETTKEF--VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA--LE 324
IE + + V D K ++++DVGCGIGG Y+A K+ +V GI LS + A L
Sbjct: 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALA 161
Query: 325 RAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
A GL V F+VAD + + + FD+++S ++ H+ DK + + PGG ++I
Sbjct: 162 AAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIII 221
Query: 385 SDYCKSFGTPSVEFSEYIKQ-------RGYDLHD---VKSYGQMLKDAGFVDIIAEDRTE 434
+C P + +Q Y L Y ++ + G DI ED +E
Sbjct: 222 VTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE 281
Query: 435 Q 435
Sbjct: 282 H 282
|
Length = 340 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 1e-18
Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 8/115 (6%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADK--FDVHVVGIDLSINMISFALERA--IGLKCSVEFE 336
LK G KVLD+GCG G F +A+K VVGID+S I A E A +G + +VEF
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFI 59
Query: 337 VADCTK---KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
D + +NSFDV+ S + + H+ D + + + LKPGG +++SD
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPV 114
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-16
Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 22/160 (13%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDF--YMADKFDVHVVGIDLSINMISFALERA 326
+ +L KPG +VLD+GCG G + ++ V G+D S +
Sbjct: 10 ARLLARLLPRL--KPGGRVLDIGCG--TGILLRLLRERG-FDVTGVDPSPAAV------- 57
Query: 327 IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
+ F + D +D+I + + + H+ D PAL + + LKPGG +LIS
Sbjct: 58 ------LIFSLFDAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELLKPGGVLLIST 111
Query: 387 YCKSFGTPSVEFSEYIKQRG--YDLHDVKSYGQMLKDAGF 424
Y++ R + +S ++L+ AGF
Sbjct: 112 PLADDDARLFANWHYLRPRNTHISFYSEESLKRLLEKAGF 151
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-16
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 288 LDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKT 344
LD+GCG G + + + G+D+S + A ER A+GL +V +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTV 382
SFDV+ + + + H+ D A+ ++ + LKPGG +
Sbjct: 61 LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-16
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 287 VLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP 346
+LD+GCG G +A V G+D+S + A ER V F VAD +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60
Query: 347 ENSFDVIYSRDTILHI---QDKPALFKSFFKWLKPGG 380
E SFD++ L + AL + + L+PGG
Sbjct: 61 EGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTK-K 343
+VLD+GCG G +A V G+D+S + A + A L VE D +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 344 TYPENSFDVIYSRDTILHI-QDKPALFKSFFKWLKPGGTVLISDY 387
+ SFDVI S + H+ +D + + LKPGG ++++
Sbjct: 61 PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 9e-15
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 20/124 (16%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF------DVHVVGIDLSINMISFALERA 326
++ + L ++PG KVLD+ CG GD +A VVG+D S M++ E+
Sbjct: 41 RKTIKWLGVRPGDKVLDLACGT--GD--LAIALAKAVGKTGEVVGLDFSEGMLAVGREKL 96
Query: 327 I--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTI---L-HIQDKPALFKSFFKWLKPGG 380
GL +VEF D +P+NSFD + TI L ++ D + ++ LKPGG
Sbjct: 97 RDLGLSGNVEFVQGDAEALPFPDNSFDAV----TIAFGLRNVPDIDKALREMYRVLKPGG 152
Query: 381 TVLI 384
++I
Sbjct: 153 RLVI 156
|
Length = 239 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCS-VEFE 336
LKPG+ VLD+G G GG D ++A + V+G+D++ M++ A A + VEF
Sbjct: 75 LKPGETVLDLGSG-GGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFR 133
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV 396
+ + +NS DVI S I DK +FK F+ LKPGG ISD V
Sbjct: 134 LGEIEALPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV--------V 185
Query: 397 ---EFSEYIKQRGYDLH--------DVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELD 445
E E I+ +L+ + Y ML +AGFVDI + + E + D
Sbjct: 186 LRGELPEEIRNDA-ELYAGCVAGALQEEEYLAMLAEAGFVDITIQPKREYRIP------D 238
Query: 446 AIEKDKDAFIKDFSEV 461
A E +D I ++
Sbjct: 239 AREFLEDWGIAPGRQL 254
|
Length = 272 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-14
Identities = 43/111 (38%), Positives = 60/111 (54%), Gaps = 7/111 (6%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEF 335
KL LKPG +LD+GCG GG A+++DV+VVG+ LS N A +R A GL+ VE
Sbjct: 57 KLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKHARQRVAAEGLQRKVEV 116
Query: 336 EVADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI 384
+ D + + E FD I S H+ + FK + L PGG +L+
Sbjct: 117 LLQD--YRDFDEP-FDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLL 164
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-14
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS-VEFEVADC 340
PG +VLD+GCG G +A F V G+DLS M+ A E A + F D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387
FD ++ + L + LKPGG ++++
Sbjct: 61 PDALDLLEGFDAVFIGGGGGDL---LELLDALASLLKPGGRLVLNAV 104
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 9e-14
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 12/167 (7%)
Query: 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344
VLD+GCG G + +F + D+S M++ A + L +V+F D K
Sbjct: 37 SVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTK---LSENVQFICGDAEKLP 93
Query: 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV-EFSEYIK 403
++SFD+I S + D + LKPGG + S +FG ++ E +
Sbjct: 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFS----TFGPGTLHELRQSFG 149
Query: 404 QRGYDLHDVKSYGQMLKDAG-FVDIIAEDRTEQFVQVLQ--RELDAI 447
Q G + +LK++ + + E T F L R L
Sbjct: 150 QHGLRYLSLDELKALLKNSFELLTLEEELITLSFDDPLDVLRHLKKT 196
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-13
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 59 LEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117
L+ G G G LA++ V +D ++ + KF+ D DL F
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR----APRKFVVGDAE--DLPFP 54
Query: 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
++S D++ S+ +L +L D E+ + + LK GG +
Sbjct: 55 DESFDVVVSSLVLHHLPD--PERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 8e-13
Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEV 337
KL LKPG +VLD+GCG GG Y A+ + V VVG+ +S A ER GL VE +
Sbjct: 162 KLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL--PVEIRL 219
Query: 338 ADCTKKTYPE--NSFDVIYS 355
D Y + FD I S
Sbjct: 220 QD-----YRDLNGQFDRIVS 234
|
Length = 383 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 5e-12
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK 330
+ V + + GQKVLDV CG G +A V G+D S M+ A +++ L
Sbjct: 29 RRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LP 87
Query: 331 CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
++EF AD + +NSFD + + ++ D + ++ LKPGG ++I
Sbjct: 88 LNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-11
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVI---KKNEEVNGHFENVKFMCA 107
G VL+ G G G T LA+K V+ +D + I K+N + G +ENV+F+
Sbjct: 3 SGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFIQG 61
Query: 108 DVTS-PDLTFSEDSVDMMFSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFRESC 161
D+ P L ++S D++ SN +L +L D +V + R+ LK GG + +
Sbjct: 62 DIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRV---LKPGGVLIVSDPV 114
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 2e-10
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 34/185 (18%)
Query: 273 KEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLSINMISFALERAI-G 328
K+F K +K G K LDV G G F ++D VVG+D++ NM+ ++A
Sbjct: 36 KDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEE 95
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
K ++EF + + + ++SFD++ + + D + K F+ LKPGG V C
Sbjct: 96 GKYNIEFLQGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRV----VC 151
Query: 389 KSFGTP--------------------------SVEFSEYIKQRGYDLHDVKSYGQMLKDA 422
F P S + +Y+++ D D K+ M + A
Sbjct: 152 LEFSKPENPLLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQESIRDFPDQKTLASMFEKA 211
Query: 423 GFVDI 427
GF +
Sbjct: 212 GFKSV 216
|
Length = 233 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-10
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 57 TVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEV--NGHFENVKFMCADVTSPD 113
VL+ G G G LA V +D ++ + +NV+ + D
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+++S D++ S+ L +L + ++ + E + LK GG +
Sbjct: 61 P-EADESFDVIISDPPLHHLVE-DLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 18/155 (11%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS 332
+ +A++ L+ ++V+D+GCG G +A ++ D + GID S M++ A +R
Sbjct: 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----D 76
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT--VLISDYCKS 390
FE AD PE D++++ + + D P L L PGG V + D +
Sbjct: 77 ATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD---N 132
Query: 391 FGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425
PS + R + D + Q L G
Sbjct: 133 LDEPS-----HRLMR--ETADEAPFAQELGGRGLT 160
|
Length = 257 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 18/161 (11%)
Query: 47 LSLLP---PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFEN 101
L+LL + +VL+ G G G T L K+ IA D ++ + + EN
Sbjct: 24 LALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLS--EN 81
Query: 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161
V+F+C D L + S D++ SN L + D + + + LK GG + F S
Sbjct: 82 VQFICGDAEK--LPLEDSSFDLIVSNLALQWCDDL--SQALSELARVLKPGGLLAF--ST 135
Query: 162 FHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFEL 202
F G R+ S +++ NSFEL
Sbjct: 136 FGP-GTLHELRQSFGQHGLRYLSLD----ELKALLKNSFEL 171
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (135), Expect = 3e-09
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 10/176 (5%)
Query: 280 DLKPGQKVLDVGCGIGGGDFY-MADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEV 337
L G VLD+GCG G +VVG+DLS M++ A RA G V+F V
Sbjct: 45 LLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVV 104
Query: 338 ADCTKKTYP---ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP 394
AD P SFD++ S +LH+ + + LKPGG +++SD +
Sbjct: 105 ADALGGVLPFEDSASFDLVISL-LVLHLLPPAKALRELLRVLKPGGRLVLSDLLR----D 159
Query: 395 SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKD 450
+ G+ ++ +L+ + + D E + + EL+
Sbjct: 160 GLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLA 215
|
Length = 257 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-09
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADV 109
G VL+ G G G ELA+ V +D +++ E + F+ D
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
L E D +F L + L + + LK GG +
Sbjct: 61 PD-ALDLLEG-FDAVFIGGGGGDLLE-----LLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 5e-08
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK 342
PG +VLDVGCG G +A + V GID S I A A+ ++++ A
Sbjct: 59 PGLRVLDVGCGGGILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED 117
Query: 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
FDV+ + + H+ D + ++ K +KPGG + +S
Sbjct: 118 LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST 161
|
Length = 243 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDSVIK-KNEEVNGH 98
R LL G VL+ G G G ELA+ G V+ +D ++++ E G
Sbjct: 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL 67
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
NV+F+ D L F + S D + S+ +L +L D + + + L+ GG +
Sbjct: 68 GPNVEFVRGDADG--LPFPDGSFDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRV 120
|
Length = 241 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 58 VLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE-VNGHFENVKFMCADVTSPDLT 115
+L+ G G GR LA+ V +D ++ +E + V+F+ AD DL
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADAR--DLP 58
Query: 116 FSEDSVDMMFSNWL-LMYLSDKEVEKLAERMVKWLKVGG 153
F E S D++ L L YLS K++ L + L+ GG
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL 329
+++ K LK G++VLD GCG G +A + V +D+S M+ A RA G
Sbjct: 43 RKLLDWLPKDPLK-GKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGR 100
Query: 330 KCS--VEFEVADCTKKTYPENSFDVIYSRDTILHIQDK 365
+ VEFEV D FD++ D ++H
Sbjct: 101 DVAGNVEFEVNDLLSLC---GEFDIVVCMDVLIHYPAS 135
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-07
Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 20/117 (17%)
Query: 284 GQKVLDVGCGIGG-GDFYMADKFDVHVVGIDLSINMISFALERA------IGLKCSVEFE 336
G +VLD G G G D VVG++L A A GL V
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELD----PEAAALARRRLALAGLAPRVRVV 56
Query: 337 VADCTK-KTYPENSFDVI-----YSRDTILHIQDK---PALFKSFFKWLKPGGTVLI 384
V D + P+ SFD++ Y ++ + + LKPGG +++
Sbjct: 57 VGDARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 26/121 (21%)
Query: 276 VAK----LDLKPGQKVLDVGCGIGGGDFYMA---DKFDVHVVGIDLSINMISFALER--A 326
VA+ L+LKPG +VL++G G G Y A + VV I+ + A
Sbjct: 61 VARMLQLLELKPGDRVLEIGTGSG----YQAAVLARLVGRVVSIERIEELAEQARRNLET 116
Query: 327 IGLKCSVEFEVADCTKKTYPENSFDVIY---SRDTILHIQDKPALFKSFFKWLKPGGTVL 383
+G + +V D +K E +D I + + P ++ LKPGG ++
Sbjct: 117 LGYE-NVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV------P---EALLDQLKPGGRLV 166
Query: 384 I 384
I
Sbjct: 167 I 167
|
Length = 209 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEE 94
L + R ++SLL G VL+ G G LAK G V+ LD +S+++ E
Sbjct: 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE 93
Query: 95 --VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG 152
+NV+F+ D +L F ++S D + ++ L ++D + + L E M + LK G
Sbjct: 94 KLKKKGVQNVEFVVGDAE--NLPFPDNSFDAVTISFGLRNVTDID-KALKE-MYRVLKPG 149
Query: 153 G 153
G
Sbjct: 150 G 150
|
Length = 238 |
| >gnl|CDD|234556 TIGR04345, ovoA_Cterm, putative 4-mercaptohistidine N1-methyltranferase | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE 324
K ++ LD+GC +G F +A FD V GID S I A+
Sbjct: 40 KSRKRALDIGCAVGRASFELARYFD-EVDGIDFSARFIRPAVA 81
|
Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes C-terminal putative 4-mercaptohistidine N1-methyltranferase domain [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 242 |
| >gnl|CDD|234970 PRK01683, PRK01683, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS 332
+ +A++ L+ + V+D+GCG G + +++ + GID S M++ A R
Sbjct: 22 DLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD---- 77
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT 381
+F AD P+ D+I++ ++ + D LF L PGG
Sbjct: 78 CQFVEADIASWQPPQAL-DLIFANASLQWLPDHLELFPRLVSLLAPGGV 125
|
Length = 258 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 41/182 (22%), Positives = 76/182 (41%), Gaps = 20/182 (10%)
Query: 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTK 342
+VLD GCG G +A++ + + G +S ER A+GL+ + D K
Sbjct: 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61
Query: 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-------- 394
+P+ +D+++ + I HI+DK LF + + LK GG ++++D+ + +
Sbjct: 62 DPFPDT-YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTS 120
Query: 395 -SVEFSEYIKQ---RGYDLHDVKSYGQ----MLKDAGFVDIIAEDRTEQFVQVLQRELDA 446
V E+ + + + L D GF D + + +V +R
Sbjct: 121 YLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLYQDDLDEVTKRHFRG 180
Query: 447 IE 448
I
Sbjct: 181 IA 182
|
Length = 224 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 5/100 (5%)
Query: 59 LEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116
L+ G G G L + +D + ++ E + + + D
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 117 SED-SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
+ S D++ ++ +L +L+D + + + LK GG +
Sbjct: 61 LDPGSFDVVVASNVLHHLADP--RAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 5e-06
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 55 GKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVI----KKNEEVNGHFENVKFMCAD 108
G VL+ GAG G F A+ V+ ++ +D ++ + G V+ + D
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVE-LDPEAAALARRRLALAGLAPRVRVVVGD 59
Query: 109 VTSPDLTFSEDSVDMMFSN--WLLMYLSDKEVEKLAERMV----KWLKVGGYIFF 157
+ S D++ N + K+ L +R + + LK GG +
Sbjct: 60 ARELL-ELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVV 113
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 284 GQKVLDVGCGIGGGDFYMAD-KFDVHVVGIDLSINMISFALERAI--GLKCSVEFE---V 337
G +VLDVGCG G +A +V GID S I A A L +E+ V
Sbjct: 46 GLRVLDVGCGGGLLSEPLARLGANV--TGIDASEENIEVAKLHAKKDPLL-KIEYRCTSV 102
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY---CKSFGTP 394
D +K SFDV+ + + H+ D A ++ + LKPGG + S KS+
Sbjct: 103 EDLAEK--GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLL- 159
Query: 395 SVEFSEYI 402
++ +EYI
Sbjct: 160 AIVGAEYI 167
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 9e-06
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 3/113 (2%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK 330
K+ + +++++ G LDV CG +A+ + HV+G+D S NM+S ++
Sbjct: 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG 94
Query: 331 CS-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTV 382
VE + + + +NSFD + + ++ D + + ++ +KPGG V
Sbjct: 95 LHNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKV 147
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 23/165 (13%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS 332
+ +A++ + ++V+D+GCG G Y+A ++ + +D S M++ A ER
Sbjct: 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERG------ 73
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392
V+ D P+ DV+ S + + + L + L PG + + +F
Sbjct: 74 VDARTGDVRDWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ-VPGNFD 131
Query: 393 TPS------VEFSEYIKQRGYDL--------HDVKSYGQMLKDAG 423
PS + E + D+ Y ++L DAG
Sbjct: 132 APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG 176
|
Length = 255 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 43 RPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVN---G 97
R ++L LP P +GK VL+ G G G + ELAK+ V A+D + +++
Sbjct: 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRD 101
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERM 145
NV+F D+ S F D V M L++ ++ K +
Sbjct: 102 VAGNVEFEVNDLLSLCGEF--DIVVCMDV---LIHYPASDMAKALGHL 144
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 43/177 (24%), Positives = 72/177 (40%), Gaps = 37/177 (20%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALE--RAIGLKC 331
VA+L + PG +VL+ G G G Y+A + HV ++ + A E GL
Sbjct: 87 VARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD 146
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V ++ D + E+ D + L + D + + LKPGG V++
Sbjct: 147 RVTLKLGDVREGIDEED-VDAV-----FLDLPDPWNVLEHVSDALKPGGVVVV------- 193
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIE 448
+S ++Q V+ + L++ GFVDI A V+ L R + +
Sbjct: 194 ------YSPTVEQ-------VEKTVEALRERGFVDIEA-------VETLVRRWEVRK 230
|
Length = 256 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALER-----AIGLKCSVE 334
K G +VLD+ CG G F +++K D V+G+D S ++ A R K +E
Sbjct: 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKN-IE 130
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
+ D T + + FD I + ++ D+ + ++ LKPG V I D+ KS
Sbjct: 131 WIEGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS 186
|
Length = 261 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVK 103
++LS + E VL+ G+G+G + +K G HV +D + ++ + N ++
Sbjct: 43 KILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIE 102
Query: 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161
F D+ D F E++ DM++S +++LS + +KL E+ KWLK G + + C
Sbjct: 103 FEANDILKKD--FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158
|
Length = 263 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 20/138 (14%)
Query: 258 VFGVGFVSTGGIETTKEFVAK-LDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLS 315
VF S G ++ + L G KVLD+GCG G +A + D+ V +D++
Sbjct: 10 VF-----SHGRLDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDIN 64
Query: 316 INMISFALE--RAIGLKCSVEFEVADCTKKTYPENSFDVIYS-------RDTILHIQDKP 366
+ A A GL+ + E +D FD+I S + T +
Sbjct: 65 ARALESARANLAANGLE-NGEVFWSDLYSAV-EPGKFDLIISNPPFHAGKATDYDVAQ-- 120
Query: 367 ALFKSFFKWLKPGGTVLI 384
+ LKPGG + I
Sbjct: 121 RFIAGAARHLKPGGELWI 138
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 20/112 (17%)
Query: 284 GQKVLDVGCGIGGGDFY--MADKFDVHVVGIDLSINMISFALERAI--GLK-----CSVE 334
G++VLDVGC GGG MA + V GID S I A A+ GLK + E
Sbjct: 49 GKRVLDVGC--GGGILSESMA-RLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAE 105
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALF-KSFFKWLKPGGTVLIS 385
E+A +P FDV+ + + H+ D PA F ++ K +KPGG V S
Sbjct: 106 -ELAA----EHPG-QFDVVTCMEMLEHVPD-PASFVRACAKLVKPGGLVFFS 150
|
Length = 233 |
| >gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 287 VLDVGCGIGGGDFYMA-------DKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
+LD+GCG GGD + D + V ID ++FA + V+D
Sbjct: 64 LLDIGCG--GGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSD 121
Query: 340 CTKKTYPENS-FDVIYSRDTILHIQDKPAL 368
E FDV+ S + LH D +
Sbjct: 122 ELV---AEGERFDVVTS-NHFLHHLDDAEV 147
|
Length = 232 |
| >gnl|CDD|227310 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIG--GGDFY-MADKFDVHVVGIDLSINMISFALERAIGLK 330
E + K DL P +++LD+GCG G G MAD + G+D+S NM++ A E+ +
Sbjct: 116 EMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD----RLTGVDISENMLAKAHEKGL-YD 170
Query: 331 CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGG 380
E + E FD+I + D + ++ LF L PGG
Sbjct: 171 TLYVAEAVLFLEDLTQER-FDLIVAADVLPYLGALEGLFAGAAGLLAPGG 219
|
Length = 287 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 25/113 (22%), Positives = 47/113 (41%), Gaps = 8/113 (7%)
Query: 279 LDLKPGQK---VLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEF 335
L + P +K VLD GCG G Y ++ V +DLS M++ A ++ + +
Sbjct: 35 LAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQK----DAADHY 89
Query: 336 EVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
D +FD+ +S + + + ++ ++PGG V +
Sbjct: 90 LAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142
|
Length = 251 |
| >gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENV 102
+L LL G VLE G G G LA+ G V++++ I+ + ++N E G +ENV
Sbjct: 64 MLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG-YENV 122
Query: 103 KFMCAD 108
D
Sbjct: 123 TVRHGD 128
|
Length = 209 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 54 EGKTVLEFGAGIG-------RFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVK 103
G+TVL+ G+G G R G G VI +D ++ + N G + NV+
Sbjct: 77 PGETVLDLGSGGGFDCFLAARRVGP----TGKVIGVDMTPEMLAKARANARKAG-YTNVE 131
Query: 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE-VEKLAERMVKWLKVGG 153
F ++ L +++SVD++ SN ++ DKE V K A R+ LK GG
Sbjct: 132 FRLGEIE--ALPVADNSVDVIISNCVINLSPDKERVFKEAFRV---LKPGG 177
|
Length = 272 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 6e-04
Identities = 30/141 (21%), Positives = 46/141 (32%), Gaps = 24/141 (17%)
Query: 49 LLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCAD 108
L G VL+ G G G L ++ V +D + +
Sbjct: 17 LPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFS---LFDA-------- 65
Query: 109 VTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS 168
PD D++ + +L +L D L +++ + LK GG + D
Sbjct: 66 ---PDPAVLAGKYDLITAFEVLEHLPD--PPALLQQLRELLKPGGVLLISTPLA---DDD 117
Query: 169 KRKHNPTHYREPR-----FYS 184
R HY PR FYS
Sbjct: 118 ARLFANWHYLRPRNTHISFYS 138
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH---VIALDFIDSVIKKNEE 94
L + R + L+ ++G+ VL+ G G ELAK A V +DF +++ ++
Sbjct: 23 LHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKK 82
Query: 95 VNGHFENVKFMCADVTSPDLTFSEDSVD 122
+ N++F+ AD L F ++S D
Sbjct: 83 KSELPLNIEFIQADAE--ALPFEDNSFD 108
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 7e-04
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VEFEV 337
L+L G++VLD+ CG+G +A + V G+++S + A E A VEF
Sbjct: 289 LELAGGERVLDLYCGVGTFGLPLAKRVK-KVHGVEISPEAVEAAQENAAANGIDNVEFIA 347
Query: 338 ADC---TKKTYPENSFDVI 353
D T + DV+
Sbjct: 348 GDAEEFTPAWWEGYKPDVV 366
|
Length = 432 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 9e-04
Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDS---VIKKNEEVN 96
R + + L G VL+ G G LAK G V+ LDF + V ++
Sbjct: 40 RRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL 99
Query: 97 GHFENVKFMCADVTSPDLTFSEDSVD 122
G NV+F+ D L F ++S D
Sbjct: 100 GLSGNVEFVQGDAE--ALPFPDNSFD 123
|
Length = 239 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 9e-04
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID------SVIKKNEEVNGHFE 100
LS LP G VL+ G G G LAK++ + + +D + N NG E
Sbjct: 24 LSHLPKPLGGKVLDLGCGYGVLGAALAKRSPD-LEVTMVDINARALESARANLAANG-LE 81
Query: 101 NVKFMCADVTSPDLTFSEDSVDMMFSN 127
N + +D+ S D++ SN
Sbjct: 82 NGEVFWSDLYSA---VEPGKFDLIISN 105
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 13/111 (11%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALE--RAIGLKCSVE 334
LDLK G KVL++G G G +A+ VV I+ + A + + +G +VE
Sbjct: 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVE 130
Query: 335 FEVADCTKKTYPENS-FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
V D T Y EN+ +D IY P + K + LK GG ++I
Sbjct: 131 VIVGDGTLG-YEENAPYDRIYVTAA------GPDIPKPLIEQLKDGGIMVI 174
|
Length = 212 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFEN 101
L L G+ VL+ G+G F LAK+ V ++ + ++N NG +N
Sbjct: 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANG-IDN 342
Query: 102 VKFMCADV 109
V+F+ D
Sbjct: 343 VEFIAGDA 350
|
Length = 432 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 52 PYEGKTVLEFGAGIGRFT-GELAKKAGHVIALDFIDS----VIKKNEEVNGHFENVKFMC 106
EGKTVL+ GAG G G A V+A+D ID + + N E +V+F+
Sbjct: 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVD-IDPEALEIARANAEELL--GDVEFVV 99
Query: 107 ADVTSPDLTFSE 118
ADV+ F
Sbjct: 100 ADVSDFRGKFDT 111
|
Length = 198 |
| >gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDS 87
+++ G TVLE G G G T EL ++A V A++ ID
Sbjct: 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIE-IDP 45
|
Length = 169 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.001
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 25/126 (19%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI---GLKCSVEF 335
+ ++LD+G G G +A + +VG+++ A +R + L+ ++
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA-QRNVALNPLEERIQV 99
Query: 336 EVADCT--KKTYPENSFDVI------YSRDTILHIQDKPAL--------FKSFFKW---- 375
AD K SFD+I + + + L+ A+ + +
Sbjct: 100 IEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKL 159
Query: 376 LKPGGT 381
LKPGG
Sbjct: 160 LKPGGR 165
|
Length = 248 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV 333
++A+L + PG +VLD+GCG G + + ++ V GI+L ++ + + + SV
Sbjct: 5 RYIARL-IPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAKGL----SV 59
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTI 359
AD + +P+ SFD + T+
Sbjct: 60 IQGDADKGLEHFPDKSFDYVILSQTL 85
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
| >gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHV--VGIDLSINMISFALERAI------GLK 330
L+LKPG +VL++G G G Y+ F V VG+ +SI I +E A GL+
Sbjct: 69 LELKPGMRVLEIGSGSG----YLTACFARMVGEVGLVVSIEHIPELVEIARRNLEKLGLE 124
Query: 331 CSVEFEVADCTKKTYPENS-FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+V V D + +PE + +D I+ P + ++ LK GG ++I
Sbjct: 125 -NVIVVVGDGRQG-WPEFAPYDAIHVGAAA------PEIPEALIDQLKEGGRLVI 171
|
Length = 210 |
| >gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIA 81
+G VLE G G G T ELAK+A V A
Sbjct: 29 DGDPVLEIGPGKGALTDELAKRAKKVYA 56
|
Length = 258 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 34/159 (21%), Positives = 55/159 (34%), Gaps = 56/159 (35%)
Query: 43 RPE-------VLSLLPPYEGKTVLEFGAGIGRFTGELA-------KKAGHVIALDFID-- 86
RPE L L E VL+ G G +G +A A V A+D
Sbjct: 90 RPETEELVEWALEALLLKEPLRVLDLGTG----SGAIALALAKERPDA-EVTAVDISPEA 144
Query: 87 -SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN--------WLLMYLSDKE 137
+V ++N + +G V+F+ D P D++ SN L+ E
Sbjct: 145 LAVARRNAK-HGLGARVEFLQGDWFEP---LPGGRFDLIVSNPPYIPEADIHLL---QPE 197
Query: 138 V-------------------EKLAERMVKWLKVGGYIFF 157
V ++ E+ ++LK GG++
Sbjct: 198 VRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236
|
Length = 275 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDS---VIKKNE 93
KEE R LS L P G + + GAG G T E A +G VIA++ + +I++N
Sbjct: 19 KEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNA 78
Query: 94 EVNGHFENVKFMCADVTSPDLTFSEDSVDMMF 125
G +N++ + D +P+ S D +F
Sbjct: 79 ARFG-VDNLEVVEGD--APEALPDLPSPDAIF 107
|
Length = 187 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 38.7 bits (87), Expect = 0.004
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 10/140 (7%)
Query: 29 MMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTG--ELAKKAGHVIALDFID 86
L LD +L LLP G VL+ G G GR L + +V+ +D
Sbjct: 25 AFLLLAEELLDLLLVLRLLRLLP--GGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSP 82
Query: 87 SVIK--KNEEVNGHFENVKFMCADVTSPDLTFSE-DSVDMMFSNWLLMYLSDKEVEKLAE 143
++ + V F+ AD L F + S D++ S +L L K
Sbjct: 83 EMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLHLL---PPAKALR 139
Query: 144 RMVKWLKVGGYIFFRESCFH 163
+++ LK GG + +
Sbjct: 140 ELLRVLKPGGRLVLSDLLRD 159
|
Length = 257 |
| >gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 29/138 (21%)
Query: 263 FVSTGGIETTKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLS- 315
F G TKE + +KL +PG ++ D+G G G A V+ I+
Sbjct: 9 FERDEGGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDE 68
Query: 316 --INMISFALERAIGLKCS----VEFEVADCTKKTYPENSFDVIY---SRDTILHIQDKP 366
+ +I R VE + + S D I+ +
Sbjct: 69 EALELIERNAAR---FGVDNLEVVEGDAPEALPD---LPSPDAIFIGGGGNI-------E 115
Query: 367 ALFKSFFKWLKPGGTVLI 384
+ ++ ++ LKPGG ++
Sbjct: 116 EILEAAWERLKPGGRLVA 133
|
Length = 187 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVEF 335
G ++LD GCG+G +A + VV D+S M+ A ERA GL ++ F
Sbjct: 58 ADGDLTGLRILDAGCGVGSLSIPLA-RRGAKVVASDISPQMVEEARERAPEAGLAGNITF 116
Query: 336 EVAD 339
EV D
Sbjct: 117 EVGD 120
|
Length = 230 |
| >gnl|CDD|214534 smart00138, MeTrc, Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLI 384
LK V F + ++ P FD+I+ R+ +++ + L F + LKPGG + +
Sbjct: 183 LKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. Length = 264 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 26/129 (20%), Positives = 49/129 (37%), Gaps = 21/129 (16%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK--FDVHVVGIDLSINMISFALE--R 325
ET L +++L++G IG +MA D + I+ A E
Sbjct: 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA 105
Query: 326 AIGLKCSVEF----EVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKW----LK 377
G+ +E + D + SFD+++ I A + + + L+
Sbjct: 106 EAGVDDRIELLLGGDALDVLSRLLDG-SFDLVF-------IDADKADYPEYLERALPLLR 157
Query: 378 PGGTVLISD 386
PGG ++++D
Sbjct: 158 PGG-LIVAD 165
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 100.0 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.97 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.97 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.97 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.93 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.92 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.9 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.9 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.88 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.86 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.86 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.86 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.86 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.84 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.84 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.83 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.83 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.83 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.83 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.82 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.82 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.81 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.81 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.8 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.8 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.8 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.79 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.79 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.78 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.78 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.78 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.77 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.77 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.76 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.76 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.76 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.75 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.75 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.75 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.75 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.75 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.75 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.74 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.74 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.74 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.74 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.74 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.73 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.73 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.73 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.73 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.73 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.72 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.72 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.72 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.71 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.71 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.7 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.7 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.7 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.69 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.69 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.69 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.69 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.69 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.68 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.68 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.68 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.67 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.67 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.66 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.66 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.66 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.66 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.66 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.65 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.65 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.65 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.65 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.64 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.64 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.64 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.63 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.63 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.63 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.62 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.62 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.62 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.62 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.61 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.61 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.61 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.61 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.6 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.6 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.6 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.59 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.59 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.59 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.58 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.58 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.57 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.57 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.56 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.56 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.56 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.56 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.56 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.56 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.55 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.55 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.55 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.54 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.54 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.54 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.53 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.53 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.52 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.52 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.52 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.52 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.52 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.51 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.51 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.51 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.51 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.51 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.5 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.5 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.5 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.5 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.49 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.49 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.49 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.49 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.47 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.47 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.47 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.47 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.47 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.47 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.46 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.45 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.45 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.45 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.45 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.45 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.45 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.44 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.44 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.44 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.43 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.43 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.43 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.43 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.42 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.42 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.41 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.41 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.41 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.41 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.41 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.4 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.4 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.4 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.4 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.4 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.39 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.39 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.39 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.39 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.39 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.38 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.38 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.37 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.37 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.37 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.36 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.36 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.35 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.35 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.35 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.35 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.35 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.34 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.34 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.33 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.33 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.33 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.33 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.32 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.32 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.31 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.3 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.29 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.29 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.29 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.29 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.29 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.28 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.28 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.27 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.27 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.27 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.27 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.26 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.26 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.26 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.24 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.23 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.22 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.21 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.21 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.21 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.2 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.2 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.19 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.19 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.19 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.19 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.18 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.17 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.17 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.17 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.16 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.15 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.13 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.13 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.13 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.12 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.12 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.12 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.12 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.11 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.11 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.11 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.11 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.09 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.09 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.09 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.08 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.08 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.08 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.08 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.07 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.07 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.06 | |
| PLN02366 | 308 | spermidine synthase | 99.06 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.06 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.06 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.06 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.06 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.05 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 99.04 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.04 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.04 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.02 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.01 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.01 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 99.01 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 99.01 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.0 | |
| PLN02476 | 278 | O-methyltransferase | 98.99 | |
| PLN02366 | 308 | spermidine synthase | 98.99 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.99 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.99 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.99 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.98 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.97 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.97 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.96 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.96 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.96 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.95 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.95 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.95 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.94 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.94 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.94 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.93 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.92 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.91 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.9 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.9 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.9 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.89 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.89 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.89 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.89 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.87 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.86 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.86 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.86 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.85 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.85 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.85 | |
| PLN02476 | 278 | O-methyltransferase | 98.84 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.84 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.84 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.83 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.81 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.81 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.81 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.8 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.8 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.79 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.79 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.79 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.78 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.78 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.77 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.76 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.76 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.76 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.75 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.75 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.74 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.73 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.73 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.72 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.72 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.72 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.71 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.71 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.7 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.7 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.69 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.67 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.67 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.66 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.64 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.64 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.61 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.61 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.6 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| PLN02823 | 336 | spermine synthase | 98.59 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.57 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.57 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.56 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.54 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.54 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.54 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.53 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.53 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.52 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.5 | |
| PLN02823 | 336 | spermine synthase | 98.49 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.48 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.46 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.46 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.45 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.44 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.44 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.43 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.43 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.42 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.42 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.42 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.4 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.39 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.39 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.38 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.35 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.35 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.35 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.35 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.34 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.33 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.32 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.31 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.31 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.3 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.29 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.29 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.28 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.28 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.27 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.25 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.25 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.24 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.23 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.23 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.21 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.2 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.2 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.19 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.19 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.17 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.17 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.17 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.16 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.15 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.14 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.13 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.12 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.11 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.11 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.1 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.1 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.07 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.06 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.05 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.03 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.03 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.02 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.0 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.99 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.99 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.98 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.98 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.94 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.93 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.91 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.9 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.9 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.89 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.89 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.89 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.89 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.87 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.87 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.87 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.81 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.79 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.78 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.78 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.77 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.77 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.76 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.72 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.71 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.67 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.67 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.66 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.65 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.63 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.61 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.6 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.6 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.6 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.58 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.56 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.55 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.53 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.47 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.47 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.44 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.44 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.41 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.41 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.4 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.39 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.36 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.36 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.31 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.3 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.27 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.26 |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=453.59 Aligned_cols=452 Identities=85% Similarity=1.359 Sum_probs=402.2
Q ss_pred cCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC
Q 043471 20 HSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF 99 (485)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~ 99 (485)
++...+.+.||.+..+..++...+..+++.+...++.+|||||||+|.++..|++.+.+|+|+|+|++|++.+++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~ 82 (475)
T PLN02336 3 HSVDLTVEAMMLDSKASDLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHY 82 (475)
T ss_pred ccccccHHHHhhhcchhhcCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccC
Confidence 45567788899998888899999999999998878889999999999999999999889999999999999887765545
Q ss_pred CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCC
Q 043471 100 ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYRE 179 (485)
Q Consensus 100 ~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (485)
+++.++++|+....+++++++||+|+|+.+++|++++....++++++++|+|||++++.+.+........+..++.+++.
T Consensus 83 ~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~ 162 (475)
T PLN02336 83 KNVKFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYRE 162 (475)
T ss_pred CceEEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecC
Confidence 68999999997655677889999999999999999877889999999999999999999988766555666667888888
Q ss_pred hhHHHHHhhhcceecCCCCceeEEEeeeeecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh
Q 043471 180 PRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF 259 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 259 (485)
..+|.++|.++++....+.........+..++.+..+..+|....+..+.+.......|..+++...|...++..+..+|
T Consensus 163 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~ 242 (475)
T PLN02336 163 PRFYTKVFKECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVF 242 (475)
T ss_pred hHHHHHHHHHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEEEeecCCcchhHHHHhhhhccccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999888877777776666778888888888888999999999
Q ss_pred ccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEcc
Q 043471 260 GVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339 (485)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d 339 (485)
|..+....+...++.+++.+.++++.+|||||||+|..+..+++..+++++|+|+|+.+++.|+++..+...++++.++|
T Consensus 243 g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d 322 (475)
T PLN02336 243 GEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVAD 322 (475)
T ss_pred CCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC
Confidence 99999999988899999999888889999999999999999998778899999999999999999887666789999999
Q ss_pred CCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHH
Q 043471 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML 419 (485)
Q Consensus 340 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (485)
+...++++++||+|+|..+++|++++..++++++|+|||||+++++++......+...+..+....+..+.+..++.+++
T Consensus 323 ~~~~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 323 CTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML 402 (475)
T ss_pred cccCCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99988888899999999999999999999999999999999999998877655555556666666666788999999999
Q ss_pred HhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 420 KDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 420 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
+++||+++.+++.+.+|..++..|.+.++....++...++++.+......+.
T Consensus 403 ~~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (475)
T PLN02336 403 KDAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWK 454 (475)
T ss_pred HHCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999988887765554443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=238.67 Aligned_cols=229 Identities=41% Similarity=0.765 Sum_probs=201.2
Q ss_pred HHhhhhhhccccchhHHHHHhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHH
Q 043471 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINM 318 (485)
Q Consensus 239 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~ 318 (485)
+.|+|..+|+..++..|+.++|.+++++++.+.+..+++.+.++++.+|||||||+|..+..+++..+++|+|+|+|+.|
T Consensus 8 ~~~~~~~~y~~~~~~~~e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~ 87 (263)
T PTZ00098 8 ITYLENNQYSDEGIKAYEFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM 87 (263)
T ss_pred hhhhhccccccccchhHHHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988777899999999999
Q ss_pred HHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCC-CC
Q 043471 319 ISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGT-PS 395 (485)
Q Consensus 319 ~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~ 395 (485)
++.|+++... ..++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||+++++++...... ..
T Consensus 88 ~~~a~~~~~~-~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~ 166 (263)
T PTZ00098 88 VNIAKLRNSD-KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWD 166 (263)
T ss_pred HHHHHHHcCc-CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcH
Confidence 9999998754 4579999999998888889999999999999986 889999999999999999999987654421 22
Q ss_pred hhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhh
Q 043471 396 VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLD 468 (485)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (485)
..+..+.......+.+..++.++|+++||+++..++.+.++...+...++.++++++++.+.++++.......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (263)
T PTZ00098 167 EEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKLYSEKEYNSLKD 239 (263)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHhcCHHHHHHHHH
Confidence 2233344444456789999999999999999999999999999999999999999999999999887665433
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=231.12 Aligned_cols=229 Identities=27% Similarity=0.445 Sum_probs=197.5
Q ss_pred HHHhhccCc---hhHHHhhhh-hhccccchhHHHHHhccccccCCc-------hHHHHHHHHHcCCCCCCEEEEECCCCC
Q 043471 227 WQKVRSQND---RGFQQFLDN-VQYKLNGILRYERVFGVGFVSTGG-------IETTKEFVAKLDLKPGQKVLDVGCGIG 295 (485)
Q Consensus 227 ~~~~~~~~~---~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~vLDiGcG~G 295 (485)
.+.+..+|+ +.|..|+|+ +.|++. |+.... ..+.+.+++.++++||++|||||||+|
T Consensus 17 ~~~i~~HYDl~n~fy~l~Ld~~~~Ysca------------yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG 84 (283)
T COG2230 17 AENIQAHYDLSNDFYRLFLDPSMTYSCA------------YFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWG 84 (283)
T ss_pred hhhhhhHhhcchHHHHHhcCCCCceeeE------------EeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChh
Confidence 344444544 568899988 888886 444442 356778999999999999999999999
Q ss_pred hhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHH
Q 043471 296 GGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKS 371 (485)
Q Consensus 296 ~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~ 371 (485)
.+++++|++++++|+|+++|++|.+.+++++. ++..++++...|..+++ ++||-|+|.++++|+. +.+.+|+.
T Consensus 85 ~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~ 161 (283)
T COG2230 85 GLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKK 161 (283)
T ss_pred HHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHH
Confidence 99999999999999999999999999999765 56668999999988764 5599999999999995 59999999
Q ss_pred HHhcCCCCcEEEEEecccCCC---CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHH
Q 043471 372 FFKWLKPGGTVLISDYCKSFG---TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 372 ~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
++++|+|||++++........ ....+..+++.|.| .+++...+.+..+++||.+.+++....||+.++..|.++|+
T Consensus 162 ~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG-~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~ 240 (283)
T COG2230 162 VYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGG-ELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFE 240 (283)
T ss_pred HHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCC-cCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHH
Confidence 999999999999998766553 33456678888877 47789999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhhhhhhhhhhhhcc
Q 043471 449 KDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+++++...++++++++|...|.
T Consensus 241 ~~~~~a~~~~~e~~~r~w~~yl~ 263 (283)
T COG2230 241 ANRDEAIALYDERFYRMWELYLA 263 (283)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999988775
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-29 Score=234.28 Aligned_cols=225 Identities=28% Similarity=0.448 Sum_probs=169.4
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhcc--ccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGV--GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~ 312 (485)
+.|..|+|+ +.|++. +|.. .-.......+++.+++++.++||.+|||||||+|.++..+++++|++|+|+
T Consensus 19 dfy~l~Ld~~m~YS~~-------~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gi 91 (273)
T PF02353_consen 19 DFYRLFLDPTMKYSCA-------YFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGI 91 (273)
T ss_dssp HHHTTTS-TT---S-----------SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEE
T ss_pred HHHHHhcCCCCCCCCe-------ecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEE
Confidence 557778877 777765 1111 111112235677889999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 313 DLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 313 D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++|+++.+.+++++. ++..++++...|..+++ .+||.|++.++++|+ .+.+.+++++.++|||||++++....
T Consensus 92 tlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 92 TLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp ES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999999999999887 44567999999998765 389999999999999 47899999999999999999998765
Q ss_pred cCCC-------CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhh
Q 043471 389 KSFG-------TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEV 461 (485)
Q Consensus 389 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
.... .....+.+++.|.+ .+++.+++...++++||++.+++..+.||.+++..|.+++.++++++.+.|+++
T Consensus 169 ~~~~~~~~~~~~~~~~i~kyiFPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~~~~~ 247 (273)
T PF02353_consen 169 HRDPPYHAERRSSSDFIRKYIFPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEIIALFDEE 247 (273)
T ss_dssp E--HHHHHCTTCCCHHHHHHTSTTS----BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHHSHHH
T ss_pred cccccchhhcCCCceEEEEeeCCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 4332 12256778888876 477899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcc
Q 043471 462 FCFFHLDCLS 471 (485)
Q Consensus 462 ~~~~~~~~~~ 471 (485)
++|+|.-.|.
T Consensus 248 f~r~w~~yl~ 257 (273)
T PF02353_consen 248 FYRMWRYYLA 257 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=212.78 Aligned_cols=217 Identities=27% Similarity=0.374 Sum_probs=175.8
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhccccccC------CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGVGFVST------GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVH 308 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~ 308 (485)
+.|..+++. |.|+++ +|.. ....+...+++.+.++++.+|||||||+|.++..+++..+++
T Consensus 125 ~~y~l~ld~~m~ys~g------------~~~~~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~ 192 (383)
T PRK11705 125 DLFEAMLDPRMQYSCG------------YWKDADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVS 192 (383)
T ss_pred HHHHHhcCCCCccccc------------ccCCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCE
Confidence 347777766 666654 3322 123456678888899999999999999999999999887889
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 309 VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 309 v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|+|+|+|+.|++.|+++..+. .+++...|..++ +++||+|++..+++|+. +...+++++.++|||||++++++
T Consensus 193 V~giDlS~~~l~~A~~~~~~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 193 VVGVTISAEQQKLAQERCAGL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEEEeCCHHHHHHHHHHhccC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999999999999988643 478888887665 47899999999999985 46789999999999999999987
Q ss_pred cccCCC--CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhh
Q 043471 387 YCKSFG--TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCF 464 (485)
Q Consensus 387 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (485)
...... .......+++.+.+ .+++.+++.+.++ .||++.+++..+.||.+++..|.++++++++++.+.|++++++
T Consensus 268 i~~~~~~~~~~~~i~~yifp~g-~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~~~~r 345 (383)
T PRK11705 268 IGSNKTDTNVDPWINKYIFPNG-CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSERFYR 345 (383)
T ss_pred ccCCCCCCCCCCCceeeecCCC-cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 654432 12233445555544 4678888888766 5899999999999999999999999999999999999999999
Q ss_pred hhhhhcc
Q 043471 465 FHLDCLS 471 (485)
Q Consensus 465 ~~~~~~~ 471 (485)
+|..+|.
T Consensus 346 ~w~~yl~ 352 (383)
T PRK11705 346 MWRYYLL 352 (383)
T ss_pred HHHHHHH
Confidence 9987765
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-24 Score=191.94 Aligned_cols=161 Identities=30% Similarity=0.508 Sum_probs=134.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.-+.+++.+...+|.+|||+|||||.++..+++.. ..+|+|+|+|+.|++.|+++....+ .+++|+++|++++||+++
T Consensus 39 Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~ 118 (238)
T COG2226 39 WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN 118 (238)
T ss_pred HHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence 44577788777799999999999999999999987 3699999999999999999997543 249999999999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH-H----------------------HHHHhc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF-S----------------------EYIKQR 405 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~-~----------------------~~~~~~ 405 (485)
+||+|.+..+|++++|++++|+|++|+|||||++++.+...+........ . .++...
T Consensus 119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eS 198 (238)
T COG2226 119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAES 198 (238)
T ss_pred ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHH
Confidence 99999999999999999999999999999999999998877654332111 1 111111
Q ss_pred CCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 406 GYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 406 ~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
...+++.+++.++++++||+.+..+.
T Consensus 199 i~~~p~~~~l~~~~~~~gf~~i~~~~ 224 (238)
T COG2226 199 IRRFPDQEELKQMIEKAGFEEVRYEN 224 (238)
T ss_pred HHhCCCHHHHHHHHHhcCceEEeeEe
Confidence 23567889999999999999887544
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-24 Score=192.63 Aligned_cols=160 Identities=26% Similarity=0.474 Sum_probs=94.0
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
.+++.+...++.+|||+|||||.++..+++.. +.+|+|+|+|+.|++.|+++....+ .+++++++|++++|+++++|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 45566677889999999999999999999876 3699999999999999999986432 38999999999999999999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH----------------------HHHHHhcCCC
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF----------------------SEYIKQRGYD 408 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----------------------~~~~~~~~~~ 408 (485)
|+|++..++++++|+.++++|++|+|||||++++.++..+.......+ ..++...-..
T Consensus 118 D~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp EEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------
T ss_pred eEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999877654221111 0111111124
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+++.+++.++|+++||+.+..+..+
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~ 222 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLT 222 (233)
T ss_dssp -------------------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5678999999999999988765543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-23 Score=185.07 Aligned_cols=156 Identities=24% Similarity=0.341 Sum_probs=133.0
Q ss_pred CCCCCChhHHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--Cc
Q 043471 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GH 78 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~ 78 (485)
|.|.......+.-+.++++.+..|...+ +-.....+..+++.+++.+...+|.+|||||||||..+..+++.. .+
T Consensus 1 ~~~~~~~~k~~~v~~vF~~ia~~YD~~n---~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~ 77 (238)
T COG2226 1 FKMVAKDEKQEKVQKVFDKVAKKYDLMN---DLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGE 77 (238)
T ss_pred CCcccccccHHHHHHHHHhhHHHHHhhc---ccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCce
Confidence 3444444455677888888888776444 334566788899999999988899999999999999999999984 79
Q ss_pred EEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEE
Q 043471 79 VIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 79 v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
|+|+|+|++|++.|+++.... .+++|+++|++. +||+|++||+|.++..++++++ .+++|+|++|+|||||.++
T Consensus 78 v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~--LPf~D~sFD~vt~~fglrnv~d--~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 78 VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAEN--LPFPDNSFDAVTISFGLRNVTD--IDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred EEEEECCHHHHHHHHHHhhccCccceEEEEechhh--CCCCCCccCEEEeeehhhcCCC--HHHHHHHHHHhhcCCeEEE
Confidence 999999999999999997653 259999999999 8899999999999999999998 7799999999999999999
Q ss_pred EEeccCC
Q 043471 157 FRESCFH 163 (485)
Q Consensus 157 ~~~~~~~ 163 (485)
+.+....
T Consensus 154 vle~~~p 160 (238)
T COG2226 154 VLEFSKP 160 (238)
T ss_pred EEEcCCC
Confidence 9877643
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=192.54 Aligned_cols=171 Identities=27% Similarity=0.451 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCC-----CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCC
Q 043471 270 ETTKEFVAKLDL-----KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTK 342 (485)
Q Consensus 270 ~~~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~ 342 (485)
+....+++.+.+ .++.+|||||||+|.++..++++++++|+|+|+|+.|++.|+++.. +...++++.++|+.+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 456677887776 6788999999999999999999878899999999999999998765 344579999999999
Q ss_pred CCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC-----ChhHH----HHHHhcC-CCCCCH
Q 043471 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-----SVEFS----EYIKQRG-YDLHDV 412 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----~~~~~----~~~~~~~-~~~~~~ 412 (485)
+|+++++||+|++..+++|++|+..++++++|+|||||++++.++......+ ..... ....... ....+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~ 259 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCST 259 (340)
T ss_pred CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCH
Confidence 9999999999999999999999999999999999999999998865432111 11111 1111111 123578
Q ss_pred HHHHHHHHhCCCeEEEEeecchHHHHHH
Q 043471 413 KSYGQMLKDAGFVDIIAEDRTEQFVQVL 440 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 440 (485)
+++.++++++||+++.+++.+.+..+..
T Consensus 260 ~~~~~~l~~aGf~~v~~~d~s~~v~~~~ 287 (340)
T PLN02244 260 SDYVKLAESLGLQDIKTEDWSEHVAPFW 287 (340)
T ss_pred HHHHHHHHHCCCCeeEeeeCcHHHHHHH
Confidence 9999999999999999998887655443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=182.71 Aligned_cols=159 Identities=24% Similarity=0.358 Sum_probs=126.8
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc----CCCCCeEEEEccCCCCCCCCC
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI----GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~----~~~~~i~~~~~d~~~~~~~~~ 348 (485)
+++.+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+|++|++.|+++.. ....+++++++|+.++|++++
T Consensus 65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~ 144 (261)
T PLN02233 65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC 144 (261)
T ss_pred HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence 34556677889999999999999999988753 599999999999999987753 223479999999999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH---------------------HHhcCC
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY---------------------IKQRGY 407 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~---------------------~~~~~~ 407 (485)
+||+|++..+++|++++..++++++|+|||||++++.++..........+..+ ....-.
T Consensus 145 sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~ 224 (261)
T PLN02233 145 YFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSIN 224 (261)
T ss_pred CEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876543211111110 000012
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.+.+.+++.++|+++||+++......
T Consensus 225 ~f~s~~el~~ll~~aGF~~~~~~~~~ 250 (261)
T PLN02233 225 EYLTGEELEKLALEAGFSSAKHYEIS 250 (261)
T ss_pred hcCCHHHHHHHHHHCCCCEEEEEEcC
Confidence 36789999999999999988765543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=182.65 Aligned_cols=143 Identities=22% Similarity=0.341 Sum_probs=89.9
Q ss_pred HHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHH
Q 043471 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIK 90 (485)
Q Consensus 14 ~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~ 90 (485)
++.++..+..|..-.. -.....+..+++.+++.+...+|.+|||+|||||..+..++++ ..+|+|+|+|++|++
T Consensus 10 ~~~Fd~ia~~YD~~n~---~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~ 86 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMND---LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLE 86 (233)
T ss_dssp ------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHH
T ss_pred HHHHHHHHHHhCCCcc---ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHH
Confidence 5567777776664322 1334456677788888888888999999999999999999986 358999999999999
Q ss_pred HHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 91 KNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 91 ~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.|+++... ..+++++++|+++ +|+++++||+|++++.++++++ ..++++|++|+|||||.+++.+....
T Consensus 87 ~a~~k~~~~~~~~i~~v~~da~~--lp~~d~sfD~v~~~fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 87 VARKKLKREGLQNIEFVQGDAED--LPFPDNSFDAVTCSFGLRNFPD--RERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp HHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEEEEES-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HHHHHHHhhCCCCeeEEEcCHHH--hcCCCCceeEEEHHhhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 99988643 2489999999999 7789999999999999999998 66999999999999999999876543
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=173.25 Aligned_cols=174 Identities=21% Similarity=0.391 Sum_probs=139.4
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
++|||||||+|..+..+++.+ +++++|+|+|+.+++.+++++.. +..++++...|+...+++ ++||+|++..+++|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 379999999999999999886 57999999999999999998753 456789999999777664 58999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHH
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQ 441 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~ 441 (485)
++++..++++++++|||||++++.++......... . ........+..+|.++++++||++++..+.+.+|.+.+
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~---~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~l- 153 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIE--H---EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFL- 153 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEcccccCcccc--c---cccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhhc-
Confidence 99999999999999999999999986432211100 0 00112356889999999999999999999999998765
Q ss_pred HHHHHHHhcHHHHHH-Hhhhhhhhhh
Q 043471 442 RELDAIEKDKDAFIK-DFSEVFCFFH 466 (485)
Q Consensus 442 ~~~~~~~~~~~~~~~-~~~~~~~~~~ 466 (485)
|...+.++++++.. .+++.+.+.|
T Consensus 154 -~~~~f~~~~~~~~~~~~~~~~~~~~ 178 (224)
T smart00828 154 -YDPGFEDNLERLYQDDLDEVTKRHF 178 (224)
T ss_pred -cChhHHHHHHHhccccchHHHHHHH
Confidence 66777777777666 3666566655
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-21 Score=178.49 Aligned_cols=153 Identities=21% Similarity=0.353 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
....+++.+...++.+|||||||+|.++..++++. +.+|+|+|+|+.|++.|+++ ++++.++|+.+++ ++++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~-~~~~ 89 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK-PKPD 89 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC-CCCC
Confidence 45678888888888999999999999999999876 57999999999999999764 5789999998774 5679
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---------hHHHHHHh----cCCCCCCHHHHH
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---------EFSEYIKQ----RGYDLHDVKSYG 416 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~ 416 (485)
||+|+++.+++|++++..++++++++|||||++++..+......... .+...... .+..+.+.+.+.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 169 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYA 169 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHH
Confidence 99999999999999999999999999999999999854321111100 11111111 122456899999
Q ss_pred HHHHhCCCeEEEEe
Q 043471 417 QMLKDAGFVDIIAE 430 (485)
Q Consensus 417 ~~l~~aGf~~~~~~ 430 (485)
++|+++||++...+
T Consensus 170 ~~l~~aGf~v~~~~ 183 (255)
T PRK14103 170 ELLTDAGCKVDAWE 183 (255)
T ss_pred HHHHhCCCeEEEEe
Confidence 99999999865433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-20 Score=185.55 Aligned_cols=277 Identities=18% Similarity=0.229 Sum_probs=175.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... ..+++++++|+.+. ++.++||+|+|+-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~---~~~~~fDlIvsNP 214 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN---IEKQKFDFIVSNP 214 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh---CcCCCccEEEECC
Confidence 3468999999999999999876 56999999999999999987532 24789999997542 2356899999862
Q ss_pred h--------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHH
Q 043471 129 L--------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYS 184 (485)
Q Consensus 129 ~--------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (485)
. ..|-+. ..+..+++++.++|+|||.+++. ... ...+...
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~---------------~q~~~v~ 278 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF---------------KQEEAVT 278 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC---------------chHHHHH
Confidence 1 111110 12456788899999999999884 221 1455677
Q ss_pred HHhhhcceec------CCCCceeEEEeeeeecc-eEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHH
Q 043471 185 KVFKECQIQD------ASGNSFELSLVGYKCIG-AYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYER 257 (485)
Q Consensus 185 ~~~~~~~~~~------~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 257 (485)
+++.+.|+.. ..|.. ....+.-..+. .+.+...+. +.......+..++....-+.
T Consensus 279 ~~~~~~g~~~~~~~~D~~g~~-R~v~~~~~~~~rs~~rr~g~~---------~~~~q~~~~e~~~p~~~i~~-------- 340 (506)
T PRK01544 279 QIFLDHGYNIESVYKDLQGHS-RVILISPINLNRSYARRIGKS---------LSGVQQNLLDNELPKYLFSK-------- 340 (506)
T ss_pred HHHHhcCCCceEEEecCCCCc-eEEEeccccCCcceeccCCCC---------CCHHHHHHHHhhhhhhCCCH--------
Confidence 7777777632 22211 00000000000 000110000 00000000111111111000
Q ss_pred HhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEE
Q 043471 258 VFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEF 335 (485)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~ 335 (485)
+.+.-..+..+||||||.|.++..+|... ...++|+|++...+..+..+....+ .|+.+
T Consensus 341 -------------------eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~ 401 (506)
T PRK01544 341 -------------------EKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLL 401 (506)
T ss_pred -------------------HHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEE
Confidence 11212235689999999999999999986 6799999999998888777654322 37777
Q ss_pred EEccCCCC--CCCCCCccEEEEcccccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 336 EVADCTKK--TYPENSFDVIYSRDTILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 336 ~~~d~~~~--~~~~~~fD~i~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...|+..+ -++++++|.|+.++.=-|.+. .+.+++.+.++|||||.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 402 FPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 77776432 367789999999765544421 5678999999999999998874
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=168.08 Aligned_cols=162 Identities=22% Similarity=0.436 Sum_probs=129.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.++++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++++..+|+.+.+++++
T Consensus 34 ~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 34 RKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 3567788888889999999999999999999875 4699999999999999999875332 478999999998888888
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh------------HH----------HHHHhcC
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE------------FS----------EYIKQRG 406 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------------~~----------~~~~~~~ 406 (485)
+||+|++..+++|++++.++++++.++|+|||++++.+...+....... +. .......
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 193 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQEST 193 (231)
T ss_pred CccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988765432211000 00 0011112
Q ss_pred CCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 407 YDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 407 ~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
..+++.+++.++|+++||+++++....
T Consensus 194 ~~~~~~~~l~~~l~~aGf~~~~~~~~~ 220 (231)
T TIGR02752 194 RDFPGMDELAEMFQEAGFKDVEVKSYT 220 (231)
T ss_pred HHcCCHHHHHHHHHHcCCCeeEEEEcc
Confidence 246788999999999999998876544
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-20 Score=175.58 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=119.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ...++++.++|++++++++++||+|++.+++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 35679999999999999999876 78999999999999999987642 2347899999999888778899999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCC------CChhHHHHHHhcC---CCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT------PSVEFSEYIKQRG---YDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+|++|+..+++++.++|||||.+++++....... ............. ..+++++++.++|+++||+++++.
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999999999999987543210 0000111111111 146789999999999999998775
Q ss_pred ec
Q 043471 431 DR 432 (485)
Q Consensus 431 ~~ 432 (485)
-.
T Consensus 289 G~ 290 (322)
T PLN02396 289 GF 290 (322)
T ss_pred ee
Confidence 43
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=169.57 Aligned_cols=161 Identities=24% Similarity=0.390 Sum_probs=129.3
Q ss_pred CCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 33 SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
...++...+....+++.+...++.+|||||||+|..+..+++. +.+|+|+|+|++|++.|+++....+++.+..+|+..
T Consensus 31 ~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~ 110 (263)
T PTZ00098 31 DYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILK 110 (263)
T ss_pred CCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCccc
Confidence 4445555567788999999899999999999999999999875 779999999999999999987655689999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSK 185 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 185 (485)
.++++++||+|++..+++|++..+...++++++++|||||.+++.++.......... ........+++.|..
T Consensus 111 --~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 111 --KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGD 188 (263)
T ss_pred --CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 667789999999999999998555889999999999999999998875433211110 011223347889999
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
+++++||..+
T Consensus 189 ~l~~aGF~~v 198 (263)
T PTZ00098 189 LIKSCNFQNV 198 (263)
T ss_pred HHHHCCCCee
Confidence 9999999553
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-19 Score=158.13 Aligned_cols=156 Identities=26% Similarity=0.395 Sum_probs=128.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-------CEEEEEeCCHHHHHHHHHHhc--CCCC--CeEEEEccCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-------VHVVGIDLSINMISFALERAI--GLKC--SVEFEVADCT 341 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~g~D~s~~~~~~a~~~~~--~~~~--~i~~~~~d~~ 341 (485)
...+..+....++++||++||||.++..+.+..+ .+|+.+|+||.|++.++++.. ++.. .+.++.+|++
T Consensus 90 d~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 90 DMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE 169 (296)
T ss_pred HHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence 3567778888899999999999999998888652 689999999999999999874 3333 4899999999
Q ss_pred CCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH-HH------------------
Q 043471 342 KKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE-YI------------------ 402 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~------------------ 402 (485)
++||++.+||..++.+.+....++++++++++|+|||||++.+.++...+..+..++.. +.
T Consensus 170 ~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sY 249 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSY 249 (296)
T ss_pred cCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999988776433222111 11
Q ss_pred ---HhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 403 ---KQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 403 ---~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
...-..+++.+++..+.+++||..+.
T Consensus 250 qYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 250 QYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11112567889999999999999875
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=173.24 Aligned_cols=177 Identities=17% Similarity=0.168 Sum_probs=131.5
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSV 88 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~ 88 (485)
.-+++|+..+..|...... ........+++.+++.+...++.+|||+|||+|.++..++++ + .+|+|+|+|++|
T Consensus 34 ~v~~~f~~~A~~YD~~~~~---~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~m 110 (261)
T PLN02233 34 ERQALFNRIAPVYDNLNDL---LSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQ 110 (261)
T ss_pred HHHHHHHHhhhHHHHhhhh---hcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHH
Confidence 4577888877776632211 111223345556666777778899999999999999999886 3 489999999999
Q ss_pred HHHHHHHcC-----CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 89 IKKNEEVNG-----HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 89 ~~~a~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
++.|+++.. ...+++++++|+.+ +|+++++||+|+++.+++|+++ ...++++++|+|||||++++.+....
T Consensus 111 l~~A~~r~~~~~~~~~~~i~~~~~d~~~--lp~~~~sfD~V~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~ 186 (261)
T PLN02233 111 LAVAASRQELKAKSCYKNIEWIEGDATD--LPFDDCYFDAITMGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKS 186 (261)
T ss_pred HHHHHHHhhhhhhccCCCeEEEEccccc--CCCCCCCEeEEEEecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCC
Confidence 999987642 12479999999988 6788999999999999999987 66999999999999999999887643
Q ss_pred CCCcccc--------------C--CC-C---------CCCCChhHHHHHhhhcceecC
Q 043471 164 QSGDSKR--------------K--HN-P---------THYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 164 ~~~~~~~--------------~--~~-~---------~~~~~~~~~~~~~~~~~~~~~ 195 (485)
....... . .. . ..+.+++.+.++++++||...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~ 244 (261)
T PLN02233 187 TQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSA 244 (261)
T ss_pred CcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEE
Confidence 3211000 0 00 0 123477788889999998654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-20 Score=163.49 Aligned_cols=150 Identities=25% Similarity=0.345 Sum_probs=118.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
-+|.+|||||||.|.++..+|+. |++|+|+|+|+.+++.|+.+....+..+++.....+++....++||+|+|.++++|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 37889999999999999999988 89999999999999999998876666777888888887655589999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh--HHHHH---HhcCC----CCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE--FSEYI---KQRGY----DLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~---~~~~~----~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
++|+..+++.+.+++||||.+++++.+......... ..+++ .|.+. .+.-++++...+..+|+.+.+....
T Consensus 137 v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 137 VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecce
Confidence 999999999999999999999999887543211100 01111 11121 2345678888888889988766443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-19 Score=167.62 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=126.0
Q ss_pred HHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..+++.+.+ .++.+|||||||+|.++..+++.. +.+++++|+|+.|++.|+++.. ..++++..+|+.++++++++|
T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~--~~~i~~i~gD~e~lp~~~~sF 179 (340)
T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP--LKECKIIEGDAEDLPFPTDYA 179 (340)
T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh--ccCCeEEeccHHhCCCCCCce
Confidence 345565544 467899999999999999888875 4699999999999999998754 236889999999999888999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+|++..+++|++++..++++++++|||||++++.+..... .+...........+.+.+++.++|+++||+.+.++
T Consensus 180 DvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~----~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 180 DRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT----FWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred eEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc----hhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999999999887543221 11111111111234678999999999999999998
Q ss_pred ecchHHH
Q 043471 431 DRTEQFV 437 (485)
Q Consensus 431 ~~~~~~~ 437 (485)
+....+.
T Consensus 256 ~i~~~~~ 262 (340)
T PLN02490 256 RIGPKWY 262 (340)
T ss_pred EcChhhc
Confidence 8776543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.8e-19 Score=169.22 Aligned_cols=161 Identities=24% Similarity=0.287 Sum_probs=123.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..++..+...++.+|||||||+|.++..++......|+|+|+|+.++..++.. ..+...++.+..+|+.++|+ +++|
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F 190 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF 190 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence 34455665556789999999999999999987444799999999999765443 22234579999999999987 7889
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHH-hcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIK-QRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|+|+|..+++|..++..+|++++++|+|||.+++.++........ .....+.. +..+..++...+.++|+++||+++
T Consensus 191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceE
Confidence 999999999999999999999999999999999986543322111 11111211 112235689999999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
.+.+.+.
T Consensus 271 ~~~~~~~ 277 (322)
T PRK15068 271 RIVDVSV 277 (322)
T ss_pred EEEeCCC
Confidence 8877654
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=175.25 Aligned_cols=149 Identities=19% Similarity=0.253 Sum_probs=116.8
Q ss_pred hHHHhccCCC-----CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 43 RPEVLSLLPP-----YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 43 ~~~~~~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
...+++.+.. .++.+|||||||+|.++..|+++ +.+|+|+|+|+.|++.|+++... .++++++++|+.+
T Consensus 102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~-- 179 (340)
T PLN02244 102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN-- 179 (340)
T ss_pred HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc--
Confidence 3445666655 67889999999999999999987 78999999999999999886532 2479999999988
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------------cCCCCCCCC
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKHNPTHYR 178 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~ 178 (485)
+++++++||+|++..+++|+++ ...++++++++|||||.+++.++......... .......+.
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~ 257 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWC 257 (340)
T ss_pred CCCCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCC
Confidence 6778899999999999999998 56999999999999999999876532111000 011112234
Q ss_pred ChhHHHHHhhhcceecC
Q 043471 179 EPRFYSKVFKECQIQDA 195 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (485)
+.+.+..+++++||..+
T Consensus 258 s~~~~~~~l~~aGf~~v 274 (340)
T PLN02244 258 STSDYVKLAESLGLQDI 274 (340)
T ss_pred CHHHHHHHHHHCCCCee
Confidence 67889999999998553
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=166.47 Aligned_cols=157 Identities=21% Similarity=0.218 Sum_probs=121.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC-CCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT-YPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~-~~~~ 348 (485)
...+++.+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++... ...+++++++|+.+++ ++++
T Consensus 34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 456777775 45679999999999999999987 78999999999999999998764 3457899999987763 5568
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC-------ChhHHHHHH---hc---CCCCCCHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-------SVEFSEYIK---QR---GYDLHDVKSY 415 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-------~~~~~~~~~---~~---~~~~~~~~~~ 415 (485)
+||+|++..+++|+.++..+++++.++|||||++++..++...... ......... .. .....+++++
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l 191 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQV 191 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHH
Confidence 9999999999999999999999999999999999988655321100 000000000 00 0124678999
Q ss_pred HHHHHhCCCeEEEEe
Q 043471 416 GQMLKDAGFVDIIAE 430 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~ 430 (485)
.++|+++||+++...
T Consensus 192 ~~~l~~aGf~~~~~~ 206 (255)
T PRK11036 192 YQWLEEAGWQIMGKT 206 (255)
T ss_pred HHHHHHCCCeEeeee
Confidence 999999999998554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=164.13 Aligned_cols=161 Identities=19% Similarity=0.240 Sum_probs=120.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..++..+...++++|||||||+|.++..++......|+|+|+|+.|+..++.. ......++.+..+++.+++.. .+|
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~F 189 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAF 189 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCc
Confidence 34666666677899999999999999888877434799999999999765432 222234678888888888754 589
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHH-hcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIK-QRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|+|+|..+++|.+++..+|++++++|||||.+++.+......... .....+.. ...+..++...+..+|+++||+.+
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V 269 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENF 269 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEE
Confidence 999999999999999999999999999999999986543221110 01111111 122346789999999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
++.+...
T Consensus 270 ~i~~~~~ 276 (314)
T TIGR00452 270 RILDVLK 276 (314)
T ss_pred EEEeccC
Confidence 8876544
|
Known examples to date are restricted to the proteobacteria. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-20 Score=159.71 Aligned_cols=137 Identities=33% Similarity=0.557 Sum_probs=108.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
..++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|+|+.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK---------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH---------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh---------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 567889999999999999999776 7799999999999988 134455554445555678999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH--HHHh--cCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE--YIKQ--RGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
|++|+..+++++.++|||||+++++++...... ...+.. +... .+..+++.+++.++++++||++++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDDPS-PRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHH-HHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcchh-hhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999999987653210 001111 1111 234678999999999999999875
|
... |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=162.28 Aligned_cols=152 Identities=23% Similarity=0.392 Sum_probs=119.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
....++..+.+.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.|+++.. ++.+..+|+..+. ++++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~-~~~~ 93 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQ-PPQA 93 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccC-CCCC
Confidence 46678888888889999999999999999999876 5799999999999999998853 6889999998764 4568
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---------hHHHHHHhcC---CCCCCHHHHHH
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---------EFSEYIKQRG---YDLHDVKSYGQ 417 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---------~~~~~~~~~~---~~~~~~~~~~~ 417 (485)
||+|+++.+++|++++..++++++++|||||.++++........... .+.......+ ..+.+...+.+
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 173 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYD 173 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHH
Confidence 99999999999999999999999999999999999743221111100 1111111111 24467788999
Q ss_pred HHHhCCCeEE
Q 043471 418 MLKDAGFVDI 427 (485)
Q Consensus 418 ~l~~aGf~~~ 427 (485)
++..+|+.+.
T Consensus 174 ~l~~~g~~v~ 183 (258)
T PRK01683 174 ALAPAACRVD 183 (258)
T ss_pred HHHhCCCcee
Confidence 9999998763
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-19 Score=168.87 Aligned_cols=139 Identities=13% Similarity=0.216 Sum_probs=111.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
.++.+|||||||+|.++..|++.|.+|+|||+|+++++.|+++... ..+++++++|+++ +++++++||+|+|..+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~--l~~~~~~FD~Vi~~~v 207 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEK--LADEGRKFDAVLSLEV 207 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHH--hhhccCCCCEEEEhhH
Confidence 4677999999999999999999899999999999999999976532 2379999999987 5567789999999999
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC-------------ccccCCC-CCCCCChhHHHHHhhhcceecC
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG-------------DSKRKHN-PTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
++|+++ ...+++++.++|||||.+++++.+..... ....... ...+.+++.+...++++||...
T Consensus 208 LeHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~ 285 (322)
T PLN02396 208 IEHVAN--PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVK 285 (322)
T ss_pred HHhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEE
Confidence 999998 56999999999999999999876532110 0001111 1123478999999999998543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-19 Score=139.05 Aligned_cols=94 Identities=32% Similarity=0.551 Sum_probs=83.1
Q ss_pred EEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHH
Q 043471 59 LEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~ 137 (485)
||+|||+|..+..|+++ +.+|+|+|+|+++++.++++... .++++.++|+++ +++++++||+|++..+++|+++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~--l~~~~~sfD~v~~~~~~~~~~~-- 75 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAED--LPFPDNSFDVVFSNSVLHHLED-- 75 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTS--SSS-TT-EEEEEEESHGGGSSH--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHh--CccccccccccccccceeeccC--
Confidence 89999999999999999 88999999999999999998764 467799999998 6789999999999999999966
Q ss_pred HHHHHHHHHhhcccCcEEEE
Q 043471 138 VEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 138 ~~~~l~~~~~~L~pgG~l~~ 157 (485)
..++++++.|+|||||+++|
T Consensus 76 ~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 76 PEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHcCcCeEEeC
Confidence 77999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=161.31 Aligned_cols=154 Identities=33% Similarity=0.429 Sum_probs=121.8
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEE
Q 043471 279 LDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++++.+|||+|||+|..+..+++..+ .+|+|+|+|+.|++.|+++....+ .++++..+|+.++++++++||+|++
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence 3567899999999999998887776653 479999999999999999875433 3789999999999888889999999
Q ss_pred cccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH--HHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 356 RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE--YIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
+.+++|.++...++++++++|||||++++.++......+...... .+........+..++.++|+++||..+.+...
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEEec
Confidence 999999999999999999999999999999876544332221111 11111123457889999999999999877543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=154.75 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=105.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.+++.+...++.+|||+|||+|..+..|+++|.+|+|+|+|++|++.+++.... ..++++.++|+.+. ++ +++|
T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~--~~-~~~f 96 (197)
T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL--TF-DGEY 96 (197)
T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC--Cc-CCCc
Confidence 4566666666778999999999999999999999999999999999999876543 24688999998874 33 3679
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE-EeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF-RESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
|+|+|+.++||+++.....+++++.++|+|||++++ ........ . ....+.+....+.+...++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~--~~~~~~~~~~~~el~~~~~ 161 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-P--CTVGFPFAFKEGELRRYYE 161 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-C--CCCCCCCccCHHHHHHHhC
Confidence 999999999999876788999999999999999655 33322211 1 1112233345666776665
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=158.67 Aligned_cols=106 Identities=23% Similarity=0.273 Sum_probs=93.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
.+|.+|||||||-|.++..+|+.|++|+|+|+|+++++.|+.+....+ ++++.+..+++ +....++||+|+|..+++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~ed--l~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVED--LASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHH--HHhcCCCccEEEEhhHHH
Confidence 578999999999999999999999999999999999999998765433 56788888887 433448999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+++ .+.+++.|.+++||||.+++++++.
T Consensus 136 Hv~d--p~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 136 HVPD--PESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccCC--HHHHHHHHHHHcCCCcEEEEecccc
Confidence 9999 4589999999999999999998763
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=157.95 Aligned_cols=161 Identities=30% Similarity=0.442 Sum_probs=128.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+.+.++.+|||+|||+|.++..+++.+ +.+++|+|+|+.+++.++++......++.+...|+...++++++
T Consensus 8 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 87 (241)
T PRK08317 8 RARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS 87 (241)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence 3456778888899999999999999999999876 36999999999999999988555556899999999988888889
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCC----CCChhH---HHHHHhcCCCCCCHHHHHHHHHhC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG----TPSVEF---SEYIKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~a 422 (485)
||+|++..+++|++++..+++++.++|||||.+++.++..... ...... ...+........+...+.++|+++
T Consensus 88 ~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 167 (241)
T PRK08317 88 FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLFREA 167 (241)
T ss_pred ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987542211 111111 122222223445567899999999
Q ss_pred CCeEEEEeec
Q 043471 423 GFVDIIAEDR 432 (485)
Q Consensus 423 Gf~~~~~~~~ 432 (485)
||+++.++..
T Consensus 168 Gf~~~~~~~~ 177 (241)
T PRK08317 168 GLTDIEVEPY 177 (241)
T ss_pred CCCceeEEEE
Confidence 9998766544
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=160.55 Aligned_cols=158 Identities=18% Similarity=0.287 Sum_probs=125.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.....+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.|++.|+++.. ...++++|+..+|+++++
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~~~~~~~~~~ 103 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA----ADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCcccCcCCCCc
Confidence 34556777776666789999999999999998876 6899999999999999998753 356889999999988899
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH-----hcCCCCCCHHHHHHHHHhCCC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK-----QRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aGf 424 (485)
||+|+++.++++.+++..+++++.++|||||.++++.+..... ..+...+. +....+.+.+++.+++...|+
T Consensus 104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~---~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 180 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL---PELHQAWQAVDERPHANRFLPPDAIEQALNGWRY 180 (251)
T ss_pred EEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch---HHHHHHHHHhccCCccccCCCHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999997654321 12222211 223467789999999999998
Q ss_pred eEEEEeecchHH
Q 043471 425 VDIIAEDRTEQF 436 (485)
Q Consensus 425 ~~~~~~~~~~~~ 436 (485)
+. ..+..+..|
T Consensus 181 ~~-~~~~~~~~f 191 (251)
T PRK10258 181 QH-HIQPITLWF 191 (251)
T ss_pred ee-eeeEEEEEC
Confidence 64 444444433
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.6e-19 Score=137.61 Aligned_cols=95 Identities=36% Similarity=0.653 Sum_probs=84.5
Q ss_pred EEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccCCHHH
Q 043471 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPA 367 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~ 367 (485)
||+|||+|..+..++++.+.+++|+|+++.+++.++++... .++.+..+|+.++|+++++||+|++..+++|++++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~--~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~ 78 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN--EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEA 78 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT--STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc--cCchheeehHHhCccccccccccccccceeeccCHHH
Confidence 89999999999999988567999999999999999998763 3566999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcEEEE
Q 043471 368 LFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 368 ~l~~~~~~LkpgG~l~i 384 (485)
+++++.|+|||||+++|
T Consensus 79 ~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 79 ALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHcCcCeEEeC
Confidence 99999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-18 Score=151.68 Aligned_cols=185 Identities=23% Similarity=0.327 Sum_probs=139.0
Q ss_pred hHHHHHHHHhhhcCcCcchhhhhcC-CCcCccChhhhHHHhccCCCC------CCCcEEEEcCCCCcchHHH-HhhcCcE
Q 043471 8 GEREIQKNYWMEHSANLTVEAMMLD-SKASDLDKEERPEVLSLLPPY------EGKTVLEFGAGIGRFTGEL-AKKAGHV 79 (485)
Q Consensus 8 ~~~~~~~~yw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l-~~~~~~v 79 (485)
.-+..++.||++.++ +.+.|+.. ..-+..+-...+.+|..+... ...+.||+|||.|+.+..| .+...+|
T Consensus 4 ~~y~~a~~YW~~v~a--tvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~V 81 (218)
T PF05891_consen 4 IWYEKAKEYWENVPA--TVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEV 81 (218)
T ss_dssp HHHHHHHHHHHTS-S--SHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEE
T ss_pred cHHHHHHHHHcCCCC--CccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEe
Confidence 346788999998666 67788854 233334445667788877654 3468999999999999866 4557799
Q ss_pred EEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 80 IALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 80 ~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..+|.++.+++.|++.... ....++.+..+.++ ..+.++||+|++.+++.|++|....++|++|...|+|||.|++
T Consensus 82 DlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f--~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 82 DLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF--TPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp EEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc--cCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 9999999999999988765 23468888888884 3346799999999999999999999999999999999999999
Q ss_pred EeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 158 RESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.+..........+..+....++.+.++++|+++|+..+.
T Consensus 160 KEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 160 KENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred EecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 998876665566777888888999999999999995433
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=146.02 Aligned_cols=189 Identities=23% Similarity=0.388 Sum_probs=143.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
+.+..++..+.+.+..+|.|+|||+|..+..|++++ ++.++|+|-|++|++.|++++. +++|..+|+.+.. +..
T Consensus 17 RPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp----~~~f~~aDl~~w~-p~~ 91 (257)
T COG4106 17 RPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP----DATFEEADLRTWK-PEQ 91 (257)
T ss_pred CcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC----CCceecccHhhcC-CCC
Confidence 456789999999989999999999999999999998 7899999999999999998875 7899999999875 467
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh---------HHHHHHhc---CCCCCCHHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE---------FSEYIKQR---GYDLHDVKSYG 416 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------~~~~~~~~---~~~~~~~~~~~ 416 (485)
++|+++++.+|++++|..++|.++...|.|||.+.++.+.......... +...+... .....++..+.
T Consensus 92 ~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy 171 (257)
T COG4106 92 PTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYY 171 (257)
T ss_pred ccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHH
Confidence 8999999999999999999999999999999999999665544333221 22222221 23567899999
Q ss_pred HHHHhCCCeEEEEeecchH----------HHH--HHHHHHHHH-HhcHHHHHHHhhhhhh
Q 043471 417 QMLKDAGFVDIIAEDRTEQ----------FVQ--VLQRELDAI-EKDKDAFIKDFSEVFC 463 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~~~~~----------~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~ 463 (485)
++|...+-++-..+..=.| |.+ .|+.+++.+ ++.+..|++.|.+...
T Consensus 172 ~lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~ 231 (257)
T COG4106 172 ELLAPLACRVDIWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLA 231 (257)
T ss_pred HHhCcccceeeeeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHH
Confidence 9999998776554432221 111 233344444 5556666666655443
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=149.81 Aligned_cols=147 Identities=20% Similarity=0.273 Sum_probs=113.3
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.|++.++++....+ .++++...|+.+.+++ ++||+
T Consensus 21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 98 (197)
T PRK11207 21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-GEYDF 98 (197)
T ss_pred HHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-CCcCE
Confidence 5556666667789999999999999999988 7899999999999999998775433 3588888999887764 67999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+++.+++|++ +...+++++.++|||||.+++.........+.. .......+.+++.+.++ ||+++..+
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-------~~~~~~~~~~el~~~~~--~~~~~~~~ 169 (197)
T PRK11207 99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-------VGFPFAFKEGELRRYYE--GWEMVKYN 169 (197)
T ss_pred EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-------CCCCCccCHHHHHHHhC--CCeEEEee
Confidence 99999998875 578999999999999999766543322211100 00112357888888887 89988775
Q ss_pred e
Q 043471 431 D 431 (485)
Q Consensus 431 ~ 431 (485)
+
T Consensus 170 ~ 170 (197)
T PRK11207 170 E 170 (197)
T ss_pred C
Confidence 4
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=160.12 Aligned_cols=148 Identities=20% Similarity=0.260 Sum_probs=115.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+++.++ .++.+|||+|||+|.++..|++.+.+|+|+|+|++|++.|+++.... ++++++++|+.++. ++++++
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~ 112 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETP 112 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCC
Confidence 45666666 45679999999999999999999999999999999999999876432 47899999998742 245689
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC--------------Cc----cccCCCCCCCCChhH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS--------------GD----SKRKHNPTHYREPRF 182 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--------------~~----~~~~~~~~~~~~~~~ 182 (485)
||+|++..+++|+++ ...+++++.++|||||++++...+.... .. ......+.+..+++.
T Consensus 113 fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 190 (255)
T PRK11036 113 VDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQ 190 (255)
T ss_pred CCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHH
Confidence 999999999999987 4589999999999999999876553210 00 001112334457889
Q ss_pred HHHHhhhcceecC
Q 043471 183 YSKVFKECQIQDA 195 (485)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (485)
+.++++++||...
T Consensus 191 l~~~l~~aGf~~~ 203 (255)
T PRK11036 191 VYQWLEEAGWQIM 203 (255)
T ss_pred HHHHHHHCCCeEe
Confidence 9999999999654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9e-19 Score=154.66 Aligned_cols=144 Identities=26% Similarity=0.367 Sum_probs=112.7
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC---CCC----CeEEEEccCCCCCCCCCCccEEEEc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG---LKC----SVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~---~~~----~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
|++|||+|||+|-++..|++. |+.|+|+|+++.|++.|++.... +.. ++++.+.+++... +.||.|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999976 89999999999999999998542 122 3566667776653 559999999
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC--ChhHHHH---HHhcC----CCCCCHHHHHHHHHhCCCeEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP--SVEFSEY---IKQRG----YDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--~~~~~~~---~~~~~----~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++++|+.|++.++..+.++|||||++++++..+.-... .-.+.++ +-|.| ..+.++.++...++++|+++.
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~ 245 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVN 245 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchh
Confidence 99999999999999999999999999999877643211 1111222 22222 246789999999999999887
Q ss_pred EEee
Q 043471 428 IAED 431 (485)
Q Consensus 428 ~~~~ 431 (485)
.+..
T Consensus 246 ~v~G 249 (282)
T KOG1270|consen 246 DVVG 249 (282)
T ss_pred hhhc
Confidence 6644
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=155.80 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=104.1
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
..+.+++++..++|++|||||||+|.+++++|+. +.+|+|+++|+++.+.+++++... .+++++..|..++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---- 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---- 135 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----
Confidence 4456788999999999999999999999999998 799999999999999999965432 38999999988843
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.||.|+|.++++|++..+...+++.+.++|+|||.+++..+...
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~ 180 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGP 180 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCC
Confidence 459999999999999998899999999999999999999877644
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.4e-18 Score=150.20 Aligned_cols=141 Identities=16% Similarity=0.196 Sum_probs=104.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+.+++.+...++.+|||+|||+|.++.+|+++|.+|+|+|+|+.|++.++++....+ ++++..+|+... ++ +++||
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~-~~~fD 96 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA--AL-NEDYD 96 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc--cc-cCCCC
Confidence 455666666667899999999999999999999999999999999999887653222 477778887653 33 35899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+|+++.+++|++.+....++++++++|+|||++++.+...... ........+..+++.+...|..
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~--~~~~~~~~~~~~~~el~~~f~~ 161 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTAD--YPCHMPFSFTFKEDELRQYYAD 161 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCC--CCCCCCcCccCCHHHHHHHhCC
Confidence 9999999999987668899999999999999966643322111 1111112234467777777763
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=148.44 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=107.5
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--------------CCCCeEEEE
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--------------HFENVKFMC 106 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--------------~~~~~~~~~ 106 (485)
+....++..+...++.+|||+|||.|+.+.+||++|.+|+|+|+|+.+++.+.+..+ ...++++++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 100 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFC 100 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEE
Confidence 344445544444567899999999999999999999999999999999998654322 123689999
Q ss_pred eeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 107 ADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 107 ~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
+|+.+++.. ..+.||.|+...+++|++.+.+..+++.+.++|+|||.+++........ ....+.+..+++.+.+.
T Consensus 101 ~D~~~~~~~-~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~----~~~gpp~~~~~~eL~~~ 175 (213)
T TIGR03840 101 GDFFALTAA-DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQS----EMAGPPFSVSPAEVEAL 175 (213)
T ss_pred ccCCCCCcc-cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCC----CCCCcCCCCCHHHHHHH
Confidence 999884321 1357999999999999998889999999999999999866654433211 11223444577778887
Q ss_pred hhh
Q 043471 187 FKE 189 (485)
Q Consensus 187 ~~~ 189 (485)
|..
T Consensus 176 f~~ 178 (213)
T TIGR03840 176 YGG 178 (213)
T ss_pred hcC
Confidence 763
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-18 Score=157.24 Aligned_cols=145 Identities=19% Similarity=0.293 Sum_probs=115.9
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDS 87 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~ 87 (485)
+.-+.+|+..+..|...... ........+++.+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|++
T Consensus 5 ~~~~~~f~~~a~~yd~~~~~---~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~ 81 (231)
T TIGR02752 5 ERVHKVFEKIYKKYDRMNSV---ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSEN 81 (231)
T ss_pred HHHHHHHHHhhhHHhHHHHH---hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHH
Confidence 44566677766666542211 223345567788899998888999999999999999999876 358999999999
Q ss_pred HHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 88 VIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 88 ~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++.|+++... .++++++++|+.. +++++++||+|++..+++|+++ ..++++++.++|+|||.+++.+...
T Consensus 82 ~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 82 MLSVGRQKVKDAGLHNVELVHGNAME--LPFDDNSFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred HHHHHHHHHHhcCCCceEEEEechhc--CCCCCCCccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 99999987532 3479999999987 5567889999999999999988 5689999999999999999876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-18 Score=146.87 Aligned_cols=140 Identities=22% Similarity=0.284 Sum_probs=100.2
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.+++.+...++.++||+|||.|+.+++||++|.+|+++|+|+..++.+++.....+ .++..+.|+.+.. + ++.||+
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~--~-~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFD--F-PEEYDF 97 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcc--c-cCCcCE
Confidence 34445555667899999999999999999999999999999999998777653322 5999999998844 3 368999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
|++..+++|+..+.++++++.+...++|||++++....... .......+.+...++.++.++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~--d~p~~~~~~f~~~~~EL~~~y~d 161 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETP--DYPCPSPFPFLLKPGELREYYAD 161 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--S--SS--SS--S--B-TTHHHHHTTT
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccC--CCCCCCCCCcccCHHHHHHHhCC
Confidence 99999999999888999999999999999998885433221 11222233444466777777764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-17 Score=153.50 Aligned_cols=145 Identities=19% Similarity=0.326 Sum_probs=111.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhc---CCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADK---FDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
+.++.+|||+|||+|..+..+++. .+.+++|+|+|+.|++.|++++... ..+++++++|+.+.+++ .+|+|++
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~ 131 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVL 131 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence 457789999999999999888873 2679999999999999999998643 34799999999988754 5999999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-----HHHHHHh----------------cCCCCCCH
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIKQ----------------RGYDLHDV 412 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~----------------~~~~~~~~ 412 (485)
+.+++|++ ++..++++++++|||||.+++.+........... +..+... ......+.
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~ 211 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 211 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence 99999995 3568999999999999999999855433221111 1111100 11234578
Q ss_pred HHHHHHHHhCCCeEE
Q 043471 413 KSYGQMLKDAGFVDI 427 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~ 427 (485)
++..++|+++||+.+
T Consensus 212 ~~~~~~L~~aGF~~v 226 (247)
T PRK15451 212 ETHKARLHKAGFEHS 226 (247)
T ss_pred HHHHHHHHHcCchhH
Confidence 899999999999754
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=147.49 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=114.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.++++....+.++.+...|+...+++ ++||+
T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~ 97 (195)
T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALN-EDYDF 97 (195)
T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcccc-CCCCE
Confidence 45556666556679999999999999999987 78999999999999999887754444577778888766654 67999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+++.+++|++ +...++++++++|||||++++.++......+... + .....+.+++.+++. +|+++...
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~------~-~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM------P-FSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC------C-cCccCCHHHHHHHhC--CCeEEEee
Confidence 99999999884 5678999999999999997766544332211110 1 112467899999886 59998876
Q ss_pred ecc
Q 043471 431 DRT 433 (485)
Q Consensus 431 ~~~ 433 (485)
...
T Consensus 169 e~~ 171 (195)
T TIGR00477 169 EAV 171 (195)
T ss_pred ccc
Confidence 543
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-17 Score=150.85 Aligned_cols=163 Identities=27% Similarity=0.479 Sum_probs=128.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~ 346 (485)
....++..+...++.+|||+|||+|.++..+++..+ .+++++|+++.+++.+++++.. ...++.+..+|+.+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 39 WRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence 345566667667788999999999999999998863 7999999999999999998754 345789999999988877
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH----------------------HHh
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY----------------------IKQ 404 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----------------------~~~ 404 (485)
.++||+|++..++++..++..+++++.++|+|||.+++.+............... ..+
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE 198 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence 7899999999999999999999999999999999999887654332211110000 000
Q ss_pred cCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 405 RGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 405 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
....+++.+++.++|+++||+++.+....
T Consensus 199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 227 (239)
T PRK00216 199 SIRAFPDQEELAAMLEEAGFERVRYRNLT 227 (239)
T ss_pred HHHhCCCHHHHHHHHHhCCCceeeeeeee
Confidence 01235678899999999999998887644
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-18 Score=156.88 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=110.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+++.+...++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|+++ +++++++|+.+ ++ ++++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~--~~-~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRD--WK-PKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhh--CC-CCCCc
Confidence 56788888888899999999999999999988 67999999999999999873 68899999987 43 56799
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc------------ccc------CCCCCCCCChhHH
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD------------SKR------KHNPTHYREPRFY 183 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------------~~~------~~~~~~~~~~~~~ 183 (485)
|+|+|+.++||+++ ..+++++++++|||||.+++..+....... ... ........+++.+
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999999999987 569999999999999999996432111000 000 0011233478889
Q ss_pred HHHhhhccee
Q 043471 184 SKVFKECQIQ 193 (485)
Q Consensus 184 ~~~~~~~~~~ 193 (485)
...++++||.
T Consensus 169 ~~~l~~aGf~ 178 (255)
T PRK14103 169 AELLTDAGCK 178 (255)
T ss_pred HHHHHhCCCe
Confidence 9999999985
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-18 Score=136.93 Aligned_cols=103 Identities=26% Similarity=0.468 Sum_probs=86.7
Q ss_pred CCCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeec-cCCCCCCCCCCeeEEEhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEVN---GHFENVKFMCADV-TSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~-~~~~~~~~~~~~D~v~~~ 127 (485)
++.+|||||||+|.++..+++ .+.+|+|+|+|+++++.|+++. ...++++++++|+ .... ..+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD---FLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT---TSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc---cCCCCCEEEEC
Confidence 578999999999999999999 5889999999999999999987 3446999999999 3322 24579999999
Q ss_pred h-hhhccC-hHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 128 W-LLMYLS-DKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 128 ~-~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+ +++++. .++..++++++.+.|+|||++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8 555443 3457899999999999999999964
|
... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-18 Score=158.03 Aligned_cols=118 Identities=19% Similarity=0.392 Sum_probs=102.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
++......+++.++..++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.|+++.. ...++++|++. ++++
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~--~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA---ADHYLAGDIES--LPLA 100 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCCEEEcCccc--CcCC
Confidence 455666777888877677899999999999999999889999999999999999998753 45789999988 6677
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++||+|+++.+++|+++ ...++.++.++|+|||.++++....
T Consensus 101 ~~~fD~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 101 TATFDLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CCcEEEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 889999999999999988 6699999999999999999986653
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=158.28 Aligned_cols=147 Identities=14% Similarity=0.154 Sum_probs=111.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHH---HcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE---VNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..+...++++|||||||+|.++..++..|+ .|+|+|+|+.|+..++. ......++.+..+++.+ ++. .+
T Consensus 111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~--lp~-~~ 187 (314)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ--LHE-LY 187 (314)
T ss_pred HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH--CCC-CC
Confidence 3566777778899999999999999999988876 69999999999876433 22333578889999887 443 35
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc--------ccCCCCCCCCChhHHHHHhhhcc
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS--------KRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+||+|+|+++++|.++ ...++++++++|+|||.+++.+......... .+....+...+...+..+++++|
T Consensus 188 ~FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aG 265 (314)
T TIGR00452 188 AFDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVG 265 (314)
T ss_pred CcCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCC
Confidence 8999999999999988 5689999999999999999976543321110 01112234447788999999999
Q ss_pred eecC
Q 043471 192 IQDA 195 (485)
Q Consensus 192 ~~~~ 195 (485)
|+.+
T Consensus 266 F~~V 269 (314)
T TIGR00452 266 FENF 269 (314)
T ss_pred CeEE
Confidence 9654
|
Known examples to date are restricted to the proteobacteria. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=159.82 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=113.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..++..++.+|||||||+|.++..+++.|. .|+|+|+|+.++..++.. .....++.++.+|+++ +++ ++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~--lp~-~~ 188 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ--LPA-LK 188 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH--CCC-cC
Confidence 4556677777889999999999999999999876 599999999998765432 2223589999999988 555 68
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc----c----cCCCCCCCCChhHHHHHhhhcc
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS----K----RKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+||+|+|.++++|..+ ...+++++++.|+|||.+++.+......... . .........+.+.+..+++++|
T Consensus 189 ~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aG 266 (322)
T PRK15068 189 AFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAG 266 (322)
T ss_pred CcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcC
Confidence 9999999999999987 5689999999999999999976543322110 0 1111223447788999999999
Q ss_pred eecC
Q 043471 192 IQDA 195 (485)
Q Consensus 192 ~~~~ 195 (485)
|+.+
T Consensus 267 F~~i 270 (322)
T PRK15068 267 FKDV 270 (322)
T ss_pred CceE
Confidence 9654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.2e-18 Score=157.56 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=93.6
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
....+++.+..++|.+|||||||.|.++.+++++ |++|+|+.+|++.++.+++++... .++++..+|..+++
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---- 125 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---- 125 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC----
Confidence 3456789999999999999999999999999998 999999999999999999876543 37999999998733
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+||.|+|..+++|++.++++.+++++.++|+|||.+++..++..
T Consensus 126 -~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 126 -GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred -CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 499999999999999887799999999999999999999766643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=146.67 Aligned_cols=162 Identities=27% Similarity=0.435 Sum_probs=126.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+...++.+|||+|||+|.++..+++... .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~ 106 (223)
T TIGR01934 28 RRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALPFEDNS 106 (223)
T ss_pred HHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCCCCCCc
Confidence 34566666666888999999999999999998864 599999999999999999875 445789999999998877789
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH----HH------------------HHHhcCC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF----SE------------------YIKQRGY 407 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----~~------------------~~~~~~~ 407 (485)
||+|++..+++|.+++..+++++.++|+|||++++.+............ .. +......
T Consensus 107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (223)
T TIGR01934 107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIR 186 (223)
T ss_pred EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999987654332111100 00 0000011
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
.+.+..+|.++|+++||+++.++....
T Consensus 187 ~~~~~~~~~~~l~~aGf~~~~~~~~~~ 213 (223)
T TIGR01934 187 AFPSQEELAAMLKEAGFEEVRYRSLTF 213 (223)
T ss_pred hCCCHHHHHHHHHHcCCccceeeeeec
Confidence 345788999999999999988766543
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-18 Score=145.89 Aligned_cols=132 Identities=27% Similarity=0.409 Sum_probs=103.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
..++.+|||||||+|.++..+++.+.+|+|+|+|+.+++. .++.....+... .+.++++||+|+|+.+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------RNVVFDNFDAQD--PPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------TTSEEEEEECHT--HHCHSSSEEEEEEESSGG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------hhhhhhhhhhhh--hhccccchhhHhhHHHHh
Confidence 5678899999999999999998889999999999999988 234455544443 445678999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC-------CccccC-CCCCCCCChhHHHHHhhhcceecC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS-------GDSKRK-HNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
|+++ ...+++++.++|||||+++++++..... ...... .....+.+.+.++.+++++||...
T Consensus 90 ~~~d--~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPD--PEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSH--HHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hccc--HHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9998 6799999999999999999998865310 001111 123345588999999999999653
|
... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=145.33 Aligned_cols=128 Identities=20% Similarity=0.282 Sum_probs=110.1
Q ss_pred hcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--c------CcEEEEeCChHHHHHHHHHcCC---
Q 043471 30 MLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--A------GHVIALDFIDSVIKKNEEVNGH--- 98 (485)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~------~~v~giD~s~~~~~~a~~~~~~--- 98 (485)
|+|...-..+.-|...+...+.+.++.++||++||||.++..+.+. . .+|+.+|+||+|++.++++...
T Consensus 76 mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l 155 (296)
T KOG1540|consen 76 MNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL 155 (296)
T ss_pred HHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC
Confidence 4444555566667778889999999999999999999999888875 2 5899999999999999998732
Q ss_pred C--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 99 F--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 99 ~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
. +.+.++.+|+++ +||++++||..++.+.+..+++ +++.+++++|+|||||++.+.+..
T Consensus 156 ~~~~~~~w~~~dAE~--LpFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 156 KASSRVEWVEGDAED--LPFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CcCCceEEEeCCccc--CCCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEcc
Confidence 1 259999999999 8899999999999999999999 779999999999999999887664
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.74 E-value=5e-17 Score=150.64 Aligned_cols=145 Identities=19% Similarity=0.347 Sum_probs=112.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++.+|||+|||+|..+..+++++ +++++|+|+|+.|++.|++++... ..+++++++|+.+.+++ .+|+|++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~ 128 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVIL 128 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEee
Confidence 3577899999999999999998863 679999999999999999987643 34789999999988764 5899999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-HH----HHHHh----------------cCCCCCCH
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-FS----EYIKQ----------------RGYDLHDV 412 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~~----~~~~~----------------~~~~~~~~ 412 (485)
..+++|++ ++..++++++++|||||.+++.+........... +. .+... ......+.
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~ 208 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSI 208 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCH
Confidence 99999985 4678999999999999999999865433221111 10 01000 12246789
Q ss_pred HHHHHHHHhCCCeEE
Q 043471 413 KSYGQMLKDAGFVDI 427 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~ 427 (485)
+++.++|+++||+.+
T Consensus 209 ~~~~~~l~~aGF~~~ 223 (239)
T TIGR00740 209 ETHKARLKNVGFSHV 223 (239)
T ss_pred HHHHHHHHHcCCchH
Confidence 999999999999854
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-17 Score=142.67 Aligned_cols=137 Identities=23% Similarity=0.356 Sum_probs=102.8
Q ss_pred HHHhc-cCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLS-LLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..++. .++...-.++||+|||+|.++..|+.+...++++|+|+.+++.|+++....++|+++++|+... .|.++||
T Consensus 32 ~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~---~P~~~FD 108 (201)
T PF05401_consen 32 RATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEF---WPEGRFD 108 (201)
T ss_dssp HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------SS-EE
T ss_pred HHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC---CCCCCee
Confidence 34554 5777777899999999999999999999999999999999999999999888999999999764 3679999
Q ss_pred EEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 123 MMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 123 ~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+|+++.+++|+.+ ++...++..+...|+|||.+++.+.... .-...+ +....+.+..+|.+
T Consensus 109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-----~c~~wg-h~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-----NCRRWG-HAAGAETVLEMLQE 170 (201)
T ss_dssp EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-----HHHHTT--S--HHHHHHHHHH
T ss_pred EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-----cccccC-cccchHHHHHHHHH
Confidence 9999999999975 5688999999999999999999765311 111111 22266777777765
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=167.57 Aligned_cols=150 Identities=25% Similarity=0.385 Sum_probs=119.5
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+.+++.+...++.+|||||||+|..+..|++. +.+|+|+|+|+++++.|+++.... .+++|+++|+.. .+++++
T Consensus 254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~--~~~~~~ 331 (475)
T PLN02336 254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTK--KTYPDN 331 (475)
T ss_pred HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCccc--CCCCCC
Confidence 4566777777777889999999999999999886 789999999999999998875432 379999999987 556778
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-----CCCCCCCCChhHHHHHhhhcceec
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-----KHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+||+|+|..+++|+++ ...++++++++|+|||.+++.++.......... ........+.+.+.+.++++||..
T Consensus 332 ~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~ 409 (475)
T PLN02336 332 SFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDD 409 (475)
T ss_pred CEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCee
Confidence 9999999999999998 569999999999999999998876432211110 011233457788999999999855
Q ss_pred C
Q 043471 195 A 195 (485)
Q Consensus 195 ~ 195 (485)
.
T Consensus 410 i 410 (475)
T PLN02336 410 V 410 (475)
T ss_pred e
Confidence 3
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=143.96 Aligned_cols=140 Identities=15% Similarity=0.154 Sum_probs=104.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--------------CCCeEEEEeecc
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--------------FENVKFMCADVT 110 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~~d~~ 110 (485)
..+..+...++.+|||+|||.|..+.+||++|++|+|+|+|+.+++.+.+..+. ..++++.++|+.
T Consensus 28 ~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 28 KYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred HHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECccc
Confidence 333334445678999999999999999999999999999999999987543221 247899999998
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
++.. ...+.||.|+...+++|++.+.+.++++.+.++|+|||++++........ ....|.+..+++.+.+.++.
T Consensus 108 ~l~~-~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~----~~~gPp~~~~~~el~~~~~~ 181 (218)
T PRK13255 108 ALTA-ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE----ELAGPPFSVSDEEVEALYAG 181 (218)
T ss_pred CCCc-ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc----cCCCCCCCCCHHHHHHHhcC
Confidence 8431 12368999999999999998889999999999999999755432222211 11223345577888888864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-16 Score=163.99 Aligned_cols=138 Identities=20% Similarity=0.231 Sum_probs=100.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCCC-C
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG--LK-CSVEFEVADCTKKT-Y 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~~-~ 345 (485)
..+.++..+ .++.+|||+|||+|.++..++.. |+ +|+++|+|+.+++.|++++.. +. .+++++++|+.+.. -
T Consensus 528 ~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 528 PTRRMIGQM--AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE 604 (702)
T ss_pred HHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH
Confidence 344455544 24789999999999999999987 54 799999999999999999863 33 46899999976531 1
Q ss_pred CCCCccEEEEcccc-----------cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 346 PENSFDVIYSRDTI-----------LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 346 ~~~~fD~i~~~~~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
..++||+|++.... ....+...++..+.++|+|||.++++.... ..+ .
T Consensus 605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-------------------~~~--~ 663 (702)
T PRK11783 605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-------------------GFK--M 663 (702)
T ss_pred cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-------------------cCC--h
Confidence 14689999996432 112345678899999999999998874211 011 1
Q ss_pred HHHHHHhCCCeEEEEeec
Q 043471 415 YGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~~~~ 432 (485)
..+.+.++|+.+..++..
T Consensus 664 ~~~~~~~~g~~~~~i~~~ 681 (702)
T PRK11783 664 DEEGLAKLGLKAEEITAK 681 (702)
T ss_pred hHHHHHhCCCeEEEEecC
Confidence 267788899988777643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-17 Score=134.96 Aligned_cols=103 Identities=32% Similarity=0.595 Sum_probs=87.7
Q ss_pred CCCEEEEECCCCChhHHHHhhc-CCCEEEEEeCCHHHHHHHHHHh--cCCCCCeEEEEccC-CCCCCCCCCccEEEEcc-
Q 043471 283 PGQKVLDVGCGIGGGDFYMADK-FDVHVVGIDLSINMISFALERA--IGLKCSVEFEVADC-TKKTYPENSFDVIYSRD- 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g~D~s~~~~~~a~~~~--~~~~~~i~~~~~d~-~~~~~~~~~fD~i~~~~- 357 (485)
|+.+|||||||+|.++..+++. .+.+++|+|+|+.+++.|+++. .+...+++++++|+ ..... .++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 5789999999999999999994 3889999999999999999998 45667999999999 33333 46799999999
Q ss_pred ccccc---CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILHI---QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+++++ ++..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 456889999999999999999975
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=157.08 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=116.6
Q ss_pred cChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
+....+..+++.+.. .++.+|||||||+|.++..+++. +.+|+|+|+|++|++.|+++.. ..+++++.+|+.+ +
T Consensus 96 ~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~--l 172 (340)
T PLN02490 96 WTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAED--L 172 (340)
T ss_pred chHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHh--C
Confidence 445566667776654 35789999999999999988876 4689999999999999998754 2578999999988 6
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC-CCC-CCCCChhHHHHHhhhcce
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-HNP-THYREPRFYSKVFKECQI 192 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 192 (485)
++++++||+|+++.+++|+++ ....+++++++|+|||.+++.+..... ....+. ... ....+.+.+.++++++||
T Consensus 173 p~~~~sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~-~~~~r~~~~~~~~~~t~eEl~~lL~~aGF 249 (340)
T PLN02490 173 PFPTDYADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPT-FWLSRFFADVWMLFPKEEEYIEWFTKAGF 249 (340)
T ss_pred CCCCCceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcc-hhHHHHhhhhhccCCCHHHHHHHHHHCCC
Confidence 677889999999999999988 458999999999999999886543211 111110 000 112467889999999999
Q ss_pred ecCC
Q 043471 193 QDAS 196 (485)
Q Consensus 193 ~~~~ 196 (485)
....
T Consensus 250 ~~V~ 253 (340)
T PLN02490 250 KDVK 253 (340)
T ss_pred eEEE
Confidence 6543
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=147.06 Aligned_cols=90 Identities=23% Similarity=0.329 Sum_probs=82.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++.+|||+|||||.++..+++..+.+|+|+|+|++|++.|+++. .++++|++++|+++++||+|++..+++|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~lp~~d~sfD~v~~~~~l~~~ 123 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD-------DKVVGSFEALPFRDKSFDVVMSSFALHAS 123 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc-------ceEEechhhCCCCCCCEEEEEecChhhcc
Confidence 46799999999999999999876579999999999999998752 35789999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCC
Q 043471 363 QDKPALFKSFFKWLKPG 379 (485)
Q Consensus 363 ~~~~~~l~~~~~~Lkpg 379 (485)
+|+++++++++|+|||.
T Consensus 124 ~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 DNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCHHHHHHHHHHHhcCc
Confidence 99999999999999994
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-18 Score=148.91 Aligned_cols=101 Identities=20% Similarity=0.293 Sum_probs=87.9
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC--------CeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE--------NVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
|.+|||+|||+|.++..||+.|++|+|||++++|++.|++.....| ++++...+++... +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----cccceeee
Confidence 5789999999999999999999999999999999999999844322 3667777777632 56999999
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+.+++|+.+ .+.++..+.+.|||||.+++++.+.
T Consensus 165 sevleHV~d--p~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKD--PQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhC--HHHHHHHHHHHhCCCCceEeeehhh
Confidence 999999998 6699999999999999999987653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=140.65 Aligned_cols=106 Identities=34% Similarity=0.599 Sum_probs=93.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~ 356 (485)
+++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|++++...+ .++++.++|+.+++ ++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 457899999999999999999543 6799999999999999999876333 27999999999976 55 789999999
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+++|+.++..+++++.++|+|||.+++.+..
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999776
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-16 Score=146.91 Aligned_cols=142 Identities=25% Similarity=0.373 Sum_probs=116.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
..+.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. .++.++.+|+.+.++++++||+|++..+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 334799999999999999999875 4679999999999999998764 378899999999988889999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+.++..+++++.++|+|||.+++..+.... ...+.......+..+.+.+++.++++++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGT---LHELRQSFGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccC---HHHHHHHHHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 9999999999999999999999998654432 1222222332445678899999999998 8876554
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=140.38 Aligned_cols=106 Identities=25% Similarity=0.492 Sum_probs=90.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..|++. +.+|+|+|+|++|++.|+++.. ..++++|+++|+.+++..++ ++||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEc
Confidence 45789999999999999999953 6799999999999999999643 33489999999998431134 899999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+++|+++ ...+++++.++|+|||.+++.+..
T Consensus 81 ~~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPD--PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccC--HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999998 569999999999999999998775
|
... |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=143.04 Aligned_cols=101 Identities=16% Similarity=0.308 Sum_probs=87.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.++.+|||||||+|..+..|++. +.+|+|+|+|++|++.|+++. +++.+.++|+.+ ++++++||+|+++.++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~---~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD---PFKDNFFDLVLTKGVL 115 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC---CCCCCCEEEEEECChh
Confidence 35678999999999999999887 679999999999999999865 467888999875 4578899999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+|++++...++++++.+++ ++++++.+..
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~ 144 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYY 144 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEee
Confidence 9998777889999999998 5788887764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=131.49 Aligned_cols=94 Identities=31% Similarity=0.527 Sum_probs=81.0
Q ss_pred EEEEcCCCCcchHHHHhhc-----CcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhh-hhh
Q 043471 58 VLEFGAGIGRFTGELAKKA-----GHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSN-WLL 130 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~-~~~ 130 (485)
|||+|||+|..+..+++.. .+++|+|+|++|++.++++.... .+++++++|+.+ +++.+++||+|+++ .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~--l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARD--LPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTC--HHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhH--CcccCCCeeEEEEcCCcc
Confidence 7999999999999999874 79999999999999999986432 389999999988 66778899999995 559
Q ss_pred hccChHHHHHHHHHHHhhcccCc
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGG 153 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG 153 (485)
+|++++...++++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999889999999999999998
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=151.00 Aligned_cols=137 Identities=17% Similarity=0.226 Sum_probs=102.9
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
..+...++.+|||+|||+|..+.+|+++|.+|+|+|+|+.+++.++++....+ ++++...|+.... + +++||+|++
T Consensus 114 ~~~~~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~--~-~~~fD~I~~ 190 (287)
T PRK12335 114 EAVQTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS--I-QEEYDFILS 190 (287)
T ss_pred HHhhccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc--c-cCCccEEEE
Confidence 33333455699999999999999999999999999999999999988754322 7888888887643 2 578999999
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+.+++|++.+....+++++.++|+|||++++......... .......+...++.++++++.
T Consensus 191 ~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~--~~~~p~~~~~~~~el~~~~~~ 251 (287)
T PRK12335 191 TVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY--PCPMPFSFTFKEGELKDYYQD 251 (287)
T ss_pred cchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccC--CCCCCCCcccCHHHHHHHhCC
Confidence 9999999877788999999999999999766432211111 011111333467777777764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-16 Score=148.78 Aligned_cols=140 Identities=19% Similarity=0.262 Sum_probs=109.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....+.++++...|+...++ +++||+|+++.+++|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc-cCCccEEEEcchhhhC
Confidence 3459999999999999999987 7899999999999999998877555578888889877655 6789999999999998
Q ss_pred C--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 363 Q--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 363 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+ +...+++++.++|+|||++++.........+.. .+ .....+..++.+.++. |+++...+..
T Consensus 198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~------~p-~~~~~~~~el~~~~~~--~~i~~~~e~~ 261 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP------MP-FSFTFKEGELKDYYQD--WEIVKYNENV 261 (287)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC------CC-CCcccCHHHHHHHhCC--CEEEEEeccc
Confidence 5 678899999999999999777644332221110 01 1134678899998865 9998875433
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=147.50 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=90.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++... ..+++++++|+.+ +++ +.+|+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~--~~~--~~~D~vv 130 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD--IAI--ENASMVV 130 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh--CCC--CCCCEEe
Confidence 46789999999999999888873 57999999999999999998643 2379999999987 433 3599999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++.+++|+++.....++++++++|+|||.+++.+..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 999999998776789999999999999999998754
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=133.16 Aligned_cols=146 Identities=22% Similarity=0.248 Sum_probs=111.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-CCCeE-EEEccCCCCC-CCCCCccEEEEcccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-KCSVE-FEVADCTKKT-YPENSFDVIYSRDTI 359 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~-~~~~d~~~~~-~~~~~fD~i~~~~~~ 359 (485)
....|||+|||||..-.++-..-+++|+++|+++.|-+.+.+.++.. ..++. |++++.+++| ++++++|.|++..++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 34478999999998776665444789999999999999998887643 35677 9999999998 889999999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh-hHHHHHHh------cCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV-EFSEYIKQ------RGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+.+.|+.+.|+++.|+|||||++++.+....+-..-. -++....+ .| ...+. +..+.|+++-|+.+...
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dG-C~ltr-d~~e~Leda~f~~~~~k 231 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDG-CVLTR-DTGELLEDAEFSIDSCK 231 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccc-eEEeh-hHHHHhhhcccccchhh
Confidence 9999999999999999999999999987665432211 11222222 11 11233 45578888888876543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-16 Score=147.60 Aligned_cols=106 Identities=16% Similarity=0.275 Sum_probs=90.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.++.+|||||||+|..+..++++ +.+|+|+|+|++|++.|+++... ..+++++++|+.+. ++ ..+|+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~--~~--~~~d~v~ 127 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV--EI--KNASMVI 127 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC--CC--CCCCEEe
Confidence 46779999999999999999875 56899999999999999987543 23689999999884 33 3589999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++.+++|+++++...++++++++|+|||.+++++...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9999999987778899999999999999999987643
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=144.05 Aligned_cols=135 Identities=16% Similarity=0.227 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 56 KTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.+|||||||+|..+..+++. +.+|+|+|+|+++++.++++... .++++++.+|+... ++ .++||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~--~~-~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD--PF-PDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC--CC-CCCCCEeehHHHH
Confidence 37999999999999999987 36899999999999999987543 24789999998763 33 3589999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+|+++ ...+++++.++|+|||++++.++...............+..+...|.+.++++||...
T Consensus 78 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 78 HHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred HhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 99987 6799999999999999999987753221111112223335577889999999998553
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=143.28 Aligned_cols=162 Identities=22% Similarity=0.287 Sum_probs=119.2
Q ss_pred HHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCC
Q 043471 272 TKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 272 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 347 (485)
...+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++++.... .++.+.++|+...+
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 117 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--- 117 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---
Confidence 344555554 456889999999999999999987 6799999999999999999886433 47899999998765
Q ss_pred CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHh----cCCCCCCHHHHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQ----RGYDLHDVKSYGQMLK 420 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~l~ 420 (485)
++||+|++..+++|++ +...+++++.+++++++.+.+.... .... ...+...+.. ....+++.+++.++++
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT--AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG 195 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc--hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence 7899999999999885 4678899999999877666553211 0000 0011111110 1123468899999999
Q ss_pred hCCCeEEEEeecchHHHHH
Q 043471 421 DAGFVDIIAEDRTEQFVQV 439 (485)
Q Consensus 421 ~aGf~~~~~~~~~~~~~~~ 439 (485)
++||+++..+.....+...
T Consensus 196 ~~Gf~v~~~~~~~~~~~~~ 214 (219)
T TIGR02021 196 ELGWKIVREGLVSTGFYNS 214 (219)
T ss_pred HcCceeeeeecccccchhh
Confidence 9999999988776665544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=145.23 Aligned_cols=130 Identities=19% Similarity=0.269 Sum_probs=99.6
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCCh
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFID 86 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~ 86 (485)
.+.-++.|++.+..|.....+. ....+..+++.+++.+.. .++.+|||||||||.++..+++. +.+|+|+|+|+
T Consensus 8 ~~~v~~~f~~iA~~YD~~n~~~---s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~ 84 (226)
T PRK05785 8 WEELQEAYNKIPKAYDRANRFI---SFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE 84 (226)
T ss_pred HHHHHHHHHhhhHHHHHhhhhc---cCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCH
Confidence 3445667888777766433221 112233445555544321 23779999999999999999988 68999999999
Q ss_pred HHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccC
Q 043471 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG 152 (485)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg 152 (485)
+|++.|+++. .++++|++. +|+++++||+|+++.+++|+++ .++++++++|+|||.
T Consensus 85 ~Ml~~a~~~~------~~~~~d~~~--lp~~d~sfD~v~~~~~l~~~~d--~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 85 NMLKMNLVAD------DKVVGSFEA--LPFRDKSFDVVMSSFALHASDN--IEKVIAEFTRVSRKQ 140 (226)
T ss_pred HHHHHHHhcc------ceEEechhh--CCCCCCCEEEEEecChhhccCC--HHHHHHHHHHHhcCc
Confidence 9999998752 467899988 7788999999999999999988 669999999999994
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=145.71 Aligned_cols=155 Identities=23% Similarity=0.353 Sum_probs=119.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.++++.+|||||||+|.++..+++++ +.+++++|. +.+++.+++++. ++..+++++.+|+.+.+++
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-- 214 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-- 214 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC--
Confidence 4456677778888999999999999999999987 579999997 789999988876 3456799999999876654
Q ss_pred CccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHHHHHhcC-----CCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSEYIKQRG-----YDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~l 419 (485)
.+|+|++..++|+.++ ...++++++++|+|||++++.+......... ..+..+....+ ....+.+++.++|
T Consensus 215 ~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll 294 (306)
T TIGR02716 215 EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEIL 294 (306)
T ss_pred CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHHH
Confidence 3799999999988854 3578999999999999999998755433211 11222222111 1234578999999
Q ss_pred HhCCCeEEEE
Q 043471 420 KDAGFVDIIA 429 (485)
Q Consensus 420 ~~aGf~~~~~ 429 (485)
+++||+.+.+
T Consensus 295 ~~aGf~~v~~ 304 (306)
T TIGR02716 295 ESLGYKDVTM 304 (306)
T ss_pred HHcCCCeeEe
Confidence 9999998764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=136.38 Aligned_cols=109 Identities=25% Similarity=0.403 Sum_probs=99.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.++..++.....+|.|+|||+|..+..|+++ ++.++|+|.|++|++.|+++. ++++|..+|+.... ++...
T Consensus 20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~---p~~~~ 93 (257)
T COG4106 20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK---PEQPT 93 (257)
T ss_pred HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC---CCCcc
Confidence 57888889999999999999999999999998 789999999999999998886 68999999999854 67899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+++++.+++++++ ....+..+...|.|||.|.+.-+
T Consensus 94 dllfaNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmP 130 (257)
T COG4106 94 DLLFANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMP 130 (257)
T ss_pred chhhhhhhhhhccc--cHHHHHHHHHhhCCCceEEEECC
Confidence 99999999999998 67999999999999999999644
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=142.56 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=115.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHH---HHcCCCCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNE---EVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~---~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
.-...++...++..+|++|||||||+|+++..++++|+ .|+|+|.++-..-..+ +..+....+..+-..+++ ++
T Consensus 101 d~KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~--Lp 178 (315)
T PF08003_consen 101 DWKWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED--LP 178 (315)
T ss_pred cchHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh--cc
Confidence 34557788888888999999999999999999999987 5999999998776533 333322233444345666 55
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC--------ccccCCCCCCCCChhHHHHHh
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG--------DSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 187 (485)
. .+.||+|+|.++|+|..+ .-..|++++..|+|||.+++.+....... ...+..+.++..+...+..++
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl 255 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWL 255 (315)
T ss_pred c-cCCcCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHH
Confidence 4 689999999999999998 45999999999999999999765544322 122233445556888999999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||.++.
T Consensus 256 ~r~gF~~v~ 264 (315)
T PF08003_consen 256 ERAGFKDVR 264 (315)
T ss_pred HHcCCceEE
Confidence 999996644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=144.38 Aligned_cols=173 Identities=18% Similarity=0.351 Sum_probs=118.2
Q ss_pred EEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCc-hHHH-HHHH----HHcC
Q 043471 213 YVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGG-IETT-KEFV----AKLD 280 (485)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~-~~~~----~~~~ 280 (485)
.+...+......++...+....-..+..|+....... +..+++.+. ...|++... .+.+ ..++ +...
T Consensus 18 ~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~-~~~e~~~l~~~lti~~T~FfR~~~~~~~l~~~vlp~l~~~~~ 96 (264)
T smart00138 18 VLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHR-GEEELAELLDLMTTNETRFFRESKHFEALEEKVLPLLIASRR 96 (264)
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC-cHHHHHHHHHHhhcCCCcccCCcHHHHHHHHHHhHHHHHhcC
Confidence 3444455566667777776666666777777654432 112222222 234444332 2222 2222 2223
Q ss_pred CCCCCEEEEECCCCCh----hHHHHhhcC------CCEEEEEeCCHHHHHHHHHHhcC----------------------
Q 043471 281 LKPGQKVLDVGCGIGG----GDFYMADKF------DVHVVGIDLSINMISFALERAIG---------------------- 328 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~---------------------- 328 (485)
..++.+|||+|||+|. +++.+++.. +.+|+|+|+|+.|++.|++....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 455555532 36899999999999999985421
Q ss_pred ------CCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 329 ------LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 329 ------~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+|.|.+.|+.+.+++.++||+|+|.++++|++ +..+++++++++|+|||++++..
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 12368999999999887788999999999999996 45689999999999999999873
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=141.32 Aligned_cols=157 Identities=23% Similarity=0.298 Sum_probs=118.6
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-CCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-YPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 352 (485)
.+...+...++.+|||||||+|.++..+++. +.+++++|+++.+++.++++.......+++...+..+.+ ..+++||+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 117 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDV 117 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccE
Confidence 3334444567889999999999999988876 789999999999999999887654446788888877654 24578999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH--HHHHHh-------cCCCCCCHHHHHHHHHhCC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--SEYIKQ-------RGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~~~l~~aG 423 (485)
|++..+++|.+++..+++.+.++|+|||.+++..+........... ..+... ....+.+..++.++++++|
T Consensus 118 Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (233)
T PRK05134 118 VTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAG 197 (233)
T ss_pred EEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCC
Confidence 9999999999999999999999999999999986542211000000 001100 1124568899999999999
Q ss_pred CeEEEEee
Q 043471 424 FVDIIAED 431 (485)
Q Consensus 424 f~~~~~~~ 431 (485)
|+++....
T Consensus 198 f~~v~~~~ 205 (233)
T PRK05134 198 LEVQDITG 205 (233)
T ss_pred CeEeeeee
Confidence 99987754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=146.36 Aligned_cols=110 Identities=24% Similarity=0.386 Sum_probs=96.2
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+.++..+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. +++.++.+|+..+ . +++
T Consensus 19 ~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~--~-~~~ 92 (258)
T PRK01683 19 PARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASW--Q-PPQ 92 (258)
T ss_pred HHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhcc--C-CCC
Confidence 3457777888888899999999999999999987 579999999999999999875 5789999999763 2 456
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+||+|+++.+++|+++ ...+++++.++|+|||.+++..
T Consensus 93 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 93 ALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 9999999999999988 5699999999999999999964
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=138.63 Aligned_cols=160 Identities=23% Similarity=0.282 Sum_probs=115.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHH--HHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFAL--ERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~--~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+...+.--.|++|||||||.|..+..++.+....|+|+|+++...-+.+ +++.+....+.....-++++|. .++||
T Consensus 106 rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD 184 (315)
T PF08003_consen 106 RLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD 184 (315)
T ss_pred HHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence 34445533468899999999999999999884447999999987665533 2333333234444346677776 68999
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh--hHHHHHHh-cCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV--EFSEYIKQ-RGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+|+|.+|++|..++-..|++++..|+|||.+++.+..-....... .-..|.+. ..+..+|...+..+|+++||+.++
T Consensus 185 tVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 185 TVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred EEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 999999999999999999999999999999999876543322110 01112111 124567999999999999999998
Q ss_pred Eeecch
Q 043471 429 AEDRTE 434 (485)
Q Consensus 429 ~~~~~~ 434 (485)
+-+...
T Consensus 265 ~v~~~~ 270 (315)
T PF08003_consen 265 CVDVSP 270 (315)
T ss_pred EecCcc
Confidence 876553
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-15 Score=130.83 Aligned_cols=125 Identities=26% Similarity=0.258 Sum_probs=101.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
++++.+|||+|||+|..+..++... +.+|+|+|+|+.|++.|+++....+ .++++..+|+.+.+. .++||+|+++.
T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence 3458899999999999999888754 6799999999999999999886544 259999999988776 67999999975
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+.+.+.++++++++|||||++++.... .....+.++.+..|+.+..+..
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~ 169 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGR---------------------DPEEEIAELPKALGGKVEEVIE 169 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------ChHHHHHHHHHhcCceEeeeEE
Confidence 457889999999999999999988421 1234567777778988765543
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-16 Score=136.88 Aligned_cols=181 Identities=21% Similarity=0.285 Sum_probs=132.7
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc----CcEEEEeCCh
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA----GHVIALDFID 86 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~giD~s~ 86 (485)
.++++|||. .|.+++..|...+.|+..+ -+.++...... ..+|||||||.|.....+.+.. -.|+++|.||
T Consensus 33 ~~~~k~wD~---fy~~~~~rFfkdR~wL~~E-fpel~~~~~~~-~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361|consen 33 REASKYWDT---FYKIHENRFFKDRNWLLRE-FPELLPVDEKS-AETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred cchhhhhhh---hhhhccccccchhHHHHHh-hHHhhCccccC-hhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence 356889998 6667777665444443332 22222222222 2289999999999999998863 4799999999
Q ss_pred HHHHHHHHHcCCC-CCeEEEEeeccCCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 87 SVIKKNEEVNGHF-ENVKFMCADVTSPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 87 ~~~~~a~~~~~~~-~~~~~~~~d~~~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+++..++..... .++...+.|++... -++..+++|.|++.++|.-++++...++++++.++|||||.|++.|....
T Consensus 108 ~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 108 RAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred HHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9999999876533 36777888887654 34668899999999999999988899999999999999999999887653
Q ss_pred CCCc--------------cccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 164 QSGD--------------SKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 164 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.... ........++.+.+.+..+|.++||....
T Consensus 188 DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 188 DLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred hHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhc
Confidence 2110 01123334666889999999999996544
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=141.48 Aligned_cols=146 Identities=24% Similarity=0.340 Sum_probs=114.5
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCCh
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFID 86 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~ 86 (485)
.+..+.+|++.+..|...... .........+..++..+...++.+|||+|||+|..+..+++.+ .+|+|+|+++
T Consensus 10 ~~~~~~~~~~~~~~y~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~ 86 (239)
T PRK00216 10 QEKVAEMFDSIAPKYDLMNDL---LSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSE 86 (239)
T ss_pred hHHHHHHHHHhhhhHHHHHHH---HhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCH
Confidence 446678898877766421110 1112344556667777776678899999999999999998875 7999999999
Q ss_pred HHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 87 SVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 87 ~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.+++.++++... ..+++++.+|+.+ .++++++||+|+++.++++..+ ...+++++.++|+|||.+++.+...
T Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 87 GMLAVGREKLRDLGLSGNVEFVQGDAEA--LPFPDNSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred HHHHHHHHhhcccccccCeEEEeccccc--CCCCCCCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecC
Confidence 999999997643 2478999999987 4456789999999999999987 6699999999999999999876543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=152.00 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=94.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--CCCCCccEEEEc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--YPENSFDVIYSR 356 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~~~~~fD~i~~~ 356 (485)
...++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++....+.++.++++|+.+++ +++++||+|+++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 34467899999999999998888865 679999999999999999887655557888999998877 778899999999
Q ss_pred cccccc-------------CCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 357 DTILHI-------------QDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 357 ~~~~~~-------------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++|++ .+...++++++++|||||++++.+...
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 998865 246789999999999999999987543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=127.43 Aligned_cols=141 Identities=23% Similarity=0.378 Sum_probs=104.2
Q ss_pred HHHH-HcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVA-KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.++. .++-..-.++||+|||.|.++..|+.+. -+++++|+|+.+++.|++++.+.. +|++.+.|+.+. .|+++||+
T Consensus 33 ~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~-~V~~~~~dvp~~-~P~~~FDL 109 (201)
T PF05401_consen 33 ATLLAALPRRRYRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLP-HVEWIQADVPEF-WPEGRFDL 109 (201)
T ss_dssp HHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-S-SEEEEES-TTT----SS-EEE
T ss_pred HHHHHhcCccccceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCC-CeEEEECcCCCC-CCCCCeeE
Confidence 3443 4666666799999999999999999995 499999999999999999998764 899999999885 46799999
Q ss_pred EEEcccccccCC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 353 IYSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 353 i~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
|+++++++++.+ ...++..+...|+|||.+++..+.. ......| .....+.+.++|.+. |..++.
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd----------~~c~~wg-h~~ga~tv~~~~~~~-~~~~~~ 177 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD----------ANCRRWG-HAAGAETVLEMLQEH-LTEVER 177 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H----------HHHHHTT--S--HHHHHHHHHHH-SEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----------CcccccC-cccchHHHHHHHHHH-hhheeE
Confidence 999999999965 4568999999999999999986521 1222333 345788999999987 655543
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-16 Score=147.05 Aligned_cols=141 Identities=22% Similarity=0.317 Sum_probs=106.8
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
...++.+|||||||+|..+..+++. + .+|+|+|+|++|++.|+++... ..+++++.+|+.+ +++++++||+|+
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~--l~~~~~~fD~Vi 151 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEA--LPVADNSVDVII 151 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhh--CCCCCCceeEEE
Confidence 4567889999999999988877765 4 3699999999999999986432 2589999999987 566788999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc--c---C--CCCCCCCChhHHHHHhhhcceecC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK--R---K--HNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~---~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
++.+++|.++ ...++++++++|||||++++.+.......... . . .......+...+..+++++||...
T Consensus 152 ~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 152 SNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred EcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCce
Confidence 9999999987 56899999999999999999876543211000 0 0 001112356678888888888543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-16 Score=131.11 Aligned_cols=170 Identities=19% Similarity=0.294 Sum_probs=118.0
Q ss_pred CChhHHHHHHHHhhh-cCcCcchhhhhcCCCcCccChhhhHHHhc----cCC---CCCC-CcEEEEcCCCCcchHHHHhh
Q 043471 5 SNHGEREIQKNYWME-HSANLTVEAMMLDSKASDLDKEERPEVLS----LLP---PYEG-KTVLEFGAGIGRFTGELAKK 75 (485)
Q Consensus 5 ~~~~~~~~~~~yw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~-~~vLDiGcG~G~~~~~l~~~ 75 (485)
++.+|....|.|||+ ++....-...-.|+..-|.......++++ .+. ..+. .+|||+|||+|.+...|++.
T Consensus 9 dl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e 88 (227)
T KOG1271|consen 9 DLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE 88 (227)
T ss_pred cccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh
Confidence 488899999999998 33333222222344444554444444433 333 2233 39999999999999999998
Q ss_pred cC--cEEEEeCChHHHHHHHHHcC--CCCC-eEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc------ChHHHHHHHHH
Q 043471 76 AG--HVIALDFIDSVIKKNEEVNG--HFEN-VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL------SDKEVEKLAER 144 (485)
Q Consensus 76 ~~--~v~giD~s~~~~~~a~~~~~--~~~~-~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~------~~~~~~~~l~~ 144 (485)
|. ..+|+|+|+++++.|+..+. ..++ |+|.+.|+.+.+ +..++||+|.--+++--+ +...+.-++..
T Consensus 89 gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~ 166 (227)
T KOG1271|consen 89 GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDS 166 (227)
T ss_pred cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc--ccccceeEEeecCceeeeecCCCCcccceeeehhh
Confidence 64 58999999999999887543 2344 999999999853 456788888765544322 11223568888
Q ss_pred HHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 145 MVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 145 ~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+.++|+|||+++|...++ +...+...+++.+|
T Consensus 167 v~~ll~~~gifvItSCN~----------------T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 167 VEKLLSPGGIFVITSCNF----------------TKDELVEEFENFNF 198 (227)
T ss_pred HhhccCCCcEEEEEecCc----------------cHHHHHHHHhcCCe
Confidence 999999999999987765 45566777777665
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=131.84 Aligned_cols=147 Identities=22% Similarity=0.313 Sum_probs=104.8
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
.+++.+..-++.++||+|||.|+.+.+||++ |..|+++|+|+..++.+++.....+..++..+.|+.+..++ +.||+|
T Consensus 21 ~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~I 98 (192)
T PF03848_consen 21 EVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFP-EEYDFI 98 (192)
T ss_dssp HHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-T-TTEEEE
T ss_pred HHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhcccc-CCcCEE
Confidence 3455555556679999999999999999998 89999999999999998887765555799999999888765 689999
Q ss_pred EEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 354 YSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 354 ~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++..+++|++ ..+.+++.+...++|||++++......+..+.+. +.. ..+.+.++.+.+. |++++..++
T Consensus 99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~------~~~-f~~~~~EL~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS------PFP-FLLKPGELREYYA--DWEILKYNE 169 (192)
T ss_dssp EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--------S---B-TTHHHHHTT--TSEEEEEEE
T ss_pred EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC------CCC-cccCHHHHHHHhC--CCeEEEEEc
Confidence 9999999884 5678999999999999999887654433222110 001 1234566666665 688877543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-15 Score=131.39 Aligned_cols=152 Identities=14% Similarity=0.126 Sum_probs=113.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-------------CCCCeEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-------------LKCSVEF 335 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------~~~~i~~ 335 (485)
.+.+.++++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+.+++.+.+...- ...++++
T Consensus 20 ~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 20 NPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 345556666665567789999999999999999988 89999999999999986443210 1246899
Q ss_pred EEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCH
Q 043471 336 EVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDV 412 (485)
Q Consensus 336 ~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.++|+.+++.. .++||.|+...+++|++ .+..+++.+.++|||||++++..+........ .+ ....+.
T Consensus 99 ~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------gp--p~~~~~ 169 (213)
T TIGR03840 99 FCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------GP--PFSVSP 169 (213)
T ss_pred EEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------Cc--CCCCCH
Confidence 99999887642 46799999999999995 46779999999999999877775544321110 01 124678
Q ss_pred HHHHHHHHhCCCeEEEEee
Q 043471 413 KSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~ 431 (485)
+++.+++.. +|.+..++.
T Consensus 170 ~eL~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 170 AEVEALYGG-HYEIELLES 187 (213)
T ss_pred HHHHHHhcC-CceEEEEee
Confidence 899988864 576665544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=140.30 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=116.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHc-CCCCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVN-GHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~-~~~~~~~~~~~d~~~~~~~~ 116 (485)
..+..+++.+...++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++. ....++++..+|+.. .++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~ 83 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADG--LPF 83 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccccc--CCC
Confidence 455677888888889999999999999999998863 58999999999999998872 233589999999987 456
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------c----CC--CCCCCCChhHHH
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------R----KH--NPTHYREPRFYS 184 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~----~~--~~~~~~~~~~~~ 184 (485)
++++||+|++..+++|+++ ...+++++.++|+|||++++.++......... . .. ..........+.
T Consensus 84 ~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK08317 84 PDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLP 161 (241)
T ss_pred CCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 7789999999999999988 56899999999999999999875432110000 0 00 001111345678
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
..++++||....
T Consensus 162 ~~l~~aGf~~~~ 173 (241)
T PRK08317 162 GLFREAGLTDIE 173 (241)
T ss_pred HHHHHcCCCcee
Confidence 889999986544
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=138.96 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=113.0
Q ss_pred hhhHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~ 115 (485)
..+..+++.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|++|+..|+++.... .++.+.++|+.. ++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~ 117 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS--LC 117 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh--CC
Confidence 44556666666 456889999999999999999998889999999999999999876432 378999999877 32
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC------Cccc--cCCCCCCCCChhHHHHHh
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS------GDSK--RKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~ 187 (485)
++||+|++..+++|++.+....+++++.+++++++++.+........ .... ......+..+++.+..++
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 194 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERAL 194 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHH
Confidence 78999999999999987668899999999999877766532211000 0000 111223344788899999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||....
T Consensus 195 ~~~Gf~v~~ 203 (219)
T TIGR02021 195 GELGWKIVR 203 (219)
T ss_pred HHcCceeee
Confidence 999986544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=141.52 Aligned_cols=156 Identities=22% Similarity=0.218 Sum_probs=106.1
Q ss_pred HHHHHHHHcCC---CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEccCC
Q 043471 271 TTKEFVAKLDL---KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL------KCSVEFEVADCT 341 (485)
Q Consensus 271 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d~~ 341 (485)
..+.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.+...|+.
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 34445555432 25789999999999999999987 789999999999999999987532 235788888876
Q ss_pred CCCCCCCCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH---HHHHHh-c---CCCCCCH
Q 043471 342 KKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF---SEYIKQ-R---GYDLHDV 412 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~---~~~~~~-~---~~~~~~~ 412 (485)
.+ +++||+|+|..+++|+++ ...+++.+.+ +.+||. ++..... ......+ ...+.. . ...+++.
T Consensus 208 ~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~p~--~~~~~~l~~~g~~~~g~~~~~r~y~~s~ 280 (315)
T PLN02585 208 SL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFAPK--TLYYDILKRIGELFPGPSKATRAYLHAE 280 (315)
T ss_pred hc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeCCc--chHHHHHHHHHhhcCCCCcCceeeeCCH
Confidence 54 478999999999999865 3346666665 455554 4442111 1100101 111110 0 0124579
Q ss_pred HHHHHHHHhCCCeEEEEeecch
Q 043471 413 KSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
+++.++|+++||++...+....
T Consensus 281 eel~~lL~~AGf~v~~~~~~~~ 302 (315)
T PLN02585 281 ADVERALKKAGWKVARREMTAT 302 (315)
T ss_pred HHHHHHHHHCCCEEEEEEEeec
Confidence 9999999999999987665443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-15 Score=148.62 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=98.9
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++... .++++..+|... + +++|
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~-l~v~~~~~D~~~--l---~~~f 229 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG-LPVEIRLQDYRD--L---NGQF 229 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-CeEEEEECchhh--c---CCCC
Confidence 345677788888999999999999999999986 78999999999999999998753 257888888765 2 4789
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
|+|++..+++|++......+++++.++|||||++++.++...
T Consensus 230 D~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 230 DRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999999877788999999999999999999876543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.2e-15 Score=131.96 Aligned_cols=142 Identities=17% Similarity=0.302 Sum_probs=104.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC-C-CCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK-K-TYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~-~-~~~~~~fD~i~~~~~~ 359 (485)
+++.+|||+|||+|.++..+++..+..++|+|+|+.+++.++++ +++++++|+.+ + ++++++||+|+++.++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR------GVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc------CCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 46779999999999999999877677899999999999998753 46788888865 3 3667899999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCC-----------CCC-hhH-HHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG-----------TPS-VEF-SEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+|++++..+++++.|++++ ++++.+..... .+. ..+ ..+....+..+.+.+++.++++++||++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf~v 162 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNLRI 162 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCCEE
Confidence 9999999999999887664 34442211000 000 000 0000111234678999999999999999
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
+.....
T Consensus 163 ~~~~~~ 168 (194)
T TIGR02081 163 LDRAAF 168 (194)
T ss_pred EEEEEe
Confidence 876544
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-15 Score=135.21 Aligned_cols=150 Identities=25% Similarity=0.306 Sum_probs=114.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCC-CCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYP-ENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 360 (485)
.+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+. ++.+...|+.+.+.. .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 4679999999999999988876 66899999999999999998764443 588888888776543 37899999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH--HHHHH----h---cCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--SEYIK----Q---RGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~----~---~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
|+.++..+++++.++|+|||.+++.............. ..+.. . ....+.+..++.++++++||+++++..
T Consensus 124 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 124 HVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 99999999999999999999999886543211000000 00110 0 112356788999999999999998765
Q ss_pred cc
Q 043471 432 RT 433 (485)
Q Consensus 432 ~~ 433 (485)
..
T Consensus 204 ~~ 205 (224)
T TIGR01983 204 LV 205 (224)
T ss_pred EE
Confidence 43
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-15 Score=129.37 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=106.7
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
..+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+.++++..+|..+.+ .++||+|+++
T Consensus 13 ~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~fD~Vi~n 89 (179)
T TIGR00537 13 ANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV--RGKFDVILFN 89 (179)
T ss_pred HHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc--CCcccEEEEC
Confidence 3344445679999999999999999987 449999999999999999988655557888899987654 4589999999
Q ss_pred ccccccCC---------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHH
Q 043471 357 DTILHIQD---------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415 (485)
Q Consensus 357 ~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (485)
..+++.++ ...+++++.++|||||++++..... ....++
T Consensus 90 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~--------------------~~~~~~ 149 (179)
T TIGR00537 90 PPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL--------------------NGEPDT 149 (179)
T ss_pred CCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc--------------------CChHHH
Confidence 88876643 3567999999999999999885322 125678
Q ss_pred HHHHHhCCCeEEEEeecc
Q 043471 416 GQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~~~~ 433 (485)
.+.|++.||....+....
T Consensus 150 ~~~l~~~gf~~~~~~~~~ 167 (179)
T TIGR00537 150 FDKLDERGFRYEIVAERG 167 (179)
T ss_pred HHHHHhCCCeEEEEEEee
Confidence 899999999987776543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-16 Score=125.05 Aligned_cols=94 Identities=30% Similarity=0.567 Sum_probs=80.1
Q ss_pred EEEECCCCChhHHHHhhcC--C--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc-ccccc
Q 043471 287 VLDVGCGIGGGDFYMADKF--D--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR-DTILH 361 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~--~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~-~~~~~ 361 (485)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+.+++++++|+.++++.+++||+|++. .+++|
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999876 3 79999999999999999998654558999999999988878899999995 45999
Q ss_pred cC--CHHHHHHHHHhcCCCCc
Q 043471 362 IQ--DKPALFKSFFKWLKPGG 380 (485)
Q Consensus 362 ~~--~~~~~l~~~~~~LkpgG 380 (485)
+. +...+++++.++|||||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 85 57789999999999998
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-17 Score=128.29 Aligned_cols=95 Identities=23% Similarity=0.347 Sum_probs=62.8
Q ss_pred EEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC
Q 043471 59 LEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~ 134 (485)
||||||+|.++..+++. ..+++|+|+|+.|++.|+++..... +......+..+.......++||+|+++.++||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999988 7899999999999988887765433 3333333333321111236999999999999996
Q ss_pred hHHHHHHHHHHHhhcccCcEE
Q 043471 135 DKEVEKLAERMVKWLKVGGYI 155 (485)
Q Consensus 135 ~~~~~~~l~~~~~~L~pgG~l 155 (485)
+ .+.++++++++|+|||.|
T Consensus 81 ~--~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred h--HHHHHHHHHHHcCCCCCC
Confidence 6 779999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-17 Score=127.36 Aligned_cols=95 Identities=31% Similarity=0.517 Sum_probs=64.5
Q ss_pred EEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcccccccC
Q 043471 288 LDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~~~~~ 363 (485)
||||||+|.++..+++.. ..+++|+|+|+.|++.|++++.... .+......+..+.. ...++||+|++..+++|++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 799999999999998885 5699999999999988888776544 23333333333321 1225999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcEE
Q 043471 364 DKPALFKSFFKWLKPGGTV 382 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l 382 (485)
++..++++++++|||||++
T Consensus 81 ~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -HHHHHHHHTTT-TSS-EE
T ss_pred hHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-15 Score=140.21 Aligned_cols=107 Identities=22% Similarity=0.311 Sum_probs=87.9
Q ss_pred CCCCCcEEEEcCCCCc----chHHHHhh-------cCcEEEEeCChHHHHHHHHHcCC----------------------
Q 043471 52 PYEGKTVLEFGAGIGR----FTGELAKK-------AGHVIALDFIDSVIKKNEEVNGH---------------------- 98 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~----~~~~l~~~-------~~~v~giD~s~~~~~~a~~~~~~---------------------- 98 (485)
..++.+|+|+|||+|. ++..+++. +.+|+|+|+|+.|++.|++....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456799999999996 45555554 25799999999999999985310
Q ss_pred -------CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 99 -------FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 99 -------~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
-.+++|.++|+.+ .+++.++||+|+|.++++|++++...+++++++++|+|||++++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~--~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLA--ESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCC--CCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0268999999988 44467899999999999999987788999999999999999999644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=127.83 Aligned_cols=153 Identities=14% Similarity=0.130 Sum_probs=112.9
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-------------CCCCeEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-------------LKCSVEF 335 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------~~~~i~~ 335 (485)
.+.+.+.+..+.+.++.+|||+|||.|..+..|+++ |.+|+|+|+|+.+++.+.+...- ...++++
T Consensus 23 ~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 23 NPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred CHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 355566666666667789999999999999999987 89999999999999987432210 1346889
Q ss_pred EEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCH
Q 043471 336 EVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDV 412 (485)
Q Consensus 336 ~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
.++|+.+++.. ...||+|+...+++|++ .+..+++.+.++|+|||++++......+.... ......+.
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~---------gPp~~~~~ 172 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA---------GPPFSVSD 172 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC---------CCCCCCCH
Confidence 99999887533 25899999999999995 57789999999999999765543333221110 00124688
Q ss_pred HHHHHHHHhCCCeEEEEeec
Q 043471 413 KSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~ 432 (485)
+++.+++.. +|++..++..
T Consensus 173 ~el~~~~~~-~~~i~~~~~~ 191 (218)
T PRK13255 173 EEVEALYAG-CFEIELLERQ 191 (218)
T ss_pred HHHHHHhcC-CceEEEeeec
Confidence 999998853 3777766543
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-15 Score=140.34 Aligned_cols=115 Identities=29% Similarity=0.483 Sum_probs=96.2
Q ss_pred hhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 42 ERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 42 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
....+++.+.. ..+.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.++++.. +++.++.+|+.. .++
T Consensus 19 ~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~--~~~ 94 (240)
T TIGR02072 19 MAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEK--LPL 94 (240)
T ss_pred HHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhh--CCC
Confidence 33444444442 345789999999999999999885 468999999999999998875 488999999988 556
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++++||+|+++.+++|+.+ ...+++++.++|+|||.+++.++..
T Consensus 95 ~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 95 EDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred CCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 7889999999999999987 5689999999999999999986543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.4e-15 Score=127.56 Aligned_cols=124 Identities=21% Similarity=0.304 Sum_probs=96.3
Q ss_pred EEEeCCHHHHHHHHHHhc--C--CCCCeEEEEccCCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 310 VGIDLSINMISFALERAI--G--LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 310 ~g~D~s~~~~~~a~~~~~--~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+|+|+|++|++.|+++.. . ...+++++++|+.++|+++++||+|++..++++++|+..++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 489999999999987654 1 124699999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCCChhHH---------------------HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 386 DYCKSFGTPSVEFS---------------------EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 386 ~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
++..........+. .+....-..+.+.+++.++|+++||+.+.....+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~ 149 (160)
T PLN02232 81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEIS 149 (160)
T ss_pred ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECc
Confidence 88754321110000 0110000145789999999999999988766544
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.9e-15 Score=136.41 Aligned_cols=170 Identities=14% Similarity=0.183 Sum_probs=120.5
Q ss_pred HHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHH
Q 043471 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNE 93 (485)
Q Consensus 14 ~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~ 93 (485)
..||+.+......+.+ .+.....+...+...++.+|||||||+|.++..+++.+.+|+++|+++.++..++
T Consensus 17 ~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~ 87 (233)
T PRK05134 17 ARWWDPNGEFKPLHRI---------NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVAR 87 (233)
T ss_pred HHHhccCCCcHHHHHh---------hHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 5588775543333222 2333445555555667889999999999999999988899999999999999998
Q ss_pred HHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc----
Q 043471 94 EVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS---- 168 (485)
Q Consensus 94 ~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~---- 168 (485)
++.... .++++..+++.... ....++||+|+++.+++|.++ ...+++.+.++|+|||.+++..+........
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~ 164 (233)
T PRK05134 88 LHALESGLKIDYRQTTAEELA-AEHPGQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIV 164 (233)
T ss_pred HHHHHcCCceEEEecCHHHhh-hhcCCCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHh
Confidence 865322 25788888887632 124579999999999999988 5689999999999999999976542111000
Q ss_pred ----------ccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 169 ----------KRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 169 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
........+.+.+.+..++.++||...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 165 GAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 000011123366778899999998654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.5e-15 Score=136.91 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=105.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
..++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++... .++++...+...++.++++||+|++
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--CCCeEEEEecccccccCCCccEEEE
Confidence 3566799999999999988887532 35999999999999999887542 2466777777667667789999999
Q ss_pred cccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH--H------HHHh----cCCCCCCHHHHHHHHHh
Q 043471 356 RDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS--E------YIKQ----RGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 356 ~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~------~~~~----~~~~~~~~~~~~~~l~~ 421 (485)
+.++||+++. ..+++++.|+++ |.+++.+............. . +... .....++.+++.+++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~ 213 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ 213 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC
Confidence 9999999874 579999999998 66777766544211000000 0 0000 01246789999999999
Q ss_pred CCCeEEEEe
Q 043471 422 AGFVDIIAE 430 (485)
Q Consensus 422 aGf~~~~~~ 430 (485)
||++...-
T Consensus 214 -Gf~~~~~~ 221 (232)
T PRK06202 214 -GWRVERQW 221 (232)
T ss_pred -CCeEEecc
Confidence 99987643
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=133.79 Aligned_cols=154 Identities=23% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++.+|||+|||+|.++..+++. +..|+|+|+|+.|++.|+++....+ .++.+..+|+. ..+++||+|++..+
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v~~~~~ 136 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEEEEcch
Confidence 467789999999999999999987 6789999999999999999876433 47889888843 33578999999999
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH--------hcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK--------QRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
++|++ +...+++++.+.+++++.+.+. .... . ......+. .......+..++.++++++||++..
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~~~--~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLIFTFA--PYTP--L-LALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEEEEEC--CccH--H-HHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 98875 4567888988877554443322 1110 0 01111110 1112345788999999999999998
Q ss_pred Eeecch-HHHHHHHHH
Q 043471 429 AEDRTE-QFVQVLQRE 443 (485)
Q Consensus 429 ~~~~~~-~~~~~~~~~ 443 (485)
...... .|...+..|
T Consensus 212 ~~~~~~~~~~~~~~~~ 227 (230)
T PRK07580 212 TERISSGFYFSRLLEA 227 (230)
T ss_pred eeeccchhHHHHHHHH
Confidence 876443 344444444
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=133.61 Aligned_cols=118 Identities=27% Similarity=0.419 Sum_probs=100.6
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
...+..+++.+...++.+|||+|||+|..+..+++... +++|+|+++.+++.++++.....+++++.+|+.+ .++
T Consensus 25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~ 102 (223)
T TIGR01934 25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA--LPF 102 (223)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhc--CCC
Confidence 35556777777777889999999999999999998744 8999999999999999876533579999999987 556
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.++||+|+++.+++|.++ ...+++++.++|+|||++++.+..
T Consensus 103 ~~~~~D~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 103 EDNSFDAVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CCCcEEEEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEec
Confidence 6789999999999999987 669999999999999999987654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=126.37 Aligned_cols=128 Identities=23% Similarity=0.263 Sum_probs=96.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..++... +.+|+|+|+|+.|++.++++....+ .+++++.+|+.+++ ..++||+|++..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh---
Confidence 37899999999999999888664 4689999999999999988876443 36999999998864 357899999976
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+.+.+.+++.+.++|+|||.+++..... .........+.+...||+.+.....+
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~~------------------~~~~~~~~~e~~~~~~~~~~~~~~~~ 171 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGKK------------------YLDEIEEAKRKCQVLGVEPLEVPPLT 171 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCCC------------------cHHHHHHHHHhhhhcCceEeeccccC
Confidence 3467788999999999999999873110 00012233344445899988775443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-15 Score=125.90 Aligned_cols=145 Identities=19% Similarity=0.356 Sum_probs=111.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
++|+.+|||+|||.|.++.+|.+..+++..|+|++++.+..|.++ .+.++++|+.+- .|++++||.|+.+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 678999999999999999999987689999999999999988776 577899999763 488999999999999
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCC-----------CCCCh-hH-HHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF-----------GTPSV-EF-SEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
++++.++..+|+++.|+ |...+++.++... ..|.. .+ ..+......++.|..+.+++.++.|++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIR 161 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCE
Confidence 99999999999999776 5567777543211 00100 00 011112233567899999999999999
Q ss_pred EEEEeecch
Q 043471 426 DIIAEDRTE 434 (485)
Q Consensus 426 ~~~~~~~~~ 434 (485)
+++......
T Consensus 162 I~~~~~~~~ 170 (193)
T PF07021_consen 162 IEERVFLDG 170 (193)
T ss_pred EEEEEEEcC
Confidence 987655443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=129.34 Aligned_cols=138 Identities=13% Similarity=0.062 Sum_probs=107.7
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--------------CCCCeEEEEeeccCC
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--------------HFENVKFMCADVTSP 112 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--------------~~~~~~~~~~d~~~~ 112 (485)
+..+...++.+||+.|||.|..+.+|+++|++|+|+|+|+.+++.+.+.++ ...++++.++|+.++
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 344455567899999999999999999999999999999999999866431 124799999999884
Q ss_pred CCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 113 DLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 113 ~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+.+ -..+.||+|+-..++++++++.+.++.+.+.++|+|||.+++-...... ....|.+..+.+.++..+..
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~-----~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK-----KSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC-----CCCCCCCcCCHHHHHHhccC
Confidence 311 1236899999999999999888999999999999999998886543221 12334444567788888765
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-14 Score=127.77 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=100.3
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC----CCCCCCccE
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----TYPENSFDV 352 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~ 352 (485)
.+.++++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+.+++... .++.++.+|+... ++ .++||+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l-~~~~D~ 144 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHV-VEKVDV 144 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhc-cccCCE
Confidence 5788899999999999999999999876 359999999999999887766543 4788999998652 22 256999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
|++... .......++++++++|||||+++++-....-....... . ......+.++++||+++...+.
T Consensus 145 i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~---------~--~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 145 IYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPK---------E--IFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred EEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHH---------H--HHHHHHHHHHHcCCeEEEEEcC
Confidence 986421 11122356899999999999999952221110000000 0 0134459999999999988775
Q ss_pred c
Q 043471 433 T 433 (485)
Q Consensus 433 ~ 433 (485)
.
T Consensus 212 ~ 212 (226)
T PRK04266 212 E 212 (226)
T ss_pred C
Confidence 4
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.5e-15 Score=149.11 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=91.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++.... .+++++++|+.+++..+++++||+|+++.+
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 35789999999999999999876 569999999999999999875432 368889999887432277899999999998
Q ss_pred hhccC-----------hHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 130 LMYLS-----------DKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 130 ~~~~~-----------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+|++. .....+++++++++|||||.+++.+....
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 88752 34578999999999999999999876544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.7e-15 Score=135.73 Aligned_cols=142 Identities=17% Similarity=0.124 Sum_probs=102.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh----c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK----A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
...++.+|||||||+|.++..|++. | .+|+|+|+|++|++.|+++... .++++.+++... ++.++++||+|
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~--l~~~~~~fD~V 133 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDE--LVAEGERFDVV 133 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccc--ccccCCCccEE
Confidence 3356789999999999999888753 3 4899999999999999887542 467888888776 44467899999
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC--------------CccccC---CCCCCCCChhHHHHHh
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS--------------GDSKRK---HNPTHYREPRFYSKVF 187 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--------------~~~~~~---~~~~~~~~~~~~~~~~ 187 (485)
+|+.++||++++....+++++.++++ |.+++.+...... ...... .......+++.+.+.+
T Consensus 134 ~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll 211 (232)
T PRK06202 134 TSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA 211 (232)
T ss_pred EECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence 99999999998777789999999998 5566655432210 000000 0012233677788888
Q ss_pred hhcceecCCCC
Q 043471 188 KECQIQDASGN 198 (485)
Q Consensus 188 ~~~~~~~~~g~ 198 (485)
++ ||......
T Consensus 212 ~~-Gf~~~~~~ 221 (232)
T PRK06202 212 PQ-GWRVERQW 221 (232)
T ss_pred hC-CCeEEecc
Confidence 88 87654433
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.2e-15 Score=141.05 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=102.8
Q ss_pred hhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-------CCeEEEEeeccC
Q 043471 42 ERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-------ENVKFMCADVTS 111 (485)
Q Consensus 42 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~~d~~~ 111 (485)
..+.+++.+.. .++.+|||||||+|.++..|++.|.+|+|+|+|+.|++.|+++.... .+++|.++|+..
T Consensus 129 ~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 129 TVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 34555555543 35789999999999999999999999999999999999999875431 357888888765
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc-------ccCC---CCCCCCChh
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS-------KRKH---NPTHYREPR 181 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-------~~~~---~~~~~~~~~ 181 (485)
+ +++||+|+|..+++|++++....+++.+.++ .+||. +++.......... .... ...++...+
T Consensus 209 --l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~p~~~~~~~l~~~g~~~~g~~~~~r~y~~s~e 281 (315)
T PLN02585 209 --L---SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISFAPKTLYYDILKRIGELFPGPSKATRAYLHAEA 281 (315)
T ss_pred --c---CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEeCCcchHHHHHHHHHhhcCCCCcCceeeeCCHH
Confidence 2 4789999999999999876666777777764 55555 4433211100000 0000 012234688
Q ss_pred HHHHHhhhcceec
Q 043471 182 FYSKVFKECQIQD 194 (485)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (485)
.+++.++++||..
T Consensus 282 el~~lL~~AGf~v 294 (315)
T PLN02585 282 DVERALKKAGWKV 294 (315)
T ss_pred HHHHHHHHCCCEE
Confidence 8999999999854
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=129.82 Aligned_cols=102 Identities=17% Similarity=0.372 Sum_probs=87.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
+.++.+|||+|||+|..+..+++.. +.+++|+|+|+.|++.|+++.. ++.+.++|+.+ |+++++||+|++..++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~----~~~~~~~d~~~-~~~~~sfD~V~~~~vL 115 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP----NINIIQGSLFD-PFKDNFFDLVLTKGVL 115 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC----CCcEEEeeccC-CCCCCCEEEEEECChh
Confidence 4466799999999999999998874 6799999999999999998754 56788899888 8888999999999999
Q ss_pred cccC--CHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 360 LHIQ--DKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 360 ~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++ +..++++++.|++ ++.+++.++..
T Consensus 116 ~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 116 IHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 9995 4678899999987 56888887644
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-15 Score=146.76 Aligned_cols=115 Identities=20% Similarity=0.324 Sum_probs=81.4
Q ss_pred hhHHHhccCCC--CCC--CcEEEEcCCCCcchHHHHhhcCcEEEE---eCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 42 ERPEVLSLLPP--YEG--KTVLEFGAGIGRFTGELAKKAGHVIAL---DFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 42 ~~~~~~~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
+...+.+.++. ..+ ..+||||||+|.++.+|.+++..+..+ |..+..++.|-++ .+..+.+-+....+
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-----Gvpa~~~~~~s~rL 175 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-----GVPAMIGVLGSQRL 175 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-----Ccchhhhhhccccc
Confidence 34455555554 222 369999999999999999997544333 3344556666654 35555555544559
Q ss_pred CCCCCCeeEEEhhhhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 115 TFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
||++++||+|.|+-++-.. +.. .-+|-++.|+|||||+++++.+...
T Consensus 176 Pfp~~~fDmvHcsrc~i~W~~~~--g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 176 PFPSNAFDMVHCSRCLIPWHPND--GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred cCCccchhhhhcccccccchhcc--cceeehhhhhhccCceEEecCCccc
Confidence 9999999999998876444 332 3689999999999999999766543
|
; GO: 0008168 methyltransferase activity |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.4e-14 Score=124.67 Aligned_cols=134 Identities=18% Similarity=0.278 Sum_probs=105.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
..+++.+.+.++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.|++++...+ .++++..+|... ++ .++|
T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~-~~~~ 98 (187)
T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-EL-PGKA 98 (187)
T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hc-CcCC
Confidence 345577777888999999999999999998875 4699999999999999998875432 368888888742 33 3679
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+|++..... ....+++.+.+.|+|||++++.... ..+..++.+.++++||+.+.+.
T Consensus 99 D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~--------------------~~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 99 DAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTFIL--------------------LENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred CEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEEec--------------------HhhHHHHHHHHHHCCCCcceEE
Confidence 9999976543 4577899999999999999886421 1234677889999999876654
Q ss_pred e
Q 043471 431 D 431 (485)
Q Consensus 431 ~ 431 (485)
.
T Consensus 156 ~ 156 (187)
T PRK08287 156 Q 156 (187)
T ss_pred E
Confidence 3
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.4e-15 Score=129.47 Aligned_cols=98 Identities=24% Similarity=0.270 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
++.+|||+|||+|..+..+++. +.+|+|+|+|++|++.|+++... ..+++++++|+.+. +. .++||+|+++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~--~~-~~~fDlV~~~~- 120 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF--GQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC--CC-CCCccEEEEcc-
Confidence 4789999999999999999874 67999999999999999886543 23699999999884 33 67999999874
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+.+ .+.++++++++|+|||.+++...
T Consensus 121 ---~~~--~~~~l~~~~~~LkpGG~lv~~~~ 146 (187)
T PRK00107 121 ---VAS--LSDLVELCLPLLKPGGRFLALKG 146 (187)
T ss_pred ---ccC--HHHHHHHHHHhcCCCeEEEEEeC
Confidence 233 56899999999999999998643
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.9e-14 Score=133.68 Aligned_cols=97 Identities=28% Similarity=0.450 Sum_probs=81.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
..+..+|||+|||+|.++..+++.. +..++|+|+|+.|++.|+++.. ++.+.++|+.++|+++++||+|++.
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~----~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP----QVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC----CCeEEEeecccCCCcCCceeEEEEe
Confidence 3455789999999999999988764 2479999999999999987743 6889999999999999999999986
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+ +..+++++|+|||||++++..+.
T Consensus 159 ~~-------~~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 159 YA-------PCKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred cC-------CCCHHHHHhhccCCCEEEEEeCC
Confidence 54 23468999999999999998644
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-15 Score=129.40 Aligned_cols=155 Identities=27% Similarity=0.334 Sum_probs=116.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-C-CCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-T-YPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~-~~~ 347 (485)
..+.+++......+=.++||+|||||-.+..+-.. -.+++|+|+|.+|+++|.++- ... +..++++... + ..+
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg--~YD--~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG--LYD--TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc--chH--HHHHHHHHHHhhhccC
Confidence 66778888887777789999999999999888776 358999999999999998862 111 2233443322 1 346
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++||+|++..|+.++.+.+.++--+...|+|||.+.|+.-....... + ...+....-++...++.+++..||+++
T Consensus 187 er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f--~l~ps~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 187 ERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---F--VLGPSQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred CcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---e--ecchhhhhccchHHHHHHHHhcCceEE
Confidence 78999999999999999999999999999999999999544333211 0 011111123567889999999999999
Q ss_pred EEeecch
Q 043471 428 IAEDRTE 434 (485)
Q Consensus 428 ~~~~~~~ 434 (485)
.+++.+.
T Consensus 262 ~~~~tti 268 (287)
T COG4976 262 AIEDTTI 268 (287)
T ss_pred Eeecccc
Confidence 9887553
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.3e-13 Score=128.84 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=91.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKTYP 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~~~ 346 (485)
++-+++.+....+.+|||+|||+|.++..++++. +.+|+++|+|+.+++.|++++.... .++++...|+.+. ++
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~ 295 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE 295 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence 4556777766556799999999999999999886 5799999999999999999875332 2678888887653 34
Q ss_pred CCCccEEEEcccccccC-----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 ENSFDVIYSRDTILHIQ-----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
..+||+|+|+..+|... ...++++.++++|+|||.+++..
T Consensus 296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 56899999998886542 24578999999999999999984
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-14 Score=131.10 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=103.4
Q ss_pred HHhccCC---CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCC
Q 043471 45 EVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 45 ~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 118 (485)
.+++.+. ..++.+|||||||+|.++..|++.+.+|+|+|+|++|++.|+++.... .++++..+|+.. .+
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~ 125 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES-----LL 125 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh-----cc
Confidence 4444443 356789999999999999999999889999999999999999875432 368999988543 35
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCC------CCc--cccCCCCCCCCChhHHHHHhhhc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ------SGD--SKRKHNPTHYREPRFYSKVFKEC 190 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~ 190 (485)
++||+|++..+++|++++....+++++.+.+++++.+.+....... ... ...........+...+..+++.+
T Consensus 126 ~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAA 205 (230)
T ss_pred CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHC
Confidence 7899999999999998777889999999987655544432110000 000 00111122334667788899999
Q ss_pred ceecC
Q 043471 191 QIQDA 195 (485)
Q Consensus 191 ~~~~~ 195 (485)
||...
T Consensus 206 Gf~~~ 210 (230)
T PRK07580 206 GFKVV 210 (230)
T ss_pred CCceE
Confidence 98543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=128.39 Aligned_cols=125 Identities=20% Similarity=0.254 Sum_probs=98.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccC-CCCC--CCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADC-TKKT--YPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~-~~~~--~~~~~fD~i~~~~ 357 (485)
++.+|||+|||+|..+..+++.. +.+++|+|+|+.+++.|+++....+ .++.++++|+ ..++ +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998875 5689999999999999998876433 4799999998 6655 6678999999976
Q ss_pred cccccC--------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 358 TILHIQ--------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 358 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
...+.. ....++++++++|||||.+++..... .....+.+.+++.|+.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--------------------~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--------------------GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--------------------HHHHHHHHHHHhCccccc
Confidence 543321 25789999999999999999974211 013457788888888654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=127.11 Aligned_cols=111 Identities=22% Similarity=0.304 Sum_probs=92.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~ 345 (485)
.....+++.+.+.++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|++++...+ .++++..+|+.+...
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 345677788888889999999999999999888865 3699999999999999999886443 468999999987544
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+||+|++..++++++ +++.+.|+|||++++..
T Consensus 139 ~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 139 KHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 557899999999887765 47889999999998863
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.2e-14 Score=135.38 Aligned_cols=147 Identities=12% Similarity=0.236 Sum_probs=110.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
+.+++.+...++.+|||||||+|.++..++++. .+++++|. +.+++.++++... .++++++.+|+.+.+ ++
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~--~~- 214 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES--YP- 214 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC--CC-
Confidence 445566666777899999999999999999984 58999997 7899998876543 247999999987633 33
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-c--------CC---CCCCCCChhHHHHH
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-R--------KH---NPTHYREPRFYSKV 186 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~--------~~---~~~~~~~~~~~~~~ 186 (485)
.+|+|+++.++|+++++....++++++++|+|||.+++.+.......... . .. ........+.|.++
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 293 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEI 293 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcccccccccCCCHHHHHHH
Confidence 36999999999999876678899999999999999999987554322110 0 00 01122346789999
Q ss_pred hhhcceecC
Q 043471 187 FKECQIQDA 195 (485)
Q Consensus 187 ~~~~~~~~~ 195 (485)
++++||+.+
T Consensus 294 l~~aGf~~v 302 (306)
T TIGR02716 294 LESLGYKDV 302 (306)
T ss_pred HHHcCCCee
Confidence 999999654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=124.23 Aligned_cols=143 Identities=22% Similarity=0.227 Sum_probs=106.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+...+..+.+.++.+|||+|||+|.++..+++....+++++|+|+.+++.+++++...+.++.+..+|+.+. +++++
T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~-~~~~~ 101 (223)
T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA-VEFRP 101 (223)
T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh-ccCCC
Confidence 44556666667788899999999999999998876323999999999999999998765444688888888763 45678
Q ss_pred ccEEEEcccccccCC---------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCC
Q 043471 350 FDVIYSRDTILHIQD---------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYD 408 (485)
Q Consensus 350 fD~i~~~~~~~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 408 (485)
||+|+++..+..-.. ...+++++.++|||||++++.....
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------- 162 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------- 162 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc-------------------
Confidence 999999854332211 3567889999999999998863221
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.....+.+.++..||.........
T Consensus 163 -~~~~~~~~~l~~~g~~~~~~~~~~ 186 (223)
T PRK14967 163 -SGVERTLTRLSEAGLDAEVVASQW 186 (223)
T ss_pred -cCHHHHHHHHHHCCCCeEEEEeec
Confidence 123466777888888765554433
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.56 E-value=7e-14 Score=115.71 Aligned_cols=112 Identities=17% Similarity=0.273 Sum_probs=90.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~ 348 (485)
...+++.+.+.++.+|||+|||+|.++..++++. +.+++++|+|+.+++.+++++...+ .+++++..|+... +...+
T Consensus 8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (124)
T TIGR02469 8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLP 87 (124)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcC
Confidence 4456777777788899999999999999999876 4699999999999999998876443 3688888887652 22346
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+||+|++..... ...++++++++.|+|||++++..
T Consensus 88 ~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 88 EPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred CCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 899999976543 35689999999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=125.54 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=100.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+...+...++.+|||+|||+|.++..+++.+.+|+|+|+|+++++.++++.... .+++++.+|+.+. ..++||
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~----~~~~fD 84 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKG----VRGKFD 84 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccc----cCCccc
Confidence 34445555566789999999999999999998889999999999999999875422 2688888998652 245899
Q ss_pred EEEhhhhhhccChH-------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHH
Q 043471 123 MMFSNWLLMYLSDK-------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFY 183 (485)
Q Consensus 123 ~v~~~~~~~~~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
+|+++..+++.++. ....+++++.++|+|||.+++...... ....+
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------~~~~~ 149 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------GEPDT 149 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------ChHHH
Confidence 99999776655431 146789999999999999999765332 24566
Q ss_pred HHHhhhccee
Q 043471 184 SKVFKECQIQ 193 (485)
Q Consensus 184 ~~~~~~~~~~ 193 (485)
...+++.||.
T Consensus 150 ~~~l~~~gf~ 159 (179)
T TIGR00537 150 FDKLDERGFR 159 (179)
T ss_pred HHHHHhCCCe
Confidence 7778887873
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=122.34 Aligned_cols=110 Identities=24% Similarity=0.259 Sum_probs=90.3
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHH-hhcCcEEEEeCChHHHHHHHHHcCC--CCCeE-EEEeeccCCCCCCCCCCeeEEE
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELA-KKAGHVIALDFIDSVIKKNEEVNGH--FENVK-FMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~-~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+.......|||||||||..-.+.- ..+..||++|++++|-+.+.+.+.+ ..++. |++++.++++. .++++||+|+
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~-l~d~s~DtVV 150 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQ-LADGSYDTVV 150 (252)
T ss_pred hcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcc-cccCCeeeEE
Confidence 344445579999999999988775 3588999999999999988876543 34666 99999998431 5899999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+..++.-..+ ..+.|+++.|+|||||.+++-+-..
T Consensus 151 ~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 151 CTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEeccc
Confidence 9999988888 5699999999999999999976543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=126.64 Aligned_cols=145 Identities=21% Similarity=0.227 Sum_probs=105.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--------------CCCeEEEE
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--------------FENVKFMC 106 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~ 106 (485)
+....+++.+...++.+||..|||.|.....|+++|++|+|+|+|+.+++.+.+.... .++|++.+
T Consensus 24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 3444555556667788999999999999999999999999999999999998554321 23689999
Q ss_pred eeccCCCCCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHH
Q 043471 107 ADVTSPDLTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK 185 (485)
Q Consensus 107 ~d~~~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
+|+.++ +.. .++||+|+-..+++-++.+.+.++.+.+.++|+|||.+++........ ....|.+..+.+.+.+
T Consensus 104 gDfF~l--~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~----~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 104 GDFFEL--PPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG----EMEGPPFSVTEEEVRE 177 (218)
T ss_dssp S-TTTG--GGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS----CSSSSS----HHHHHH
T ss_pred cccccC--ChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc----CCCCcCCCCCHHHHHH
Confidence 999883 322 258999998888999988889999999999999999954443332211 1223444457888888
Q ss_pred Hhhhcce
Q 043471 186 VFKECQI 192 (485)
Q Consensus 186 ~~~~~~~ 192 (485)
+|. .+|
T Consensus 178 l~~-~~f 183 (218)
T PF05724_consen 178 LFG-PGF 183 (218)
T ss_dssp HHT-TTE
T ss_pred Hhc-CCc
Confidence 888 454
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-14 Score=129.84 Aligned_cols=173 Identities=16% Similarity=0.251 Sum_probs=120.0
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCC----CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCCh
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLP----PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID 86 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~ 86 (485)
+..-.||+.+.......++ .......+.+.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~ 77 (224)
T TIGR01983 7 ALAHEWWDPNGKFKPLHKM---------NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASE 77 (224)
T ss_pred HHHHHhcCCCCcHHHHHHh---------hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCH
Confidence 4455678876655444333 1111122332222 23578999999999999999988888999999999
Q ss_pred HHHHHHHHHcCCCC--CeEEEEeeccCCCCCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 87 SVIKKNEEVNGHFE--NVKFMCADVTSPDLTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 87 ~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+++.++++....+ ++++...|+.+. +.. .++||+|++..+++|+.+ ...+++++.++|+|||.+++......
T Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 78 ENIEVAKLHAKKDPLLKIEYRCTSVEDL--AEKGAKSFDVVTCMEVLEHVPD--PQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHHHHHHHHHHHcCCCceEEEeCCHHHh--hcCCCCCccEEEehhHHHhCCC--HHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999988754322 588999988763 222 478999999999999988 56899999999999999998765432
Q ss_pred CCCccc-------------c-CCCCCCCCChhHHHHHhhhcceecCC
Q 043471 164 QSGDSK-------------R-KHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 164 ~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
...... . ......+.+...+.++++++||...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~ 200 (224)
T TIGR01983 154 PKSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKD 200 (224)
T ss_pred chHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeee
Confidence 111000 0 00111233567788999999986544
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-14 Score=124.52 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=100.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.+..+++.+...++.+|||||||+|.++..+++++ .+|+++|+|+.+++.|+++... ..+++++.+|+.. ++
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~---~~ 94 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI---EL 94 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh---hc
Confidence 445556678887788999999999999999999874 5899999999999999876432 2478999888742 22
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.++||+|++.....+ ...+++.+.++|+|||++++...... ..+.....+++.|+....
T Consensus 95 -~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~---------------~~~~~~~~l~~~g~~~~~ 153 (187)
T PRK08287 95 -PGKADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE---------------NLHSALAHLEKCGVSELD 153 (187)
T ss_pred -CcCCCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh---------------hHHHHHHHHHHCCCCcce
Confidence 368999998765433 34688999999999999998654321 345566788888885443
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.7e-14 Score=125.57 Aligned_cols=111 Identities=30% Similarity=0.318 Sum_probs=93.1
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~ 345 (485)
......+++.+.++++.+|||||||+|..+..+++..+ .+|+++|+++.+++.|++++...+ .+++++.+|......
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~ 141 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE 141 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC
Confidence 35667888888899999999999999999998887753 599999999999999999987544 379999999887655
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+.++||+|++.....+++ +.+.+.|||||++++.
T Consensus 142 ~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 142 ENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEE
Confidence 668999999987765543 4677789999999886
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-14 Score=117.02 Aligned_cols=113 Identities=25% Similarity=0.266 Sum_probs=89.7
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.+..+++.+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... .++++++.+|+... ++.
T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ 84 (124)
T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA-LED 84 (124)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc-Chh
Confidence 45667788887777889999999999999999987 35899999999999999876432 24788988887642 222
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
..++||+|++..... ...++++++++.|+|||.+++..
T Consensus 85 ~~~~~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 346899999875432 24589999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.4e-14 Score=124.80 Aligned_cols=97 Identities=26% Similarity=0.323 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||+|||+|.++..++..+ .+|+|+|+|++|++.+++.... ..+++++++|+.+. + .+++||+|++..
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~--~-~~~~fD~I~s~~ 117 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDF--Q-HEEQFDVITSRA 117 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhc--c-ccCCccEEEehh
Confidence 358899999999999999998763 5899999999999888776432 24799999999873 2 357999999976
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++ ...+++.+.++|+|||.+++.
T Consensus 118 -~~~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 118 -LAS-----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -hhC-----HHHHHHHHHHhcCCCCEEEEE
Confidence 332 446888899999999999985
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=118.02 Aligned_cols=114 Identities=23% Similarity=0.401 Sum_probs=92.8
Q ss_pred hHHHHHHHHHcCCCC--CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccC-CCCCC
Q 043471 269 IETTKEFVAKLDLKP--GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC-TKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~-~~~~~ 345 (485)
.++++..++.+.++. +.-|||||||+|-.+..+.+. |..++|+|+|+.|++.|.++.- .-.+..+|+ +.+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~----egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVEREL----EGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhh----hcCeeeeecCCCCCC
Confidence 367778888887766 568999999999988888877 7899999999999999987432 135667776 45799
Q ss_pred CCCCccEEEEcccccccC-------C----HHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTILHIQ-------D----KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~-------~----~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..++||.|++..+++++- + ...++..++.+|++|++.+++.+
T Consensus 109 rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 109 RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 999999999998887762 2 33468889999999999999854
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=133.98 Aligned_cols=138 Identities=19% Similarity=0.139 Sum_probs=107.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
..+..++....++++.+|||+|||+|.++..++.. +..++|+|+++.|++.|++++...+ .++.+..+|+.++|++++
T Consensus 169 ~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 169 KLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 34556666677889999999999999999887664 7899999999999999999886433 247889999999988788
Q ss_pred CccEEEEccccccc---------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDTILHI---------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (485)
+||+|+++..+..- .-...+++++.++|||||++++..+. ..++.+++
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~-----------------------~~~~~~~~ 304 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT-----------------------RIDLESLA 304 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-----------------------CCCHHHHH
Confidence 99999997543211 11478999999999999999887432 12456789
Q ss_pred HhCCCeEEEEeec
Q 043471 420 KDAGFVDIIAEDR 432 (485)
Q Consensus 420 ~~aGf~~~~~~~~ 432 (485)
+.+|| ++.....
T Consensus 305 ~~~g~-i~~~~~~ 316 (329)
T TIGR01177 305 EDAFR-VVKRFEV 316 (329)
T ss_pred hhcCc-chheeee
Confidence 99999 7665543
|
This family is found exclusively in the Archaea. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-13 Score=121.00 Aligned_cols=130 Identities=20% Similarity=0.292 Sum_probs=102.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCC-CCCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~-~~~~~ 348 (485)
..+..+.+.++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++...+ .++.++.+|..+. +...+
T Consensus 31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~ 110 (198)
T PRK00377 31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE 110 (198)
T ss_pred HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence 34577788899999999999999999888754 3699999999999999998876443 5788999888763 22246
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+||.|++.. ...+...+++++.++|||||++++... ...+...+.+.|++.||..
T Consensus 111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--------------------~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 111 KFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--------------------LLETVNNALSALENIGFNL 165 (198)
T ss_pred CCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--------------------cHHHHHHHHHHHHHcCCCe
Confidence 899999854 235678899999999999999987522 1123467888899999953
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=120.76 Aligned_cols=134 Identities=25% Similarity=0.315 Sum_probs=102.5
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-C--eEEEEccCCCCCCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-S--VEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~--i~~~~~d~~~~~~~~~~fD 351 (485)
+++.+...++.+|||+|||+|.++..++.. +.+++|+|+|+.+++.+++++...+. + +.++..|..+. +++.+||
T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d 92 (188)
T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFD 92 (188)
T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCce
Confidence 344444467889999999999999999988 78999999999999999888753332 2 88888888663 4456899
Q ss_pred EEEEccccccc---------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCC
Q 043471 352 VIYSRDTILHI---------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410 (485)
Q Consensus 352 ~i~~~~~~~~~---------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
+|+++..+.+. .....+++++.++|||||.+++.... ..
T Consensus 93 ~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~--------------------~~ 152 (188)
T PRK14968 93 VILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS--------------------LT 152 (188)
T ss_pred EEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc--------------------cC
Confidence 99997655331 11456899999999999999887321 12
Q ss_pred CHHHHHHHHHhCCCeEEEEe
Q 043471 411 DVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~~ 430 (485)
..+.+.++++++||++..+.
T Consensus 153 ~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 153 GEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred CHHHHHHHHHHCCCeeeeee
Confidence 34678899999999887654
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-14 Score=128.53 Aligned_cols=115 Identities=22% Similarity=0.308 Sum_probs=87.9
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeec-cCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADV-TSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~-~~~~~~~~~~ 119 (485)
.+.+.+.. ++.+|||+|||+|..+..+++. +.+|+|+|+|+++++.|+++... .++++++++|+ ..++..++++
T Consensus 32 ~~~~~~~~-~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~ 110 (202)
T PRK00121 32 DWAELFGN-DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDG 110 (202)
T ss_pred CHHHHcCC-CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCcc
Confidence 34444444 5779999999999999999887 45899999999999999886532 25799999999 6532225678
Q ss_pred CeeEEEhhhhhhccC------hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLS------DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|+++....+.. ......+++++.++|+|||.+++...
T Consensus 111 ~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 111 SLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 999999876543322 11145799999999999999999644
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.9e-14 Score=131.99 Aligned_cols=95 Identities=24% Similarity=0.369 Sum_probs=79.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc-----CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA-----GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..|++.. .+|+|+|+|++|++.|+++. +++++.++|+.+ +|+++++||+|++.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~--lp~~~~sfD~I~~~ 158 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHR--LPFADQSLDAIIRI 158 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeeccc--CCCcCCceeEEEEe
Confidence 455789999999999999988752 37999999999999998864 579999999987 67888999999986
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+ + ..+++++|+|+|||++++..+.
T Consensus 159 ~~----~-----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 159 YA----P-----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred cC----C-----CCHHHHHhhccCCCEEEEEeCC
Confidence 53 1 2467899999999999987554
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-14 Score=122.80 Aligned_cols=145 Identities=25% Similarity=0.342 Sum_probs=113.2
Q ss_pred EEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC----CCCCCCccEEEEccc
Q 043471 286 KVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----TYPENSFDVIYSRDT 358 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~i~~~~~ 358 (485)
+|||||||.|.....+.+.. +..+.++|.||.+++..+++..-...++...+.|+... |.+.+++|.|++..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 89999999999999888765 37999999999999999988765455666666676553 456789999999999
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-------hhHHHHHHhcCC--CCCCHHHHHHHHHhCCCeEE
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-------VEFSEYIKQRGY--DLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~~~~~~~~~~~~--~~~~~~~~~~~l~~aGf~~~ 427 (485)
|..++ ....++++++++|||||.+++.|++...-... -..+-|....|. .+++.+++.+++.++||..+
T Consensus 154 LSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~ 233 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEV 233 (264)
T ss_pred EeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchh
Confidence 98883 68889999999999999999999876542110 011223333343 56899999999999999987
Q ss_pred EEe
Q 043471 428 IAE 430 (485)
Q Consensus 428 ~~~ 430 (485)
+..
T Consensus 234 ~~~ 236 (264)
T KOG2361|consen 234 QLE 236 (264)
T ss_pred ccc
Confidence 654
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=120.95 Aligned_cols=141 Identities=15% Similarity=0.205 Sum_probs=99.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+.+.+.++ ++.+|||||||+|.++..+++. +.+++|+|+|+++++.+++ .+++++++|+.+...++++++||
T Consensus 5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-----~~~~~~~~d~~~~l~~~~~~sfD 77 (194)
T TIGR02081 5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-----RGVNVIQGDLDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-----cCCeEEEEEhhhcccccCCCCcC
Confidence 34455543 5679999999999999999765 6689999999999999876 35789999987521235678999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC----------C-CCcccc-------CCCCCCCCChhHHH
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH----------Q-SGDSKR-------KHNPTHYREPRFYS 184 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~----------~-~~~~~~-------~~~~~~~~~~~~~~ 184 (485)
+|+++.+++|+++ ...+++++.|.+++ ++++.+... . .....+ ...+.++.+.+.+.
T Consensus 78 ~Vi~~~~l~~~~d--~~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 152 (194)
T TIGR02081 78 YVILSQTLQATRN--PEEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFE 152 (194)
T ss_pred EEEEhhHhHcCcC--HHHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHH
Confidence 9999999999988 56899998887664 344322210 0 000000 11123345788899
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
++++++||....
T Consensus 153 ~ll~~~Gf~v~~ 164 (194)
T TIGR02081 153 DLCGELNLRILD 164 (194)
T ss_pred HHHHHCCCEEEE
Confidence 999999996533
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=126.31 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=90.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHH-Hhh-cC-CCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCCCCCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFY-MAD-KF-DVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~-l~~-~~-~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~~~~~~ 347 (485)
.++..+...++.+|+|||||.|.++.. ++. .+ +.+++|+|+++++++.|++.+. ++..+++|..+|+.+.+...
T Consensus 114 ~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l 193 (296)
T PLN03075 114 DLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESL 193 (296)
T ss_pred HHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccccc
Confidence 344444444778999999998855443 333 23 5699999999999999999883 55678999999998864334
Q ss_pred CCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.||+|++. +++++ .++.++++++.+.|+|||.+++..
T Consensus 194 ~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 194 KEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 789999999 88888 689999999999999999999984
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.6e-14 Score=125.74 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=87.5
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~ 114 (485)
.....+++.+...++.+|||||||+|..+..+++. +.+|+|+|+++++++.|+++.... .+++++.+|..+.
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~-- 136 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG-- 136 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC--
Confidence 34566778888888899999999999999998876 368999999999999998865432 3589999998762
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
....++||+|++..++.+++ +++.+.|+|||.+++.
T Consensus 137 ~~~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 137 LEKHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CccCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence 22457999999998877665 3578999999999885
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=120.43 Aligned_cols=112 Identities=26% Similarity=0.420 Sum_probs=88.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCC-eEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~-i~~~~~d~~~~~~~~~~f 350 (485)
.-+++.+...++.+|||+|||+|.++..++++. ..+|+++|+++.+++.+++++...+.. ++++..|..+. .++++|
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~-~~~~~f 99 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA-LPDGKF 99 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT-CCTTCE
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc-ccccce
Confidence 344444444467799999999999999999886 347999999999999999998755433 89999998764 346899
Q ss_pred cEEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEE
Q 043471 351 DVIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 351 D~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|+|+++..++.-.+ ...+++++.+.|||||.+++.
T Consensus 100 D~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 100 DLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp EEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 99999988765543 578899999999999999776
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.5e-13 Score=128.60 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=97.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~ 359 (485)
.++.+|||+|||+|.++..++... +.+++|+|+|+.+++.|++++...+.++++.++|+.+..++ .++||+|+|+...
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 456799999999999999988764 67999999999999999999876666899999998664332 4689999997643
Q ss_pred ccc---------------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 360 LHI---------------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 360 ~~~---------------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
..- .+ ...+++.+.+.|+|||.+++... ....+.
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG---------------------~~Q~e~ 388 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG---------------------FDQGAA 388 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC---------------------ccHHHH
Confidence 110 01 33567777889999999887621 123567
Q ss_pred HHHHHHhCCCeEEEE
Q 043471 415 YGQMLKDAGFVDIIA 429 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~ 429 (485)
+.+++++.||..+.+
T Consensus 389 V~~ll~~~Gf~~v~v 403 (423)
T PRK14966 389 VRGVLAENGFSGVET 403 (423)
T ss_pred HHHHHHHCCCcEEEE
Confidence 889999999987655
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-13 Score=122.68 Aligned_cols=110 Identities=28% Similarity=0.321 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.++++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+ .+++++.+|+......
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~ 143 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEP 143 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcc
Confidence 3456788888889999999999999999999998753 469999999999999999987544 4799999999775444
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+||+|++.....++ .+.+.+.|+|||++++.
T Consensus 144 ~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 144 LAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMP 176 (215)
T ss_pred cCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEE
Confidence 5789999998766554 35678899999999886
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-12 Score=121.04 Aligned_cols=150 Identities=18% Similarity=0.128 Sum_probs=99.4
Q ss_pred HHHHHHH---HHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFV---AKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
..+..++ +.+.++++.+|||+|||+|.++..+++..+ ..|+++|+|+.+.+...+..... .++.++..|+...
T Consensus 116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQ 194 (293)
T ss_pred HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChh
Confidence 3444453 445688999999999999999999999873 58999999997654444333221 3788889998642
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
....++||+|++... ..++...++.++.++|||||.++|. +.............. ++ +++ +.|++
T Consensus 195 ~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~-ika~~id~g~~pe~~--------f~-~ev-~~L~~ 261 (293)
T PTZ00146 195 KYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS-IKANCIDSTAKPEVV--------FA-SEV-QKLKK 261 (293)
T ss_pred hhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE-EeccccccCCCHHHH--------HH-HHH-HHHHH
Confidence 223468999999764 2333445667999999999999995 221111000000000 11 234 78999
Q ss_pred CCCeEEEEeecc
Q 043471 422 AGFVDIIAEDRT 433 (485)
Q Consensus 422 aGf~~~~~~~~~ 433 (485)
+||++++..+..
T Consensus 262 ~GF~~~e~v~L~ 273 (293)
T PTZ00146 262 EGLKPKEQLTLE 273 (293)
T ss_pred cCCceEEEEecC
Confidence 999988776543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-14 Score=123.78 Aligned_cols=152 Identities=15% Similarity=0.183 Sum_probs=113.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
++..++++..+...+-.++||+|||||..+..|.......+|+|+|++|+++|.++-. --+..++|+..+--.....
T Consensus 111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCC
Confidence 3445566666666556799999999999999999999999999999999999988621 1234455554321113457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.||+|++..++.++.. .+.++.-+...|+|||.+.++.-........--.....+.+...+.+..++..|+..+.
T Consensus 188 r~DLi~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 188 RFDLIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred cccchhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEE
Confidence 8999999999999998 77999999999999999999755443332222223334555778889999999985544
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=115.49 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=102.2
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.+.+.+ ++|.||||+|||.|.+..+|.+ ++.+.+|+|++++.+..|.++ .++.+++|+.+--..|++++||.
T Consensus 6 ~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 6 IIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 344443 4589999999999999999987 488999999999999888884 78899999987423489999999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC------------Cccc------cCCCCCCCCChhHHHH
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS------------GDSK------RKHNPTHYREPRFYSK 185 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~------------~~~~------~~~~~~~~~~~~~~~~ 185 (485)
|+++.+++++.. .+.+|+++.|+ |...+++.+++..- .... -...+.++.+..-+..
T Consensus 79 VIlsqtLQ~~~~--P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~ 153 (193)
T PF07021_consen 79 VILSQTLQAVRR--PDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFED 153 (193)
T ss_pred EehHhHHHhHhH--HHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHH
Confidence 999999999988 45888888655 66788887775110 0000 0111233346667778
Q ss_pred Hhhhcceec
Q 043471 186 VFKECQIQD 194 (485)
Q Consensus 186 ~~~~~~~~~ 194 (485)
++.+.|+..
T Consensus 154 lc~~~~i~I 162 (193)
T PF07021_consen 154 LCRELGIRI 162 (193)
T ss_pred HHHHCCCEE
Confidence 888877744
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-13 Score=124.13 Aligned_cols=120 Identities=25% Similarity=0.276 Sum_probs=89.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC--CeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC--SVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....+. .+.+..+ +.+||+|+++..
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~--------~~~fD~Vvani~ 188 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG--------DLKADVIVANIL 188 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC--------CCCcCEEEEcCc
Confidence 457889999999999998887765333699999999999999998764321 2222111 227999999754
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+ ....+++++.++|||||+++++.... ...+.+.+.+++.||+++....
T Consensus 189 ~~---~~~~l~~~~~~~LkpgG~lilsgi~~--------------------~~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 189 AN---PLLELAPDLARLLKPGGRLILSGILE--------------------EQADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HH---HHHHHHHHHHHhcCCCcEEEEEECcH--------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 32 34678899999999999999985422 1346788999999999887654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.2e-13 Score=123.65 Aligned_cols=138 Identities=25% Similarity=0.367 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+. ..+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.|++++...+ .++++..+|+.+ ++++
T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE-PLPG 152 (251)
T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc-cCcC
Confidence 34455555553 345699999999999999999875 5699999999999999999876433 258999999876 4567
Q ss_pred CCccEEEEcccccc------cC--------------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH
Q 043471 348 NSFDVIYSRDTILH------IQ--------------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY 401 (485)
Q Consensus 348 ~~fD~i~~~~~~~~------~~--------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 401 (485)
++||+|+++..+.. +. ....+++++.++|+|||.+++...
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------------- 218 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------- 218 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------------
Confidence 89999999654332 10 123678999999999999988621
Q ss_pred HHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 402 IKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
....+.+.++|+++||+.+.+.
T Consensus 219 -------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678899999999877653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=118.67 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=95.0
Q ss_pred cChhhhHHHhccCCCC--CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
++.+...+.++.+..+ ++.-|||||||+|..+..|...|+..+|+|+|+.|++.|.++.- .-.++.+|+.. .+|
T Consensus 32 IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~---egdlil~DMG~-Glp 107 (270)
T KOG1541|consen 32 IQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVEREL---EGDLILCDMGE-GLP 107 (270)
T ss_pred ehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhh---hcCeeeeecCC-CCC
Confidence 3444455556665544 47789999999999999999999999999999999999997421 25788999874 589
Q ss_pred CCCCCeeEEEhhhhhh---------ccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLM---------YLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~---------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+.++||-|++..++. |.+......++..++.+|++|+..++...
T Consensus 108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 9999999998876654 34444567889999999999999999754
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=123.53 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=89.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~ 112 (485)
..+.....+++.+...++.+|||||||+|..+..+++. + .+|+++|+++++++.|+++... ..+++++++|...
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~- 138 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL- 138 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc-
Confidence 34455567888888889999999999999999998876 2 5999999999999999987643 2479999999876
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...+.+.||+|++.....+++ +.+.+.|+|||.+++.
T Consensus 139 -~~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 139 -GYEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred -CCCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 333567899999877654443 3567789999999884
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=121.49 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=94.5
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--CCCCCCCeeEE
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--LTFSEDSVDMM 124 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~D~v 124 (485)
.++..++.+|||+|||+|..+..+++.. .+|+|+|+++.|++.+.++.....|+.++.+|+.... .++ .++||+|
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l-~~~~D~i 145 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHV-VEKVDVI 145 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhc-cccCCEE
Confidence 4777889999999999999999999873 5899999999999877666554468999999987521 112 3569999
Q ss_pred EhhhhhhccChH-HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 125 FSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 125 ~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
++.. +++ ....+++++.++|||||.++++-. .. ..+.+. .+. +..+...+.++++||+...
T Consensus 146 ~~d~-----~~p~~~~~~L~~~~r~LKpGG~lvI~v~-~~--~~d~~~-~~~--~~~~~~~~~l~~aGF~~i~ 207 (226)
T PRK04266 146 YQDV-----AQPNQAEIAIDNAEFFLKDGGYLLLAIK-AR--SIDVTK-DPK--EIFKEEIRKLEEGGFEILE 207 (226)
T ss_pred EECC-----CChhHHHHHHHHHHHhcCCCcEEEEEEe-cc--cccCcC-CHH--HHHHHHHHHHHHcCCeEEE
Confidence 8642 222 134578999999999999999522 11 100000 011 1123345888888986543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=124.09 Aligned_cols=108 Identities=24% Similarity=0.274 Sum_probs=87.1
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 115 (485)
.....+++.+...++.+|||||||+|..+..|++... +|+++|+++++++.|+++.... .+++++.+|+... .
T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~--~ 141 (215)
T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG--W 141 (215)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC--C
Confidence 3456788888888999999999999999999998844 4999999999999999876432 4799999998763 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...++||+|++.....+++ +.+.+.|+|||++++.
T Consensus 142 ~~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 142 EPLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred cccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 2346899999876554443 4578899999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=128.74 Aligned_cols=114 Identities=20% Similarity=0.247 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
-...+++.+......+|||+|||+|.++..++++. +.+++++|+|+.+++.|++++...+...++...|.... ..++
T Consensus 184 gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~--~~~~ 261 (342)
T PRK09489 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD--IKGR 261 (342)
T ss_pred HHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc--cCCC
Confidence 44566676765555699999999999999999875 46999999999999999998875444566777777553 2578
Q ss_pred ccEEEEccccccc-----CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHI-----QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||+|+|+..+|+. .....+++++.+.|||||.+++..
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 9999999998864 235788999999999999998874
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-12 Score=114.58 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=112.5
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-------------CCCCC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI-------------GLKCS 332 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-------------~~~~~ 332 (485)
....+.+.+.+..+...++.+||..|||.|.-+.+|++. |.+|+|+|+|+.+++.+.+... ..+.+
T Consensus 26 ~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 104 (226)
T PRK13256 26 ESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD 104 (226)
T ss_pred CCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc
Confidence 333455556666676667789999999999999999998 8899999999999999866321 11347
Q ss_pred eEEEEccCCCCCCC---CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC
Q 043471 333 VEFEVADCTKKTYP---ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY 407 (485)
Q Consensus 333 i~~~~~d~~~~~~~---~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 407 (485)
+++.++|+.+++.+ .++||+|+-..+|++++ .+.++++.+.++|+|||.+++...........+.
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPP---------- 174 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPP---------- 174 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCC----------
Confidence 89999999998632 26899999999999995 4788999999999999998887653321111110
Q ss_pred CCCCHHHHHHHHHhCCCeEEEE
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
...+.+++.+++.. +|++..+
T Consensus 175 f~v~~~e~~~lf~~-~~~i~~l 195 (226)
T PRK13256 175 YSVTQAELIKNFSA-KIKFELI 195 (226)
T ss_pred CcCCHHHHHHhccC-CceEEEe
Confidence 12356788888865 3554443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=124.63 Aligned_cols=131 Identities=22% Similarity=0.246 Sum_probs=96.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+++.+ ..++.+|||+|||+|.++..+++....+|+|+|+++.+++.|+++.... ..++.+...+.. +..+++||
T Consensus 151 ~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~--~~~~~~fD 227 (288)
T TIGR00406 151 EWLEDL-DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE--QPIEGKAD 227 (288)
T ss_pred HHHHhh-cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc--cccCCCce
Confidence 344444 3467899999999999998888653358999999999999999987633 334556655533 23457899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|+++.... ....++.++.++|||||+++++.... ....++.+.+++. |+++....
T Consensus 228 lVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~~--------------------~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 228 VIVANILAE---VIKELYPQFSRLVKPGGWLILSGILE--------------------TQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred EEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCcH--------------------hHHHHHHHHHHcc-CceeeEec
Confidence 999976543 34678999999999999999985321 1245677777776 88876543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=125.53 Aligned_cols=111 Identities=23% Similarity=0.188 Sum_probs=87.4
Q ss_pred HhccCCCCCCCcEEEEcCCCCcch-HHHHh-h--cCcEEEEeCChHHHHHHHHHcCC----CCCeEEEEeeccCCCCCCC
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFT-GELAK-K--AGHVIALDFIDSVIKKNEEVNGH----FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~-~--~~~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~~~~~~~ 117 (485)
++..+....+.+|+|||||.|.++ +.+++ . +.+++|+|+++++++.|++.... .++++|.++|+.+. +..
T Consensus 115 ~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~--~~~ 192 (296)
T PLN03075 115 LLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV--TES 192 (296)
T ss_pred HHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc--ccc
Confidence 344444447889999999988654 44443 3 45799999999999999997732 24799999999873 223
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.+.||+|++. +++++..+...++++++.+.|+|||.+++..
T Consensus 193 l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 193 LKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 4789999999 8888865557899999999999999999964
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=119.49 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=98.7
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
.+.|...+..+...++.+|||+|||+|.++..+++. +.+|+++|+++.+++.++++... ..++.++.+|+.+.
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~- 104 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI- 104 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh-
Confidence 455556678888889999999999999999998875 35899999999999999876432 24789999998653
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
++...+.||+|++... ... ...+++++.+.|+|||.+++...... ........+++.||
T Consensus 105 l~~~~~~~D~V~~~~~---~~~--~~~~l~~~~~~LkpgG~lv~~~~~~~---------------~~~~~~~~l~~~g~ 163 (198)
T PRK00377 105 LFTINEKFDRIFIGGG---SEK--LKEIISASWEIIKKGGRIVIDAILLE---------------TVNNALSALENIGF 163 (198)
T ss_pred HhhcCCCCCEEEECCC---ccc--HHHHHHHHHHHcCCCcEEEEEeecHH---------------HHHHHHHHHHHcCC
Confidence 2222468999998541 222 56899999999999999988543221 23455666677776
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-13 Score=119.02 Aligned_cols=112 Identities=26% Similarity=0.398 Sum_probs=86.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCc--EEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~--v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
+.+++.+...++.+|||+|||+|.++..+++.+.+ |+++|+++.+++.+++.... ..+++++.+|+.+. .+++
T Consensus 21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~---~~~~ 97 (170)
T PF05175_consen 21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEA---LPDG 97 (170)
T ss_dssp HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTT---CCTT
T ss_pred HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccc---cccc
Confidence 34555555557889999999999999999998665 99999999999999886432 22489999998652 2468
Q ss_pred CeeEEEhhhhhhccCh---HHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSD---KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+||+|+|+=.++.-.+ ....++++++.+.|+|||.+++.
T Consensus 98 ~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 98 KFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp CEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 9999999955433332 23678999999999999999774
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-12 Score=113.88 Aligned_cols=111 Identities=25% Similarity=0.343 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~ 348 (485)
.+...+++.+.++++.+|||||||+|..+..+++..+ +|+.+|..+...+.|++++..++. |+.+.++|...=--+..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 5788899999999999999999999999999998755 999999999999999999987763 79999999977433458
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||.|+...+...+| +.+.+.|||||++++-.-
T Consensus 138 PyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 999999999887776 467788999999998743
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.1e-13 Score=129.30 Aligned_cols=117 Identities=19% Similarity=0.253 Sum_probs=93.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+....+..+||||||+|.++..+|++ ...++|+|+++.++..|.++... ..|+.++++|+..+...++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 45677777777789999999999999999998 46899999999999988876543 358999999997643346789
Q ss_pred CeeEEEhhhhhhccChHH----HHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKE----VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~----~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++|.|+++....|...+. ...++.++.|+|+|||.+.+.+-
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 999999876554433211 25899999999999999999643
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=120.46 Aligned_cols=104 Identities=21% Similarity=0.347 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~~~fD~i~~~~ 357 (485)
...+|||||||+|.++..++++. +.+++|+|+++.+++.|++++...+ .+++++++|+.+++ ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 45699999999999999999876 5799999999999999988865332 38999999997643 4556899999876
Q ss_pred cccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...|.+. .+.+++++.++|||||.+++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 5444322 2579999999999999999874
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=129.05 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=89.7
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~ 116 (485)
+-+++.++...+.+|||+|||+|.++..++++ ..+|+++|+|+.+++.|+++... ..+++++..|..+. +
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~---~ 294 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG---V 294 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc---C
Confidence 46778887766679999999999999999988 46899999999999999986421 12678888887542 2
Q ss_pred CCCCeeEEEhhhhhhc---cChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 117 SEDSVDMMFSNWLLMY---LSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.++||+|+|+-.+|. +++....++++.+.+.|+|||.+++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3468999999865543 334446789999999999999999963
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.4e-12 Score=119.81 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=99.9
Q ss_pred HHHHHHHHH-cCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAK-LDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~ 345 (485)
..+...+.. +...++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++... ..+++++++|+.+. +
T Consensus 107 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~ 185 (284)
T TIGR03533 107 ELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L 185 (284)
T ss_pred HHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c
Confidence 334444442 323445799999999999999999876 579999999999999999998643 35799999998652 3
Q ss_pred CCCCccEEEEccccc-------------ccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 346 PENSFDVIYSRDTIL-------------HIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~-------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
++++||+|+++.... |-+ ....+++++.+.|+|||++++...
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g------------- 252 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG------------- 252 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 456899999973211 111 125678999999999999988731
Q ss_pred HHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 401 YIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.+.+.+.+++.++||.-....
T Consensus 253 ---------~~~~~v~~~~~~~~~~~~~~~ 273 (284)
T TIGR03533 253 ---------NSMEALEEAYPDVPFTWLEFE 273 (284)
T ss_pred ---------cCHHHHHHHHHhCCCceeeec
Confidence 123467778888888665443
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=126.62 Aligned_cols=108 Identities=20% Similarity=0.305 Sum_probs=84.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC-CC--CeEEEEeeccCC-CCCCC--CCCeeEE
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH-FE--NVKFMCADVTSP-DLTFS--EDSVDMM 124 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~-~~--~~~~~~~d~~~~-~~~~~--~~~~D~v 124 (485)
++.+|||+|||+|..+..|++. +.+|+|+|+|++|++.|+++... .+ ++.++++|+.+. +++.. .+...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 5678999999999999999887 57999999999999999887532 23 467789998763 22211 1133455
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++..+++++++++..++++++++.|+|||.+++....
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 5667889998877889999999999999999985443
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=117.25 Aligned_cols=131 Identities=20% Similarity=0.272 Sum_probs=104.9
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CCCCCccEEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YPENSFDVIY 354 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~~~~fD~i~ 354 (485)
......+|||+|||+|.++..++++. .++++|||+++.+.+.|++++. .+..++++++.|+.+.. ....+||+|+
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLII 120 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEE
Confidence 34447799999999999999999996 5899999999999999999886 46689999999998863 3345799999
Q ss_pred Eccccccc------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHH
Q 043471 355 SRDTILHI------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416 (485)
Q Consensus 355 ~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (485)
|+..+.-. -+.+++++.+.++|||||.+.+.. +.....++.
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~---------------------r~erl~ei~ 179 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH---------------------RPERLAEII 179 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe---------------------cHHHHHHHH
Confidence 98655432 147788999999999999999883 122345778
Q ss_pred HHHHhCCCeEEEEee
Q 043471 417 QMLKDAGFVDIIAED 431 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~ 431 (485)
++|++.+|....+..
T Consensus 180 ~~l~~~~~~~k~i~~ 194 (248)
T COG4123 180 ELLKSYNLEPKRIQF 194 (248)
T ss_pred HHHHhcCCCceEEEE
Confidence 888888887766543
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=108.06 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.-.-.+..|.+.++.+++|||||||.++..++... ..+++++|-++++++..++|...++ .++.++.+++.+.--...
T Consensus 22 IRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~ 101 (187)
T COG2242 22 IRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP 101 (187)
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC
Confidence 34456788899999999999999999999999433 5799999999999999999887554 689999999977532223
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC-eEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF-VDI 427 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-~~~ 427 (485)
++|.|+.... .+.+.+|+.+...|||||++++.-. .+.+.....+.+++.|+ +++
T Consensus 102 ~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nai--------------------tlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 102 SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAI--------------------TLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEee--------------------cHHHHHHHHHHHHHcCCceEE
Confidence 7999999887 3678999999999999999998732 12245567788899999 555
Q ss_pred EE
Q 043471 428 IA 429 (485)
Q Consensus 428 ~~ 429 (485)
.+
T Consensus 158 ~v 159 (187)
T COG2242 158 QV 159 (187)
T ss_pred EE
Confidence 54
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-12 Score=117.70 Aligned_cols=106 Identities=21% Similarity=0.301 Sum_probs=83.2
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---- 344 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---- 344 (485)
..++.+.+. ++++.+|||+|||+|.++..+++..+ .+|+|+|+++ |. .. .+++++++|+.+.+
T Consensus 39 l~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~--------~~-~~v~~i~~D~~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD--------PI-VGVDFLQGDFRDELVLKA 108 (209)
T ss_pred hHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc--------CC-CCcEEEecCCCChHHHHH
Confidence 345555555 57888999999999999999998763 5999999988 21 11 26899999998853
Q ss_pred ----CCCCCccEEEEcccccccCCH-----------HHHHHHHHhcCCCCcEEEEEec
Q 043471 345 ----YPENSFDVIYSRDTILHIQDK-----------PALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ----~~~~~fD~i~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+.+++||+|+|..+.++..++ ..+|+++.++|||||.+++..+
T Consensus 109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 567899999998766554332 4689999999999999999754
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=118.80 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=81.7
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------ 114 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------ 114 (485)
++.+.+. ..++.+|||||||+|.++..+++.. .+|+|+|+++ | ...++++++++|+.+...
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHH
Confidence 3444444 4568899999999999999999873 5899999998 2 122579999999987421
Q ss_pred CCCCCCeeEEEhhhhhhccChHH---------HHHHHHHHHhhcccCcEEEEEec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKE---------VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~---------~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++.+++||+|+|+.++++...+. ...+++++.++|+|||.+++..+
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 24568999999987766654321 24689999999999999999654
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-12 Score=119.69 Aligned_cols=137 Identities=28% Similarity=0.371 Sum_probs=103.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc-CCCCCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI-GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~~~~d~~~~~~~~~ 348 (485)
.++.++......++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|++++. ....++.++.+|+... ++.+
T Consensus 96 l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~-~~~~ 174 (275)
T PRK09328 96 LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP-LPGG 174 (275)
T ss_pred HHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc-CCCC
Confidence 34445545556677899999999999999999876 5799999999999999999986 4445799999998653 3357
Q ss_pred CccEEEEccccccc--------------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH
Q 043471 349 SFDVIYSRDTILHI--------------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI 402 (485)
Q Consensus 349 ~fD~i~~~~~~~~~--------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 402 (485)
+||+|+++....-. .....+++++.++|+|||++++...
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g--------------- 239 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG--------------- 239 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC---------------
Confidence 89999996432110 1135678889999999999998520
Q ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 403 KQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
....+.+.+++++.||..+.+
T Consensus 240 ------~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 ------YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred ------chHHHHHHHHHHhCCCceeEE
Confidence 112356888999999986655
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=119.45 Aligned_cols=135 Identities=29% Similarity=0.334 Sum_probs=97.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCC--eEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCS--VEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~--i~~~~~d~~~~~~~~~ 348 (485)
.-+.++.+ ..++.+|||+|||+|.+++..++. |+ +++|+|+.|.+++.|++++...+.. +.....+....+ ..+
T Consensus 152 cL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~ 228 (300)
T COG2264 152 CLEALEKL-LKKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENG 228 (300)
T ss_pred HHHHHHHh-hcCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccC
Confidence 33444444 347889999999999999988876 55 7999999999999999998643322 223333333322 236
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|+++=... -...+...+.+.|||||+++++..... -.+.+.+.++++||+++.
T Consensus 229 ~~DvIVANILA~---vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 229 PFDVIVANILAE---VLVELAPDIKRLLKPGGRLILSGILED--------------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred cccEEEehhhHH---HHHHHHHHHHHHcCCCceEEEEeehHh--------------------HHHHHHHHHHhCCCeEeE
Confidence 999999975221 245778899999999999999953211 145788899999999987
Q ss_pred Eeec
Q 043471 429 AEDR 432 (485)
Q Consensus 429 ~~~~ 432 (485)
....
T Consensus 286 ~~~~ 289 (300)
T COG2264 286 VLER 289 (300)
T ss_pred EEec
Confidence 7543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-13 Score=120.52 Aligned_cols=107 Identities=21% Similarity=0.402 Sum_probs=83.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC-CCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD-LTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~-~~~~~~~~D~v~~~~ 128 (485)
...+|||||||+|.++..++++ ..+|+|+|+++++++.|+++... .++++++++|+.++. ..++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 45899999999999998876432 358999999997632 114567999999886
Q ss_pred hhhccChH------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 129 LLMYLSDK------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 129 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...|.... ....+++++.++|||||.+++...
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 54443221 015799999999999999998643
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-13 Score=116.01 Aligned_cols=160 Identities=22% Similarity=0.240 Sum_probs=108.6
Q ss_pred chHHHHHHHHHcCCC------CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-CCCeEEEEccC
Q 043471 268 GIETTKEFVAKLDLK------PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-KCSVEFEVADC 340 (485)
Q Consensus 268 ~~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~~~~~d~ 340 (485)
...-.+.+++.+... ...+.||.|+|.|+++..+...+--+|..+|+.+..++.|++.+... ....++.+.-+
T Consensus 34 Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL 113 (218)
T PF05891_consen 34 DIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL 113 (218)
T ss_dssp HHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G
T ss_pred HHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH
Confidence 345566777776443 34689999999999999776655459999999999999999887642 23456777777
Q ss_pred CCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 341 TKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 341 ~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
++...+.++||+|++-+++.|+. |..++|+++...|+|||.+++-+........ .+. ...+.-..+.+.++++
T Consensus 114 Q~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~--~~D---~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 114 QDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD--EFD---EEDSSVTRSDEHFREL 188 (218)
T ss_dssp GG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE--EEE---TTTTEEEEEHHHHHHH
T ss_pred hhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc--ccC---CccCeeecCHHHHHHH
Confidence 77654457999999999999996 5778999999999999999998765443210 000 0011123467889999
Q ss_pred HHhCCCeEEEEeec
Q 043471 419 LKDAGFVDIIAEDR 432 (485)
Q Consensus 419 l~~aGf~~~~~~~~ 432 (485)
+++||++++..+..
T Consensus 189 F~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHCT-EEEEEEE-
T ss_pred HHHcCCEEEEeccc
Confidence 99999999876543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=126.23 Aligned_cols=135 Identities=21% Similarity=0.161 Sum_probs=103.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
+.+.....++......++.+|||+|||+|.++..++..+.+|+|+|+++.|++.|+++... ..++.++++|+.+ ++
T Consensus 166 l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~--l~ 243 (329)
T TIGR01177 166 MDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATK--LP 243 (329)
T ss_pred CCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhc--CC
Confidence 4455566677766777889999999999999988888899999999999999998876532 2358899999988 55
Q ss_pred CCCCCeeEEEhhhhhh-------ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 116 FSEDSVDMMFSNWLLM-------YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~-------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
+++++||+|+++-.+. +.......++++++.++|+|||++++..+.. ..+...++
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~------------------~~~~~~~~ 305 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR------------------IDLESLAE 305 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC------------------CCHHHHHh
Confidence 5678999999973221 1111225789999999999999998865421 23456677
Q ss_pred hcce
Q 043471 189 ECQI 192 (485)
Q Consensus 189 ~~~~ 192 (485)
++|+
T Consensus 306 ~~g~ 309 (329)
T TIGR01177 306 DAFR 309 (329)
T ss_pred hcCc
Confidence 8787
|
This family is found exclusively in the Archaea. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=115.98 Aligned_cols=111 Identities=23% Similarity=0.244 Sum_probs=89.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.....++..+.+.++.+|||+|||+|..+..+++.. .+++++|+++.+++.|++++...+ .++++..+|..+...+.+
T Consensus 65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 143 (212)
T PRK00312 65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYA 143 (212)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCC
Confidence 455677778888899999999999999998888764 599999999999999999886543 358999999865432347
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||+|++...++++ .+.+.+.|+|||++++...
T Consensus 144 ~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 144 PFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 89999998876655 3567899999999998743
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=114.97 Aligned_cols=98 Identities=19% Similarity=0.245 Sum_probs=76.3
Q ss_pred cEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh
Q 043471 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~ 135 (485)
.++|+|||+|..++.++....+|+|+|+|+.|++.|++....- .+...-..+-...++.-.++++|+|+|..++|++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd- 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD- 114 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc-
Confidence 8999999999889999999899999999999999998864311 12222222222233545589999999999999998
Q ss_pred HHHHHHHHHHHhhcccCc-EEEE
Q 043471 136 KEVEKLAERMVKWLKVGG-YIFF 157 (485)
Q Consensus 136 ~~~~~~l~~~~~~L~pgG-~l~~ 157 (485)
.++++++++|+||+.| .+.+
T Consensus 115 --le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 115 --LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred --hHHHHHHHHHHcCCCCCEEEE
Confidence 4579999999999988 5444
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=114.14 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=98.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CC--eEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--EN--VKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~--~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+++++.++++.... .+ +.++++|+.+. +..+
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~~~~ 89 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---FRGD 89 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---cccc
Confidence 34455555567889999999999999999999999999999999999988764321 22 88999987652 2455
Q ss_pred CeeEEEhhhhhhccC-------------------hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCCh
Q 043471 120 SVDMMFSNWLLMYLS-------------------DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (485)
+||+|+++..+...+ ......+++++.++|+|||.+++..... ...
T Consensus 90 ~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------~~~ 154 (188)
T PRK14968 90 KFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------TGE 154 (188)
T ss_pred CceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc---------------CCH
Confidence 899999865432211 1225678999999999999988864322 134
Q ss_pred hHHHHHhhhcceec
Q 043471 181 RFYSKVFKECQIQD 194 (485)
Q Consensus 181 ~~~~~~~~~~~~~~ 194 (485)
+.+...+.+.||..
T Consensus 155 ~~l~~~~~~~g~~~ 168 (188)
T PRK14968 155 DEVLEYLEKLGFEA 168 (188)
T ss_pred HHHHHHHHHCCCee
Confidence 56778888888754
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.6e-12 Score=106.27 Aligned_cols=137 Identities=22% Similarity=0.318 Sum_probs=106.2
Q ss_pred HHHHHHHHcC---CCCCC-EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC
Q 043471 271 TTKEFVAKLD---LKPGQ-KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK 343 (485)
Q Consensus 271 ~~~~~~~~~~---~~~~~-~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~ 343 (485)
.+..+.+... +.... +|||+|||.|.++..|++.. ...++|+|.|+.+++.|+..+. +..+.|+|.+.|+.+.
T Consensus 51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 3344444433 34333 99999999999999999874 4469999999999999987765 4445599999999987
Q ss_pred CCCCCCccEEEEccccccc---CC-----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHH
Q 043471 344 TYPENSFDVIYSRDTILHI---QD-----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~---~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (485)
.+..++||+|+--.++-.+ ++ +...+..+.++|+|||+++|+.. -++.+++
T Consensus 131 ~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC---------------------N~T~dEL 189 (227)
T KOG1271|consen 131 DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC---------------------NFTKDEL 189 (227)
T ss_pred cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec---------------------CccHHHH
Confidence 7777899999987766554 12 34568889999999999999842 3467889
Q ss_pred HHHHHhCCCeEEE
Q 043471 416 GQMLKDAGFVDII 428 (485)
Q Consensus 416 ~~~l~~aGf~~~~ 428 (485)
.+.++..||+...
T Consensus 190 v~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 190 VEEFENFNFEYLS 202 (227)
T ss_pred HHHHhcCCeEEEE
Confidence 9999999997654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.1e-12 Score=118.87 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=99.2
Q ss_pred HHHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~ 345 (485)
..+..+++.+. ..+..+|||+|||+|.++..++... +.+++|+|+|+.+++.|++++...+ .+++++.+|+.+ ++
T Consensus 100 ~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~ 178 (284)
T TIGR00536 100 ELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PL 178 (284)
T ss_pred HHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cC
Confidence 34444554442 2333699999999999999999876 4799999999999999999886433 359999999876 34
Q ss_pred CCCCccEEEEcc-------------cccccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 346 PENSFDVIYSRD-------------TILHIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 346 ~~~~fD~i~~~~-------------~~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
+..+||+|+++. ++.|-+ ....+++++.+.|+|||++++....
T Consensus 179 ~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~------------ 246 (284)
T TIGR00536 179 AGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN------------ 246 (284)
T ss_pred cCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc------------
Confidence 445899999972 222222 2556789999999999999887321
Q ss_pred HHHhcCCCCCCHHHHHHHHH-hCCCeEEEE
Q 043471 401 YIKQRGYDLHDVKSYGQMLK-DAGFVDIIA 429 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~-~aGf~~~~~ 429 (485)
.....+.+++. +.||..+.+
T Consensus 247 ---------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 247 ---------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ---------cHHHHHHHHHHhcCCCceeEE
Confidence 12345667777 468866544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.9e-13 Score=108.53 Aligned_cols=103 Identities=25% Similarity=0.378 Sum_probs=84.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC--CCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT--YPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~ 359 (485)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++.. ...++++.++|+.+.. +++++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988547999999999999999998864 3457999999997764 678999999998877
Q ss_pred cccC--------CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQ--------DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6431 24678999999999999998874
|
... |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=111.73 Aligned_cols=114 Identities=22% Similarity=0.316 Sum_probs=92.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~ 348 (485)
-.+-+++.+....+.+|||+|||.|.++..+++.. ..+++-+|++..+++.|++++...+. +..+...|..+- .. +
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~-v~-~ 223 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP-VE-G 223 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccc-cc-c
Confidence 35567788887777799999999999999999987 57999999999999999999875432 225666666553 33 3
Q ss_pred CccEEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+||+|+|+..||--.+ -.+++++..+.|++||.|.|.-
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVa 266 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVA 266 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEE
Confidence 8999999999985532 2378999999999999998883
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.3e-12 Score=113.77 Aligned_cols=153 Identities=25% Similarity=0.348 Sum_probs=113.0
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---------C----CCCCe
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---------G----LKCSV 333 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---------~----~~~~i 333 (485)
.....+.++++.+..+++.+||..|||.|.-+..|+++ |.+|+|+|+|+.+++.+.+... . ...+|
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 34467778888888888889999999999999999998 8899999999999999854321 0 12367
Q ss_pred EEEEccCCCCCCCC-CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHhcCCCC
Q 043471 334 EFEVADCTKKTYPE-NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDL 409 (485)
Q Consensus 334 ~~~~~d~~~~~~~~-~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~ 409 (485)
++.++|+.+++... ++||+|+-..+|+.++ .+++..+.+.++|+|||.+++.......... .++ ..
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPP----------f~ 169 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPP----------FS 169 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS------------
T ss_pred EEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcC----------CC
Confidence 89999998875433 5799999999999884 6889999999999999995444433222111 111 12
Q ss_pred CCHHHHHHHHHhCCCeEEEEee
Q 043471 410 HDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+.+++.+++. .+|++..++.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 36788999998 8899887765
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-12 Score=117.80 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=89.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
..+.....+++.+...++.+|||||||+|..+..+++.+.+|+++|+++++++.|+++... ..++++..+|..+. +
T Consensus 62 ~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~- 139 (212)
T PRK00312 62 SQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKG-W- 139 (212)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccC-C-
Confidence 3445566778888888899999999999999998888877999999999999999987543 24699999997652 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 140 ~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 234789999998765544 3457889999999998543
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=123.66 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=92.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC--CCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK--TYPEN 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~--~~~~~ 348 (485)
..+++.+....+..+||||||+|.++..+|.+. +..++|+|+++.+++.|.+++...+ .++.++++|+..+ .++++
T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 356666666667799999999999999999986 5799999999999999988876433 4799999998654 46789
Q ss_pred CccEEEEcccccccCCH------HHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQDK------PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~------~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++|.|+++...-|...+ ..+++++.|+|+|||.+.+.+
T Consensus 192 s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 99999986554443222 689999999999999999874
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=117.38 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=85.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCee
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+..+...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++.... .+++++.+|+.+. +++++||
T Consensus 27 ~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~---~~~~~fD 103 (223)
T PRK14967 27 DALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA---VEFRPFD 103 (223)
T ss_pred HHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh---ccCCCee
Confidence 444445566788999999999999999998765 9999999999999988865322 2578888888652 3567999
Q ss_pred EEEhhhhhhccCh-------------------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 123 MMFSNWLLMYLSD-------------------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 123 ~v~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+|+++-.+..... .....+++++.++|+|||.+++....
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9999743221111 11456888999999999999985443
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=112.99 Aligned_cols=110 Identities=20% Similarity=0.213 Sum_probs=87.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
+.+++.+...++.+|||||||+|.++..+++++.+|+|+|+++.+++.++++....++++++.+|+.+ +++++.+||.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~--~~~~~~~~d~ 80 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALK--FDLPKLQPYK 80 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhc--CCccccCCCE
Confidence 56777787788889999999999999999999889999999999999999887655689999999988 4455667999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+++- .+|+..+....+++.. .+.++|.+++.
T Consensus 81 vi~n~-Py~~~~~~i~~~l~~~--~~~~~~~l~~q 112 (169)
T smart00650 81 VVGNL-PYNISTPILFKLLEEP--PAFRDAVLMVQ 112 (169)
T ss_pred EEECC-CcccHHHHHHHHHhcC--CCcceEEEEEE
Confidence 99874 4555543344444432 24588888775
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=117.31 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=80.4
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEEcccc--
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYSRDTI-- 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~-- 359 (485)
.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++... ..+++++++|+.+. +++++||+|+++...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCCC
Confidence 689999999999999999876 579999999999999999998643 34699999998652 345689999997321
Q ss_pred -----------cccCC------------HHHHHHHHHhcCCCCcEEEEE
Q 043471 360 -----------LHIQD------------KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 -----------~~~~~------------~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.|-+. ...+++++.+.|+|||++++.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11111 256789999999999999886
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.8e-13 Score=108.58 Aligned_cols=106 Identities=20% Similarity=0.284 Sum_probs=83.7
Q ss_pred CCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
|.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.+... .++++++++|+.+....+++++||+|+++-.+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 5689999999999999999998 8999999999999999987543 24799999999874323678999999998654
Q ss_pred hccC-h-----HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 131 MYLS-D-----KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 131 ~~~~-~-----~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.... . .....+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 3221 1 1256889999999999999988543
|
... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=121.27 Aligned_cols=113 Identities=20% Similarity=0.227 Sum_probs=88.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
+.+++.++.....+|||+|||+|.++..+++++ .+|+++|+|+.+++.|+++....+ ..+++.+|+... ..++
T Consensus 186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~----~~~~ 261 (342)
T PRK09489 186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD----IKGR 261 (342)
T ss_pred HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc----cCCC
Confidence 456676766556689999999999999999884 489999999999999988654322 356677776541 2578
Q ss_pred eeEEEhhhhhhccC---hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNWLLMYLS---DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~~~~~~~---~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
||+|+|+-.+|+.. ....+++++++.+.|+|||.+++...
T Consensus 262 fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 262 FDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99999998777532 23467999999999999999998544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=114.40 Aligned_cols=126 Identities=21% Similarity=0.252 Sum_probs=97.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.++.+|||+|||+|.++..++.+. +.+++|+|+++.|++.++++.. +++++++|+.+... +.+||+|+++..+.
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~-~~kFDlIIsNPPF~ 137 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES-NEKFDVVISNPPFG 137 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc-cCCCcEEEEcCCcc
Confidence 345699999999999998888765 5799999999999999998753 68899999987653 46899999999988
Q ss_pred ccCC--------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 361 HIQD--------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 361 ~~~~--------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
+.+. ..++++...++|+|+|.+++.--..+ . | ..-.++++++++++
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~------~---y-----~~sl~~~~y~~~l~ 203 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP------Y---Y-----DGTMKSNKYLKWSK 203 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc------c---c-----cccCCHHHHHHHHH
Confidence 7521 24567777889999998877721110 0 0 12346889999999
Q ss_pred hCCCeE
Q 043471 421 DAGFVD 426 (485)
Q Consensus 421 ~aGf~~ 426 (485)
++||.-
T Consensus 204 ~~g~~~ 209 (279)
T PHA03411 204 QTGLVT 209 (279)
T ss_pred hcCcEe
Confidence 999964
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7e-12 Score=109.84 Aligned_cols=101 Identities=21% Similarity=0.325 Sum_probs=77.1
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC--CeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC--SVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~--~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
.++|+|||+|..++.+++.+ -+|+|+|+|+.|++.|++....... .......++.++.-.+++.|+|+|..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-hhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 79999999998888888874 4999999999999999876542211 2233333344443347999999999999988
Q ss_pred CHHHHHHHHHhcCCCCc-EEEEEecc
Q 043471 364 DKPALFKSFFKWLKPGG-TVLISDYC 388 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG-~l~i~~~~ 388 (485)
|.+.++++++|+||+.| .+.+-.+.
T Consensus 114 dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 78999999999998876 55554443
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.5e-12 Score=117.21 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=79.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCeeE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
+.+...++.+|||+|||+|..+.++++. + ..|+++|+|+.|.+.....+....|+.++.+|+.... ..++.++||+
T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDv 205 (293)
T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDV 205 (293)
T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCE
Confidence 3456778899999999999999999998 3 4799999998755433333222268999999987531 2233468999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++... .++ ....++.++.+.|||||++++.
T Consensus 206 V~~Dva---~pd-q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 206 IFADVA---QPD-QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EEEeCC---Ccc-hHHHHHHHHHHhccCCCEEEEE
Confidence 998763 222 2446777899999999999994
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=110.46 Aligned_cols=110 Identities=15% Similarity=0.245 Sum_probs=85.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~~f 350 (485)
.+++.+.+.++.+|||+|||+|.++..+++.. +.+|+++|+|+.+++.+++++...+ .+++++.+|+.+. +.....+
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 46777788888999999999999999988654 5799999999999999999876433 3688998888542 2112346
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|.|+... ..+...+++++.++|+|||++++...
T Consensus 111 d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 7765532 23568899999999999999999854
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=111.33 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=85.8
Q ss_pred EEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcE
Q 043471 80 IALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154 (485)
Q Consensus 80 ~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 154 (485)
+|+|+|++|++.|+++... ..+++++++|+.+ +|+++++||+|++..+++|+++ ..+++++++|+|||||.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~--lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~ 76 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID--LPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSR 76 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh--CCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeE
Confidence 5899999999999876431 2379999999998 6788899999999999999987 66999999999999999
Q ss_pred EEEEeccCCCCCcc------------------ccCCCC--------CCCCChhHHHHHhhhcceecCC
Q 043471 155 IFFRESCFHQSGDS------------------KRKHNP--------THYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 155 l~~~~~~~~~~~~~------------------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
+++.+......... ...... ..+.+++.+.++++++||+...
T Consensus 77 l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~ 144 (160)
T PLN02232 77 VSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSAC 144 (160)
T ss_pred EEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcce
Confidence 99987764321100 000001 1233677788889999996654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=120.43 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCC-CCCCCC----CccE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTK-KTYPEN----SFDV 352 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~-~~~~~~----~fD~ 352 (485)
.++.+|||+|||+|..+..+++.. +.+|+++|+|+.|++.|++++... ..++.++++|+.+ .+++.. ...+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 466799999999999999999886 579999999999999999887532 2356778999976 344332 2334
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+++..++++++ +...+|++++++|+|||.++|.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 44456677774 4667899999999999999875
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=116.21 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=89.7
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
.........+|||+|||+|.+++.++++ . .+|+|||+.+.+.+.|++.... ..+++++++|+..+.-.....+||
T Consensus 38 ~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD 117 (248)
T COG4123 38 AFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFD 117 (248)
T ss_pred hhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccC
Confidence 3444555789999999999999999998 4 7999999999999999987543 358999999999865445556899
Q ss_pred EEEhhhh----------------hhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWL----------------LMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~----------------~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+||=- -+|...-..+++++.+.++|||||.+++...
T Consensus 118 ~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 118 LIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred EEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 9999721 1233333477999999999999999999543
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-12 Score=111.06 Aligned_cols=108 Identities=23% Similarity=0.298 Sum_probs=91.9
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 119 (485)
....+++.+...++.+|||||||+|+.+..|++...+|+.+|..++..+.|++++... .|+..+++|...- + .+..
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G-~-~~~a 137 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG-W-PEEA 137 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC-C-CCCC
Confidence 5568889999999999999999999999999999889999999999999999986543 4799999998752 2 2457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.||.|+.......+|+ .+.+.|+|||++++-.
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEE
Confidence 9999999887777765 3677899999999953
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-12 Score=118.87 Aligned_cols=130 Identities=27% Similarity=0.339 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~ 348 (485)
..++++.+ ..++.+|||+|||+|.+++..++. |+ +|+|+|++|.+++.|++++.- ...++.+ ....+ ...+
T Consensus 151 cl~~l~~~-~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~--~~~~ 224 (295)
T PF06325_consen 151 CLELLEKY-VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSED--LVEG 224 (295)
T ss_dssp HHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSC--TCCS
T ss_pred HHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecc--cccc
Confidence 33444444 566789999999999999988876 55 899999999999999999863 3344433 22222 2358
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|+++=... -...++..+.++|+|||+++++.... ...+.+.+.+++ ||++++
T Consensus 225 ~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~--------------------~~~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 225 KFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE--------------------EQEDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp -EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG--------------------GGHHHHHHHHHT-TEEEEE
T ss_pred cCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH--------------------HHHHHHHHHHHC-CCEEEE
Confidence 999999975432 23567788999999999999995432 124677888877 999877
Q ss_pred Eee
Q 043471 429 AED 431 (485)
Q Consensus 429 ~~~ 431 (485)
...
T Consensus 281 ~~~ 283 (295)
T PF06325_consen 281 ERE 283 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-12 Score=114.76 Aligned_cols=112 Identities=27% Similarity=0.370 Sum_probs=88.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~ 345 (485)
+.....+++.+.++++++|||||||+|..+..++...+ ..|+++|+.+..++.|++++..++ .++.++.+|...-..
T Consensus 58 P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~ 137 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP 137 (209)
T ss_dssp HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred HHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence 46778899999999999999999999999998887654 379999999999999999987544 389999999866433
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+||.|++..+...++ ..+.+.|++||++++--
T Consensus 138 ~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 138 EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 457899999998886554 45677899999998863
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=113.95 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=98.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
...+.+|||+|||+|.++..++++ +.+|+|+|+++.|++.++++. ++++++++|+.+.. .+.+||+|+++-.
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---~~v~~v~~D~~e~~---~~~kFDlIIsNPP 135 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---PEAEWITSDVFEFE---SNEKFDVVISNPP 135 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cCCEEEECchhhhc---ccCCCcEEEEcCC
Confidence 344679999999999999888776 469999999999999999864 47899999998743 3468999999887
Q ss_pred hhccChHH------------------HHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 130 LMYLSDKE------------------VEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 130 ~~~~~~~~------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+++.+..+ +.++++....+|+|+|.+++.-... ...+.-..+..|+.++++.|
T Consensus 136 F~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~---------~~y~~sl~~~~y~~~l~~~g 206 (279)
T PHA03411 136 FGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR---------PYYDGTMKSNKYLKWSKQTG 206 (279)
T ss_pred ccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc---------ccccccCCHHHHHHHHHhcC
Confidence 77754321 2456677788999999877752211 11122237889999999999
Q ss_pred eecCCC
Q 043471 192 IQDASG 197 (485)
Q Consensus 192 ~~~~~g 197 (485)
|....|
T Consensus 207 ~~~~~~ 212 (279)
T PHA03411 207 LVTYAG 212 (279)
T ss_pred cEecCC
Confidence 965544
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-12 Score=113.69 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=86.7
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
.+.+..++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.++++... ..+++++.+|+.+. +.
T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~-~~ 104 (196)
T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPEC-LA 104 (196)
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHH-Hh
Confidence 344455788888888899999999999999999875 46999999999999999886532 24789999998542 11
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.....+|.|+... ..+ ...+++++.+.|+|||.+++....
T Consensus 105 ~~~~~~d~v~~~~----~~~--~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 105 QLAPAPDRVCIEG----GRP--IKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred hCCCCCCEEEEEC----CcC--HHHHHHHHHHhcCCCeEEEEEeec
Confidence 1123457665432 122 568999999999999999997553
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.3e-12 Score=116.95 Aligned_cols=116 Identities=22% Similarity=0.279 Sum_probs=83.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
..++.+|||+|||+|.++..+++.|.. |+|+|+|+.+++.|+++.... ++. .... ++..+.+||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~-~~~-~~~~-----~~~~~~~fD~Vvani~~ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN-GVE-LNVY-----LPQGDLKADVIVANILA 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc-CCC-ceEE-----EccCCCCcCEEEEcCcH
Confidence 346889999999999999988887764 999999999999999875432 221 0001 11112279999987432
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.....++.++.++|+|||+++++..... ..+.+...+++.||..
T Consensus 190 -----~~~~~l~~~~~~~LkpgG~lilsgi~~~---------------~~~~v~~~l~~~Gf~~ 233 (250)
T PRK00517 190 -----NPLLELAPDLARLLKPGGRLILSGILEE---------------QADEVLEAYEEAGFTL 233 (250)
T ss_pred -----HHHHHHHHHHHHhcCCCcEEEEEECcHh---------------hHHHHHHHHHHCCCEE
Confidence 2256789999999999999999765321 3456777788888754
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=124.89 Aligned_cols=124 Identities=18% Similarity=0.269 Sum_probs=92.9
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
+.+|||+|||+|.++..++... +.+++++|+|+.+++.|++++.. +..+++++.+|+.+. ++.++||+|+|+....
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 4689999999999999998765 67999999999999999999763 335789999997542 3456899999964221
Q ss_pred --------------ccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 361 --------------HIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 361 --------------~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
|-+ ....+++++.++|+|||.+++.. . ....+.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g--------------------~~q~~~ 276 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-G--------------------FKQEEA 276 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-C--------------------CchHHH
Confidence 111 13446788899999999998862 1 112456
Q ss_pred HHHHHHhCCCeEEEE
Q 043471 415 YGQMLKDAGFVDIIA 429 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~ 429 (485)
+.+++++.||..+.+
T Consensus 277 v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 277 VTQIFLDHGYNIESV 291 (506)
T ss_pred HHHHHHhcCCCceEE
Confidence 778888888876543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-12 Score=118.82 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=108.6
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK 90 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~ 90 (485)
.+..|++.++....|++|+.|.-+ ....+..+++.-...+++.|||||||+|.++.+-|+.|+ +|+|+|.|.-+ +
T Consensus 21 ~~~~Yf~sY~~~~iheeML~D~VR---t~aYr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~ 96 (346)
T KOG1499|consen 21 SDDYYFDSYAHFGIHEEMLKDSVR---TLAYRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-D 96 (346)
T ss_pred hhhhhhhhhhchHHHHHHHhhhhh---HHHHHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-H
Confidence 445667777777778888777543 335666777776778899999999999999999999986 89999988766 6
Q ss_pred HHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEE
Q 043471 91 KNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 91 ~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.|++... ....++++++.+++..+| .+++|+|++-|+-+++- +..+..++-.--+.|+|||.++-+
T Consensus 97 ~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 97 FARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred HHHHHHHhcCccceEEEeecceEEEecC--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 6666532 223689999999996554 68999999988765543 333667777777999999988764
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=117.40 Aligned_cols=111 Identities=23% Similarity=0.310 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.++++.+|||+|||+|.++..+++..+ ..|+++|+++.+++.|++++...+ .++.++.+|+...+..
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 4556777888888899999999999999999998764 379999999999999999876443 4688999998776545
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.++||+|++...+.+++ ..+.+.|+|||++++..
T Consensus 147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 57899999986655442 35678999999988853
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=120.46 Aligned_cols=100 Identities=16% Similarity=0.267 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||+|||+|.++..+++.|. +|+|+|+++.+++.|+++.... .++.+..++.. ...+++||+|+++.
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~----~~~~~~fDlVvan~ 233 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLE----QPIEGKADVIVANI 233 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccc----cccCCCceEEEEec
Confidence 4578999999999999999888765 8999999999999999875421 24555555532 23457999999975
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
... ....++.++.++|+|||+++++...
T Consensus 234 ~~~-----~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 234 LAE-----VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CHH-----HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 432 2457899999999999999997653
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=115.40 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=96.3
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~ 118 (485)
...+++.+. ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++++++.+|+.+. +++
T Consensus 77 ~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~ 152 (251)
T TIGR03534 77 VEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP---LPG 152 (251)
T ss_pred HHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc---CcC
Confidence 344455544 34568999999999999999987 56999999999999999886532 23699999998652 356
Q ss_pred CCeeEEEhhhhh------hccChH------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCC
Q 043471 119 DSVDMMFSNWLL------MYLSDK------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNP 174 (485)
Q Consensus 119 ~~~D~v~~~~~~------~~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 174 (485)
++||+|+++-.+ +.+... ....+++++.++|+|||.+++...
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------------- 218 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------------- 218 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------------
Confidence 899999985321 111111 124788999999999999998532
Q ss_pred CCCCChhHHHHHhhhcceec
Q 043471 175 THYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (485)
+...+.+.+++++.||..
T Consensus 219 --~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFAD 236 (251)
T ss_pred --ccHHHHHHHHHHhCCCCc
Confidence 124567888888888744
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=119.71 Aligned_cols=120 Identities=22% Similarity=0.324 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ +++++++|+.+..++ ..++||+|+|+=
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNP-- 327 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNP-- 327 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccc-cCCCccEEEECC--
Confidence 4569999999999999999875 5789999999999999998754323 799999998663222 245899999973
Q ss_pred hccCh-------------------------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHH
Q 043471 131 MYLSD-------------------------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK 185 (485)
Q Consensus 131 ~~~~~-------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
.+++. .-+..+++.+.+.|+|||.+++.. .. ...+.+.+
T Consensus 328 PYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G~---------------~Q~e~V~~ 391 (423)
T PRK14966 328 PYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-GF---------------DQGAAVRG 391 (423)
T ss_pred CCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-Cc---------------cHHHHHHH
Confidence 22211 114477778889999999988732 21 14566778
Q ss_pred Hhhhcce
Q 043471 186 VFKECQI 192 (485)
Q Consensus 186 ~~~~~~~ 192 (485)
.+++.|+
T Consensus 392 ll~~~Gf 398 (423)
T PRK14966 392 VLAENGF 398 (423)
T ss_pred HHHHCCC
Confidence 8877776
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.7e-11 Score=110.14 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=97.4
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC--C
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY--P 346 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~--~ 346 (485)
.++.++..+. ..++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ +++.++|+.+... .
T Consensus 73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--~~~~~~D~~~~l~~~~ 150 (251)
T TIGR03704 73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--GTVHEGDLYDALPTAL 150 (251)
T ss_pred HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CEEEEeechhhcchhc
Confidence 3344444333 2234589999999999999998765 5699999999999999999986543 5788888865311 1
Q ss_pred CCCccEEEEcccccc------c----------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 347 ENSFDVIYSRDTILH------I----------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~------~----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
.++||+|+++....- + .| ...+++.+.++|+|||++++...
T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~------------- 217 (251)
T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS------------- 217 (251)
T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence 357999999864321 1 01 34677888899999999998731
Q ss_pred HHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 401 YIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.....++.++|++.||+.....
T Consensus 218 --------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 218 --------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred --------cchHHHHHHHHHHCCCCceeeE
Confidence 1123567888999999765443
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-12 Score=105.92 Aligned_cols=114 Identities=27% Similarity=0.341 Sum_probs=93.2
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
+.|...+..|.+.++++++|||||||..+..++.. ..+|+++|-++++++..+++... .+|+..+.+++.+. ++
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~-L~- 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA-LP- 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh-hc-
Confidence 55667789999999999999999999999999954 56999999999999887776443 46999999998764 22
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...++|.|+..+. . . .+.+++.+...|||||.++..-...
T Consensus 99 ~~~~~daiFIGGg-~---~--i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 99 DLPSPDAIFIGGG-G---N--IEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCCCCEEEECCC-C---C--HHHHHHHHHHHcCcCCeEEEEeecH
Confidence 2237999999875 2 2 5679999999999999999976543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=119.43 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=91.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--CCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--YPENS 349 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 349 (485)
...+..+...++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...+.++++.++|+.+.+ ++.++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3445566778899999999999999999998763 69999999999999999998866656788999998753 34578
Q ss_pred ccEEEEcccc------cc------cCC----------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 350 FDVIYSRDTI------LH------IQD----------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 350 fD~i~~~~~~------~~------~~~----------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
||.|++.... .+ ... ..++++.+.++|||||++++++...
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9999964321 11 111 2468999999999999999886543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.4e-11 Score=120.03 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=92.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeE--EEEccCCCCCC--C
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVE--FEVADCTKKTY--P 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~--~~~~d~~~~~~--~ 346 (485)
...+...+...++.+|||+|||+|..+..+++.. +.+++++|+++.+++.+++++...+..+. +..+|....+. +
T Consensus 227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 3455566778889999999999999999999876 37999999999999999999875543333 35666654433 4
Q ss_pred CCCccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 043471 347 ENSFDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSFGT 393 (485)
Q Consensus 347 ~~~fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 393 (485)
.++||.|++. +++.+.++ ..++|+++.++|||||+++.++.......
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~E 375 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEE 375 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhh
Confidence 5789999963 34544443 36789999999999999999976654433
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=103.90 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=87.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
+.+++.+.+.++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++.. ..+++++.+|+.+.++++.+||.
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-ADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-CCCEEEEECchhcCCccccCCCE
Confidence 56778888888899999999999999999998 67999999999999999998865 34799999999998877777999
Q ss_pred EEEcccccccCCHHHHHHHHHhc--CCCCcEEEEEe
Q 043471 353 IYSRDTILHIQDKPALFKSFFKW--LKPGGTVLISD 386 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~--LkpgG~l~i~~ 386 (485)
|+++..++ + ....+..+.+. +.++|.++++.
T Consensus 81 vi~n~Py~-~--~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVGNLPYN-I--STPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred EEECCCcc-c--HHHHHHHHHhcCCCcceEEEEEEH
Confidence 99976554 3 23444444432 45888888873
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=112.88 Aligned_cols=120 Identities=19% Similarity=0.272 Sum_probs=87.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcCCCCCeE----EEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNGHFENVK----FMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~----~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+|.+|||+|||+|.+++..++.|+. |+|+|+.|.+++.|+++... .++. ....+... . ...++||+|++|
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~-N~v~~~~~~~~~~~~~--~-~~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARL-NGVELLVQAKGFLLLE--V-PENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHH-cCCchhhhcccccchh--h-cccCcccEEEeh
Confidence 37899999999999999999999885 99999999999999986543 1222 22222222 1 133699999998
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
- + .+ ....+...+++.|+|||+++++-.... ..+...+.+++.||....
T Consensus 237 I-L---A~-vl~~La~~~~~~lkpgg~lIlSGIl~~---------------q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 237 I-L---AE-VLVELAPDIKRLLKPGGRLILSGILED---------------QAESVAEAYEQAGFEVVE 285 (300)
T ss_pred h-h---HH-HHHHHHHHHHHHcCCCceEEEEeehHh---------------HHHHHHHHHHhCCCeEeE
Confidence 4 2 22 256889999999999999999864321 345566777777875443
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-11 Score=102.91 Aligned_cols=163 Identities=19% Similarity=0.268 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC-
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP- 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~- 346 (485)
.+.++++.+-...+.+|||||||||..+.++++.+ +....-.|+.+....-.+..+. ++..-..-+..|+.+.+.+
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 34455555533334369999999999999999988 6799999999888765555443 2222223345677665332
Q ss_pred -------CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCC----ChhHHHHHHhc--CCCCCC
Q 043471 347 -------ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP----SVEFSEYIKQR--GYDLHD 411 (485)
Q Consensus 347 -------~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~--~~~~~~ 411 (485)
.++||+|+|.+++|-.+ ..+.+|+.+.++|+|||.|++-.+....+.. ...|...++.. .+-+.+
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD 172 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRD 172 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccC
Confidence 35899999999998774 5678899999999999999998766554422 23344444432 234678
Q ss_pred HHHHHHHHHhCCCeEEEEeecc
Q 043471 412 VKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.+++.++..++|++..+..++.
T Consensus 173 ~e~v~~lA~~~GL~l~~~~~MP 194 (204)
T PF06080_consen 173 IEDVEALAAAHGLELEEDIDMP 194 (204)
T ss_pred HHHHHHHHHHCCCccCcccccC
Confidence 8999999999999987665544
|
The function of this family is unknown. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=96.23 Aligned_cols=100 Identities=31% Similarity=0.494 Sum_probs=84.6
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-CCCCCeEEEEccCCCCCC-CCCCccEEEEcccccc-c
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI-GLKCSVEFEVADCTKKTY-PENSFDVIYSRDTILH-I 362 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~~~-~ 362 (485)
+|+|+|||.|.++..+++..+.+++++|+++.+++.+++... ....++.+...|..+... ..++||+|++..++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 489999999999999988446799999999999999984332 334578889999887653 4578999999999998 7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEE
Q 043471 363 QDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 363 ~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.....+++.+.+.|+|||.+++.
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=113.24 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=79.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .+++++++|+.+. +++++||+|+++
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~---~~~~~fD~Iv~N 196 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA---LPGRKYDLIVSN 196 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc---cCCCCccEEEEC
Confidence 44578999999999999999987 469999999999999999875422 3699999998642 245689999986
Q ss_pred hh-------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEE
Q 043471 128 WL-------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 128 ~~-------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
=. ..|-+. .....+++++.+.|+|||.+++.
T Consensus 197 PPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 10 111111 12467899999999999999884
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=105.58 Aligned_cols=133 Identities=28% Similarity=0.428 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~ 346 (485)
-+..++..+++.||++|||.|.|+|.++.+|+...+ .+|+..|+-++..+.|++|+. ++.+++++..+|+.+.-.+
T Consensus 82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 355788889999999999999999999999997553 599999999999999999987 4556699999999887655
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+ .||+|+. -++++-.+++.++++|+|||.+++-.++-. -.....+.|++.||..
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~P~ve--------------------Qv~kt~~~l~~~g~~~ 215 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYSPTVE--------------------QVEKTVEALRERGFVD 215 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEcCCHH--------------------HHHHHHHHHHhcCccc
Confidence 4 8999987 568999999999999999999988743211 1234456667778877
Q ss_pred EEE
Q 043471 427 IIA 429 (485)
Q Consensus 427 ~~~ 429 (485)
++.
T Consensus 216 ie~ 218 (256)
T COG2519 216 IEA 218 (256)
T ss_pred hhh
Confidence 654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=119.39 Aligned_cols=116 Identities=26% Similarity=0.307 Sum_probs=92.3
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC----CC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT----YP 346 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~----~~ 346 (485)
.+...+...++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...+ .+++++++|+...+ +.
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 34445677889999999999999999999875 3589999999999999999987554 36899999998765 34
Q ss_pred CCCccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 347 ENSFDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 347 ~~~fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++||.|++. +++.+-++ ..++|.++.++|||||+++.++...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 5789999973 34443333 4678999999999999999886543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=113.15 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=95.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..++..+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++.. ...+++++.+|+... ++++
T Consensus 98 ~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~---~~~~ 174 (275)
T PRK09328 98 EWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEP---LPGG 174 (275)
T ss_pred HHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCc---CCCC
Confidence 344444455667899999999999999999874 799999999999999998754 234799999998542 2357
Q ss_pred CeeEEEhhhhh------hccC------------------hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCC
Q 043471 120 SVDMMFSNWLL------MYLS------------------DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPT 175 (485)
Q Consensus 120 ~~D~v~~~~~~------~~~~------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~ 175 (485)
+||+|+++-.. +.+. -.....+++++.++|+|||++++... .
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~------------- 240 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-Y------------- 240 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-c-------------
Confidence 99999986211 1011 01246788899999999999998421 1
Q ss_pred CCCChhHHHHHhhhccee
Q 043471 176 HYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~ 193 (485)
...+.+..++.+.||.
T Consensus 241 --~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 241 --DQGEAVRALLAAAGFA 256 (275)
T ss_pred --hHHHHHHHHHHhCCCc
Confidence 1345577888887774
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-12 Score=111.44 Aligned_cols=110 Identities=20% Similarity=0.265 Sum_probs=84.0
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.+.....+++.+..++|.+|||||||+|+.+..|++. + ..|+++|+.+..++.|++++.. ..|+.++++|...-
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g- 135 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEG- 135 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGT-
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhc-
Confidence 3456678999999999999999999999999999987 3 3699999999999999998653 34899999998752
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+ .....||.|++......++. .+.+.|++||++++-
T Consensus 136 ~-~~~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 136 W-PEEAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAP 171 (209)
T ss_dssp T-GGG-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEE
T ss_pred c-ccCCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEE
Confidence 2 24568999999877655543 377789999999984
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.5e-11 Score=109.10 Aligned_cols=139 Identities=23% Similarity=0.275 Sum_probs=105.8
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
..+.+...+.+..+|||||+|+|.++..+++++ +.+++..|. |.+++.+++ ..+++++.+|+. .++|. +|
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f-~~~P~--~D 160 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFF-DPLPV--AD 160 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TT-TCCSS--ES
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-----ccccccccccHH-hhhcc--cc
Confidence 455666677777899999999999999999988 789999999 888888887 458999999998 66765 99
Q ss_pred EEEEcccccccCC--HHHHHHHHHhcCCCC--cEEEEEecccCCCCCChhHH---HHH-----HhcCCCCCCHHHHHHHH
Q 043471 352 VIYSRDTILHIQD--KPALFKSFFKWLKPG--GTVLISDYCKSFGTPSVEFS---EYI-----KQRGYDLHDVKSYGQML 419 (485)
Q Consensus 352 ~i~~~~~~~~~~~--~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~l 419 (485)
+|+..+++|+.++ -..+|+++++.|+|| |+++|.+....+........ ... ...+...+|.++|.++|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~~~ll 240 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEWEALL 240 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHHHHHh
Confidence 9999999999964 557899999999999 99999998766655443322 111 01123456788888877
Q ss_pred H
Q 043471 420 K 420 (485)
Q Consensus 420 ~ 420 (485)
+
T Consensus 241 ~ 241 (241)
T PF00891_consen 241 K 241 (241)
T ss_dssp H
T ss_pred C
Confidence 4
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=115.35 Aligned_cols=111 Identities=20% Similarity=0.255 Sum_probs=85.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
++.....+++.+...++.+|||||||+|.++..+++.. ..|+|+|+++++++.|+++... ..++.++++|+..
T Consensus 65 ~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~-- 142 (322)
T PRK13943 65 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYY-- 142 (322)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhh--
Confidence 34445667788888888999999999999999999863 3699999999999999886532 2479999999876
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.+...++||+|++.....+++ ..+.+.|+|||.+++..
T Consensus 143 ~~~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cccccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 333446899999875444332 34678999999988853
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.8e-11 Score=110.38 Aligned_cols=171 Identities=16% Similarity=0.272 Sum_probs=117.0
Q ss_pred eEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCch-HHHHHHHHHcCCCCC
Q 043471 212 AYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGGI-ETTKEFVAKLDLKPG 284 (485)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~~~~~ 284 (485)
..+...+......++...+....-..+..|+....... +..++..+. ...||++... +.+...+.. ..+.
T Consensus 40 i~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~~~~-~~~e~~~li~~ltineT~FFRd~~~f~~L~~~~~~--~~~~ 116 (287)
T PRK10611 40 IVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLESNQ-NSAEWQAFINALTTNLTAFFREAHHFPILAEHARR--RSGE 116 (287)
T ss_pred CCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCC-CHHHHHHHHHHhhCCCCCccCCcHHHHHHHHHHHh--cCCC
Confidence 34555566667777777777777677888887765432 122333322 2345554432 333333322 1234
Q ss_pred CEEEEECCCCCh----hHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhc----------------------------
Q 043471 285 QKVLDVGCGIGG----GDFYMADKF-----DVHVVGIDLSINMISFALERAI---------------------------- 327 (485)
Q Consensus 285 ~~vLDiGcG~G~----~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~---------------------------- 327 (485)
.+|+..||+||. +++.+.+.. ..+|+|+|+|+.+++.|++-.-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 799999999995 444454432 3689999999999999986521
Q ss_pred ----CCCCCeEEEEccCCCCCCC-CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 ----GLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 ----~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+...|.|.+.|+.+.+++ .+.||+|+|.+++.|++ ...++++++++.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 0224678889999875543 57899999999999994 5888999999999999998876
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.8e-11 Score=105.57 Aligned_cols=139 Identities=21% Similarity=0.202 Sum_probs=96.6
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
..++||||+|.|.++..++..+. +|+++|.|+.|....+++ +++++ +..+..-.+.+||+|.|.+++-.-.
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~-~v~aTE~S~~Mr~rL~~k------g~~vl--~~~~w~~~~~~fDvIscLNvLDRc~ 165 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK-EVYATEASPPMRWRLSKK------GFTVL--DIDDWQQTDFKFDVISCLNVLDRCD 165 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc-eEEeecCCHHHHHHHHhC------CCeEE--ehhhhhccCCceEEEeehhhhhccC
Confidence 46899999999999999998764 899999999998777664 33433 3333332356899999999999889
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCC-----C-CChhHHHHHHhcCCCC-CCHHHHHHHHHhCCCeEEEEee
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFG-----T-PSVEFSEYIKQRGYDL-HDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|..+|+.+++.|+|+|++++.-..+..+ . ....-.+.+...+..+ ...+.+.+.|+.+||+++.+..
T Consensus 166 ~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 166 RPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred CHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999999999884322110 0 0001111111111111 1123444899999999988754
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=108.30 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=91.2
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+|||+|||+|.++..++... .++|+|+|+|+.+++.|++++..++ .++.++.+|..+- . .++||+|+++...---.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~~ 190 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPAE 190 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-c-CCceeEEEeCCCCCCCc
Confidence 79999999999999999986 4699999999999999999988655 5566666665442 2 24899999984321100
Q ss_pred -------------------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 364 -------------------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 364 -------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
-...++.++.+.|+|||.+++.. .+...+.+.++
T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~---------------------g~~q~~~v~~~ 249 (280)
T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI---------------------GLTQGEAVKAL 249 (280)
T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE---------------------CCCcHHHHHHH
Confidence 14556888999999999998873 12235778899
Q ss_pred HHhCC-CeEEEE
Q 043471 419 LKDAG-FVDIIA 429 (485)
Q Consensus 419 l~~aG-f~~~~~ 429 (485)
+.+.| |..+..
T Consensus 250 ~~~~~~~~~v~~ 261 (280)
T COG2890 250 FEDTGFFEIVET 261 (280)
T ss_pred HHhcCCceEEEE
Confidence 99999 655443
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-11 Score=94.62 Aligned_cols=100 Identities=22% Similarity=0.328 Sum_probs=81.8
Q ss_pred cEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHc--CCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 57 TVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVN--GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
+|+|+|||+|..+..+++ ...+++++|+++++++.+++.. ....+++++.+|+.+... ...++||+|+++.+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEccceeeh
Confidence 589999999999998887 4679999999999999888432 223578999999987432 245789999999988884
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
......+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 223779999999999999999885
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=108.24 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh--
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL-- 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~-- 130 (485)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... +++++++|+.+.......++||+|+++=-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 458999999999999999876 568999999999999999876432 368899998653110113579999987311
Q ss_pred ----hccChH------------------HHHHHHHHHHhhcccCcEEEEEe
Q 043471 131 ----MYLSDK------------------EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ----~~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
..++++ ....+++.+.++|+|||.+++..
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111111 13478888889999999999853
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=115.62 Aligned_cols=116 Identities=26% Similarity=0.393 Sum_probs=90.6
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCCCc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPENSF 350 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~~f 350 (485)
+...+.+.++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+ .++++.++|...++ +..++|
T Consensus 229 ~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 229 VPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 3345577889999999999999999999876 4699999999999999999987554 25889999988765 445789
Q ss_pred cEEEEcccc---ccc---C----------------CHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 351 DVIYSRDTI---LHI---Q----------------DKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 351 D~i~~~~~~---~~~---~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|.|++.... ..+ + ...++|.++.+.|||||.++.++....
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999973221 111 1 135678999999999999999876543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.9e-11 Score=119.08 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=89.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
......+.+.++.+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++....+ +++++++|+...+..++.++
T Consensus 234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 345566777889999999999999999999874 589999999999999988765433 57899999876322134578
Q ss_pred eeEEEh----hh--hhh------cc-ChH-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 121 VDMMFS----NW--LLM------YL-SDK-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 121 ~D~v~~----~~--~~~------~~-~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
||.|++ +. ++. +. ... ...+++..+.++|||||.+++++.+..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 376 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL 376 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999994 32 111 11 111 134789999999999999999876543
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7e-11 Score=112.09 Aligned_cols=101 Identities=22% Similarity=0.380 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--C-CCeEEEEeeccCCCCCCCCCCeeEEEhhh--
Q 043471 56 KTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--F-ENVKFMCADVTSPDLTFSEDSVDMMFSNW-- 128 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~-- 128 (485)
.+|||+|||+|.++..++... .+|+|+|+|+++++.|+++... . .+++++++|+.+. ++.++||+|+++-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~---~~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP---LAGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc---CcCCCccEEEECCCC
Confidence 689999999999999999873 5899999999999999987532 2 2599999998652 2345899999961
Q ss_pred -----------hhhccCh----------HHHHHHHHHHHhhcccCcEEEEEe
Q 043471 129 -----------LLMYLSD----------KEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 129 -----------~~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+..|-+. .....+++++.+.|+|||++++..
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222221 136688999999999999998853
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=104.61 Aligned_cols=136 Identities=24% Similarity=0.386 Sum_probs=104.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~ 345 (485)
.-+..++..+.+.||++|||.|.|+|.++..|+... ..+|+..|+.++..+.|++++. ++..++++.+.|+.+..+
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~ 106 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF 106 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence 345678889999999999999999999999999876 3599999999999999999987 455689999999986544
Q ss_pred C---CCCccEEEEcccccccCCHHHHHHHHHhcC-CCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 346 P---ENSFDVIYSRDTILHIQDKPALFKSFFKWL-KPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 346 ~---~~~fD~i~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
. +..+|.|+. -++++-.++..+.++| ||||++++-.++-. -.....+.|++
T Consensus 107 ~~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------Qv~~~~~~L~~ 161 (247)
T PF08704_consen 107 DEELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------QVQKTVEALRE 161 (247)
T ss_dssp STT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------------HHHHHHHHHHH
T ss_pred cccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------------HHHHHHHHHHH
Confidence 3 357999877 5689999999999999 89999987744321 13455677888
Q ss_pred CCCeEEEEe
Q 043471 422 AGFVDIIAE 430 (485)
Q Consensus 422 aGf~~~~~~ 430 (485)
.||..++..
T Consensus 162 ~gf~~i~~~ 170 (247)
T PF08704_consen 162 HGFTDIETV 170 (247)
T ss_dssp TTEEEEEEE
T ss_pred CCCeeeEEE
Confidence 999987653
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=117.88 Aligned_cols=114 Identities=22% Similarity=0.274 Sum_probs=88.4
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+..+...++.+|||+|||+|..+..+++.. +.+|+++|+|+.+++.+++++...+ .++++.++|+...+ ++++||
T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~-~~~~fD 320 (445)
T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS-PEEQPD 320 (445)
T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc-cCCCCC
Confidence 3345567788999999999999998888765 3599999999999999999887544 36899999998765 457899
Q ss_pred EEEEc------ccccccC----------------CHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSR------DTILHIQ----------------DKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~------~~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++- .++..-+ ....+|.++.+.|||||++++++...
T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 99962 1111111 13468999999999999999987554
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=100.89 Aligned_cols=129 Identities=20% Similarity=0.303 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCCC-CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKP-GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
..+..+++.+...| +..|-|+|||.+.++..+.. +.+|...|+-+. +-.+..+|+...|++++
T Consensus 58 nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva~--------------n~~Vtacdia~vPL~~~ 121 (219)
T PF05148_consen 58 NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVAP--------------NPRVTACDIANVPLEDE 121 (219)
T ss_dssp -HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S--------------STTEEES-TTS-S--TT
T ss_pred CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc--CceEEEeeccCC--------------CCCEEEecCccCcCCCC
Confidence 35667777775444 46899999999998876653 358999997332 22466799999999999
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+.|+++++.++.- .|...+++|+.|+|||||.|.|.+... ++.+.+...+.++..||+...
T Consensus 122 svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S------------------Rf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 122 SVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS------------------RFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp -EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG------------------G-S-HHHHHHHHHCTTEEEEE
T ss_pred ceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc------------------cCcCHHHHHHHHHHCCCeEEe
Confidence 9999999887754 589999999999999999999997643 344678888999999999887
Q ss_pred Eeecc
Q 043471 429 AEDRT 433 (485)
Q Consensus 429 ~~~~~ 433 (485)
.....
T Consensus 183 ~d~~n 187 (219)
T PF05148_consen 183 KDESN 187 (219)
T ss_dssp EE--S
T ss_pred cccCC
Confidence 54433
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.3e-11 Score=105.47 Aligned_cols=99 Identities=28% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------CCCCCCee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------TFSEDSVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------~~~~~~~D 122 (485)
..++.+|||+|||+|.++..++++. .+|+|+|+|+.+ ..++++++++|+.+.+. .++.++||
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4678899999999999999888763 369999999965 12578899999876321 13467899
Q ss_pred EEEhhhhhh--------ccC-hHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLM--------YLS-DKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~--------~~~-~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|++..+.+ |.. ....+.++.++.++|+|||.+++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 999865422 111 1124689999999999999999953
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=102.39 Aligned_cols=97 Identities=25% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------CCCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--------YPENS 349 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--------~~~~~ 349 (485)
.++++.+|||+|||+|.++..++++. ..+++++|+|+.+ .. .++++.++|+.+.+ ++.++
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~----~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI----ENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC----CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 46788999999999999999988875 3589999999865 11 25788888887642 45678
Q ss_pred ccEEEEccccc--------cc---CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTIL--------HI---QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~--------~~---~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||+|++..+.+ |. .+...+++++.++|+|||++++..
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 99999965321 11 123678999999999999999963
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.5e-11 Score=112.87 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .+++++++|+.+. + +.++||+|+++-.
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l--~~~~fDlIvsNPP 210 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L--PGRRYDLIVSNPP 210 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C--CCCCccEEEECCC
Confidence 368999999999999999987 469999999999999999875422 3699999998642 2 3468999998610
Q ss_pred -------------hhccCh----------HHHHHHHHHHHhhcccCcEEEEE
Q 043471 130 -------------LMYLSD----------KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 130 -------------~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..|-+. .....+++++.++|+|||.+++.
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 111111 12467899999999999999984
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3e-11 Score=116.13 Aligned_cols=246 Identities=29% Similarity=0.389 Sum_probs=167.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+++|+|||.|..+.+++.. +.+++|+|.++..+..+....... .+-.++.+|+-. .|++++.||.+.+.
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~--~~fedn~fd~v~~l 185 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK--MPFEDNTFDGVRFL 185 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc--CCCCccccCcEEEE
Confidence 445668999999999999999987 689999999998888777653321 244558888877 77899999999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCCCceeEEEeee
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGY 207 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 207 (485)
.+..|.++ ...++++++|+++|||+.+..++...
T Consensus 186 d~~~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~-------------------------------------------- 219 (364)
T KOG1269|consen 186 EVVCHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKT-------------------------------------------- 219 (364)
T ss_pred eecccCCc--HHHHHHHHhcccCCCceEEeHHHHHh--------------------------------------------
Confidence 99999999 66999999999999999877433210
Q ss_pred eecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHhccccccCCchHHHHHHHHHcCCCCCCEE
Q 043471 208 KCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKV 287 (485)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 287 (485)
..+ .++....
T Consensus 220 -------------------------------------~~~---------------------------------~~~~~~~ 229 (364)
T KOG1269|consen 220 -------------------------------------AKL---------------------------------KKPNSEH 229 (364)
T ss_pred -------------------------------------hhc---------------------------------cCCCccc
Confidence 000 0112245
Q ss_pred EEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-CCCCCCccEEEEcccccccCCHH
Q 043471 288 LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-TYPENSFDVIYSRDTILHIQDKP 366 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD~i~~~~~~~~~~~~~ 366 (485)
+|++||.+.--. +......+|.....+..+-.... ..-|+... +++..++|. ..++.|+++..
T Consensus 230 ~~i~~~i~~gd~-----~~~~~~~~d~~~~~~~~~~~~~~--------~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~ 293 (364)
T KOG1269|consen 230 VDILLEIEGGDA-----LPAETFNTDVFDLLKSFGFEHLK--------LEKDLALKSSFPWNTPLT---RDTITHWQDKS 293 (364)
T ss_pred ccccCceecccc-----ccceeccccHHHHHhhccchhhh--------hcccccCCCccccccccc---hhheeeccccc
Confidence 666666543211 11223333332222222211111 01122211 244566777 77788899999
Q ss_pred HHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHH
Q 043471 367 ALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437 (485)
Q Consensus 367 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 437 (485)
.++......++|+|.+++.+...........+..++...........++. ||+.+.+.+.+....
T Consensus 294 ~~f~~~~~~~~~~~~v~~~e~~~~~p~gs~~~~~~~~~~~~~l~~~~e~~------gF~~~~~~~~~~k~~ 358 (364)
T KOG1269|consen 294 ALFRGRVATLKPGGKVLILEYIRGLPEGSSDFAKYIAQAAVGLKRGGETG------GFTPVDIEDVTDKPE 358 (364)
T ss_pred HHHHhHhhccCcCceEEehhhcCcCCcCcchHHHHHHhhhhhceeccccc------CcccceeeEccccch
Confidence 99999999999999999999888777777777777766554433333332 999999987776543
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-10 Score=100.62 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=88.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-----cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-----AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.+.+|||+|||+|.++..++++ ..+|+|+|+++.+++.|++.. .++.++.+|+...+ + +++||+|++|=
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~---~~~~~~~~D~~~~~--~-~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV---PEATWINADALTTE--F-DTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---cCCEEEEcchhccc--c-cCCccEEEECC
Confidence 3679999999999999988874 358999999999999999865 46899999997633 2 56899999983
Q ss_pred hhh----------ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCC
Q 043471 129 LLM----------YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197 (485)
Q Consensus 129 ~~~----------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (485)
-+. |........++..+.++++||+. ++-.......-+...............+..+.++-|+....|
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLEMNPG 200 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeeccCcccHHHHHHHHhcCeeecCC
Confidence 222 11112245688888897777775 442221111111101110011124456677777777754443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-11 Score=105.49 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=113.8
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
-..++|||||.|.+...+....-.+++-+|.|..|++.++..- .....+....+|-+.++|.++++|+|+++.++||++
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N 151 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN 151 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence 3479999999999999988774238999999999999987642 223356677889999999999999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCC---CChhHHHHHHhcC-----CCCCCHHHHHHHHHhCCCeEEEE--eecc
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGT---PSVEFSEYIKQRG-----YDLHDVKSYGQMLKDAGFVDIIA--EDRT 433 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~aGf~~~~~--~~~~ 433 (485)
|.+..+.+++..|||+|.++-+-+....-. ....++..-...| .++....++..+|..|||.-+.+ .+..
T Consensus 152 dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvDtDEi~ 231 (325)
T KOG2940|consen 152 DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVDTDEIV 231 (325)
T ss_pred cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceeccccee
Confidence 999999999999999999876643322100 0011222222222 23445678999999999998655 3444
Q ss_pred hHHHH
Q 043471 434 EQFVQ 438 (485)
Q Consensus 434 ~~~~~ 438 (485)
..|..
T Consensus 232 v~Yp~ 236 (325)
T KOG2940|consen 232 VGYPR 236 (325)
T ss_pred ecCch
Confidence 45543
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.3e-11 Score=112.40 Aligned_cols=105 Identities=17% Similarity=0.155 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC-------CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG-------HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.++.+||+||||.|..+..+++. + .+|+++|+++++++.|++... ..++++++.+|+... +....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-VAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-HhhCCCcccE
Confidence 45779999999999999999886 3 589999999999999998753 236899999998763 2224578999
Q ss_pred EEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++...-.+.+... ..++++.+++.|+|||.+++.
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99865433332211 257899999999999998875
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.3e-11 Score=117.90 Aligned_cols=119 Identities=25% Similarity=0.296 Sum_probs=90.4
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC--CC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT--FS 117 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~--~~ 117 (485)
.+...+.+.+|.+|||+|||+|..+..+++. ..+|+++|+++.+++.++++.... .+++++++|+...... ..
T Consensus 243 l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 243 LVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 3444567778999999999999999999886 258999999999999998875433 3789999999874211 33
Q ss_pred CCCeeEEEhh------hhhhccChH-------H-------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSN------WLLMYLSDK-------E-------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~------~~~~~~~~~-------~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.++||+|++. +++.+-++. . ..+++.++.++|||||+++.++.+..
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 5789999952 344443321 1 35789999999999999998876553
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=106.81 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=87.4
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEE
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
..+.++++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...+ .++.+...|....+...++||.|
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V 144 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI 144 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence 34567889999999999999999998876 3589999999999999999987554 36888899987765445679999
Q ss_pred EEcc------cccccC----------------CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 354 YSRD------TILHIQ----------------DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 354 ~~~~------~~~~~~----------------~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++.. ++.+-+ ...++|+.+.++|||||+++.++..
T Consensus 145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 9732 121111 1345899999999999999988644
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.1e-11 Score=113.42 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC--------CCC----CeEEEEeeccCCCC--CCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG--------HFE----NVKFMCADVTSPDL--TFSE 118 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~--------~~~----~~~~~~~d~~~~~~--~~~~ 118 (485)
++.+|||+|||-|....-..+. -..++|+|+|+..|+.|++|.. ... ...|+.+|.....+ .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6789999999999876555444 5699999999999999999871 111 35677777764321 1233
Q ss_pred --CCeeEEEhhhhhhcc--ChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 119 --DSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 119 --~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
..||+|-|.+++||. +....+.+|+++.+.|+|||+++.+.+..
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 599999999999986 44557789999999999999999986653
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-11 Score=109.82 Aligned_cols=116 Identities=22% Similarity=0.294 Sum_probs=82.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+|||+|||+|.+++..++.|+ +|+|+|++|.+++.|+++... ..++.. ....+ ...++||+|++|
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v--~~~~~----~~~~~~dlvvAN 232 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV--SLSED----LVEGKFDLVVAN 232 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE--SCTSC----TCCS-EEEEEEE
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE--EEecc----cccccCCEEEEC
Confidence 45678999999999999999999987 699999999999999986432 223333 22112 235899999998
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
-. .......+..+.+.|+|||+++++-.... ..+.+.+.+++ ||..
T Consensus 233 I~-----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~---------------~~~~v~~a~~~-g~~~ 278 (295)
T PF06325_consen 233 IL-----ADVLLELAPDIASLLKPGGYLILSGILEE---------------QEDEVIEAYKQ-GFEL 278 (295)
T ss_dssp S------HHHHHHHHHHCHHHEEEEEEEEEEEEEGG---------------GHHHHHHHHHT-TEEE
T ss_pred CC-----HHHHHHHHHHHHHhhCCCCEEEEccccHH---------------HHHHHHHHHHC-CCEE
Confidence 43 22256788889999999999999865422 34455666666 7743
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=116.33 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=90.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~ 112 (485)
.+.+........+...+|.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... .+++++++|+...
T Consensus 234 vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~ 313 (445)
T PRK14904 234 VQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF 313 (445)
T ss_pred EeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc
Confidence 33333344445667778899999999999999988875 458999999999999998876432 3689999999874
Q ss_pred CCCCCCCCeeEEEh----hh--hhh-------ccChHH-------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 113 DLTFSEDSVDMMFS----NW--LLM-------YLSDKE-------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 113 ~~~~~~~~~D~v~~----~~--~~~-------~~~~~~-------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
. ++++||+|++ ++ ++. +...+. ..+++.++.++|+|||+++.++.+..
T Consensus 314 ~---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 314 S---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred c---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 4578999994 22 221 122211 23689999999999999999877654
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-10 Score=105.82 Aligned_cols=131 Identities=20% Similarity=0.297 Sum_probs=95.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
+-+++.++...+.+|||+|||.|.++..+++... +++.+|++..+++.|++.... ..+..+...|+.+ +.. +
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~---~v~-~ 223 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE---PVE-G 223 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc---ccc-c
Confidence 5678888888777999999999999999999864 999999999999999997542 2233566666553 223 3
Q ss_pred CeeEEEhhhhhhccCh---HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 120 SVDMMFSNWLLMYLSD---KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+||+|+||=-+|--.+ .-..+++....+.|++||.|.|.-.. +...+..+.+.|.++..
T Consensus 224 kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~--------------~l~y~~~L~~~Fg~v~~ 285 (300)
T COG2813 224 KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANR--------------HLPYEKKLKELFGNVEV 285 (300)
T ss_pred cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcC--------------CCChHHHHHHhcCCEEE
Confidence 9999999855542221 11348999999999999999995331 11234566666665544
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.9e-10 Score=113.25 Aligned_cols=113 Identities=27% Similarity=0.371 Sum_probs=87.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPEN 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~ 348 (485)
.+...+.+.++.+|||+|||+|..+..+++.. +.+++++|+++.+++.+++++...+ .+++++++|+.+.+ ++ +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 33445667788999999999999999999875 4699999999999999999887544 35899999997753 33 6
Q ss_pred CccEEEEccc------ccccCC----------------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDT------ILHIQD----------------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~------~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||+|++... +.+-++ ...+++.+.++|||||+++.++.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 8999998532 111111 24579999999999999987753
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.8e-10 Score=115.56 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=89.9
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC---CeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE---NVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~ 115 (485)
.....+...+.+.++.+|||+|||+|..+..+++. ..+|+|+|+++++++.++++....+ .+.+..+|.......
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 34445566678888999999999999999999886 3699999999999999988765332 234466665542211
Q ss_pred CCCCCeeEEEh----h--hhhhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 116 FSEDSVDMMFS----N--WLLMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 116 ~~~~~~D~v~~----~--~~~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+.++||+|++ + +++.+.++- ...+++.++.++|||||.++.++.+..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 24578999984 2 345444431 135799999999999999999887764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=115.66 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=90.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~ 115 (485)
.....+...+.+.+|.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.... .+++++++|+..++ .
T Consensus 224 ~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~ 302 (431)
T PRK14903 224 ESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-E 302 (431)
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-h
Confidence 33333444567778899999999999999999886 469999999999999999876433 36899999988732 1
Q ss_pred CCCCCeeEEEhh------hhhhccCh-------H-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 116 FSEDSVDMMFSN------WLLMYLSD-------K-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 116 ~~~~~~D~v~~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.+++||.|++. +++..-++ . ...+.+.++.+.|||||.++.++.+..
T Consensus 303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 345789999852 12221111 1 135679999999999999999877654
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-10 Score=103.23 Aligned_cols=103 Identities=19% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCh----hHHHHhhc----C--CCEEEEEeCCHHHHHHHHHHhc-------------------------
Q 043471 283 PGQKVLDVGCGIGG----GDFYMADK----F--DVHVVGIDLSINMISFALERAI------------------------- 327 (485)
Q Consensus 283 ~~~~vLDiGcG~G~----~~~~l~~~----~--~~~v~g~D~s~~~~~~a~~~~~------------------------- 327 (485)
+..+|+.+||++|. +++.+.+. . ..+++|+|+|+.+++.|++-.-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45799999999994 44445541 1 3699999999999999985321
Q ss_pred ----CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 ----GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 ----~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+..+|.|...|+.+.+.+.+.||+|+|.+++.|++ ...++++.+++.|+|||.|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 122578999999988434568899999999999995 4678999999999999999987
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=115.70 Aligned_cols=117 Identities=25% Similarity=0.352 Sum_probs=87.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~ 119 (485)
.+...+...++.+|||+|||+|..+..+++. ..+|+|+|+++++++.++++.... .+++++++|+......++ +
T Consensus 241 lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~ 319 (444)
T PRK14902 241 LVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA-E 319 (444)
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc-c
Confidence 3445566777889999999999999999886 358999999999999998875432 368999999987422233 7
Q ss_pred CeeEEEhhhh------hhccCh-------HH-------HHHHHHHHHhhcccCcEEEEEeccC
Q 043471 120 SVDMMFSNWL------LMYLSD-------KE-------VEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 120 ~~D~v~~~~~------~~~~~~-------~~-------~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+||+|++... +.+-++ .. ...+++++.++|||||.++.+..+.
T Consensus 320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 8999996421 111111 11 2468999999999999999876554
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=99.62 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=101.1
Q ss_pred CCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcC--CCCC-eEEEEeeccCCCCCCC------CCCeeE
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNG--HFEN-VKFMCADVTSPDLTFS------EDSVDM 123 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~--~~~~-~~~~~~d~~~~~~~~~------~~~~D~ 123 (485)
+.+|||||||||.++.++++.-. .-.-.|+.+....-.+.... ..+| ..-+..|+...+++.. .++||+
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 33799999999999999999844 55677888877544333221 1233 3556678877655543 568999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc----------cccCCCC-CCCCChhHHHHHhhhcce
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD----------SKRKHNP-THYREPRFYSKVFKECQI 192 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~~ 192 (485)
|+|.+++|.++....+.+++.+.++|+|||.|++--+-...+.. ..+.+++ +-+++.+.+..+..+.|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL 185 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL 185 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC
Confidence 99999999999888999999999999999999995433222211 1123343 667788888888888888
Q ss_pred ecC
Q 043471 193 QDA 195 (485)
Q Consensus 193 ~~~ 195 (485)
...
T Consensus 186 ~l~ 188 (204)
T PF06080_consen 186 ELE 188 (204)
T ss_pred ccC
Confidence 543
|
The function of this family is unknown. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=106.79 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=85.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+.+.++.+|||+|||+|..+..+++. ...|+++|+++.+++.++++.... .++.++..|+... +...++||
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~--~~~~~~fD 142 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF--GAAVPKFD 142 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh--hhhccCCC
Confidence 4456778899999999999999999876 358999999999999998875432 4789999998763 33446799
Q ss_pred EEEhh----h--hhhccC-------hH-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 123 MMFSN----W--LLMYLS-------DK-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 123 ~v~~~----~--~~~~~~-------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+|++. + ++.+-+ .. ...++|+++.++|||||+|+.++.+..
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 99852 1 222111 11 124699999999999999998876543
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=107.38 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=85.6
Q ss_pred hhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
+..+.++..+. ..++.+|||||||+|.++..+++. +.+|+++|+++++++.|++.... .++++++.+|+.+. +
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-l 130 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-I 130 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-H
Confidence 34444544333 345679999999999999999887 56899999999999999998653 25799999998653 1
Q ss_pred CCCCCCeeEEEhhhhh-hccChH-HHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLL-MYLSDK-EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~-~~~~~~-~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.-..++||+|++...- ...+.. ...++++++.+.|+|||.+++.
T Consensus 131 ~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 1123689999975311 111110 1258999999999999999995
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-10 Score=104.37 Aligned_cols=111 Identities=25% Similarity=0.334 Sum_probs=90.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+.......+..+|||||+|.|.++..++++ +.+++..|+ |..++.+++ .++++++.+|+.+ ++ |. +
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~-~~--P~--~ 159 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFD-PL--PV--A 159 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTT-CC--SS--E
T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHh-hh--cc--c
Confidence 34455556666779999999999999999988 558999998 778888888 3799999999973 33 33 9
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccC--cEEEEEeccCCC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVG--GYIFFRESCFHQ 164 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg--G~l~~~~~~~~~ 164 (485)
|+|+...++|+++++....+|+++++.|+|| |.|+|.+.....
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 9999999999999999999999999999999 999999887544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-10 Score=106.61 Aligned_cols=113 Identities=21% Similarity=0.325 Sum_probs=85.8
Q ss_pred cEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 57 TVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
+|||+|||+|.+++.++.... +|+|+|+|+++++.|+++.... .++.++++|+.+. ..++||+|+|| ..|
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~----~~~~fDlIVsN--PPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP----LRGKFDLIVSN--PPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc----cCCceeEEEeC--CCC
Confidence 799999999999999999865 9999999999999999875432 3566777776542 23599999998 333
Q ss_pred cChH-------------------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHh
Q 043471 133 LSDK-------------------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 133 ~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (485)
++.+ ...+++.++.+.|+|||.+++.... . ..+...+++
T Consensus 187 ip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~---------------q~~~v~~~~ 250 (280)
T COG2890 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-T---------------QGEAVKALF 250 (280)
T ss_pred CCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-C---------------cHHHHHHHH
Confidence 3322 3557888899999999998884331 1 356677888
Q ss_pred hhcc
Q 043471 188 KECQ 191 (485)
Q Consensus 188 ~~~~ 191 (485)
.+.+
T Consensus 251 ~~~~ 254 (280)
T COG2890 251 EDTG 254 (280)
T ss_pred HhcC
Confidence 8777
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.2e-10 Score=106.30 Aligned_cols=104 Identities=20% Similarity=0.203 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEccCCCC-CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL------KCSVEFEVADCTKK-TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d~~~~-~~~~~~fD~i 353 (485)
+.+.+||+||||+|.++..+++..+ .+|+++|+++.+++.|++.+... ..+++++.+|+... ....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3456999999999999999987643 58999999999999999987531 45789999998653 2235789999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEE
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++...-.+.+. ..++++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99543222221 367889999999999998876
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-09 Score=102.93 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=110.3
Q ss_pred cccCCc--hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEc-
Q 043471 263 FVSTGG--IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVA- 338 (485)
Q Consensus 263 ~~~~~~--~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~- 338 (485)
|+.+.. ++.++.++.....++|..|||-=||||+++....-- |++++|+|++..|++-|+.|+...+ ....+...
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~ 253 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVL 253 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEec
Confidence 444443 356677777778999999999999999999887754 9999999999999999999998664 34555555
Q ss_pred cCCCCCCCCCCccEEEEcccccc-----cCC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCC
Q 043471 339 DCTKKTYPENSFDVIYSRDTILH-----IQD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409 (485)
Q Consensus 339 d~~~~~~~~~~fD~i~~~~~~~~-----~~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (485)
|+..+|+++.++|.|++-...-- ... ..++|+.+.++||+||++++..+
T Consensus 254 Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p---------------------- 311 (347)
T COG1041 254 DATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP---------------------- 311 (347)
T ss_pred ccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC----------------------
Confidence 99999998888999999533211 111 66789999999999999999843
Q ss_pred CCHHHHHHHHHhCCCeEEEEeec
Q 043471 410 HDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
......++.+||+++.....
T Consensus 312 ---~~~~~~~~~~~f~v~~~~~~ 331 (347)
T COG1041 312 ---RDPRHELEELGFKVLGRFTM 331 (347)
T ss_pred ---CcchhhHhhcCceEEEEEEE
Confidence 11234566788988765443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=104.81 Aligned_cols=111 Identities=24% Similarity=0.297 Sum_probs=84.8
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT- 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~- 115 (485)
.+++..+ ...++.+|||||||+|..++.+++. ..+|+++|+++++++.|+++... ..+++++.+|+.+. ++
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L~~ 135 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-LDQ 135 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-HHH
Confidence 3444433 4556789999999999999888875 45999999999999999987543 24799999999763 11
Q ss_pred ----CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 ----FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+.++||+|++.. ..+.+..++..+.+.|+|||.+++...
T Consensus 136 l~~~~~~~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HHhCCCCCCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 1246899999853 223477899999999999999888544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.5e-10 Score=103.70 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=82.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-CCCCCCccEEEEcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-TYPENSFDVIYSRD 357 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~~~~~~fD~i~~~~ 357 (485)
.++.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+.. ...+++++.+|+.+. .-..++||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 346799999999999999998876 57999999999999999998753 236899999998553 21236899999852
Q ss_pred ccc--ccC---CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 358 TIL--HIQ---DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 358 ~~~--~~~---~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+. ..+ ...++++++.+.|+|||++++..+
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 22 111 237899999999999999998644
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.3e-10 Score=108.42 Aligned_cols=106 Identities=32% Similarity=0.424 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---------C--CCCCeEEEEccCCCC----CCCC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---------G--LKCSVEFEVADCTKK----TYPE 347 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---------~--~~~~i~~~~~d~~~~----~~~~ 347 (485)
++.+|||+|||-|+-+.-....--..++|+|++...++.|+++.. . ..-...++.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 678999999998876666555423599999999999999999982 1 112456677777543 1233
Q ss_pred --CCccEEEEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 348 --NSFDVIYSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 348 --~~fD~i~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+||+|-|..++||. . ....+|+++...|+|||+++.+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 599999999999998 2 2445899999999999999998654
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.7e-10 Score=98.10 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCCCC-CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPG-QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.+..+++.+...++ ..|-|+|||.+.++. .....|+..|+-+ .+-.++.+|+.+.|+++++
T Consensus 167 Pld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a--------------~~~~V~~cDm~~vPl~d~s 228 (325)
T KOG3045|consen 167 PLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SERHKVHSFDLVA--------------VNERVIACDMRNVPLEDES 228 (325)
T ss_pred hHHHHHHHHHhCcCceEEEecccchhhhhh----ccccceeeeeeec--------------CCCceeeccccCCcCccCc
Confidence 46667777765554 578899999998665 2234788888722 1445678999999999999
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
.|+++++.++.- .|...++++++|+|+|||.+.|.+... ++.+...+...+...||.+...
T Consensus 229 vDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S------------------Rf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 229 VDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS------------------RFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh------------------hcccHHHHHHHHHHcCCeeeeh
Confidence 999999877643 589999999999999999999996432 4567778999999999998765
Q ss_pred eecc
Q 043471 430 EDRT 433 (485)
Q Consensus 430 ~~~~ 433 (485)
....
T Consensus 290 d~~n 293 (325)
T KOG3045|consen 290 DVSN 293 (325)
T ss_pred hhhc
Confidence 5443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=99.56 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=93.7
Q ss_pred hhhhcCCCcCccChhhhHHHhccC-----CCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCC
Q 043471 27 EAMMLDSKASDLDKEERPEVLSLL-----PPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFEN 101 (485)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~ 101 (485)
|..+....-+-.+.+..++++..- +.....++||||+|.|..+..++....+|+++|.|+.|....+++ +
T Consensus 62 NG~LgRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-----g 136 (265)
T PF05219_consen 62 NGILGRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-----G 136 (265)
T ss_pred hhhhcCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-----C
Confidence 444444444556666667777644 222457899999999999999999999999999999998777774 3
Q ss_pred eEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 102 ~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+.+ +..+ +.-.+.+||+|.|.+++-...+ ....|+++++.|+|+|.++++-..
T Consensus 137 ~~vl--~~~~--w~~~~~~fDvIscLNvLDRc~~--P~~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 137 FTVL--DIDD--WQQTDFKFDVISCLNVLDRCDR--PLTLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred CeEE--ehhh--hhccCCceEEEeehhhhhccCC--HHHHHHHHHHHhCCCCEEEEEEEe
Confidence 3333 3333 2223568999999999998887 459999999999999999997543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.4e-09 Score=109.76 Aligned_cols=112 Identities=25% Similarity=0.332 Sum_probs=87.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----C
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----T 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~ 344 (485)
.....+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++...+ .+++++.+|+.+. +
T Consensus 284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 34556667777778899999999999999999987 4799999999999999999876433 3699999998642 3
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+++++||+|++...-.- ....++.+.+ ++|++.++++.
T Consensus 363 ~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 363 WALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred hhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEe
Confidence 44568999998654322 3455666666 69999999984
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-10 Score=96.52 Aligned_cols=127 Identities=16% Similarity=0.231 Sum_probs=81.5
Q ss_pred CccChhhhHHHhccCCCCC-CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 36 SDLDKEERPEVLSLLPPYE-GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
..|+..=...+++.+...+ +..|.|+|||.+.++..+ +.+.+|...|+-. .+-....+|+.. +
T Consensus 53 ~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva-------------~n~~Vtacdia~--v 116 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA-------------PNPRVTACDIAN--V 116 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS--------------SSTTEEES-TTS---
T ss_pred hcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccC-------------CCCCEEEecCcc--C
Confidence 3455555566777766444 579999999999998665 3567899999865 233467899988 6
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
|++++++|+++++.+|+-.. +..+++|+.|+|||||.+.|.+...... ..+.+.+.++..||..
T Consensus 117 PL~~~svDv~VfcLSLMGTn---~~~fi~EA~RvLK~~G~L~IAEV~SRf~-------------~~~~F~~~~~~~GF~~ 180 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMGTN---WPDFIREANRVLKPGGILKIAEVKSRFE-------------NVKQFIKALKKLGFKL 180 (219)
T ss_dssp S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG-S--------------HHHHHHHHHCTTEEE
T ss_pred cCCCCceeEEEEEhhhhCCC---cHHHHHHHHheeccCcEEEEEEecccCc-------------CHHHHHHHHHHCCCeE
Confidence 67899999999887766554 6789999999999999999998854321 4556677788999853
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=118.15 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=92.2
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----------------CCCeEEEEccCCCCCC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----------------KCSVEFEVADCTKKTY 345 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----------------~~~i~~~~~d~~~~~~ 345 (485)
+.+|||+|||+|.++..++++. ..+++|+|+|+.+++.|++++... ..+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999876 469999999999999999988632 1368999999876431
Q ss_pred C-CCCccEEEEccccc--------------c------------c--------CC----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 P-ENSFDVIYSRDTIL--------------H------------I--------QD----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~-~~~fD~i~~~~~~~--------------~------------~--------~~----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
. ..+||+|+++-... | . .| ...++.++.++|+|||++++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1 13699999974311 1 0 01 2567888889999999998872
Q ss_pred cccCCCCCChhHHHHHHhcCCCCCCHHHHH-HHHHhCCCeEEEE
Q 043471 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYG-QMLKDAGFVDIIA 429 (485)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~aGf~~~~~ 429 (485)
-. ...+.+. +++++.||+.+.+
T Consensus 279 G~---------------------~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 279 GG---------------------RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred Cc---------------------cHHHHHHHHHHHHCCCCeeEE
Confidence 11 1134566 5888888887654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-09 Score=99.48 Aligned_cols=166 Identities=16% Similarity=0.306 Sum_probs=109.1
Q ss_pred cCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHh------ccccccCCch--HHHHHHHHHcC-CC--CCC
Q 043471 217 KKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF------GVGFVSTGGI--ETTKEFVAKLD-LK--PGQ 285 (485)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~-~~--~~~ 285 (485)
.+......++...+.......|.+|+....... .+.+.+. -..||+.... .....++..+. .. ...
T Consensus 22 ~k~~~v~~Rl~~~~~~~~~~~~~~y~~~l~~~~---~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~i 98 (268)
T COG1352 22 YKRTLVYRRLSRRLRKLGLKNFEEYLNLLESDS---EELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPI 98 (268)
T ss_pred hhHHHHHHHHHHHHHHhCcccHHHHHHHHhCCH---HHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCce
Confidence 344445555555555555555666666544331 1222222 2244544432 23344444331 11 356
Q ss_pred EEEEECCCCCh----hHHHHhhcC------CCEEEEEeCCHHHHHHHHHHhc----------------------------
Q 043471 286 KVLDVGCGIGG----GDFYMADKF------DVHVVGIDLSINMISFALERAI---------------------------- 327 (485)
Q Consensus 286 ~vLDiGcG~G~----~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~---------------------------- 327 (485)
+|+-+||+||. +++.+.+.. ..+|+|+|+|..+++.|+.-.-
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v 178 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRV 178 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEE
Confidence 99999999994 455555543 3699999999999999974221
Q ss_pred --CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 328 --GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 328 --~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+...|.|...|+...++..+.||+|+|.+|+.+++ ...++++.++..|+|||.|++.
T Consensus 179 ~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 179 KEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 122457888888877663457899999999999995 5778999999999999999987
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=99.49 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCc----chHHHHhh-----c--CcEEEEeCChHHHHHHHHHcC------C--------------C--
Q 043471 53 YEGKTVLEFGAGIGR----FTGELAKK-----A--GHVIALDFIDSVIKKNEEVNG------H--------------F-- 99 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~----~~~~l~~~-----~--~~v~giD~s~~~~~~a~~~~~------~--------------~-- 99 (485)
.+..+|...||++|. +++.|.+. + .+|+|+|+|+.+++.|++-.- . .
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 356799999999995 33444451 1 389999999999999986311 0 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|+|.+.|+.+ .+.+.+.||+|+|.+++-|+.++...++++.+++.|+|||+|++...
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~--~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLD--PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT---S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eeEChHHcCceEEEecccCC--CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 368999999987 33356899999999999999988899999999999999999999643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-10 Score=103.98 Aligned_cols=119 Identities=22% Similarity=0.310 Sum_probs=91.5
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCC----C----CeEEEEeeccCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHF----E----NVKFMCADVTSP 112 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~----~----~~~~~~~d~~~~ 112 (485)
+.+..|-..-.+++..++|+|||-|...+-.-+.| .+++|+||++..|+.|++|.... . .+.|+.+|....
T Consensus 105 wIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 105 WIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 34444444445668889999999999887776665 58999999999999999875421 1 478999988653
Q ss_pred C----CCCCCCCeeEEEhhhhhhcc--ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 D----LTFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~----~~~~~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
. +++++.+||+|-|.+++|+. +.....-++.++.+.|+|||+++-+-+
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 2 34456669999999999875 444578899999999999999988644
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.5e-09 Score=101.77 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=94.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHH--hc-----C-CCCCeEEEEccCCCC-CCCCCCccE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AI-----G-LKCSVEFEVADCTKK-TYPENSFDV 352 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~--~~-----~-~~~~i~~~~~d~~~~-~~~~~~fD~ 352 (485)
...+||+||||+|..+..+++.. ..+|+++|+++.+++.|++. +. . ...+++++.+|+.+. +-..++||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 34599999999999998888764 35999999999999999962 11 1 246899999998763 333568999
Q ss_pred EEEcccc--cc-cC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 353 IYSRDTI--LH-IQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 353 i~~~~~~--~~-~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|++...- .. .. -..++++.+++.|+|||.+++..... .. ... ....+.+.|+++||.+.
T Consensus 230 IIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp-----~~-~~~----------~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 230 IIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP-----AD-APL----------VYWSIGNTIEHAGLTVK 293 (374)
T ss_pred EEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh-----hh-hHH----------HHHHHHHHHHHhCCceE
Confidence 9996321 00 10 12568999999999999988873211 00 000 01236788888888777
Q ss_pred EEeecchHH
Q 043471 428 IAEDRTEQF 436 (485)
Q Consensus 428 ~~~~~~~~~ 436 (485)
......+.|
T Consensus 294 ~y~t~vPsy 302 (374)
T PRK01581 294 SYHTIVPSF 302 (374)
T ss_pred EEEEecCCC
Confidence 665544433
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-10 Score=105.94 Aligned_cols=117 Identities=18% Similarity=0.151 Sum_probs=86.4
Q ss_pred hhHHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeecc
Q 043471 42 ERPEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVT 110 (485)
Q Consensus 42 ~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~ 110 (485)
...+++..++ ..++.+||+||||.|..+..+++.. .+|+.+|+++.+++.|++.... .++++++.+|+.
T Consensus 76 ~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 76 AYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred HHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 3345555443 3567899999999999999998873 5899999999999999997532 358999999975
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChH--HHHHHHHHHHhhcccCcEEEEE
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDK--EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..-...++++||+|++...-.+.+.. --.++++.+++.|+|||.+++.
T Consensus 156 ~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 156 EFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred HHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 43111235689999986543332221 1357899999999999998774
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-10 Score=104.48 Aligned_cols=96 Identities=22% Similarity=0.291 Sum_probs=78.0
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
+-.+......+++.+...++.+|||||||+|.++..|++++.+|+|+|+++.|++.++++... ++++++++|+.+.+
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-- 100 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-- 100 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC--
Confidence 335667778888888888899999999999999999999988999999999999999987643 68999999998843
Q ss_pred CCCCCeeEEEhhhhhhccCh
Q 043471 116 FSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~ 135 (485)
+++-.+|.|++|- .++++.
T Consensus 101 ~~~~~~~~vv~Nl-PY~iss 119 (272)
T PRK00274 101 LSELQPLKVVANL-PYNITT 119 (272)
T ss_pred HHHcCcceEEEeC-CccchH
Confidence 3322258888874 455654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=99.44 Aligned_cols=105 Identities=18% Similarity=0.293 Sum_probs=83.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-----CCCCCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-----YPENSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-----~~~~~f 350 (485)
..++.+|||+|||+|..+..++... +.+++++|+++.+++.|++++. ++..+++++.+|+.+. + .+.++|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 4456799999999999888888764 4699999999999999999986 4446799999998663 1 124689
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|+.... -+....++..+.++|+|||.+++.+..
T Consensus 146 D~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234)
T PLN02781 146 DFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234)
T ss_pred CEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 99988532 135668899999999999998886543
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.3e-10 Score=114.36 Aligned_cols=111 Identities=20% Similarity=0.342 Sum_probs=84.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCC--CCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPD--LTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~--~~~~~~ 119 (485)
..+++.+...++.+|||+|||+|.++..|++.+.+|+|+|+|++|++.|+++.. ...+++++++|+.+.. +++.++
T Consensus 287 ~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~ 366 (443)
T PRK13168 287 ARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALG 366 (443)
T ss_pred HHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcC
Confidence 455666666778899999999999999999998999999999999999998653 2347999999997531 224457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|+++- .+.. ....++.+.+ ++|+++++++..
T Consensus 367 ~fD~Vi~dP--Pr~g---~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 367 GFDKVLLDP--PRAG---AAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred CCCEEEECc--CCcC---hHHHHHHHHh-cCCCeEEEEEeC
Confidence 899999862 2332 2245555555 699999999743
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=97.84 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=74.5
Q ss_pred CCEEEEECCCCChhHHHHhhcC----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++.. ++.+..+|+...++ +++||+|+++..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~----~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP----EATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc----CCEEEEcchhcccc-cCCccEEEECCCC
Confidence 5699999999999999888752 4589999999999999998864 58899999987654 5689999998776
Q ss_pred cccC--C----------HHHHHHHHHhcCCCCcE
Q 043471 360 LHIQ--D----------KPALFKSFFKWLKPGGT 381 (485)
Q Consensus 360 ~~~~--~----------~~~~l~~~~~~LkpgG~ 381 (485)
.-.. + ...+++.+.++++||+.
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5321 1 44578888886777664
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=112.47 Aligned_cols=139 Identities=19% Similarity=0.119 Sum_probs=97.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHH--hcC-----C-CCCeEEEEccCCCC-CCCCCCcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALER--AIG-----L-KCSVEFEVADCTKK-TYPENSFD 351 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~--~~~-----~-~~~i~~~~~d~~~~-~~~~~~fD 351 (485)
+++.+|||||||+|..+..+++... .+++++|+++++++.++++ +.. . .++++++.+|..+. ...+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999887644 6999999999999999983 221 1 25789999998763 22347899
Q ss_pred EEEEcccccccCC-----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 352 VIYSRDTILHIQD-----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 352 ~i~~~~~~~~~~~-----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+|++.......+. ..++++.+++.|||||.++++.... .. ......++.+.++++||.+
T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~--~~--------------~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP--YF--------------APKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc--cc--------------chHHHHHHHHHHHHcCCEE
Confidence 9999754332221 2468999999999999998874211 00 0011246888999999944
Q ss_pred EEEeecchHH
Q 043471 427 IIAEDRTEQF 436 (485)
Q Consensus 427 ~~~~~~~~~~ 436 (485)
.......+.|
T Consensus 440 ~~~~~~vps~ 449 (521)
T PRK03612 440 TPYHVNVPSF 449 (521)
T ss_pred EEEEeCCCCc
Confidence 4434433444
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.4e-10 Score=103.11 Aligned_cols=93 Identities=25% Similarity=0.323 Sum_probs=78.6
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.++.....+++.+...++.+|||||||+|.++..+++++.+|+|+|+++.+++.++++....++++++++|+.+.+ +
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~--~- 89 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD--L- 89 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC--c-
Confidence 5667888899888888899999999999999999999988999999999999999988755568999999998844 3
Q ss_pred CCCeeEEEhhhhhhccCh
Q 043471 118 EDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~ 135 (485)
..||.|+++.. ++++.
T Consensus 90 -~~~d~Vv~NlP-y~i~s 105 (258)
T PRK14896 90 -PEFNKVVSNLP-YQISS 105 (258)
T ss_pred -hhceEEEEcCC-cccCc
Confidence 35899999754 44543
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=96.09 Aligned_cols=125 Identities=14% Similarity=0.283 Sum_probs=94.7
Q ss_pred cChhhhHHHhccCCCCC-CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYE-GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
|+..=...+++.+...+ ...|.|+|||.+.++. ....+|+..|+-+ .+-+.+.||+.. +|+
T Consensus 163 WP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a-------------~~~~V~~cDm~~--vPl 224 (325)
T KOG3045|consen 163 WPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA-------------VNERVIACDMRN--VPL 224 (325)
T ss_pred CCCChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec-------------CCCceeeccccC--CcC
Confidence 55555567777776554 5689999999998765 4456899998754 355789999999 777
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
+++++|+++++.+|+-.. +..+++++.|+|+|||.++|.++... +.+...+.+-+...||....
T Consensus 225 ~d~svDvaV~CLSLMgtn---~~df~kEa~RiLk~gG~l~IAEv~SR-------------f~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLMGTN---LADFIKEANRILKPGGLLYIAEVKSR-------------FSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred ccCcccEEEeeHhhhccc---HHHHHHHHHHHhccCceEEEEehhhh-------------cccHHHHHHHHHHcCCeeee
Confidence 999999998876665443 67899999999999999999987532 22445577788888985433
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-09 Score=94.23 Aligned_cols=116 Identities=9% Similarity=0.139 Sum_probs=84.3
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~ 348 (485)
.+.+++.+. ..++.+|||+|||+|.++..++.+...+|+++|.++.+++.+++++...+ .+++++++|+.+. +....
T Consensus 41 ~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~ 120 (199)
T PRK10909 41 RETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGT 120 (199)
T ss_pred HHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCC
Confidence 344555442 24577999999999999986555545699999999999999999886443 3689999998653 22245
Q ss_pred CccEEEEcccccccCCHHHHHHHHHh--cCCCCcEEEEEecc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFK--WLKPGGTVLISDYC 388 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 388 (485)
+||+|++...+.. .-...+++.+.. +|+|+|.+++....
T Consensus 121 ~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 121 PHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 7999999887432 234556666655 48999999988543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-09 Score=96.34 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=83.9
Q ss_pred cChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 38 LDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.....++.+++.+.. .++.+|||+|||+|.+++.++.+ ..+|+++|+++.+++.++++... ..+++++++|+...
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~- 114 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF- 114 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-
Confidence 334455566766643 56789999999999999865444 56999999999999998886432 24799999998753
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEec
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRES 160 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 160 (485)
++...++||+|+++=. ++-.- .+.+++.+.+ +|+|+|++++...
T Consensus 115 l~~~~~~fDlV~~DPP-y~~g~--~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 115 LAQPGTPHNVVFVDPP-FRKGL--LEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred HhhcCCCceEEEECCC-CCCCh--HHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2212457999998732 22222 3456666655 4899999999754
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-09 Score=102.26 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 56 KTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
-++|-+|||+-.++..+-+.|. .|+-+|+|+..++....+.+. .+...+...|+.. +.|++.+||+|+.-+.+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~--l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQ--LVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchh--ccCCCcceeEEEecCccccc
Confidence 4899999999999999988865 899999999999998887743 3478999999998 77899999999999888776
Q ss_pred C-hH-------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 134 S-DK-------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 134 ~-~~-------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
- ++ .....+.++.|+|+|||+++.-..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 3 21 134678899999999999776544
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=94.13 Aligned_cols=101 Identities=24% Similarity=0.367 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCC-------------------------------
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLK------------------------------- 330 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~------------------------------- 330 (485)
.+..+|||||..|.++..+++.+++ .+.|+||.+..++.|++.+....
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4568999999999999999999864 89999999999999999875111
Q ss_pred -----CCeEE-------EEccCCCCCCCCCCccEEEEccccccc------CCHHHHHHHHHhcCCCCcEEEEE
Q 043471 331 -----CSVEF-------EVADCTKKTYPENSFDVIYSRDTILHI------QDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 331 -----~~i~~-------~~~d~~~~~~~~~~fD~i~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.++.+ ...|+. .+....||+|+|..+-.|+ +....+|+.+.++|.|||+|++.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 01111 111121 1234679999997765544 23778999999999999999887
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-09 Score=86.34 Aligned_cols=106 Identities=13% Similarity=0.256 Sum_probs=81.6
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCc-chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGR-FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
.+.+.+.++..++.+|||||||+|. ++..|++.|.+|+|+|+++..++.+++. .++++++|+.+.++... ..+
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y-~~a 78 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIY-KNA 78 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHH-hcC
Confidence 3456666666677899999999996 8899999999999999999999999885 57899999988665432 479
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|.+.- +.++....+-++.+.+ |.-++|....
T Consensus 79 ~liysir-----pp~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 79 KLIYSIR-----PPRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred CEEEEeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 9999864 4455667777777744 4557775443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.1e-09 Score=97.41 Aligned_cols=102 Identities=22% Similarity=0.348 Sum_probs=88.9
Q ss_pred CcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh
Q 043471 56 KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~ 135 (485)
...+|+|.|.|+.+..+.....+|-++++....+-.++.... +.|..+-+|...- .| +-|+|+..+++||++|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~-~P----~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQD-TP----KGDAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CCcceeccccccc-CC----CcCeEEEEeecccCCh
Confidence 689999999999999998888899999999999888877765 4588899998753 32 3469999999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEeccCCC
Q 043471 136 KEVEKLAERMVKWLKVGGYIFFRESCFHQ 164 (485)
Q Consensus 136 ~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (485)
+...++|++|++.|+|||.|++.+.....
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 99999999999999999999999886543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=107.87 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--C--CCeEEEEeeccCCC--CCCCCCCeeEEEh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--F--ENVKFMCADVTSPD--LTFSEDSVDMMFS 126 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~--~~~~~~~~d~~~~~--~~~~~~~~D~v~~ 126 (485)
++.+|||+|||+|.+++.++..++ +|+++|+|+.+++.|+++... . .+++++++|+.+.- +....++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 578999999999999988766655 899999999999999986532 2 36899999997631 1112458999998
Q ss_pred hhhhhccCh--------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 NWLLMYLSD--------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~~~~~~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.= ..+... ..+..++..+.++|+|||.+++...+
T Consensus 300 DP-P~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 300 DP-PKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CC-CCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 72 222221 12556677788999999999886543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=100.57 Aligned_cols=106 Identities=15% Similarity=0.192 Sum_probs=83.8
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-C----CC
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT-F----SE 118 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~-~----~~ 118 (485)
+...++.+|||||||+|..++.+++. +.+|+++|.++++.+.|++.... ..+++++.+|+.+. ++ + ..
T Consensus 114 ~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L~~l~~~~~~ 192 (278)
T PLN02476 114 VQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-LKSMIQNGEG 192 (278)
T ss_pred HHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhcccC
Confidence 34556789999999999999999975 45799999999999999987643 34899999998653 11 1 13
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++||+|+.-. ....+..+++.+.++|+|||.|++....
T Consensus 193 ~~FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 193 SSYDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 6899999864 2344789999999999999998885443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=100.00 Aligned_cols=104 Identities=23% Similarity=0.249 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC--CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK--TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~--~~~~~~fD~i 353 (485)
+...+||+||||.|..+..+++..+ .+|+.+|+++.+++.|++.+... ..+++++.+|+... ..+.++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4567999999999999999987643 48999999999999999987532 35899999997442 1235689999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEE
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++...-.+.+. ..++++.+++.|+|||.++..
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 98543222221 357899999999999999776
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-09 Score=118.56 Aligned_cols=122 Identities=18% Similarity=0.157 Sum_probs=86.5
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------------------CCCeEEEEeeccCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------------------FENVKFMCADVTSPD 113 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------------------~~~~~~~~~d~~~~~ 113 (485)
++.+|||+|||+|.+++.++++. .+|+|+|+|+++++.|+++... ..+++|+++|+.+..
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 35689999999999999999874 5899999999999999876532 136999999987632
Q ss_pred CCCCCCCeeEEEhhhhhhccCh--------------------------------------HHHHHHHHHHHhhcccCcEE
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSD--------------------------------------KEVEKLAERMVKWLKVGGYI 155 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~--------------------------------------~~~~~~l~~~~~~L~pgG~l 155 (485)
.....+||+|+||= .+++. .-+++++.++.++|+|||.+
T Consensus 198 -~~~~~~fDlIVSNP--PYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l 274 (1082)
T PLN02672 198 -RDNNIELDRIVGCI--PQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM 274 (1082)
T ss_pred -cccCCceEEEEECC--CcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence 11123699999971 11110 01357788888999999999
Q ss_pred EEEeccCCCCCccccCCCCCCCCChhHHH-HHhhhcceec
Q 043471 156 FFRESCFHQSGDSKRKHNPTHYREPRFYS-KVFKECQIQD 194 (485)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (485)
++- .... ..+... +++++.||..
T Consensus 275 ~lE-iG~~---------------q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 275 IFN-MGGR---------------PGQAVCERLFERRGFRI 298 (1082)
T ss_pred EEE-ECcc---------------HHHHHHHHHHHHCCCCe
Confidence 883 3221 334555 5777767643
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=103.23 Aligned_cols=106 Identities=23% Similarity=0.205 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHc---------CCCCCeEEEEeeccCCCCCCCCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVN---------GHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~---------~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
...+.+||+||||.|..+..+.+.. .+|+++|+++++++.|++.. -..++++++.+|+... +.-..++
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-L~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-LSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-HHhcCCC
Confidence 4456799999999999988888764 58999999999999999621 1236899999999864 2223568
Q ss_pred eeEEEhhhhhh---ccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLM---YLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|++...-. ....---.++++.+++.|+|||.+++.
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 99999874211 111111357999999999999998885
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.1e-09 Score=103.18 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
...+.+||+||||+|..+..+++.. .+|+++|+++++++.|++.... .++++++.+|.... +....++||+
T Consensus 70 ~~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-l~~~~~~yDv 148 (270)
T TIGR00417 70 HPNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-LADTENTFDV 148 (270)
T ss_pred CCCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-HHhCCCCccE
Confidence 3456699999999999998888763 5899999999999999986422 24788888887542 1112468999
Q ss_pred EEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|++.......+... ..++++.+.+.|+|||.+++.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 99865422222211 357899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.8e-10 Score=96.58 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=85.6
Q ss_pred CCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
...++|||||.|.+...|...+ .+++-+|.|-.|++.++..-...-.+...++|-+. ++|.++++|+|+++.++||+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~--Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEF--LDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhc--ccccccchhhhhhhhhhhhh
Confidence 4579999999999999998875 48999999999999988754321246777888776 67899999999999999999
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+ .+..+.+|+..|||.|.++-+
T Consensus 151 Nd--LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 151 ND--LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred cc--CchHHHHHHHhcCCCccchhH
Confidence 98 779999999999999987663
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=99.09 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
.+.+||+||||+|.++..+++.. ..+++++|+++.+++.|++.+... ..++++..+|.... .-..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 34599999999999999888765 358999999999999999976432 24677888776442 112468999998
Q ss_pred cccccccC--C--HHHHHHHHHhcCCCCcEEEEE
Q 043471 356 RDTILHIQ--D--KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 356 ~~~~~~~~--~--~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.......+ + ..++++.+++.|+|||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65422222 2 468899999999999999887
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-09 Score=116.62 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=80.2
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--C--CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--F--ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|+++... . .+++++++|+.+. +.-..++||+|++.=
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-LKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-HHHcCCCcCEEEECC
Confidence 478999999999999999999876 599999999999999987532 2 3689999998653 111146899999862
Q ss_pred hhhcc----------ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 129 LLMYL----------SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 129 ~~~~~----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
- .+. ....+..++..+.++|+|||.+++...
T Consensus 617 P-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 P-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred C-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 1 110 012256788899999999999988643
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-09 Score=99.39 Aligned_cols=105 Identities=22% Similarity=0.287 Sum_probs=82.8
Q ss_pred CCcEEEEcCCCCc----chHHHHhh------cCcEEEEeCChHHHHHHHHHcCC----------------------C---
Q 043471 55 GKTVLEFGAGIGR----FTGELAKK------AGHVIALDFIDSVIKKNEEVNGH----------------------F--- 99 (485)
Q Consensus 55 ~~~vLDiGcG~G~----~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~~----------------------~--- 99 (485)
..+|...||+||. ++..+.+. ..+|+|+|+|+.+++.|++-.-. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999995 33444443 24799999999999999864100 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|+|.+.|+.+.+.+ +.+.||+|+|.+++.|++++...++++.+++.|+|||+|++...
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 3578999998774332 25789999999999999888899999999999999999999643
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-09 Score=102.26 Aligned_cols=104 Identities=23% Similarity=0.204 Sum_probs=79.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCCC--C--CCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LK-CSVEFEVADCTKKT--Y--PENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~~--~--~~~~fD~i~~ 355 (485)
++.+|||+|||+|.++...+.....+|+++|+|+.+++.|++++.. +. .+++++++|+.+.. + ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 5789999999999998876654234999999999999999999864 33 36899999986641 1 2468999999
Q ss_pred ccccccc---------CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 356 RDTILHI---------QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 356 ~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
......- .+...+++.+.++|+|||.++...
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 7553211 134455667889999999998764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.8e-09 Score=103.93 Aligned_cols=111 Identities=22% Similarity=0.276 Sum_probs=83.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----CC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----TY 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~~ 345 (485)
....+++.+.+.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...+ .+++++.+|+.+. ++
T Consensus 280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence 3445555566677789999999999999999987 4699999999999999999876333 4799999998652 23
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+.+||+|+....-. .-...+++.+.+ ++|++.++++
T Consensus 359 ~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 359 AGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred cCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence 346799999754321 113566666654 8999988876
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.9e-10 Score=105.80 Aligned_cols=107 Identities=12% Similarity=0.127 Sum_probs=77.2
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+.+...++.+|||+|||+|.+++.+++.+.+|+|+|+|+.+++.|+++... ..+++|+++|+.+... ...++||+|+
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~-~~~~~~D~Vv 245 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFAT-AQGEVPDLVL 245 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHH-hcCCCCeEEE
Confidence 334434578999999999999999999999999999999999999886532 2579999999977421 1245799999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++= ....- ...++ ++...++|+++++++..
T Consensus 246 ~dP--Pr~G~--~~~~~-~~l~~~~~~~ivyvsc~ 275 (315)
T PRK03522 246 VNP--PRRGI--GKELC-DYLSQMAPRFILYSSCN 275 (315)
T ss_pred ECC--CCCCc--cHHHH-HHHHHcCCCeEEEEECC
Confidence 872 22211 11233 33444788888888643
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-09 Score=97.39 Aligned_cols=104 Identities=26% Similarity=0.406 Sum_probs=77.5
Q ss_pred cEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCC-CCCCCCCCeeEEEhhhhhh
Q 043471 57 TVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSP-DLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~-~~~~~~~~~D~v~~~~~~~ 131 (485)
.+||||||.|.+...+|+. ...++|+|++...+..+.++.. ..+|+.++++|+... ..-++++++|.|+.++.=.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 8999999999999999988 5689999999999988777643 346999999998762 2225678999999886533
Q ss_pred ccChH------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 132 YLSDK------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 132 ~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|.... ....++..+.++|+|||.|.+.+-
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 33211 134799999999999999999643
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-09 Score=95.41 Aligned_cols=164 Identities=21% Similarity=0.307 Sum_probs=109.9
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-------CCCeEEEEccCCC------CCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-------KCSVEFEVADCTK------KTYP 346 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------~~~i~~~~~d~~~------~~~~ 346 (485)
-.+++..++++|||-|+-++..-+..=..++|+||+...++.|+++.... .-.+.|+.+|... ++++
T Consensus 114 y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 114 YTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred HhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 35678899999999998777666552238999999999999999887621 1235788888754 2445
Q ss_pred CCCccEEEEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEecccCC------CCCChhH--------------HHH-
Q 043471 347 ENSFDVIYSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISDYCKSF------GTPSVEF--------------SEY- 401 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~------~~~~~~~--------------~~~- 401 (485)
+.+||+|-|-.++|+. . ...-+|+++.+.|+|||.++-+.+.... ......+ ..+
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~ 273 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFD 273 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccC
Confidence 5559999999999887 2 3455799999999999999888553210 0000000 000
Q ss_pred HHhcCC--------------CCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHH
Q 043471 402 IKQRGY--------------DLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRE 443 (485)
Q Consensus 402 ~~~~~~--------------~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~ 443 (485)
..+.|. .+..-..+..+++..|++.+.+.....-|...+..+
T Consensus 274 ~p~fG~kY~F~LedaVdcPEylV~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~ 329 (389)
T KOG1975|consen 274 VPPFGAKYRFHLEDAVDCPEYLVPFPTLVSLAEEYGLELVFVKPFADFYEEELKKN 329 (389)
T ss_pred CCCccceEEEEcccccCCcceeeehHHHHHHHHhcCcEEEEeccHHHHHHHhcccc
Confidence 001110 112346788999999999998877666554444333
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=92.67 Aligned_cols=115 Identities=24% Similarity=0.329 Sum_probs=95.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC--C-CCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH--F-ENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~ 111 (485)
..+.....++..+...+|++|||.|.|+|.++.+|+.. | .+|+..|+-++..+.|++++.. . .++++..+|+.+
T Consensus 78 IyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~ 157 (256)
T COG2519 78 IYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVRE 157 (256)
T ss_pred ecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccc
Confidence 44556678889999999999999999999999999975 3 5999999999999999997643 2 359999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.. ++ ..||+|+.-. ++ .-.++..+.++|+|||.+++-.++.
T Consensus 158 ~~--~~-~~vDav~LDm-----p~--PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 158 GI--DE-EDVDAVFLDL-----PD--PWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cc--cc-cccCEEEEcC-----CC--hHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 43 33 3999999753 55 4589999999999999999866654
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=93.53 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCC------------------------------
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFE------------------------------ 100 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~------------------------------ 100 (485)
..+..+|||||.+|.++..+|+. ++ .|.|+||.+..++.|++.+....
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 35778999999999999999997 44 79999999999999998754211
Q ss_pred -------CeEEEEeec----cCCCCCCCCCCeeEEEhhhhhh--c--cChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 101 -------NVKFMCADV----TSPDLTFSEDSVDMMFSNWLLM--Y--LSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 101 -------~~~~~~~d~----~~~~~~~~~~~~D~v~~~~~~~--~--~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++.|...+. .++ +.+....||+|+|..+-. | ..|+.+..++.++.++|.|||+|++.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~df-l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDF-LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccCCcchhcccccEEEecchh-hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 111111111 111 123457899999865422 3 24667999999999999999999983
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-09 Score=86.18 Aligned_cols=117 Identities=18% Similarity=0.251 Sum_probs=98.8
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC---cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--C-C
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--L-T 115 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~-~ 115 (485)
..+.|...+....|.-|||+|.|||.++..+.++|. +++++|.|++.+...++.. +.++++.+|+.+++ + .
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~~l~e 112 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRTTLGE 112 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHHHHhh
Confidence 346777888888899999999999999999988854 7999999999999888876 56789999988754 1 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.+..||.|+|..-+..++.....+.++++...|++||-++.-...
T Consensus 113 ~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 113 HKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 5577899999998888888777889999999999999998875443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=100.74 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=78.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.++.....+++.+...++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++... .++++++.+|+...++
T Consensus 20 ~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 20 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 4556778888888888899999999999999999999999999999999999999987642 3589999999987443
Q ss_pred CCCCCCeeEEEhhhhhhccChHH
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~ 137 (485)
..||+|+++ ..++++.+.
T Consensus 100 ----~~~d~VvaN-lPY~Istpi 117 (294)
T PTZ00338 100 ----PYFDVCVAN-VPYQISSPL 117 (294)
T ss_pred ----cccCEEEec-CCcccCcHH
Confidence 468998876 456666543
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9e-09 Score=91.97 Aligned_cols=120 Identities=21% Similarity=0.237 Sum_probs=87.7
Q ss_pred hHHHHHHHHHcC---CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCC
Q 043471 269 IETTKEFVAKLD---LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTK 342 (485)
Q Consensus 269 ~~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~ 342 (485)
.+.++.+++.+. ...+..|||+|||+|.++..++..+ .++++++|.|+.++..|.+|+.. +...+.+.+.+++.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 345555555552 3345689999999999999998876 67999999999999999998863 44577777655544
Q ss_pred C-----CCCCCCccEEEEcccccccCC--------------------------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 343 K-----TYPENSFDVIYSRDTILHIQD--------------------------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 343 ~-----~~~~~~fD~i~~~~~~~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
. +...+++|+++|+....--+| ...++.-+.|.|+|||.+.+....
T Consensus 211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 2 345689999999854321111 334567788999999999888543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-09 Score=97.37 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=76.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+......+++.+...++.+|||||||+|.++..|++++.+|+++|+++.+++.++++....++++++.+|+...+. +
T Consensus 13 ~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~--~ 90 (253)
T TIGR00755 13 IDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL--P 90 (253)
T ss_pred CCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh--h
Confidence 55677788999888888999999999999999999999989999999999999999876555689999999988443 2
Q ss_pred CCCee---EEEhhhhhhccCh
Q 043471 118 EDSVD---MMFSNWLLMYLSD 135 (485)
Q Consensus 118 ~~~~D---~v~~~~~~~~~~~ 135 (485)
.+| +|+++. .+|++.
T Consensus 91 --~~d~~~~vvsNl-Py~i~~ 108 (253)
T TIGR00755 91 --DFPKQLKVVSNL-PYNISS 108 (253)
T ss_pred --HcCCcceEEEcC-ChhhHH
Confidence 456 677664 455554
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.7e-08 Score=81.91 Aligned_cols=123 Identities=23% Similarity=0.181 Sum_probs=89.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
..-.|..|+|+|||||.++...+-....+|+|+|+.+++++.++++...+..++.|+.+|+.+.. ..+|.|+.+..|
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC---CccceEEECCCC
Confidence 34457789999999999998877653369999999999999999999887789999999998874 679999998766
Q ss_pred ccc---CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 360 LHI---QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 360 ~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
--. .|++- +..+.+.- .++-+- + ...+.+.+.+...++|+++....
T Consensus 119 G~~~rhaDr~F-l~~Ale~s----~vVYsi-------------------H-~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 119 GSQRRHADRPF-LLKALEIS----DVVYSI-------------------H-KAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ccccccCCHHH-HHHHHHhh----heEEEe-------------------e-ccccHHHHHHHHHhcCCeEEEEE
Confidence 433 34433 33332221 111110 0 12256788999999999887654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.92 E-value=6e-08 Score=88.27 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC---CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC-C--CCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD---VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT-Y--PENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~-~--~~~~fD~i 353 (485)
....+||||+||.|........... .++...|.|+..++..++.++ ++...++|.++|+.+.. + -+...+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3556999999999998777766652 589999999999999999886 45555699999987641 1 13457999
Q ss_pred EEcccccccCC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhc------CCCCCCHHHHHHHHHhCCC
Q 043471 354 YSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQR------GYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 354 ~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~aGf 424 (485)
+.++.++.++| ....++.+.+.|.|||.++.+.-.+. +..+.....+..+ .....|..++.++.+.|||
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH--PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF 291 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH--PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGF 291 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC--cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCC
Confidence 99999999987 44568999999999999998843222 2222223333221 1355789999999999999
Q ss_pred eEEE
Q 043471 425 VDII 428 (485)
Q Consensus 425 ~~~~ 428 (485)
+-++
T Consensus 292 ~K~~ 295 (311)
T PF12147_consen 292 EKID 295 (311)
T ss_pred chhh
Confidence 8543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-09 Score=98.27 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+++.|++.+++++.. .+++++++|+.+.++++-.
T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~~~~~~~~~ 105 (272)
T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE--DNLTIIEGDALKVDLSELQ 105 (272)
T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc--CceEEEEChhhcCCHHHcC
Confidence 45678888888888999999999999999999998 45999999999999999988753 5899999999988765422
Q ss_pred ccEEEEcccc
Q 043471 350 FDVIYSRDTI 359 (485)
Q Consensus 350 fD~i~~~~~~ 359 (485)
+|.|+++-..
T Consensus 106 ~~~vv~NlPY 115 (272)
T PRK00274 106 PLKVVANLPY 115 (272)
T ss_pred cceEEEeCCc
Confidence 5888887653
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.3e-09 Score=96.08 Aligned_cols=88 Identities=23% Similarity=0.278 Sum_probs=75.9
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+..+++.+.+.++.+|||||||+|.++..++++ +.+++++|+++.+++.+++++.. ..+++++++|+.+.+++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-~~~v~ii~~D~~~~~~~-- 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-AGNVEIIEGDALKVDLP-- 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-CCCEEEEEeccccCCch--
Confidence 356778888888888999999999999999999998 67999999999999999988764 34899999999988764
Q ss_pred CccEEEEccccc
Q 043471 349 SFDVIYSRDTIL 360 (485)
Q Consensus 349 ~fD~i~~~~~~~ 360 (485)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999987653
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=91.55 Aligned_cols=122 Identities=19% Similarity=0.247 Sum_probs=86.6
Q ss_pred CccChhhhHHHhccCCCC---CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC---CCCCeEEE--
Q 043471 36 SDLDKEERPEVLSLLPPY---EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG---HFENVKFM-- 105 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~-- 105 (485)
.+-++++.+++++.+... ++..+||+|||+|.+++.++.. .+.|++||.|+.++..|.+++. ..+.+..+
T Consensus 127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence 444566777777777543 4556999999999999999876 5689999999999999887643 33556555
Q ss_pred --EeeccCCCCCCCCCCeeEEEhhhhhhccChH--------------------------HHHHHHHHHHhhcccCcEEEE
Q 043471 106 --CADVTSPDLTFSEDSVDMMFSNWLLMYLSDK--------------------------EVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 106 --~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~--------------------------~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..|.... .+...+++|+++|| ..++..+ ....++.-+.|+|+|||.+.+
T Consensus 207 ~me~d~~~~-~~l~~~~~dllvsN--PPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 207 IMESDASDE-HPLLEGKIDLLVSN--PPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred ccccccccc-cccccCceeEEecC--CCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 3344332 33457899999998 3333221 123556667799999999999
Q ss_pred Eec
Q 043471 158 RES 160 (485)
Q Consensus 158 ~~~ 160 (485)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 644
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.3e-09 Score=90.45 Aligned_cols=108 Identities=25% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCCCC----CCCCCcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTKKT----YPENSFD 351 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~~~----~~~~~fD 351 (485)
..++.+|||+|||+|..+..++... ..+|+.+|.++ .++..+.++... ..++.+...|-.+.. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 4567899999999999999888873 56999999998 889888887643 356777777654421 2346899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++..+++.-...+.+++-+.++|+|+|.+++....+
T Consensus 122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999999988888999999999999999987775433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-09 Score=96.00 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=84.5
Q ss_pred HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC--C
Q 043471 44 PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD--L 114 (485)
Q Consensus 44 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~--~ 114 (485)
.+++..+- ..+..+||||||++|+.++.+++. +.+|+.+|++++..+.|++.... ..+|+++.+|+.+.- +
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence 34444443 456779999999999999999975 67999999999999999986543 248999999987520 1
Q ss_pred C--CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 115 T--FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 115 ~--~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
. .+.++||+|+.-. ....+..++..+.++|+|||.|++....
T Consensus 114 ~~~~~~~~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHTTTTTSEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HhccCCCceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 0 1135899999864 2334778999999999999999885443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.9e-09 Score=98.87 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .+++++++|+.+... ..++||+|++...-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 4679999999999999999987 6799999999999999999886433 479999999977532 235799999975421
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.-...+++. ...++|++.++++.
T Consensus 252 --G~~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 --GIGKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred --CccHHHHHH-HHHcCCCeEEEEEC
Confidence 112233333 34478888888873
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.8e-09 Score=92.66 Aligned_cols=101 Identities=26% Similarity=0.422 Sum_probs=78.1
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC---CCCCCCccEEEEccccc
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK---TYPENSFDVIYSRDTIL 360 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~---~~~~~~fD~i~~~~~~~ 360 (485)
-+||||||.|.++..+|... +..++|+|++...+..+.+++...+ .|+.++++|+... -++++++|.|+.+..=-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDP 99 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDP 99 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCCC
Confidence 89999999999999999986 7899999999999999888776322 4899999998873 24568999998865433
Q ss_pred ccC--------CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQ--------DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~--------~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|.. -.+.+++.+.++|+|||.+.+.+
T Consensus 100 WpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 100 WPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 332 14678999999999999998884
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=97.28 Aligned_cols=144 Identities=15% Similarity=0.154 Sum_probs=91.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC---CCCeEEEE-ccCCCCC----CCCCCccEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL---KCSVEFEV-ADCTKKT----YPENSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~---~~~i~~~~-~d~~~~~----~~~~~fD~i 353 (485)
++.++||||||+|.+...++.+. +++++|+|+++.+++.|++++... ..++++.. .|..... .+.+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 46799999999998887777654 789999999999999999998743 35677754 2322221 235789999
Q ss_pred EEcccccccCCH-----HHHHHHH----------------HhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC-----
Q 043471 354 YSRDTILHIQDK-----PALFKSF----------------FKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY----- 407 (485)
Q Consensus 354 ~~~~~~~~~~~~-----~~~l~~~----------------~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~----- 407 (485)
+|+..++--... ..-.+.+ ..++.+||.+.|........ ..+....++
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gwftsmv 267 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLWFTSLV 267 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcEEEEEe
Confidence 999887643221 1112222 23344666655543221110 112222221
Q ss_pred -CCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 408 -DLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 408 -~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
...+...+.+.|++.|...+.+.++
T Consensus 268 ~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 268 SKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred eccCCHHHHHHHHHHcCCceEEEEEE
Confidence 2347889999999999976665443
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=107.39 Aligned_cols=109 Identities=17% Similarity=0.293 Sum_probs=81.1
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCC--CCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSP--DLTFSEDS 120 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~--~~~~~~~~ 120 (485)
.+++.+...++.+|||+|||+|.+++.+++.+.+|+|+|+++++++.|+++.. ...+++++.+|+.+. .+++.+++
T Consensus 283 ~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 362 (431)
T TIGR00479 283 RALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI 362 (431)
T ss_pred HHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCC
Confidence 45555666677899999999999999999988899999999999999998653 235899999998752 12233467
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|+..- ....- ...+++.+.+ ++|+++++++
T Consensus 363 ~D~vi~dP--Pr~G~--~~~~l~~l~~-l~~~~ivyvs 395 (431)
T TIGR00479 363 PDVLLLDP--PRKGC--AAEVLRTIIE-LKPERIVYVS 395 (431)
T ss_pred CCEEEECc--CCCCC--CHHHHHHHHh-cCCCEEEEEc
Confidence 99999752 22221 2356665554 8899988885
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-09 Score=107.62 Aligned_cols=106 Identities=14% Similarity=0.085 Sum_probs=81.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHH--cC-------CCCCeEEEEeeccCCCCCCCCCCe
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEV--NG-------HFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~--~~-------~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+++.+|||||||+|..+..+++.. .+|+++|+++++++.+++. .. ..++++++.+|..+. +...+++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-LRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-HHhCCCCC
Confidence 457899999999999999998874 5999999999999999983 11 125899999998763 22234689
Q ss_pred eEEEhhhhhhccChH---HHHHHHHHHHhhcccCcEEEEEe
Q 043471 122 DMMFSNWLLMYLSDK---EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 122 D~v~~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|+|++...-...+.. -.+++++.+++.|+|||.+++..
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999997543322211 02368999999999999999864
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=93.69 Aligned_cols=116 Identities=19% Similarity=0.280 Sum_probs=87.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.....+.+++.....+++.|||+|||+|.++.+.++.|+ +|++++-| +|.+.|++.... ..+|+.+.+.+++..+
T Consensus 162 TgTY~~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL 240 (517)
T KOG1500|consen 162 TGTYQRAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL 240 (517)
T ss_pred hhHHHHHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC
Confidence 345667888888888899999999999999999999976 89999955 688888886543 3479999999999766
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
| ++.|+|++--+-+.+-++...+..-...+.|+|.|..+-+
T Consensus 241 P---Ek~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 241 P---EKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred c---hhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 4 6899999854322222222333344456999999987654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=89.35 Aligned_cols=140 Identities=21% Similarity=0.334 Sum_probs=100.9
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CC-CCCeEEEEccCCCC--CCCCCC
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GL-KCSVEFEVADCTKK--TYPENS 349 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~-~~~i~~~~~d~~~~--~~~~~~ 349 (485)
++....+.|.+|||.+.|-|..+...+++ |+ .|+.++.+|+.++.|.-|-- ++ ...++++.+|+.+. .|++++
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 34445677999999999999999999998 66 99999999999998864421 11 13578999998774 478999
Q ss_pred ccEEEEccc-ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 350 FDVIYSRDT-ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 350 fD~i~~~~~-~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
||+|+.-.. |.+.. --+++.++++|+|||||+++--.-...... .| ..-+..+.+.|+++||.+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry-----------rG--~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY-----------RG--LDLPKGVAERLRRVGFEV 272 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc-----------cc--CChhHHHHHHHHhcCcee
Confidence 999987432 22211 246788999999999999865532211100 11 123567889999999997
Q ss_pred EEE
Q 043471 427 IIA 429 (485)
Q Consensus 427 ~~~ 429 (485)
+..
T Consensus 273 v~~ 275 (287)
T COG2521 273 VKK 275 (287)
T ss_pred eee
Confidence 764
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.2e-09 Score=88.09 Aligned_cols=114 Identities=21% Similarity=0.238 Sum_probs=81.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
+.-.|.+|+|+|||||.+++..+-.| ..|+|+|+.+++++.++++.... +++.|+.+|++++. +.+|.|+.|=
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~-----~~~dtvimNP 116 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR-----GKFDTVIMNP 116 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC-----CccceEEECC
Confidence 45678899999999999999998888 48999999999999999986543 47999999999854 6788877652
Q ss_pred h----hhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 129 L----LMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 129 ~----~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
. .-| .|. .++....+..+ .++--+. ..+.+++++..+..|+
T Consensus 117 PFG~~~rh-aDr---~Fl~~Ale~s~---vVYsiH~----------------a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 117 PFGSQRRH-ADR---PFLLKALEISD---VVYSIHK----------------AGSRDFVEKFAADLGG 161 (198)
T ss_pred CCcccccc-CCH---HHHHHHHHhhh---eEEEeec----------------cccHHHHHHHHHhcCC
Confidence 2 234 232 35555555432 1221111 1156788888888775
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-09 Score=91.92 Aligned_cols=115 Identities=19% Similarity=0.242 Sum_probs=86.5
Q ss_pred hhhHHHhcc-CCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEE-eeccCC
Q 043471 41 EERPEVLSL-LPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMC-ADVTSP 112 (485)
Q Consensus 41 ~~~~~~~~~-~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~-~d~~~~ 112 (485)
++.-.++.. +....+++|||||.+.|+.++.++.. ..+++.+|+++++.+.|++..... +++..+. +|..+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 333344444 34567789999999999999999986 348999999999999999986543 3577888 476543
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
-.....++||+|+.-. ....++.++..+.++|+|||.+++...
T Consensus 125 l~~~~~~~fDliFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 125 LSRLLDGSFDLVFIDA-----DKADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHhccCCCccEEEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 1113468999999753 233478899999999999999888543
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=89.19 Aligned_cols=108 Identities=21% Similarity=0.380 Sum_probs=86.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEE-ccCCCCC--CCCCCccE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEV-ADCTKKT--YPENSFDV 352 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~-~d~~~~~--~~~~~fD~ 352 (485)
.....++|||||.+.|..+.+++... +.+++.+|+++++.+.|++++. +...++.... +|..+.- ...++||+
T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 34467799999999999999999876 4699999999999999999987 4556688877 4664431 34689999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|+.-. .-.+.+.+++.+.++|+|||.+++-.....
T Consensus 136 iFIDa---dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 136 VFIDA---DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEEeC---ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 99843 124678999999999999999988765544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.8e-09 Score=101.78 Aligned_cols=105 Identities=10% Similarity=0.107 Sum_probs=77.5
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
+...++.+|||+|||+|.+++.++..+.+|+|+|+++.+++.|+++.. ...+++|+.+|+.+.... ..++||+|++.
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~D 307 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVN 307 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEEC
Confidence 333456799999999999999999888999999999999999998653 234799999999763211 12469999886
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...-+- ...+++.+. .++|+++++++..
T Consensus 308 --PPr~G~--~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 308 --PPRRGI--GKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --CCCCCC--cHHHHHHHH-hcCCCeEEEEEeC
Confidence 223221 235555554 4799999999743
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-08 Score=91.55 Aligned_cols=106 Identities=13% Similarity=0.224 Sum_probs=84.7
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-C----CCCC
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-Y----PENS 349 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~----~~~~ 349 (485)
...+..+|||||+++|..+.+++... +.+++++|.+++..+.|++++. ++..++++..+|+.+. + + ..++
T Consensus 115 ~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 34456799999999999999999865 4589999999999999999986 4556899999988553 1 1 1368
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
||+|+.-.. -.+...+++.+.++|+|||.+++-+..
T Consensus 195 FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 195 YDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 999998542 235778899999999999998887543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.8e-09 Score=92.16 Aligned_cols=103 Identities=20% Similarity=0.363 Sum_probs=82.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-----CCCCCccE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-----YPENSFDV 352 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-----~~~~~fD~ 352 (485)
...+||||||++|..+.++++.. +.+++.+|+++...+.|++.+. ++..+|+++.+|+.+. + .+.++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 45599999999999999999876 5799999999999999999886 5557899999998652 1 11358999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+.-.. -.+...++..+.++|+|||.+++-+..
T Consensus 125 VFiDa~---K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 125 VFIDAD---KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEST---GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEccc---ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 998652 235778899999999999999887544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.7e-09 Score=90.16 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=84.6
Q ss_pred HHHhccCC--CCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC------------CCCeEEE
Q 043471 44 PEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH------------FENVKFM 105 (485)
Q Consensus 44 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~------------~~~~~~~ 105 (485)
..+++.|. ..+|.+.||+|.|+|+++..++.. |..+.|||.-++.++.+++++.. .+++.++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 45666766 778999999999999999888865 55669999999999999987542 2478999
Q ss_pred EeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 106 ~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++|... ...+..+||.|++... ..+..+++...|+|||.+++-
T Consensus 150 vGDgr~--g~~e~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 150 VGDGRK--GYAEQAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eCCccc--cCCccCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 999887 4456789999999743 335667888899999999984
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=91.75 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=68.6
Q ss_pred HHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCe-EEEEeeccCCC---CCCC
Q 043471 44 PEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENV-KFMCADVTSPD---LTFS 117 (485)
Q Consensus 44 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~-~~~~~d~~~~~---~~~~ 117 (485)
..+++.++. .++.++||+|||+|.++..++++|+ +|+|+|++++|+....+.. +++ .+...|+.... .+..
T Consensus 64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~---~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD---ERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC---CCeeEeecCCcccCCHhHcCCC
Confidence 456666654 4678999999999999999999965 7999999998887622222 222 23333333211 2122
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-..+|+++++.+ ..+..+.+.|+| |.+++-
T Consensus 141 ~~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 141 FATFDVSFISLI----------SILPELDLLLNP-NDLTLL 170 (228)
T ss_pred ceeeeEEEeehH----------hHHHHHHHHhCc-CeEEEE
Confidence 347898888743 457789999999 776663
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.7e-09 Score=93.56 Aligned_cols=116 Identities=22% Similarity=0.289 Sum_probs=91.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
...+..+++++..+. +..++|+|||.|.....= -..-++|.|++...+..+++.. ......+|+.+ +|++
T Consensus 31 ~~Wp~v~qfl~~~~~--gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~--~p~~ 100 (293)
T KOG1331|consen 31 APWPMVRQFLDSQPT--GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALK--LPFR 100 (293)
T ss_pred CccHHHHHHHhccCC--cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCC----Cceeehhhhhc--CCCC
Confidence 344566777777665 889999999999543211 2347999999999998888742 22678889888 8889
Q ss_pred CCCeeEEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 118 EDSVDMMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.+||.+++..++||+.. ..+.++++++.|.|+|||...+..+...
T Consensus 101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 999999999999999964 4488999999999999999888655543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=94.33 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=99.8
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEe-eccCC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCA-DVTSP 112 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~-d~~~~ 112 (485)
.+++++..+.+.+.....+|..|||-=||||.+.....-.|.+|+|+|++..|++-|+.+.... ....+..+ |++.
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~- 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATN- 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccccc-
Confidence 5677788888888888999999999999999999999999999999999999999999887544 25555555 9988
Q ss_pred CCCCCCCCeeEEEhhhhhhc------cC-hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 113 DLTFSEDSVDMMFSNWLLMY------LS-DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~------~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|++++++|.|++--...- .. ++-..++++.+.++|++||++++..+
T Consensus 258 -lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 -LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 6677888999998422211 11 23378999999999999999999644
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=90.75 Aligned_cols=97 Identities=21% Similarity=0.276 Sum_probs=83.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+......+++.+...++..|||||+|.|.++..|++++..|+++|+.+.++...+++....++++.+.+|+.+.+++
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~-- 91 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP-- 91 (259)
T ss_pred cCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch--
Confidence 566778899999988889999999999999999999999999999999999999999987667999999999986643
Q ss_pred CC-CeeEEEhhhhhhccChHH
Q 043471 118 ED-SVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 118 ~~-~~D~v~~~~~~~~~~~~~ 137 (485)
.- .++.|++|- .++++.+-
T Consensus 92 ~l~~~~~vVaNl-PY~Isspi 111 (259)
T COG0030 92 SLAQPYKVVANL-PYNISSPI 111 (259)
T ss_pred hhcCCCEEEEcC-CCcccHHH
Confidence 21 678888874 67777644
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-09 Score=101.32 Aligned_cols=97 Identities=27% Similarity=0.499 Sum_probs=71.8
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEE---eCCHHHHHHHHHHhcCCCCCeEEEEcc--CCCCCCCCCCccEEEEcccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGI---DLSINMISFALERAIGLKCSVEFEVAD--CTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~---D~s~~~~~~a~~~~~~~~~~i~~~~~d--~~~~~~~~~~fD~i~~~~~~ 359 (485)
..+||+|||+|.++.+|.++ +..+..+ |..+.+++.|.++ | +-...+- -..+||++++||+|.|..++
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR--G----vpa~~~~~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER--G----VPAMIGVLGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred EEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc--C----cchhhhhhccccccCCccchhhhhccccc
Confidence 36999999999999999988 5433333 4556777777665 2 2222222 35689999999999998876
Q ss_pred ccc-CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 360 LHI-QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 360 ~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
... ++-..+|-++.|+|||||+++++.+.
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCc
Confidence 544 44456789999999999999998543
|
; GO: 0008168 methyltransferase activity |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.3e-08 Score=91.26 Aligned_cols=136 Identities=24% Similarity=0.301 Sum_probs=96.8
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~ 111 (485)
+.+.....++..+...+|++|||.|.|+|.++.+|++. ..+|+..|+.++.++.|++.+. ...++++...|+.+
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~ 103 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCE 103 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGC
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceec
Confidence 34456678889999999999999999999999999987 3599999999999999998743 33489999999975
Q ss_pred CCCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhc-ccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 112 PDLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWL-KVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 112 ~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
.-.+ -.++.+|.|+.-. ++ .-.++..+.++| +|||.++.-.++.. .-......+++
T Consensus 104 ~g~~~~~~~~~DavfLDl-----p~--Pw~~i~~~~~~L~~~gG~i~~fsP~ie---------------Qv~~~~~~L~~ 161 (247)
T PF08704_consen 104 EGFDEELESDFDAVFLDL-----PD--PWEAIPHAKRALKKPGGRICCFSPCIE---------------QVQKTVEALRE 161 (247)
T ss_dssp G--STT-TTSEEEEEEES-----SS--GGGGHHHHHHHE-EEEEEEEEEESSHH---------------HHHHHHHHHHH
T ss_pred ccccccccCcccEEEEeC-----CC--HHHHHHHHHHHHhcCCceEEEECCCHH---------------HHHHHHHHHHH
Confidence 2221 1136899998753 44 336889999999 99999998666543 23344455667
Q ss_pred cceecC
Q 043471 190 CQIQDA 195 (485)
Q Consensus 190 ~~~~~~ 195 (485)
.||.++
T Consensus 162 ~gf~~i 167 (247)
T PF08704_consen 162 HGFTDI 167 (247)
T ss_dssp TTEEEE
T ss_pred CCCeee
Confidence 788654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.6e-08 Score=94.07 Aligned_cols=88 Identities=22% Similarity=0.272 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++.+.+.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++... ..+++++.+|+.+.++
T Consensus 23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-- 99 (294)
T ss_pred HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--
Confidence 56778888888889999999999999999999987 568999999999999999987643 3589999999988764
Q ss_pred CCccEEEEccccc
Q 043471 348 NSFDVIYSRDTIL 360 (485)
Q Consensus 348 ~~fD~i~~~~~~~ 360 (485)
..||.|+++-..+
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 4689999865443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-08 Score=89.71 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=86.0
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCC---CCCCCCccEEEEcccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKK---TYPENSFDVIYSRDTI 359 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~---~~~~~~fD~i~~~~~~ 359 (485)
..+||||||.|.++..+|++. ...++|||+....+..|.+++...+. |+.+++.|+..+ -+++++.|-|..+..=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 479999999999999999986 57999999999999999999887776 999999998764 2445699999987654
Q ss_pred cccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
-|... .+.+++.+.++|+|||.+.+.+
T Consensus 130 PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 44421 5688999999999999999884
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=100.07 Aligned_cols=101 Identities=21% Similarity=0.278 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCCcchHHHHhhc------CcEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 55 GKTVLEFGAGIGRFTGELAKKA------GHVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~------~~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+..|||||||+|-++...++.+ .+|++||-++.++...+++ ++-.++|+++.+|+++..+| .++|+|+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 5789999999999987776653 4899999999988776554 22235899999999996643 4999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|-.+-.+...+-..+++....|.|||||+++-+
T Consensus 264 SElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 264 SELLGSFGDNELSPECLDAADRFLKPDGIMIPS 296 (448)
T ss_dssp E---BTTBTTTSHHHHHHHGGGGEEEEEEEESS
T ss_pred EeccCCccccccCHHHHHHHHhhcCCCCEEeCc
Confidence 865433333333667899999999999987653
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-07 Score=84.50 Aligned_cols=143 Identities=19% Similarity=0.136 Sum_probs=101.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc-----------------------------------
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI----------------------------------- 327 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~----------------------------------- 327 (485)
...+||--|||.|+++..+|.+ |..+.|.|.|--|+-..+=.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence 3569999999999999999998 8899999999988644332111
Q ss_pred ------CCCCCeEEEEccCCCCCCCC---CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH
Q 043471 328 ------GLKCSVEFEVADCTKKTYPE---NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF 398 (485)
Q Consensus 328 ------~~~~~i~~~~~d~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 398 (485)
....++....+|+.+...++ ++||+|+....+--.++.-+.++.|.++|||||..+=..+......+..
T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~-- 212 (270)
T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS-- 212 (270)
T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC--
Confidence 01235666677777764444 6899999997777778899999999999999996654433221111100
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 399 SEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
......-..+.+++..+++..||+++..+.
T Consensus 213 ---~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 213 ---IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 000011245789999999999999987655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=88.77 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..+++.+...++.+|||||||+|.++..++++. ..++++|+++.+++.++++... ..+++++++|+...+++ .
T Consensus 16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~~~~~~--~ 91 (253)
T TIGR00755 16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-YERLEVIEGDALKVDLP--D 91 (253)
T ss_pred HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-CCcEEEEECchhcCChh--H
Confidence 567788888888889999999999999999999984 5899999999999999988753 45799999999988764 4
Q ss_pred cc---EEEEcccccccCCHHHHHHHHHhcCCCCcE
Q 043471 350 FD---VIYSRDTILHIQDKPALFKSFFKWLKPGGT 381 (485)
Q Consensus 350 fD---~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 381 (485)
+| +|+++-.+ |+ ...++.++.. .+|+.
T Consensus 92 ~d~~~~vvsNlPy-~i--~~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 92 FPKQLKVVSNLPY-NI--SSPLIFKLLE--KPKFR 121 (253)
T ss_pred cCCcceEEEcCCh-hh--HHHHHHHHhc--cCCCc
Confidence 66 77776543 33 2344444443 44443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=88.07 Aligned_cols=106 Identities=24% Similarity=0.215 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC-----CCCeEEEEeeccCCC--CCCCCCCee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH-----FENVKFMCADVTSPD--LTFSEDSVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~--~~~~~~~~D 122 (485)
..++.+|||+|||+|..++.+++. ..+|+..|..+ .++..+.+... .+++++...|+.+.. .....++||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 456889999999999999999998 67999999999 88877765322 247888888876521 012346899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+++.+++.-.. .+.+++-+.++|+|+|.++++..
T Consensus 122 ~IlasDv~Y~~~~--~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 122 VILASDVLYDEEL--FEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp EEEEES--S-GGG--HHHHHHHHHHHBTT-TTEEEEEE
T ss_pred EEEEecccchHHH--HHHHHHHHHHHhCCCCEEEEEeC
Confidence 9999999987654 77899999999999999888644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-08 Score=98.63 Aligned_cols=111 Identities=33% Similarity=0.495 Sum_probs=96.0
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
...++..++|+|||.|....+++...++.++|+|.++..+..+..... .+...-.++.+|+.+.|+++++||.+.+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 356777999999999999999987657899999999999988877654 233344558899999999999999999999
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
+.+|.++...+++|++|+++|||.++..++...
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred ecccCCcHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 999999999999999999999999998876553
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=88.06 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=100.5
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC----CCCCeEEEEeeccCCCCCCCCCCee
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG----HFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
.....++|.+|||.+.|-|+.++..+++|+ +|+.++.+|+.++.|+-+-- ...+++++.+|+.+.--.|+|.+||
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence 344567899999999999999999999998 99999999999998876421 1137899999998865568899999
Q ss_pred EEEhhh-hhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 123 MMFSNW-LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 123 ~v~~~~-~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+|+--= -+.+.+.---+++.++++|+|+|||.++.-..++-.. . .-..-+....+.|.++||..
T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r------y--rG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR------Y--RGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc------c--ccCChhHHHHHHHHhcCcee
Confidence 998421 0112222224589999999999999998753332111 0 00113556778888999853
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.7e-08 Score=84.70 Aligned_cols=110 Identities=25% Similarity=0.347 Sum_probs=87.1
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC-----------CCCe
Q 043471 270 ETTKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL-----------KCSV 333 (485)
Q Consensus 270 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~-----------~~~i 333 (485)
.+...+++.|. +.||.+.||+|+|+|.++..++.-. |...+|||.-++.++.+++++... ..++
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 45566677775 8899999999999999988777544 445699999999999999987521 1467
Q ss_pred EEEEccCCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 334 ~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.++.+|......+..+||.|.+.... .+..+++...|+|||++++-
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGAAA------SELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred EEEeCCccccCCccCCcceEEEccCc------cccHHHHHHhhccCCeEEEe
Confidence 88899998876667899999997543 34457888899999999886
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.9e-08 Score=89.51 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCCcEEEEcCCCCc----chHHHHhhc-------CcEEEEeCChHHHHHHHHHcCC---------------------C--
Q 043471 54 EGKTVLEFGAGIGR----FTGELAKKA-------GHVIALDFIDSVIKKNEEVNGH---------------------F-- 99 (485)
Q Consensus 54 ~~~~vLDiGcG~G~----~~~~l~~~~-------~~v~giD~s~~~~~~a~~~~~~---------------------~-- 99 (485)
..-+|.-.||+||. +++.|.+.. .+|+|+|+|..+++.|+.-.-. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46799999999995 334444432 4799999999999998852110 0
Q ss_pred --------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 100 --------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 100 --------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..|.|.+.|+.+... ..+.||+|+|-+++-++..+...+++..++..|+|||+|++...
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 257888888876432 56789999999999999988899999999999999999999644
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-08 Score=90.35 Aligned_cols=107 Identities=21% Similarity=0.349 Sum_probs=82.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCC-CCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDL-TFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~-~~~~~~~D~v~~~ 127 (485)
.....+||||||.|.+...+|++.+ .++|||+....+..|.+++.. ..|+.+++.|+..+-- -+++++.|-|+.+
T Consensus 47 ~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 47 NNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred CCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence 3345899999999999999999954 799999999888887776543 2389999999987422 2445699999988
Q ss_pred hhhhccCh------HHHHHHHHHHHhhcccCcEEEEEe
Q 043471 128 WLLMYLSD------KEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 128 ~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.=.|... -....+++.+.+.|+|||.|.+.+
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 75333221 114589999999999999999963
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-07 Score=76.08 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=94.7
Q ss_pred CCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
..-+||||||+|..+..|++.. +..+.++|++|.+++...+.+.-...++..++.|+..-- ..++.|+++.+....-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l-~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL-RNESVDVLVFNPPYVP 122 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh-ccCCccEEEECCCcCc
Confidence 5689999999999999999876 468999999999999987777655567888898887642 3488999988754321
Q ss_pred c-----------------CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 362 I-----------------QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 362 ~-----------------~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
- .+ ...++.++-.+|.|.|.+++..... -.+.++.+.++
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~--------------------N~p~ei~k~l~ 182 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA--------------------NKPKEILKILE 182 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh--------------------cCHHHHHHHHh
Confidence 1 11 4566777888899999998873211 13567888899
Q ss_pred hCCCeEEEEe
Q 043471 421 DAGFVDIIAE 430 (485)
Q Consensus 421 ~aGf~~~~~~ 430 (485)
.-||.+....
T Consensus 183 ~~g~~~~~~~ 192 (209)
T KOG3191|consen 183 KKGYGVRIAM 192 (209)
T ss_pred hcccceeEEE
Confidence 9999876543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=9.1e-08 Score=83.96 Aligned_cols=116 Identities=21% Similarity=0.265 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCE---------EEEEeCCHHHHHHHHHHhc--CCCCCeEEEE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVH---------VVGIDLSINMISFALERAI--GLKCSVEFEV 337 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~---------v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~ 337 (485)
..+..++.....+++..|||.-||+|.++...+... +.. ++|+|+++.+++.|++++. +....+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 456677777788899999999999999998766543 334 8899999999999999986 4445689999
Q ss_pred ccCCCCCCCCCCccEEEEccccccc-CC-------HHHHHHHHHhcCCCCcEEEEE
Q 043471 338 ADCTKKTYPENSFDVIYSRDTILHI-QD-------KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 338 ~d~~~~~~~~~~fD~i~~~~~~~~~-~~-------~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.|+..+++.++++|+|+++..+..- .+ ...+++++.++|++...+++.
T Consensus 95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 9999998777899999998665432 11 345688999999993333333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-07 Score=77.03 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=97.6
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK 343 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~ 343 (485)
+...-.++++...++...|..|||+|.|||.++..+.++. ...+++++.|++.+...++... .+.++.+|+.++
T Consensus 31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p----~~~ii~gda~~l 106 (194)
T COG3963 31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP----GVNIINGDAFDL 106 (194)
T ss_pred CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC----CccccccchhhH
Confidence 3344567778888888999999999999999999998874 4589999999999999988876 456788888776
Q ss_pred C-----CCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 T-----YPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 ~-----~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
. +++..||.|+|.-.+-.++ -..++++.+...|.+||.++--.+.
T Consensus 107 ~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 107 RTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 3 4567799999987776664 4567899999999999998877665
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=90.95 Aligned_cols=111 Identities=19% Similarity=0.258 Sum_probs=84.8
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT- 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~- 115 (485)
.+++..+ ...+..+|||||+++|+.++.+++. +.+|+.+|++++..+.|++.... ..+|+++.+++.+. ++
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L~~ 146 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-LDQ 146 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-HHH
Confidence 3444443 3456779999999999999999875 56899999999999999987543 35899999998663 11
Q ss_pred C-----CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 F-----SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~-----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ ..++||+|+.-.- ...+..+++.+.++|+|||.|++...
T Consensus 147 l~~~~~~~~~fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 147 MIEDGKYHGTFDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHhccccCCcccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 1 1368999998632 33477899999999999999888433
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=86.10 Aligned_cols=146 Identities=16% Similarity=0.294 Sum_probs=107.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc----CcEEEEeCChHHHHHHHHHcCC--CCC-eEEEEeeccCCC-CCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA----GHVIALDFIDSVIKKNEEVNGH--FEN-VKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~giD~s~~~~~~a~~~~~~--~~~-~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
...+.+||||.||.|+..+-..... .+|.-.|+|+..++..++.... ..+ ++|.++|+.+.. +.--+...++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 3456799999999999987666552 4789999999999998886543 234 499999987742 2222456799
Q ss_pred EEhhhhhhccChHH-HHHHHHHHHhhcccCcEEEEEeccCCCCCc-------cccCCCC--CCCCChhHHHHHhhhccee
Q 043471 124 MFSNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRESCFHQSGD-------SKRKHNP--THYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 124 v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~ 193 (485)
++.++.+..+++.. ....++-+.+.+.|||+++.+--.+++... .++...+ +..++....-++++.+||.
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aGF~ 292 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAGFE 292 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcCCc
Confidence 99999999999855 667899999999999999997544443321 1112223 3445788889999999996
Q ss_pred cCCC
Q 043471 194 DASG 197 (485)
Q Consensus 194 ~~~g 197 (485)
....
T Consensus 293 K~~q 296 (311)
T PF12147_consen 293 KIDQ 296 (311)
T ss_pred hhhh
Confidence 5543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.1e-08 Score=94.61 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=77.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~ 359 (485)
.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++...+ .++++..+|+.+... ...+||+|++...-
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 35679999999999999999976 5799999999999999999886443 378999999866421 12469999997664
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
. .-...+++.+. .++|++.++++.
T Consensus 311 ~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 311 R--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred C--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 3 22345566665 479999999884
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.4e-07 Score=80.20 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=87.9
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC---CCCccEEEEcccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP---ENSFDVIYSRDTILH 361 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~---~~~fD~i~~~~~~~~ 361 (485)
.++|||||=+......-.. -..|+.||+.+. .-.+.+.|+.+.|.| .++||+|.++.++.+
T Consensus 53 lrlLEVGals~~N~~s~~~--~fdvt~IDLns~--------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNf 116 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ--------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNF 116 (219)
T ss_pred ceEEeecccCCCCcccccC--ceeeEEeecCCC--------------CCCceeeccccCCCCCCcccceeEEEEEEEEee
Confidence 6999999864433322221 247999999662 234567888887764 578999999999999
Q ss_pred cCCHH---HHHHHHHhcCCCCcE-----EEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 362 IQDKP---ALFKSFFKWLKPGGT-----VLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 362 ~~~~~---~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|++. +.++.+++.|+|+|. +++..+... ....++.+.+.|..+|+..||..+..+.
T Consensus 117 VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C-------------v~NSRy~~~~~l~~im~~LGf~~~~~~~ 181 (219)
T PF11968_consen 117 VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC-------------VTNSRYMTEERLREIMESLGFTRVKYKK 181 (219)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH-------------hhcccccCHHHHHHHHHhCCcEEEEEEe
Confidence 98754 679999999999999 777743221 1123677889999999999999887654
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=86.25 Aligned_cols=144 Identities=19% Similarity=0.153 Sum_probs=86.2
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCCC--
Q 043471 270 ETTKEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKTY-- 345 (485)
Q Consensus 270 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~~-- 345 (485)
.....+++.+.+ .++..|||+|||||.++..+++....+|+|+|+++.|+......- .++ .+...|+.....
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~----~~v~~~~~~ni~~~~~~~ 136 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD----ERVKVLERTNIRYVTPAD 136 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC----CCeeEeecCCcccCCHhH
Confidence 355667777765 367799999999999999999873348999999998887622221 122 233334443221
Q ss_pred ---CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC------CCCCHHHHH
Q 043471 346 ---PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY------DLHDVKSYG 416 (485)
Q Consensus 346 ---~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 416 (485)
.-..+|+++++.. ..+..+.+.|+| |.+++.- ++...... ......|. ...-...+.
T Consensus 137 ~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~--KPqFE~~~---~~~~~~giv~~~~~~~~~~~~~~ 202 (228)
T TIGR00478 137 IFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLF--KPQFEAGR---EKKNKKGVVRDKEAIALALHKVI 202 (228)
T ss_pred cCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEc--ChHhhhcH---hhcCcCCeecCHHHHHHHHHHHH
Confidence 1135676666443 247899999999 7766552 22111000 01111111 111245667
Q ss_pred HHHHhCCCeEEEEee
Q 043471 417 QMLKDAGFVDIIAED 431 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~ 431 (485)
..+.+.||++..+..
T Consensus 203 ~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 203 DKGESPDFQEKKIIF 217 (228)
T ss_pred HHHHcCCCeEeeEEE
Confidence 778889999877654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-08 Score=84.94 Aligned_cols=105 Identities=29% Similarity=0.330 Sum_probs=74.7
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHH---cCCCCCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEV---NGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~---~~~~~~~~~~~~d~~~~~~~ 115 (485)
.++.++.+. ..++.+|||+-||.|.+++.+|+ ++..|+++|++|.+++..++. +.-..++..+.+|..++.
T Consensus 90 ~Er~Ri~~~--v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-- 165 (200)
T PF02475_consen 90 TERRRIANL--VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-- 165 (200)
T ss_dssp HHHHHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----
T ss_pred HHHHHHHhc--CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--
Confidence 566777776 45588999999999999999998 577899999999999988775 333357899999998842
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
+.+.+|.|+++. .+.. ..++..+.+++++||.+.
T Consensus 166 -~~~~~drvim~l--p~~~----~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 166 -PEGKFDRVIMNL--PESS----LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --TT-EEEEEE----TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred -CccccCEEEECC--hHHH----HHHHHHHHHHhcCCcEEE
Confidence 278999999874 2222 258888999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.6e-08 Score=91.44 Aligned_cols=102 Identities=25% Similarity=0.337 Sum_probs=78.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+-.++.|||+|||+|.++...|+....+|+++|.|.-+ +.|++.+. ++...|++..+.+++..+|.++.|+|++-++
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 44678999999999999999998854599999997665 88888765 4456799999999988777889999999665
Q ss_pred cccc--CC-HHHHHHHHHhcCCCCcEEE
Q 043471 359 ILHI--QD-KPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 359 ~~~~--~~-~~~~l~~~~~~LkpgG~l~ 383 (485)
=+++ .+ ...+|-.=-+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 4333 12 3334444458999999874
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=86.89 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=109.6
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
-...+|+|.|.|..+..+...+. ++-++++....+-.+.+.+. ..|+.+-+|+.+. .|. -|+|++-+++||+.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp-~ik~infdlp~v~~~a~~~~---~gV~~v~gdmfq~-~P~--~daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP-HIKGINFDLPFVLAAAPYLA---PGVEHVAGDMFQD-TPK--GDAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC-CCceeecCHHHHHhhhhhhc---CCcceeccccccc-CCC--cCeEEEEeecccCC
Confidence 36899999999999999998654 69999999888887777763 1488888888776 443 46999999999996
Q ss_pred --CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-----------hhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 364 --DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-----------VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 364 --~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|-.++|++++..|+|||.+++.+...+..... ..+.......| .-.+..++..++.++||.+..+.
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~G-kert~~e~q~l~~~~gF~~~~~~ 329 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGG-KERTLKEFQALLPEEGFPVCMVA 329 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccc-eeccHHHHHhcchhhcCceeEEE
Confidence 57789999999999999999998744431111 11122222223 35678999999999999998877
Q ss_pred ecchHH
Q 043471 431 DRTEQF 436 (485)
Q Consensus 431 ~~~~~~ 436 (485)
....+|
T Consensus 330 ~~~~~~ 335 (342)
T KOG3178|consen 330 LTAYSY 335 (342)
T ss_pred eccCcc
Confidence 665544
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.1e-08 Score=87.70 Aligned_cols=103 Identities=15% Similarity=0.243 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-C-----CCCCcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-Y-----PENSFD 351 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~-----~~~~fD 351 (485)
...+|||||+++|..+.+++... +.+++.+|.++...+.|++.+. ++..+|+++.+++.+. + + ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 45599999999999999998765 5699999999999999999986 5567899999988653 1 1 126899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|+.-.- -......++.+.++|+|||.+++-+..
T Consensus 159 ~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 159 FIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred EEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 9998542 235677888999999999998876543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=83.75 Aligned_cols=121 Identities=13% Similarity=0.106 Sum_probs=82.4
Q ss_pred CccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~ 110 (485)
.+.+...++.+...+. ..++.+|||++||+|.+++.++.+|+ +|+++|.++.+++.+++.... ..+++++.+|+.
T Consensus 30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence 4445555666666653 34678999999999999999999976 899999999999988876432 236899999995
Q ss_pred CCCCC-C-CCC-CeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEec
Q 043471 111 SPDLT-F-SED-SVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRES 160 (485)
Q Consensus 111 ~~~~~-~-~~~-~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 160 (485)
+. +. . ..+ .||+|+.- ..+.... ....+..+.+ +|+++|.+++...
T Consensus 110 ~~-l~~~~~~~~~~dvv~~D-PPy~~~~--~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RA-LKFLAKKPTFDNVIYLD-PPFFNGA--LQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HH-HHHhhccCCCceEEEEC-cCCCCCc--HHHHHHHHHHCCCCCCCeEEEEEec
Confidence 42 11 1 122 36666653 2222221 3455555544 7999998888543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=80.14 Aligned_cols=104 Identities=14% Similarity=-0.006 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCC-C-C-CCC-CccEEEEc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKK-T-Y-PEN-SFDVIYSR 356 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~-~-~-~~~-~fD~i~~~ 356 (485)
.+.+|||++||+|.++..++.+...+|+++|.++.+++.+++++... ..+++++.+|+... . + ... .||+|+.-
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 57899999999999999999984348999999999999999988643 34688999998442 1 1 122 47877776
Q ss_pred ccccccCCHHHHHHHHH--hcCCCCcEEEEEec
Q 043471 357 DTILHIQDKPALFKSFF--KWLKPGGTVLISDY 387 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 387 (485)
..+.. .....+++.+. .+|+++|.+++...
T Consensus 129 PPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 129 PPFFN-GALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred cCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 65532 34555565554 46899998887743
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-07 Score=74.40 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=74.2
Q ss_pred HHHHHcCCCCCCEEEEECCCCCh-hHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGG-GDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD 351 (485)
.+.+.+....+.+|||||||+|. ++..|++. |..|+++|+++..++.++++ .++++.+|+.+..+. -+.+|
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~~~~y~~a~ 79 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPNLEIYKNAK 79 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh------CCeEEECcCCCCCHHHHhcCC
Confidence 34444545566899999999996 88888876 88999999999999999876 468899999876533 35699
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|.+...- ++....+.++.+. -|.-++|.....
T Consensus 80 liysirpp---~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 80 LIYSIRPP---RDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred EEEEeCCC---HHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 99986532 3444445555543 355577765443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=93.94 Aligned_cols=99 Identities=24% Similarity=0.311 Sum_probs=73.4
Q ss_pred CCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHH--hcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALER--AIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~--~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
+..|||||||+|.++...++.. ..+|++|+-++.++...+++ ..+++.+|+++.+|+.+...+ .++|+|||-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5689999999999987766553 25999999999988777654 346778999999999998765 589999994
Q ss_pred c--cccccCCHHHHHHHHHhcCCCCcEEE
Q 043471 357 D--TILHIQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 357 ~--~~~~~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
. +|-.-.-.++.|....|.|||||.++
T Consensus 266 lLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 LLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp --BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3 22222345678889999999999874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=89.37 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=56.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC----CCeEEEE-eeccCCC--CCCCCCCeeE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF----ENVKFMC-ADVTSPD--LTFSEDSVDM 123 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~----~~~~~~~-~d~~~~~--~~~~~~~~D~ 123 (485)
..+.++||||||+|.+...|+.+ +.+++|+|+++.+++.|++.+... .++++.+ .+..... +..+.+.||+
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 35679999999999888888765 779999999999999999875432 3577754 3333211 1124568999
Q ss_pred EEhhh
Q 043471 124 MFSNW 128 (485)
Q Consensus 124 v~~~~ 128 (485)
|+|+=
T Consensus 193 ivcNP 197 (321)
T PRK11727 193 TLCNP 197 (321)
T ss_pred EEeCC
Confidence 99983
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-07 Score=86.43 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh------cCcEEEEeCChHHHHHHHHHcC--CCCCe--EEEEeeccCCC--CCC--CC
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK------AGHVIALDFIDSVIKKNEEVNG--HFENV--KFMCADVTSPD--LTF--SE 118 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~--~~~~~--~~~~~d~~~~~--~~~--~~ 118 (485)
.++..|+|+|||+|.-+..|.+. ...++++|+|.++++.+.+++. ..+.+ .-+++|..+.- ++- ..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 34668999999999987655543 3579999999999999888876 34555 44888886531 111 12
Q ss_pred CCeeEEE-hhhhhhccChHHHHHHHHHHHh-hcccCcEEEEE
Q 043471 119 DSVDMMF-SNWLLMYLSDKEVEKLAERMVK-WLKVGGYIFFR 158 (485)
Q Consensus 119 ~~~D~v~-~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~ 158 (485)
+...+|+ ...++..+++.+...+|+++.+ .|+|||.+++.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 3355655 4558999998889999999999 99999999995
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.60 E-value=8e-08 Score=77.37 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=70.3
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
..+--.|++++|+|||.|.++...+.-..-.|+|+|+.|++++.+++++.....++++.++|+.++.+..+.||.++.+.
T Consensus 43 TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 43 TYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred hhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 33434688999999999998865554434589999999999999999998877788999999999887788999999987
Q ss_pred cccc
Q 043471 358 TILH 361 (485)
Q Consensus 358 ~~~~ 361 (485)
.|..
T Consensus 123 pFGT 126 (185)
T KOG3420|consen 123 PFGT 126 (185)
T ss_pred CCCc
Confidence 7753
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.2e-07 Score=83.27 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=74.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~ 117 (485)
.....+.+..+.++++.|||||.|||.++..|.++|.+|+++|+.+.|+....++.... +..+.+.+|..+.++
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--- 121 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--- 121 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC---
Confidence 55678888889999999999999999999999999999999999999999999886543 478999999988665
Q ss_pred CCCeeEEEhhhh
Q 043471 118 EDSVDMMFSNWL 129 (485)
Q Consensus 118 ~~~~D~v~~~~~ 129 (485)
..||.++++.-
T Consensus 122 -P~fd~cVsNlP 132 (315)
T KOG0820|consen 122 -PRFDGCVSNLP 132 (315)
T ss_pred -cccceeeccCC
Confidence 46899998753
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.7e-07 Score=89.98 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
+.+.+||.||+|.|..+..+.+. ..+|+.+|+++++++.|++.... .++++++.+|.... +...+++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-LEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-HhhCCCCccEE
Confidence 35679999999999999988875 35899999999999999997642 36899999998774 23345789999
Q ss_pred Ehhhh-------hhccChHHHHHHHH-HHHhhcccCcEEEEE
Q 043471 125 FSNWL-------LMYLSDKEVEKLAE-RMVKWLKVGGYIFFR 158 (485)
Q Consensus 125 ~~~~~-------~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~ 158 (485)
++-.. ..++- -.++++ .+.+.|+|||.+++.
T Consensus 181 i~D~~dp~~~~~~~~Ly---t~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGDLADPVEGGPCYQLY---TKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred EecCCCccccCcchhhc---cHHHHHHHHHHhcCCCcEEEEe
Confidence 97531 11111 236787 899999999998874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=83.01 Aligned_cols=121 Identities=20% Similarity=0.175 Sum_probs=85.8
Q ss_pred cCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC--c---------EEEEeCChHHHHHHHHHcCC---CC
Q 043471 35 ASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--H---------VIALDFIDSVIKKNEEVNGH---FE 100 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~---------v~giD~s~~~~~~a~~~~~~---~~ 100 (485)
..++.+.....++......++..|||--||+|.+.+..+..+. . ++|.|+++++++.|+++... ..
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~ 88 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVED 88 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CG
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCC
Confidence 4456777788888888888899999999999999988776633 3 77999999999999987532 23
Q ss_pred CeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc-cCh-----HHHHHHHHHHHhhcccCcEEEE
Q 043471 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY-LSD-----KEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 101 ~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.+.+.+.|+.. +++.++++|+|+++--+.. ++. .-+.++++++.++|++...+++
T Consensus 89 ~i~~~~~D~~~--l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 89 YIDFIQWDARE--LPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GEEEEE--GGG--GGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ceEEEecchhh--cccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 68999999998 5567789999999854432 222 2256788999999999444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=85.78 Aligned_cols=142 Identities=17% Similarity=0.174 Sum_probs=91.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHH-hhcCcEEEEeCChHHHHHHHHHcCC-------------------C-----------C
Q 043471 52 PYEGKTVLEFGAGIGRFTGELA-KKAGHVIALDFIDSVIKKNEEVNGH-------------------F-----------E 100 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~-~~~~~v~giD~s~~~~~~a~~~~~~-------------------~-----------~ 100 (485)
..+|.++||||||+-.+...-+ +...+++..|+++.-++..++-... . .
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 3457799999999976643333 4466899999999877655442211 0 1
Q ss_pred Ce-EEEEeeccCCCCCCCC-----CCeeEEEhhhhhhccC--hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCC
Q 043471 101 NV-KFMCADVTSPDLTFSE-----DSVDMMFSNWLLMYLS--DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKH 172 (485)
Q Consensus 101 ~~-~~~~~d~~~~~~~~~~-----~~~D~v~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 172 (485)
.| ..+.+|+...+ |+.. ..||+|++.+++.-.. .+++.++++++.++|||||.|++....-...-......
T Consensus 134 ~Vk~Vv~cDV~~~~-pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~ 212 (256)
T PF01234_consen 134 AVKQVVPCDVTQPN-PLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHK 212 (256)
T ss_dssp HEEEEEE--TTSSS-TTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEE
T ss_pred hhceEEEeeccCCC-CCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEe
Confidence 13 47778987643 2222 3599999999988774 35589999999999999999999765432222222334
Q ss_pred CCCCCCChhHHHHHhhhcceec
Q 043471 173 NPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.+....+.+++++.++++|+..
T Consensus 213 F~~l~l~ee~v~~al~~aG~~i 234 (256)
T PF01234_consen 213 FPCLPLNEEFVREALEEAGFDI 234 (256)
T ss_dssp EE---B-HHHHHHHHHHTTEEE
T ss_pred cccccCCHHHHHHHHHHcCCEE
Confidence 5556668999999999999954
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=80.96 Aligned_cols=85 Identities=27% Similarity=0.347 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++...+++++.|||+|.|||.++..+.++ +.+|+++++++.|+....++.++.. ...++..+|+...++|
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP- 122 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-
Confidence 56788899999999999999999999999999998 8899999999999999999998766 6889999999887654
Q ss_pred CCccEEEEcc
Q 043471 348 NSFDVIYSRD 357 (485)
Q Consensus 348 ~~fD~i~~~~ 357 (485)
-||.++++-
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 589999853
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6e-08 Score=78.06 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+..+|++++|+|||+|.++...+-. ...|+|+|+.|++++.++++..... +++++++|+.++ .+..+.||.++.+
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl--e~~~g~fDtaviN 121 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL--ELKGGIFDTAVIN 121 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch--hccCCeEeeEEec
Confidence 35567899999999999999666554 4479999999999999998876544 789999999984 4456899999887
Q ss_pred hhh
Q 043471 128 WLL 130 (485)
Q Consensus 128 ~~~ 130 (485)
--+
T Consensus 122 ppF 124 (185)
T KOG3420|consen 122 PPF 124 (185)
T ss_pred CCC
Confidence 433
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-07 Score=79.99 Aligned_cols=98 Identities=23% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
+.++..|+|+-||.|.++..+++.. +..|+++|++|.+++..++++. ++..++...++|..+... ...||.|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~l 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNL 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECC
Confidence 6788999999999999999999832 5689999999999999999876 455678999999988754 68899999865
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEE
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
. +.-..+|..+.+++++||.+-
T Consensus 178 p----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 P----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred h----HHHHHHHHHHHHHhcCCcEEE
Confidence 3 234567889999999999764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.54 E-value=9e-08 Score=87.57 Aligned_cols=143 Identities=20% Similarity=0.138 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc------------------CC-----------CCCe
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI------------------GL-----------KCSV 333 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~------------------~~-----------~~~i 333 (485)
.|.++||||||+-..-..-+...--+++..|.++..++..++.+. +. ...|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998544332232322489999999988886665443 10 1113
Q ss_pred E-EEEccCCCCC-CCC-----CCccEEEEccccccc-CC---HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH
Q 043471 334 E-FEVADCTKKT-YPE-----NSFDVIYSRDTILHI-QD---KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI 402 (485)
Q Consensus 334 ~-~~~~d~~~~~-~~~-----~~fD~i~~~~~~~~~-~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 402 (485)
+ ++.+|+.+.+ +.. .+||+|++..+++.. +| ...+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 3 6677887753 322 259999999999887 34 556799999999999999998654332110000
Q ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 403 KQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.....-..+.+.+++.++++||++...+
T Consensus 211 ~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 HKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred EecccccCCHHHHHHHHHHcCCEEEecc
Confidence 0001123578999999999999998877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.4e-07 Score=81.76 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=75.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC-
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN- 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~- 348 (485)
..++++++...+.++..|||||+|.|.++..|+++ +.+|+++++++.+++..++... ...+++++.+|+...+++.-
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcCcchhhc
Confidence 45788999999999999999999999999999999 6799999999999999999875 34589999999999887643
Q ss_pred CccEEEEccc
Q 043471 349 SFDVIYSRDT 358 (485)
Q Consensus 349 ~fD~i~~~~~ 358 (485)
.++.|+++-.
T Consensus 95 ~~~~vVaNlP 104 (259)
T COG0030 95 QPYKVVANLP 104 (259)
T ss_pred CCCEEEEcCC
Confidence 6788888744
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-07 Score=91.93 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=89.9
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC----CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH----FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d~~ 110 (485)
..+++...+..+..... |++|||+=|=||.++++.|..|+ +||+||+|..+++.|+++... ...+.|+++|+.
T Consensus 201 fFlDqR~~R~~l~~~~~--GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393)
T COG1092 201 FFLDQRDNRRALGELAA--GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393)
T ss_pred eeHHhHHHHHHHhhhcc--CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence 33444444444444333 89999999999999999999998 999999999999999997432 236899999997
Q ss_pred CCCC--CCCCCCeeEEEhh------hh-hhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 111 SPDL--TFSEDSVDMMFSN------WL-LMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 111 ~~~~--~~~~~~~D~v~~~------~~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.-- .-...+||+|+.- .- ..+--...+...+..+.++|+|||+++++...
T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 6410 1123489999963 00 01111233778899999999999999997654
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.1e-07 Score=78.22 Aligned_cols=120 Identities=15% Similarity=0.156 Sum_probs=89.6
Q ss_pred CcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-CCCCCeeEEEhhhhhhccC
Q 043471 56 KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-FSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~D~v~~~~~~~~~~ 134 (485)
.++|||||=+......-. .-.+|+.||+++ ..-.+.++|..+.++| -+.+.||+|.++.++.++|
T Consensus 53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns-------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP 118 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNS-------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVP 118 (219)
T ss_pred ceEEeecccCCCCccccc-CceeeEEeecCC-------------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCC
Confidence 599999998665443321 123699999987 2345678888775554 3467999999999999998
Q ss_pred hHH-HHHHHHHHHhhcccCcE-----EEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCCC
Q 043471 135 DKE-VEKLAERMVKWLKVGGY-----IFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASG 197 (485)
Q Consensus 135 ~~~-~~~~l~~~~~~L~pgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (485)
++. +-++++.+++.|+|+|. +++.-+.. --.+..|.+.+.|..+++..||.....
T Consensus 119 ~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~--------Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 119 DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP--------CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch--------HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 654 88999999999999999 77754432 123455668899999999999965443
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-07 Score=88.23 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=78.3
Q ss_pred CCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
+.+|||++||+|.++..++...+ .+|+++|+++.+++.+++++...+ .++++.++|+..+....++||+|+... +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C--
Confidence 46899999999999999987655 489999999999999999885332 246688888865421146799999954 2
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+..++..+.+.++|||.++++
T Consensus 135 -Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -CCcHHHHHHHHHHhcCCCEEEEE
Confidence 45577888878889999999998
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.9e-07 Score=84.76 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
...+||.||+|.|..+..+++.. ..+++.+|+++.+++.|++.+... ..+++++.+|.... ....++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 34699999999999999888754 358999999999999999987522 36899999988663 223578999998
Q ss_pred ccccccc---C----CHHHHHH-HHHhcCCCCcEEEEE
Q 043471 356 RDTILHI---Q----DKPALFK-SFFKWLKPGGTVLIS 385 (485)
Q Consensus 356 ~~~~~~~---~----~~~~~l~-~~~~~LkpgG~l~i~ 385 (485)
-.. .-. + -..++++ .+++.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 521 110 0 1346787 899999999998775
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-06 Score=86.76 Aligned_cols=110 Identities=24% Similarity=0.245 Sum_probs=84.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCCCccEEEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPENSFDVIYS 355 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~~fD~i~~ 355 (485)
...++.+|||++||.|.=+..+++.+ ...+++.|+++.-++..++++..++ .++.+.+.|...+. ...+.||.|+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 56889999999999999999999876 3589999999999999999988655 46778888877642 22367999995
Q ss_pred ----cc--cccccCC----------------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 356 ----RD--TILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 356 ----~~--~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
++ ++..-++ ..++|..+.+.|||||+++-++...
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 32 2221111 2567899999999999998886543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-07 Score=83.36 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=88.2
Q ss_pred CcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC---CCeEEEEe
Q 043471 34 KASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF---ENVKFMCA 107 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~ 107 (485)
...+.....++.+...+.. .++.++||+-||+|.+++..+.+|+ +|+.||.++..++..+++.... .++..+.+
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 4556667788888888775 4899999999999999999888875 8999999999999888875432 35888888
Q ss_pred eccCCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHH--hhcccCcEEEEEec
Q 043471 108 DVTSPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV--KWLKVGGYIFFRES 160 (485)
Q Consensus 108 d~~~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 160 (485)
|+...- +.....+||+|++- ..+..... ...++..+. .+|+++|.+++...
T Consensus 100 d~~~~l~~~~~~~~~fDiIflD-PPY~~~~~-~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 100 DAFKFLLKLAKKGEKFDIIFLD-PPYAKGLY-YEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp SHHHHHHHHHHCTS-EEEEEE---STTSCHH-HHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred CHHHHHHhhcccCCCceEEEEC-CCcccchH-HHHHHHHHHHCCCCCCCEEEEEEec
Confidence 865321 11135799999986 33333431 367888877 79999999998654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=84.73 Aligned_cols=89 Identities=19% Similarity=0.186 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--C
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--Y 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~ 345 (485)
-++.++++.+.+.++..+||.+||.|..+..+++.++ .+|+|+|.++.+++.|++++.. ..+++++++|+.++. .
T Consensus 6 Vll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 6 VLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred ccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHHHHHHH
Confidence 3567889999888999999999999999999999873 7999999999999999998866 568999999998753 1
Q ss_pred CC--CCccEEEEcccc
Q 043471 346 PE--NSFDVIYSRDTI 359 (485)
Q Consensus 346 ~~--~~fD~i~~~~~~ 359 (485)
+. .++|.|++....
T Consensus 85 ~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 85 AEGLGKVDGILLDLGV 100 (296)
T ss_pred HcCCCccCEEEECCCc
Confidence 22 279999996543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-07 Score=88.57 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=73.6
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCC------C
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLT------F 116 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~------~ 116 (485)
.+++.+... +.+|||+|||+|.+++.|++...+|+|+|+++++++.|+++.. ...+++++.+|+.+.... +
T Consensus 189 ~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 189 WACEVTQGS-KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred HHHHHhhcC-CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc
Confidence 334444322 3479999999999999999988899999999999999998753 234799999998763110 0
Q ss_pred ---C-----CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 117 ---S-----EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 117 ---~-----~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
. ...||+|+.. ....+- .+.+++.+. +|+++++++..
T Consensus 268 ~~~~~~~~~~~~~d~v~lD--PPR~G~--~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVD--PPRAGL--DPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred ccccccccccCCCCEEEEC--CCCCCC--cHHHHHHHH---cCCcEEEEEcC
Confidence 0 1137988874 112221 234555554 48899999743
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-06 Score=80.82 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=79.5
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccE
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
+++...--.++-|||+|||+|.++...++....+|++++. .+|.++|++.+++. ..+|.++.+.+++..+| ++.|+
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~Dv 246 (517)
T KOG1500|consen 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDV 246 (517)
T ss_pred HHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCc-hhccE
Confidence 3333323346789999999999999888874459999997 57889999988754 47899999999998876 78999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|++-.+=.-+- ..-+..-.+++.|||.|.++=+
T Consensus 247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMFPT 281 (517)
T ss_pred EEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCc
Confidence 99954322221 1222233456999999997543
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.9e-07 Score=89.35 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCC--------------C
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFS--------------E 118 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~--------------~ 118 (485)
+.+|||++||+|.+++.+++...+|+|+|+++.+++.|+++.. ...+++++.+|+.+.--.+. .
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 3579999999999999999888899999999999999998753 23489999999876310010 1
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+||+|+.. .....- .+++++.+.+ |+++++++..
T Consensus 287 ~~~D~v~lD--PPR~G~--~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 287 YNFSTIFVD--PPRAGL--DDETLKLVQA---YERILYISCN 321 (362)
T ss_pred CCCCEEEEC--CCCCCC--cHHHHHHHHc---cCCEEEEEeC
Confidence 258999875 122221 2345555544 7888888743
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=75.56 Aligned_cols=124 Identities=24% Similarity=0.251 Sum_probs=91.1
Q ss_pred EEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+++|||+|.|.-+..++-.. ..+++.+|....-+...+.....++ .|+++++..+++ +....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEEEeehhc----
Confidence 89999999999888877655 6799999999988887777665444 379999999988 4456889999998753
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
....+++-+...|++||.+++.-- .. ... ........++..|.+...+...
T Consensus 126 ~l~~l~~~~~~~l~~~G~~l~~KG---~~-----~~~----------El~~~~~~~~~~~~~~~~v~~~ 176 (184)
T PF02527_consen 126 PLDKLLELARPLLKPGGRLLAYKG---PD-----AEE----------ELEEAKKAWKKLGLKVLSVPEF 176 (184)
T ss_dssp SHHHHHHHHGGGEEEEEEEEEEES---S-------HH----------HHHTHHHHHHCCCEEEEEEEEE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcC---CC-----hHH----------HHHHHHhHHHHhCCEEeeeccc
Confidence 678899999999999999888721 10 000 1234556677777777766544
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-06 Score=88.36 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=83.6
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.+.+|.+|||++||.|.=+..++.. ...|++.|+++..++..++++... .++.....|...+.-. ..+.||.|+
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~-~~~~fD~IL 188 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA-LPETFDAIL 188 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh-chhhcCeEE
Confidence 6678999999999999999999886 248999999999999888876543 4677888887763212 235799999
Q ss_pred ----hhhh--hhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 126 ----SNWL--LMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 126 ----~~~~--~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
|++. +..-++. ...++|.++.++|||||+|+-++.++.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 6543 2221111 025788999999999999988877654
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.43 E-value=4.4e-07 Score=79.66 Aligned_cols=123 Identities=17% Similarity=0.135 Sum_probs=85.6
Q ss_pred CchHHHHHHHHHcCC--CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCC
Q 043471 267 GGIETTKEFVAKLDL--KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTK 342 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~ 342 (485)
.....-+.++..+.. -++.++||+-||+|.++...+.+...+|+.||.++..++..++++..++ .++.++..|...
T Consensus 24 T~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~ 103 (183)
T PF03602_consen 24 TTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK 103 (183)
T ss_dssp SSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH
T ss_pred CcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH
Confidence 333444555555543 3688999999999999999998844599999999999999999987443 457888888543
Q ss_pred C----CCCCCCccEEEEcccccccCCHHHHHHHHH--hcCCCCcEEEEEeccc
Q 043471 343 K----TYPENSFDVIYSRDTILHIQDKPALFKSFF--KWLKPGGTVLISDYCK 389 (485)
Q Consensus 343 ~----~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 389 (485)
. .....+||+|++-.....-.....++..+. .+|+++|.+++.....
T Consensus 104 ~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 104 FLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2 113678999999776543211477888887 7999999999886443
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-07 Score=83.44 Aligned_cols=111 Identities=25% Similarity=0.358 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~~~~~ 348 (485)
..+...++... .+..++|+|||.|..+. ....+.++|.|++...+..++.. +. ....+|+..+|+.+.
T Consensus 34 p~v~qfl~~~~--~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~------~~~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 34 PMVRQFLDSQP--TGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS------GGDNVCRADALKLPFREE 102 (293)
T ss_pred HHHHHHHhccC--CcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC------CCceeehhhhhcCCCCCC
Confidence 45666666654 37789999999985432 22346899999999998887654 23 577899999999999
Q ss_pred CccEEEEcccccccC---CHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 349 SFDVIYSRDTILHIQ---DKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
+||.+++..++||+. -...+++++.|+|+|||...+..+....
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 999999999999994 4678999999999999999888665543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=85.94 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=65.9
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC-
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED- 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~- 119 (485)
+++++.+.+.++..+||.+||.|.++..+++.. .+|+|+|.++++++.|+++.....+++++++|..++.-..+.+
T Consensus 9 ~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~ 88 (296)
T PRK00050 9 DEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGL 88 (296)
T ss_pred HHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCC
Confidence 577888887888999999999999999999883 6899999999999999988654347888888887642111122
Q ss_pred -CeeEEEhh
Q 043471 120 -SVDMMFSN 127 (485)
Q Consensus 120 -~~D~v~~~ 127 (485)
++|.|++.
T Consensus 89 ~~vDgIl~D 97 (296)
T PRK00050 89 GKVDGILLD 97 (296)
T ss_pred CccCEEEEC
Confidence 67777753
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-07 Score=88.25 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
+.+|||++||+|..++.++.. + .+|+++|+++++++.++++.. ...++.+.++|+..+ + ...+.||+|++.= +
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~-l-~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL-L-HEERKFDVVDIDP-F 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH-H-hhcCCCCEEEECC-C
Confidence 468999999999999999876 3 389999999999999988642 234677899998763 1 1145799999852 1
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.. ...++..+.+.++|||+++++
T Consensus 135 ---Gs--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GS--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CC--cHHHHHHHHHHhcCCCEEEEE
Confidence 22 236888878889999999997
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.8e-06 Score=79.34 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=80.3
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-----CCeEEEEccCCCCC-CCCCCccEEEEcc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-----CSVEFEVADCTKKT-YPENSFDVIYSRD 357 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-----~~i~~~~~d~~~~~-~~~~~fD~i~~~~ 357 (485)
.+||-||.|.|..++.+.+.. -.+++.+|+.+..++.|++.+.... .+++++..|..+.- -..++||+|++-.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999875 3599999999999999999887332 68899999986642 1124899999853
Q ss_pred cccccC----CHHHHHHHHHhcCCCCcEEEEE
Q 043471 358 TILHIQ----DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 358 ~~~~~~----~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.=.--+ -...+++.+++.|+|+|.++..
T Consensus 158 tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 221001 2478999999999999999888
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.3e-06 Score=84.88 Aligned_cols=103 Identities=29% Similarity=0.328 Sum_probs=82.7
Q ss_pred CCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCCC----CCCCCccEEEE
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKKT----YPENSFDVIYS 355 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~~----~~~~~fD~i~~ 355 (485)
|++||++-|=||.++.+.+.. |+ +||+||.|...++.|++++. ++. .++.++++|+.+.- -...+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999877 76 99999999999999999986 332 45789999986641 12458999998
Q ss_pred ccc-c--------cccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 356 RDT-I--------LHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 356 ~~~-~--------~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
-.. | .-..+...++..+.++|+|||.++++..
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 432 1 1124677889999999999999999853
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=80.34 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=82.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC-
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF- 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~- 116 (485)
.++...+.+++.+...++..|||||+|+|.++..|++.+.+|+++|+++.+.+..+++....++++++.+|+.+++.+.
T Consensus 14 ~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 14 VDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp EHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 4566778899998888999999999999999999999999999999999999999998776679999999999855431
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHh
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVK 147 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~ 147 (485)
..+...+|+++. .++++. .++.++..
T Consensus 94 ~~~~~~~vv~Nl-Py~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNL-PYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEE-TGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEe-cccchH----HHHHHHhh
Confidence 124566777764 335544 45555554
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-05 Score=71.18 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=103.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC-
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP- 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~- 346 (485)
...++..+.+.||.+|||-|.|+|.++.++++..+ .+++..|+-..-.+.|++.+. +++.++++.+-|++..-|.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 55778888999999999999999999999999872 499999999888888888776 5678999999999987654
Q ss_pred -CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE-ecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 347 -ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS-DYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 347 -~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
+..+|.|+. -++.+-.++--++..||.+|.-+++ .++- + -.+.-.+.|.+.||
T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPCI----------E----------Qvqrtce~l~~~gf 228 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPCI----------E----------QVQRTCEALRSLGF 228 (314)
T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHHH----------H----------HHHHHHHHHHhCCC
Confidence 457888876 4677888888888899988753333 1110 0 12345678888999
Q ss_pred eEEEEe
Q 043471 425 VDIIAE 430 (485)
Q Consensus 425 ~~~~~~ 430 (485)
..+..-
T Consensus 229 ~~i~~v 234 (314)
T KOG2915|consen 229 IEIETV 234 (314)
T ss_pred ceEEEE
Confidence 876543
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5e-06 Score=70.11 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
.......+||||||+|..+-+|++. +..+.++|++|.+.+...+.+... .++..+++|+.+- ...+++|+++-
T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~---l~~~~VDvLvf 116 (209)
T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSG---LRNESVDVLVF 116 (209)
T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhh---hccCCccEEEE
Confidence 3344678999999999999999987 346889999999998766543221 3578888887652 23478888765
Q ss_pred hhh---------------hhcc----ChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHh
Q 043471 127 NWL---------------LMYL----SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 127 ~~~---------------~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (485)
+=. ..+. +.....+++..+-.+|.|.|.+++.....+ .++.+-.++
T Consensus 117 NPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---------------~p~ei~k~l 181 (209)
T KOG3191|consen 117 NPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN---------------KPKEILKIL 181 (209)
T ss_pred CCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc---------------CHHHHHHHH
Confidence 411 1111 122245777778889999999999644221 445555677
Q ss_pred hhcce
Q 043471 188 KECQI 192 (485)
Q Consensus 188 ~~~~~ 192 (485)
++-|+
T Consensus 182 ~~~g~ 186 (209)
T KOG3191|consen 182 EKKGY 186 (209)
T ss_pred hhccc
Confidence 77665
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.7e-06 Score=76.31 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=89.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC-----------------------------------
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH----------------------------------- 98 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~----------------------------------- 98 (485)
.+.+||--|||.|+++..+|.+|..|.|.|.|--|+=..+-....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~ 135 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVD 135 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcC
Confidence 456899999999999999999999999999999996443332110
Q ss_pred -------CCCeEEEEeeccCCCCCCC---CCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc
Q 043471 99 -------FENVKFMCADVTSPDLTFS---EDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD 167 (485)
Q Consensus 99 -------~~~~~~~~~d~~~~~~~~~---~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 167 (485)
.++++...||..+.. .+ .++||+|+..+ ++. ..+.-++++.+.++|||||+.+=--+.......
T Consensus 136 p~~~~~~~~~~sm~aGDF~e~y--~~~~~~~~~d~VvT~F---FIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~ 210 (270)
T PF07942_consen 136 PSSELPSPSNLSMCAGDFLEVY--GPDENKGSFDVVVTCF---FIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEP 210 (270)
T ss_pred cccccCCCCceeEecCccEEec--CCcccCCcccEEEEEE---EeechHHHHHHHHHHHHHhccCCEEEecCCccccCCC
Confidence 024566666666532 22 37999998873 333 344889999999999999953322222211111
Q ss_pred cccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 168 SKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
.........-.+.+.+..+.++.||...
T Consensus 211 ~~~~~~~sveLs~eEi~~l~~~~GF~~~ 238 (270)
T PF07942_consen 211 MSIPNEMSVELSLEEIKELIEKLGFEIE 238 (270)
T ss_pred CCCCCCcccCCCHHHHHHHHHHCCCEEE
Confidence 0000111122367889999999998553
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.5e-06 Score=83.34 Aligned_cols=108 Identities=14% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC------
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT------ 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~------ 344 (485)
+..+++.+...+ .+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++++.+|+.+..
T Consensus 187 ~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~ 264 (353)
T TIGR02143 187 LEWACEVTQGSK-GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGV 264 (353)
T ss_pred HHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhc
Confidence 334444443333 479999999999999999875 599999999999999999986443 36899999986531
Q ss_pred --C---C-----CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 --Y---P-----ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 --~---~-----~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+ . ...||+|+.-.. .-.-.+.+++.+.+ |++.++++.
T Consensus 265 ~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC 311 (353)
T TIGR02143 265 REFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISC 311 (353)
T ss_pred cccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEc
Confidence 0 0 123799888554 11223455555544 788888884
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.35 E-value=6e-07 Score=79.95 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=71.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCc-EEEEeCChHHHHHHHHHc----------C-CCCCeEE
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGH-VIALDFIDSVIKKNEEVN----------G-HFENVKF 104 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~giD~s~~~~~~a~~~~----------~-~~~~~~~ 104 (485)
........+++.+...+++.++|||||.|......+-. +++ ++|||+.+...+.|+... + ...++++
T Consensus 26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 44456678888999889999999999999988776654 665 999999999887766421 1 1246888
Q ss_pred EEeeccCCCCC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 105 MCADVTSPDLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 105 ~~~d~~~~~~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..+|+.+.+.. ..-...|+|++++.. ++++ ....+.+....||||.+++-
T Consensus 106 ~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 106 IHGDFLDPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELKPGARIIS 156 (205)
T ss_dssp ECS-TTTHHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS-TT-EEEE
T ss_pred eccCccccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCCCCCEEEE
Confidence 88887653211 001357999998753 3332 55677888889999887654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.2e-06 Score=78.13 Aligned_cols=115 Identities=23% Similarity=0.353 Sum_probs=73.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc---------CC-CCCeEEEEc
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI---------GL-KCSVEFEVA 338 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~---------~~-~~~i~~~~~ 338 (485)
..+..+++.+.+++++..+|||||.|......+...++ +.+||++.+...+.|+.... +. ..++++..+
T Consensus 29 ~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 29 EFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 56778899999999999999999999998887766666 49999999988887765332 11 246778888
Q ss_pred cCCCCCCCC---CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 339 DCTKKTYPE---NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 339 d~~~~~~~~---~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|+.+.++.. ...|+|++++... -++....|.++...||||-+++-.
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 887643211 3479999988653 235556678888889998876543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-07 Score=79.38 Aligned_cols=136 Identities=19% Similarity=0.269 Sum_probs=91.2
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
..++||+|+|.|.++..++..+. .|++++.|..|....+++- ..+. ...+..-.+-+||+|.|.+.+.--.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~fe-evyATElS~tMr~rL~kk~------ynVl--~~~ew~~t~~k~dli~clNlLDRc~ 183 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFE-EVYATELSWTMRDRLKKKN------YNVL--TEIEWLQTDVKLDLILCLNLLDRCF 183 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHH-HHHHHHhhHHHHHHHhhcC------Ccee--eehhhhhcCceeehHHHHHHHHhhc
Confidence 46999999999999999988753 7999999999998877652 2221 1111111234699999999987777
Q ss_pred CHHHHHHHHHhcCCC-CcEEEEEecccCC--------CCCChhHHHHHHhcCCCCC-CHHHHHHHHHhCCCeEEEE
Q 043471 364 DKPALFKSFFKWLKP-GGTVLISDYCKSF--------GTPSVEFSEYIKQRGYDLH-DVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 364 ~~~~~l~~~~~~Lkp-gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~aGf~~~~~ 429 (485)
++-++|+.++.+|+| +|+++++-..... +.+. .-..+..-.|..+. ....+.++|+++||.+..+
T Consensus 184 ~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw 258 (288)
T KOG3987|consen 184 DPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-RPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW 258 (288)
T ss_pred ChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-CchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh
Confidence 899999999999999 9998887432211 1111 11112222232211 2346778899999976543
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.2e-06 Score=71.37 Aligned_cols=102 Identities=35% Similarity=0.566 Sum_probs=75.3
Q ss_pred EEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCC--eEEEEccCCC--CCCCC-CCccEEEEcccc
Q 043471 287 VLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCS--VEFEVADCTK--KTYPE-NSFDVIYSRDTI 359 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~--i~~~~~d~~~--~~~~~-~~fD~i~~~~~~ 359 (485)
++|+|||+|... .+..... ..++|+|+++.++..++..... ... +.+...|... .++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999866 3333322 4899999999999986655432 212 6788888776 67766 489999 54444
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
.+..+....+.++.+.|+|+|.+++.......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 44434889999999999999999998765543
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.9e-07 Score=77.46 Aligned_cols=121 Identities=20% Similarity=0.198 Sum_probs=87.7
Q ss_pred hhhhcCCCcCccChhhhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeE
Q 043471 27 EAMMLDSKASDLDKEERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVK 103 (485)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~ 103 (485)
+.+.....-+-.+++.-+.++..-++ ..+.++||+|+|.|.++..++....+|++.++|..|....+++.- +
T Consensus 82 NG~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~y-----n 156 (288)
T KOG3987|consen 82 NGFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNY-----N 156 (288)
T ss_pred ccccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCC-----c
Confidence 44444444455666666666655432 245799999999999999999998899999999999998887532 1
Q ss_pred EEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhccc-CcEEEEE
Q 043471 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKV-GGYIFFR 158 (485)
Q Consensus 104 ~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 158 (485)
.+. .+ + +.--+-+||+|.|.+.+...-+ .-+.++.++.+|+| +|.++++
T Consensus 157 Vl~-~~-e--w~~t~~k~dli~clNlLDRc~~--p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 157 VLT-EI-E--WLQTDVKLDLILCLNLLDRCFD--PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred eee-eh-h--hhhcCceeehHHHHHHHHhhcC--hHHHHHHHHHHhccCCCcEEEE
Confidence 111 11 1 2112347999999999877666 34899999999999 8988875
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=79.24 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=79.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEE--EeeccCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFM--CADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~--~~d~~~~~~~~~~ 118 (485)
.++.+.++...+.+|||+|||+|..+..+.+. -.+++++|.|+.|++.++.......+.... .........++
T Consensus 23 ~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-- 100 (274)
T PF09243_consen 23 SELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF-- 100 (274)
T ss_pred HHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC--
Confidence 34444456667889999999999876555543 358999999999999998876543321111 11111101112
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...|+|+++++|..+++..+.++++++.+.+.+ .|+|.|+..
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 234999999999999877788999999888876 788876653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.4e-06 Score=80.22 Aligned_cols=113 Identities=25% Similarity=0.269 Sum_probs=90.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~ 115 (485)
..++.++++.... |.+|||+=||.|.+++.+|+.|.. |+++|++|.++...++++. -.+.+..+++|.... .
T Consensus 176 ~~ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev--~ 251 (341)
T COG2520 176 STERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREV--A 251 (341)
T ss_pred hHHHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHh--h
Confidence 3677788887665 899999999999999999999875 9999999999999988643 223589999999884 3
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...+.+|.|+.+.. .. ...++..+.+.+++||.+...+...
T Consensus 252 ~~~~~aDrIim~~p----~~--a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 252 PELGVADRIIMGLP----KS--AHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred hccccCCEEEeCCC----Cc--chhhHHHHHHHhhcCcEEEEEeccc
Confidence 33388999998742 12 3367888888999999998876654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.5e-06 Score=71.23 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=74.1
Q ss_pred EEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCC--eEEEEeeccCCCCCCCC-CCeeEEEhhhhhh
Q 043471 58 VLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFEN--VKFMCADVTSPDLTFSE-DSVDMMFSNWLLM 131 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~~~~~-~~~D~v~~~~~~~ 131 (485)
++|+|||+|... .+++. +..++|+|+++.++..++........ +.+..++.....+++.. ..||++.+....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 44443 24899999999999986665432122 68888887652244555 4899994444444
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.. ....+.++.+.++|+|.+++......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 444 56899999999999999999866543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.2e-06 Score=75.29 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=74.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC----C-CCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG----L-KCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~----~-~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
+..++||=||.|.|..++.+++. ..+|+-+|+++.+++.+++.++. + .++++++. .+.+ -..++||+|++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~--~~~~~fDVIIvD 146 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLD--LDIKKYDLIICL 146 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhh--ccCCcCCEEEEc
Confidence 44579999999999999999987 45999999999999999996652 1 24666654 2221 123689999986
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.. ..+.+.+.+++.|+|||.++.+
T Consensus 147 s~-----~~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 147 QE-----PDIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CC-----CChHHHHHHHHhcCCCcEEEEC
Confidence 43 3478889999999999999887
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=74.67 Aligned_cols=111 Identities=16% Similarity=0.211 Sum_probs=79.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhc-CCCCCeEE--EEccCCCC-
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAI-GLKCSVEF--EVADCTKK- 343 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~-~~~~~i~~--~~~d~~~~- 343 (485)
..+.+. +.++..|+|+|||.|.=+..|.+.+ ..+++++|+|..+++.+.+++. ..-..+++ +++|+.+.
T Consensus 68 ~~Ia~~--i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319)
T TIGR03439 68 SDIAAS--IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319)
T ss_pred HHHHHh--cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH
Confidence 344444 3566789999999998766655543 3689999999999999999887 33234544 77887552
Q ss_pred ---CC--CCCCccEEEEcc-cccccC--CHHHHHHHHHh-cCCCCcEEEEE
Q 043471 344 ---TY--PENSFDVIYSRD-TILHIQ--DKPALFKSFFK-WLKPGGTVLIS 385 (485)
Q Consensus 344 ---~~--~~~~fD~i~~~~-~~~~~~--~~~~~l~~~~~-~LkpgG~l~i~ 385 (485)
+- ......+|+..+ ++..++ ....+|+++++ .|+|||.++|.
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 11 123456777654 677774 34568999999 99999999886
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.3e-07 Score=79.71 Aligned_cols=109 Identities=28% Similarity=0.321 Sum_probs=68.2
Q ss_pred HHHHHHHHHcC-CCCC--CEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFVAKLD-LKPG--QKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~~~~~-~~~~--~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
-++.++.+.+. +.++ .+|||+||++|+++..+.++. ..+|+|+|+.+.. . ..++....+|+.+.
T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~-~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------P-LQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S--TTEEBTTGGGEEEE
T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------c-ccceeeeecccchhh
Confidence 35667777777 5554 899999999999999999986 4799999998761 0 01344444444321
Q ss_pred -------CCC--CCCccEEEEcccccccC----C-------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 -------TYP--ENSFDVIYSRDTILHIQ----D-------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 -------~~~--~~~fD~i~~~~~~~~~~----~-------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.++ .++||+|+|-.+..... | ....+.-+...|+|||.+++-.+.
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 011 26899999976332221 1 223345555779999999887544
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-06 Score=81.79 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=71.3
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-C-CC--------------C
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-T-YP--------------E 347 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~-~~--------------~ 347 (485)
.+|||++||+|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++++.+|+.+. + +. .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 579999999999999998874 599999999999999999886433 3789999998652 1 10 1
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.+||+|+.-..- ..-.+++++.+.+ |++.++++.
T Consensus 287 ~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 287 YNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred CCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEe
Confidence 258999986542 1223455555544 788888884
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=79.25 Aligned_cols=113 Identities=27% Similarity=0.314 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC--
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP-- 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~-- 346 (485)
.++...++.+...++.+|||+=||.|.++..+|++ ..+|+|+|+++.+++.|+++++.++ .|++|..++.++....
T Consensus 280 kl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 280 KLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 34566667777788899999999999999999987 5699999999999999999988554 4699999998886422
Q ss_pred -CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 -ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 -~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+|.|+....=.-. .+.+++.+.+ ++|-..+++++
T Consensus 359 ~~~~~d~VvvDPPR~G~--~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 359 EGYKPDVVVVDPPRAGA--DREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred ccCCCCEEEECCCCCCC--CHHHHHHHHh-cCCCcEEEEeC
Confidence 3578999984321111 2245555554 67888898884
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-05 Score=68.40 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHcCC--CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCC
Q 043471 266 TGGIETTKEFVAKLDL--KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCT 341 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~ 341 (485)
+.....-+.++..+.. -.|.++||+=+|+|.++...+.+....++.||.+...+...++++..++ .+..++..|..
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~ 103 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL 103 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH
Confidence 3333445566777754 4788999999999999999999955699999999999999999988665 77888888887
Q ss_pred CC--CCCC-CCccEEEEccccccc-CCHHHHHHH--HHhcCCCCcEEEEEec
Q 043471 342 KK--TYPE-NSFDVIYSRDTILHI-QDKPALFKS--FFKWLKPGGTVLISDY 387 (485)
Q Consensus 342 ~~--~~~~-~~fD~i~~~~~~~~~-~~~~~~l~~--~~~~LkpgG~l~i~~~ 387 (485)
.. .... ++||+|+.-..++.- -+....+.. -...|+|+|.+++...
T Consensus 104 ~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 104 RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 43 1112 359999998777621 222333433 4578999999999854
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.7e-06 Score=74.45 Aligned_cols=141 Identities=16% Similarity=0.210 Sum_probs=86.0
Q ss_pred CEEEEECCCC--ChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCC--CC----CCCcc--
Q 043471 285 QKVLDVGCGI--GGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKT--YP----ENSFD-- 351 (485)
Q Consensus 285 ~~vLDiGcG~--G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~--~~----~~~fD-- 351 (485)
...||||||- -.....++++. .++|+.+|..|..+..++..+.+... ...++.+|+.+.. +. .+-+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 4899999994 34566676655 68999999999999999998876441 3789999987631 00 12233
Q ss_pred ---EEEEcccccccC---CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-hhHHHHHHhcC--CCCCCHHHHHHHHHhC
Q 043471 352 ---VIYSRDTILHIQ---DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-VEFSEYIKQRG--YDLHDVKSYGQMLKDA 422 (485)
Q Consensus 352 ---~i~~~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~a 422 (485)
.|+...++||++ ++..+++.++..|.||.+|+|+.......... ..........+ ..+.|.+++..+|.
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~-- 227 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFD-- 227 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCT--
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcC--
Confidence 577788999994 58899999999999999999997765322111 22233333322 34567888888887
Q ss_pred CCeEE
Q 043471 423 GFVDI 427 (485)
Q Consensus 423 Gf~~~ 427 (485)
||+.+
T Consensus 228 g~elv 232 (267)
T PF04672_consen 228 GLELV 232 (267)
T ss_dssp TSEE-
T ss_pred CCccC
Confidence 88765
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=75.71 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEE-EEccCCCCCCCCCCccEEEEcccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEF-EVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
...+|||+|||+|..+..+.+.++ .+++++|.|+.|++.++..+......-.. ...+......+-.+.|+|++.++|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L 112 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVL 112 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhh
Confidence 345999999999987766655442 48999999999999998876543311111 111111111122334999999999
Q ss_pred cccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 360 LHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 360 ~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
..+++ ...+++.+.+.+.+ .++|.+.+...+. ......++.|.+.|+.++
T Consensus 113 ~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf----------------~~i~~aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 113 NELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGF----------------RRIAEARDQLLEKGAHVV 164 (274)
T ss_pred hcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHH----------------HHHHHHHHHHhhCCCceE
Confidence 98875 44556666665655 8888876543211 123456666676777665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.8e-06 Score=80.44 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhc--------CCCEEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEc
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK--------FDVHVVGIDLSINMISFALERAI--GLK-CSVEFEVA 338 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~ 338 (485)
..+.-+++.+...++.+|+|.+||+|.++..+.+. ...+++|+|+++.++..|+-++. +.. ....+..+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 34455556667777889999999999999887763 25799999999999999887653 222 12357777
Q ss_pred cCCCCCCC--CCCccEEEEccccccc--C------C-------------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 339 DCTKKTYP--ENSFDVIYSRDTILHI--Q------D-------------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 339 d~~~~~~~--~~~fD~i~~~~~~~~~--~------~-------------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|....+.. ...||+|+++..+.-. . + .-.++..+.+.|++||++++..+
T Consensus 113 d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 113 DSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp -TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 76554432 4789999998655322 0 0 12478999999999999877754
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.4e-06 Score=78.85 Aligned_cols=112 Identities=29% Similarity=0.358 Sum_probs=79.3
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCCC---
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKKT--- 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~~--- 344 (485)
.+..+... ..+++|||+=|=||.++...+.. |+ +|+.||.|..+++.|++++. ++. .+++++..|+.+.-
T Consensus 114 nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 114 NRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp HHHHHHHH--CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH
T ss_pred hHHHHHHH--cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH
Confidence 33444443 34789999999999999987765 65 89999999999999999976 443 57889999886521
Q ss_pred CCCCCccEEEEccc-cc-----ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 YPENSFDVIYSRDT-IL-----HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 ~~~~~fD~i~~~~~-~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
-..++||+|++-.. |. -..+..++++.+.++|+|||.++++.
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 02468999999432 11 11356778999999999999988774
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.6e-05 Score=74.35 Aligned_cols=115 Identities=27% Similarity=0.324 Sum_probs=86.9
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCCCC
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPENS 349 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~~~ 349 (485)
..+...+|.+|||++++.|+=+.++++.. +..|+++|.++.-++..++++..++ .++...+.|....+ ...++
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCc
Confidence 45678899999999999999999888876 3467999999999999999998666 34677777776543 22236
Q ss_pred ccEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 350 FDVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 350 fD~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
||.|+.- +++.--++ ..++|..+.++|||||.|+.++.....
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 9999983 33311121 456789999999999999998765443
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-06 Score=80.02 Aligned_cols=109 Identities=20% Similarity=0.273 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC--C--CCCeEEEEeeccCCCCC-CCCCCeeEEEh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG--H--FENVKFMCADVTSPDLT-FSEDSVDMMFS 126 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~-~~~~~~D~v~~ 126 (485)
.++++|||+=|=||.++++.+..|+ +|++||.|..+++.++++.. . ..+++|++.|+.+.--. -..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3578999999999999999988886 79999999999999998632 2 24789999999752100 12468999997
Q ss_pred h---hhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 N---WLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~---~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
- +.=.-. -...+.+.+..+.++|+|||.|+++..+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs 240 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS 240 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3 110011 1233778899999999999999886553
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-05 Score=74.94 Aligned_cols=128 Identities=19% Similarity=0.209 Sum_probs=98.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..+|..|||+=+|.|.++..+|.....+|+++|++|.+++..++++. +....+..+++|....+...+.+|-|++...
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34589999999999999999998843459999999999999999986 4445688999999887654488999999653
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
.+...++..+.+.+++||.+-+.+......... .....+.......|.++
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~--------------~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYYEFVPEDDIEE--------------RPEKRIKSAARKGGYKV 315 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEEeccchhhccc--------------chHHHHHHHHhhccCcc
Confidence 456778889999999999998887655432211 12345666666676543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.3e-06 Score=75.25 Aligned_cols=105 Identities=15% Similarity=0.060 Sum_probs=79.1
Q ss_pred hhHHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCC
Q 043471 42 ERPEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSP 112 (485)
Q Consensus 42 ~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~ 112 (485)
...+++-+.+ .+.+++||=||.|-|...+.+.+...+|+.+|+.+++++.+++.+. ..++++++.. +.+
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~- 134 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD- 134 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-
Confidence 3445554443 4567899999999999999999986699999999999999999543 2357777652 111
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-..++||+|++-.. .+ +.+++.+++.|+|||.++..
T Consensus 135 ---~~~~~fDVIIvDs~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 135 ---LDIKKYDLIICLQE----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred ---ccCCcCCEEEEcCC----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 12368999997642 21 36889999999999999885
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=69.93 Aligned_cols=120 Identities=17% Similarity=0.162 Sum_probs=85.1
Q ss_pred EEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 287 VLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 287 vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
|.||||--|.+..+|+++.- .+++++|+++..++.|++++. ++..++++..+|..+.--+.+..|.|+..++=-.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~-- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE-- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence 68999999999999999842 279999999999999999987 4557899999997653212233788887654221
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
-..++|++....++....|+++ +......+++.|.+.||.+++-.
T Consensus 79 lI~~ILe~~~~~~~~~~~lILq----------------------P~~~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 79 LIIEILEAGPEKLSSAKRLILQ----------------------PNTHAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHTGGGGTT--EEEEE----------------------ESS-HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhHHHhccCCeEEEe----------------------CCCChHHHHHHHHHCCCEEEEeE
Confidence 3566777777778777788887 22346789999999999988643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-06 Score=76.23 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=67.1
Q ss_pred HHHhccCC-CC--CCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC----
Q 043471 44 PEVLSLLP-PY--EGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD---- 113 (485)
Q Consensus 44 ~~~~~~~~-~~--~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---- 113 (485)
.++.+... .. ++.++||+||++|.++..+.+++ ..|+|+|+.+. ...+++.++++|+.+..
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHH
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHh
Confidence 34555555 22 45899999999999999999987 79999999986 11145666666654321
Q ss_pred C--CCC--CCCeeEEEhhhhhhccCh---------HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 114 L--TFS--EDSVDMMFSNWLLMYLSD---------KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 114 ~--~~~--~~~~D~v~~~~~~~~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ .+. ...||+|+|-.+.....+ .-....+.-+.+.|+|||.+++...
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 1 011 268999999774322211 1133455556678999999888644
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-06 Score=71.83 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=81.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
....+.+.|+|+|+|.++...++...+|++|+..|...+.|+++.. ...|++.+.+|+.+.+ | ...|+|+|-+.
T Consensus 30 ~va~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--f--e~ADvvicEml 105 (252)
T COG4076 30 EVAEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--F--ENADVVICEML 105 (252)
T ss_pred HHhhhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--c--cccceeHHHHh
Confidence 3445789999999999999999998899999999999999999843 3458999999998855 3 67899999653
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
=.-+-++....++..+.+.||-.+.++-..
T Consensus 106 DTaLi~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hHHhhcccccHHHHHHHHHhhcCCccccHH
Confidence 222222225578888888999999887643
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.4e-06 Score=71.36 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=71.2
Q ss_pred cEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHH---HcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 57 TVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEE---VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~---~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
+++|||+|.|.-++.|+=. ..+|+.+|.+..-+...+. ..+. +|++.+.+.+++ +....+||+|++-.+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~---~~~~~~fd~v~aRAv-- 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEE---PEYRESFDVVTARAV-- 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHH---TTTTT-EEEEEEESS--
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecc---cccCCCccEEEeehh--
Confidence 8999999999999888754 5689999999877665554 3332 589999999987 224689999999754
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+ ...++.-+...+++||.+++.
T Consensus 125 --~~--l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 125 --AP--LDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp --SS--HHHHHHHHGGGEEEEEEEEEE
T ss_pred --cC--HHHHHHHHHHhcCCCCEEEEE
Confidence 33 567888899999999998884
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.2e-06 Score=74.35 Aligned_cols=71 Identities=24% Similarity=0.350 Sum_probs=51.4
Q ss_pred cEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCC-eeEEEhh
Q 043471 57 TVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDS-VDMMFSN 127 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~-~D~v~~~ 127 (485)
.|+|+.||.|..++.||+.+.+|++||+++..++.|+.++.- ..++.++++|+.+..-.+..+. +|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 699999999999999999999999999999999999987543 3489999999987421122222 7999864
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=8.2e-06 Score=69.81 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=86.2
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...++.++++-..-.|++|||+|+|+|-.+...+......|+..|+.|......+-+.+..+..+.+...|... ++.
T Consensus 65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g---~~~ 141 (218)
T COG3897 65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG---SPP 141 (218)
T ss_pred HHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC---CCc
Confidence 34455555555566789999999999999988887744589999999999888888877666778888888765 357
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcE-EEEEecc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT-VLISDYC 388 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~-l~i~~~~ 388 (485)
.||+|+...+++.-+-..+++. ..+.|+..|. +++-++.
T Consensus 142 ~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 142 AFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 7999999998876555666666 5555555554 4544443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.14 E-value=3e-06 Score=78.30 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCC-Cee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSED-SVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~-~~D 122 (485)
.+++.+||=||-|.|..+..+.+.. .+|+.+|+++..++.|++... ..++++++.+|.... +.-..+ +||
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-l~~~~~~~yD 152 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-LKETQEEKYD 152 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-HHTSSST-EE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-HHhccCCccc
Confidence 3468899999999999999998874 589999999999999998643 236899999998653 111234 899
Q ss_pred EEEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|+.-..-...+... -..+++.+++.|+|||.+++..
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 153 VIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 999643211111110 2479999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.4e-05 Score=69.63 Aligned_cols=127 Identities=23% Similarity=0.209 Sum_probs=93.7
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCCC-ccEEEEccccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPENS-FDVIYSRDTIL 360 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~-fD~i~~~~~~~ 360 (485)
+.+++|||+|.|.-+..++-.. +.+++-+|....-+...++....++. |++++++.+++..- ... ||+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVA- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehcc-
Confidence 5799999999999888877333 67899999998888888777766663 59999999988752 223 9999998753
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+...++.-+..++|+||.+++.-.... .--..+........|+.+..+...+
T Consensus 146 ---~L~~l~e~~~pllk~~g~~~~~k~~~~------------------~~e~~e~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 146 ---SLNVLLELCLPLLKVGGGFLAYKGLAG------------------KDELPEAEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred ---chHHHHHHHHHhcccCCcchhhhHHhh------------------hhhHHHHHHHHHhhcCcEEEEEEee
Confidence 677888889999999998755411110 0113456677777888887765543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4e-06 Score=83.28 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=83.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC-CCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-SEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-~~~~ 120 (485)
...++.+...++.+|||+=||.|.+++.||++..+|+|+|+++++++.|++.+.. ..|++|+.++++++.... ....
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~ 362 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYK 362 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCC
Confidence 3455666777888999999999999999999999999999999999999987543 347999999998853222 2357
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+|+.. ...-+- -+.+++.+.+ ++|-.+++++..
T Consensus 363 ~d~VvvD--PPR~G~--~~~~lk~l~~-~~p~~IvYVSCN 397 (432)
T COG2265 363 PDVVVVD--PPRAGA--DREVLKQLAK-LKPKRIVYVSCN 397 (432)
T ss_pred CCEEEEC--CCCCCC--CHHHHHHHHh-cCCCcEEEEeCC
Confidence 8999875 122221 1245555554 567778888743
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=75.14 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=84.6
Q ss_pred HHHhccCC---CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCC
Q 043471 44 PEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSP 112 (485)
Q Consensus 44 ~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~ 112 (485)
.+++.+.+ .+...+||-||-|.|..++.+.+.. .+++.+|+.++.++.|++.+.. .++++.+..|..++
T Consensus 63 hEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~ 142 (282)
T COG0421 63 HEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF 142 (282)
T ss_pred HHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH
Confidence 34444443 2334699999999999999999985 5899999999999999998653 26889999998764
Q ss_pred CCCCCCCCeeEEEhhhhhhccCh-H--HHHHHHHHHHhhcccCcEEEEE
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSD-K--EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
--.. ..+||+|++-..=. ... + --..+++.+++.|+|+|+++..
T Consensus 143 v~~~-~~~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 143 LRDC-EEKFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred HHhC-CCcCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 2112 23899999765433 221 0 0247999999999999999886
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.6e-05 Score=67.34 Aligned_cols=124 Identities=19% Similarity=0.210 Sum_probs=89.6
Q ss_pred CcCccChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEe
Q 043471 34 KASDLDKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCA 107 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~ 107 (485)
...+-....++.+...+.. ..|.++||+=+|+|.+++..+.+|+ .|+.||.+...+...+++... ..+...+..
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~ 100 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN 100 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence 3455566788889999876 6899999999999999999988865 899999999999998887542 357889999
Q ss_pred eccCCCCCCC--CCCeeEEEhhhhhhccChHHHHHHHHH--HHhhcccCcEEEEEe
Q 043471 108 DVTSPDLTFS--EDSVDMMFSNWLLMYLSDKEVEKLAER--MVKWLKVGGYIFFRE 159 (485)
Q Consensus 108 d~~~~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~--~~~~L~pgG~l~~~~ 159 (485)
|+... ++-. .++||+|+.-= .++..--+....+.. -..+|+|+|.+++..
T Consensus 101 da~~~-L~~~~~~~~FDlVflDP-Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 101 DALRA-LKQLGTREPFDLVFLDP-PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred cHHHH-HHhcCCCCcccEEEeCC-CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 98742 1112 23599999852 233222111233333 457899999999853
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.4e-06 Score=74.16 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=82.0
Q ss_pred HHHhhhcCcCcch---hhhhcCCCcCccChhhhHHHhccC-CC-CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHH
Q 043471 14 KNYWMEHSANLTV---EAMMLDSKASDLDKEERPEVLSLL-PP-YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSV 88 (485)
Q Consensus 14 ~~yw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~ 88 (485)
++||.+.+.-+.. ...|..+.+++.+++.....+... .. .....|+|.-||.|..+.-++.+++.|++||++|.-
T Consensus 49 ~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPik 128 (263)
T KOG2730|consen 49 FKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVK 128 (263)
T ss_pred HHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHH
Confidence 6788875543332 234555677777776555444322 11 145689999999999999999999999999999999
Q ss_pred HHHHHHHcCC---CCCeEEEEeeccCCC--CCCCCCCeeEEEhh
Q 043471 89 IKKNEEVNGH---FENVKFMCADVTSPD--LTFSEDSVDMMFSN 127 (485)
Q Consensus 89 ~~~a~~~~~~---~~~~~~~~~d~~~~~--~~~~~~~~D~v~~~ 127 (485)
+..|+.++.- .++|+|++||+.++- +.+....+|+|+.+
T Consensus 129 Ia~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 129 IACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred HHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 9999987643 248999999997631 33445557777765
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.1e-05 Score=68.38 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC-C-C--CCCCCC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP-D-L--TFSEDS 120 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~-~-~--~~~~~~ 120 (485)
....+++.||||.=||+.++..|.. +..|+++|++++..+.+.+... -...|+++++.+.+- + + ..+.++
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 4566789999999999998888876 7799999999999998876543 334899999987642 0 0 134689
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||.+|.- |.. .++..++.++.+++|+||.|++.
T Consensus 150 fDfaFvD----adK-~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 150 FDFAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eeEEEEc----cch-HHHHHHHHHHHhhcccccEEEEe
Confidence 9999874 233 23568999999999999998884
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.7e-05 Score=73.31 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-----CCCCeEEEEccCCCCC-CCCC-CccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-----LKCSVEFEVADCTKKT-YPEN-SFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-----~~~~i~~~~~d~~~~~-~~~~-~fD~i 353 (485)
+...+||=||.|.|..+..+.+.. ..+++.+|+++.+++.|++.+.. ...+++++..|....- -..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356799999999999999998764 35999999999999999987652 2358999999985531 1123 89999
Q ss_pred EEcccccccCC----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDTILHIQD----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.-..-...+. ..++++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 98432211111 3688999999999999998875
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.6e-05 Score=67.95 Aligned_cols=103 Identities=22% Similarity=0.356 Sum_probs=73.7
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCCh----HHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCC
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFID----SVIKKNEEVNGHFENVKFMCADVTSPD-LTFSED 119 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~----~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~ 119 (485)
+.++.++|.+||-+|..+|...-+++.- ...|+|++.|+ +.+..|++| +|+-.+.+|+..+. -..--+
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R----~NIiPIl~DAr~P~~Y~~lv~ 142 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR----PNIIPILEDARHPEKYRMLVE 142 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS----TTEEEEES-TTSGGGGTTTS-
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC----CceeeeeccCCChHHhhcccc
Confidence 3456788999999999999999999886 34899999999 556677777 68999999998642 112245
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+|+|++--+ + ++ ..+-++.++...||+||.+++.
T Consensus 143 ~VDvI~~DVa--Q-p~-Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVA--Q-PD-QARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-S--S-TT-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCC--C-hH-HHHHHHHHHHhhccCCcEEEEE
Confidence 8999998632 1 22 2567888888999999999985
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=73.01 Aligned_cols=104 Identities=18% Similarity=0.262 Sum_probs=81.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC--
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE-- 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~-- 347 (485)
..++.+++.+.+.++..|||||+|+|.++..|++. +.+++++|+++.+++..+++.. ...+++++.+|+.++..+.
T Consensus 17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh-hcccceeeecchhccccHHhh
Confidence 67788999998889999999999999999999988 4799999999999999999875 4458999999999886543
Q ss_pred -CCccEEEEcccccccCCHHHHHHHHHhcCCC
Q 043471 348 -NSFDVIYSRDTILHIQDKPALFKSFFKWLKP 378 (485)
Q Consensus 348 -~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lkp 378 (485)
.....|+++-.. ++ -..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy-~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPY-NI--SSPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETG-TG--HHHHHHHHHHHGGG
T ss_pred cCCceEEEEEecc-cc--hHHHHHHHhhcccc
Confidence 345667776543 22 34566666653333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.8e-05 Score=67.38 Aligned_cols=108 Identities=25% Similarity=0.296 Sum_probs=77.1
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCC--EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC---
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--- 344 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~--~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--- 344 (485)
.+.++.++.. ++++..|+|+|+..|.++..++++.+. .|+|+|+.|-- .-.++.++++|+...+
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----------~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----------PIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----------cCCCceEEeeeccCccHHH
Confidence 3455555553 578899999999999999999998743 59999996542 1236899999998753
Q ss_pred -----CCCCCccEEEEcccc--------cccC---CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 -----YPENSFDVIYSRDTI--------LHIQ---DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 -----~~~~~fD~i~~~~~~--------~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+...++|+|+|-.+- .|.. --..++.-+..+|+|||.+++-.+-
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 344568999984322 2221 1334566777899999999988653
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.1e-05 Score=67.18 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=78.3
Q ss_pred hhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-
Q 043471 41 EERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT- 115 (485)
Q Consensus 41 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~- 115 (485)
....++.+.... .++.+|+|+||-.|..+..+++. + ..|+|+|+-|- ...+++.++++|++..+..
T Consensus 31 ~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~~~V~~iq~d~~~~~~~~ 101 (205)
T COG0293 31 YKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPGVIFLQGDITDEDTLE 101 (205)
T ss_pred HHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccCCCceEEeeeccCccHHH
Confidence 344556666654 45789999999999999999987 3 34999999772 2235799999999875321
Q ss_pred -----CCCCCeeEEEhhhhh--------hccChHH-HHHHHHHHHhhcccCcEEEEEec
Q 043471 116 -----FSEDSVDMMFSNWLL--------MYLSDKE-VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 -----~~~~~~D~v~~~~~~--------~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+....+|+|+|-++. .|...-. ...++.-+..+|+|||.+++...
T Consensus 102 ~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 102 KLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred HHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 334558999986544 3332211 33556666779999999999755
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.1e-06 Score=80.56 Aligned_cols=67 Identities=30% Similarity=0.512 Sum_probs=51.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTS 111 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~ 111 (485)
..+++.++..++ +|||+-||+|.+++.||+...+|+|||+++++++.|++.+. ...|++|+.+++++
T Consensus 187 ~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 187 EQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 455666776655 89999999999999999999999999999999999988643 34689999987754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00018 Score=63.52 Aligned_cols=149 Identities=21% Similarity=0.227 Sum_probs=87.6
Q ss_pred HHHHHHHH---HcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC
Q 043471 270 ETTKEFVA---KLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~---~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~ 344 (485)
.....++. .+.+++|.+||-+|.++|....+++.-. ...|++++.|+...+..-..... ..|+--+..|+....
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-R~NIiPIl~DAr~P~ 135 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-RPNIIPILEDARHPE 135 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-STTEEEEES-TTSGG
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-CCceeeeeccCCChH
Confidence 44444544 3568899999999999999998888865 35999999999554443322211 237777888886521
Q ss_pred ---CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 345 ---YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 345 ---~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
.--+.+|+|++--+ +-....-++.++...||+||.+++.--...-......- .. -..-.+.|++
T Consensus 136 ~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~v----------f~~e~~~L~~ 202 (229)
T PF01269_consen 136 KYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-EV----------FAEEVKKLKE 202 (229)
T ss_dssp GGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-HH----------HHHHHHHHHC
T ss_pred HhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-HH----------HHHHHHHHHH
Confidence 11257999998532 22234445678889999999999883221111110000 00 1233467788
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
.||++++.-..
T Consensus 203 ~~~~~~e~i~L 213 (229)
T PF01269_consen 203 EGFKPLEQITL 213 (229)
T ss_dssp TTCEEEEEEE-
T ss_pred cCCChheEecc
Confidence 89999876543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-05 Score=66.41 Aligned_cols=110 Identities=16% Similarity=0.337 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC----
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK---- 343 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~---- 343 (485)
...+++.+ ..+++||||.=||..+..+|..+ +.+|+++|+++...+.+.+..+ +...+|++++++..+.
T Consensus 65 l~~li~~~---~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 65 LQMLIRLL---NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHHHHHHh---CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 34444444 35699999988888777777766 6799999999999999977554 6667899999887552
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..+.++||+++.-. .-.+....+.++.++||+||.+++-..
T Consensus 142 ~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~DNv 184 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVDNV 184 (237)
T ss_pred HhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEEecc
Confidence 13457899998732 113455788999999999999988753
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.9e-05 Score=64.86 Aligned_cols=145 Identities=21% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHH----------HHHHHHHHhcCCCCCeEEEEccCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSIN----------MISFALERAIGLKCSVEFEVADCT 341 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~----------~~~~a~~~~~~~~~~i~~~~~d~~ 341 (485)
+++...+++++..|+|+=.|.|.+++.++...+ ..|++.-+.+. +-..+++.. ..|++.+-.+..
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~---~aN~e~~~~~~~ 115 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV---YANVEVIGKPLV 115 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh---hhhhhhhCCccc
Confidence 455666899999999999999999999988763 26666543322 222222221 124444444444
Q ss_pred CCCCCCCCccEEEEccccc-------ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHH
Q 043471 342 KKTYPENSFDVIYSRDTIL-------HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKS 414 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (485)
.+. +.+..|+++.....| |-....++.+.+++.|||||.+++.+.....+........ ....+...
T Consensus 116 A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~------~~ri~~a~ 188 (238)
T COG4798 116 ALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTIT------LHRIDPAV 188 (238)
T ss_pred ccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhh------hcccChHH
Confidence 444 334556655532222 2335778899999999999999999877655444332221 12456788
Q ss_pred HHHHHHhCCCeEEE
Q 043471 415 YGQMLKDAGFVDII 428 (485)
Q Consensus 415 ~~~~l~~aGf~~~~ 428 (485)
+.+..+++||+...
T Consensus 189 V~a~veaaGFkl~a 202 (238)
T COG4798 189 VIAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHHhhcceeee
Confidence 99999999998654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.9e-05 Score=78.82 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=55.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcC---------CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-----CC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF---------DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-----PE 347 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-----~~ 347 (485)
...+|||.|||+|.++..++... ...++|+|+++..+..++.++...+ ..+.+.+.|.....+ ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34699999999999998887644 1579999999999999998876443 234445444332111 12
Q ss_pred CCccEEEEccccc
Q 043471 348 NSFDVIYSRDTIL 360 (485)
Q Consensus 348 ~~fD~i~~~~~~~ 360 (485)
+.||+|+++....
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 5799999986654
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.6e-05 Score=74.34 Aligned_cols=121 Identities=20% Similarity=0.234 Sum_probs=86.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDLTFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~ 117 (485)
......+.+.+|.+|||+.++.|.=+.++++. +..|+++|+++.-++..+++....+ ++.....|.....-..+
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~ 225 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP 225 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence 33445677889999999999999988888876 3458999999999998888765433 67788888765322222
Q ss_pred C-CCeeEEEh----h--hhhhc-------cChH-------HHHHHHHHHHhhcccCcEEEEEeccCCC
Q 043471 118 E-DSVDMMFS----N--WLLMY-------LSDK-------EVEKLAERMVKWLKVGGYIFFRESCFHQ 164 (485)
Q Consensus 118 ~-~~~D~v~~----~--~~~~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (485)
. ++||.|+. + +++.- .... -..++|..+.++|||||.|+-++.+...
T Consensus 226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 2 35999983 2 23311 1111 1347889999999999999998776543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=65.65 Aligned_cols=148 Identities=18% Similarity=0.251 Sum_probs=97.7
Q ss_pred HHHHHHHHHcCCC-CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCC---
Q 043471 270 ETTKEFVAKLDLK-PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKT--- 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~--- 344 (485)
..+...++.+.+. ++..+||||+.||.|+..+.++....|+|+|....++..--+. ..++ .+...|+..+.
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d~rV~~~E~tN~r~l~~~~ 140 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----DPRVIVLERTNVRYLTPED 140 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----CCcEEEEecCChhhCCHHH
Confidence 4566677777665 5779999999999999999998445999999999888764332 1233 33444554432
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcC------CCCCCHHHHHHH
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRG------YDLHDVKSYGQM 418 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 418 (485)
+. +..|+|+|--+|. ....+|..+..+++|+|.++..- ++.... -+......| ....-...+.+.
T Consensus 141 ~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEa---gr~~v~kkGvv~d~~~~~~v~~~i~~~ 211 (245)
T COG1189 141 FT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEA---GREQVGKKGVVRDPKLHAEVLSKIENF 211 (245)
T ss_pred cc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhh---hhhhcCcCceecCcchHHHHHHHHHHH
Confidence 22 3678999977765 45788999999999999887662 111100 001111111 111234678888
Q ss_pred HHhCCCeEEEEe
Q 043471 419 LKDAGFVDIIAE 430 (485)
Q Consensus 419 l~~aGf~~~~~~ 430 (485)
+++.||.+..+.
T Consensus 212 ~~~~g~~~~gl~ 223 (245)
T COG1189 212 AKELGFQVKGLI 223 (245)
T ss_pred HhhcCcEEeeeE
Confidence 899999987764
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=76.33 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=78.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---------cCcEEEEeCChHHHHHHHHHc--CC--CCCeEE
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---------AGHVIALDFIDSVIKKNEEVN--GH--FENVKF 104 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~giD~s~~~~~~a~~~~--~~--~~~~~~ 104 (485)
-+....+.+.+.+...++.+|+|-+||+|.+...+.+. ..+++|+|+++.++..|+.+. .. ..+..+
T Consensus 30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence 44566667777777778889999999999998877662 458999999999999887653 21 123568
Q ss_pred EEeeccCCCCCCCCCCeeEEEhhhhhhcc--C----------------h-HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYL--S----------------D-KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 105 ~~~d~~~~~~~~~~~~~D~v~~~~~~~~~--~----------------~-~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..+|....+.......||+|+++=.+.-. . . ..--.++..+.+.|++||.+.+--+
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 88887553221124789999987332111 0 0 0112588999999999999766433
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.5e-05 Score=65.19 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=83.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~~ 359 (485)
..|.+||.||-|-|.....+.++-...-+.|+..|..++..+........+|....+--++. .++++.||.|+--.--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 66889999999999988888877555778899999999998887655556777776654443 3568889999986554
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++-.|...+.+.+.|+|||+|.+-+.
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 180 ELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 67778888999999999999988665
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.2e-05 Score=68.35 Aligned_cols=70 Identities=29% Similarity=0.463 Sum_probs=52.0
Q ss_pred EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CCCCC-ccEEEEc
Q 043471 286 KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YPENS-FDVIYSR 356 (485)
Q Consensus 286 ~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~~~~-fD~i~~~ 356 (485)
.|+|+.||.|+.+..+|+. ..+|+++|+++..++.|+.++. +...+|+++++|..+.. +.... ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998 4599999999999999999987 44568999999987642 12122 8999985
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00017 Score=69.34 Aligned_cols=117 Identities=20% Similarity=0.194 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-C--------------------------------C-------EE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-D--------------------------------V-------HV 309 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~--------------------------------~-------~v 309 (485)
..+..++...+..++..++|.=||+|.+++..|... + + .+
T Consensus 178 tLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~ 257 (381)
T COG0116 178 TLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPII 257 (381)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceE
Confidence 355677777788888899999999999998776643 1 1 37
Q ss_pred EEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccccc-ccCC-------HHHHHHHHHhcCCCC
Q 043471 310 VGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL-HIQD-------KPALFKSFFKWLKPG 379 (485)
Q Consensus 310 ~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~-~~~~-------~~~~l~~~~~~Lkpg 379 (485)
+|+|+++.+++.|+.|+. +....|+|.++|+..++-+.+.+|+|+|+...- -+.+ ...+.+.+++.++--
T Consensus 258 ~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 258 YGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence 799999999999999875 666789999999999864447899999986542 1222 234456677777888
Q ss_pred cEEEEEe
Q 043471 380 GTVLISD 386 (485)
Q Consensus 380 G~l~i~~ 386 (485)
+.++|+.
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 8888873
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-05 Score=72.88 Aligned_cols=104 Identities=18% Similarity=0.272 Sum_probs=86.6
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC-
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ- 363 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~- 363 (485)
.++|.+|||.-.++..+.+..--.++-+|+|+..++....+.........+...|+..+.|++++||+|+.-+.+.++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 3999999999999888887744589999999999998877654444568899999999999999999999999998872
Q ss_pred C---------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 364 D---------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 364 ~---------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+ ....+.++.|+|+|||+++.....
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhccCCEEEEEEee
Confidence 1 234578999999999998777653
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.8e-05 Score=74.31 Aligned_cols=71 Identities=30% Similarity=0.370 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTK 342 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~ 342 (485)
.++..+++.+...++ +|||+-||.|.++..+++.. .+|+|+|+++.+++.|++++...+ .+++|..++..+
T Consensus 184 ~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~ 255 (352)
T PF05958_consen 184 KLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED 255 (352)
T ss_dssp HHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred HHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence 455666777776666 89999999999999999884 599999999999999999987433 479998877644
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.2e-05 Score=70.69 Aligned_cols=88 Identities=23% Similarity=0.369 Sum_probs=66.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
+.+|+++||+||++|+++..+.++ |.+|++||.++ |-. .+.. ..+|.....|......+.+++|.++|-.+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~-~~~V~h~~~d~fr~~p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD-TGQVEHLRADGFKFRPPRKNVDWLVCDMV-- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC-CCCEEEEeccCcccCCCCCCCCEEEEecc--
Confidence 468999999999999999999998 78999999654 211 1221 34788888887665323678999999654
Q ss_pred ccCCHHHHHHHHHhcCCCC
Q 043471 361 HIQDKPALFKSFFKWLKPG 379 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~Lkpg 379 (485)
..+..+.+-+.+.|..|
T Consensus 280 --e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 --EKPARVAELMAQWLVNG 296 (357)
T ss_pred --cCHHHHHHHHHHHHhcC
Confidence 35778888888888776
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=76.13 Aligned_cols=98 Identities=10% Similarity=0.071 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCCcchHHHHhh--c-CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--A-GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
+.+|||+.||+|..++.++.. | .+|+++|+++++++.++++... ..++.++++|+... +......||+|..-=
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~-l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANV-LRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHH-HHHhCCCCCEEEeCC-
Confidence 468999999999999999887 4 4899999999999999886532 23688999998764 111235799998752
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...+ ..++..+.+.+++||.++++.
T Consensus 123 -fGs~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 123 -FGTP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred -CCCc----HHHHHHHHHhcccCCEEEEEe
Confidence 2222 268999999999999999973
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00015 Score=64.65 Aligned_cols=115 Identities=15% Similarity=0.137 Sum_probs=80.4
Q ss_pred EEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 58 VLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 58 vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
|.||||-.|++..+|.++|. .|+++|+++.-++.|++.... ..+++...+|-... ++ +.+..|.|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~-~~e~~d~ivIAGM--- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LK-PGEDVDTIVIAGM--- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG----GGG---EEEEEEE---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cC-CCCCCCEEEEecC---
Confidence 68999999999999999975 899999999999999987543 35799999996542 21 2234898887664
Q ss_pred cChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 133 LSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+-....+.+.+....++....+++.... ....+++++.+.||...
T Consensus 76 -GG~lI~~ILe~~~~~~~~~~~lILqP~~-----------------~~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 76 -GGELIIEILEAGPEKLSSAKRLILQPNT-----------------HAYELRRWLYENGFEII 120 (205)
T ss_dssp --HHHHHHHHHHTGGGGTT--EEEEEESS------------------HHHHHHHHHHTTEEEE
T ss_pred -CHHHHHHHHHhhHHHhccCCeEEEeCCC-----------------ChHHHHHHHHHCCCEEE
Confidence 3333567888877777776678885442 56789999999998543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.9e-05 Score=69.59 Aligned_cols=142 Identities=16% Similarity=0.293 Sum_probs=85.4
Q ss_pred hccCCCCCC-CcEEEEcCCCCc--chHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCC--eEEEEeeccCCCCCCC-
Q 043471 47 LSLLPPYEG-KTVLEFGAGIGR--FTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFEN--VKFMCADVTSPDLTFS- 117 (485)
Q Consensus 47 ~~~~~~~~~-~~vLDiGcG~G~--~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~--~~~~~~d~~~~~~~~~- 117 (485)
.+.+....| ..+||||||-=. ..-..+++ .+.|+=+|..|-.+..++..+...++ ..++++|+.++.-.+.
T Consensus 60 Vr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~ 139 (267)
T PF04672_consen 60 VRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAH 139 (267)
T ss_dssp HHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCS
T ss_pred HHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcC
Confidence 344444434 479999999654 45666665 67899999999999999998776666 8999999987421111
Q ss_pred ---CCCee-----EEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc--------ccCCCCCCCCCh
Q 043471 118 ---EDSVD-----MMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS--------KRKHNPTHYREP 180 (485)
Q Consensus 118 ---~~~~D-----~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------~~~~~~~~~~~~ 180 (485)
.+-+| .|+...++||+++ +....++..+...|.||.+|+|+..+....... .....+.+.++.
T Consensus 140 p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 140 PEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp HHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-H
T ss_pred HHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCH
Confidence 12333 4667778999976 458899999999999999999998875432111 123556666777
Q ss_pred hHHHHHhh
Q 043471 181 RFYSKVFK 188 (485)
Q Consensus 181 ~~~~~~~~ 188 (485)
+.+..+|.
T Consensus 220 ~ei~~~f~ 227 (267)
T PF04672_consen 220 EEIAAFFD 227 (267)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcC
Confidence 77777777
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.8e-05 Score=71.32 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=65.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
.+|.++|||||++|..+-.|+++|..|+|||..+ |. ..+...++|..+..|..... .+.+.+|.|+|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~----~~L~~~~~V~h~~~d~fr~~--p~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA----QSLMDTGQVEHLRADGFKFR--PPRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC----HhhhCCCCEEEEeccCcccC--CCCCCCCEEEEecc---
Confidence 5789999999999999999999999999999655 22 22233378999999886642 22678999999754
Q ss_pred cChHHHHHHHHHHHhhcccC
Q 043471 133 LSDKEVEKLAERMVKWLKVG 152 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pg 152 (485)
.. ..++++-+.++|..|
T Consensus 280 -e~--P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 -EK--PARVAELMAQWLVNG 296 (357)
T ss_pred -cC--HHHHHHHHHHHHhcC
Confidence 22 336667777777665
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.2e-05 Score=72.40 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCEEEEECCCCChhHHHHhhcC-C-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-D-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~fD~i~~~~~~ 359 (485)
+.+|||+.||+|..+..++.+. | ..|+++|+++.+++.+++++...+ .++++.+.|+..... ....||+|..-. +
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 4589999999999999999874 3 489999999999999999986443 257888888866421 135799998855 3
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+..++..+.+.+++||.++++
T Consensus 124 ---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 ---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred ---CCcHHHHHHHHHhcccCCEEEEE
Confidence 35568999999999999999998
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.9e-05 Score=69.91 Aligned_cols=103 Identities=21% Similarity=0.278 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCCcch-HHHHhh---cCcEEEEeCChHHHHHHHHHcC-C---CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 54 EGKTVLEFGAGIGRFT-GELAKK---AGHVIALDFIDSVIKKNEEVNG-H---FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~-~~l~~~---~~~v~giD~s~~~~~~a~~~~~-~---~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
.+.+|+=||||.=-++ +.|+++ +..|+++|+++++++.+++... . ..+++|+.+|+.+ .+..-..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~--~~~dl~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLD--VTYDLKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGG--G-GG----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhc--cccccccCCEEE
Confidence 4569999999987765 566654 4679999999999999988654 1 2479999999976 333346899998
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...... +..++..+++.++.+.++||..++...
T Consensus 198 lAalVg-~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 198 LAALVG-MDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp E-TT-S-----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred Ehhhcc-cccchHHHHHHHHHhhCCCCcEEEEec
Confidence 764322 222336799999999999999999873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00058 Score=62.29 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI 327 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~ 327 (485)
...+..+.++... ..+|+.|||.=||+|..+....+. +.+++|+|+++...+.|.+++.
T Consensus 148 kP~~l~~~~i~~~-s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 148 KPVTSLQPLIESF-THPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CcHHHHHHHHHHh-CCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHH
Confidence 3346677777665 457889999999999888766654 8899999999999999998875
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0002 Score=66.44 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=67.1
Q ss_pred CCEEEEECCCCChhHH-HHhhcC--CCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 284 GQKVLDVGCGIGGGDF-YMADKF--DVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~-~l~~~~--~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
..+|+=||||.=.++. .+++.+ +..++++|+++.+++.+++... +++.+++|..+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 4599999999866554 455443 5689999999999999998765 566789999999987654446899999866
Q ss_pred cccc-cCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILH-IQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...- -.++.++|..+.+.++||..+++-.
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence 5432 2489999999999999999988873
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.5e-05 Score=63.02 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=96.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCChh-HHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCC--CCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGG-DFYMADKF-DVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTK--KTY 345 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~-~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~--~~~ 345 (485)
.+++.-..-.|.+|||+|.|--.+ +..+|... ...|..+|-++..++-.++..... ...+.++.-+... ...
T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201)
T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201)
T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH
Confidence 344444444578999999995444 44444443 468999999999988777654321 0112122111111 112
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
...+||.|+|...+..-.-.+.+++.|++.|+|.|..++..+- +-.+.+.+.+.....||.
T Consensus 100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPR-------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPR-------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCc-------------------ccchHHHHHHHHHhceeE
Confidence 3468999999998865556788899999999999997776322 123566777888889998
Q ss_pred EEEEeecchHHHHHHHHHHHHHH
Q 043471 426 DIIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
+...+. |-..+.....++.
T Consensus 161 v~l~en----yde~iwqrh~~Lk 179 (201)
T KOG3201|consen 161 VCLEEN----YDEAIWQRHGRLK 179 (201)
T ss_pred EEeccc----HhHHHHHHHHHHh
Confidence 765544 4444544444443
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=63.16 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=76.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+.++..-..-+|++|||+|+|+|..++.-++.|+ .|++.|+.|...+..+-+.+..+ .+.+...|+.. .+..|
T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-----~~~~~ 143 (218)
T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-----SPPAF 143 (218)
T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-----CCcce
Confidence 3445555566899999999999999999999876 79999999877766655443222 56777766543 46789
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
|+|+.+.+++.-+. ..+.+. +.+.|+..|..++
T Consensus 144 Dl~LagDlfy~~~~--a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 144 DLLLAGDLFYNHTE--ADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred eEEEeeceecCchH--HHHHHH-HHHHHHhCCCEEE
Confidence 99999987665444 446666 6666666666554
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00011 Score=69.44 Aligned_cols=112 Identities=29% Similarity=0.378 Sum_probs=84.8
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCcc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFD 351 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD 351 (485)
..+...++.+|||++++.|+=+..+++..+ ..+++.|+++.-+...++++..++ .++.....|..... .....||
T Consensus 79 ~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd 158 (283)
T PF01189_consen 79 LALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD 158 (283)
T ss_dssp HHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE
T ss_pred ccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc
Confidence 445678899999999999999999988763 699999999999999988887655 35666667766541 2234699
Q ss_pred EEEEc------ccccccCC----------------HHHHHHHHHhcC----CCCcEEEEEecc
Q 043471 352 VIYSR------DTILHIQD----------------KPALFKSFFKWL----KPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~------~~~~~~~~----------------~~~~l~~~~~~L----kpgG~l~i~~~~ 388 (485)
.|+.- +++..-++ ..++|+.+.+.+ ||||+++.++..
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 99982 22222222 456789999999 999999988654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.3e-05 Score=76.74 Aligned_cols=74 Identities=20% Similarity=0.298 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc----------CcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCC---CCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA----------GHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDL---TFSE 118 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~----------~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~---~~~~ 118 (485)
.+.+|||.|||+|.+...+++.. .+++|+|+++.++..++.++...+ .++....|...... .-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 35689999999999998887642 368999999999999988754433 34555555332111 0113
Q ss_pred CCeeEEEhh
Q 043471 119 DSVDMMFSN 127 (485)
Q Consensus 119 ~~~D~v~~~ 127 (485)
+.||+|++|
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 589999987
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.6e-05 Score=75.65 Aligned_cols=111 Identities=13% Similarity=0.087 Sum_probs=75.3
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCC---C
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSED---S 120 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~---~ 120 (485)
+-+.+....+..+||+-||||.+++.+++....|+||+++++++.-|+..+. ...|.+|+++-+++.--..... +
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 3356677788899999999999999999999999999999999999998653 3459999999666531111111 2
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
=++|....- ...+- -..+++.+.+.-+|--.++++.
T Consensus 455 ~~~v~iiDP-pR~Gl--h~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDP-PRKGL--HMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECC-Ccccc--cHHHHHHHHhccCccceEEEEc
Confidence 232322221 11111 2356666666666776777753
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.3e-05 Score=65.92 Aligned_cols=94 Identities=28% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCC-eeEEEhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDS-VDMMFSNWL 129 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~-~D~v~~~~~ 129 (485)
+.+++|||+|.|.-++.||= ...+|+-+|...+-+...+..... .+|++++++.++++.. ... ||+|+|-.+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~---~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQ---EKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccc---ccccCcEEEeehc
Confidence 57999999999999988773 355799999988776655554332 2589999999998541 123 999999754
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.. ...+..-+..++++||.++.
T Consensus 145 ----a~--L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 145 ----AS--LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----cc--hHHHHHHHHHhcccCCcchh
Confidence 22 45677778899999998654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0001 Score=62.51 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=76.3
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc--ccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD--TIL 360 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~--~~~ 360 (485)
+.+.|+|+|+|.++...++. .-+|++++.+|.-.+.|.+++. +. .+++++.+|+.+..| +..|+|+|-. +.-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHHh
Confidence 57999999999998877766 5599999999999999999964 32 489999999999887 5689999842 221
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
-......++..+...||-++.++=+
T Consensus 110 i~E~qVpV~n~vleFLr~d~tiiPq 134 (252)
T COG4076 110 IEEKQVPVINAVLEFLRYDPTIIPQ 134 (252)
T ss_pred hcccccHHHHHHHHHhhcCCccccH
Confidence 2234556788888889999987644
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00021 Score=60.15 Aligned_cols=99 Identities=21% Similarity=0.302 Sum_probs=67.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhh-----cCCCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCCCCCCCcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMAD-----KFDVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD 351 (485)
..+..+|+|+|||.|.++..++. ..+.+|+|+|.++..++.++++...+. .++.+..++..+.+ .....+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 101 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD 101 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence 35677999999999999999998 667899999999999999988776333 35555555554432 145677
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+++..++---+ -..+++...+ |+-.+++.
T Consensus 102 ~~vgLHaCG~L--s~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 102 ILVGLHACGDL--SDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEEeecccch--HHHHHHHHHH---cCCCEEEE
Confidence 77775443322 2344555444 65555544
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00036 Score=67.07 Aligned_cols=124 Identities=16% Similarity=0.085 Sum_probs=89.7
Q ss_pred CcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC------------------------------------
Q 043471 34 KASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG------------------------------------ 77 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------------------------ 77 (485)
...++.+.....++...+-.++..++|-=||+|.+.+..|-.+.
T Consensus 171 g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~ 250 (381)
T COG0116 171 GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARR 250 (381)
T ss_pred CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhh
Confidence 33445555666777777777778999999999999988876653
Q ss_pred -----cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh-ccChH-----HHHHHHH
Q 043471 78 -----HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM-YLSDK-----EVEKLAE 143 (485)
Q Consensus 78 -----~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~-~~~~~-----~~~~~l~ 143 (485)
.++|+|+++.+++.|+.+.. ..+.|+|.++|+..+.-++ ..+|+|+||=... -+.+. -+..+.+
T Consensus 251 ~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~ 328 (381)
T COG0116 251 GKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEALVAKLYREFGR 328 (381)
T ss_pred cCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChhhHHHHHHHHHH
Confidence 27799999999999998643 3347999999999854333 7899999984321 12222 2445666
Q ss_pred HHHhhcccCcEEEEEe
Q 043471 144 RMVKWLKVGGYIFFRE 159 (485)
Q Consensus 144 ~~~~~L~pgG~l~~~~ 159 (485)
.+++.++--+..+++.
T Consensus 329 ~lk~~~~~ws~~v~tt 344 (381)
T COG0116 329 TLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcCCceEEEEc
Confidence 7778888777777753
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0041 Score=53.89 Aligned_cols=148 Identities=21% Similarity=0.209 Sum_probs=95.4
Q ss_pred HHHHHHHHH---cCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-
Q 043471 270 ETTKEFVAK---LDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT- 344 (485)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~- 344 (485)
..+..++.. +++++|.+||=+|+.+|....+++.-.+ ..+++++.|+.+....-..+.. ..|+--+..|+....
T Consensus 60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-RPNIIPILEDARKPEK 138 (231)
T ss_pred HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-CCCceeeecccCCcHH
Confidence 344555544 4688999999999999999999988764 5899999999877665544433 236666777875521
Q ss_pred --CCCCCccEEEEcccccccCCHHH-HHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 345 --YPENSFDVIYSRDTILHIQDKPA-LFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 345 --~~~~~fD~i~~~~~~~~~~~~~~-~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
.--+..|+|+.-= ..++..+ +..++...||+||.+++.--...-......- .. -.+-.+.|++
T Consensus 139 Y~~~Ve~VDviy~DV---AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-~v----------f~~ev~kL~~ 204 (231)
T COG1889 139 YRHLVEKVDVIYQDV---AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-EV----------FKDEVEKLEE 204 (231)
T ss_pred hhhhcccccEEEEec---CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-HH----------HHHHHHHHHh
Confidence 1125588887732 1244444 4678899999999888874332221111110 00 1123456778
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
.||++++.-+.
T Consensus 205 ~~f~i~e~~~L 215 (231)
T COG1889 205 GGFEILEVVDL 215 (231)
T ss_pred cCceeeEEecc
Confidence 89999877554
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=61.06 Aligned_cols=89 Identities=20% Similarity=0.350 Sum_probs=61.0
Q ss_pred CCCCCcEEEEcCCCCcchHHHHh-----h-cCcEEEEeCChHHHHHHHHHcCCC-----CCeEEEEeeccCCCCCCCCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAK-----K-AGHVIALDFIDSVIKKNEEVNGHF-----ENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~-----~-~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+..+|+|+|||.|+++..|+. . +.+|+|||.++..++.++++.... .+.++..+++.... ....
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES---SSDP 99 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc---ccCC
Confidence 35677999999999999999998 4 679999999999998888764321 35677776665421 1456
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHh
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVK 147 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~ 147 (485)
.++++...+-.-+++ .+++...+
T Consensus 100 ~~~~vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 100 PDILVGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred CeEEEEeecccchHH----HHHHHHHH
Confidence 677776433223333 45555554
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.61 E-value=1.5e-05 Score=63.57 Aligned_cols=97 Identities=23% Similarity=0.264 Sum_probs=43.9
Q ss_pred EEEcCCCCcchHHHHhh---c--CcEEEEeCChH---HHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 59 LEFGAGIGRFTGELAKK---A--GHVIALDFIDS---VIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 59 LDiGcG~G~~~~~l~~~---~--~~v~giD~s~~---~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
||||+..|..+..+++. . .+++++|..+. .-+..++ .....+++++.++..+.--.++.+++|+|+.-+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-- 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC--
Confidence 69999999999888764 2 37999999994 3333333 222247999999986531123357999999765
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.|.. +.....++.+.+.|+|||.+++.+
T Consensus 78 ~H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 78 DHSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCCH-HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2322 225678999999999999999875
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.60 E-value=3.5e-05 Score=63.15 Aligned_cols=55 Identities=22% Similarity=0.482 Sum_probs=44.0
Q ss_pred EEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 334 ~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+++-.....+|.+++.|+|++.++++|+. .-..++++++|.|||||++-++.+.
T Consensus 32 dlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185)
T COG4627 32 DLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185)
T ss_pred chhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC
Confidence 333333344578899999999999999994 5667899999999999999998543
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00032 Score=61.02 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=85.3
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~ 115 (485)
|.........+.+. .+|.+||.||.|-|...-.+.++. ..=+-|+..|+.++..+.---. ..||-...+-+++.--.
T Consensus 86 WEtpiMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~ 164 (271)
T KOG1709|consen 86 WETPIMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNT 164 (271)
T ss_pred hhhHHHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcc
Confidence 33344444444444 678899999999999888887763 4567799999999888875322 24888888888775334
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
.+++.||=|+---.-.+-.+ ...+.+.+.|+|||+|.+-.
T Consensus 165 L~d~~FDGI~yDTy~e~yEd--l~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 165 LPDKHFDGIYYDTYSELYED--LRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred ccccCcceeEeechhhHHHH--HHHHHHHHhhhcCCCceEEE
Confidence 67899999885433344444 66888999999999998765
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=66.45 Aligned_cols=90 Identities=22% Similarity=0.268 Sum_probs=75.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---- 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---- 344 (485)
-++.++++.+...++..++|.-||.|+.+..+++.+ +.+|+|+|.++.+++.+++++.....++.++++++.++.
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 456788899988899999999999999999999876 479999999999999999998776678999999887652
Q ss_pred -CCCCCccEEEEcccc
Q 043471 345 -YPENSFDVIYSRDTI 359 (485)
Q Consensus 345 -~~~~~fD~i~~~~~~ 359 (485)
....++|.|+....+
T Consensus 87 ~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 87 ELLVTKIDGILVDLGV 102 (305)
T ss_pred hcCCCcccEEEEeccC
Confidence 233579999886544
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00055 Score=63.10 Aligned_cols=148 Identities=15% Similarity=0.108 Sum_probs=92.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHh--cCCC-------------------------------
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLK------------------------------- 330 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~------------------------------- 330 (485)
..+||--|||.|+++..|+.. |.++.|=+.|--|+=...=.+ ....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 458999999999999999977 778888888877753321111 0000
Q ss_pred --------CCeEEEEccCCCC---CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH
Q 043471 331 --------CSVEFEVADCTKK---TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399 (485)
Q Consensus 331 --------~~i~~~~~d~~~~---~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 399 (485)
.....-.+|+.+. +-..+.||+|+.++.+-...+.-+.+..|..+|||||..+=..+...........
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~- 308 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGV- 308 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCC-
Confidence 0111112333322 1112469999998777666789999999999999999987553322111110000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHH
Q 043471 400 EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436 (485)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~ 436 (485)
.+...--.+.+++..+++.-||+++..+.....|
T Consensus 309 ---~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 309 ---ENEMSIELSLEDLKRVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred ---cccccccccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence 0001123578999999999999998776544444
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00094 Score=62.81 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc--C------CCCCeEEEEccCCCCC-CCCCCcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI--G------LKCSVEFEVADCTKKT-YPENSFD 351 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~--~------~~~~i~~~~~d~~~~~-~~~~~fD 351 (485)
+.-.+||-+|.|.|-.++.+.+.-+ .+++-+|.+|.|++.++.+.. . ...+++++..|+.+.- -..+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 3446899999999999999987653 499999999999999984432 1 2357888888886642 2245899
Q ss_pred EEEEcc------cccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIYSRD------TILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~~~~------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+|+.-. ++--+ --.++..-+.|.|+++|.++++-
T Consensus 368 ~vIVDl~DP~tps~~rl-YS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 368 VVIVDLPDPSTPSIGRL-YSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEEEeCCCCCCcchhhh-hhHHHHHHHHHhcCcCceEEEec
Confidence 998732 11110 13467788899999999999983
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00049 Score=62.22 Aligned_cols=107 Identities=24% Similarity=0.319 Sum_probs=82.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
.....++..+...+|.+|||-|.|+|.++.++++.- .+++..|+-+...+.|.+.... .+++++..-|+...-.
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 345678899999999999999999999999999983 5899999988888888875543 2489999999988444
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 154 (485)
...+..+|.|+.-..-.| .++-.++++||.+|.
T Consensus 172 ~~ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 172 LIKSLKADAVFLDLPAPW-------EAIPHAAKILKDEGG 204 (314)
T ss_pred cccccccceEEEcCCChh-------hhhhhhHHHhhhcCc
Confidence 444678999987643222 344456667887774
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=62.20 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=75.4
Q ss_pred HHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCC-eEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFEN-VKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~-~~~~~~d~~~~~~~~~~~~ 120 (485)
...++.+.. .++.++||||+.||.++..+.++|+ +|+|+|..-..+..--+.. ++ +.+...|+..+...--.+.
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d---~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND---PRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC---CcEEEEecCChhhCCHHHcccC
Confidence 456666664 4688999999999999999999976 8999999987765433321 33 4555556655321111236
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.|+++|--+ +++ ...++..+..+++|+|.++..
T Consensus 145 ~d~~v~DvS--FIS---L~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 145 PDLIVIDVS--FIS---LKLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCeEEEEee--hhh---HHHHHHHHHHhcCCCceEEEE
Confidence 788887643 333 457889999999999988774
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00027 Score=59.67 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=45.9
Q ss_pred cEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccC
Q 043471 57 TVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTS 111 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~ 111 (485)
.+||||||.|..+..+++.+. +|+++|+++.+.+.+++.... .++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999998865 699999999999988886532 2468888888765
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.47 E-value=2.3e-05 Score=62.50 Aligned_cols=96 Identities=20% Similarity=0.341 Sum_probs=43.4
Q ss_pred EEECCCCChhHHHHhhcC--C--CEEEEEeCCHH---HHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 288 LDVGCGIGGGDFYMADKF--D--VHVVGIDLSIN---MISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 288 LDiGcG~G~~~~~l~~~~--~--~~v~g~D~s~~---~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
||||+..|..+..+++.. + .+++++|..+. .-+..++ .++..+++++.++..+. .++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~--~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK--AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh--cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 699999999998888754 2 37999999984 3333332 23445799999988653 223578999998652
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|..+.....++.+.+.|+|||.+++.+
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222345667888999999999999875
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=57.07 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=91.5
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cC--cEEEEeCChH----------HHHHHHHHcCCCCCeEEEEeeccC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AG--HVIALDFIDS----------VIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~--~v~giD~s~~----------~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
++|...+.++|.+|+|+=.|.|+++..|+.. |. .|++.=..+. +-..+++. ...|+..+-.....
T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~--~~aN~e~~~~~~~A 116 (238)
T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREP--VYANVEVIGKPLVA 116 (238)
T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhh--hhhhhhhhCCcccc
Confidence 6777788899999999999999999999876 32 6766643332 11122211 11244444444444
Q ss_pred CCCCCCCCCeeEEEhhhhhh-----ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLM-----YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
+. +.+..|+++.+...| .+......++..++++.|||||.+.+.+.....++... .....++.+.....+.
T Consensus 117 --~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~-dt~~~~ri~~a~V~a~ 192 (238)
T COG4798 117 --LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS-DTITLHRIDPAVVIAE 192 (238)
T ss_pred --cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh-hhhhhcccChHHHHHH
Confidence 22 446677776543322 12233467899999999999999999776555443333 2333444567778888
Q ss_pred hhhcceec
Q 043471 187 FKECQIQD 194 (485)
Q Consensus 187 ~~~~~~~~ 194 (485)
.+.+||..
T Consensus 193 veaaGFkl 200 (238)
T COG4798 193 VEAAGFKL 200 (238)
T ss_pred HHhhccee
Confidence 88889854
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=57.01 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=76.0
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHH----HHHHHcCCCCCeEEEEeeccCCC-CCCCCCCe
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIK----KNEEVNGHFENVKFMCADVTSPD-LTFSEDSV 121 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~----~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~ 121 (485)
.++..+|.+||=+|+-+|...-+++.- + ..|+|+++|+...+ .|++| +|+-.+.+|+..+. -.+--+.+
T Consensus 71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R----~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR----PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC----CCceeeecccCCcHHhhhhcccc
Confidence 346788999999999999999999886 3 57999999986654 55554 68999999998652 11224679
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+|+.--+ .+...+-+..++..-|++||++++.
T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEE
Confidence 99986421 1222456677788999999987774
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00073 Score=61.32 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred HHHHHHcCCCCCC--EEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC------C----CCeEEEEccC
Q 043471 273 KEFVAKLDLKPGQ--KVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL------K----CSVEFEVADC 340 (485)
Q Consensus 273 ~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------~----~~i~~~~~d~ 340 (485)
+.+++.++++++. +|||.-+|+|..+..++.+ |++|+++|-++.+....+..+... . .+++++.+|.
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH
Confidence 4677888888887 9999999999999999988 889999999999988887776532 1 3677888887
Q ss_pred CCCC-CCCCCccEEEEccccccc
Q 043471 341 TKKT-YPENSFDVIYSRDTILHI 362 (485)
Q Consensus 341 ~~~~-~~~~~fD~i~~~~~~~~~ 362 (485)
.+.- -...+||+|+.-..+.|-
T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_pred HHHHhhCCCCCcEEEECCCCCCC
Confidence 5531 112479999998777663
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00019 Score=62.61 Aligned_cols=73 Identities=22% Similarity=0.359 Sum_probs=58.9
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC----CCCCCCccEEEEcc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK----TYPENSFDVIYSRD 357 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~----~~~~~~fD~i~~~~ 357 (485)
...|+|.-||.|+.+..++.+ +..|++||++|.-+..|+.++. |...+|+|+++|..++ .+....+|+|+.+.
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sp 173 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLSP 173 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecCC
Confidence 458999999999999999988 7899999999999999999987 6668999999998765 22223355665544
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00013 Score=68.95 Aligned_cols=117 Identities=24% Similarity=0.267 Sum_probs=84.2
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCe
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+.+.++.+|||+++|.|.=+..+++. ...|++.|+++..+...+.+.... .++.....|............|
T Consensus 78 ~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 78 ALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKF 157 (283)
T ss_dssp HHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTE
T ss_pred cccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccccc
Confidence 34467788999999999999999888886 358999999999998887764433 3677777787763211233469
Q ss_pred eEEEh----hh--hhhccChH--------------HHHHHHHHHHhhc----ccCcEEEEEeccCC
Q 043471 122 DMMFS----NW--LLMYLSDK--------------EVEKLAERMVKWL----KVGGYIFFRESCFH 163 (485)
Q Consensus 122 D~v~~----~~--~~~~~~~~--------------~~~~~l~~~~~~L----~pgG~l~~~~~~~~ 163 (485)
|.|+. ++ ++..-++. ...+.|+.+.+.+ ||||+++-++.+..
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence 99984 32 23222221 1237889999999 99999999877654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0034 Score=55.36 Aligned_cols=123 Identities=13% Similarity=0.077 Sum_probs=89.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+.+.++.||||--|.+..++.+.. ...+++.|+++..++.|.+++. ++..+++...+|....--++..+|+|+..++
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM 94 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence 445569999999999999999875 3489999999999999999887 4456788888888543233457999888654
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
=- .-...+|++-...|+.=-+++++ +-....++++.|.+.+|.++.
T Consensus 95 GG--~lI~~ILee~~~~l~~~~rlILQ----------------------Pn~~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 GG--TLIREILEEGKEKLKGVERLILQ----------------------PNIHTYELREWLSANSYEIKA 140 (226)
T ss_pred cH--HHHHHHHHHhhhhhcCcceEEEC----------------------CCCCHHHHHHHHHhCCceeee
Confidence 22 23556777777777655566665 112345677777777777654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0088 Score=58.40 Aligned_cols=147 Identities=15% Similarity=0.246 Sum_probs=82.3
Q ss_pred CCEEEEECCCCChhHHHHhhcC----------------CCEEEEEeCCHHHHHHHHHHhcC--------------CCCCe
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF----------------DVHVVGIDLSINMISFALERAIG--------------LKCSV 333 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~g~D~s~~~~~~a~~~~~~--------------~~~~i 333 (485)
..+|+|+|||+|..+..+.... ..+|..-|...+-....=..+.. .+.+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5689999999998776553311 14566666543222221111110 00011
Q ss_pred EEE---EccCCCCCCCCCCccEEEEcccccccCC--------------------------------------HHHHHHHH
Q 043471 334 EFE---VADCTKKTYPENSFDVIYSRDTILHIQD--------------------------------------KPALFKSF 372 (485)
Q Consensus 334 ~~~---~~d~~~~~~~~~~fD~i~~~~~~~~~~~--------------------------------------~~~~l~~~ 372 (485)
-|+ -+.+..--||.++.+++++..++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 2344444588999999999999999842 11223333
Q ss_pred HhcCCCCcEEEEEecccCCCCCC------hh----HH----HHHHhc------------CCCCCCHHHHHHHHHhCC-Ce
Q 043471 373 FKWLKPGGTVLISDYCKSFGTPS------VE----FS----EYIKQR------------GYDLHDVKSYGQMLKDAG-FV 425 (485)
Q Consensus 373 ~~~LkpgG~l~i~~~~~~~~~~~------~~----~~----~~~~~~------------~~~~~~~~~~~~~l~~aG-f~ 425 (485)
.+-|+|||+++++..+.....+. .. +. +....+ ....++.+++++..++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 45689999999997665421110 00 11 111110 124578999999999866 55
Q ss_pred EEEEe
Q 043471 426 DIIAE 430 (485)
Q Consensus 426 ~~~~~ 430 (485)
+..++
T Consensus 304 I~~le 308 (386)
T PLN02668 304 IDKLE 308 (386)
T ss_pred eeeeE
Confidence 54444
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00072 Score=61.10 Aligned_cols=92 Identities=18% Similarity=0.314 Sum_probs=66.4
Q ss_pred HHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 347 (485)
.++.+.+.+ .+++..+|+|||||.-.++....... +..++|+|++..+++..+..+.-++.+.++...|+...+ +.
T Consensus 91 ~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~-~~ 169 (251)
T PF07091_consen 91 NLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP-PK 169 (251)
T ss_dssp GHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH-TT
T ss_pred hHHHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC-CC
Confidence 344444444 24456799999999999888777654 679999999999999999887777778888888988775 35
Q ss_pred CCccEEEEcccccccC
Q 043471 348 NSFDVIYSRDTILHIQ 363 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~ 363 (485)
.+.|+.+..=+++.+.
T Consensus 170 ~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 170 EPADLALLLKTLPCLE 185 (251)
T ss_dssp SEESEEEEET-HHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 7899999988877663
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=55.21 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=66.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEc-cCCCC--------CCCCCC
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVA-DCTKK--------TYPENS 349 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~-d~~~~--------~~~~~~ 349 (485)
++|+.+|||+||..|.++.-..++. +..|.|||+-.-. . ...++++.+ |+.+. .+|+.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---------p-~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---------P-PEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---------C-CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 6789999999999999999888876 4589999983321 1 113444444 55442 246778
Q ss_pred ccEEEEccccc----ccCCHHHHHHH-------HHhcCCCCcEEEEEecccCC
Q 043471 350 FDVIYSRDTIL----HIQDKPALFKS-------FFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 350 fD~i~~~~~~~----~~~~~~~~l~~-------~~~~LkpgG~l~i~~~~~~~ 391 (485)
.|+|++-..-. -+.|....+.- ....++|+|.+++-.|...+
T Consensus 137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 99999853221 11244443333 34567899999998766543
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=61.02 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCEEEEECCCCChhH-HHHhhcCCCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEEEccCCC-----CCCCCCCccEEE
Q 043471 284 GQKVLDVGCGIGGGD-FYMADKFDVHVVGIDLSINMISFALERAI---GLKCSVEFEVADCTK-----KTYPENSFDVIY 354 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~-~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~~~d~~~-----~~~~~~~fD~i~ 354 (485)
..++||||||...+- ..-++.++++++|+|+++..++.|++++. .+..+|+++...-.. +..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 468999999988653 33344458999999999999999999986 345678887653222 112346899999
Q ss_pred Eccccccc
Q 043471 355 SRDTILHI 362 (485)
Q Consensus 355 ~~~~~~~~ 362 (485)
|+..|+.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 99988754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0037 Score=59.71 Aligned_cols=101 Identities=23% Similarity=0.306 Sum_probs=73.5
Q ss_pred HHHcCCCCCCEEEEECCC-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC--CCCccE
Q 043471 276 VAKLDLKPGQKVLDVGCG-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP--ENSFDV 352 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~--~~~fD~ 352 (485)
++....+||.+|+=+|+| .|..+..+++..+++|+++|.|++-.+.|++.-.. .++... .....+ .+.||+
T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~-~~~~~~~~~~~~d~ 232 (339)
T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-----HVINSS-DSDALEAVKEIADA 232 (339)
T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-----EEEEcC-CchhhHHhHhhCcE
Confidence 455678999999999986 45678888987899999999999999999876331 223322 111111 134999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|+..-. ...+....+.||+||++++.-...
T Consensus 233 ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 233 IIDTVG-------PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred EEECCC-------hhhHHHHHHHHhcCCEEEEECCCC
Confidence 988643 455788889999999999986553
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00045 Score=68.17 Aligned_cols=109 Identities=19% Similarity=0.183 Sum_probs=74.6
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC---CCC--CC
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT---YPE--NS 349 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~---~~~--~~ 349 (485)
-+.++++++..+||+.||||.++..+++.. .+|+|+++++..++.|+.++...+ .|.+|+++-.+++- +.. .+
T Consensus 376 ~e~~~l~~~k~llDv~CGTG~iglala~~~-~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~ 454 (534)
T KOG2187|consen 376 GEWAGLPADKTLLDVCCGTGTIGLALARGV-KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTPCCDS 454 (534)
T ss_pred HHHhCCCCCcEEEEEeecCCceehhhhccc-cceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhcccCCCC
Confidence 345578888999999999999999999885 599999999999999999987544 58999999555531 100 12
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
=++|.....-. ..=...+++.+.+.-+|--.++++.
T Consensus 455 ~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSC 490 (534)
T KOG2187|consen 455 ETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSC 490 (534)
T ss_pred CceEEEECCCc-ccccHHHHHHHHhccCccceEEEEc
Confidence 23232221110 0113456677766666777777764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 485 | ||||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 2e-46 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 6e-46 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 8e-46 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 3e-45 | ||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 2e-16 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 5e-11 | ||
| 3bkw_A | 243 | Crystal Structure Of S-Adenosylmethionine Dependent | 4e-10 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 3e-08 | ||
| 2o57_A | 297 | Crystal Structure Of A Putative Sarcosine Dimethylg | 1e-07 | ||
| 1xtp_A | 254 | Structural Analysis Of Leishmania Major Lmaj004091a | 2e-07 | ||
| 3d2l_A | 243 | Crystal Structure Of Sam-Dependent Methyltransferas | 8e-07 | ||
| 3f4k_A | 257 | Crystal Structure Of A Probable Methyltransferase F | 2e-06 | ||
| 3svz_A | 263 | Crystal Structure Of Apo Bt_2972, A Methyltransfera | 2e-06 | ||
| 2fk7_A | 318 | Crystal Structure Of Hma (Mmaa4) From Mycobacterium | 1e-05 | ||
| 1kp9_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 3e-05 | ||
| 1kpg_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 4e-05 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 5e-05 | ||
| 1wzn_A | 252 | Crystal Structure Of The Sam-Dependent Methyltransf | 6e-05 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 8e-05 | ||
| 1l1e_A | 287 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 9e-05 | ||
| 3t7r_A | 268 | Crystal Structure Of Apo Bvu_3255, A Methyltransfer | 1e-04 | ||
| 3e7p_A | 270 | Crystal Structure Of Of Putative Methyltransferase | 1e-04 | ||
| 1kpi_A | 302 | Crystal Structure Of Mycolic Acid Cyclopropane Synt | 4e-04 | ||
| 1tpy_A | 287 | Structure Of The Cyclopropane Synthase Mmaa2 From M | 7e-04 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 8e-04 |
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297 | Back alignment and structure |
|
| >pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A Sam-dependent Methyltransferase Of The Duf858/pfam05891 Family Length = 254 | Back alignment and structure |
|
| >pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase (Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90 A Resolution Length = 243 | Back alignment and structure |
|
| >pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257 | Back alignment and structure |
|
| >pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263 | Back alignment and structure |
|
| >pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium Tuberculosis, Apo- Form Length = 318 | Back alignment and structure |
|
| >pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1, Apo-Form Length = 287 | Back alignment and structure |
|
| >pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa1 Complexed With Sah And Ctab Length = 287 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Pcaa Complexed With S-Adenosyl-L-Homocysteine Length = 287 | Back alignment and structure |
|
| >pdb|3T7R|A Chain A, Crystal Structure Of Apo Bvu_3255, A Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 268 | Back alignment and structure |
|
| >pdb|3E7P|A Chain A, Crystal Structure Of Of Putative Methyltransferase From Bacteroides Vulgatus Atcc 8482 Length = 270 | Back alignment and structure |
|
| >pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa2 Complexed With Sah And Dddmab Length = 302 | Back alignment and structure |
|
| >pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From Mycobacterium Tuberculosis Length = 287 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 252 bits (645), Expect = 3e-81
Identities = 91/231 (39%), Positives = 144/231 (62%), Gaps = 4/231 (1%)
Query: 233 QNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGC 292
+N + FL+N QY G+ YE +FG ++S+GG+E TK+ ++ ++L KVLD+G
Sbjct: 5 ENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGS 64
Query: 293 GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352
G+GGG Y+ +K+ H GID+ N+++ A ER + FE D K +PEN+FD+
Sbjct: 65 GLGGGCMYINEKYGAHTHGIDICSNIVNMANERV-SGNNKIIFEANDILTKEFPENNFDL 123
Query: 353 IYSRDTI--LHIQDKPALFKSFFKWLKPGGTVLISDYCKS-FGTPSVEFSEYIKQRGYDL 409
IYSRD I L +++K LF+ +KWLKP GT+LI+DYC + EF EY+KQR Y L
Sbjct: 124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTL 183
Query: 410 HDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
V+ Y +L F +++++D ++ + Q+L+ E + ++K+ F+K FSE
Sbjct: 184 ITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSE 234
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 8e-11
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVK 103
++LS + E VL+ G+G+G + +K G H +D +++ E +
Sbjct: 46 KILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKII 105
Query: 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163
F D+ F E++ D+++S ++ LS + KL ++ KWLK G + + C
Sbjct: 106 FEANDIL--TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163
Query: 164 QSGD 167
+ +
Sbjct: 164 EKEN 167
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 2e-70
Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 19/226 (8%)
Query: 254 RYERVFG----VGFVSTGGIE---------TTKEFVAKLDLKPGQKVLDVGCGIGGGDFY 300
+ R++G G+ G + T E +A LD++ G +VLDVGCGIG
Sbjct: 19 PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVR 78
Query: 301 MADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
+A DV V GI +S ++ A RA GL V F AD + + SFD +++ ++
Sbjct: 79 LATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALES 138
Query: 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV--EFSEYIKQRGY--DLHDVKS 414
+ H+ D+ + + L+PGGTV I+D+ E + + G L +
Sbjct: 139 LHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDE 198
Query: 415 YGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSE 460
Y ++ A V D + Q L + +A E +
Sbjct: 199 YESDVRQAELVVTSTVDISAQARPSLVKTAEAFENARSQVEPFMGA 244
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 31/140 (22%), Positives = 54/140 (38%), Gaps = 8/140 (5%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN---GHFE 100
E+++LL G VL+ G GIG+ LA V + + + G
Sbjct: 52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLAN 111
Query: 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160
V F AD DL F + S D +++ L ++ D+ + M + L+ GG + +
Sbjct: 112 RVTFSYADAM--DLPFEDASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADF 167
Query: 161 CFHQSGDSKRKHNPTHYREP 180
+ +K +R
Sbjct: 168 VLLAPVEGAKKEAVDAFRAG 187
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 3e-70
Identities = 55/265 (20%), Positives = 103/265 (38%), Gaps = 19/265 (7%)
Query: 214 VKNKKNQNQICWIWQKVRSQ-----NDRGFQQFLDNVQYKLNG----ILRYERVFGVGFV 264
V+N Q+Q + V+ +D +F +V G + Y+ +
Sbjct: 3 VENSNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHV---WGGEDIHVGLYKEPVDQDEI 59
Query: 265 STGGIETTKEFVAKLD----LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMIS 320
+ T + ++L L+ K LD+G G GG ++ KF V + ++++
Sbjct: 60 REASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNK 119
Query: 321 FALERA--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKP 378
E GL ++ + + +NS+D I+S+D LH DK +F+ + LKP
Sbjct: 120 RNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKP 179
Query: 379 GGTVLISDYCKSFGTPSVEFSEYIKQ-RGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
G + I+D K G + + + +D+ + Y + K+ G V + R + V
Sbjct: 180 RGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV 239
Query: 438 QVLQRELDAIEKDKDAFIKDFSEVF 462
+ + K S F
Sbjct: 240 HHYSKVKAELIKRSSEIASFCSPEF 264
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 8/120 (6%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN---GHFENVKFMCADV 109
L+ GAG G L +K G + L+ K+NEE N G +N+
Sbjct: 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF 141
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK 169
++ ++S D ++S ++ DK K+ + + LK G + + D
Sbjct: 142 L--EIPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS 197
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 3e-53
Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 11/204 (5%)
Query: 267 GGIETTKEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T++ V+ + +L K+ D+GCG GG ++AD + GIDL + I E
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNEN 88
Query: 326 AI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A+ V+ + D+I+S I +I + + + K+LK GG +
Sbjct: 89 AVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGM-NEWSKYLKKGGFIA 147
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQ-----FVQ 438
+S+ E ++ ++ + + ++ AG+ E +
Sbjct: 148 VSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFILPENCWTEHYFA 207
Query: 439 VLQRELDAIEKD--KDAFIKDFSE 460
+ K+ + DF +
Sbjct: 208 PQDEVRETFMKEHAGNKTAMDFMK 231
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 2e-15
Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 11/165 (6%)
Query: 35 ASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNE 93
S + ++ L + + G G G T LA + +D I+
Sbjct: 29 GSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFN 86
Query: 94 EVN---GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLK 150
E + VK + + +L F + +D+++S + + + + E K+LK
Sbjct: 87 ENAVKANCADRVKGITGSMD--NLPFQNEELDLIWSEGAIYNIGFERG--MNE-WSKYLK 141
Query: 151 VGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195
GG+I E+ + S + P +++ A
Sbjct: 142 KGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERA 186
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 158 bits (400), Expect = 4e-45
Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 11/204 (5%)
Query: 267 GGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER 325
G E T + ++ +D L + D+GCG GG +A V G+D I
Sbjct: 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN 88
Query: 326 A--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
A GL+ V V + D+I+S I +I + L + K+LK GG +
Sbjct: 89 ARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFERGL-NEWRKYLKKGGYLA 147
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQ-----FVQ 438
+S+ E +++ ++ + + + AG++ + E +
Sbjct: 148 VSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFILPENCWTDHYFT 207
Query: 439 VLQRELDAIEKD--KDAFIKDFSE 460
+ ++FS
Sbjct: 208 PKVAAQKIFLTKYAGNKIAEEFSM 231
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 6e-15
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 10/128 (7%)
Query: 39 DKEERPEVLSLLPPY-EGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEE-- 94
E + LS + E + + G G G T LA G V LDF+ I
Sbjct: 30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNA 89
Query: 95 -VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
+G V + + DL F + +D+++S + + + L E K+LK GG
Sbjct: 90 RQSGLQNRVTGIVGSMD--DLPFRNEELDLIWSEGAIYNIGFERG--LNE-WRKYLKKGG 144
Query: 154 YIFFRESC 161
Y+ E
Sbjct: 145 YLAVSECS 152
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 4e-41
Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 14 KNYWMEHSANLTVEAMMLD-SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGEL 72
YW A TV ++ D+D E ++ LP + L+ GAGIGR T L
Sbjct: 54 LEYWRTVPA--TVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNL 111
Query: 73 AKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131
K L+ + ++++ + KF+ A + T ++ D++ W +
Sbjct: 112 LTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASME--TATLPPNTYDLIVIQWTAI 169
Query: 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKEC 190
YL+D + K + + L GYIFF+E+C K + + R Y ++F E
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 41/204 (20%), Positives = 79/204 (38%), Gaps = 14/204 (6%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGD 298
++ V ++G+L G+ V IE ++ F+A L + LD G GIG
Sbjct: 54 LEYWRTVPATVSGVLG-----GMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108
Query: 299 FYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358
+ K ++ +M+ A G+ +F +A T P N++D+I + T
Sbjct: 109 KNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV-GKFILASMETATLPPNTYDLIVIQWT 167
Query: 359 ILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416
+++ D FK + L P G + + C + K+ Y
Sbjct: 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF-----LVDKEDSSLTRSDIHYK 222
Query: 417 QMLKDAGFVDIIAEDRTEQFVQVL 440
++ ++G ++ E E++ L
Sbjct: 223 RLFNESGV-RVVKEAFQEEWPTDL 245
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 1e-40
Identities = 52/198 (26%), Positives = 93/198 (46%), Gaps = 15/198 (7%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
IET + + K +K KVLD+ CG+GG F + + VVG+D+S +MI A E A
Sbjct: 25 IETLEPLLMK-YMKKRGKVLDLACGVGGFSFLLE-DYGFEVVGVDISEDMIRKAREYAKS 82
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386
+ +VEF V D K ++ + +FD + D+I+H + + +FK + LKP G ++
Sbjct: 83 RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 142
Query: 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQ----R 442
P ++ S + Q+ + +++ D ++ E ++EQ ++
Sbjct: 143 TDLRELLPRLKESLVVGQKYW-------ISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG 195
Query: 443 ELDAIEKDKDAFIKDFSE 460
+ K F K+ E
Sbjct: 196 KTGVELLAKLYFTKEAEE 213
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 7e-15
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNGHFENVKFMCADVTSP 112
+ VL+ G+G F+ L V+ +D + +I+K E NV+F+ D
Sbjct: 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDAR-- 95
Query: 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKH 172
L+F + + D + +++ E+ ++ + + + LK G + + ++
Sbjct: 96 KLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKES 155
Query: 173 NPTHYRE 179
+
Sbjct: 156 LVVGQKY 162
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 2e-39
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 11/193 (5%)
Query: 265 STGGIETTKEFVAKLDLKP---GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISF 321
S G++ E+ A + P G +++D+GCG G + + +V+G+DLS M++
Sbjct: 22 SIEGLDGAAEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLAR 81
Query: 322 ALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT 381
A RA G + +E AD K P++SFD+ YS + +++D LF++ + L PGG
Sbjct: 82 A--RAAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGH 139
Query: 382 VLISDYCKSFGTPSVE--FSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT-EQFVQ 438
+ S + P+ + +R + + G D ++ RT +
Sbjct: 140 FVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLN 199
Query: 439 VLQR---ELDAIE 448
L R ++ +E
Sbjct: 200 ALIRSGFAIEHVE 212
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 1e-19
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 8/123 (6%)
Query: 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE 100
E P + ++LP G +++ G G G F + A +V+ LD + ++ +
Sbjct: 31 EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-T 89
Query: 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160
+ + AD+ L +DS D+ +S+ L Y+ D V +L + + L GG+ F S
Sbjct: 90 GITYERADLD--KLHLPQDSFDLAYSSLALHYVED--VARLFRTVHQALSPGGHFVF--S 143
Query: 161 CFH 163
H
Sbjct: 144 TEH 146
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 5e-39
Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 12/192 (6%)
Query: 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA 326
+ + + + G +D+G G G +A + D + +D S +M AL+
Sbjct: 28 IYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNI 86
Query: 327 I--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
L ++ D +N D+I SR ++ +D F+ ++ LK GG I
Sbjct: 87 ADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYI 146
Query: 385 SDYCKSFGTPSVEFSEYIKQR---------GYDLHDVKSYGQMLKDAGFVDIIAEDRTEQ 435
+ +E I++ +V+ + +L + G E
Sbjct: 147 GGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG 206
Query: 436 FVQVLQRELDAI 447
F ++ + +
Sbjct: 207 FWIIISKTDQEV 218
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 4e-12
Identities = 27/153 (17%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTG 70
E +K + + + N+ + + + + +++ G T ++ G+G G +
Sbjct: 4 ENKKKFDKKGAKNM---DEISKTLFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSI 59
Query: 71 ELAKKAG-HVIALDFIDSVI---KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFS 126
LAK++ + ALDF + KN + ++ + DV ++ ++ D++ S
Sbjct: 60 ALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVH--NIPIEDNYADLIVS 117
Query: 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159
+ + D E + + LK GG +
Sbjct: 118 RGSVFFWEDVA-TAFRE-IYRILKSGGKTYIGG 148
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-35
Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 8/193 (4%)
Query: 275 FVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKC 331
+ L P ++D GCG GG +F V G+ LS F RA + +
Sbjct: 108 LMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDD 167
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC-KS 390
V V + + + + ++ ++ +++ D LF ++LK GG + C
Sbjct: 168 HVRSRVCNMLDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP 226
Query: 391 FGTPSVEFSEYIKQRGY-DLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
++ I ++H + Y + + D V D T + + +
Sbjct: 227 RYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLV 286
Query: 450 D--KDAFIKDFSE 460
+ AFI+ + +
Sbjct: 287 TGIEKAFIESYRD 299
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-34
Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 14/177 (7%)
Query: 273 KEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
F+ + + VLD G G + + GI++S + A +
Sbjct: 12 YRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF 71
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCK 389
+ D K + + S +YS TI H++ D + LKPGG I+
Sbjct: 72 KLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131
Query: 390 -----SFGTPSVEFSEYIKQRGYDL----HDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
+ G E +RG + ++ + KD + EDR + +
Sbjct: 132 KDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK--EDRVVERI 186
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-14
Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 9/185 (4%)
Query: 55 GKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSP 112
KTVL+ GAG + + G ++ D +KK E + + D+
Sbjct: 24 DKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIR-- 81
Query: 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH--QSGDSKR 170
L F ++S+ ++S + ++ +V++ + + + LK GG + ++
Sbjct: 82 KLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEK 141
Query: 171 KHNPTHYREPRFYSKVFKECQIQDASG--NSFELSLVGYKCIGAYVKNKK-NQNQICWIW 227
+ R + +++A ++ + + K Q + +I
Sbjct: 142 IGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERINDGLKIKQGYVDYIA 201
Query: 228 QKVRS 232
+K
Sbjct: 202 EKFSK 206
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 4e-34
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 12/174 (6%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK 330
K PG KVL+ GCGIG +A D + ID+S + A E
Sbjct: 26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85
Query: 331 CS-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389
V+F A+ + ++SFD I+ + H+Q KS K LKPGGT+ + +
Sbjct: 86 IKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDH 145
Query: 390 S--FGTPSVE--------FSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433
+ P + + + +L+++GF I E R
Sbjct: 146 GSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRM 199
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-14
Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEE--VNGH 98
+ G VLE G GIG T LAK + ++D ++K E
Sbjct: 26 EKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG 85
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+NVKF+ A++ L F + S D +F ++L +L E E L + K LK GG I
Sbjct: 86 IKNVKFLQANIF--SLPFEDSSFDHIFVCFVLEHLQSPE-EALKS-LKKVLKPGGTITVI 141
Query: 159 ESCF 162
E
Sbjct: 142 EGDH 145
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 8e-32
Identities = 41/217 (18%), Positives = 77/217 (35%), Gaps = 25/217 (11%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI------ 327
+ G VLD+GCG G + + V+G+D+ N + A +
Sbjct: 76 LPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKF 135
Query: 328 ---GLKCSVEF------EVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKP 378
+ +V F +A + P++S D++ S +K ALFK + L+
Sbjct: 136 FGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRD 195
Query: 379 GGTVLISDYCKSFGTPS--VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
GG + SD + + ++ + +++ +AGF D+
Sbjct: 196 GGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVSVGPVD 255
Query: 437 VQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLSDT 473
V D + ++ +S F F + L T
Sbjct: 256 VS------DPQLRKLVPDVQFYSCTFRCFKVATLEAT 286
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 9e-12
Identities = 33/158 (20%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKK-------- 91
L EG TVL+ G G GR +K G VI +D +D+ ++
Sbjct: 72 CGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYH 131
Query: 92 --NEEVNGHFENVKFMCADVTS----PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERM 145
+ NV+F+ + + + SVD++ SN + ++K L + +
Sbjct: 132 AEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNK--LALFKEI 189
Query: 146 VKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFY 183
+ L+ GG ++F + + + +P Y E
Sbjct: 190 HRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGG 227
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-30
Identities = 40/192 (20%), Positives = 72/192 (37%), Gaps = 13/192 (6%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
+K +VLDVGCG G G + ++ + VG+D+S MI ER G + F D
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKLS-RTGYKAVGVDISEVMIQKGKERGEGPD--LSFIKGDL 107
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400
+ + F+ I + +++ ++ + LK G I+ + +
Sbjct: 108 SSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPR 167
Query: 401 -YIKQRGYDLHDVKSYGQMLKDAGFVDI---------IAEDRTEQFVQVLQRELDAIEKD 450
Y K + + Q++K+ GF + + E Q LQ+ L +
Sbjct: 168 LYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVYKRGVNEKMLGQLSTDLQQSLTFLWVF 227
Query: 451 KDAFIKDFSEVF 462
K+ E
Sbjct: 228 MLKRHKEMKEFL 239
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 3e-15
Identities = 28/153 (18%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 38 LDKEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEV 95
D R ++ Y + VL+ G G G T +L++ + +D + +I+K +E
Sbjct: 35 WDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKE- 93
Query: 96 NGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
G ++ F+ D++ L F + + + + L + + L E + + LK GY
Sbjct: 94 RGEGPDLSFIKGDLS--SLPFENEQFEAIMAINSLEWTEEPL-RALNE-IKRVLKSDGYA 149
Query: 156 FFRESCFHQSGDSKRKHNPTHYRE---PRFYSK 185
+ + + P Y +
Sbjct: 150 CI--AILGPTAKPRENSYPRLYGKDVVCNTMMP 180
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 4e-30
Identities = 40/185 (21%), Positives = 64/185 (34%), Gaps = 26/185 (14%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADK--FDVHVVGIDLSINMISFALERAI--GLKCSVEFE 336
L+PG V V CG + V +VGID + A A L +
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDK---PALFKSFFKWLKPGGTVLISDYC----- 388
D K E +D++ S ++ D L++ F++ LKPGG ++ S
Sbjct: 176 RQDAWKLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPAL 234
Query: 389 -------------KSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQ 435
+ F+ I+ R L L++AGF D+ ED +
Sbjct: 235 SPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRAR 294
Query: 436 FVQVL 440
+
Sbjct: 295 LFPTV 299
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 68.2 bits (166), Expect = 7e-13
Identities = 31/171 (18%), Positives = 51/171 (29%), Gaps = 19/171 (11%)
Query: 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVL-----SLLPPYEG 55
G + R + A L E + + + L ER L P G
Sbjct: 64 RGLNAEWTHRLVTHQPGSGALAPL--ERVFYERLPAVLATRERHGHFRRALQRHLRP--G 119
Query: 56 KTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVI---KKNEEVNGHFENVKFMCADV 109
V G L A ++ +D+ + + + + D
Sbjct: 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA 179
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRE 159
D + D++ SN L +Y D V +L R + LK GG +
Sbjct: 180 WKLDT---REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSF 227
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-29
Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 4/161 (2%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVE 334
L +KPG ++LD+G G G A + GID+S + A RA +G+ V
Sbjct: 30 RVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVH 89
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP 394
F D DV + + LKPGG +LI +
Sbjct: 90 FIHNDAAGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA 148
Query: 395 SVEFSEYIKQ-RGYDLHDVKSYGQMLKDAGFVDIIAEDRTE 434
+ E ++ D + D G+ + +
Sbjct: 149 TEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQ 189
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-27
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 12/198 (6%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKC 331
+ + + LK G VLDVG G G Y++ V ID+ M+++A E+ L
Sbjct: 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL 87
Query: 332 S-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
VE ++ K P+N+ D I+ T + + + + KP + I D+ K
Sbjct: 88 KNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE 147
Query: 391 FGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKD 450
+++ G +L+DAG + + V + E++
Sbjct: 148 ERDKGPPP--------EEVYSEWEVGLILEDAGIRVGRVVEVGKYCFGVYAMIVKQ-EEE 198
Query: 451 KDAFIKDFSEVFCFFHLD 468
F H
Sbjct: 199 NPLMNVPFKIPPGEGHHH 216
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 7e-16
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 33 SKASDLDKEERP------EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALD 83
SK LD R +VL EG TVL+ G G G + L+K G V A+D
Sbjct: 10 SKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID 69
Query: 84 FIDSVIKKNEE--VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKL 141
+ ++ E +NV+ + ++ + +++VD +F + LS+ + L
Sbjct: 70 VQEEMVNYAWEKVNKLGLKNVEVLKSEEN--KIPLPDNTVDFIFMAFTFHELSEPL-KFL 126
Query: 142 AERMVKWLKVGGYIFFRE 159
E + + K Y+ +
Sbjct: 127 EE-LKRVAKPFAYLAIID 143
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-26
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 8/121 (6%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
+E +E++ + ++D GCG G Y+ + + ID+++ + E+
Sbjct: 3 LERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK--- 58
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
+ + K P+NS D I ++ + DK + + LK G V+I D+
Sbjct: 59 ----FDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWR 114
Query: 389 K 389
K
Sbjct: 115 K 115
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-15
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 42 ERPE-VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE 100
ERPE L + + ++++G G G + L + A + +D +K+ + E
Sbjct: 4 ERPEEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVK------E 57
Query: 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159
+ ++SVD + + DK+ ++E + + LK G + +
Sbjct: 58 KFDSVITLSD--PKEIPDNSVDFILFANSFHDMDDKQ-HVISE-VKRILKDDGRVIIID 112
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 1e-26
Identities = 35/202 (17%), Positives = 62/202 (30%), Gaps = 25/202 (12%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFE 336
+ ++D GCG G + GID +++ A E L EF
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL 77
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV 396
D T+ + +D+ +LH+ + + +K GG ++ + S
Sbjct: 78 EGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY 136
Query: 397 E------------------FSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQ 438
F ++ G D + L + G +I E R V
Sbjct: 137 LLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNI--ECRVSDKVN 194
Query: 439 VLQRELDAIEKDKDAFIKDFSE 460
L + DK+ + E
Sbjct: 195 FLDSNMH--HNDKNDLYQSLKE 214
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 4e-13
Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
Query: 49 LLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKK-NEEVNGHFENVKF 104
+ + ++++G G G L +D ++++ + E + +F
Sbjct: 17 VWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEF 76
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160
+ D T +L D D+ + L++++ E + ++M+ +K GG I E
Sbjct: 77 LEGDATEIEL---NDKYDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEP 127
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-26
Identities = 28/185 (15%), Positives = 64/185 (34%), Gaps = 16/185 (8%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID 313
E + G + + + +LDVG G G ++A + G++
Sbjct: 15 DAEALLGTV---ISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASL-GHQIEGLE 70
Query: 314 LSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKS 371
+ ++ A + V F T + + + + +++H+ + P +
Sbjct: 71 PATRLVELARQTHPS----VTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVA 126
Query: 372 FFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431
++ GG +L+S S + + + L + Q L+ AGF + +
Sbjct: 127 LRMAVEDGGGLLMS--FFSGPSLEPMYHPVATAYRWPLPE---LAQALETAGF-QVTSSH 180
Query: 432 RTEQF 436
+F
Sbjct: 181 WDPRF 185
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 9e-15
Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 9/147 (6%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
++ +L+ G+G GR+TG LA + L+ +++ + +V F
Sbjct: 32 VLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQ---THPSVTF 88
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ 164
+T DL+ S + + + L+++ E+ + ++ GG + S F
Sbjct: 89 HHGTIT--DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLM--SFFSG 144
Query: 165 SGDSKRKH--NPTHYREPRFYSKVFKE 189
H + ++ +
Sbjct: 145 PSLEPMYHPVATAYRWPLPELAQALET 171
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 3e-26
Identities = 35/188 (18%), Positives = 60/188 (31%), Gaps = 17/188 (9%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL 329
++ + + K VL+ G G G + V GI+ S M A E+
Sbjct: 32 AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLPK- 89
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDY 387
D P S D I S H+ D K + + L GG ++ +D
Sbjct: 90 --EFSITEGDFLSFEVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADT 146
Query: 388 CKSFGTPSVEFSEYIKQRGYD----------LHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
+ + E KQRG+ + + ++ GF +V
Sbjct: 147 IFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWV 206
Query: 438 QVLQRELD 445
++L+
Sbjct: 207 MEATKQLE 214
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 1e-16
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 5/137 (3%)
Query: 27 EAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID 86
+ + ++L + VLEFG G G T +L V ++
Sbjct: 18 SFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSR 77
Query: 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV 146
+ +E D S ++ S+D + S + +L+D E +
Sbjct: 78 EMRMIAKEKLPK--EFSITEGDFLSFEV---PTSIDTIVSTYAFHHLTDDEKNVAIAKYS 132
Query: 147 KWLKVGGYIFFRESCFH 163
+ L GG I F ++ F
Sbjct: 133 QLLNKGGKIVFADTIFA 149
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 16/168 (9%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
++ + L+ +PG+ +LD+GCG G +A V+G D + MI A +
Sbjct: 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNYPH---- 101
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY-CKSF 391
+ F+VAD + D ++S + +++ A S + LK GG + +
Sbjct: 102 LHFDVADARNFR-VDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNI 160
Query: 392 GTPSVEFSEYIKQRGYD---------LHDVKSYGQMLKDAGFVDIIAE 430
++ G + Y +L+ GF A
Sbjct: 161 KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAA 208
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 3e-14
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
++L LL P G+ +L+ G G G+ T ++A+ V+ D ++I+K + ++ ++ F
Sbjct: 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQ---NYPHLHF 104
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
AD + + +D +FSN +L ++ + E + + LK GG
Sbjct: 105 DVADAR--NFRV-DKPLDAVFSNAMLHWVKEP--EAAIASIHQALKSGGRFVA 152
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 2/144 (1%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
E L + VLD+GCG G Y A+ V+GIDLS M++ A +
Sbjct: 33 WHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV- 91
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V +E ++++V+ S + +I + K + LK G+ + S F
Sbjct: 92 -VCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVF 150
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSY 415
+ + V Y
Sbjct: 151 TADGRQDWYTDETGNKLHWPVDRY 174
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 1e-18
Identities = 30/146 (20%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 13 QKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGEL 72
+ Y +H + M SK E E+ +LP + KTVL+ G G G
Sbjct: 5 ENKYDDKHFFE--QYSQMPRSKEGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYA 62
Query: 73 AKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131
A+ A V+ +D + ++ + + V + + D+ D+ +++ S+ L
Sbjct: 63 AEHGAKKVLGIDLSERMLTEAKRKTTS-PVVCYEQKAIE--DIAIEPDAYNVVLSSLALH 119
Query: 132 YLSDKEVEKLAERMVKWLKVGGYIFF 157
Y++ + + +++ LK G F
Sbjct: 120 YIAS--FDDICKKVYINLKSSGSFIF 143
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-25
Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 8/167 (4%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VE 334
+ + + +VLD+G G G + +G+D + M+ A A V
Sbjct: 14 IKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVR 72
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP 394
F+ +P++SFD+I R H D + + LK G L+ D+
Sbjct: 73 FQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPV 132
Query: 395 SVEFSEYIKQRGYDLHDVKSYG-----QMLKDAGFVDIIAEDRTEQF 436
EF ++ R D V+ M +
Sbjct: 133 LDEFVNHL-NRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPI 178
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 31/175 (17%), Positives = 57/175 (32%), Gaps = 15/175 (8%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEE--VNGH 98
++ VL+ GAG G + I +D +++
Sbjct: 8 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG 67
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
ENV+F L F +DS D++ + + SD + + E + + LK G
Sbjct: 68 VENVRFQQGTAE--SLPFPDDSFDIITCRYAAHHFSDVR-KAVRE-VARVLKQDGRFLLV 123
Query: 159 ESCFHQSGDSKRKHN-------PTHYREPRF--YSKVFKECQIQDASGNSFELSL 204
+ + N P+H RE + +F Q+ + L +
Sbjct: 124 DHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPI 178
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 3e-25
Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 33/216 (15%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC 331
++ +A++ L+ D+GCG G + D++ + GID +M+ A +R
Sbjct: 23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN--- 79
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
F AD P D++Y+ + D A+ L+ GG + + +
Sbjct: 80 -TNFGKADLATWK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD-NL 136
Query: 392 GTPSVE--------------FSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
P+ FS +R L Y L V
Sbjct: 137 QEPTHIAMHETADGGPWKDAFSGGGLRRKP-LPPPSDYFNALSPKSS-----------RV 184
Query: 438 QVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLSDT 473
V + KD D+ ++ +L +
Sbjct: 185 DVWHTVYNHPMKDADSIVEWVKGTGLRPYLAAAGEE 220
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 4e-13
Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENV 102
++L+ +P + G G G T L + + +D D ++ E+ N
Sbjct: 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDML---EKAADRLPNT 80
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
F AD+ + D++++N + ++ D + +++ L+ GG +
Sbjct: 81 NFGKADLATWKP---AQKADLLYANAVFQWVPDH--LAVLSQLMDQLESGGVLAV 130
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-25
Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 21/179 (11%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA 338
VL++ G G +++ V +D S MI+ A + +VEF
Sbjct: 42 RAGNIRGDVLELASGTGYWTRHLSGLA-DRVTALDGSAEMIAEAGRHGLD---NVEFRQQ 97
Query: 339 DCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSV 396
D T P+ +D ++ + H+ D A ++S + PGG V D
Sbjct: 98 DLFDWT-PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQ 156
Query: 397 EF----SEYIKQRGYD---------LHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQR 442
+ +++ D + L G+ ++ F+ R
Sbjct: 157 QDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGW-SCSVDEVHPGFLYATCR 214
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 4e-16
Identities = 35/182 (19%), Positives = 62/182 (34%), Gaps = 13/182 (7%)
Query: 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLE 60
M T E Q +Y+ ++ + +D + L VLE
Sbjct: 1 MTTSHGLIES--QLSYYRARASEY------DATFVPYMDSAAPAALERLRAGNIRGDVLE 52
Query: 61 FGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120
+G G +T L+ A V ALD +I + +NV+F D+ +
Sbjct: 53 LASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGL--DNVEFRQQDLFDWTP---DRQ 107
Query: 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180
D +F L ++ D E E + + GG + F + H+ ++ +
Sbjct: 108 WDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVR 167
Query: 181 RF 182
R
Sbjct: 168 RT 169
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 8e-25
Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 19/177 (10%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID 313
YER F E A L P + +++G G G F + K +G++
Sbjct: 23 EYERWF-----LVHRFAYLSELQAVKCLLPEGRGVEIGVG--TGRFAVPLK---IKIGVE 72
Query: 314 LSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFF 373
S M A +R + + SFD TI + D K +
Sbjct: 73 PSERMAEIARKRGV------FVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAY 126
Query: 374 KWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYD---LHDVKSYGQMLKDAGFVDI 427
+ LK GG +++ + K Y + +++ AGF +
Sbjct: 127 RILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 183
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 3e-08
Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 21/157 (13%)
Query: 33 SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKN 92
E V LLP +E G G GRF L I ++ + + +
Sbjct: 29 LVHRFAYLSELQAVKCLLP---EGRGVEIGVGTGRFAVPLKI----KIGVEPSERMAEIA 81
Query: 93 EEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG 152
+ V + +L ++S D + ++ D E L E + LK G
Sbjct: 82 RK-----RGVFVLKGTAE--NLPLKDESFDFALMVTTICFVDDPE-RALKE-AYRILKKG 132
Query: 153 GYIFF----RESCFHQSGDSKRKHNPTHYREPRFYSK 185
GY+ RES + K K Y+ RF+S
Sbjct: 133 GYLIVGIVDRESFLGRE-YEKNKEKSVFYKNARFFST 168
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-24
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 12/150 (8%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
G K+LD GCG G Y++ + V+G DL +I +A + + V D
Sbjct: 44 APRGAKILDAGCGQGRIGGYLSKQG-HDVLGTDLDPILIDYAKQDFPE----ARWVVGDL 98
Query: 341 TKKTYPENSFDVIYSRDTILHI---QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE 397
+ E FD+I S ++ + + + L G +I + G +
Sbjct: 99 SVDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVI-GFGAGRGWVFGD 157
Query: 398 FSEYIKQRGYDLHDVKS---YGQMLKDAGF 424
F E ++ G +L + ++ + F
Sbjct: 158 FLEVAERVGLELENAFESWDLKPFVQGSEF 187
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 5e-13
Identities = 29/147 (19%), Positives = 57/147 (38%), Gaps = 12/147 (8%)
Query: 17 WMEHSANLTVEAMMLDSKASDL-----DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGE 71
W E + N + + +L D ++ + P G +L+ G G GR G
Sbjct: 5 WKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAP-RGAKILDAGCGQGRIGGY 63
Query: 72 LAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131
L+K+ V+ D +I ++ F +++ D++ SE D++ S +M
Sbjct: 64 LSKQGHDVLGTDLDPILIDYAKQ---DFPEARWVVGDLS--VDQISETDFDLIVSAGNVM 118
Query: 132 -YLSDKEVEKLAERMVKWLKVGGYIFF 157
+L++ E + + L G
Sbjct: 119 GFLAEDGREPALANIHRALGADGRAVI 145
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-24
Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 18/188 (9%)
Query: 14 KNYWMEHSANLTVEAMM--------LDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGI 65
K YW + TV+ M+ +D +S K + + L+ GAGI
Sbjct: 35 KTYWKQIPP--TVDGMLGGYGHISSIDINSSR--KFLQRFLREGPNKTGTSCALDCGAGI 90
Query: 66 GRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVD 122
GR T L V +D + + + + G + C + D T DS D
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ--DFTPEPDSYD 148
Query: 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRF 182
+++ W++ +L+D+ + + R L+ G I +++ Q G + + R+
Sbjct: 149 VIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM-AQEGVILDDVDSSVCRDLDV 207
Query: 183 YSKVFKEC 190
++
Sbjct: 208 VRRIICSA 215
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 1e-21
Identities = 37/206 (17%), Positives = 78/206 (37%), Gaps = 20/206 (9%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKL-----DLKPGQKVLDVGCG 293
+ + + ++G+L G G +S+ I ++++F+ + + LD G G
Sbjct: 35 KTYWKQIPPTVDGMLG-----GYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 89
Query: 294 IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VEFEVADCTKKTYPENSFDV 352
IG + V +D++ + + A + T +S+DV
Sbjct: 90 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDV 149
Query: 353 IYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410
I+ + I H+ D+ + L+P G ++I D G + +
Sbjct: 150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSV------CR 203
Query: 411 DVKSYGQMLKDAGFVDIIAEDRTEQF 436
D+ +++ AG ++AE+R E
Sbjct: 204 DLDVVRRIICSAGL-SLLAEERQENL 228
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 99.9 bits (249), Expect = 6e-24
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 16/174 (9%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGD--FYMADKFDVHVVGIDLSINMISFALERAIGLK 330
+ + LK ++VLDV G GG A VV DL+ +++ A G
Sbjct: 27 AKLMQIAALKGNEEVLDVATG--GGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNG 83
Query: 331 CS-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389
VE+ D + + + F ++ R H + + ++ LK GG +L+ D
Sbjct: 84 HQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 143
Query: 390 SFGTPSVEFSEYIKQ-------RGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
F Y+++ R + D +ML++AGF + F
Sbjct: 144 PENDAFDVFYNYVEKERDYSHHRAWKKSDWL---KMLEEAGFELEELHCFHKTF 194
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEE--VNGH 98
+ +++ + + VL+ G G A V+A D + ++K
Sbjct: 24 SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG 83
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
+ V+++ D + F+++ ++ + + ++E + LK GG +
Sbjct: 84 HQQVEYVQGDAE--QMPFTDERFHIVTCRIAAHHFPNPA-SFVSE-AYRVLKKGGQLLLV 139
Query: 159 ESCFHQSGDSKRKHN-------PTHYR 178
++ ++ +N +H+R
Sbjct: 140 DNSAPENDAFDVFYNYVEKERDYSHHR 166
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 9e-24
Identities = 36/182 (19%), Positives = 68/182 (37%), Gaps = 17/182 (9%)
Query: 255 YERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDL 314
Y T +F+ +L G K+L++GCG G M V D
Sbjct: 17 YRGNATAYAERQPRSATLTKFLG--ELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDG 73
Query: 315 SINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSF 372
S + + A R ++ F D +++D +++ +LH+ + + K
Sbjct: 74 SPELAAEASRRLGRPVRTMLFHQLD------AIDAYDAVWAHACLLHVPRDELADVLKLI 127
Query: 373 FKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432
++ LKPGG S+ + E + + R Y+ + +AG +A +
Sbjct: 128 WRALKPGGLFYA-----SYKSGEGEGRDKL-ARYYNYPSEEWLRARYAEAGTWASVAVES 181
Query: 433 TE 434
+E
Sbjct: 182 SE 183
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-11
Identities = 26/154 (16%), Positives = 49/154 (31%), Gaps = 17/154 (11%)
Query: 32 DSKASDLDKEERPE-----VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID 86
A+ + + L LP G +LE G G G + V A D
Sbjct: 18 RGNATAYAERQPRSATLTKFLGELPA--GAKILELGCGAGYQAEAMLAAGFDVDATDGSP 75
Query: 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV 146
+ + G D D+ D ++++ L+++ E+ + + +
Sbjct: 76 ELAAEASRRLGR----PVRTMLFHQLDA---IDAYDAVWAHACLLHVPRDELADVLKLIW 128
Query: 147 KWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180
+ LK GG + + R +Y P
Sbjct: 129 RALKPGGLFYA---SYKSGEGEGRDKLARYYNYP 159
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 2e-23
Identities = 39/176 (22%), Positives = 75/176 (42%), Gaps = 11/176 (6%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV 333
+V + ++PG+++ D+GCG G +AD ++V G+DLS M+ A E+A+ V
Sbjct: 25 AWVLEQ-VEPGKRIADIGCGTGTATLLLADHYEV--TGVDLSEEMLEIAQEKAMETNRHV 81
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKP---ALFKSFFKWLKPGGTVLI---SDY 387
+F V D + PE + D++ ++Q + F S + L GG +L S Y
Sbjct: 82 DFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141
Query: 388 CKSFGTPSVEFSEYIKQRGYDLHDVKSY--GQMLKDAGFVDIIAEDRTEQFVQVLQ 441
++ + +Q Y ++ + F + R ++ +
Sbjct: 142 KMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHH 197
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH-VIALDF----IDSVIKKNEE 94
E VL + P GK + + G G G T LA + V +D ++ +K E
Sbjct: 21 PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAME 76
Query: 95 VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGY 154
N +V F D+ +L D++ + + L ++ +V++ + + L GG
Sbjct: 77 TN---RHVDFWVQDMRELELPEPVDAI-TILCDSLNYLQTEADVKQTFDSAARLLTDGGK 132
Query: 155 IFF 157
+ F
Sbjct: 133 LLF 135
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 3e-23
Identities = 32/184 (17%), Positives = 63/184 (34%), Gaps = 16/184 (8%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID 313
+ G + + T + + + + ++VLD+GCG G +AD+ + VG+D
Sbjct: 23 AWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG-IEAVGVD 81
Query: 314 LSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFF 373
++ A G + K +D+I + L QD L +
Sbjct: 82 GDRTLVDAARAAGAGEVHLASYAQLAEA-KVPVGKDYDLICANFA-LLHQDIIELLSAMR 139
Query: 374 KWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVK------------SYGQMLKD 421
L PGG ++I + ++ + ++ + S+ L
Sbjct: 140 TLLVPGGALVIQTLHP-WSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM 198
Query: 422 AGFV 425
AG
Sbjct: 199 AGLR 202
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-13
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 10/152 (6%)
Query: 32 DSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK 91
+ +L + + + VL+ G G G LA + + +D +++
Sbjct: 30 HGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDA 89
Query: 92 -NEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLK 150
G + D++ +N+ L++ +++ +L M L
Sbjct: 90 ARAAGAGEVHLASYAQLAEAKV---PVGKDYDLICANFALLH---QDIIELLSAMRTLLV 143
Query: 151 VGGYIFFRESCFHQSGDSKRKHNPTHYREPRF 182
GG + H +RE F
Sbjct: 144 PGGALVI--QTLHP-WSVADGDYQDGWREESF 172
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 3e-23
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 25/170 (14%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
+LD+G G G ++ +K+ + +D+S M+ A R G V++ AD
Sbjct: 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEAD 100
Query: 340 CTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTP--- 394
+K E +D++ S +I H++ DK L+K + LK G + +D
Sbjct: 101 YSKYD-FEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN 159
Query: 395 --SVEFSEYIKQRGYDLHDVKS---------------YGQMLKDAGFVDI 427
+ +Y++ G ++ + LK+AGF D+
Sbjct: 160 LNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDV 209
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADV 109
E +L+ GAG G + L +K +D + +++ + VK++ AD
Sbjct: 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY 101
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159
+ D E+ DM+ S + +L D++ ++L +R LK G +
Sbjct: 102 SKYDF---EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINAD 148
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 4e-23
Identities = 28/165 (16%), Positives = 60/165 (36%), Gaps = 7/165 (4%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
+ L+L G + D+G G GG +A++ + V ++ SI M A+
Sbjct: 24 NAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-----Q 77
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392
VE+ P+ S D + S I H F+ + ++ G VL++ +
Sbjct: 78 VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQ 137
Query: 393 TPSV-EFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
+ ++ ++ + + +L++ + A
Sbjct: 138 RIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVEAIPFLLPH 182
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 9/164 (5%)
Query: 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH 98
D +++LL +G + + GAG G ++ LA + V A++ + ++
Sbjct: 19 DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVV---- 74
Query: 99 FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
V++ +L + SVD + S + + S E E M + ++ G +
Sbjct: 75 HPQVEWFTGYAE--NLALPDKSVDGVISILAIHHFSHLEKS-FQE-MQRIIRDGTIVLLT 130
Query: 159 ESCFHQSGDSKRKHNPTHY-REPRFYSKVFKECQIQDASGNSFE 201
+ P + RF + +Q+ + E
Sbjct: 131 FDIRLAQRIWLYDYFPFLWEDALRFLPLDEQINLLQENTKRRVE 174
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 97.3 bits (242), Expect = 5e-23
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 13/187 (6%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312
Y+R+ + + + L++G G G + + + +
Sbjct: 11 AYDRLRA--HPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIAL 67
Query: 313 DLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSF 372
D M+ ++ G+ V+ AD P+ S + + D P +
Sbjct: 68 DADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEA 127
Query: 373 FKWLKPGGTVLISDYCKSFGTPSVEFSEYIK---------QRGYDLHDVKSYGQMLKDAG 423
+ LKPGG +L + +RG +K + L+ G
Sbjct: 128 IRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLG 187
Query: 424 FVDIIAE 430
E
Sbjct: 188 LKPRTRE 194
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 3e-13
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNG 97
+ ++ P E LE G G GR L + IALD ++++ +++ G
Sbjct: 24 GQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAG 83
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
V+ + AD + ++SV + L + D LAE ++ LK GG +
Sbjct: 84 VDRKVQVVQADAR--AIPLPDESVHGVIVVHLWHLVPDWPKV-LAE-AIRVLKPGGALLE 139
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 2e-22
Identities = 32/171 (18%), Positives = 60/171 (35%), Gaps = 17/171 (9%)
Query: 275 FVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
+ + + P ++D CG G +++ F V+G+D+S + + A + +
Sbjct: 46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAA--N 102
Query: 333 VEFEVADCTK----KTYPENSFDV-IYSRDTILHI--QDKPALFKSFFKWLKPGGTVLIS 385
+ + + D D IY R HI + + L +S L G + +
Sbjct: 103 ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLI 162
Query: 386 DYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
+ E Q Y+L V +G ++ F ED F
Sbjct: 163 ELGTGCIDFFNSLLEKYGQLPYELLLVMEHG--IRPGIFTA---EDIELYF 208
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 7e-12
Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 8/147 (5%)
Query: 16 YWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK 75
YW + N ++ D+ + P L P +++F G G T L++
Sbjct: 22 YWNKTLVN--STPVLWDANVERAVVVDLPRFELLFNP--ELPLIDFACGNGTQTKFLSQF 77
Query: 76 AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--LTFSEDSVDMM-FSNWLLMY 132
VI LD S ++ + N N+ + D P+ + D + +
Sbjct: 78 FPRVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH 136
Query: 133 LSDKEVEKLAERMVKWLKVGGYIFFRE 159
+ ++ E L + + L G ++ E
Sbjct: 137 IPVEKRELLGQSLRILLGKQGAMYLIE 163
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 91.4 bits (227), Expect = 2e-21
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGI 312
YE +G + +E K L PG+ +L+VG G G Y + VG+
Sbjct: 9 AYEAWYGT--PLGAYVIAEEERALKGLLPPGESLLEVGAGTG----YWLRRLPYPQKVGV 62
Query: 313 DLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSF 372
+ S M++ RA + A +P SFDV+ T+ ++D +
Sbjct: 63 EPSEAMLAVGRRRAPE----ATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEA 118
Query: 373 FKWLKPGGTVLISD 386
+ L+PGG +++
Sbjct: 119 RRVLRPGGALVVGV 132
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 6e-10
Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 15/163 (9%)
Query: 27 EAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID 86
EA + + EE + LLPP G+++LE GAG G + L + ++ +
Sbjct: 11 EAWYGTPLGAYVIAEEERALKGLLPP--GESLLEVGAGTGYWLRRLP--YPQKVGVEPSE 66
Query: 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV 146
+++ ++ A L F +S D++ L ++ D E L E
Sbjct: 67 AMLAVGRR---RAPEATWVRAWGE--ALPFPGESFDVVLLFTTLEFVEDVE-RVLLE-AR 119
Query: 147 KWLKVGGYI----FFRESCFHQSGDSKRKHNPTHYREPRFYSK 185
+ L+ GG + S + + + + RF ++
Sbjct: 120 RVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAR 162
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 1e-20
Identities = 36/146 (24%), Positives = 56/146 (38%), Gaps = 12/146 (8%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK-FDVHVVGI 312
R E F + T T E + + + K LD+GCG G Y+A +D V
Sbjct: 6 RDENYFTDKYELT---RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYD--VDAW 60
Query: 313 DLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDK--PAL 368
D + I+ L ++ V D T+ +D I S ++ ++ K P L
Sbjct: 61 DKNAMSIANVERIKSIENLD-NLHTRVVDLNNLTFDR-QYDFILSTVVLMFLEAKTIPGL 118
Query: 369 FKSFFKWLKPGGTVLISDYCKSFGTP 394
+ + KPGG LI + P
Sbjct: 119 IANMQRCTKPGGYNLIVAAMDTADYP 144
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-15
Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 7/136 (5%)
Query: 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEV--NGHFEN 101
EVL + + L+ G G GR + LA V A D I E + + +N
Sbjct: 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDN 81
Query: 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161
+ D+ + + D + S +LM+L K + L M + K GGY
Sbjct: 82 LHTRVVDLNNLTF---DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI--VA 136
Query: 162 FHQSGDSKRKHNPTHY 177
+ D
Sbjct: 137 AMDTADYPCTVGFPFA 152
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 8e-20
Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 23/171 (13%)
Query: 254 RYE-RVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312
RY+ + G + + + L+P ++L +GCG + + +V +
Sbjct: 13 RYQGAADSAPYDWFGDFSSFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSV 71
Query: 313 DLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI---------- 362
D S +++ + + +E D K +P SFDV+ + T+ +
Sbjct: 72 DYSSVVVAAMQACYAHVP-QLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTV 130
Query: 363 -----QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYD 408
+ + L PGG + + P + + Q Y
Sbjct: 131 SSEGVHTVDQVLSEVSRVLVPGGRFISM----TSAAPHFR-TRHYAQAYYG 176
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 3e-10
Identities = 23/129 (17%), Positives = 39/129 (30%), Gaps = 5/129 (3%)
Query: 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG 97
R + L P +L G G + EL +V ++D+ V+ +
Sbjct: 29 FSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYA 86
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
H +++ DV L F S D++ L L E + V +
Sbjct: 87 HVPQLRWETMDVR--KLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSE 144
Query: 158 RESCFHQSG 166
G
Sbjct: 145 VSRVLVPGG 153
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 2e-19
Identities = 28/206 (13%), Positives = 53/206 (25%), Gaps = 27/206 (13%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI------ 327
+KPG+K+L++GCG G +AD+ HV GID++ L
Sbjct: 36 AEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLL 95
Query: 328 --GLKCSVEFEVADC---TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTV 382
L + + FD + ++ + AL F V
Sbjct: 96 AGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHV 155
Query: 383 LISDYCKSFGTPS--VEFSEYIKQRGYDLHDVKSYG------------QMLKDAGFVDII 428
++++ + Q Q+ D +
Sbjct: 156 DVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTA 215
Query: 429 AEDRTEQFVQVLQRELDAIEKDKDAF 454
+ + E+
Sbjct: 216 GTIVEDPTLDDAHWEIATTNALLTEL 241
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 2e-09
Identities = 24/147 (16%), Positives = 39/147 (26%), Gaps = 17/147 (11%)
Query: 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVI------- 89
R + G+ +LE G G G + LA + +GHV +D
Sbjct: 29 TAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG 88
Query: 90 ----KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERM 145
G V F ++ D + L Y + LA
Sbjct: 89 QAWNHLLAGPLGDRLTVHFNTNLSDDL-GPIADQHFDRVVLAHSLWYFASA--NALALLF 145
Query: 146 VKWLKVGGYIFFRESCFHQSGDSKRKH 172
V ++ E + + H
Sbjct: 146 KNMAAVCDHVDVAEWSMQPTALDQIGH 172
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-19
Identities = 36/181 (19%), Positives = 66/181 (36%), Gaps = 46/181 (25%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI------GLKCSVE 334
L+ ++LD+GCG G +A K V GID++ I A A E
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAE 86
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSF 391
F+V + + ++ ++SFD + + + D + + K F+ LKPG + + ++ +++
Sbjct: 87 FKVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW 146
Query: 392 GTPSVEFSEYIKQRGYDLH--------------DVKSY--------------GQMLKDAG 423
R LH D ++ +L D
Sbjct: 147 HLKL--------YRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCR 198
Query: 424 F 424
F
Sbjct: 199 F 199
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 23/156 (14%)
Query: 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGE 71
+ ++YW + S K + P + + L +L+ G G G+ + E
Sbjct: 1 MPESYWEKVS-----------GKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLE 47
Query: 72 LAKKAGHVIALDFIDSVIKKNEE-------VNGHFENVKFMCADVTSPDLTFSEDSVDMM 124
LA K V +D I+ E +F + + L+F + S D
Sbjct: 48 LASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENAS--SLSFHDSSFDFA 105
Query: 125 FSNWLLMYLSDKEVEKLAER-MVKWLKVGGYIFFRE 159
L + D + + + + LK G Y++ E
Sbjct: 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVE 141
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 4e-18
Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 1/115 (0%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVE 334
V+ + P K+L + G G ++A V +D S ++ A + A +
Sbjct: 21 LVSVANQIPQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKIT 79
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389
++ ++++ I S L + L+ ++ LKPGG ++ +
Sbjct: 80 TVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-10
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 10/154 (6%)
Query: 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNGHFENV 102
++S+ +L G GR LA V A+D + K + +
Sbjct: 19 DFLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKI 78
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162
+ +++ D D+ + + S + +L ++L ++ + LK GG F
Sbjct: 79 TTVQSNLA--DFDIVADAWEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFIL--EGF 132
Query: 163 HQSG---DSKRKHNPTHYREPRFYSKVFKECQIQ 193
++ + +
Sbjct: 133 APEQLQYNTGGPKDLDLLPKLETLQSELPSLNWL 166
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 8e-18
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL 329
F+ + LK +VLD+G G G ++ ++ VV +D S M+ A E+ +
Sbjct: 42 RLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-- 97
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILH-IQDKPALFKSFFKWLKPGGTVLISD 386
A +P +F+ + + +L +++K F + L P G ++ +
Sbjct: 98 ---KNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV 152
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 4e-08
Identities = 25/159 (15%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 29 MMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSV 88
M K + + L VL+ G G G+++ L ++ V+ +D +
Sbjct: 31 MYETPKWKLYHRLIGSFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEM 88
Query: 89 IKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFS-NWLLMYLSDKEVEKLAERMVK 147
++ E + A DL F + + + + +L Y+ +K+ + +E + +
Sbjct: 89 LEVAREKG----VKNVVEAKAE--DLPFPSGAFEAVLALGDVLSYVENKD-KAFSE-IRR 140
Query: 148 WLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186
L G + F+ + + + RF
Sbjct: 141 VLVPDGLLIATVDNFY-TFLQQMIEKDAWDQITRFLKTQ 178
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 1e-17
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 13/106 (12%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
L P +VL+ GCG G + D S ++ A A + +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPH----ADVYEWNG 100
Query: 341 TKKT--YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ F +I SR + ++ + P L
Sbjct: 101 KGELPAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLY 140
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 2e-09
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 15/114 (13%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
+ LL P VLE G G G +A A DF ++ + + +
Sbjct: 41 WLSRLLTP--QTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELL---KLARANAPHADV 95
Query: 105 MCADVTSPDLTFSEDSV-DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+ +L + ++ S + + R+ + + +
Sbjct: 96 YEWNGKG-ELPAGLGAPFGLIVSR--------RGPTSVILRLPELAAPDAHFLY 140
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 80.6 bits (199), Expect = 3e-17
Identities = 38/180 (21%), Positives = 72/180 (40%), Gaps = 7/180 (3%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
I+ +E + + ++VLD+ CG G +A++ VVG+DL M+ A +A
Sbjct: 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKE 85
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSR-DTILHI--QDKPALFKSFFKWLKPGGTVLI- 384
+EF D + + FD + TI++ +D LF + LKPGG +
Sbjct: 86 RNLKIEFLQGDVLEIAFKN-EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 385 -SDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRE 443
+ V ++E + + D + ++ F ++ R V+ +
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVD 204
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNGHFENVK 103
E+ E + VL+ G G T ELA++ V+ LD + +++ + ++
Sbjct: 32 EIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIE 91
Query: 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
F+ DV D+V M FS +MY ++++ KL ++ + LK GG
Sbjct: 92 FLQGDVLEIAFKNEFDAVTMFFST--IMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-17
Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 32/161 (19%)
Query: 282 KPGQKVLDVGCGIGGGDF--YMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
K ++VLD+GC G + + V GI+ A E+ V +
Sbjct: 31 KEWKEVLDIGCS--SGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKLD----HVVLGDIE 83
Query: 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399
Y E FD + D + H+ D A+ + ++K G +L S P+V
Sbjct: 84 TMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS-------IPNVSHI 136
Query: 400 EYIKQR---GYDLHDV-------------KSYGQMLKDAGF 424
+ + + +M AG+
Sbjct: 137 SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 2e-08
Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 8/115 (6%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENV 102
P +L + E K VL+ G G + + V ++ ++ +E ++V
Sbjct: 22 NPNLLKHIKK-EWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKE---KLDHV 77
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
D+ + D+ + E+ D + +L +L D + E++ ++K G I
Sbjct: 78 VL--GDIETMDMPYEEEQFDCVIFGDVLEHLFD--PWAVIEKVKPYIKQNGVILA 128
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 3e-17
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGD-FYMADKFDVHVVGIDLSINMISFALERAI 327
+E K A + G++ + +G G ++ + + V +++ ++ + +
Sbjct: 108 LELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE 167
Query: 328 GLK-CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
GL V D T FDV+ + K +F++ +++ ++
Sbjct: 168 GLGVDGVNVITGDETV--IDGLEFDVLMV---AALAEPKRRVFRNIHRYVDTETRIIYRT 222
Query: 387 Y 387
Y
Sbjct: 223 Y 223
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 2e-06
Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 25/178 (14%)
Query: 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENV 102
+L G+ + G G TG L V ++ + + + +V + V
Sbjct: 115 AALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGV 174
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162
+ D T D D + + K ++ + +++ I +R
Sbjct: 175 NVITGDETVIDGL-EFDVL------MVAALAEPK--RRVFRNIHRYVDTETRIIYR---- 221
Query: 163 HQSGDSKRK--HNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKK 218
+ R + P + F+ + SG S++ +KC N K
Sbjct: 222 --TYTGMRAILYAPVSDDDIT----GFRRAGVVLPSGKVNNTSVLVFKCPDKGELNSK 273
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 81.2 bits (200), Expect = 3e-17
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLSINMISFALERAIGLKC 331
+ + + + ++DVGCG G MA + ++G DLS MI A G
Sbjct: 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD 86
Query: 332 S---VEFEVADC------TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTV 382
+ V F+++ + + D+I + + H D +S + L+ GT+
Sbjct: 87 TYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVEC-AHWFDFEKFQRSAYANLRKDGTI 145
Query: 383 LISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415
I Y EF + + + Y + Y
Sbjct: 146 AIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPY 178
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 4e-06
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALD----FIDSVIKKNEEVNG 97
+++ E K +++ G G G T ++A+ +I D I + E
Sbjct: 27 KMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPD 86
Query: 98 HFENVKFMCADV----TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
++NV F + + + +DM+ + + + EK L+ G
Sbjct: 87 TYKNVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF---DFEKFQRSAYANLRKDG 143
Query: 154 YI 155
I
Sbjct: 144 TI 145
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 3e-17
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 17/138 (12%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMA-DKFDVHVVGIDLSINMISFALERAIGLKC--- 331
VA L ++V+D+GCG G + D F + G+D+S + A ER L+
Sbjct: 22 VAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN 81
Query: 332 ---SVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISD 386
++ T + + +D + I H+ A + F++ +P V+++
Sbjct: 82 QWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVT- 139
Query: 387 YCKSFGTPSVEFSEYIKQ 404
TP++E++
Sbjct: 140 ------TPNIEYNVKFAN 151
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-07
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVI-------KKNEEVN 96
V++ L + V++ G G G L K + + +D + +
Sbjct: 21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR 80
Query: 97 GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+E ++ + +T D D ++ +L + + ++ + I
Sbjct: 81 NQWERLQLIQGALTYQD--KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-17
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVE 334
KL L+PG +LDVGCG G +K+DV+VVG+ LS N + + S
Sbjct: 58 GKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKR 117
Query: 335 FEVADCTKKTYPE--NSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI 384
+A + + D I S H + A F + L G +L+
Sbjct: 118 VLLAG-----WEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-17
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 18/121 (14%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVE 334
KL+L+PG +LD+GCG G + ++DV+V+G+ LS N + + E
Sbjct: 66 DKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKE 125
Query: 335 FEVADCTKKTYPE--NSFDVIYSRDTILHIQDK---------PALFKSFFKWLKPGGTVL 383
+ + E D I S H D FK F+ G +L
Sbjct: 126 VRIQG-----WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 180
Query: 384 I 384
+
Sbjct: 181 L 181
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-16
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFE 336
L L++GC G +A + ID+ I A +R + +
Sbjct: 45 LSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS-HISWA 102
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPAL---FKSFFKWLKPGGTVLISD 386
D + FD+I + + +++D + + K L PGG ++
Sbjct: 103 ATDIL-QFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 2e-14
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 5/128 (3%)
Query: 31 LDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIK 90
LD + ++ + + L LE G G FT +LA + +D + I
Sbjct: 29 LDDNPFERERHTQL-LRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIG 87
Query: 91 KNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE-VEKLAERMVKWL 149
+ + + ++ + D+ + D++ +L YL D + + MVK L
Sbjct: 88 RACQRTKRWSHISWAATDILQFST---AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKML 144
Query: 150 KVGGYIFF 157
GG++ F
Sbjct: 145 APGGHLVF 152
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 4e-16
Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLK 330
K + +L K G VLD+GCG GG G+D++ I+ A RA + +
Sbjct: 54 KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 113
Query: 331 CSVEFEVADCTKKTY-PENSFDVIYSRDTILHIQDKPALFKSFF----KWLKPGGTVLIS 385
V F D + FDVI S+ + + + L+PGG +++
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173
Query: 386 DYCKSF 391
+
Sbjct: 174 VPSRDV 179
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-06
Identities = 25/150 (16%), Positives = 45/150 (30%), Gaps = 11/150 (7%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEV---NGHFEN 101
L L G +VL+ G G G + + G +D + I
Sbjct: 56 CLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFK 115
Query: 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRE 159
V F D + D++ S + Y + + ++ + + L+ GGY
Sbjct: 116 VFFRAQDSYGRHM-DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI--- 171
Query: 160 SCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189
S D + FY ++
Sbjct: 172 -MTVPSRDVILERYKQGRMSNDFYKIELEK 200
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVE 334
KLDLKPG +LD+GCG G ++FDV+V+G+ LS N + + I S +
Sbjct: 84 DKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQ 143
Query: 335 FEVADCTKKTYPE--NSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI 384
+ + + D I S + H + FK F + G + +
Sbjct: 144 VLLQG-----WEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTV 192
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 29/157 (18%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
K ++VLD+GCG G ++ + +G+D++ +MI F + +D
Sbjct: 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK-------FNVVKSDA 90
Query: 341 TK--KTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSV 396
+ K+ P+ D + + H+ + L + +K ++I +P+
Sbjct: 91 IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE-------SPNP 143
Query: 397 EFSEYIKQRGYD------LHDVKSYGQMLKDAGFVDI 427
S Y Y ++ +L+ GF D+
Sbjct: 144 T-SLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 9/143 (6%)
Query: 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVN 96
+L K + + VL+ G G G F ++ I +D + +IK E
Sbjct: 26 ELVKARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCE--- 80
Query: 97 GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+ +D + + +D + + + +L + + +L +K YI
Sbjct: 81 ---GKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIV 137
Query: 157 FRE-SCFHQSGDSKRKHNPTHYR 178
+ +PTH +
Sbjct: 138 IESPNPTSLYSLINFYIDPTHKK 160
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 1e-15
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMA-DKFDVHVVGIDLSINMISFALERA------IG 328
VA L +KV+D+GCG G + DK + G+D+S +++ A +R
Sbjct: 22 VAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM 81
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISD 386
+ + + + + +D + I H+ + A K F++ +P V++S
Sbjct: 82 QRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT-VIVS- 139
Query: 387 YCKSFGTPSVEFSEYI 402
TP+ E++ +
Sbjct: 140 ------TPNKEYNFHY 149
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 23/179 (12%), Positives = 56/179 (31%), Gaps = 19/179 (10%)
Query: 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVI-------KKNE 93
V+++L K V++ G G G L K + +D SV+ K +
Sbjct: 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDR 77
Query: 94 EVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
+ + + + D D ++ +L + ++ + + ++ +
Sbjct: 78 LPEMQRKRISLFQSSLVYRD--KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQ 134
Query: 154 YIFF----RE--SCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVG 206
+ +E + + +H H E ++ + G S +G
Sbjct: 135 TVIVSTPNKEYNFHYGNLFEGNLRH-RDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQIG 192
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-15
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV 333
+ + +LDV CG G + +F G++LS +M++ A +R
Sbjct: 31 ADLVRSRTPEASSLLDVACGTGTHLEHFTKEF-GDTAGLELSEDMLTHARKRLPD----A 85
Query: 334 EFEVADCTKKTYPENSFDVIYSR-DTILHIQDKPAL---FKSFFKWLKPGGTVLI 384
D F + S ++ +++ L SF + L+PGG V++
Sbjct: 86 TLHQGDMRDFRLGR-KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVV 139
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 40 KEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG 97
E ++ L+ E ++L+ G G K+ G L+ + ++ +
Sbjct: 24 AAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARK--- 80
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIF 156
+ D+ L +V MFS + YL + +E+ + L+ GG +
Sbjct: 81 RLPDATLHQGDMRDFRLGRKFSAVVSMFS--SVGYLKTTEELGAAVASFAEHLEPGGVVV 138
Query: 157 F 157
Sbjct: 139 V 139
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 4e-15
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 9/118 (7%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA----IGL 329
A VL++ G+G F D V ++LS ++++ +R +
Sbjct: 73 REFATRTGPVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPADV 131
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSR-DTILHI--QDKPALFKSFFKWLKPGGTVLI 384
+ D + + F + +I + D+ L+ S + L+PGG L+
Sbjct: 132 RDRCTLVQGDMSAFALDK-RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 9e-10
Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 17/160 (10%)
Query: 5 SNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAG 64
++ GER + +++ E +A+ + + + +D E R P VLE AG
Sbjct: 39 ASVGERGVLCDFYDEGAADTYRDLI----QDADGTSEAREFATRTGPV--SGPVLELAAG 92
Query: 65 IGRFTGELAKKAGHVIALDF----IDSVIKKNEEVN-GHFENVKFMCADVTSPDL--TFS 117
+GR T V AL+ + + K+ E + + D+++ L F
Sbjct: 93 MGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRF- 151
Query: 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+V + + L + + L + + L+ GG
Sbjct: 152 -GTVVISSG--SINELDEADRRGLYASVREHLEPGGKFLL 188
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-15
Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 49/190 (25%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCT 341
LD+ CG G + KF + +DLS M+S A + D +
Sbjct: 36 LVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDIS 94
Query: 342 KKTYPENSFDVIYSR-DTILHI---QDKPALFKSFFKWLKPGGTVLI------------S 385
FD+I D+ +I D FK+ LK GG +
Sbjct: 95 NLNINR-KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLG 153
Query: 386 DYCKSFGTPSV----------------------------EFSEYIKQRGYDLHDVKSYGQ 417
+ ++ V F E ++R Y D++ +
Sbjct: 154 NNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIE---K 210
Query: 418 MLKDAGFVDI 427
LK +
Sbjct: 211 YLKHGQLNIL 220
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 12/125 (9%)
Query: 40 KEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDF----IDSVIKKNE 93
K+ ++ L+ G G T L K + A+D + K
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 94 EVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE-VEKLAERMVKWLKVG 152
+ C D+++ ++ D + Y+ D + ++K + + LK G
Sbjct: 81 SQG---LKPRLACQDISNLNINRKFDLITCCLD--STNYIIDSDDLKKYFKAVSNHLKEG 135
Query: 153 GYIFF 157
G F
Sbjct: 136 GVFIF 140
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 4e-15
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 20/164 (12%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS 332
+ + VLD+GCG G AD ++ G+D+S I A +R
Sbjct: 76 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQ 131
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392
V F VA + + + S D I P + + +KPGG V+ +
Sbjct: 132 VTFCVASSHRLPFSDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITA------- 177
Query: 393 TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
TP +K Y+ + + + GF + +
Sbjct: 178 TPGPRHLMELKGLIYNEVHLHAPHAE-QLEGFTLQQSAELCYPM 220
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 27/130 (20%), Positives = 43/130 (33%), Gaps = 16/130 (12%)
Query: 30 MLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDS 87
LD+ ++ L + VL+ G G G +T A LD
Sbjct: 61 FLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV 120
Query: 88 VIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK 147
IK + V F A L FS+ S+D + + K E + +
Sbjct: 121 AIKA---AAKRYPQVTFCVASSH--RLPFSDTSMDAIIRIYAP--------CKAEE-LAR 166
Query: 148 WLKVGGYIFF 157
+K GG++
Sbjct: 167 VVKPGGWVIT 176
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 4e-15
Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL 329
+ V + KVLD+GCG G Y++ V D + N I+F E
Sbjct: 107 AIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKE 165
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTI--LHIQDKPALFKSFFKWLKPGGTVLISDY 387
++ + D EN +D I S L+ + P++ K+ + GG LI
Sbjct: 166 NLNISTALYDINAANIQEN-YDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-13
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 6/153 (3%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK-NEEVNGHF 99
+V+ VL+ G G GR + L+ V + D ++ I NE
Sbjct: 107 AIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKEN 166
Query: 100 ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159
N+ D+ + ++ +++ D + S + M+L+ + V + + M + VGGY
Sbjct: 167 LNISTALYDINAANI---QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIV- 222
Query: 160 SCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192
+ D + + +K+ +
Sbjct: 223 -AAMSTDDVPCPLPFSFTFAENELKEYYKDWEF 254
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 9e-15
Identities = 33/173 (19%), Positives = 57/173 (32%), Gaps = 21/173 (12%)
Query: 273 KEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKF-------DVHVVGIDLSINMISFALE 324
+ ++ D K K+L +G G G D + K ++ ++ S I+ E
Sbjct: 41 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKE 100
Query: 325 RAIGLKC--SVEFEVADCTKKTY--------PENSFDVIYSRDTILHIQDKPALFKSFFK 374
+V+F T Y +D I+ + +++D PA K F
Sbjct: 101 LVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHS 160
Query: 375 WLKPGGTVLISDYCKSFGTPSV--EFSEYIKQ-RGYDLHDVKSYGQMLKDAGF 424
L +LI S G + ++ Q QML + G
Sbjct: 161 LLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNLGL 213
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 25/193 (12%), Positives = 56/193 (29%), Gaps = 28/193 (14%)
Query: 15 NYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGK-TVLEFGAGIGRFTGELA 73
++ HS + ++ P ++ + + + +L G G G ++
Sbjct: 20 RRFLNHSTE--------HQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQIL 71
Query: 74 KK-----AGHVIALDFID------SVIKKNEEVNGHFENVKFMCADVTSPDL------TF 116
K G I + ++ + K+ + ENVKF TS +
Sbjct: 72 SKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131
Query: 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTH 176
D + +L Y+ D + + L + D K +
Sbjct: 132 ELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSR 189
Query: 177 YREPRFYSKVFKE 189
+ + + +
Sbjct: 190 FPQDDLCQYITSD 202
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 1e-14
Identities = 39/179 (21%), Positives = 60/179 (33%), Gaps = 17/179 (9%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLK 330
V L G + L GCG G MA VVG+D+S + ++ A E
Sbjct: 57 VHLVDTSSLPLG-RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKA 114
Query: 331 CSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYC 388
F D P FD+I+ I + +PA KS ++ LKP G ++ Y
Sbjct: 115 EYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYP 173
Query: 389 KSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAI 447
+ + D+ + L GF + E+ +E
Sbjct: 174 ITDHVGGPPY-------KVDVSTFEEV---LVPIGFKAVSVEENPHAIPTRKGKEKLGR 222
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 9e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCADVTS 111
L G G G +A V+ LD +S + + + E F+ DV +
Sbjct: 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT 126
Query: 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+ D++F + + A+ M + LK G +
Sbjct: 127 WR---PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELI 168
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-14
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 10/115 (8%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV 333
+ + +LDV CG G ++AD F V G++LS +M++ A R
Sbjct: 41 AALVRRHSPKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNPD----A 95
Query: 334 EFEVADCTKKTYPENSFDVIYS-RDTILHI---QDKPALFKSFFKWLKPGGTVLI 384
D + F + +I H+ + A + F + P G V++
Sbjct: 96 VLHHGDMRDFSLGR-RFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVV 149
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 5e-07
Identities = 21/121 (17%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 40 KEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG 97
E ++ +L+ + + ++L+ G G LA G V L+ ++
Sbjct: 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARR--- 90
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIF 156
+ D+ L +V MFS + +L E++ ER + G +
Sbjct: 91 RNPDAVLHHGDMRDFSLGRRFSAVTCMFS--SIGHLAGQAELDAALERFAAHVLPDGVVV 148
Query: 157 F 157
Sbjct: 149 V 149
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 6e-14
Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 17/126 (13%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVE 334
+ L +VLDV CG G + ++ V +D S M+ +AL+ +
Sbjct: 49 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPA 107
Query: 335 FEVADCTKKTY--------PENSFDVIYS-RDTILHIQDKP-------ALFKSFFKWLKP 378
F+ + + + FD + ++ H+ D K+ ++P
Sbjct: 108 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 167
Query: 379 GGTVLI 384
GG ++I
Sbjct: 168 GGLLVI 173
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 9e-07
Identities = 21/140 (15%), Positives = 44/140 (31%), Gaps = 13/140 (9%)
Query: 31 LDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDF----ID 86
E + +L LL + VL+ G G + L ++ V ++D +
Sbjct: 34 YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLK 93
Query: 87 SVIKKNEEVNGHFENVKFMCADVTSPDL---TFSEDSVDMMFSNW-LLMYLSDK-----E 137
+K+ K++ + L + D D + +L D E
Sbjct: 94 YALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSE 153
Query: 138 VEKLAERMVKWLKVGGYIFF 157
+ + ++ GG +
Sbjct: 154 HRLALKNIASMVRPGGLLVI 173
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 2e-13
Identities = 28/176 (15%), Positives = 58/176 (32%), Gaps = 26/176 (14%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVE 334
+ + V D+GC G +V ++GID S M+ + +
Sbjct: 53 ERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIP 112
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILH--IQDKPALFKSFFKWLKPGGTVLISDYC---- 388
E+ + + ++ T+ +D+ AL ++ L P G +++S+
Sbjct: 113 VEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 172
Query: 389 -KSFGTPSVEFSEYIKQRGYDLHDVKS----------------YGQMLKDAGFVDI 427
K ++ + GY +V + LK+ GF +
Sbjct: 173 TKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQV 228
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 67.9 bits (165), Expect = 4e-12
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 19/134 (14%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMA--DKFDVHVVGIDLSINMISFALERAIGLK--- 330
+ + ++D GCG G + ++G+D+S ++ A +
Sbjct: 714 LKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE 773
Query: 331 ----CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI 384
S + + D+ + I H+++ + P +++
Sbjct: 774 ACNVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIV 832
Query: 385 SDYCKSFGTPSVEF 398
S TP+ EF
Sbjct: 833 S-------TPNYEF 839
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 7e-08
Identities = 18/173 (10%), Positives = 50/173 (28%), Gaps = 26/173 (15%)
Query: 7 HGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPE------------VLSLLPPYE 54
+ ++ + L ++L K ++ E L +
Sbjct: 663 GSDTVRIRSL-LSERPCLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRESS 721
Query: 55 GKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEE--------VNGHFENVK 103
T+++FG G G L +I +D + + + + ++
Sbjct: 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT 781
Query: 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+ D VD+ ++ ++ + + + E+++ I
Sbjct: 782 LYDGSILEFD--SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIV 832
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 6e-12
Identities = 28/163 (17%), Positives = 51/163 (31%), Gaps = 22/163 (13%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDF--YMADKFDVHVVGIDLSINMISFALERAIGLKCSVE 334
A +L++G GDF + + F+ + ++ S IS A R LK +
Sbjct: 36 AFTPFFRPGNLLELGS--FKGDFTSRLQEHFN-DITCVEASEEAISHAQGR---LKDGIT 89
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQD-KPALFKSFFKWLKPGGTVLI------SDY 387
+ + P +D I + HI D L + WL GG + + +
Sbjct: 90 YIHSRFEDAQLPR-RYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS 148
Query: 388 CKSFGTPSVEFSEYIKQRGYDLHD------VKSYGQMLKDAGF 424
+ + H + + + AG
Sbjct: 149 RQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 191
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 10/146 (6%)
Query: 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGE 71
I +NY E + D+ V + P + +LE G+ G FT
Sbjct: 4 ISRNYDQEIKDT--AGHKYAYNFDFDVMHPFM--VRAFTPFFRPGNLLELGSFKGDFTSR 59
Query: 72 LAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131
L + + ++ + I + + ++ + L D + +L
Sbjct: 60 LQEHFNDITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQL---PRRYDNIVLTHVLE 114
Query: 132 YLSDKEVEKLAERMVKWLKVGGYIFF 157
++ D V L WL GG +F
Sbjct: 115 HIDDP-VALLKRINDDWLAEGGRLFL 139
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 4e-11
Identities = 22/124 (17%), Positives = 37/124 (29%), Gaps = 14/124 (11%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSV 333
K+ +K G V+D CG G ++A + V G D+ I+ ++ L V
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 334 EFEVAD-CTKKTYPENSFDVIYSRDTILHIQDKPAL---------FKSFFKWLKPGGTVL 383
Y + + L D + L GG +
Sbjct: 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
Query: 384 ISDY 387
+ Y
Sbjct: 137 VVIY 140
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 1e-08
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVI---KKNEEVNGHFENVKFMCA 107
EG TV++ G G T LA G V D D I K + V +
Sbjct: 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD 81
Query: 108 DVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLA------ERMVKWLKVGGYI 155
+ D +MF+ L + + ++ L GG I
Sbjct: 82 GHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGII 135
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 1e-10
Identities = 31/154 (20%), Positives = 54/154 (35%), Gaps = 19/154 (12%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK------- 330
+ K VLD+GCG GG +V D++ + +R +K
Sbjct: 29 RQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEY 88
Query: 331 -CSVEFEVADCTKKTY------PENSFDVIYSRDTILHIQDKPALFKSFFK----WLKPG 379
S EF AD +K+ P+ FD+ + + + + L PG
Sbjct: 89 IFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148
Query: 380 GTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVK 413
G + + SF + + G +++ VK
Sbjct: 149 GYFIGTTPN-SFELIRRLEASETESFGNEIYTVK 181
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 4e-04
Identities = 31/189 (16%), Positives = 67/189 (35%), Gaps = 17/189 (8%)
Query: 52 PYEGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIK---------KNEEVNGHFEN 101
TVL+ G G G + K + ++ D D +K KN + + +
Sbjct: 32 KKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFS 91
Query: 102 VKFMCADVTSPDL----TFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYI 155
+F+ AD + L + D+ ++ Y S ++ + + + L GGY
Sbjct: 92 AEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGY- 150
Query: 156 FFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVK 215
F + + + + T Y+ F++ G ++ +L G + ++
Sbjct: 151 FIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLV 210
Query: 216 NKKNQNQIC 224
N++
Sbjct: 211 YFPLLNEMA 219
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 38/166 (22%)
Query: 273 KEFVAKLDLKPGQKV-LDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
L +P V D GCG +A V DL+
Sbjct: 56 DRIARDLRQRPASLVVADFGCGDC----RLASSIRNPVHCFDLA--------------SL 97
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V D + + S DV L + + + LKPGG + +++ F
Sbjct: 98 DPRVTVCDMAQVPLEDESVDVAVFC-LSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSRF 156
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFV 437
DV+++ + + GF + + F
Sbjct: 157 ------------------EDVRTFLRAVTKLGFKIVSKDLTNSHFF 184
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFI---DSVIKKNEEV 95
E R ++ L P + ++ G G G T ELA + V A+D S + N +
Sbjct: 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR 77
Query: 96 NGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
+G +NV M D P+ +D+ S E++++ + LK GG I
Sbjct: 78 HGLGDNVTLMEGDA--PEALCKIPDIDIAVVG-----GSGGELQEILRIIKDKLKPGGRI 130
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 7e-06
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 263 FVSTGGIET-TKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSI 316
F+ + T V + +DVGCG GG +A V ID +
Sbjct: 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELA-GRVRRVYAIDRNP 65
Query: 317 NMISFALERA--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFK 374
IS GL +V D + D+ + + + +
Sbjct: 66 EAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL---QEILRIIKD 122
Query: 375 WLKPGGTVLIS 385
LKPGG ++++
Sbjct: 123 KLKPGGRIIVT 133
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 37/178 (20%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--C 331
+ + L+PG +L+VG G G Y+ + ++ + + A++
Sbjct: 103 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 162
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
+V +D + +D + I I D + +KPG Y +F
Sbjct: 163 NVRTSRSDIADF-ISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATF--YLPNF 214
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
+ L +G + V++++R + E
Sbjct: 215 ------------------DQSEKTVLSLSASGMHHLET-------VELMKRRILVREG 247
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 4e-05
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 16/142 (11%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDSVI---KKNEEVNGHF 99
++ G +LE G G G + + G + ++ + + N
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 161
Query: 100 ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159
NV+ +D+ S+ D + ++ + +++ +K G F
Sbjct: 162 GNVRTSRSDIADF---ISDQMYDAVIADIP-------DPWNHVQKIASMMKPGSVATFYL 211
Query: 160 SCFHQSGDSKRKHNPTHYREPR 181
F QS + + +
Sbjct: 212 PNFDQSEKTVLSLSASGMHHLE 233
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 50/350 (14%), Positives = 97/350 (27%), Gaps = 78/350 (22%)
Query: 50 LPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID-SVIKKNEEVNGHFENVKFMCAD 108
+E +L G L A F V+ + N F V
Sbjct: 15 SDDFEQSRILFAGDLQDDLPARLDTAASRAHTQQFHHWQVLSRQMGDNARFSLV------ 68
Query: 109 VTSPDLTFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG 166
+ D D++ + Y + E + ++ L VG IF G
Sbjct: 69 -ATADDVADCDTL--------IYYWPKNKPEAQFQLMNLLSLLPVGTDIFV-------VG 112
Query: 167 DSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWI 226
+++ R ++ + + ++ +C + + +K
Sbjct: 113 ENRSGV--------RSAEQMLADYAPLNKVDSA-------RRCGLYFGRLEKQPVFDAEK 157
Query: 227 WQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIET-TKEFVAKLDLKPGQ 285
+ S + + G S G++ ++ ++ L
Sbjct: 158 FWGEYSVDGLTVKTL-------------------PGVFSRDGLDVGSQLLLSTLTPHTKG 198
Query: 286 KVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344
KVLDVGCG G A + + D+S + + E ++ +
Sbjct: 199 KVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE- 257
Query: 345 YPENSFDVIYS----------RDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ FD+I S L + + L GG + I
Sbjct: 258 -VKGRFDMIISNPPFHDGMQTSLDAAQ-----TLIRGAVRHLNSGGELRI 301
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 2e-08
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 271 TTKEFVAKL---DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA---LE 324
++ + ++ G KV+D+ G+G + K + I+ + A +
Sbjct: 78 SSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIP 136
Query: 325 RAIGLKCSVEFEVADCTK--KTYPENSFDVIY 354
+ V D + D IY
Sbjct: 137 LLLNEGKDVNILTGDFKEYLPLIKTFHPDYIY 168
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 5e-05
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKN-EEVNGHFENVKFMCAD 108
EG V++ G+G L KA I ++ D + N + ++V + D
Sbjct: 92 REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGD 151
Query: 109 VTSPDLTFSEDSVDMMFSN 127
D ++ +
Sbjct: 152 FKEYLPLIKTFHPDYIYVD 170
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 53/361 (14%), Positives = 102/361 (28%), Gaps = 76/361 (21%)
Query: 45 EVL--SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSV-IKKNEEVNGHFEN 101
E L L VL G + LA+ + I +I + ++N +NG E+
Sbjct: 27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDES 86
Query: 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRE 159
V L+ + + +E+ + K + I
Sbjct: 87 SVKFLDSTADYPQQP--GVV--------LIKVPKTLALLEQQLRALRKVVTSDTRIIAGA 136
Query: 160 SCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKN 219
K + T E + KV A + L+
Sbjct: 137 ---------KARDIHTSTLE--LFEKVLGPTTTTLAWKKA---RLI-------------- 168
Query: 220 QNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKL 279
C + + + L+ + ++ + VF + G + F+ L
Sbjct: 169 ---NCTFNEPQLADAPQTVSWKLEGTDWTIHN---HANVFSRTGLDIG----ARFFMQHL 218
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERA--------IGLK 330
+++D+GCG G + DK VV +D S A+ +
Sbjct: 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES----PMAVASSRLNVETNMPEAL 274
Query: 331 CSVEFEVADCTKKTYPENSFDVIYS-------RDTILHIQDKPALFKSFFKWLKPGGTVL 383
EF + + F+ + ++ + +F + LK G +
Sbjct: 275 DRCEFMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAWE--MFHHARRCLKINGELY 331
Query: 384 I 384
I
Sbjct: 332 I 332
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-08
Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 12/118 (10%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS-VEFEVAD 339
L V+D G G ++A V D+ + +R L E +
Sbjct: 20 LDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDG 78
Query: 340 -CTKKTYPENSFDVIYSRDTILHIQDKP---------ALFKSFFKWLKPGGTVLISDY 387
Y L DK + L+ GG + I Y
Sbjct: 79 HENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-08
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 12/113 (10%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCADVT 110
+ V++ G G T LA + V A D + + + G EN + +
Sbjct: 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLG-IENTELILDG-H 79
Query: 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLA-------ERMVKWLKVGGYIF 156
+ + + N + +DK V E+++ L+VGG +
Sbjct: 80 ENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 3e-08
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
+ G++VLD+G G G +A + VVG++ + + + + +D
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLA-RMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSD 288
Query: 340 CTKKTYPENSFDVIYS-------RDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ E FD+I + IL + A L+PGG +
Sbjct: 289 VDEALTEEARFDIIVTNPPFHVGGAVILDVAQ--AFVNVAAARLRPGGVFFL 338
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 4e-08
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 10/127 (7%)
Query: 271 TTKEFVAK------LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE 324
T E +A+ V+D CG+GG A V+ ID+ I+ A
Sbjct: 60 VTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIALARN 118
Query: 325 RAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTV 382
A G+ +EF D DV++ A + P G
Sbjct: 119 NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFE 177
Query: 383 LISDYCK 389
+ K
Sbjct: 178 IFRLSKK 184
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 3e-06
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCADVT 110
+ V++ G+G T + A VIA+D I + N EV G + ++F+C D
Sbjct: 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFL 137
Query: 111 SPDLTFSEDSV 121
D V
Sbjct: 138 LLASFLKADVV 148
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 23/154 (14%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 263 FVSTGGIETTKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSIN 317
F G I TK + A L + G+ + D+G G G + I+ +
Sbjct: 32 FAHDGQI--TKSPMRALTLAALAPRRGELLWDIGGG-SGSVSVEWCLAGGRAITIEPRAD 88
Query: 318 MISFALERAIGLKCSVEFEV--ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKW 375
I + S + + + AL+ ++W
Sbjct: 89 RIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAV-----FIGGGGSQALYDRLWEW 143
Query: 376 LKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409
L PG ++ + + + + ++ + G L
Sbjct: 144 LAPGTRIVAN--AVTLESET-LLTQLHARHGGQL 174
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDS---VIKKNEEV 95
K R L+ L P G+ + + G G G + E G I ++ I+KN +
Sbjct: 40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDT 99
Query: 96 NGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
G ++ + +P + +F + + L +R+ +WL G
Sbjct: 100 YGLSPRMRAVQGT--APAALADLPLPEAVF-------IGGGGSQALYDRLWEWLAPGT 148
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 29/176 (16%), Positives = 51/176 (28%), Gaps = 27/176 (15%)
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AI 327
+ V+D+ G G + + + DL A + A
Sbjct: 167 MVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP-TTRDAARKTIHAH 225
Query: 328 GLKCSVEFEVADCTKKTYPE-NSFDVI-YSRDTILHI---QDKPALFKSFFKWLKPGGTV 382
L VEF + E + DV+ + LH ++ + +KPGG +
Sbjct: 226 DLGGRVEFFEKNLLDARNFEGGAADVVMLND--CLHYFDAREAREVIGHAAGLVKPGGAL 283
Query: 383 LISDYCKSFGTPSVEFSEYIKQRGYDL-----------HDVKSYGQMLKDAGFVDI 427
LI T + + + L H +++DAG
Sbjct: 284 LILTM-----TMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVG 334
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 6e-08
Identities = 27/190 (14%), Positives = 61/190 (32%), Gaps = 16/190 (8%)
Query: 208 KCIGAYVKNKKNQNQICWIWQKV-RSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVST 266
+ I + + K Q + + QQ ++ + YE + T
Sbjct: 98 RAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGET 157
Query: 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALER 325
+ + + ++ + +D+G G+G +A + H G++ + +A
Sbjct: 158 S-FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 216
Query: 326 AIGLK----------CSVEFEVADCTKKTYPEN--SFDVIYSRDTILHIQDKPALFKSFF 373
+ E D + + E + VI+ + + L K F
Sbjct: 217 DREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQL-KERF 275
Query: 374 KWLKPGGTVL 383
+K GG ++
Sbjct: 276 ANMKEGGRIV 285
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-08
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 20/130 (15%)
Query: 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLK----- 330
LD +KVL + G G D ++ +V D + I+ ER L
Sbjct: 42 TFLDDSNKRKVLAIDFG-NGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKT 100
Query: 331 ------CSVEFEVADCT----KKTYPENSFDVIYSRDTI---LHIQDKPALFKSFFKWLK 377
E +D ++ + F++I + I H + + + +
Sbjct: 101 KYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA 160
Query: 378 PGGTVLISDY 387
GG VLI+
Sbjct: 161 SGGKVLITTM 170
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 8e-08
Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 13/150 (8%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKC 331
VA + PG +++ G G G ++A+ + VV ++ + A E G
Sbjct: 86 VAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDD 145
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V ++ D + E + D + IL + + + K LKPGG + Y
Sbjct: 146 RVTIKLKDIYEGI-EEENVDHV-----ILDLPQPERVVEHAAKALKPGGFFVA--YTPCS 197
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421
+ E +++ ++ ++ D
Sbjct: 198 -NQVMRLHEKLREFKDYFMKPRTINVLVFD 226
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Length = 336 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 22/180 (12%)
Query: 243 DNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMA 302
+K NG + + V F + + + + K + V+D+ G+G F +A
Sbjct: 158 TLTIHKENGYRLWVDIAKVYF--SPRLGGERARIMKK-VSLNDVVVDMFAGVGP--FSIA 212
Query: 303 DKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360
K + ID++ + I + L+ + ++D +V + +
Sbjct: 213 CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV---------REVDVKGNRV- 262
Query: 361 HIQDKPALFKSF----FKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416
I + P F ++ GG + K F F + + VKSY
Sbjct: 263 -IMNLPKFAHKFIDKALDIVEEGGVIHYYTIGKDFDKAIKLFEKKCDCEVLEKRIVKSYA 321
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 29/177 (16%)
Query: 271 TTKEFVAKLDLKP--GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER-- 325
+ ++ KVLD+ G +A + + G+D + +++ A E
Sbjct: 151 PAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR 209
Query: 326 AIGLKCSVEFEVADCTKKTYPENSFDVI-YSRDTILHI---QDKPALFKSFFKWLKPGGT 381
G+ + Y +D++ LH L + L G
Sbjct: 210 IQGVASRYHTIAGSAFEVDYGN-DYDLVLLPN--FLHHFDVATCEQLLRKIKTALAVEGK 266
Query: 382 VLISDYCKSFGTPSVEFSEYIKQRGYDL-----------HDVKSYGQMLKDAGFVDI 427
V++ D+ P+ + + L + Y M +AGF
Sbjct: 267 VIVFDF-----IPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHS 318
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 18/123 (14%)
Query: 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC 331
TK V + + +LD+GCG G +AD+ D++ I A E
Sbjct: 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNL 99
Query: 332 S---VEFEVADCTKKTYPENSFDVIYS-------RDTILHIQDKPALFKSFFKWLKPGGT 381
+ +D + + ++ I + ++ + I + + LK G
Sbjct: 100 DNYDIRVVHSDLYENV-KDRKYNKIITNPPIRAGKEVLHRI------IEEGKELLKDNGE 152
Query: 382 VLI 384
+ +
Sbjct: 153 IWV 155
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 20/174 (11%), Positives = 55/174 (31%), Gaps = 20/174 (11%)
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AI 327
+ + + + +++LD+G G +V V +DL + ++ +
Sbjct: 167 SFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP-QQLEMMRKQTAGL 225
Query: 328 GLKCSVEFEVADCTKKTYPE-NSFDVI-YSRDTILHI---QDKPALFKSFFKWLKPGGTV 382
+ A+ + P FD + S+ L ++ ++ + + V
Sbjct: 226 SGSERIHGHGANLLDRDVPFPTGFDAVWMSQ--FLDCFSEEEVISILTRVAQSIGKDSKV 283
Query: 383 LISDY------CKSFGTPSVEFSEY---IKQRGYDLHDVKSYGQMLKDAGFVDI 427
I + ++ + S Y + + + +++AG
Sbjct: 284 YIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVE 337
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 1e-06
Identities = 18/128 (14%), Positives = 42/128 (32%), Gaps = 17/128 (13%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---GL 329
+++ + L++ PG +VL CG +++ + HVVG +LS + +
Sbjct: 12 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHI 70
Query: 330 KCSVEFEVADCTKKTY-----------PENSFDVIYSRDTILHIQD--KPALFKSFFKWL 376
+F+V Y R ++ + + + +
Sbjct: 71 TSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM 130
Query: 377 KPGGTVLI 384
+ L+
Sbjct: 131 PQACSGLL 138
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 1e-06
Identities = 25/137 (18%), Positives = 51/137 (37%), Gaps = 10/137 (7%)
Query: 47 LSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDSVIKKNEEVNGHFENVK 103
L LP EG +L G G ++ G + ++F V++ V N+
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIF 129
Query: 104 FMCADVTSPDLTFSE-DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162
+ D P+ + VD ++++ + + +L+ GGY+ +
Sbjct: 130 PILGDARFPEKYRHLVEGVDGLYADVAQPE----QAAIVVRNARFFLRDGGYMLM--AIK 183
Query: 163 HQSGDSKRKHNPTHYRE 179
+S D + + + RE
Sbjct: 184 ARSIDVTTEPSEVYKRE 200
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADK--FDVHVVGIDLSINMISFALERAIGLKCSV 333
+ +L +K G ++L +G G +M+D + G++ + ++ L + ++
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NI 128
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKW----LKPGGTVLIS 385
+ D PE ++ D + +P + L+ GG +L++
Sbjct: 129 FPILGDARF---PEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA 181
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE--RAIGLKCSVEFEVAD 339
K++D+ G G ++ + +VG+++ + A L+ +E D
Sbjct: 48 IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD 107
Query: 340 CTK--KTYPENSFDVIYS 355
K P+ D++
Sbjct: 108 LKKITDLIPKERADIVTC 125
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 24/130 (18%)
Query: 51 PPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVI----KKNEEVNGHFENVKFM 105
P +++ +G G L+ + ++ ++ I + K++ N + ++ +
Sbjct: 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVE-IQERLADMAKRSVAYNQLEDQIEII 104
Query: 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEV------------------EKLAERMVK 147
D+ ++ D++ N D + E
Sbjct: 105 EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAAS 164
Query: 148 WLKVGGYIFF 157
LK GG F
Sbjct: 165 LLKQGGKANF 174
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 1e-06
Identities = 27/137 (19%), Positives = 53/137 (38%), Gaps = 12/137 (8%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVE 334
+ + +K K+L +G G ++AD D V I+ + ++ L+ + ++
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE-NII 125
Query: 335 FEVADCTKKTYPENSFDVIYSRDTIL----HIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
+ D K P+ +++ D I L K+ +LK GG +I+ +S
Sbjct: 126 PILGDANK---PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARS 182
Query: 391 ---FGTPSVEFSEYIKQ 404
P F E +
Sbjct: 183 IDVTKDPKEIFKEQKEI 199
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Length = 200 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-06
Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 20/157 (12%)
Query: 272 TKEFVAKLD---------LKPGQKVLDVGCGIGGGDF-YMADKFDVHVVGIDLSINMISF 321
T E VA L+ +K +LD GCG + + D+ I+F
Sbjct: 29 TNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAF 88
Query: 322 ALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGT 381
LK ++++ + Y ++DV++ + ++ + F +
Sbjct: 89 LSSIIGKLKTTIKYRFLNKESDVYKG-TYDVVFLLKMLPVLKQQDVNILDFLQLFH-TQN 146
Query: 382 VLISDYCKSFG--------TPSVEFSEYIKQRGYDLH 410
+IS KS + F + K L
Sbjct: 147 FVISFPIKSLSGKEKGMEENYQLWFESFTKGWIKILD 183
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 4e-06
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 5/137 (3%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERA-IGLKCSVEFEV 337
+ G+ VLD+GC +G +A K+ +VG+D+ +I A + L +
Sbjct: 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPP 102
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE 397
E R A P + +D
Sbjct: 103 QTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGP---IAAPQVPLDGADTSVFPNNVVFV 159
Query: 398 FSEYIKQRGYDLHDVKS 414
Y+ R +
Sbjct: 160 TGNYVLDRDDLVEAQTP 176
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 43.8 bits (102), Expect = 7e-05
Identities = 19/150 (12%), Positives = 36/150 (24%), Gaps = 11/150 (7%)
Query: 39 DKEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVI----- 89
+ L +L P G+ VL+ G +G T +A K ++ LD +I
Sbjct: 29 NPSCEDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQ 88
Query: 90 --KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK 147
+ + + F L ++
Sbjct: 89 NIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGAD 148
Query: 148 WLKVGGYIFFRESCFHQSGDSKRKHNPTHY 177
+ F + D + Y
Sbjct: 149 TSVFPNNVVFVTGNYVLDRDDLVEAQTPEY 178
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-06
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 29/181 (16%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEF 335
+A + GQ V V + ++ + L+ G + V
Sbjct: 5 MADFGISAGQFVAVVWDKSSPVE----------------ALKGLVDKLQALTGNEGRVSV 48
Query: 336 EVAD-CTKKTYPENSFDVIYSRDTILHIQ-DKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
E + + E+SFD+I S + + L+PGG + +
Sbjct: 49 ENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFL--------- 99
Query: 394 PSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDA 453
E E + L +G V++ R + +Q + + + D
Sbjct: 100 --KEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDN 157
Query: 454 F 454
Sbjct: 158 L 158
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 5e-06
Identities = 30/158 (18%), Positives = 51/158 (32%), Gaps = 13/158 (8%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV 333
+A G +VL+VG G+ + + I+ + + + A V
Sbjct: 51 HALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV 110
Query: 334 EFEVADCTK--KTYPENSFDVIY-----SRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
T P+ FD I + H + F+ LKPGG +
Sbjct: 111 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT--- 167
Query: 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424
YC + S+Y + ++ L +AGF
Sbjct: 168 YCNLTSWGELMKSKYSDI---TIMFEETQVPALLEAGF 202
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 29/161 (18%)
Query: 263 FVSTGGIETTKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSI 316
+ G + TK+ V + L KP + + D+G G G V ++S
Sbjct: 2 NATDGQL--TKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISE 59
Query: 317 NMISFALERAIGLKCS----VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSF 372
L AI L S V+ + DVI+ I P +F +
Sbjct: 60 ERRERILSNAINLGVSDRIAVQQGAPRAFDDVPD--NPDVIF----IGGGLTAPGVFAAA 113
Query: 373 FKWLKPGGTVLISDYCKSFGTPSVE----FSEYIKQRGYDL 409
+K L GG ++ + +VE KQ G +
Sbjct: 114 WKRLPVGGRLVAN-------AVTVESEQMLWALRKQFGGTI 147
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-05
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 14/122 (11%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFID---SVIKKNE 93
K+ R +S L P +T+ + G G G E + + + + I N
Sbjct: 10 KQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNA 69
Query: 94 EVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
G + + D+ D++F + K L VGG
Sbjct: 70 INLG-VSDRIAVQQGA-PRAFDDVPDNPDVIFIG------GGLTAPGVFAAAWKRLPVGG 121
Query: 154 YI 155
+
Sbjct: 122 RL 123
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 5e-06
Identities = 28/193 (14%), Positives = 67/193 (34%), Gaps = 18/193 (9%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI 327
++ +K+ + ++ + + +D+G G G + +A + +GID + ++ I
Sbjct: 10 VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69
Query: 328 ------GLKCSVEFEVADCTKKTYP----ENSFDVIYSRDTILH--IQDKPALFKSFFKW 375
GL +V F +A + +S +++ T+L I+ + +
Sbjct: 70 KKPSKGGLS-NVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADL 128
Query: 376 LKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF----VDIIAED 431
K + + + Y L ++GF V + +
Sbjct: 129 AKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNE 188
Query: 432 RTEQFVQVLQREL 444
+QF + + L
Sbjct: 189 YVKQFNSLWAKRL 201
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 6e-05
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 10/114 (8%)
Query: 55 GKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDSVIKK------NEEVNGHFENVKFMC 106
+ ++ G G GR +LA + I +D + + + G NV F+
Sbjct: 25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVI 84
Query: 107 ADVTSPDLTFSE--DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
A S DS+ ++F L+ K + + K + F
Sbjct: 85 AAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 60/515 (11%), Positives = 130/515 (25%), Gaps = 195/515 (37%)
Query: 16 YWM----EHSANLTVEAMMLDSKASDLDKE--ERPEVLSLLPPYEGKTVLEFGAGIGRFT 69
+W+ +S +E ML +D R + S + L +
Sbjct: 185 FWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELR 235
Query: 70 GELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMC-----------ADVTSPDLT--- 115
L K + L + +V +N + F C D S T
Sbjct: 236 -RLLKSKPYENCLLVLLNV--QNAKAWNAFN---LSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 116 --------FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD 167
+ D V + +L + L RE
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDC-----RPQDLP---------------REVL------ 323
Query: 168 SKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICWI- 226
NP LS+ I +++ W
Sbjct: 324 ---TTNP-------------------------RRLSI-----IAESIRDGLAT----WDN 346
Query: 227 WQKVRSQN-DRGFQQFLDNVQ-------YKLNGILRY-----ERVFGV---GFVSTGGIE 270
W+ V + L+ ++ + + + + + + +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINM-ISFALERAIGL 329
+ ++ K + + ++L + + +AL R+I
Sbjct: 407 VVNKLHKYSLVEKQPK---------------ESTISIPSIYLELKVKLENEYALHRSI-- 449
Query: 330 KCSVE---FEVADCTKKTYPENSFDVIYSRDTILHI---------QDKPALFKSF---FK 374
V+ + P YS HI ++ LF+ F+
Sbjct: 450 ---VDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 375 WLK------------PGGTV-LISD---YCKSFGTPS-VEFSEYIKQRGYDLHD-VKSYG 416
+L+ G + + Y K + + ++ + + D +
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVN----AILDFLPKIE 556
Query: 417 QMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDK 451
+ L + + D++ + L E +AI ++
Sbjct: 557 ENLICSKYTDLL------RI--ALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 71/505 (14%), Positives = 144/505 (28%), Gaps = 187/505 (37%)
Query: 82 LDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKL 141
D S++ K E +++ + S D + +F W L+ ++ V+K
Sbjct: 39 QDMPKSILSKEE-----IDHI------IMSKD---AVSGTLRLF--WTLLSKQEEMVQKF 82
Query: 142 AERMVK----WLKVGGYIFFRESCFHQSGDSKR---KHNPTHYREPRFYSKVF-----KE 189
E +++ +L + S ++ + + Y + + ++K
Sbjct: 83 VEEVLRINYKFLMSP----IKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPY 137
Query: 190 CQIQDA-----------------SGNSFELSLVGYKCIGAYVKNKKNQNQICWI------ 226
+++ A SG + + C+ V+ K + +I W+
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKT---WVALDVCLSYKVQCKMD-FKIFWLNLKNCN 193
Query: 227 --------WQKVRSQNDRGFQQFLDN----------VQYKLNGIL---RYER-------- 257
QK+ Q D + D+ +Q +L +L YE
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 258 -------VFGVG---FVST---------GGIETTKEFVAKLD--LKPGQ------KVLDV 290
F + ++T TT + L P + K LD
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 291 GCG----------------IGGG--------DFYMADKFDVHVVGIDLSINMISFALERA 326
I D + D I+ S+N++ A R
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 327 IGLKCSV------------------------EFEVADCTKKT----YPENSFDVIYS--R 356
+ + SV V K + P+ S I S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE---FSEYIKQRGYDLHDVK 413
+ + ++++ AL +S + + P F +I G+ H +K
Sbjct: 434 ELKVKLENEYALHRSIVDHYN-----IPKTFDSDDLIPPYLDQYFYSHI---GH--H-LK 482
Query: 414 SYGQMLKDAGFVDIIAEDRTEQFVQ 438
+ + F + + R F++
Sbjct: 483 NIEHPERMTLFRMVFLDFR---FLE 504
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 6e-04
Identities = 51/331 (15%), Positives = 98/331 (29%), Gaps = 112/331 (33%)
Query: 225 WIWQKVRSQNDRGFQQFLDNVQY--KLNGILRYERVFGVGFVSTGGIETTKEFVAKL-DL 281
++ ++++ Q + Y + + + +VF VS ++ + L +L
Sbjct: 93 FLMSPIKTEQR---QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKLRQALLEL 147
Query: 282 KPGQKVL---DVGCG-----------------IGGGDFYM-------------------- 301
+P + VL +G G + F++
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207
Query: 302 -ADKFDV----HVVGIDLSINMISFALERAIGLKCSVEFE----VAD--CTKKTYPENSF 350
D H I L I+ I L R + K +E V K + N+F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAW--NAF 262
Query: 351 DV-----IYSRDTILHIQDKPALFKSFFKWLKPGGT--VLISDYCKSFGTPSVE--FSEY 401
++ + +R K +L T + + + + V+ +Y
Sbjct: 263 NLSCKILLTTRF------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 402 IKQRGYDL-HDVKSYGQMLKDAGFVDIIAE------DRTEQFVQVLQRELDAIEKDKDAF 454
+ R DL +V + + IIAE + + V +L I
Sbjct: 311 LDCRPQDLPREVLTTNPRR-----LSIIAESIRDGLATWDNWKHVNCDKLTTI------- 358
Query: 455 IKDFSEVFCFFHLDCLSDTVDSSLFSVLKCF 485
I+ L+ L +F L F
Sbjct: 359 IESS--------LNVLEPAEYRKMFDRLSVF 381
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-06
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 13/89 (14%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMI-----SFALERAIGLKCSV 333
++ D+G G G +A + V + S M S L +
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 334 EFEVAD-------CTKKTYPENSFDVIYS 355
E AD + P+ F +
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 8e-06
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI----GL 329
V + D+ PG +VL+ G G G + V+ + + A
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
+ V+D P+ S D L + + + + L GG +++
Sbjct: 152 PDNWRLVVSDLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMV 201
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 9e-06
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID---SVIKKNEEV 95
KEE R + L + V++ G G G T E+AK+ V A+D++D V K+N
Sbjct: 20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAK 79
Query: 96 NGHFENVKFMCAD 108
+N + +
Sbjct: 80 FN-IKNCQIIKGR 91
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 263 FVSTGGIETTKEFV-----AKLDLKPGQKVLDVGCGIG 295
F+ G+ TKE + KL+L V+DVGCG G
Sbjct: 10 FIRREGVPITKEEIRAVSIGKLNLNKDDVVVDVGCGSG 47
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Length = 281 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 1e-05
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 23/169 (13%)
Query: 271 TTKEFVAKLD---------LKPGQKVLDVGCGIGGGDF-YMADKFDVHVVGIDLSINMIS 320
+T+E + LD L + D+ CG+ +M + + D+ ++
Sbjct: 111 STRERLPHLDEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVG 170
Query: 321 FALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI--LHIQDKPALFKSFFKWLKP 378
F E L VAD + E DV T+ L Q + + ++ P
Sbjct: 171 FVDEALTRLNVPHRTNVADLLEDRLDE-PADVTLLLKTLPCLETQQRGSGWEVIDIVNSP 229
Query: 379 GGTVLISDYCKSFG--------TPSVEFSEYIKQRGYDLHDVKSYGQML 419
++++ KS G S F ++R + ++ +++
Sbjct: 230 N--IVVTFPTKSLGQRSKGMFQNYSQSFESQARERSCRIQRLEIGNELI 276
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 23/173 (13%)
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALER--AI 327
+ + + L +K++DVG GIG M F ++ ++L I E
Sbjct: 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLP-GAIDLVNENAAEK 236
Query: 328 GLKCSVEFEVADCTKKTYPENSFDVI-YSRDTILHI---QDKPALFKSFFKWLKPGGTVL 383
G+ + D K++YPE D + + R IL+ Q + K F ++ GG +L
Sbjct: 237 GVADRMRGIAVDIYKESYPEA--DAVLFCR--ILYSANEQLSTIMCKKAFDAMRSGGRLL 292
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDL---------HDVKSYGQMLKDAGFVDI 427
I D P +Y+ + Y ++L+ G+ D+
Sbjct: 293 ILDM--VIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDV 343
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Length = 207 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 22/156 (14%), Positives = 54/156 (34%), Gaps = 9/156 (5%)
Query: 262 GFVSTGGIETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMI 319
+ + G + ++A D++ G+ V D+G G G + V+ +++ +
Sbjct: 27 QYRTPGNAASELLWLAYSLGDIE-GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV 85
Query: 320 SFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPG 379
+E K + + D ++ + D++ + Q K A K +
Sbjct: 86 DVLIENLGEFKGKFKVFIGDVSE---FNSRVDIVIM-NPPFGSQRKHADRPFLLKAFEIS 141
Query: 380 GTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415
V K +E ++ + G+ + +
Sbjct: 142 DVVYSIHLAKPEVRRFIE--KFSWEHGFVVTHRLTT 175
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* Length = 416 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERA 326
++F+A P ++++GC D M V +G + S + A R
Sbjct: 94 MLARDFLATELTGPDPFIVEIGCN----DGIMLRTIQEAGVRHLGFEPSSGV--AAKARE 147
Query: 327 IGLKCSVEF---EVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383
G++ +F AD ++T +VIY+ +T+ HI ++ + L P G +
Sbjct: 148 KGIRVRTDFFEKATADDVRRTE--GPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV 205
Query: 384 I 384
Sbjct: 206 F 206
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENV 102
L L VL+ G+G FT LA +A V+ ++ + +++ ++N +NG +NV
Sbjct: 278 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG-LQNV 336
Query: 103 KFMCADVT 110
F ++
Sbjct: 337 TFYHENLE 344
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 284 GQKVLDVGCGIGGGDFYMADK-FDVHVVGIDLSINMISFALE--RAIGLKCSVEFEVADC 340
G VLD CG G +A + + ++GI+ + A A G+ ++F D
Sbjct: 218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA 277
Query: 341 TKKTYPENSFDVIYS------RDTILHIQDKPALFKSFFKWLK---PGGTVLISDYCKSF 391
T+ + +S D S + I P L+ FF L V I+
Sbjct: 278 TQLSQYVDSVDFAISNLPYGLK--IGKKSMIPDLYMKFFNELAKVLEKRGVFIT------ 329
Query: 392 GTPSVEFSEYIKQRG 406
T E I + G
Sbjct: 330 -TEKKAIEEAIAENG 343
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 30/138 (21%)
Query: 259 FGVGFVSTGGIETTK---EFVAKLDLKPGQKVLDVGCG-----IGGGDFYMADKFDVHVV 310
FG TG ETT+ + +A+ +PG KVLD+G G I A+K +
Sbjct: 99 FG-----TGHHETTRLALKALARHL-RPGDKVLDLGTGSGVLAIA------AEKLGGKAL 146
Query: 311 GIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYS---RDTILHIQDKPA 367
G+D+ ++ A A F + P FD++ + + A
Sbjct: 147 GVDIDPMVLPQAEANAKRNGVRPRFLEGS-LEAALPFGPFDLLVANLYAELHA------A 199
Query: 368 LFKSFFKWLKPGGTVLIS 385
L + + L PGG L++
Sbjct: 200 LAPRYREALVPGGRALLT 217
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 25/140 (17%), Positives = 50/140 (35%), Gaps = 38/140 (27%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLS---INMISFALERAIGLKCSVE 334
L + G+ +LD+ GG ++ + + VV +D+ ++ + L+R L
Sbjct: 242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR---LGMKAT 298
Query: 335 FEVADCTK--KTYPENSFDVI-------------------YSR-----DTILHIQDKPAL 368
+ D + E FD I + R + +Q + +
Sbjct: 299 VKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSE--I 356
Query: 369 FKSFFKWLKPGGTVLISDYC 388
+ + LK GGT++ Y
Sbjct: 357 LDAIWPHLKTGGTLV---YA 373
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 5e-05
Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 28/118 (23%)
Query: 276 VAK----LDLKPGQKVLDVGCGIGGGDFYMA---DKFDVHVVGIDLSINMISFALER--A 326
VA+ L+L P +VL++G G G Y HV ++ + A R
Sbjct: 66 VARMTELLELTPQSRVLEIGTGSG----YQTAILAHLVQHVCSVERIKGLQWQARRRLKN 121
Query: 327 IGLKCSVEFEVADCTKKTYPENS-FDVIY---SRDTILHIQDKPALFKSFFKWLKPGG 380
+ L +V D + + + FD I + I P + L GG
Sbjct: 122 LDLH-NVSTRHGDGW-QGWQARAPFDAIIVTAAPPEI------P---TALMTQLDEGG 168
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 6e-05
Identities = 29/187 (15%), Positives = 61/187 (32%), Gaps = 16/187 (8%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI 327
E + +L + VLDVG G G + +A + VV +D + + +A
Sbjct: 13 QEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAA 72
Query: 328 GLKCS-----VEFEVADCTKKTYPENS----FDVIYSRDTILH--IQDKPALFKSFFKWL 376
+ + A + P S V+ ++L + P + +
Sbjct: 73 AKPAKGGLPNLLYLWATA--ERLPPLSGVGELHVLMPWGSLLRGVLGSSPEMLRGMAAVC 130
Query: 377 KPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
+PG + L++ ++ E E+ + + +AG+ +
Sbjct: 131 RPGASFLVALNLHAWRPSVPEVGEHPE--PTPDSADEWLAPRYAEAGWKLADCRYLEPEE 188
Query: 437 VQVLQRE 443
V L+
Sbjct: 189 VAGLETS 195
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 20/141 (14%)
Query: 30 MLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDS 87
++ + + E ++ S VL+ G G G+ ++A++ V+ALD S
Sbjct: 7 VVGKRVQEFSDAEFEQLRSQ----YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKS 62
Query: 88 VIKK------NEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL----LMYLSDKE 137
++K + G N+ ++ A + ++ W + S E
Sbjct: 63 RMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHVLMP-WGSLLRGVLGSSPE 121
Query: 138 VEKLAERMVKWLKVGGYIFFR 158
+ + + + G
Sbjct: 122 MLRGMAAV---CRPGASFLVA 139
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 7e-05
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 37/178 (20%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMAD--KFDVHVVGIDLSINMISFALE--RAIGLKC 331
LD+K G +++D G G G +A V + A GL
Sbjct: 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 164
Query: 332 SVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V +V D ++ + E D + L + D ++ LK GG C
Sbjct: 165 RVTIKVRDISEG-FDEKDVDAL-----FLDVPDPWNYIDKCWEALKGGGRFAT--VC--- 213
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
P+ + ++ L++ F+ I + L R + +
Sbjct: 214 --PTTNQVQETLKK-------------LQELPFIRIEV-------WESLFRPYKPVPE 249
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 8e-05
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 10/121 (8%)
Query: 272 TKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADK-FDVHVVGIDLSINMISFALER 325
TK+ V +KL L+ + D+G G ++ + + ++ + + F +
Sbjct: 24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83
Query: 326 AIGLKCS-VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
V A + D ++ + + + + + LK G +++
Sbjct: 84 LKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGGML---EEIIDAVDRRLKSEGVIVL 140
Query: 385 S 385
+
Sbjct: 141 N 141
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 40 KEE-RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDS---VIKKNE 93
K+E R LS L + + + GAG + E + G + AL+ I+ N
Sbjct: 25 KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNL 84
Query: 94 EVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGG 153
+ NV + A P+ D +F S +E++ + + + LK G
Sbjct: 85 KKFV-ARNVTLVEAFA--PEGLDDLPDPDRVFIG-----GSGGMLEEIIDAVDRRLKSEG 136
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 33/172 (19%), Positives = 55/172 (31%), Gaps = 29/172 (16%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKL-DLKPGQKVLDVGCGIGG--GDFYMADKFDVHVV 310
R+ + G ++ + + +L D +PG +VLD G G + V
Sbjct: 177 RFPKAALRGSLT----PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVY 232
Query: 311 GIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVI-----Y-----SRDT 358
DL + A E A+ GL + F AD D I + ++
Sbjct: 233 AGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEG 291
Query: 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410
+ H+ + L PGG V + T + G+ L
Sbjct: 292 LFHLY--WDFLRGALALLPPGGRVALL-------TLRPALLKRALPPGFALR 334
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 35/136 (25%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLS---INMISFALERAIGLKCSV 333
LD KPG+ V+D+ GG ++A+ + D+ + + ++R G+K V
Sbjct: 255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM-GIKI-V 312
Query: 334 EFEVADCTK--KTYPENSFDVI-------------------YSR-----DTILHIQDKPA 367
+ V D K + E D + + + + +Q +
Sbjct: 313 KPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRE-- 370
Query: 368 LFKSFFKWLKPGGTVL 383
L +S + +KPGG +L
Sbjct: 371 LLESAARLVKPGGRLL 386
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 276 VAK----LDLKPGQKVLDVGCGIGGGDFYMA---DKFDVHVVGIDLSINMISFALERAIG 328
LDL GQKVL++G GIG Y + VV ++++ M ++A +
Sbjct: 59 GIFMLDELDLHKGQKVLEIGTGIG----YYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114
Query: 329 LKCSVEFEVADCTKKTYPENS-FDVIY 354
+++ + D T Y E +D +
Sbjct: 115 YN-NIKLILGDGT-LGYEEEKPYDRVV 139
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 29/149 (19%), Positives = 44/149 (29%), Gaps = 23/149 (15%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS--VEFEVAD 339
KP + V+D+ GIG +A V+ I+ F +E K + D
Sbjct: 124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD 183
Query: 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSF----FKWLKPGGTVLISDYCKS---FG 392
+ EN D I + F K G + +
Sbjct: 184 N-RDFPGENIADRI--------LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPR 234
Query: 393 TPSVEFSEYIKQRGYDL-----HDVKSYG 416
P F K+ GYD+ +K Y
Sbjct: 235 EPFETFKRITKEYGYDVEKLNELKIKRYA 263
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 26/118 (22%), Positives = 42/118 (35%), Gaps = 30/118 (25%)
Query: 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFID----SVIKKNEEVNGHFENVKFMCA 107
VLE G G G T +L +KA V+A + +D + + K + ++ +
Sbjct: 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACE-LDPRLVAELHKRVQGTPVASKLQVLVG 84
Query: 108 DV-------------------TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV 146
DV +SP F F +LM+ +E A R+V
Sbjct: 85 DVLKTDLPFFDTCVANLPYQISSP-FVFKLLLHRPFFRCAILMF--QREF---ALRLV 136
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 26/116 (22%)
Query: 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKN-EEVNGHFENVKFMCADVT 110
E TV E G G G T +LAK + V +++ +DS + E V + D+
Sbjct: 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIE-LDSHLFNLSSEKLKLNTRVTLIHQDIL 85
Query: 111 SPDLTFSEDSVDMMFSNW-------LLMYLSD------------KEVEKLAERMVK 147
+ + N ++ + + +R +
Sbjct: 86 QFQFPNKQRY--KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGF---YKRTLD 136
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Length = 253 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 23/167 (13%)
Query: 271 TTKEFVAKLD--------LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA 322
+TKE +A+LD + ++VLD+ CG+ + ++ V G D+ +
Sbjct: 85 STKERLAELDTLYDFIFSAETPRRVLDIACGLN--PLALYERGIASVWGCDIHQGLGDVI 142
Query: 323 LERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGG 380
A F + D P + D+ + + + + P
Sbjct: 143 TPFAREKDWDFTFALQDVLCAP-PAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTP-- 199
Query: 381 TVLISDYCKSFG--------TPSVEFSEYIKQRGYDLHDVKSYGQML 419
+ +S +S G + F + +++
Sbjct: 200 RMAVSFPTRSLGGRGKGMEANYAAWFEGGLPAEFEIEDKKTIGTELI 246
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Length = 332 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 19/169 (11%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE--RAIGLK-CSVEFEV 337
KVL++ G A V +D S I +A E GL+ + +
Sbjct: 151 ADRPLKVLNLFGYTGVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC 209
Query: 338 ADCTK--KTYPE--NSFDVI------YSR---DTILHIQ-DKPALFKSFFKWLKPGGTVL 383
D K + +++D+I + R + + P + + L P L
Sbjct: 210 EDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 269
Query: 384 ISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432
+ S E +++ V + G+++ +D R
Sbjct: 270 VLTAY-SIRASFYSMHELMRETMRGAGGVVASGELVIREAGLDGKTPGR 317
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADK--FDVHVVGIDLSINMISFALERAIGLKCSV 333
+ ++ G KVL +G G +++D + G++ S ++ L A ++
Sbjct: 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP-NI 127
Query: 334 EFEVADCT---KKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
+AD + DV+Y D Q A+ + +LK G +L+ +S
Sbjct: 128 FPLLADARFPQSYKSVVENVDVLYV-DIAQPDQTDIAI-YNAKFFLKVNGDMLLVIKARS 185
Query: 391 ---FGTPSVEFSEYIKQ 404
P + +++
Sbjct: 186 IDVTKDPKEIYKTEVEK 202
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 22/108 (20%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEV--NGHFENVKFMCADV 109
+ K VL+ G G G A KAG V+ +D + + + + + N + + + +
Sbjct: 64 KDKVVLDVGCGTG-ILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI 122
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIF 156
++ + VD++ S W+ +L + ++ + K+L GG ++
Sbjct: 123 E--EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 23/113 (20%)
Query: 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111
+ VLE G G G T ELAK A V ++ S+ ++ + N++ + D
Sbjct: 48 LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALK 107
Query: 112 PDLTFSEDSVDMMFSN------------WLLMYLSD------KEVEKLAERMV 146
D ++ + + +N + E A+RMV
Sbjct: 108 VD--LNKLDFNKVVANLPYQISSPITFKLIKRGFDLAVLMYQYEF---AKRMV 155
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Length = 235 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 17/90 (18%)
Query: 276 VAK----LDLKPGQKVLDVGCGIGGGDFY----MADKFDVHVVGIDLSINMISFALER-- 325
VA +LKPG +L+VG G G + +++ V I+ ++ FA
Sbjct: 80 VAIMLEIANLKPGMNILEVGTGSG----WNAALISEIVKTDVYTIERIPELVEFAKRNLE 135
Query: 326 AIGLKCSVEFEVADCTKKTYPENS-FDVIY 354
G+K +V + D + K +P + +DVI
Sbjct: 136 RAGVK-NVHVILGDGS-KGFPPKAPYDVII 163
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 234 NDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFV----AKLD-------LK 282
N ++F+ Y+ ++ +R ++ G T V AKL ++
Sbjct: 26 NQLDAKEFM---AYRRRFVVEVDRNEAREALAKGKT-NTGHAVSRGTAKLAWIDERGGVE 81
Query: 283 PGQKVLDVGCGIGGGDFYMADKFDVH-VVGIDLSIN 317
V+D+GCG G +Y A + +V V L +
Sbjct: 82 LKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTS 117
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Length = 425 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCADV 109
EG+ +L+ +G+G F LAK+ +V D + I ++N E+N + + +D
Sbjct: 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN-VDAEFEVASDR 347
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Length = 265 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 234 NDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIET---TKEFVAKLD-------LKP 283
N ++F +YK G++ +R ++ G +T AKL ++
Sbjct: 18 NAMTKEEFT---RYKRAGVMETDRKEARDYLKRGDGKTGLSVSRGTAKLAWMEERGYVEL 74
Query: 284 GQKVLDVGCGIGGGDFYMADKFDVH-VVGIDLSIN 317
+V+D+GCG GG +Y A + V V L +
Sbjct: 75 TGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVG 109
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 8e-04
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 18/114 (15%)
Query: 53 YEGKTVLEFGAGIGRFTGEL---AKKAG--HVIALDFIDSVIKKNEEV--NGHFENVKFM 105
++ K VL+ G+G TG L A KAG VI ++ + V N V +
Sbjct: 65 FKDKVVLDVGSG----TGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTII 120
Query: 106 CADVTSPDLTFSEDSVDMMFSNWL---LMYLSDKEVEKLAERMVKWLKVGGYIF 156
V ++ + VD++ S W+ L Y S A KWL G IF
Sbjct: 121 KGKVE--EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARD--KWLAPDGLIF 170
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 8e-04
Identities = 32/203 (15%), Positives = 67/203 (33%), Gaps = 42/203 (20%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLK 330
E VA + G +LDVG + ++ + + ++ A++ GLK
Sbjct: 7 ELVASF-VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLK 65
Query: 331 CSVEFEVADCTKKTYPENSFDVIYS----RDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
++ +A+ + VI I I + L +++
Sbjct: 66 EKIQVRLANGLAAFEETDQVSVITIAGMGGRLIARI------LEEGLGKLANVERLILQ- 118
Query: 387 YCKSFGTPSV---EFSEYIKQRGYDLHD--------------VKSYGQM---LKDAGFVD 426
P+ + +++ G+ + V GQM D F
Sbjct: 119 -------PNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQMKLSASDVRFGP 171
Query: 427 IIAEDRTEQFVQVLQRELDAIEK 449
++++ + FVQ Q+E + +E
Sbjct: 172 FLSKEVSPVFVQKWQKEAEKLEF 194
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Length = 369 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCAD 108
+LE G G F+ LA+ V+A + + + N N +NV+ +
Sbjct: 213 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANH-IDNVQIIRMA 269
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.96 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.94 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.93 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.93 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.92 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.91 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.91 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.9 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.89 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.88 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.88 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.87 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.87 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.86 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.86 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.86 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.85 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.85 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.85 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.85 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.85 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.85 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.85 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.85 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.85 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.84 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.84 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.84 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.84 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.84 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.83 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.83 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.83 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.82 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.82 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.82 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.82 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.82 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.81 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.81 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.81 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.81 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.81 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.81 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.81 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.81 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.81 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.8 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.8 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.8 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.8 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.8 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.8 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.8 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.79 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.79 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.79 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.79 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.79 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.79 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.79 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.78 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.78 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.78 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.78 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.78 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.78 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.78 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.78 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.78 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.78 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.77 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.77 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.77 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.77 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.77 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.77 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.76 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.76 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.76 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.76 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.76 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.76 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.76 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.76 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.76 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.76 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.76 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.76 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.76 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.75 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.75 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.75 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.75 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.75 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.75 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.75 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.74 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.74 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.74 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.74 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.74 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.74 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.74 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.73 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.73 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.73 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.73 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.73 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.72 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.72 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.72 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.72 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.72 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.72 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.72 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.72 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.72 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.72 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.71 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.71 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.71 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.71 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.71 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.71 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.7 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.7 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.7 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.7 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.69 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.69 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.69 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.69 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.69 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.68 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.68 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.68 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.68 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.68 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.68 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.67 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.67 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.67 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.67 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.66 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.66 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.66 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.65 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.65 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.65 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.65 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.65 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.65 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.65 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.64 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.64 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.64 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.64 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.64 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.63 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.63 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.63 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.63 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.63 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.63 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.63 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.63 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.63 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.62 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.62 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.61 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.61 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.61 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.61 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.61 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.61 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.61 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.61 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.61 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.61 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.61 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.61 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.6 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.6 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.6 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.6 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.6 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.6 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.6 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.6 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.6 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.6 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.59 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.59 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.59 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.59 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.59 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.59 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.58 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.58 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.58 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.58 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.58 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.58 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.58 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.58 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.58 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.57 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.57 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.57 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.57 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.57 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.56 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.56 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.56 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.56 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.56 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.56 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.56 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.56 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.56 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.56 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.55 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.55 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.55 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.55 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.55 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.55 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.55 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.54 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.54 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.54 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.54 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.54 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.54 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.54 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.53 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.53 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.53 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.53 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.53 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.53 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.53 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.53 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.53 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.52 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.52 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.52 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.52 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.52 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.52 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.52 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.52 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.52 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.52 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.51 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.51 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.51 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.51 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.51 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.51 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.51 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.5 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.5 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.5 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.5 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.5 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.5 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.5 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.5 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.5 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.5 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.49 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.49 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.49 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.49 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.49 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.48 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.48 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.48 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.48 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.48 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.47 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.47 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.47 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.47 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.47 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.47 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.47 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.47 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.47 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.46 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.46 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.46 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.46 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.46 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.46 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.46 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.46 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.46 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.46 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.45 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.45 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.45 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.44 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.43 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.43 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.43 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.43 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.43 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.43 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.42 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.42 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.42 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.42 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.42 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.42 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.42 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.42 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.42 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.42 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.41 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.41 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.41 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.41 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.41 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.4 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.4 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.4 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.4 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.39 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.39 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.39 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.39 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.38 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.38 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.38 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.38 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.38 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.38 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.38 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.37 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.37 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.37 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.37 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.36 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.36 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.36 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.36 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.36 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.36 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.36 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.36 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.36 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.35 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.35 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.35 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.35 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.35 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.34 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.34 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.33 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.33 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.33 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.33 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.33 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.33 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.33 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.32 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.32 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.32 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.31 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.31 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.31 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.31 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.31 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.3 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.3 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.3 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.3 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.3 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.3 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.29 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.29 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.28 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.28 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.28 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.28 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.28 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.28 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.28 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.28 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.27 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.27 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.27 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.27 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.27 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.27 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.26 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.25 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.25 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.25 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.25 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.24 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.23 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.23 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.23 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.23 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.23 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.22 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.22 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.22 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.22 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.22 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.21 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.21 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.21 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.21 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.21 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.21 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.2 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.19 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.18 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.18 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.17 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.17 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.17 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.16 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.16 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.15 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.15 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.13 |
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-29 Score=232.57 Aligned_cols=229 Identities=40% Similarity=0.746 Sum_probs=204.9
Q ss_pred hhHHHhhhhhhccccchhHHHHHhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCC
Q 043471 236 RGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLS 315 (485)
Q Consensus 236 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s 315 (485)
+.|+.|++...|...++..|+..++..+..+.....+..+++.+.+.++.+|||||||+|.++..+++.++.+|+|+|+|
T Consensus 8 ~~f~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s 87 (266)
T 3ujc_A 8 NSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC 87 (266)
T ss_dssp -CHHHHHHHTTTSHHHHHHHHHHHCTTCCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC
T ss_pred hhHHHHHhccccchhhHHHHHHHhCCCccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCC
Confidence 45888998888888889999999999999999999999999999999999999999999999999999777899999999
Q ss_pred HHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecccCC-C
Q 043471 316 INMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSF-G 392 (485)
Q Consensus 316 ~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~ 392 (485)
+.+++.|+++.... .++++.++|+.++++++++||+|++..+++|+ +++..++++++++|||||++++.++.... .
T Consensus 88 ~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 166 (266)
T 3ujc_A 88 SNIVNMANERVSGN-NKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE 166 (266)
T ss_dssp HHHHHHHHHTCCSC-TTEEEEECCTTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG
T ss_pred HHHHHHHHHHhhcC-CCeEEEECccccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc
Confidence 99999999987654 68999999999999888999999999999999 79999999999999999999999876654 2
Q ss_pred CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhh
Q 043471 393 TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFF 465 (485)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (485)
.....+..+..+.+..+++.+++.++++++||+++.+...+.++..++..|.+.+...++++...++++..+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (266)
T 3ujc_A 167 NWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKLFSEKKFIS 239 (266)
T ss_dssp GCCHHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHH
T ss_pred cchHHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHH
Confidence 3344556666667777889999999999999999999999999999999999999999999988887776665
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-26 Score=216.98 Aligned_cols=198 Identities=22% Similarity=0.272 Sum_probs=168.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++.+.++++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.|+++... +..++++..+|+.++ +
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~ 135 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---D 135 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---C
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---C
Confidence 35667888888999999999999999999999998778999999999999999998764 445799999999876 6
Q ss_pred CCccEEEEcccccccCCH---------HHHHHHHHhcCCCCcEEEEEecccCCCCCC---------------hhHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQDK---------PALFKSFFKWLKPGGTVLISDYCKSFGTPS---------------VEFSEYIK 403 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---------------~~~~~~~~ 403 (485)
++||+|++..+++|++++ ..+++++.++|||||++++.++........ .....++.
T Consensus 136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (302)
T 3hem_A 136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIF 215 (302)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTC
T ss_pred CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcC
Confidence 899999999999999765 799999999999999999998765432100 11222333
Q ss_pred hcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 404 QRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
+.+ .+++.+++.++++++||+++.++..+.+|..++..|.++++.+++++.+.+++++.++|...|.
T Consensus 216 p~~-~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~~w~~yl~ 282 (302)
T 3hem_A 216 PGG-RLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIALKGQETCDIYMHYLR 282 (302)
T ss_dssp TTC-CCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHHHHHTHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCC-CCCCHHHHHHHHHhCCcEEEEEEeCchhHHHHHHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHH
Confidence 332 5678999999999999999999999999999999999999999999999999999999887664
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=204.06 Aligned_cols=201 Identities=26% Similarity=0.395 Sum_probs=167.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++.. ++..++++..+|+.++|+++
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 4567788888888999999999999999999998778899999999999999999876 34457999999999999888
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---hHHHHHH-hcCCCCCCHHHHHHHHHhCC
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---EFSEYIK-QRGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~l~~aG 423 (485)
++||+|++..+++|++++..+++++.++|||||++++.++......... .+..+.. ..+...++.+++.++++++|
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 207 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAE 207 (273)
T ss_dssp TCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTT
T ss_pred CCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999987654432221 1122211 12346789999999999999
Q ss_pred CeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhc
Q 043471 424 FVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCL 470 (485)
Q Consensus 424 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (485)
|+++.++..+.++..++..|.+++...+..+...++++..+.+...+
T Consensus 208 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (273)
T 3bus_A 208 LVVTSTVDISAQARPSLVKTAEAFENARSQVEPFMGAEGLDRMIATF 254 (273)
T ss_dssp CEEEEEEECHHHHTTHHHHHHHHHHHTHHHHHHHHCHHHHHHHHHHH
T ss_pred CeEEEEEECcHhHHHHHHHHHHHHHHhHHHHHhhcCHHHHHHHHHHH
Confidence 99999999999999999999999988877777777776555544433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=204.99 Aligned_cols=199 Identities=23% Similarity=0.288 Sum_probs=164.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++.. ...++++..+|+.+++
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--- 127 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--- 127 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---
Confidence 35567778888889999999999999999999976688999999999999999998864 3358999999998765
Q ss_pred CCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecccCCCC-------CCh----hHHHHHHh---cCCCCCC
Q 043471 348 NSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGT-------PSV----EFSEYIKQ---RGYDLHD 411 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-------~~~----~~~~~~~~---~~~~~~~ 411 (485)
++||+|++..+++|+ +++..+++++.++|||||++++.++...... +.. .+..++.. .+..+++
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 789999999999999 6899999999999999999999987653211 100 11111111 1235679
Q ss_pred HHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 412 VKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+++.++++++||+++.+...+.+|..++..|.+++...++++.+.++++..+.|...|.
T Consensus 208 ~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (287)
T 1kpg_A 208 IPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYERYMKYLT 267 (287)
T ss_dssp HHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEEEEeCcHhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988887777665543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-24 Score=201.57 Aligned_cols=167 Identities=25% Similarity=0.379 Sum_probs=140.1
Q ss_pred HHHHHHHHHc----CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC
Q 043471 270 ETTKEFVAKL----DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK 343 (485)
Q Consensus 270 ~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~ 343 (485)
.....+++.+ .+.++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.|+++.. +...++++..+|+.++
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 144 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI 144 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence 4567788888 788899999999999999999998877899999999999999998874 4456899999999999
Q ss_pred CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcC-CCCCCHHHHHHHHHhC
Q 043471 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRG-YDLHDVKSYGQMLKDA 422 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a 422 (485)
|+++++||+|++..+++|++++..++++++++|||||++++.++..........+........ ..+.+...+.++|+++
T Consensus 145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 224 (297)
T 2o57_A 145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKEC 224 (297)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHT
T ss_pred CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHHHHC
Confidence 998899999999999999999999999999999999999999876654443333333333222 2456899999999999
Q ss_pred CCeEEEEeecchHH
Q 043471 423 GFVDIIAEDRTEQF 436 (485)
Q Consensus 423 Gf~~~~~~~~~~~~ 436 (485)
||+++.+...+...
T Consensus 225 Gf~~~~~~~~~~~~ 238 (297)
T 2o57_A 225 GLVTLRTFSRPDSL 238 (297)
T ss_dssp TEEEEEEEECHHHH
T ss_pred CCeEEEEEECchhh
Confidence 99999998876543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=193.10 Aligned_cols=182 Identities=19% Similarity=0.301 Sum_probs=151.5
Q ss_pred CCchHHHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCC
Q 043471 266 TGGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTK 342 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~ 342 (485)
+........+++.+. +.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++. ++..+++++++|+.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 334466677777776 77889999999999999999999855699999999999999999875 344579999999999
Q ss_pred CCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhC
Q 043471 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 422 (485)
+++++++||+|++..+++|+ ++..+++++.++|||||++++.+...............+......+.+..++.++|+++
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 186 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKA 186 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHC
Confidence 99888999999999999999 89999999999999999999998765544444444444433333567899999999999
Q ss_pred CCeEEEEeecc-----hHHHHHHHHHHHHHH
Q 043471 423 GFVDIIAEDRT-----EQFVQVLQRELDAIE 448 (485)
Q Consensus 423 Gf~~~~~~~~~-----~~~~~~~~~~~~~~~ 448 (485)
||+++++.... .+|..++..|...+.
T Consensus 187 Gf~~v~~~~~~~~~w~~~~~~~~~~~~~~~~ 217 (267)
T 3kkz_A 187 GYLPVATFILPENCWTDHYFTPKVAAQKIFL 217 (267)
T ss_dssp TEEEEEEEECCGGGTTTTTHHHHHHHHHHHH
T ss_pred CCEEEEEEECCHhHHHHHHHHHHHHHHHHHH
Confidence 99999988766 677888888887773
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=203.07 Aligned_cols=199 Identities=23% Similarity=0.292 Sum_probs=164.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+.+.++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++.... ..++++..+|+.+++
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---
Confidence 455677888888899999999999999999999877789999999999999999988643 356999999998764
Q ss_pred CCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC-----------hhHHHHHHh---cCCCCCC
Q 043471 348 NSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS-----------VEFSEYIKQ---RGYDLHD 411 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~---~~~~~~~ 411 (485)
++||+|++..+++|+ +++..+++++.++|||||++++.++........ ..+..++.. .+..+++
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 789999999999999 588999999999999999999998765432110 001111111 1235679
Q ss_pred HHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 412 VKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+++.++++++||+++.++..+.+|..++..|..++...++++...+++.+.+.|...+.
T Consensus 234 ~~~~~~~l~~aGf~~~~~~~~~~~y~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 293 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLR 293 (318)
T ss_dssp HHHHHHHHHHTTCBCCCCEECHHHHHHHHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEEecchhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888888887765543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-22 Score=185.03 Aligned_cols=167 Identities=22% Similarity=0.337 Sum_probs=139.6
Q ss_pred CCchHHHHHHHHHc-CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCC
Q 043471 266 TGGIETTKEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTK 342 (485)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~ 342 (485)
+........+++.+ .++++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|+++... ...+++++++|+.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 34456677777777 5778889999999999999999998766999999999999999998763 44569999999999
Q ss_pred CCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhC
Q 043471 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 422 (485)
+++++++||+|++..+++|+ ++..+++++.++|||||++++.+...............+......+.+.+++.++|+++
T Consensus 108 ~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 186 (257)
T 3f4k_A 108 LPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKMERA 186 (257)
T ss_dssp CSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHHHHT
T ss_pred CCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHC
Confidence 99888999999999999999 89999999999999999999998765544444444444444334567899999999999
Q ss_pred CCeEEEEeecc
Q 043471 423 GFVDIIAEDRT 433 (485)
Q Consensus 423 Gf~~~~~~~~~ 433 (485)
||+++.....+
T Consensus 187 Gf~~v~~~~~~ 197 (257)
T 3f4k_A 187 GYTPTAHFILP 197 (257)
T ss_dssp TEEEEEEEECC
T ss_pred CCeEEEEEECC
Confidence 99999887655
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-22 Score=190.45 Aligned_cols=173 Identities=21% Similarity=0.303 Sum_probs=143.1
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+. +.++.+|||+|||+|.++..++++++.+|+|+|+|+.+++.|++++.. +..++++..+|+.+++++++
T Consensus 105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 184 (312)
T 3vc1_A 105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG 184 (312)
T ss_dssp HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence 456777776 788999999999999999999988778999999999999999998764 34579999999999998889
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCC--CChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT--PSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+||+|++..+++|+ ++..+++++.++|||||++++.++...... ...............+++.+++.++|+++||++
T Consensus 185 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~ 263 (312)
T 3vc1_A 185 AVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVP 263 (312)
T ss_dssp CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEE
T ss_pred CEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEE
Confidence 99999999999999 699999999999999999999987655432 222222222223335778999999999999999
Q ss_pred EEEeecchHHHHHHHHHHHHHH
Q 043471 427 IIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
+.++..+. .++..|..++.
T Consensus 264 ~~~~~~~~---~~~~~w~~~~~ 282 (312)
T 3vc1_A 264 HTIVDLTP---DTLPYWELRAT 282 (312)
T ss_dssp EEEEECHH---HHHHHHHHHTT
T ss_pred EEEEeCCH---HHHHHHHHHHH
Confidence 99998874 46677777765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=183.14 Aligned_cols=169 Identities=21% Similarity=0.178 Sum_probs=138.7
Q ss_pred ccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCC
Q 043471 264 VSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCT 341 (485)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~ 341 (485)
..+.....+..+++.+.+.++.+|||||||+|.++..+++.++.+++|+|+|+.+++.|+++.. ++..++++.++|+.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 96 (256)
T 1nkv_A 17 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 96 (256)
T ss_dssp SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence 3344456778888999999999999999999999999998878899999999999999999875 34457999999999
Q ss_pred CCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH-hcCCCCCCHHHHHHHHH
Q 043471 342 KKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK-QRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 342 ~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ 420 (485)
++++ +++||+|++..+++|++++..++++++++|||||++++.+...........+...+. .....+.+..++.++|+
T Consensus 97 ~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (256)
T 1nkv_A 97 GYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFD 175 (256)
T ss_dssp TCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHH
T ss_pred hCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHHH
Confidence 9887 789999999999999999999999999999999999999865544333332222221 11225678999999999
Q ss_pred hCCCeEEEEeecc
Q 043471 421 DAGFVDIIAEDRT 433 (485)
Q Consensus 421 ~aGf~~~~~~~~~ 433 (485)
++||+++.+....
T Consensus 176 ~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 176 DLGYDVVEMVLAD 188 (256)
T ss_dssp TTTBCCCEEEECC
T ss_pred HCCCeeEEEEeCC
Confidence 9999998776544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=183.71 Aligned_cols=162 Identities=20% Similarity=0.230 Sum_probs=130.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~ 349 (485)
.+..+++.+...++.+|||||||+|.++..+++.. .+|+|+|+|+.|++.|+++....+ .++.+..+|+.++|+++++
T Consensus 25 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~ 103 (260)
T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 103 (260)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCC
Confidence 35567777778889999999999999999999884 599999999999999999875332 3799999999999998899
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH----HHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE----YIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
||+|++..+++|++|+..+|++++++|||||++++.+...........+.. ...+.+...++..++.++|+++||+
T Consensus 104 fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 183 (260)
T 1vl5_A 104 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFE 183 (260)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCE
T ss_pred EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCe
Confidence 999999999999999999999999999999999998765443211111111 1112234667899999999999999
Q ss_pred EEEEeecc
Q 043471 426 DIIAEDRT 433 (485)
Q Consensus 426 ~~~~~~~~ 433 (485)
++.+....
T Consensus 184 ~~~~~~~~ 191 (260)
T 1vl5_A 184 LEELHCFH 191 (260)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEee
Confidence 98776543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=181.64 Aligned_cols=156 Identities=18% Similarity=0.304 Sum_probs=120.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~ 346 (485)
+..+++.. ++++.+|||+|||+|..+..+++++ +++|+|+|+|+.|++.|++++.. ...+++++++|+.++|+
T Consensus 60 i~~l~~~~-~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~- 137 (261)
T 4gek_A 60 IGMLAERF-VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI- 137 (261)
T ss_dssp HHHHHHHH-CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-
T ss_pred HHHHHHHh-CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-
Confidence 33444443 7889999999999999999999875 57999999999999999999764 34589999999999876
Q ss_pred CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-----HHHHHHh---------------
Q 043471 347 ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIKQ--------------- 404 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~--------------- 404 (485)
++||+|+++.+++|++ ++..+|++++++|||||++++.+........... ...+...
T Consensus 138 -~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l 216 (261)
T 4gek_A 138 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSML 216 (261)
T ss_dssp -CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHH
T ss_pred -cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence 4699999999999996 4567899999999999999999876543321110 0111111
Q ss_pred -cCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 405 -RGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 405 -~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
......+.+++.++|+++||+.+++-
T Consensus 217 ~~~~~~~s~~~~~~~L~~AGF~~ve~~ 243 (261)
T 4gek_A 217 ENVMLTDSVETHKARLHKAGFEHSELW 243 (261)
T ss_dssp HHHCCCBCHHHHHHHHHHHTCSEEEEE
T ss_pred cccccCCCHHHHHHHHHHcCCCeEEEE
Confidence 11235678999999999999988753
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-21 Score=177.72 Aligned_cols=164 Identities=18% Similarity=0.244 Sum_probs=133.8
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
.+....+++.+.++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...+ .++++..+|+.++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 355667888889999999999999999999999988 4699999999999999998875322 37999999999999888
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH----HHhcCCCCCCHHHHHHHHHhCC
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY----IKQRGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~aG 423 (485)
++||+|++..+++|++++..++++++++|||||++++.+...........+... ..+.+...++.+++.++|+++|
T Consensus 86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 165 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQ 165 (239)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTT
T ss_pred CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999987655432111111111 1122346678999999999999
Q ss_pred CeEEEEeecc
Q 043471 424 FVDIIAEDRT 433 (485)
Q Consensus 424 f~~~~~~~~~ 433 (485)
|+++.+....
T Consensus 166 f~~~~~~~~~ 175 (239)
T 1xxl_A 166 LAYQDIQKWN 175 (239)
T ss_dssp EEEEEEEEEE
T ss_pred CcEEEEEeec
Confidence 9998776553
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=175.55 Aligned_cols=145 Identities=13% Similarity=0.176 Sum_probs=114.4
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--------------CCCeEEEEe
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--------------FENVKFMCA 107 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~~ 107 (485)
....+++.+...++.+|||+|||+|..+..|+++|.+|+|+|+|+.|++.|+++... ..+++++++
T Consensus 10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 344556666667789999999999999999999999999999999999999998642 358999999
Q ss_pred eccCCCCCCCC-CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 108 DVTSPDLTFSE-DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 108 d~~~~~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
|+.+ +++++ ++||+|++..+++|++.+...+++++++++|||||++++........ ....+.+..+.+.+.++
T Consensus 90 d~~~--l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~----~~~~~~~~~~~~el~~~ 163 (203)
T 1pjz_A 90 DFFA--LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA----LLEGPPFSVPQTWLHRV 163 (203)
T ss_dssp CCSS--STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS----SSSSCCCCCCHHHHHHT
T ss_pred cccc--CCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc----ccCCCCCCCCHHHHHHH
Confidence 9988 55554 79999999999999997778889999999999999855543333211 11122333477888888
Q ss_pred hhhccee
Q 043471 187 FKECQIQ 193 (485)
Q Consensus 187 ~~~~~~~ 193 (485)
+++ ||.
T Consensus 164 ~~~-gf~ 169 (203)
T 1pjz_A 164 MSG-NWE 169 (203)
T ss_dssp SCS-SEE
T ss_pred hcC-CcE
Confidence 887 773
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-22 Score=183.40 Aligned_cols=170 Identities=18% Similarity=0.247 Sum_probs=136.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +++..+|+.+. ++++++||+|++..+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~-------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK-------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT-------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh-------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 467789999999999999999987 78999999999999999875 67888888775 778899999999999
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc---
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT--- 433 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~--- 433 (485)
++|++ +...++++++++|||||++++..+..... ......+..+.+...++.+++.++++++||+++.+....
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~ 188 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL--YSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECE 188 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH--HHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEEEEECCCC
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh--HHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEEEEeccCc
Confidence 99998 45999999999999999999987653211 111112223344567889999999999999999887665
Q ss_pred -------hHHHHHHHHHHHH-HHhcHHHHHHH-hhhh
Q 043471 434 -------EQFVQVLQRELDA-IEKDKDAFIKD-FSEV 461 (485)
Q Consensus 434 -------~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~ 461 (485)
.+ ..++..|.++ +..+++.+... |++.
T Consensus 189 ~~~~l~~~~-~~~l~~w~~~~~~~~~~~~~~~~f~~~ 224 (240)
T 3dli_A 189 ELTKLAKID-SNTVSEEVIRVINENIEKLNRILFGPQ 224 (240)
T ss_dssp TTTSCCCCC-CSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred ccccccccc-cccccHHHHHhhhhhHHHHHhhccCcc
Confidence 44 5567788888 77777777766 6654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=177.90 Aligned_cols=160 Identities=19% Similarity=0.353 Sum_probs=128.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~ 347 (485)
.....+++.+..+++ +|||+|||+|.++..+++..+.+++|+|+|+.+++.|++++.. ...++++.++|+.++++++
T Consensus 31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 456677777777777 9999999999999999987667999999999999999998764 3457999999999999888
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh----------hHHHHHHhcCCCCCCHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV----------EFSEYIKQRGYDLHDVKSYGQ 417 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 417 (485)
++||+|++..+++|++++..++++++++|||||++++.+.......... .+..... .+...++.+++.+
T Consensus 110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 188 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERFQN 188 (219)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHHHH
T ss_pred ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHHHH
Confidence 9999999999999999999999999999999999999875443211100 0111111 1234457799999
Q ss_pred HHHhCCCeEEEEee
Q 043471 418 MLKDAGFVDIIAED 431 (485)
Q Consensus 418 ~l~~aGf~~~~~~~ 431 (485)
+|+++||+++++..
T Consensus 189 ~l~~aGf~~v~~~~ 202 (219)
T 3dlc_A 189 VLDEIGISSYEIIL 202 (219)
T ss_dssp HHHHHTCSSEEEEE
T ss_pred HHHHcCCCeEEEEe
Confidence 99999999887754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=174.87 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=125.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
...+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. .++++..+|+.+++++ ++||
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~d~~~~~~~-~~fD 108 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFEVP-TSID 108 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCCCC-SCCS
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC---CceEEEeCChhhcCCC-CCeE
Confidence 445666666668889999999999999999988 7899999999999999999875 4789999999999887 8999
Q ss_pred EEEEcccccccCCHHH--HHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHh----------cCCCCCCHHHHHHHH
Q 043471 352 VIYSRDTILHIQDKPA--LFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQ----------RGYDLHDVKSYGQML 419 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~--~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l 419 (485)
+|++..+++|+++... +++++.++|||||.+++.++................. ....+++.+++.++|
T Consensus 109 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 109 TIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred EEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 9999999999998877 9999999999999999997554332111111111111 112456899999999
Q ss_pred HhCCCeEEEEeec
Q 043471 420 KDAGFVDIIAEDR 432 (485)
Q Consensus 420 ~~aGf~~~~~~~~ 432 (485)
+++||+++.....
T Consensus 189 ~~aGf~v~~~~~~ 201 (220)
T 3hnr_A 189 ENNGFHVTFTRLN 201 (220)
T ss_dssp HHTTEEEEEEECS
T ss_pred HHCCCEEEEeecc
Confidence 9999998877654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=196.00 Aligned_cols=348 Identities=15% Similarity=0.133 Sum_probs=193.2
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---------------------------------------
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--------------------------------------- 76 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------------------------------- 76 (485)
.++.+.....++......++.+|||.+||+|.+++.++..+
T Consensus 172 apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~ 251 (703)
T 3v97_A 172 APIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG 251 (703)
T ss_dssp CSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc
Confidence 34555666777887777788899999999999998877642
Q ss_pred -----CcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc-c-ChHHHHHHHHHH-
Q 043471 77 -----GHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY-L-SDKEVEKLAERM- 145 (485)
Q Consensus 77 -----~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~-~-~~~~~~~~l~~~- 145 (485)
.+|+|+|+++.+++.|+.+.... ..++|.++|+.++..+..+++||+|+++=.+.. + .......+++.+
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~ 331 (703)
T 3v97_A 252 LAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLG 331 (703)
T ss_dssp HHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHH
T ss_pred cccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHH
Confidence 47999999999999999875322 358999999988543444458999999832211 1 122344455544
Q ss_pred --HhhcccCcEEEEEeccCCC----CCccc------------c-----CCC----CCCCCChhHHHHHhhhcce------
Q 043471 146 --VKWLKVGGYIFFRESCFHQ----SGDSK------------R-----KHN----PTHYREPRFYSKVFKECQI------ 192 (485)
Q Consensus 146 --~~~L~pgG~l~~~~~~~~~----~~~~~------------~-----~~~----~~~~~~~~~~~~~~~~~~~------ 192 (485)
.+.+.|||.+++-...... +.... + ... .......+++.+.++++--
T Consensus 332 ~~lk~~~~g~~~~ilt~~~~l~~~~glk~~k~~~l~nG~l~~~~~~y~~~~~~~~~~~~~~~~~~~~rl~~a~~~r~~~~ 411 (703)
T 3v97_A 332 RIMKNQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVAEDYTNRLRKNLKKFEKWA 411 (703)
T ss_dssp HHHHHHCTTCEEEEEESCHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCCC-------CCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCeEEEEeCCHHHHHHhCCCcccceeeecCCEEEEEEEEEecccccccccCchHHHHHHHHHHHHHHHHHHh
Confidence 4455589998885433210 00000 0 000 0001133444444432211
Q ss_pred ecCCCCceeEEEeeeeecc---------eEEeecC--------ch-hHHHHHHHHhhcc---C--------c---hh---
Q 043471 193 QDASGNSFELSLVGYKCIG---------AYVKNKK--------NQ-NQICWIWQKVRSQ---N--------D---RG--- 237 (485)
Q Consensus 193 ~~~~g~~~~~~~~~~~~~~---------~~~~~~~--------~~-~~~~~~~~~~~~~---~--------~---~~--- 237 (485)
.....+.+.+........+ .++.... .+ .........+... . . +.
T Consensus 412 ~~~~~~~~Rl~~~elp~~gl~vD~y~d~lvvq~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~k~r~~~~g~~~ 491 (703)
T 3v97_A 412 RQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAPPKTIDAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQ 491 (703)
T ss_dssp HHHTBCEEEEEESCSTTSCEEEEEETTEEEEEECC-------CHHHHHHHHHHHHHHHHHTCCGGGEEEECCC-------
T ss_pred ccCCCcEEEEEcccCCcccEEEEEECCEEEEEeCCCccccchHHHHHHHHHHHHHHHHHhCCCcceeEEeccccccCcch
Confidence 1111122222211110000 1111110 00 0011111111000 0 0 00
Q ss_pred HHHhhhh---hhccccchhHH---HHHhccccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEE
Q 043471 238 FQQFLDN---VQYKLNGILRY---ERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVG 311 (485)
Q Consensus 238 ~~~~~d~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g 311 (485)
+..+... ......+.... ......+++.. .+....++..+ .++.+|||+|||+|.++..++.....+|++
T Consensus 492 ~~~~g~~~~~~~v~E~g~~~~v~~~~~~~tG~f~d--~r~~r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~~ga~~V~a 567 (703)
T 3v97_A 492 YQKLGEKGEFLEVTEYNAHLWVNLTDYLDTGLFLD--HRIARRMLGQM--SKGKDFLNLFSYTGSATVHAGLGGARSTTT 567 (703)
T ss_dssp -----CCSCCEEEEETTEEEEECSSSSSSCSCCGG--GHHHHHHHHHH--CTTCEEEEESCTTCHHHHHHHHTTCSEEEE
T ss_pred hhccCCCCceEEEEECCEEEEEeccccccCCCccc--HHHHHHHHHHh--cCCCcEEEeeechhHHHHHHHHCCCCEEEE
Confidence 1110000 00000000000 00000111111 23444555543 368899999999999999998863347999
Q ss_pred EeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCC-CCCCCCccEEEEccc-----------ccccCCHHHHHHHHHhcC
Q 043471 312 IDLSINMISFALERAIG--LK-CSVEFEVADCTKK-TYPENSFDVIYSRDT-----------ILHIQDKPALFKSFFKWL 376 (485)
Q Consensus 312 ~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~-~~~~~~fD~i~~~~~-----------~~~~~~~~~~l~~~~~~L 376 (485)
+|+|+.+++.|++++.. +. .+++++++|+.+. +...++||+|++... +.+..+...+++.+.++|
T Consensus 568 VD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~L 647 (703)
T 3v97_A 568 VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLL 647 (703)
T ss_dssp EESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHE
T ss_pred EeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999763 33 4799999998763 334578999999653 233356778899999999
Q ss_pred CCCcEEEEEec
Q 043471 377 KPGGTVLISDY 387 (485)
Q Consensus 377 kpgG~l~i~~~ 387 (485)
+|||+++++..
T Consensus 648 kpgG~L~~s~~ 658 (703)
T 3v97_A 648 RAGGTIMFSNN 658 (703)
T ss_dssp EEEEEEEEEEC
T ss_pred CCCcEEEEEEC
Confidence 99999998854
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=173.43 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=121.6
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-------------CCCCeEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-------------LKCSVEF 335 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-------------~~~~i~~ 335 (485)
.+.+.++++.+.+.++.+|||+|||+|..+..++++ |.+|+|+|+|+.|++.|+++... ...++++
T Consensus 8 ~~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 8 NKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp THHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred CHHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 345667778888888899999999999999999988 78999999999999999998642 1347999
Q ss_pred EEccCCCCCCCC-CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCH
Q 043471 336 EVADCTKKTYPE-NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDV 412 (485)
Q Consensus 336 ~~~d~~~~~~~~-~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (485)
+++|+.++++++ ++||+|++..+++|++ +...++++++|+|||||++++.......... .......+.
T Consensus 87 ~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~---------~~~~~~~~~ 157 (203)
T 1pjz_A 87 WCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL---------EGPPFSVPQ 157 (203)
T ss_dssp EEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS---------SSCCCCCCH
T ss_pred EECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc---------CCCCCCCCH
Confidence 999999998765 7999999999999996 4567899999999999995554333221100 001123578
Q ss_pred HHHHHHHHhCCCeEEEEeecc
Q 043471 413 KSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+++.+++++ ||+++.++...
T Consensus 158 ~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 158 TWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp HHHHHTSCS-SEEEEEEEESS
T ss_pred HHHHHHhcC-CcEEEEecccc
Confidence 999999998 99988776544
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=177.09 Aligned_cols=135 Identities=11% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC-------------------CCCCeEEEEeeccCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG-------------------HFENVKFMCADVTSP 112 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~-------------------~~~~~~~~~~d~~~~ 112 (485)
..++.+|||+|||+|..+..|+++|.+|+|||+|+.|++.|+++.. ...+++++++|+.+
T Consensus 66 ~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~- 144 (252)
T 2gb4_A 66 GQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD- 144 (252)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT-
T ss_pred CCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc-
Confidence 3567899999999999999999999999999999999999987763 12589999999988
Q ss_pred CCCCCC-CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 113 DLTFSE-DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 113 ~~~~~~-~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
+++++ ++||+|++..+++|++.+....+++++.++|||||.+++......... ...+.+..+++.+.+++...
T Consensus 145 -l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~----~~g~~~~~~~~el~~~l~~~- 218 (252)
T 2gb4_A 145 -LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK----HAGPPFYVPSAELKRLFGTK- 218 (252)
T ss_dssp -GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS----CCCSSCCCCHHHHHHHHTTT-
T ss_pred -CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc----CCCCCCCCCHHHHHHHhhCC-
Confidence 55554 899999999999999877788999999999999999976443322211 11233334778888888863
Q ss_pred ee
Q 043471 192 IQ 193 (485)
Q Consensus 192 ~~ 193 (485)
|.
T Consensus 219 f~ 220 (252)
T 2gb4_A 219 CS 220 (252)
T ss_dssp EE
T ss_pred eE
Confidence 53
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=180.12 Aligned_cols=196 Identities=15% Similarity=0.148 Sum_probs=145.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHH------HHHHHHHHhcCCC--CCeEEEEcc
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSIN------MISFALERAIGLK--CSVEFEVAD 339 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~------~~~~a~~~~~~~~--~~i~~~~~d 339 (485)
.....+++.+.+.++.+|||||||+|.++..++++.+ .+|+|+|+|+. +++.|++++...+ .++++..+|
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 4556788888889999999999999999999998853 79999999997 9999999886433 579999998
Q ss_pred ---CCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh--hH-----HHHHH------
Q 043471 340 ---CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV--EF-----SEYIK------ 403 (485)
Q Consensus 340 ---~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~-----~~~~~------ 403 (485)
...+++++++||+|++..+++|++++..+++.+.++++|||++++.++......... .. .....
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 445566788999999999999999999888888888888999999987665432211 10 11110
Q ss_pred -hcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHH--HHHHHHHhcHHHHHH---Hhhhhhhhhhhh
Q 043471 404 -QRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQ--RELDAIEKDKDAFIK---DFSEVFCFFHLD 468 (485)
Q Consensus 404 -~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 468 (485)
.....+++.+++.++++++||+++...... ..++. .|...+.....+.+. .|++.+++.|..
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~---~~~~~~~~W~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 257 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIVE---DPTLDDAHWEIATTNALLTELKLSTDLRDRVKPLLEA 257 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCBC---CTTCTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEec---CCCCCCchhhHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 111246899999999999999999887652 23333 565543332222222 267778887776
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-21 Score=178.10 Aligned_cols=180 Identities=23% Similarity=0.411 Sum_probs=135.7
Q ss_pred HHHHHHhhhcCcCcchhhhhcC-CCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLD-SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSV 88 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~ 88 (485)
.....||+.....+. .+... .............+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.+
T Consensus 51 ~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~ 128 (254)
T 1xtp_A 51 GKALEYWRTVPATVS--GVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHM 128 (254)
T ss_dssp HHHHHHHHTSCSSHH--HHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHH
T ss_pred hhhhhHHhcCCcccc--ceecCcCccCHHHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHH
Confidence 345778887554332 11110 01111222344677888877788999999999999999999885 469999999999
Q ss_pred HHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc
Q 043471 89 IKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS 168 (485)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 168 (485)
++.|+++....++++++++|+.. +++++++||+|++..+++|++++....+++++.++|+|||++++.+.........
T Consensus 129 ~~~a~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 206 (254)
T 1xtp_A 129 LEEAKRELAGMPVGKFILASMET--ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL 206 (254)
T ss_dssp HHHHHHHTTTSSEEEEEESCGGG--CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE
T ss_pred HHHHHHHhccCCceEEEEccHHH--CCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce
Confidence 99999987655689999999988 5567889999999999999987668899999999999999999988654333222
Q ss_pred ccCCCCCCCCChhHHHHHhhhcceec
Q 043471 169 KRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
..........+.+.+.++++++||..
T Consensus 207 ~~~~~~~~~~~~~~~~~~l~~aGf~~ 232 (254)
T 1xtp_A 207 VDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp EETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred ecccCCcccCCHHHHHHHHHHCCCEE
Confidence 22333344558899999999999854
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=170.67 Aligned_cols=155 Identities=23% Similarity=0.275 Sum_probs=131.1
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.+.++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++...+ .++++..+|+.+++++++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 4567778888889999999999999999999885 4699999999999999999875332 279999999999988889
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|++..+++|++++..+++++.++|||||++++.++.......... ....++.+++.++++++||+++.
T Consensus 106 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPP--------PEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCC--------GGGSCCHHHHHHHHHHTTCEEEE
T ss_pred CeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCc--------hhcccCHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999999999999999876554322111 12456899999999999999988
Q ss_pred Eeecch
Q 043471 429 AEDRTE 434 (485)
Q Consensus 429 ~~~~~~ 434 (485)
......
T Consensus 178 ~~~~~~ 183 (219)
T 3dh0_A 178 VVEVGK 183 (219)
T ss_dssp EEEETT
T ss_pred EEeeCC
Confidence 766543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=181.46 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=127.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. ++++.++|+.++++++++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~d~~~~~~~~~~ 94 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-----QVEWFTGYAENLALPDKS 94 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT-----TEEEECCCTTSCCSCTTC
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc-----CCEEEECchhhCCCCCCC
Confidence 56677788888888999999999999999999985 789999999999998876543 799999999999998899
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC---hhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS---VEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
||+|++..+++|++++..++++++++|| ||++++.++........ ..+.......+..+.+.+.+. +|+++||++
T Consensus 95 fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~ 172 (261)
T 3ege_A 95 VDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRR 172 (261)
T ss_dssp BSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSE
T ss_pred EeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCc
Confidence 9999999999999999999999999999 99998887764332211 112222223334567788899 999999999
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
+.+...
T Consensus 173 v~~~~~ 178 (261)
T 3ege_A 173 VEAIPF 178 (261)
T ss_dssp EEEEEC
T ss_pred eeEEEe
Confidence 887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=180.24 Aligned_cols=149 Identities=17% Similarity=0.312 Sum_probs=120.5
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
.+.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++.....++.+..+|+.++++++++||+|++..++
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 5677889999999999999999987 789999999999999999997444568999999999998888999999999999
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC----ChhHHHHHHhcCC------CCCCHHHHHHHHHhCCCeEEEE
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP----SVEFSEYIKQRGY------DLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
+|++++..+++++.++|||||++++. +....... ...+.......+. ...+.+++.++|+++||+++.+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEE-EEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 99999999999999999999999988 33221111 1112222222222 2456788999999999998765
Q ss_pred e
Q 043471 430 E 430 (485)
Q Consensus 430 ~ 430 (485)
.
T Consensus 194 ~ 194 (263)
T 2yqz_A 194 E 194 (263)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-21 Score=171.32 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=115.7
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~ 134 (485)
+.+|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++. ++++++++|+.+ +++++++||+|+++.+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH---PSVTFHHGTITD--LSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC---TTSEEECCCGGG--GGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC---CCCeEEeCcccc--cccCCCCeEEEEehhhHhcCC
Confidence 789999999999999999999999999999999999999984 589999999988 667789999999999999998
Q ss_pred hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 135 DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 135 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
.+....+++++.++|+|||.+++.++..................+.+.+.++++++||...
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 177 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVT 177 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEE
Confidence 5558899999999999999999988765543333233334445588999999999999653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=172.71 Aligned_cols=149 Identities=20% Similarity=0.287 Sum_probs=122.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
++++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..+++++++|+.++++++++||+|++..+++
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERGE--GPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTTC--BTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhcc--cCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence 347789999999999999999988 7899999999999999988752 3579999999999998889999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH-hcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK-QRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
|++++..++++++++|+|||++++.++..........+..... ......++..++.++++++||+++.....
T Consensus 128 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 200 (242)
T 3l8d_A 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGV 200 (242)
T ss_dssp SSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred hccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence 9999999999999999999999999765433222222211111 12235678999999999999999987643
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=169.23 Aligned_cols=159 Identities=22% Similarity=0.332 Sum_probs=125.8
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+. ..++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|+++....+ +++++++|+.+++++ ++
T Consensus 32 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~-~~ 109 (234)
T 3dtn_A 32 YGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-KVKYIEADYSKYDFE-EK 109 (234)
T ss_dssp HHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT-TEEEEESCTTTCCCC-SC
T ss_pred HHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC-CEEEEeCchhccCCC-CC
Confidence 344555554 5577899999999999999999987 6799999999999999999987655 899999999999876 89
Q ss_pred ccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEecccCCCCCChh-----HHHHHHh---------------cCC
Q 043471 350 FDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIKQ---------------RGY 407 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~~---------------~~~ 407 (485)
||+|++..+++|+++.. .++++++++|||||++++.+........... +...... ...
T Consensus 110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (234)
T 3dtn_A 110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLD 189 (234)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CC
T ss_pred ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccc
Confidence 99999999999997655 5999999999999999999876543221110 1111100 123
Q ss_pred CCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 408 DLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
..++.+++.++|+++||+++++...
T Consensus 190 ~~~~~~~~~~ll~~aGF~~v~~~~~ 214 (234)
T 3dtn_A 190 KDIEMNQQLNWLKEAGFRDVSCIYK 214 (234)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccCHHHHHHHHHHcCCCceeeeee
Confidence 4568899999999999999987543
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-21 Score=176.98 Aligned_cols=154 Identities=19% Similarity=0.294 Sum_probs=124.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
.....+++.+...++.+|||+|||+|.++..+++.+ +.+++|+|+|+.|++.++++. .++++..+|+.+++ +++
T Consensus 20 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~----~~~~~~~~d~~~~~-~~~ 94 (259)
T 2p35_A 20 RPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATWK-PAQ 94 (259)
T ss_dssp HHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTCC-CSS
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC----CCcEEEECChhhcC-ccC
Confidence 456678888888888999999999999999999876 679999999999999999883 37899999999988 778
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH------------hcCCCCCCHHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK------------QRGYDLHDVKSYG 416 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 416 (485)
+||+|++..+++|++++..++++++++|||||++++..+..........+..... +.+..+.+.+++.
T Consensus 95 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T 2p35_A 95 KADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYF 174 (259)
T ss_dssp CEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHH
T ss_pred CcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999764322111111111110 1234568899999
Q ss_pred HHHHhCCCeEEE
Q 043471 417 QMLKDAGFVDII 428 (485)
Q Consensus 417 ~~l~~aGf~~~~ 428 (485)
++|+++||++..
T Consensus 175 ~~l~~aGf~v~~ 186 (259)
T 2p35_A 175 NALSPKSSRVDV 186 (259)
T ss_dssp HHHGGGEEEEEE
T ss_pred HHHHhcCCceEE
Confidence 999999997543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-20 Score=172.71 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=118.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++++.++|+.++ +++++||+|++..+++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~---~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD---GITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS---CEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC---CeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 46679999999999999999987 56999999999999999998754 799999999887 46789999999999999
Q ss_pred cCCHHHHHHHHH-hcCCCCcEEEEEecccCCCC----------CCh-hH-HHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 362 IQDKPALFKSFF-KWLKPGGTVLISDYCKSFGT----------PSV-EF-SEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 362 ~~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~~----------~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
++++..++++++ ++|||||++++.++...... ... .+ .......+...++.+++.++|+++||+++.
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 195 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTY 195 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999999 99999999999976543210 000 00 011122334578999999999999999998
Q ss_pred Eee
Q 043471 429 AED 431 (485)
Q Consensus 429 ~~~ 431 (485)
+..
T Consensus 196 ~~~ 198 (250)
T 2p7i_A 196 RSG 198 (250)
T ss_dssp EEE
T ss_pred Eee
Confidence 764
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-20 Score=175.59 Aligned_cols=153 Identities=22% Similarity=0.327 Sum_probs=123.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++. .++.+..+|+.++++ +++||+
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~-~~~fD~ 120 (279)
T 3ccf_A 47 EDLLQLLNPQPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAATMIEKARQNY----PHLHFDVADARNFRV-DKPLDA 120 (279)
T ss_dssp CHHHHHHCCCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC----TTSCEEECCTTTCCC-SSCEEE
T ss_pred HHHHHHhCCCCCCEEEEecCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHhhC----CCCEEEECChhhCCc-CCCcCE
Confidence 35566677788899999999999999999984 789999999999999999886 378999999999887 579999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHhc---------CCCCCCHHHHHHHHHhC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQR---------GYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~~~~~~~~l~~a 422 (485)
|++..+++|++++..++++++++|||||++++..+....... ...+....... ...+.+.+++.++|+++
T Consensus 121 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 121 VFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred EEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 999999999999999999999999999999998765322100 01111111111 22467899999999999
Q ss_pred CCeEEEEee
Q 043471 423 GFVDIIAED 431 (485)
Q Consensus 423 Gf~~~~~~~ 431 (485)
||+++.++.
T Consensus 201 Gf~~~~~~~ 209 (279)
T 3ccf_A 201 GFDVTYAAL 209 (279)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEE
Confidence 999987653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=171.14 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=120.8
Q ss_pred hhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCC
Q 043471 42 ERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 42 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (485)
....+++.+. ..++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++++++++|+.+ ++++
T Consensus 31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~~~~- 107 (234)
T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSK--YDFE- 107 (234)
T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTT--CCCC-
T ss_pred HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhc--cCCC-
Confidence 3355666665 456789999999999999999998 779999999999999999998766699999999988 4444
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-------------------------cCCC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-------------------------RKHN 173 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------------------~~~~ 173 (485)
++||+|++..+++|++++....+++++.++|+|||.+++.+.......... ....
T Consensus 108 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (234)
T 3dtn_A 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSK 187 (234)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----
T ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcc
Confidence 899999999999999987777899999999999999999886543221100 0112
Q ss_pred CCCCCChhHHHHHhhhcceecCC
Q 043471 174 PTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.....+.+.+.++++++||..+.
T Consensus 188 ~~~~~~~~~~~~ll~~aGF~~v~ 210 (234)
T 3dtn_A 188 LDKDIEMNQQLNWLKEAGFRDVS 210 (234)
T ss_dssp CCCCCBHHHHHHHHHHTTCEEEE
T ss_pred cccccCHHHHHHHHHHcCCCcee
Confidence 22334678899999999997654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-20 Score=174.00 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=103.8
Q ss_pred CCCCCChhHHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cE
Q 043471 1 MGTQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HV 79 (485)
Q Consensus 1 ~~~~~~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v 79 (485)
|+|.++. .++..||+.+........ .......+..+++.++..++.+|||||||+|.++..+++.+. +|
T Consensus 1 M~m~~~~---y~~~~~~~~y~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v 70 (253)
T 3g5l_A 1 MSLKENK---YDDKHFFEQYSQMPRSKE-------GLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKV 70 (253)
T ss_dssp ---------------------------C-------HHHHHHHHHHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEE
T ss_pred CCccccc---cccHHHHHHHHHhhcccc-------cccchhhHHHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEE
Confidence 6665543 555667766443221100 001113445677778877899999999999999999999987 99
Q ss_pred EEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 80 IALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 80 ~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|+|+|+.+++.|+++.. ..+++++++|+.+ +++++++||+|++..+++|+++ ...+++++.++|+|||.+++..
T Consensus 71 ~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 71 LGIDLSERMLTEAKRKTT-SPVVCYEQKAIED--IAIEPDAYNVVLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp EEEESCHHHHHHHHHHCC-CTTEEEEECCGGG--CCCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHhhc-cCCeEEEEcchhh--CCCCCCCeEEEEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEe
Confidence 999999999999999876 4689999999988 5677899999999999999987 6799999999999999999975
Q ss_pred cc
Q 043471 160 SC 161 (485)
Q Consensus 160 ~~ 161 (485)
..
T Consensus 146 ~~ 147 (253)
T 3g5l_A 146 EH 147 (253)
T ss_dssp EC
T ss_pred CC
Confidence 43
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=169.15 Aligned_cols=179 Identities=21% Similarity=0.248 Sum_probs=132.6
Q ss_pred CCCChhHHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEE
Q 043471 3 TQSNHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIA 81 (485)
Q Consensus 3 ~~~~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~g 81 (485)
|++.....+..+.||+..+..+...- ..........+++.+. ..++.+|||||||+|.++..+++.+.+|+|
T Consensus 1 M~~~~~~~~~~~~~~~~~a~~y~~~~-------~~~~~~~~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~ 73 (218)
T 3ou2_A 1 MTTSHGLIESQLSYYRARASEYDATF-------VPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTA 73 (218)
T ss_dssp --CCHHHHHHHHHHHHHHGGGHHHHH-------HHHHTTTHHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEE
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEE
Confidence 45556666777899998766554211 0011122445555554 456779999999999999999999999999
Q ss_pred EeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 82 LDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 82 iD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+|+|+.+++.+++. ..++++++++|+.+. +++++||+|+++.+++|++++....+++++.++|+|||.+++.+..
T Consensus 74 ~D~s~~~~~~a~~~--~~~~~~~~~~d~~~~---~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 74 LDGSAEMIAEAGRH--GLDNVEFRQQDLFDW---TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp EESCHHHHHHHGGG--CCTTEEEEECCTTSC---CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EeCCHHHHHHHHhc--CCCCeEEEecccccC---CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 99999999999982 226899999999874 5788999999999999999876789999999999999999998775
Q ss_pred CCCCCccc-----------c-CCCC------CCCCChhHHHHHhhhccee
Q 043471 162 FHQSGDSK-----------R-KHNP------THYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 162 ~~~~~~~~-----------~-~~~~------~~~~~~~~~~~~~~~~~~~ 193 (485)
........ . .... ..+.+++.+.++++++||.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 198 (218)
T 3ou2_A 149 DHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWS 198 (218)
T ss_dssp CCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEE
T ss_pred CCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCE
Confidence 42111000 0 0011 1234788999999999996
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=9e-20 Score=167.62 Aligned_cols=150 Identities=22% Similarity=0.312 Sum_probs=122.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC------CeEEEEccCCCCCCCCCCccEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC------SVEFEVADCTKKTYPENSFDVIY 354 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~------~i~~~~~d~~~~~~~~~~fD~i~ 354 (485)
++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+. ++++..+|+..+++++++||+|+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 457889999999999999999988 78999999999999999998865433 58999999999998889999999
Q ss_pred EcccccccCCHH---HHHHHHHhcCCCCcEEEEEecccCCCCCChhH--HHHHHh------------------cCCCCCC
Q 043471 355 SRDTILHIQDKP---ALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--SEYIKQ------------------RGYDLHD 411 (485)
Q Consensus 355 ~~~~~~~~~~~~---~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--~~~~~~------------------~~~~~~~ 411 (485)
+..+++|++++. .+++++.++|||||++++.++........... ...... .....++
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 999999999888 89999999999999999998765332211100 000000 0123678
Q ss_pred HHHHHHHHHhCCCeEEEEee
Q 043471 412 VKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+++.++|+++||+++.+..
T Consensus 187 ~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp HHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEe
Confidence 99999999999999998764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-20 Score=175.98 Aligned_cols=160 Identities=20% Similarity=0.206 Sum_probs=126.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCC-CCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKT-YPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~-~~~~ 348 (485)
+..+++.+..+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .+++++.+|+.+++ ++++
T Consensus 58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSS
T ss_pred HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCC
Confidence 45667776544 679999999999999999988 8899999999999999999886443 57999999999887 6789
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh----hHHHHH---------HhcCCCCCCHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV----EFSEYI---------KQRGYDLHDVKSY 415 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~ 415 (485)
+||+|++..+++|++++..+++++.++|||||++++.++......... .+.... ......+++.+++
T Consensus 136 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 136 PVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred CceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 999999999999999999999999999999999999976532210000 000000 0112256789999
Q ss_pred HHHHHhCCCeEEEEeecc
Q 043471 416 GQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~~~~ 433 (485)
.++|+++||+++.+....
T Consensus 216 ~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 216 YLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp HHHHHHTTCEEEEEEEES
T ss_pred HHHHHHCCCceeeeeeEE
Confidence 999999999999887643
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=172.13 Aligned_cols=149 Identities=19% Similarity=0.256 Sum_probs=120.7
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
...+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.. .+++++++|+.+ ++++ ++||
T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~--~~~~-~~fD 108 (220)
T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--KEFSITEGDFLS--FEVP-TSID 108 (220)
T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC--TTCCEESCCSSS--CCCC-SCCS
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC--CceEEEeCChhh--cCCC-CCeE
Confidence 3466666666688899999999999999999999999999999999999999875 589999999998 4555 8999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------------cCCCCCCCCChhHHHHHh
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 187 (485)
+|+++.+++|++++....+++++.++|||||.+++.++......... ......++.+.+.+..++
T Consensus 109 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 109 TIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF 188 (220)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH
T ss_pred EEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH
Confidence 99999999999987656699999999999999999876543221110 001112444788999999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||....
T Consensus 189 ~~aGf~v~~ 197 (220)
T 3hnr_A 189 ENNGFHVTF 197 (220)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 999996443
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=164.89 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=118.7
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++.. +++++++|+.++++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL-GHQIEGLEPATRLVELARQTHP----SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMG 116 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT-TCCEEEECCCHHHHHHHHHHCT----TSEEECCCGGGGGGSCCCEEEEEEESSSTTCC
T ss_pred CCeEEEecCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhCC----CCeEEeCcccccccCCCCeEEEEehhhHhcCC
Confidence 779999999999999999988 7899999999999999998843 78999999999888889999999999999996
Q ss_pred --CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 364 --DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 364 --~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
++..+++++.++|||||++++.++....... +.. .......++.+++.++|+++||+++.+.....
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 117 PGELPDALVALRMAVEDGGGLLMSFFSGPSLEP---MYH--PVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE---ECC--SSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh---hhc--hhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 8999999999999999999999765543110 000 00122457899999999999999998876543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=173.05 Aligned_cols=158 Identities=23% Similarity=0.266 Sum_probs=123.7
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
.+++.+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++.. ..++++..+|+.++++++++||+|
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--SPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC--CTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc--cCCeEEEEcchhhCCCCCCCeEEE
Confidence 455556666889999999999999999998843399999999999999999875 458999999999999888999999
Q ss_pred EEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCC------------CCCC--hhHHHHHH-----------hcCCC
Q 043471 354 YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF------------GTPS--VEFSEYIK-----------QRGYD 408 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------------~~~~--~~~~~~~~-----------~~~~~ 408 (485)
++..+++|++++..++++++++|||||++++....... .... ..+..+.. .....
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (253)
T 3g5l_A 113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKY 192 (253)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEE
T ss_pred EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccE
Confidence 99999999999999999999999999999998543210 0000 00000000 00011
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
..+.+++.++|+++||+++.+.+..
T Consensus 193 ~~t~~~~~~~l~~aGF~~~~~~e~~ 217 (253)
T 3g5l_A 193 HRTVTTYIQTLLKNGFQINSVIEPE 217 (253)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred ecCHHHHHHHHHHcCCeeeeeecCC
Confidence 2389999999999999999987654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.5e-20 Score=172.45 Aligned_cols=155 Identities=21% Similarity=0.369 Sum_probs=127.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
...+....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....++++++++|+.+ +++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~--~~~ 116 (266)
T 3ujc_A 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILT--KEF 116 (266)
T ss_dssp THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTT--CCC
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcccc--CCC
Confidence 33455678888888888999999999999999999998 889999999999999999987655789999999988 567
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHHHhhhc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSKVFKEC 190 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 190 (485)
++++||+|+++.+++|++.+....+++++.++|+|||.+++.++.......... ........+.+.+...++++
T Consensus 117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 196 (266)
T 3ujc_A 117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTAC 196 (266)
T ss_dssp CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHHHHT
T ss_pred CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHHHHc
Confidence 789999999999999997666889999999999999999998765433111110 01123345788999999999
Q ss_pred ceec
Q 043471 191 QIQD 194 (485)
Q Consensus 191 ~~~~ 194 (485)
||..
T Consensus 197 Gf~~ 200 (266)
T 3ujc_A 197 NFKN 200 (266)
T ss_dssp TCEE
T ss_pred CCeE
Confidence 9854
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-20 Score=171.75 Aligned_cols=157 Identities=21% Similarity=0.277 Sum_probs=127.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.....+++.+...++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.... .++++.++|+.++++++++
T Consensus 80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~ 158 (254)
T 1xtp_A 80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETATLPPNT 158 (254)
T ss_dssp HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCCCCSSC
T ss_pred HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC-CceEEEEccHHHCCCCCCC
Confidence 445677888877788999999999999999998875558999999999999999987654 5799999999998888899
Q ss_pred ccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 350 FDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 350 fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
||+|++..+++|++ ++..++++++++|||||++++.+.......... . ...+....+.+++.++|+++||+++
T Consensus 159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~l~~aGf~~~ 233 (254)
T 1xtp_A 159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV--D---KEDSSLTRSDIHYKRLFNESGVRVV 233 (254)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE--E---TTTTEEEBCHHHHHHHHHHHTCCEE
T ss_pred eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee--c---ccCCcccCCHHHHHHHHHHCCCEEE
Confidence 99999999999994 588999999999999999999975432211100 0 0111234688999999999999999
Q ss_pred EEeec
Q 043471 428 IAEDR 432 (485)
Q Consensus 428 ~~~~~ 432 (485)
.+...
T Consensus 234 ~~~~~ 238 (254)
T 1xtp_A 234 KEAFQ 238 (254)
T ss_dssp EEEEC
T ss_pred Eeeec
Confidence 87654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-20 Score=171.77 Aligned_cols=157 Identities=26% Similarity=0.339 Sum_probs=126.6
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEE
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIY 354 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~ 354 (485)
....+.++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ .++++..+|+.++++++++||+|+
T Consensus 31 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 110 (276)
T 3mgg_A 31 HDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIF 110 (276)
T ss_dssp TTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEE
T ss_pred hcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEE
Confidence 33456788999999999999999999886 6799999999999999999876433 379999999999998889999999
Q ss_pred EcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCC---CCChh----HH---HHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 355 SRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG---TPSVE----FS---EYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 355 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~----~~---~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
+..+++|++++..+++++.++|||||++++.+...... ..... +. ......+....+...+.++|+++||
T Consensus 111 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf 190 (276)
T 3mgg_A 111 VCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGF 190 (276)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTC
T ss_pred EechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999999999999987544221 11111 11 1112223455677899999999999
Q ss_pred eEEEEeecc
Q 043471 425 VDIIAEDRT 433 (485)
Q Consensus 425 ~~~~~~~~~ 433 (485)
++++++...
T Consensus 191 ~~v~~~~~~ 199 (276)
T 3mgg_A 191 EKIRVEPRM 199 (276)
T ss_dssp EEEEEEEEE
T ss_pred CeEEEeeEE
Confidence 999887554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.5e-20 Score=167.61 Aligned_cols=153 Identities=25% Similarity=0.312 Sum_probs=126.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYP 346 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~ 346 (485)
...+..++.....+++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ...++++.++|+.+.+ +
T Consensus 53 ~~~l~~~~~~~~~~~~-~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~ 129 (235)
T 3lcc_A 53 TPLIVHLVDTSSLPLG-RALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-P 129 (235)
T ss_dssp CHHHHHHHHTTCSCCE-EEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-C
T ss_pred CHHHHHHHHhcCCCCC-CEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-C
Confidence 3456667777666554 9999999999999999876 78999999999999999999864 2357999999999976 4
Q ss_pred CCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 347 ENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
+++||+|++..+++|++ +...+++++.++|||||++++.++......... ....+.+++.++|+++||
T Consensus 130 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~Gf 199 (235)
T 3lcc_A 130 TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGP----------PYKVDVSTFEEVLVPIGF 199 (235)
T ss_dssp SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCS----------SCCCCHHHHHHHHGGGTE
T ss_pred CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCC----------CccCCHHHHHHHHHHcCC
Confidence 56999999999999998 899999999999999999999876554321111 123678999999999999
Q ss_pred eEEEEeecch
Q 043471 425 VDIIAEDRTE 434 (485)
Q Consensus 425 ~~~~~~~~~~ 434 (485)
+++.++....
T Consensus 200 ~~~~~~~~~~ 209 (235)
T 3lcc_A 200 KAVSVEENPH 209 (235)
T ss_dssp EEEEEEECTT
T ss_pred eEEEEEecCC
Confidence 9998876553
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=171.18 Aligned_cols=158 Identities=18% Similarity=0.244 Sum_probs=126.9
Q ss_pred HHHHHHHc-CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+ .+.++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|+++....+.++++.++|+.+++++ +
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~-~ 88 (284)
T 3gu3_A 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-D 88 (284)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-S
T ss_pred HHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcC-C
Confidence 44455554 56778899999999999999999886 47999999999999999999876666899999999998874 6
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc-----C---CCC------CChhHHHH----HHhcCCCCC
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK-----S---FGT------PSVEFSEY----IKQRGYDLH 410 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-----~---~~~------~~~~~~~~----~~~~~~~~~ 410 (485)
+||+|++..+++|++++..++++++++|||||++++.++.. . ... ....+... ....+....
T Consensus 89 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred CeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 99999999999999999999999999999999999998761 1 000 01112221 223344566
Q ss_pred CHHHHHHHHHhCCCeEEEEe
Q 043471 411 DVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~~ 430 (485)
+...+.++|+++||+.+.+.
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 77889999999999998773
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=173.54 Aligned_cols=141 Identities=16% Similarity=0.252 Sum_probs=110.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.+++.+|||||||+|..+..|+++ +.+|+|+|+|+.|++.|+++... ..+++++++|+.+ +++ ++||+|
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~--~~~--~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD--IAI--ENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT--CCC--CSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc--ccc--cccccc
Confidence 457889999999999999999986 56899999999999999997543 2479999999988 443 569999
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------------CC--------------CCCCCC
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------------KH--------------NPTHYR 178 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------------~~--------------~~~~~~ 178 (485)
+++.+++|++++++..++++++++|||||.+++++........... .. ......
T Consensus 144 ~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 144 VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 9999999999877889999999999999999998765433211100 00 001223
Q ss_pred ChhHHHHHhhhcceecCC
Q 043471 179 EPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (485)
+.+.+...|+++||..++
T Consensus 224 s~~~~~~~L~~AGF~~ve 241 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSE 241 (261)
T ss_dssp CHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHcCCCeEE
Confidence 567788889999996543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=170.35 Aligned_cols=177 Identities=16% Similarity=0.197 Sum_probs=118.3
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHH
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI 89 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~ 89 (485)
.+..+.||+..+..+....... ............+.+.++ ++.+|||||||+|.++..+++.+.+|+|+|+|+.++
T Consensus 13 ~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~ 88 (242)
T 3l8d_A 13 HESAEKKWDSSAEFWNQNSQEM--WDSGSRSTIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMI 88 (242)
T ss_dssp -------------------CHH--HHTSTTTTHHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHH
T ss_pred HHHHHHHHHhHHHHhhhhhhhc--cCcccHHHHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 3456788988666544211100 001112223334444443 578999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc
Q 043471 90 KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK 169 (485)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 169 (485)
+.++++.. ..+++++++|+.+ +++++++||+|++..+++|+++ ...+++++.++|+|||.+++.+..........
T Consensus 89 ~~a~~~~~-~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~ 163 (242)
T 3l8d_A 89 QKGKERGE-GPDLSFIKGDLSS--LPFENEQFEAIMAINSLEWTEE--PLRALNEIKRVLKSDGYACIAILGPTAKPREN 163 (242)
T ss_dssp HHHHTTTC-BTTEEEEECBTTB--CSSCTTCEEEEEEESCTTSSSC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGGG
T ss_pred HHHHhhcc-cCCceEEEcchhc--CCCCCCCccEEEEcChHhhccC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhhh
Confidence 99998753 3689999999988 5667899999999999999987 56999999999999999999876543221111
Q ss_pred ------cCCCCCCCCChhHHHHHhhhcceecC
Q 043471 170 ------RKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 170 ------~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
.........++..+..+++++||...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 195 (242)
T 3l8d_A 164 SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVV 195 (242)
T ss_dssp GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEE
T ss_pred hhhhhccccccccCCCHHHHHHHHHHcCCEEE
Confidence 11222334577889999999999654
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=164.04 Aligned_cols=156 Identities=21% Similarity=0.216 Sum_probs=119.4
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
...+++.+. +.++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++ .+. .++++..+|+.++ +++++|
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~--~~~-~~~~~~~~d~~~~-~~~~~~ 108 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGR--HGL-DNVEFRQQDLFDW-TPDRQW 108 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGG--GCC-TTEEEEECCTTSC-CCSSCE
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHh--cCC-CCeEEEecccccC-CCCCce
Confidence 334555553 667789999999999999999988 7899999999999999988 222 4799999999988 678999
Q ss_pred cEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHh-------cC------CCCCCHHHH
Q 043471 351 DVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQ-------RG------YDLHDVKSY 415 (485)
Q Consensus 351 D~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~ 415 (485)
|+|++..+++|+++. ..+++++.++|||||.+++.++..........+.....+ .+ ..+++.+++
T Consensus 109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (218)
T 3ou2_A 109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAEL 188 (218)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHH
T ss_pred eEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHH
Confidence 999999999999875 899999999999999999998766322211111100000 00 235689999
Q ss_pred HHHHHhCCCeEEEEeec
Q 043471 416 GQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 416 ~~~l~~aGf~~~~~~~~ 432 (485)
.++|+++||++...+..
T Consensus 189 ~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 189 TERLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCEEEeeecc
Confidence 99999999997655543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.4e-20 Score=169.77 Aligned_cols=169 Identities=12% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI 89 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~ 89 (485)
..++.||+.....+.... ......+.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+|+.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~ 77 (250)
T 2p7i_A 7 NYDQEIKDTAGHKYAYNF---------DFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAI 77 (250)
T ss_dssp ----------------CH---------HHHTHHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHH
T ss_pred CCCHHHHhhHHHHhcCcc---------chhhHHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHH
Confidence 345678998666553211 01122233444433 24677999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHH-hhcccCcEEEEEeccCCCCCc-
Q 043471 90 KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV-KWLKVGGYIFFRESCFHQSGD- 167 (485)
Q Consensus 90 ~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~-~~L~pgG~l~~~~~~~~~~~~- 167 (485)
+.|+++... +++++++|+.+. +++++||+|++..+++|+++ ...+++++. ++|||||++++.+++......
T Consensus 78 ~~a~~~~~~--~v~~~~~d~~~~---~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~ 150 (250)
T 2p7i_A 78 SHAQGRLKD--GITYIHSRFEDA---QLPRRYDNIVLTHVLEHIDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQ 150 (250)
T ss_dssp HHHHHHSCS--CEEEEESCGGGC---CCSSCEEEEEEESCGGGCSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHH
T ss_pred HHHHHhhhC--CeEEEEccHHHc---CcCCcccEEEEhhHHHhhcC--HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHH
Confidence 999998754 899999999874 36789999999999999988 569999999 999999999998865432100
Q ss_pred -------ccc---------CCCCCCCCChhHHHHHhhhcceecC
Q 043471 168 -------SKR---------KHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 168 -------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
... ........+.+.+.++++++||...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 194 (250)
T 2p7i_A 151 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVT 194 (250)
T ss_dssp HHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 000 1112234478899999999998553
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.8e-20 Score=169.29 Aligned_cols=181 Identities=19% Similarity=0.310 Sum_probs=128.9
Q ss_pred HHHHHHHHhhhcCcCcchhhhhcCCC-cCccChhhh----HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc-CcEEE
Q 043471 9 EREIQKNYWMEHSANLTVEAMMLDSK-ASDLDKEER----PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA-GHVIA 81 (485)
Q Consensus 9 ~~~~~~~yw~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~g 81 (485)
..+..+.||+..+..+. .++.... ......... +.++..+. ..++.+|||||||+|.++..|++.+ .+|+|
T Consensus 30 ~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~ 107 (241)
T 2ex4_A 30 FYSKAKTYWKQIPPTVD--GMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDM 107 (241)
T ss_dssp HHHHHHHHHHTSCSSHH--HHTTTCGGGHHHHHHHHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTTCSEEEE
T ss_pred hHHHHHHHHhcCCcccc--ccccCCCCcchhhHHhHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence 44556899998766432 2221100 000111112 23333332 2357899999999999999998884 59999
Q ss_pred EeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 82 LDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 82 iD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|+|+.+++.|+++.... .+++++++|+.+ +++++++||+|++..+++|++++....+++++.++|+|||++++.+
T Consensus 108 vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 185 (241)
T 2ex4_A 108 VDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD--FTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 185 (241)
T ss_dssp EESCHHHHHHHHHHTGGGGGGEEEEEECCGGG--CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHhhhcCCceEEEEEcChhh--cCCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 999999999999986542 368999999987 5566779999999999999998777899999999999999999987
Q ss_pred ccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 160 SCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+.... .............+.+.+.++++++||..
T Consensus 186 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 219 (241)
T 2ex4_A 186 NMAQE-GVILDDVDSSVCRDLDVVRRIICSAGLSL 219 (241)
T ss_dssp EEBSS-SEEEETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred ccCCC-cceecccCCcccCCHHHHHHHHHHcCCeE
Confidence 76543 11111222333347889999999999854
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.6e-20 Score=171.00 Aligned_cols=157 Identities=12% Similarity=0.231 Sum_probs=122.1
Q ss_pred CcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccC
Q 043471 34 KASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTS 111 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~ 111 (485)
.....+......+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++.. ..++++++++|+.+
T Consensus 17 s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~ 96 (260)
T 1vl5_A 17 SQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96 (260)
T ss_dssp ------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred CccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence 3344555677788888888889999999999999999999998899999999999999998753 22479999999988
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------cCCCCCCCCChhH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------RKHNPTHYREPRF 182 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 182 (485)
+++++++||+|+++.+++|+++ ...+++++.++|||||++++.+.......... .........+.+.
T Consensus 97 --l~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (260)
T 1vl5_A 97 --MPFTDERFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSD 172 (260)
T ss_dssp --CCSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHH
T ss_pred --CCCCCCCEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHH
Confidence 6678899999999999999998 56999999999999999999765432221000 0111233447788
Q ss_pred HHHHhhhcceec
Q 043471 183 YSKVFKECQIQD 194 (485)
Q Consensus 183 ~~~~~~~~~~~~ 194 (485)
+.++++++||..
T Consensus 173 ~~~~l~~aGf~~ 184 (260)
T 1vl5_A 173 WLKMLEEAGFEL 184 (260)
T ss_dssp HHHHHHHHTCEE
T ss_pred HHHHHHHCCCeE
Confidence 999999999854
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-19 Score=164.95 Aligned_cols=158 Identities=25% Similarity=0.372 Sum_probs=124.3
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.+.+.+...++.+|||||||+|.++..+++. +. +++|+|+|+.+++.|+++... .++++..+|+.++++++++||+
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~d~~~~~~~~~~fD~ 110 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLHLPQDSFDL 110 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc--CCceEEEcChhhccCCCCCceE
Confidence 4556666678889999999999999999987 66 999999999999999988653 3799999999998888889999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCC---CCCCh----------hH----------HHHHH-hcCCC
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF---GTPSV----------EF----------SEYIK-QRGYD 408 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~~----------~~----------~~~~~-~~~~~ 408 (485)
|++..+++|++++..++++++++|||||++++....... ..... .. ..+.. .....
T Consensus 111 v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (243)
T 3bkw_A 111 AYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKH 190 (243)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEE
T ss_pred EEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEE
Confidence 999999999999999999999999999999998643210 00000 00 00011 11123
Q ss_pred CCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 409 LHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 409 ~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
.++.+++.++|+++||+++.+.....
T Consensus 191 ~~t~~~~~~~l~~aGF~~~~~~~~~~ 216 (243)
T 3bkw_A 191 HRTVGTTLNALIRSGFAIEHVEEFCP 216 (243)
T ss_dssp ECCHHHHHHHHHHTTCEEEEEEECCC
T ss_pred eccHHHHHHHHHHcCCEeeeeccCCC
Confidence 35899999999999999998876543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=164.18 Aligned_cols=166 Identities=14% Similarity=0.193 Sum_probs=127.0
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIK 90 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~ 90 (485)
...+.||+.....+. ..... ......++..++ ++.+|||||||+|.++..+++.+.+|+|+|+|+.+++
T Consensus 11 ~~~~~~~~~~~~~y~-------~~~~~--~~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~ 79 (211)
T 3e23_A 11 DDTLRFYRGNATAYA-------ERQPR--SATLTKFLGELP--AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAA 79 (211)
T ss_dssp HHHHHHHHHSHHHHT-------TCCCC--CHHHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHHh-------hccch--hHHHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHH
Confidence 456778887554332 11111 344555555544 5789999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc
Q 043471 91 KNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR 170 (485)
Q Consensus 91 ~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (485)
.++++. +++++++|+.. ++ ++++||+|+++.+++|++.+....+++++.++|+|||++++.......... ..
T Consensus 80 ~a~~~~----~~~~~~~d~~~--~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~ 151 (211)
T 3e23_A 80 EASRRL----GRPVRTMLFHQ--LD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR-DK 151 (211)
T ss_dssp HHHHHH----TSCCEECCGGG--CC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE-CT
T ss_pred HHHHhc----CCceEEeeecc--CC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc-cc
Confidence 999986 57889999988 44 678999999999999999666889999999999999999998654332211 11
Q ss_pred CCCCCCCCChhHHHHHhhhcc-eecC
Q 043471 171 KHNPTHYREPRFYSKVFKECQ-IQDA 195 (485)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~-~~~~ 195 (485)
......+.+.+.+.++++++| |...
T Consensus 152 ~~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 152 LARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp TSCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred cchhccCCCHHHHHHHHHhCCCcEEE
Confidence 122234458899999999999 8543
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=162.21 Aligned_cols=148 Identities=21% Similarity=0.309 Sum_probs=120.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..++.. ++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++. ++.+..+|+..++ ++++
T Consensus 32 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~d~~~~~-~~~~ 102 (211)
T 3e23_A 32 ATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-----GRPVRTMLFHQLD-AIDA 102 (211)
T ss_dssp HHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-----TSCCEECCGGGCC-CCSC
T ss_pred HHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-----CCceEEeeeccCC-CCCc
Confidence 344455554 356789999999999999999988 789999999999999999987 5778889999888 6789
Q ss_pred ccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCC-CeE
Q 043471 350 FDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAG-FVD 426 (485)
Q Consensus 350 fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~ 426 (485)
||+|++..+++|++ ++..++++++++|||||++++............ ......+++.+++.++|+++| |++
T Consensus 103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~aG~f~~ 176 (211)
T 3e23_A 103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDK------LARYYNYPSEEWLRARYAEAGTWAS 176 (211)
T ss_dssp EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECT------TSCEECCCCHHHHHHHHHHHCCCSE
T ss_pred EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccc------cchhccCCCHHHHHHHHHhCCCcEE
Confidence 99999999999998 888999999999999999999865443221100 011235679999999999999 999
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
+.+...
T Consensus 177 ~~~~~~ 182 (211)
T 3e23_A 177 VAVESS 182 (211)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 987654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=171.41 Aligned_cols=153 Identities=24% Similarity=0.336 Sum_probs=121.2
Q ss_pred CCCCCCEEEEECCCCChhHHHHh-hc-CCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCCCCccEEEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMA-DK-FDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~-~~-~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
.++++.+|||||||+|.++..++ .. .+.+|+|+|+|+.+++.|+++....+ .+++++++|+.+++++ ++||+|++
T Consensus 115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTS 193 (305)
T ss_dssp HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEE
Confidence 46778899999999999999985 22 26799999999999999999987443 4599999999999887 99999999
Q ss_pred cccccccCCHHH---HHHHHHhcCCCCcEEEEEecccCCCCCCh-------------hHHHHHHhc----C-CCCCCHHH
Q 043471 356 RDTILHIQDKPA---LFKSFFKWLKPGGTVLISDYCKSFGTPSV-------------EFSEYIKQR----G-YDLHDVKS 414 (485)
Q Consensus 356 ~~~~~~~~~~~~---~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------------~~~~~~~~~----~-~~~~~~~~ 414 (485)
+.+++|++++.. ++++++++|||||++++.++......... ....+.... + ..+++.++
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999999988776 79999999999999999986653321100 011111111 1 14578999
Q ss_pred HHHHHHhCCCeEEEEeecc
Q 043471 415 YGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 415 ~~~~l~~aGf~~~~~~~~~ 433 (485)
+.++|+++||+++.+....
T Consensus 274 ~~~~l~~aGF~~v~~~~~~ 292 (305)
T 3ocj_A 274 TRAQLEEAGFTDLRFEDDR 292 (305)
T ss_dssp HHHHHHHTTCEEEEEECCT
T ss_pred HHHHHHHCCCEEEEEEccc
Confidence 9999999999999887543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.3e-19 Score=175.87 Aligned_cols=151 Identities=23% Similarity=0.311 Sum_probs=122.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc-------C-C-CCCeEEEEccCCCC------
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI-------G-L-KCSVEFEVADCTKK------ 343 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~-------~-~-~~~i~~~~~d~~~~------ 343 (485)
..++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++. + . ..+++++.+|+.++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 4578899999999999999999875 5699999999999999998864 2 2 15899999999987
Q ss_pred CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH--HHHHhcCCCCCCHHHHHHHHHh
Q 043471 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS--EYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
++++++||+|+++.+++|++++..++++++++|||||++++.++............ ..........++.+++.++|++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 240 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAE 240 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999987655433322111 1112222345788999999999
Q ss_pred CCCeEEEEee
Q 043471 422 AGFVDIIAED 431 (485)
Q Consensus 422 aGf~~~~~~~ 431 (485)
+||+++++..
T Consensus 241 aGF~~v~~~~ 250 (383)
T 4fsd_A 241 AGFRDVRLVS 250 (383)
T ss_dssp TTCCCEEEEE
T ss_pred CCCceEEEEe
Confidence 9999876544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=158.19 Aligned_cols=142 Identities=23% Similarity=0.223 Sum_probs=119.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
.+++.+.+.++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.++++. .++++..+| .++++++||+|
T Consensus 8 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~----~~v~~~~~d---~~~~~~~~D~v 79 (170)
T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKF----DSVITLSDP---KEIPDNSVDFI 79 (170)
T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHHC----TTSEEESSG---GGSCTTCEEEE
T ss_pred HHHHhcCcCCCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHhC----CCcEEEeCC---CCCCCCceEEE
Confidence 45556667788899999999999999999885 49999999999999999982 378999998 56778899999
Q ss_pred EEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 354 YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
++..+++|++++..+++++.++|||||++++.++.......... ....++.+++.++++ ||+++......
T Consensus 80 ~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~--Gf~~~~~~~~~ 149 (170)
T 3i9f_A 80 LFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP--------LSIRMDEKDYMGWFS--NFVVEKRFNPT 149 (170)
T ss_dssp EEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC--------GGGCCCHHHHHHHTT--TEEEEEEECSS
T ss_pred EEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCch--------HhhhcCHHHHHHHHh--CcEEEEccCCC
Confidence 99999999999999999999999999999999876554322211 123468999999999 99999887655
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=163.47 Aligned_cols=162 Identities=18% Similarity=0.257 Sum_probs=126.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC--CCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK--KTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD 351 (485)
.+++.+. .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++. .++..+|+.+ .++++++||
T Consensus 24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~------~~~~~~d~~~~~~~~~~~~fD 95 (230)
T 3cc8_A 24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETMDMPYEEEQFD 95 (230)
T ss_dssp HHHTTCC-TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS------SEEEESCTTTCCCCSCTTCEE
T ss_pred HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC------CcEEEcchhhcCCCCCCCccC
Confidence 4555554 67889999999999999999988 789999999999999998764 3688899876 567778999
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH------------HhcCCCCCCHHHHHHHH
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI------------KQRGYDLHDVKSYGQML 419 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l 419 (485)
+|++..+++|++++..+++++.++|+|||++++..+..... ....... .+.+...++.+++.+++
T Consensus 96 ~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (230)
T 3cc8_A 96 CVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMF 172 (230)
T ss_dssp EEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHH
T ss_pred EEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHH
Confidence 99999999999999999999999999999999987543211 0011111 11123567899999999
Q ss_pred HhCCCeEEEEeecchHHHHHHHHHHHHH
Q 043471 420 KDAGFVDIIAEDRTEQFVQVLQRELDAI 447 (485)
Q Consensus 420 ~~aGf~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
+++||+++.+......+ .....|...+
T Consensus 173 ~~~Gf~~~~~~~~~~~~-~~~~~~~~~l 199 (230)
T 3cc8_A 173 LKAGYSISKVDRVYVDH-KMYEPLIEEL 199 (230)
T ss_dssp HHTTEEEEEEEEEECCC-GGGHHHHHHH
T ss_pred HHcCCeEEEEEecccCh-hhccchHHHH
Confidence 99999999887766544 3444454444
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=166.89 Aligned_cols=144 Identities=20% Similarity=0.213 Sum_probs=117.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-CCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-KCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++.... ..++++..+|+.++++++++||+|++..+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 57899999999999999999886569999999999999999987643 34688999999988887789999999999999
Q ss_pred cCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 362 IQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 362 ~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
+++. ..+++++.++|||||++++.+...... ..+.. ..+....+.+++.++|+++||+++.....
T Consensus 159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 225 (241)
T 2ex4_A 159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---VILDD---VDSSVCRDLDVVRRIICSAGLSLLAEERQ 225 (241)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---EEEET---TTTEEEEBHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---ceecc---cCCcccCCHHHHHHHHHHcCCeEEEeeec
Confidence 9874 489999999999999999987655431 00100 01112347899999999999999988654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=169.09 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=120.5
Q ss_pred ccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccC
Q 043471 37 DLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTS 111 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~ 111 (485)
....+....+++.+. ..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++... .++++++++|+.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence 345566677787776 6678999999999999999999985 4999999999999999987532 2469999999988
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSK 185 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 185 (485)
+++++++||+|+++.+++|+ + ...+++++.++|+|||++++.++.......... ... ..+.+.+.+.+
T Consensus 108 --~~~~~~~fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 181 (267)
T 3kkz_A 108 --LPFRNEELDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAY-PEIDTIPNQVA 181 (267)
T ss_dssp --CCCCTTCEEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHC-TTCEEHHHHHH
T ss_pred --CCCCCCCEEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhC-CCCCCHHHHHH
Confidence 56678999999999999999 4 568999999999999999998876432211110 011 13346778899
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
.++++||...
T Consensus 182 ~l~~aGf~~v 191 (267)
T 3kkz_A 182 KIHKAGYLPV 191 (267)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHCCCEEE
Confidence 9999999653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-19 Score=162.21 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=115.8
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 118 (485)
....++..+...+ .+|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++.... .+++++++|+.+++ ++
T Consensus 55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~ 130 (235)
T 3lcc_A 55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---PT 130 (235)
T ss_dssp HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC---CS
T ss_pred HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC---CC
Confidence 3344455444433 59999999999999999999999999999999999999987642 36999999998843 45
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
++||+|+++.+++|++++....+++++.++|+|||++++.+...... ...+.+..+.+.+...++++||..
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~ 201 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-----VGGPPYKVDVSTFEEVLVPIGFKA 201 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-----CSCSSCCCCHHHHHHHHGGGTEEE
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-----CCCCCccCCHHHHHHHHHHcCCeE
Confidence 69999999999999996668899999999999999999976654321 112333357889999999999954
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=167.91 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=95.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+.+..+.+.+..+ .+.+|||||||+|..+..|++.+.+|+|+|+|+.|++.|++. ++++++++|+++ ++++
T Consensus 25 yp~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~----~~v~~~~~~~e~--~~~~ 96 (257)
T 4hg2_A 25 YPRALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH----PRVTYAVAPAED--TGLP 96 (257)
T ss_dssp CCHHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC----TTEEEEECCTTC--CCCC
T ss_pred cHHHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc----CCceeehhhhhh--hccc
Confidence 44555555555543 356899999999999999999999999999999999877653 689999999998 6788
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++||+|+|..++||++. ++++++++|+|||||.|++....
T Consensus 97 ~~sfD~v~~~~~~h~~~~---~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 97 PASVDVAIAAQAMHWFDL---DRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp SSCEEEEEECSCCTTCCH---HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcccEEEEeeehhHhhH---HHHHHHHHHHcCCCCEEEEEECC
Confidence 999999999999998863 47999999999999999987654
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=167.80 Aligned_cols=156 Identities=14% Similarity=0.184 Sum_probs=124.6
Q ss_pred cCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeecc
Q 043471 35 ASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVT 110 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~ 110 (485)
...........+++.+...++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++... .++++++++|+.
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~ 96 (256)
T 1nkv_A 17 HNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAA 96 (256)
T ss_dssp SSSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCT
T ss_pred cCCCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChH
Confidence 34456677788888888888999999999999999999987 78999999999999999987532 247999999998
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---c---CCCCCCCCChhHHH
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---R---KHNPTHYREPRFYS 184 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~ 184 (485)
+ +++ +++||+|+|..+++|+++ ...+++++.++|||||.+++.++......... . ......+.+.+.+.
T Consensus 97 ~--~~~-~~~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T 1nkv_A 97 G--YVA-NEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLV 171 (256)
T ss_dssp T--CCC-SSCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHH
T ss_pred h--CCc-CCCCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHH
Confidence 8 555 789999999999999987 56999999999999999999876543221111 0 01112344778899
Q ss_pred HHhhhcceecC
Q 043471 185 KVFKECQIQDA 195 (485)
Q Consensus 185 ~~~~~~~~~~~ 195 (485)
..++++||...
T Consensus 172 ~~l~~aGf~~~ 182 (256)
T 1nkv_A 172 GAFDDLGYDVV 182 (256)
T ss_dssp HHHHTTTBCCC
T ss_pred HHHHHCCCeeE
Confidence 99999999553
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=169.95 Aligned_cols=149 Identities=19% Similarity=0.223 Sum_probs=119.6
Q ss_pred hhHHHhccC----CCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCC
Q 043471 42 ERPEVLSLL----PPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPD 113 (485)
Q Consensus 42 ~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~ 113 (485)
....+++.+ ...++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++.. ..++++++++|+.+
T Consensus 66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-- 143 (297)
T 2o57_A 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE-- 143 (297)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS--
T ss_pred HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc--
Confidence 345677777 6678899999999999999999987 8899999999999999988752 23579999999988
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------cCCCCCCCCChhHHHHHh
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------RKHNPTHYREPRFYSKVF 187 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 187 (485)
+++++++||+|++..+++|+++ ...+++++.++|||||.+++.++......... .........+.+.+...+
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLA 221 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHH
T ss_pred CCCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 6678899999999999999998 67999999999999999999877543221110 011122344778899999
Q ss_pred hhcceec
Q 043471 188 KECQIQD 194 (485)
Q Consensus 188 ~~~~~~~ 194 (485)
+++||..
T Consensus 222 ~~aGf~~ 228 (297)
T 2o57_A 222 KECGLVT 228 (297)
T ss_dssp HHTTEEE
T ss_pred HHCCCeE
Confidence 9999854
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.2e-19 Score=159.62 Aligned_cols=159 Identities=14% Similarity=0.169 Sum_probs=116.7
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCC------CCeEEEEccCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLK------CSVEFEVADCTKK 343 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~------~~i~~~~~d~~~~ 343 (485)
....+++.+...++.+|||+|||+|.++..+++..+ .+++|+|+|+.+++.|++++...+ .++++.++|+...
T Consensus 17 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~ 96 (217)
T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccc
Confidence 344555555556778999999999999999998753 699999999999999999976332 1799999999877
Q ss_pred CCCCCCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCC-CCChhHHHHHHhcCCCCCCHHHHH----
Q 043471 344 TYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFG-TPSVEFSEYIKQRGYDLHDVKSYG---- 416 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---- 416 (485)
+.++++||+|++..+++|+++. ..+++++.++|||||.++++....... .............+...++.+++.
T Consensus 97 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 176 (217)
T 3jwh_A 97 DKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQNWAN 176 (217)
T ss_dssp CGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHHHHHH
T ss_pred cccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHHHHHH
Confidence 7777899999999999999855 899999999999999777764321100 000000001111222346788888
Q ss_pred HHHHhCCCeEEEE
Q 043471 417 QMLKDAGFVDIIA 429 (485)
Q Consensus 417 ~~l~~aGf~~~~~ 429 (485)
++++++||++...
T Consensus 177 ~~~~~~Gf~v~~~ 189 (217)
T 3jwh_A 177 KITERFAYNVQFQ 189 (217)
T ss_dssp HHHHHSSEEEEEC
T ss_pred HHHHHcCceEEEE
Confidence 8999999987543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=158.23 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=116.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC--C----CCeEEEEccCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL--K----CSVEFEVADCTKKT 344 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~--~----~~i~~~~~d~~~~~ 344 (485)
...+++.+...++.+|||||||+|.++..+++... .+++|+|+|+.+++.|++++... . .++++..+|+...+
T Consensus 18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 97 (219)
T 3jwg_A 18 LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD 97 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred HHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence 34455555556778999999999999999998753 69999999999999999987532 2 17999999998887
Q ss_pred CCCCCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHhcCCCCCCHHHHH----H
Q 043471 345 YPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRGYDLHDVKSYG----Q 417 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~ 417 (485)
+++++||+|++..+++|+++. ..+++++.++|||||.++++......... ...........+...++.+++. +
T Consensus 98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 177 (219)
T 3jwg_A 98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQTWAVK 177 (219)
T ss_dssp GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHHHHHHH
T ss_pred cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHHHHHHH
Confidence 777899999999999999855 79999999999999966665432211110 0011111112233446888888 8
Q ss_pred HHHhCCCeEEEE
Q 043471 418 MLKDAGFVDIIA 429 (485)
Q Consensus 418 ~l~~aGf~~~~~ 429 (485)
+++++||++...
T Consensus 178 l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 178 VAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHCCcEEEEE
Confidence 899999977544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.4e-19 Score=160.65 Aligned_cols=147 Identities=20% Similarity=0.291 Sum_probs=120.4
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~ 117 (485)
...+++.+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++... .++++++++|+.+ ++++
T Consensus 26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~ 103 (219)
T 3dh0_A 26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK--IPLP 103 (219)
T ss_dssp HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTB--CSSC
T ss_pred HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccccc--CCCC
Confidence 3567777788889999999999999999999986 6999999999999999987532 2479999999988 5567
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
+++||+|+++.+++|+++ ...+++++.++|+|||.+++.++...... .........+.+.+...++++||....
T Consensus 104 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 177 (219)
T 3dh0_A 104 DNTVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERD---KGPPPEEVYSEWEVGLILEDAGIRVGR 177 (219)
T ss_dssp SSCEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCS---SSCCGGGSCCHHHHHHHHHHTTCEEEE
T ss_pred CCCeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccc---cCCchhcccCHHHHHHHHHHCCCEEEE
Confidence 889999999999999987 66999999999999999999876654331 111122334788999999999996533
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.8e-20 Score=168.76 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=115.6
Q ss_pred hHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+...++ ..++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++ ++++++|+.+...++++++|
T Consensus 29 ~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~~~~~~f 102 (240)
T 3dli_A 29 KARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKSLPDKYL 102 (240)
T ss_dssp HHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT------SEEECSCHHHHHHTSCTTCB
T ss_pred HHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh------cceeeccHHHHhhhcCCCCe
Confidence 334444444 34578999999999999999999999999999999999999885 78999998773225678999
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---cCCCCCCCCChhHHHHHhhhcceecC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---RKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
|+|+++.+++|++++....+++++.++|||||++++..+......... .........+.+.+..+++++||...
T Consensus 103 D~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 103 DGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDV 179 (240)
T ss_dssp SEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEE
T ss_pred eEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEE
Confidence 999999999999976678999999999999999999877643211100 01122334477899999999999643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=170.43 Aligned_cols=162 Identities=20% Similarity=0.274 Sum_probs=124.3
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKT 344 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~ 344 (485)
......+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ .+++++++|+.+++
T Consensus 69 ~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~ 146 (299)
T 3g2m_A 69 TSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA 146 (299)
T ss_dssp HHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred cHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence 3556677777765544 9999999999999999988 7899999999999999999987654 58999999999988
Q ss_pred CCCCCccEEEEc-ccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCC----CC-ChhHHH-----H-H--------
Q 043471 345 YPENSFDVIYSR-DTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFG----TP-SVEFSE-----Y-I-------- 402 (485)
Q Consensus 345 ~~~~~fD~i~~~-~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~-~~~~~~-----~-~-------- 402 (485)
+ +++||+|++. .+++|++ +...+|++++++|||||++++..+..... .. ...+.. + +
T Consensus 147 ~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 147 L-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp C-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred c-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 7 6899999965 6667665 46899999999999999999997654321 00 000000 0 0
Q ss_pred -------------------HhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 403 -------------------KQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 403 -------------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
......+++.+++.++|+++||+++.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~ 275 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA 275 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence 0011235699999999999999999987654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-19 Score=166.30 Aligned_cols=144 Identities=19% Similarity=0.244 Sum_probs=114.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcc-ccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRD-TIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~-~~~ 360 (485)
+++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. +++++++|+.++++ +++||+|++.. +++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRNP----DAVLHHGDMRDFSL-GRRFSAVTCMFSSIG 122 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred CCCCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC----CCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence 45689999999999999999988 6799999999999999999864 78999999999887 68999999998 999
Q ss_pred ccC---CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH---------------------------------------
Q 043471 361 HIQ---DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF--------------------------------------- 398 (485)
Q Consensus 361 ~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~--------------------------------------- 398 (485)
|++ +...++++++++|||||++++..+...........
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRG 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCc
Confidence 995 56688999999999999999975433221100000
Q ss_pred -HHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 399 -SEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
..+.......+++.+++.++|+++||+++.+..
T Consensus 203 ~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~ 236 (263)
T 3pfg_A 203 ITHHEESHRITLFTREQYERAFTAAGLSVEFMPG 236 (263)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred EEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeC
Confidence 000000113467899999999999999988743
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-19 Score=165.68 Aligned_cols=147 Identities=21% Similarity=0.332 Sum_probs=119.5
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
......+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.++++. ++++++++|+.. +++ ++
T Consensus 43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~--~~~-~~ 116 (279)
T 3ccf_A 43 WQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY---PHLHFDVADARN--FRV-DK 116 (279)
T ss_dssp SSSCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSCEEECCTTT--CCC-SS
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC---CCCEEEECChhh--CCc-CC
Confidence 344556777777778899999999999999999998899999999999999999876 589999999988 444 57
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc---------------cccCCCCCCCCChhHHH
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD---------------SKRKHNPTHYREPRFYS 184 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ 184 (485)
+||+|+++.+++|+++ ...+++++.++|+|||++++..+....... ......+..+.+.+.+.
T Consensus 117 ~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (279)
T 3ccf_A 117 PLDAVFSNAMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYV 194 (279)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHH
T ss_pred CcCEEEEcchhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCccccCcCceeCCCHHHHH
Confidence 9999999999999988 569999999999999999998765322100 00112233455788899
Q ss_pred HHhhhcceec
Q 043471 185 KVFKECQIQD 194 (485)
Q Consensus 185 ~~~~~~~~~~ 194 (485)
.+++++||..
T Consensus 195 ~~l~~aGf~~ 204 (279)
T 3ccf_A 195 NILEKQGFDV 204 (279)
T ss_dssp HHHHHHTEEE
T ss_pred HHHHHcCCEE
Confidence 9999999965
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=166.24 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=120.1
Q ss_pred ccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccC
Q 043471 37 DLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTS 111 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~ 111 (485)
....+....+++.+. ..++.+|||||||+|..+..+++.+. +|+|+|+|+.+++.|+++... ..+++++++|+.+
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 107 (257)
T 3f4k_A 28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDN 107 (257)
T ss_dssp SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 344566677777774 56678999999999999999999855 999999999999999987532 2359999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC-----CCCCCCCChhHHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-----HNPTHYREPRFYSKV 186 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 186 (485)
+++++++||+|+++.+++|+ + ...+++++.++|+|||++++.++........... .......+.+.+...
T Consensus 108 --~~~~~~~fD~v~~~~~l~~~-~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (257)
T 3f4k_A 108 --LPFQNEELDLIWSEGAIYNI-G--FERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDK 182 (257)
T ss_dssp --CSSCTTCEEEEEEESCSCCC-C--HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHH
T ss_pred --CCCCCCCEEEEEecChHhhc-C--HHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHH
Confidence 66778999999999999999 4 5689999999999999999988653322111100 001123467889999
Q ss_pred hhhcceecCC
Q 043471 187 FKECQIQDAS 196 (485)
Q Consensus 187 ~~~~~~~~~~ 196 (485)
++++||....
T Consensus 183 l~~aGf~~v~ 192 (257)
T 3f4k_A 183 MERAGYTPTA 192 (257)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCeEEE
Confidence 9999996543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=169.19 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=118.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
......+.+++.++..++.+|||||||+|..+..+++.+.+|+|+|+|+.|++.|+++. +++++++|+.+ ++++
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~--~~~~ 91 (261)
T 3ege_A 18 PDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP----QVEWFTGYAEN--LALP 91 (261)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----TEEEECCCTTS--CCSC
T ss_pred ccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----CCEEEECchhh--CCCC
Confidence 34466778888888888999999999999999999999999999999999998877653 89999999988 6678
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-CC-------CCCCCCChhHHHHHhhh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-KH-------NPTHYREPRFYSKVFKE 189 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~ 189 (485)
+++||+|++..+++|+++ ...++++++++|| ||++++.++.......... .. ....+...+.+. .+++
T Consensus 92 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 167 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQE 167 (261)
T ss_dssp TTCBSEEEEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHH
T ss_pred CCCEeEEEEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHH
Confidence 899999999999999987 6799999999999 9988887765432211110 00 112334566777 9999
Q ss_pred cceecCC
Q 043471 190 CQIQDAS 196 (485)
Q Consensus 190 ~~~~~~~ 196 (485)
+||....
T Consensus 168 aGF~~v~ 174 (261)
T 3ege_A 168 NTKRRVE 174 (261)
T ss_dssp HHCSEEE
T ss_pred cCCCcee
Confidence 9995543
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=159.55 Aligned_cols=149 Identities=15% Similarity=0.109 Sum_probs=115.0
Q ss_pred HHHHHHHc-CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC------------------CCCC
Q 043471 272 TKEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG------------------LKCS 332 (485)
Q Consensus 272 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~------------------~~~~ 332 (485)
+.+.+..+ ...++.+|||+|||+|..+..|++. |.+|+|+|+|+.|++.|+++... ...+
T Consensus 56 l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (252)
T 2gb4_A 56 LKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS 134 (252)
T ss_dssp HHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence 33444332 3457789999999999999999988 88999999999999999877531 2357
Q ss_pred eEEEEccCCCCCCCC-CCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCC
Q 043471 333 VEFEVADCTKKTYPE-NSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409 (485)
Q Consensus 333 i~~~~~d~~~~~~~~-~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (485)
+++.++|+.++++++ ++||+|++..+++|++ ++..+++++.++|||||++++.+........ ......
T Consensus 135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~---------~g~~~~ 205 (252)
T 2gb4_A 135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH---------AGPPFY 205 (252)
T ss_dssp EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC---------CCSSCC
T ss_pred eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC---------CCCCCC
Confidence 999999999988754 8999999999999995 4667999999999999999765443221110 001112
Q ss_pred CCHHHHHHHHHhCCCeEEEEee
Q 043471 410 HDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+.+++.+++.. +|+++..+.
T Consensus 206 ~~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 206 VPSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CCHHHHHHHHTT-TEEEEEEEE
T ss_pred CCHHHHHHHhhC-CeEEEEEec
Confidence 578999999988 599887764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-19 Score=163.02 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=122.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+....+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.. ..++++++++|+.. ++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~ 84 (239)
T 1xxl_A 7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES--LPFP 84 (239)
T ss_dssp HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB--CCSC
T ss_pred CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccccc--CCCC
Confidence 3555677788888899999999999999999999999999999999999999988753 22479999999987 6677
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------cCCCCCCCCChhHHHHHhh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------RKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 188 (485)
+++||+|++..+++|+++ ...+++++.++|+|||.+++.+.......... .........+.+.+..+++
T Consensus 85 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 162 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFS 162 (239)
T ss_dssp TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHH
T ss_pred CCcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHHHHHHhccccccCCCCHHHHHHHHH
Confidence 899999999999999988 66999999999999999999876543221100 0112233347788999999
Q ss_pred hcceec
Q 043471 189 ECQIQD 194 (485)
Q Consensus 189 ~~~~~~ 194 (485)
++||..
T Consensus 163 ~aGf~~ 168 (239)
T 1xxl_A 163 ANQLAY 168 (239)
T ss_dssp HTTEEE
T ss_pred HCCCcE
Confidence 999964
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.3e-19 Score=166.45 Aligned_cols=149 Identities=19% Similarity=0.252 Sum_probs=120.1
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~ 117 (485)
....+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++++++|+.+ ++++
T Consensus 49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~ 126 (273)
T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMD--LPFE 126 (273)
T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCSC
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcccc--CCCC
Confidence 3456778888888999999999999999999986 78999999999999999987532 2479999999988 6677
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------cCCCCCCCCChhHHHHHhh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------RKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 188 (485)
+++||+|++..+++|+++ ...+++++.++|+|||.+++.++......... .........+.+.+...++
T Consensus 127 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 204 (273)
T 3bus_A 127 DASFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVR 204 (273)
T ss_dssp TTCEEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred CCCccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHH
Confidence 899999999999999988 56999999999999999999886543221110 0011233457788999999
Q ss_pred hcceec
Q 043471 189 ECQIQD 194 (485)
Q Consensus 189 ~~~~~~ 194 (485)
++||..
T Consensus 205 ~aGf~~ 210 (273)
T 3bus_A 205 QAELVV 210 (273)
T ss_dssp HTTCEE
T ss_pred HcCCeE
Confidence 999854
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=163.82 Aligned_cols=152 Identities=21% Similarity=0.306 Sum_probs=117.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC---CCCC-C
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK---TYPE-N 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~---~~~~-~ 348 (485)
..+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++ .++.+...|+.++ ++.. .
T Consensus 42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~ 115 (227)
T 3e8s_A 42 QAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGK 115 (227)
T ss_dssp HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCC
T ss_pred HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-----cccccchhhHHhhcccccccCC
Confidence 45566665566789999999999999999988 78999999999999999987 2677888877665 4443 4
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCCh---h-----HHHHH---HhcCCCCCCHHHHHH
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---E-----FSEYI---KQRGYDLHDVKSYGQ 417 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~-----~~~~~---~~~~~~~~~~~~~~~ 417 (485)
+||+|++..+++ ..++..++++++++|||||++++.++......... . +..+. .+....+++.+++.+
T Consensus 116 ~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T 3e8s_A 116 DYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLN 194 (227)
T ss_dssp CEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHH
T ss_pred CccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHH
Confidence 599999999999 78999999999999999999999987553322110 0 00000 011124568999999
Q ss_pred HHHhCCCeEEEEee
Q 043471 418 MLKDAGFVDIIAED 431 (485)
Q Consensus 418 ~l~~aGf~~~~~~~ 431 (485)
+|+++||+++.+..
T Consensus 195 ~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 195 ALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHTTEEEEEEEC
T ss_pred HHHHcCCeEEEEec
Confidence 99999999998865
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-19 Score=177.03 Aligned_cols=303 Identities=11% Similarity=0.084 Sum_probs=177.2
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
....+++.+...++.+|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++........+...+... +++++++|
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~--l~~~~~~f 172 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADD--VRRTEGPA 172 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHH--HHHHHCCE
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhHhh--cccCCCCE
Confidence 4456777788788899999999999999999999999999999999999999872110111233344444 45567899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC---CccccC-CCCCCCCChhHHHHHhhhcceecCCC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS---GDSKRK-HNPTHYREPRFYSKVFKECQIQDASG 197 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 197 (485)
|+|+++.+++|+++ ...++++++++|||||++++..+..... ...... .....+.+.+.+..+++++||....-
T Consensus 173 D~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~ 250 (416)
T 4e2x_A 173 NVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDV 250 (416)
T ss_dssp EEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEE
T ss_pred EEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEE
Confidence 99999999999997 6799999999999999999986542110 000011 12334457889999999999965432
Q ss_pred CceeEEEeeeeecceEEeecCc---hhHHHHHHHHhhc---cCchhHHHhhhhhhccccchhHHHHHhccccccCCchHH
Q 043471 198 NSFELSLVGYKCIGAYVKNKKN---QNQICWIWQKVRS---QNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIET 271 (485)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (485)
.... .. ...+......... ............. ...+.|..|........ +.
T Consensus 251 ~~~~--~~-~g~l~~~~~~~~~~~~~~~v~~~l~~e~~~gl~~~~~y~~f~~~~~~~~--------------------~~ 307 (416)
T 4e2x_A 251 QRLP--VH-GGEVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIR--------------------DE 307 (416)
T ss_dssp EEEC--GG-GSEEEEEEEETTSSCCCHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHH--------------------HH
T ss_pred EEcc--CC-CCEEEEEEEeCCCCCCchhHHHHHHHHHHCCCCChHHHHHHHHHHHHHH--------------------HH
Confidence 1111 00 1111122222111 1112222221111 11122333332221111 12
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHH-HHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDF-YMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~-~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...++..+. ..|.+|+-.|+|....+. ..+... ..-...+|.+|.-... .++ +.++.++..+.. ....
T Consensus 308 l~~~l~~~k-~~gk~v~~yGa~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~---~~~--g~~ipi~~p~~~----~~~~ 377 (416)
T 4e2x_A 308 LTALLHRLR-AEGRSVVGYGATAKSATVTNFCGIGPDLVHSVYDTTPDKQNR---LTP--GAHIPVRPASAF----SDPY 377 (416)
T ss_dssp HHHHHHHHH-HTTCCEEEECCCSHHHHHHHHHTCCTTTSCCEEESCGGGTTE---ECT--TTCCEEEEGGGC----CSSC
T ss_pred HHHHHHHHH-HcCCeEEEEccccHHHHHHHhcCCCcceeeEEEeCCccccCc---cCC--CCCCcCCCHHHH----hhcC
Confidence 223333332 347789999987643332 222211 1223457887753110 111 224555554432 2355
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.|.|+.... .+ ..++++++...+.-||++++.
T Consensus 378 ~d~vl~~~~-~~---~~ei~~~~~~~~~~g~~~~~~ 409 (416)
T 4e2x_A 378 PDYALLFAW-NH---AEEIMAKEQEFHQAGGRWILY 409 (416)
T ss_dssp CSEEEESCG-GG---HHHHHHHCHHHHHTTCEEEEC
T ss_pred CCEEEEecc-hh---HHHHHHHHHHHHhcCCEEEEE
Confidence 787665321 11 567778888888899999875
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-19 Score=165.68 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=105.5
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCC-----------------------------
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE----------------------------- 100 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~----------------------------- 100 (485)
+..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|++.....+
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 456788999999999999888887775 79999999999999987643211
Q ss_pred --CeE-EEEeeccCCC-CC-CCCCCeeEEEhhhhhhccC--hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCC
Q 043471 101 --NVK-FMCADVTSPD-LT-FSEDSVDMMFSNWLLMYLS--DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHN 173 (485)
Q Consensus 101 --~~~-~~~~d~~~~~-~~-~~~~~~D~v~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~ 173 (485)
++. ++++|+.+.. ++ ...++||+|+++.++||+. .+.+..++++++++|||||.++++...............
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 233 8899998731 11 2357999999999999963 244789999999999999999998653221100000011
Q ss_pred CCCCCChhHHHHHhhhcceecC
Q 043471 174 PTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
..+..+.+.+.+.+.++||...
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEE
Confidence 2233478899999999999543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.3e-19 Score=159.10 Aligned_cols=114 Identities=21% Similarity=0.346 Sum_probs=100.2
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.+...+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....++++++++|+.+.+ ++++||+|
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~fD~v 118 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFS---TAELFDLI 118 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCC---CSCCEEEE
T ss_pred HHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCC---CCCCccEE
Confidence 334456667788999999999999999999999999999999999999999876678999999998843 57899999
Q ss_pred EhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 125 FSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 125 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++.+++|+++ ....++++++.++|+|||.++++++.
T Consensus 119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999999986 44678999999999999999997653
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=169.10 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=106.6
Q ss_pred CCCCCEEEEECCCCChhHHHH----hhcC-CCE--EEEEeCCHHHHHHHHHHhcCC--CCCeEE--EEccCCCCC-----
Q 043471 281 LKPGQKVLDVGCGIGGGDFYM----ADKF-DVH--VVGIDLSINMISFALERAIGL--KCSVEF--EVADCTKKT----- 344 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l----~~~~-~~~--v~g~D~s~~~~~~a~~~~~~~--~~~i~~--~~~d~~~~~----- 344 (485)
..++.+|||||||+|.++..+ +.+. +.. ++|+|+|+.|++.|++++... ..++.+ ..+++.+++
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence 356789999999999766533 3332 454 499999999999999987532 124444 444544332
Q ss_pred -CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHh----cCCCCCCHHHHHHHH
Q 043471 345 -YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQ----RGYDLHDVKSYGQML 419 (485)
Q Consensus 345 -~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l 419 (485)
+++++||+|++..+++|++|+..+|++++|+|||||++++....... .....+..+... ....+.+.+++.++|
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-GWDKLWKKYGSRFPQDDLCQYITSDDLTQML 208 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-HHHHHHHHHGGGSCCCTTCCCCCHHHHHHHH
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc-cHHHHHHHHHHhccCCCcccCCCHHHHHHHH
Confidence 56789999999999999999999999999999999999998654211 101112222211 123567899999999
Q ss_pred HhCCCeEEEE
Q 043471 420 KDAGFVDIIA 429 (485)
Q Consensus 420 ~~aGf~~~~~ 429 (485)
+++||+++..
T Consensus 209 ~~aGf~~~~~ 218 (292)
T 2aot_A 209 DNLGLKYECY 218 (292)
T ss_dssp HHHTCCEEEE
T ss_pred HHCCCceEEE
Confidence 9999998764
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-18 Score=153.79 Aligned_cols=148 Identities=19% Similarity=0.254 Sum_probs=119.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.+++.+...++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+ .++++..+|+.+.++ +++||+
T Consensus 23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~ 100 (199)
T 2xvm_A 23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDF 100 (199)
T ss_dssp HHHHHTTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEE
T ss_pred HHHHHhhccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceE
Confidence 4556666667789999999999999999988 7899999999999999999875332 269999999999887 789999
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|++..+++|++ +...+++++.++|||||++++.+.......... ......++.+++.+++++ |+++..+
T Consensus 101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-------VGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-------SCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-------CCCCCccCHHHHHHHhcC--CeEEEec
Confidence 99999999997 889999999999999999888765443322111 111234578899999987 9998876
Q ss_pred ec
Q 043471 431 DR 432 (485)
Q Consensus 431 ~~ 432 (485)
..
T Consensus 172 ~~ 173 (199)
T 2xvm_A 172 ED 173 (199)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=161.25 Aligned_cols=141 Identities=21% Similarity=0.318 Sum_probs=112.6
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-------CeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-------NVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+ +++++++|+.. +++++++||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS--LSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS--CCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc--cCCCCCceeEEEE
Confidence 57899999999999999999999999999999999999999865422 58999999988 5567899999999
Q ss_pred hhhhhccChH-HHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-------------------cC------CCCCCCCCh
Q 043471 127 NWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-------------------RK------HNPTHYREP 180 (485)
Q Consensus 127 ~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------------~~------~~~~~~~~~ 180 (485)
+.+++|+++. ....+++++.++|+|||.+++.++......... .. .......+.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTE 187 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCH
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCCH
Confidence 9999999763 356899999999999999999876542111000 00 001234578
Q ss_pred hHHHHHhhhcceecCC
Q 043471 181 RFYSKVFKECQIQDAS 196 (485)
Q Consensus 181 ~~~~~~~~~~~~~~~~ 196 (485)
+.+.++++++||....
T Consensus 188 ~~l~~ll~~aGf~~~~ 203 (235)
T 3sm3_A 188 KELVFLLTDCRFEIDY 203 (235)
T ss_dssp HHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 9999999999996544
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=158.38 Aligned_cols=146 Identities=16% Similarity=0.222 Sum_probs=118.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
......+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++. ++++++++|+.+ ++ +
T Consensus 19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~--~~-~ 92 (259)
T 2p35_A 19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLAT--WK-P 92 (259)
T ss_dssp GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTT--CC-C
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhh--cC-c
Confidence 344567888888888899999999999999999998 789999999999999999883 689999999988 44 6
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC-------------ccc--cC--CCCCCCCCh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG-------------DSK--RK--HNPTHYREP 180 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------------~~~--~~--~~~~~~~~~ 180 (485)
+++||+|+++.+++|+++ ...+++++.++|+|||.+++..+...... ... .. .....+.+.
T Consensus 93 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T 2p35_A 93 AQKADLLYANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPP 170 (259)
T ss_dssp SSCEEEEEEESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCH
T ss_pred cCCcCEEEEeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCH
Confidence 789999999999999987 66999999999999999999875432110 000 00 113345578
Q ss_pred hHHHHHhhhccee
Q 043471 181 RFYSKVFKECQIQ 193 (485)
Q Consensus 181 ~~~~~~~~~~~~~ 193 (485)
+.+.+.++++||.
T Consensus 171 ~~~~~~l~~aGf~ 183 (259)
T 2p35_A 171 SDYFNALSPKSSR 183 (259)
T ss_dssp HHHHHHHGGGEEE
T ss_pred HHHHHHHHhcCCc
Confidence 8999999999984
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.6e-19 Score=158.82 Aligned_cols=152 Identities=11% Similarity=0.114 Sum_probs=113.6
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-------CeEEEEeecc
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-------NVKFMCADVT 110 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~ 110 (485)
+.....+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++....+ +++++++|+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT 94 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence 3445566666666778899999999999999999875 599999999999999999865322 7999999987
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCC------CCccccCCCCCCCCChhHHH
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ------SGDSKRKHNPTHYREPRFYS 184 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 184 (485)
. .+.++++||+|+++.+++|++++....+++++.++|||||.+++....... ..............+++.+.
T Consensus 95 ~--~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (217)
T 3jwh_A 95 Y--QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQFQ 172 (217)
T ss_dssp S--CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSCBCHHHHH
T ss_pred c--ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccccCHHHHH
Confidence 6 445668999999999999999876789999999999999987776443110 00001111122223566666
Q ss_pred ----HHhhhccee
Q 043471 185 ----KVFKECQIQ 193 (485)
Q Consensus 185 ----~~~~~~~~~ 193 (485)
.++++.||.
T Consensus 173 ~~~~~~~~~~Gf~ 185 (217)
T 3jwh_A 173 NWANKITERFAYN 185 (217)
T ss_dssp HHHHHHHHHSSEE
T ss_pred HHHHHHHHHcCce
Confidence 788888885
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.7e-19 Score=159.01 Aligned_cols=152 Identities=12% Similarity=0.132 Sum_probs=113.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-------CeEEEEeecc
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-------NVKFMCADVT 110 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~ 110 (485)
+...+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++....+ +++++++|+.
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~ 94 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLV 94 (219)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSS
T ss_pred HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccc
Confidence 3444556666666678899999999999999999986 599999999999999999864322 7999999997
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc------cccCCCCCCCCChhHHH
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD------SKRKHNPTHYREPRFYS 184 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 184 (485)
. .++++++||+|+++.+++|++++...++++++.++|||||.+++.......... ..+........+++.+.
T Consensus 95 ~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (219)
T 3jwg_A 95 Y--RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEWTRKEFQ 172 (219)
T ss_dssp S--CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSBCHHHHH
T ss_pred c--cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeeecHHHHH
Confidence 6 555678999999999999999876789999999999999976665432211000 00111222223556666
Q ss_pred ----HHhhhccee
Q 043471 185 ----KVFKECQIQ 193 (485)
Q Consensus 185 ----~~~~~~~~~ 193 (485)
.++++.||.
T Consensus 173 ~~~~~l~~~~Gf~ 185 (219)
T 3jwg_A 173 TWAVKVAEKYGYS 185 (219)
T ss_dssp HHHHHHHHHHTEE
T ss_pred HHHHHHHHHCCcE
Confidence 777888874
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=166.64 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=122.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC-CCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY-PENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~-~~~~fD~i~~~~ 357 (485)
+.++.+|||||||+|.++..+++....+++|+|+|+.+++.|+++....+ .++++.++|+.+.++ ++++||+|++..
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 56788999999999999999888733499999999999999999986443 468999999999887 578999999999
Q ss_pred cccc----cCCHHHHHHHHHhcCCCCcEEEEEecccCCC-----------------------CCC---hhH----HHHHH
Q 043471 358 TILH----IQDKPALFKSFFKWLKPGGTVLISDYCKSFG-----------------------TPS---VEF----SEYIK 403 (485)
Q Consensus 358 ~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------------~~~---~~~----~~~~~ 403 (485)
+++| ..++..+++++.++|||||++++..+..... .+. ..+ .....
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 221 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 221 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhc
Confidence 9987 3577899999999999999999987543100 000 000 00000
Q ss_pred hcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHH
Q 043471 404 QRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVL 440 (485)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 440 (485)
.....+++.+++.++|+++||+++........|...+
T Consensus 222 ~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~~~~~~ 258 (298)
T 1ri5_A 222 NCIEYFVDFTRMVDGFKRLGLSLVERKGFIDFYEDEG 258 (298)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEecCHHHHHHHHH
Confidence 0012456889999999999999999987766554443
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=159.41 Aligned_cols=147 Identities=18% Similarity=0.146 Sum_probs=116.0
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcc-cccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRD-TILH 361 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~-~~~~ 361 (485)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++++.++|+.+++++ ++||+|++.. +++|
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCccccc
Confidence 6789999999999999999988 78999999999999999998865545799999999998876 8899999998 9999
Q ss_pred c---CCHHHHHHHHHhcCCCCcEEEEEecccCCC---CCC-----------hhHHH-----------------------H
Q 043471 362 I---QDKPALFKSFFKWLKPGGTVLISDYCKSFG---TPS-----------VEFSE-----------------------Y 401 (485)
Q Consensus 362 ~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~~~-----------~~~~~-----------------------~ 401 (485)
+ .+...++++++++|||||++++........ ... ..+.. .
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 9 567889999999999999999865432100 000 00000 0
Q ss_pred HHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 402 IKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
........++.+++.++|+++||+++.+..
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 224 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVD 224 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEc
Confidence 000113567999999999999999988754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=164.38 Aligned_cols=152 Identities=21% Similarity=0.241 Sum_probs=117.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC---CCCeEEEEccCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL---KCSVEFEVADCTKKTYP 346 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~---~~~i~~~~~d~~~~~~~ 346 (485)
....+..+...++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++... ..+++++++|+.+++++
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~ 104 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFL 104 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGG
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcc
Confidence 3444444445678899999999999999999743 679999999999999999987654 56899999999998877
Q ss_pred C------CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCC----CCChhHHHHHHhc--CCCC---CC
Q 043471 347 E------NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG----TPSVEFSEYIKQR--GYDL---HD 411 (485)
Q Consensus 347 ~------~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~--~~~~---~~ 411 (485)
+ ++||+|++..+++|+ ++..+++++.++|||||.+++.++..... .....+..+.... ...+ ..
T Consensus 105 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~ 183 (299)
T 3g5t_A 105 GADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPG 183 (299)
T ss_dssp CTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTH
T ss_pred ccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchh
Confidence 6 899999999999999 99999999999999999999955433211 1112233332210 1112 45
Q ss_pred HHHHHHHHHhCCC
Q 043471 412 VKSYGQMLKDAGF 424 (485)
Q Consensus 412 ~~~~~~~l~~aGf 424 (485)
.+.+.+.++++||
T Consensus 184 ~~~~~~~l~~~gf 196 (299)
T 3g5t_A 184 RSRLRNMLKDSHL 196 (299)
T ss_dssp HHHHHTTTTTCCC
T ss_pred hHHHHHhhhccCC
Confidence 5678999999999
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=165.57 Aligned_cols=146 Identities=21% Similarity=0.299 Sum_probs=115.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCe
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
.+++.+... +.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++.... ++++++++|+.+++ ++++++|
T Consensus 60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~f 137 (285)
T 4htf_A 60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVA-SHLETPV 137 (285)
T ss_dssp HHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTG-GGCSSCE
T ss_pred HHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhh-hhcCCCc
Confidence 455555544 679999999999999999999999999999999999999876432 47999999998832 2567899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCC------------------CCccccCCCCCCCCChhHH
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ------------------SGDSKRKHNPTHYREPRFY 183 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~ 183 (485)
|+|++..+++|+++ ...+++++.++|+|||.+++.+++... .........+..+.+++.+
T Consensus 138 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (285)
T 4htf_A 138 DLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQV 215 (285)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHH
T ss_pred eEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHH
Confidence 99999999999988 569999999999999999998754211 0000111223345588999
Q ss_pred HHHhhhcceec
Q 043471 184 SKVFKECQIQD 194 (485)
Q Consensus 184 ~~~~~~~~~~~ 194 (485)
..+++++||..
T Consensus 216 ~~~l~~aGf~v 226 (285)
T 4htf_A 216 YLWLEEAGWQI 226 (285)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHCCCce
Confidence 99999999964
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=153.85 Aligned_cols=141 Identities=23% Similarity=0.273 Sum_probs=111.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++.. ..++++++++|+.+ +++ +++|
T Consensus 22 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~-~~~~ 98 (199)
T 2xvm_A 22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNN--LTF-DRQY 98 (199)
T ss_dssp HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGG--CCC-CCCE
T ss_pred HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhh--CCC-CCCc
Confidence 356666666678899999999999999999999999999999999999998643 22479999999988 445 7899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
|+|+++.+++|++.+....+++++.++|+|||.+++.+........ .........+++.+.++++.
T Consensus 99 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 164 (199)
T 2xvm_A 99 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP--CTVGFPFAFKEGELRRYYEG 164 (199)
T ss_dssp EEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC--CCSCCSCCBCTTHHHHHTTT
T ss_pred eEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC--CCCCCCCccCHHHHHHHhcC
Confidence 9999999999998666889999999999999998876543322111 11122234477888888876
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-19 Score=163.13 Aligned_cols=181 Identities=13% Similarity=0.178 Sum_probs=127.1
Q ss_pred ChhHHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCC
Q 043471 6 NHGEREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFI 85 (485)
Q Consensus 6 ~~~~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s 85 (485)
|+...+..+.||+.....+... ................+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|
T Consensus 6 m~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s 83 (227)
T 3e8s_A 6 MRNPEDALLDSWHQNAQAWIDA--VRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGD 83 (227)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH--HHHTCCHHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESC
T ss_pred hhcHHHHHHHHHHhhHHHHHHH--hcccccccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC
Confidence 3444566788999765544321 11111111112233456677666777999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 86 DSVIKKNEEVNGHFENVKFMCADVTSPD-LTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+.+++.|+++ .++.+..+|+.+.. .++. .++||+|+++.+++ ..+ ...+++++.++|+|||++++.++...
T Consensus 84 ~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~ 156 (227)
T 3e8s_A 84 RTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQD--IIELLSAMRTLLVPGGALVIQTLHPW 156 (227)
T ss_dssp HHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SSC--CHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHh----cccccchhhHHhhcccccccCCCccEEEECchhh-hhh--HHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 9999999987 57888998887641 1333 44599999999988 555 56899999999999999999877553
Q ss_pred CCCcc--cc--------------CCCCCCCCChhHHHHHhhhcceecC
Q 043471 164 QSGDS--KR--------------KHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 164 ~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
..... .. ......+.+.+.+.+.++++||...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 204 (227)
T 3e8s_A 157 SVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV 204 (227)
T ss_dssp TTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred ccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence 32211 00 0011233478899999999999654
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-20 Score=182.58 Aligned_cols=160 Identities=20% Similarity=0.268 Sum_probs=121.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe-EEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV-EFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i-~~~~~d~~~~~~~~~ 348 (485)
..+..+++.+.+.++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++ +..... .+...+...++++++
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK--GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT--TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc--CCCcceeeechhhHhhcccCCC
Confidence 45667788888888999999999999999999987 77999999999999999876 221111 122334444556678
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|++.++++|++++..++++++++|||||++++..+..........+... ...+..+++.+++.++++++||++++
T Consensus 171 ~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~ll~~aGf~~~~ 249 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQI-FDEHFFLFSATSVQGMAQRCGFELVD 249 (416)
T ss_dssp CEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGC-STTCCEECCHHHHHHHHHHTTEEEEE
T ss_pred CEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhh-hhhhhhcCCHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999986542110000000001 12344578999999999999999998
Q ss_pred Eeecc
Q 043471 429 AEDRT 433 (485)
Q Consensus 429 ~~~~~ 433 (485)
++...
T Consensus 250 ~~~~~ 254 (416)
T 4e2x_A 250 VQRLP 254 (416)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 87643
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=159.67 Aligned_cols=116 Identities=15% Similarity=0.156 Sum_probs=98.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC---CC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL---TF 116 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~ 116 (485)
+...+.+++.+...++.+|||||||+|.++..|++++.+|+|+|+|+.|++.|+++.... ++.+++.+.+. ..
T Consensus 31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~ 106 (261)
T 3iv6_A 31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKE 106 (261)
T ss_dssp CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccc
Confidence 356677888888889999999999999999999999999999999999999999987542 45566655333 12
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+++||+|+++.+++|+..++...+++++.++| |||.++++..
T Consensus 107 ~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 107 LAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 257999999999999998777889999999999 9999999754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=154.14 Aligned_cols=133 Identities=18% Similarity=0.269 Sum_probs=111.3
Q ss_pred CCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccccC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ 363 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~ 363 (485)
+.+|||+|||+|.++..+++. +|+|+|+.+++.++++ ++++..+|+.++++++++||+|++..+++|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGGSS
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc------CCEEEEcccccCCCCCCCeeEEEEcchHhhcc
Confidence 779999999999999988765 9999999999999886 58899999999888888999999999999999
Q ss_pred CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH--------hcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 364 DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK--------QRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 364 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
++..+++++.++|+|||.+++.++.... .+..... .....+++.+++.++|+++||+++.+...
T Consensus 117 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 117 DPERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999999998765421 1111111 01235678999999999999999887653
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-18 Score=154.47 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=108.8
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccC--h-hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCCh
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLD--K-EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFID 86 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~ 86 (485)
..++.||++.+...... ....|. . .....+.+.+ .++.+|||||||+|.++..+++.+. +|+|+|+|+
T Consensus 4 ~~~~~~W~~~y~~~~~~------~~~~~~~~~~~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~ 75 (215)
T 2pxx_A 4 YREVEYWDQRYQGAADS------APYDWFGDFSSFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSS 75 (215)
T ss_dssp GGCHHHHHHHTTTTTTS------CCCCTTCCHHHHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCH
T ss_pred ccchhHHHHHhccCCCC------CCcccccCHHHHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCH
Confidence 45678999866533200 111121 1 2223333333 5678999999999999999999876 899999999
Q ss_pred HHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-------------hHHHHHHHHHHHhhcccCc
Q 043471 87 SVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-------------DKEVEKLAERMVKWLKVGG 153 (485)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG 153 (485)
.+++.|+++....++++++++|+.+ +++++++||+|+++.+++++. ......+++++.++|+|||
T Consensus 76 ~~~~~a~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 153 (215)
T 2pxx_A 76 VVVAAMQACYAHVPQLRWETMDVRK--LDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG 153 (215)
T ss_dssp HHHHHHHHHTTTCTTCEEEECCTTS--CCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEE
T ss_pred HHHHHHHHhcccCCCcEEEEcchhc--CCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCC
Confidence 9999999987655689999999988 456788999999998887765 3346799999999999999
Q ss_pred EEEEEecc
Q 043471 154 YIFFRESC 161 (485)
Q Consensus 154 ~l~~~~~~ 161 (485)
.+++.++.
T Consensus 154 ~li~~~~~ 161 (215)
T 2pxx_A 154 RFISMTSA 161 (215)
T ss_dssp EEEEEESC
T ss_pred EEEEEeCC
Confidence 99998764
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=162.16 Aligned_cols=148 Identities=14% Similarity=0.027 Sum_probs=109.8
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCC----------------------------
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLK---------------------------- 330 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~---------------------------- 330 (485)
...++.+|||||||+|.++..++.. +. +|+|+|+|+.|++.|++++....
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 4567889999999999888776665 44 79999999999999998764321
Q ss_pred --CCeE-EEEccCCCC-CC---CCCCccEEEEccccccc----CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH
Q 043471 331 --CSVE-FEVADCTKK-TY---PENSFDVIYSRDTILHI----QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399 (485)
Q Consensus 331 --~~i~-~~~~d~~~~-~~---~~~~fD~i~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 399 (485)
.++. ++++|+.+. |+ ..++||+|+++.++||+ ++...++++++++|||||+|++++........ ..
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~---~g 207 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM---VG 207 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE---ET
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce---eC
Confidence 1233 888999873 43 25789999999999986 35578999999999999999999754321100 00
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 400 EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
. .......++.+++.++|+++||+++.+....
T Consensus 208 ~--~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 208 K--REFSCVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp T--EEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred C--eEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 0 0011134689999999999999998887643
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=164.60 Aligned_cols=147 Identities=11% Similarity=-0.009 Sum_probs=108.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC------------------------------
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC------------------------------ 331 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~------------------------------ 331 (485)
.++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|++++.....
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 36789999999999966555544467999999999999999886542110
Q ss_pred -CeEEEEccCCC-CCC-----CCCCccEEEEcccccc----cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH
Q 043471 332 -SVEFEVADCTK-KTY-----PENSFDVIYSRDTILH----IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400 (485)
Q Consensus 332 -~i~~~~~d~~~-~~~-----~~~~fD~i~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 400 (485)
.++++.+|+.+ +|+ ++++||+|+++.+++| ++++..+|++++++|||||++++........... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~---~- 225 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA---G- 225 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE---T-
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc---C-
Confidence 14567778887 553 3467999999999999 5578999999999999999999985332110000 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 401 YIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
........++.+++.++|+++||+++.+....
T Consensus 226 -~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 226 -EARLTVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp -TEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 00111346789999999999999999887654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=160.56 Aligned_cols=102 Identities=23% Similarity=0.315 Sum_probs=90.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
.+.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++ .++++.++|++++++++++||+|++..++||+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~~-----~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~ 112 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALRH-----PRVTYAVAPAEDTGLPPASVDVAIAAQAMHWF 112 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCCC-----TTEEEEECCTTCCCCCSSCEEEEEECSCCTTC
T ss_pred CCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhhc-----CCceeehhhhhhhcccCCcccEEEEeeehhHh
Confidence 4569999999999999999987 67999999999999887542 47999999999999999999999999999887
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 363 QDKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 363 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
++++++++++|+|||||+|++..+....
T Consensus 113 -~~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 113 -DLDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp -CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred -hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 6889999999999999999998765443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=161.56 Aligned_cols=162 Identities=16% Similarity=0.209 Sum_probs=128.5
Q ss_pred HHHHHHHHHcCC--CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC
Q 043471 270 ETTKEFVAKLDL--KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~ 344 (485)
.....+++.+.. .++.+|||+|||+|.++..+++.+ +.+++++|+| .+++.|++++. ++..++++..+|+.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 228 (335)
T 2r3s_A 150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD 228 (335)
T ss_dssp HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence 345567777776 788899999999999999999886 6799999999 99999999875 33447999999998877
Q ss_pred CCCCCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH------HhcCCCCCCHHHHH
Q 043471 345 YPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI------KQRGYDLHDVKSYG 416 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 416 (485)
++. .||+|++.++++|+++ ...++++++++|+|||++++.+................ ...+...++.++|.
T Consensus 229 ~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 307 (335)
T 2r3s_A 229 YGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYE 307 (335)
T ss_dssp CCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHH
T ss_pred CCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHH
Confidence 654 4999999999999954 47999999999999999999987765432222211111 11134678999999
Q ss_pred HHHHhCCCeEEEEeecc
Q 043471 417 QMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~~~ 433 (485)
++++++||+++.+....
T Consensus 308 ~ll~~aGf~~~~~~~~~ 324 (335)
T 2r3s_A 308 SMFSNAGFSHSQLHSLP 324 (335)
T ss_dssp HHHHHTTCSEEEEECCT
T ss_pred HHHHHCCCCeeeEEECC
Confidence 99999999999887644
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=161.47 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=123.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+++.+...+..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++++. ++..++++..+|+. .+++. +|
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~ 236 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GA 236 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SC
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CC
Confidence 34455556667899999999999999999876 679999999 999999999876 34468999999997 45555 89
Q ss_pred cEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH-HHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 351 DVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY-IKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 351 D~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
|+|++.+++||+++. .+++++++++|+|||++++.+.......+...+.-. ....+...++.++|.++|+++||+++
T Consensus 237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEE
T ss_pred cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEE
Confidence 999999999999874 889999999999999999998765544221111111 11233457899999999999999999
Q ss_pred EEeecc
Q 043471 428 IAEDRT 433 (485)
Q Consensus 428 ~~~~~~ 433 (485)
++....
T Consensus 317 ~~~~~~ 322 (332)
T 3i53_A 317 AAHPIS 322 (332)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 887543
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-18 Score=160.92 Aligned_cols=147 Identities=11% Similarity=0.095 Sum_probs=116.2
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
...+++.+...++.+|||||||+|.++..+++ .+.+|+|+|+|+++++.|+++... .++++++++|+.+ ++
T Consensus 53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~--- 127 (287)
T 1kpg_A 53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ--FD--- 127 (287)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG--CC---
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh--CC---
Confidence 34667788888899999999999999999995 488999999999999999987543 2479999999976 43
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------------------c-CCCCCCCCC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------------------R-KHNPTHYRE 179 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------------~-~~~~~~~~~ 179 (485)
++||+|++..+++|++++....+++++.++|||||.+++.++......... . ........+
T Consensus 128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 207 (287)
T 1kpg_A 128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPS 207 (287)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCC
Confidence 789999999999999654578999999999999999999877643211100 0 011123347
Q ss_pred hhHHHHHhhhcceec
Q 043471 180 PRFYSKVFKECQIQD 194 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~ 194 (485)
.+.+...++++||..
T Consensus 208 ~~~~~~~l~~aGf~~ 222 (287)
T 1kpg_A 208 IPMVQECASANGFTV 222 (287)
T ss_dssp HHHHHHHHHTTTCEE
T ss_pred HHHHHHHHHhCCcEE
Confidence 888999999999854
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.9e-18 Score=158.39 Aligned_cols=114 Identities=24% Similarity=0.471 Sum_probs=100.6
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+..+.+.++..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++... .+++++++|+.. +++++++|
T Consensus 32 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~--~~~~~~~f 108 (243)
T 3bkw_A 32 WPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDK--LHLPQDSF 108 (243)
T ss_dssp HHHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGG--CCCCTTCE
T ss_pred HHHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhh--ccCCCCCc
Confidence 34567777777889999999999999999999988 999999999999999998654 479999999988 55678899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|++..+++|+++ ...+++++.++|+|||.+++....
T Consensus 109 D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 109 DLAYSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred eEEEEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCC
Confidence 99999999999987 669999999999999999997643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-17 Score=160.13 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=127.6
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++++. ++..++++..+|+. .+++.
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~-~~~p~- 267 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF-ETIPD- 267 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-TCCCS-
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-CCCCC-
Confidence 4567778888888999999999999999999986 679999999 999999999875 34568999999998 56665
Q ss_pred CccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEecccCCCCCCh-hHHHH--HHhcCCCCCCHHHHHHHHHhCC
Q 043471 349 SFDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDYCKSFGTPSV-EFSEY--IKQRGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~~aG 423 (485)
+||+|++.+++|++++.. ++|++++++|||||++++.+.......... .+... ....+...++.++|.++|+++|
T Consensus 268 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aG 347 (369)
T 3gwz_A 268 GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSG 347 (369)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTT
T ss_pred CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCC
Confidence 899999999999998765 799999999999999999987665443221 11111 1122345678999999999999
Q ss_pred CeEEEEee
Q 043471 424 FVDIIAED 431 (485)
Q Consensus 424 f~~~~~~~ 431 (485)
|+++.+..
T Consensus 348 f~~~~~~~ 355 (369)
T 3gwz_A 348 LRVERSLP 355 (369)
T ss_dssp EEEEEEEE
T ss_pred CeEEEEEE
Confidence 99998866
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-19 Score=159.72 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=117.1
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~ 115 (485)
......+++.+...++ +|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++++++++|+.+ ++
T Consensus 30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~ 106 (219)
T 3dlc_A 30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN--IP 106 (219)
T ss_dssp HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB--CS
T ss_pred HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH--CC
Confidence 3455667777776666 9999999999999999998 77999999999999999987432 2479999999988 56
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-----cCC---------CCCCCCChh
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-----RKH---------NPTHYREPR 181 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----~~~---------~~~~~~~~~ 181 (485)
+++++||+|+++.+++|+++ ...+++++.++|+|||.+++.+.......... ... ......+.+
T Consensus 107 ~~~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (219)
T 3dlc_A 107 IEDNYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVE 184 (219)
T ss_dssp SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHH
T ss_pred CCcccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHH
Confidence 77899999999999999977 66999999999999999999864432110000 000 112223567
Q ss_pred HHHHHhhhcceecC
Q 043471 182 FYSKVFKECQIQDA 195 (485)
Q Consensus 182 ~~~~~~~~~~~~~~ 195 (485)
.+...++++||...
T Consensus 185 ~~~~~l~~aGf~~v 198 (219)
T 3dlc_A 185 RFQNVLDEIGISSY 198 (219)
T ss_dssp HHHHHHHHHTCSSE
T ss_pred HHHHHHHHcCCCeE
Confidence 89999999999553
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=150.42 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=111.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++ .++++++.+| +++++++||+
T Consensus 7 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~v~~~~~d-----~~~~~~~~D~ 78 (170)
T 3i9f_A 7 EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---FDSVITLSDP-----KEIPDNSVDF 78 (170)
T ss_dssp TTTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---CTTSEEESSG-----GGSCTTCEEE
T ss_pred HHHHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---CCCcEEEeCC-----CCCCCCceEE
Confidence 3455556667788999999999999999999977999999999999999998 3689999998 3456789999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
|+++.+++|+++ ...+++++.++|+|||.+++.++....... ........+.+.+.++++ ||...
T Consensus 79 v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~--Gf~~~ 143 (170)
T 3i9f_A 79 ILFANSFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGI---GPPLSIRMDEKDYMGWFS--NFVVE 143 (170)
T ss_dssp EEEESCSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSS---SSCGGGCCCHHHHHHHTT--TEEEE
T ss_pred EEEccchhcccC--HHHHHHHHHHhcCCCCEEEEEEcCcccccc---CchHhhhcCHHHHHHHHh--CcEEE
Confidence 999999999987 669999999999999999998776443211 111223347888999998 88543
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=163.33 Aligned_cols=145 Identities=15% Similarity=0.227 Sum_probs=116.7
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 119 (485)
.+++.+. ..++.+|||||||+|.++..++++ +.+|+|+|+|+.+++.|+++... .++++++++|+.+ ++++++
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 184 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD--TPFDKG 184 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS--CCCCTT
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhc--CCCCCC
Confidence 4667777 677899999999999999999998 89999999999999999987532 2479999999988 567789
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-------CCCCCCCCChhHHHHHhhhcce
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-------KHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+||+|+++.+++|++ ...+++++.++|||||++++.++.......... ........+.+.+.+.++++||
T Consensus 185 ~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf 261 (312)
T 3vc1_A 185 AVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRL 261 (312)
T ss_dssp CEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTE
T ss_pred CEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCC
Confidence 999999999999994 678999999999999999998765443221100 0111234477889999999998
Q ss_pred ec
Q 043471 193 QD 194 (485)
Q Consensus 193 ~~ 194 (485)
..
T Consensus 262 ~~ 263 (312)
T 3vc1_A 262 VP 263 (312)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=157.85 Aligned_cols=172 Identities=13% Similarity=0.091 Sum_probs=122.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc----CC-CCCeEEEEccCCCCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI----GL-KCSVEFEVADCTKKTYP 346 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~-~~~i~~~~~d~~~~~~~ 346 (485)
...++.+...++.+|||+|||+|.++..+++.. +.+|+|+|+|+.|++.+.++.. .. ..++++.++|+.+++++
T Consensus 17 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~ 96 (218)
T 3mq2_A 17 DAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL 96 (218)
T ss_dssp HHHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred HHHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence 344555567788999999999999999999986 6799999999998886433221 11 23799999999999887
Q ss_pred CCCccEEEEc---ccc--cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCC----HHHHHH
Q 043471 347 ENSFDVIYSR---DTI--LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHD----VKSYGQ 417 (485)
Q Consensus 347 ~~~fD~i~~~---~~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 417 (485)
+++ |.|+.. ... +|++++..++++++++|||||++++............... ..+..+ .+.+..
T Consensus 97 ~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~ 169 (218)
T 3mq2_A 97 SGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVG------EHPEPTPDSADEWLAP 169 (218)
T ss_dssp CCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGT------TCCCCCHHHHHHHHHH
T ss_pred CCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccc------cCCccchHHHHHHHHH
Confidence 666 766633 233 3778889999999999999999999643221111111110 111222 345778
Q ss_pred HHHhCCCeEEEEeecchHHHHHH-HHHHHHHHhcH
Q 043471 418 MLKDAGFVDIIAEDRTEQFVQVL-QRELDAIEKDK 451 (485)
Q Consensus 418 ~l~~aGf~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 451 (485)
+++++||++.+++....++...+ ..|..++...+
T Consensus 170 ~l~~aGf~i~~~~~~~~~~~~~~~~~w~~~~~~~r 204 (218)
T 3mq2_A 170 RYAEAGWKLADCRYLEPEEVAGLETSWTRRLHSSR 204 (218)
T ss_dssp HHHHTTEEEEEEEEECHHHHHHTCCTHHHHHTTCC
T ss_pred HHHHcCCCceeeeccchhhhhhhHHHHHHHHcccc
Confidence 99999999999998887776554 56777765443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.9e-19 Score=163.81 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=111.1
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCC----------------------
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFEN---------------------- 101 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~---------------------- 101 (485)
.++.. +..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+.
T Consensus 48 ~~~~~-~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (265)
T 2i62_A 48 KIFCL-GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGP 126 (265)
T ss_dssp HHHHS-SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHH
T ss_pred HHhcc-cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchH
Confidence 34443 556778999999999999999999887 999999999999999988754332
Q ss_pred ---------e-EEEEeeccCCCCCCCC---CCeeEEEhhhhhhccCh--HHHHHHHHHHHhhcccCcEEEEEeccCCCCC
Q 043471 102 ---------V-KFMCADVTSPDLTFSE---DSVDMMFSNWLLMYLSD--KEVEKLAERMVKWLKVGGYIFFRESCFHQSG 166 (485)
Q Consensus 102 ---------~-~~~~~d~~~~~~~~~~---~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 166 (485)
+ +++++|+.+.. ++++ ++||+|+++.+++|+.. +....+++++.++|+|||++++.+.......
T Consensus 127 ~~~~~l~~~v~~~~~~d~~~~~-~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 127 EKEEKLRRAIKQVLKCDVTQSQ-PLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp HHHHHHHHHEEEEEECCTTSSS-TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred HHHHHhhhhheeEEEeeeccCC-CCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 7 99999998743 2244 89999999999995532 2478999999999999999999875322100
Q ss_pred ccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 167 DSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
............+.+.+...++++||...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 206 MIGEQKFSSLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTCEEE
T ss_pred EcCCccccccccCHHHHHHHHHHCCCEEE
Confidence 00001112233467899999999999543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-19 Score=166.68 Aligned_cols=146 Identities=19% Similarity=0.310 Sum_probs=110.9
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-------------------------------
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK------------------------------- 330 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~------------------------------- 330 (485)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++....
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 57899999999999999999987 5799999999999999998764321
Q ss_pred ----------------------------CCeEEEEccCCCCC-----CCCCCccEEEEcccccccC------CHHHHHHH
Q 043471 331 ----------------------------CSVEFEVADCTKKT-----YPENSFDVIYSRDTILHIQ------DKPALFKS 371 (485)
Q Consensus 331 ----------------------------~~i~~~~~d~~~~~-----~~~~~fD~i~~~~~~~~~~------~~~~~l~~ 371 (485)
.++++.++|+...+ +.+++||+|+|..+++|+. +...+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 47999999998654 5678999999999998875 78899999
Q ss_pred HHhcCCCCcEEEEEecccCC----CCCChhHHHHHHhcCCCCCCHHHHHHHHHh--CCCeEEEEee
Q 043471 372 FFKWLKPGGTVLISDYCKSF----GTPSVEFSEYIKQRGYDLHDVKSYGQMLKD--AGFVDIIAED 431 (485)
Q Consensus 372 ~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--aGf~~~~~~~ 431 (485)
++++|||||+|++....... ............. ....++++.++|.+ +||+.+++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~---~~~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYR---IQLKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHH---CCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhc---EEEcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999999997432210 1111111111111 12347889999999 9998877654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=154.69 Aligned_cols=151 Identities=28% Similarity=0.379 Sum_probs=114.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccc--
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT-- 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~-- 358 (485)
++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++++..+|+.++++++++||+|++..+
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred cCCCCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 345789999999999999999987 55999999999999999998765556899999999998887889999999999
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCC---Ch--hHHHHHH----hc---------------C----CCCC
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP---SV--EFSEYIK----QR---------------G----YDLH 410 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~--~~~~~~~----~~---------------~----~~~~ 410 (485)
+++.++...++++++++|||||++++.++....... .. ....+.. +. + ...+
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 194 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVW 194 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----CCEEEEECC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchhhheeehhhh
Confidence 555567889999999999999999998764211000 00 0000000 00 0 0112
Q ss_pred CHHHHHHHHHhCCCeEEEEeecc
Q 043471 411 DVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
. .++.++|+++||+.+.+....
T Consensus 195 ~-~~~~~~l~~~GF~~v~~~~~~ 216 (227)
T 1ve3_A 195 G-KTGVELLAKLYFTKEAEEKVG 216 (227)
T ss_dssp C-HHHHHHHHTTTEEEEEEEEET
T ss_pred c-hHHHHHHHHHhhhHHHHHHhC
Confidence 2 378999999999999987754
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=148.26 Aligned_cols=135 Identities=20% Similarity=0.298 Sum_probs=115.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..+++.+ ++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++.. ++.+..+|+.+.++++++||+
T Consensus 37 ~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~~D~ 110 (195)
T 3cgg_A 37 ARLIDAM-APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP----EARWVVGDLSVDQISETDFDL 110 (195)
T ss_dssp HHHHHHH-SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT----TSEEEECCTTTSCCCCCCEEE
T ss_pred HHHHHHh-ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC----CCcEEEcccccCCCCCCceeE
Confidence 3455555 567889999999999999999988 7899999999999999999864 589999999998888889999
Q ss_pred EEEc-ccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 353 IYSR-DTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 353 i~~~-~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
|++. .+++|++ +...+++++.++|+|||.+++..... ..++..++.++++++||+++..
T Consensus 111 i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG------------------RGWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT------------------SSCCHHHHHHHHHHHTEEEEEE
T ss_pred EEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC------------------CCcCHHHHHHHHHHcCCEEeee
Confidence 9998 7888884 56889999999999999999985432 1257889999999999999877
Q ss_pred ee
Q 043471 430 ED 431 (485)
Q Consensus 430 ~~ 431 (485)
..
T Consensus 173 ~~ 174 (195)
T 3cgg_A 173 FE 174 (195)
T ss_dssp ES
T ss_pred ec
Confidence 54
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=156.70 Aligned_cols=149 Identities=18% Similarity=0.171 Sum_probs=115.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
..++.+|||+|||+|..+..++...+.+++|+|+|+.+++.|+++....+.++++.++|+.++++++++||+|++..+++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 45678999999999998544444447899999999999999999875444578999999999988889999999999999
Q ss_pred cc--CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCC--hhHHH--H-----HHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 361 HI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPS--VEFSE--Y-----IKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 361 ~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--~~~~~--~-----~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
|+ .++..++++++++|||||++++.++........ ..+.. + ..+....+++.+++.++++++||...+.
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~ 180 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKED 180 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeee
Confidence 99 578899999999999999999998765432210 00000 0 0001114668899999999999977654
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=157.05 Aligned_cols=151 Identities=19% Similarity=0.245 Sum_probs=114.5
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
.++.... .++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++.. ++++..+|+.++++ +++||+|
T Consensus 32 ~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~----~~~~~~~d~~~~~~-~~~~D~v 104 (239)
T 3bxo_A 32 DLVRSRT-PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRLP----DATLHQGDMRDFRL-GRKFSAV 104 (239)
T ss_dssp HHHHHHC-TTCCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCCC-SSCEEEE
T ss_pred HHHHHhc-CCCCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhCC----CCEEEECCHHHccc-CCCCcEE
Confidence 3344332 66789999999999999999988 4599999999999999998863 68999999998876 6789999
Q ss_pred EE-cccccccC---CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhH----------------------------HHH
Q 043471 354 YS-RDTILHIQ---DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF----------------------------SEY 401 (485)
Q Consensus 354 ~~-~~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~----------------------------~~~ 401 (485)
+| ..+++|++ +...++++++++|||||++++.++........... ..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (239)
T 3bxo_A 105 VSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHF 184 (239)
T ss_dssp EECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEE
T ss_pred EEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEE
Confidence 96 45999995 45789999999999999999987554332110000 000
Q ss_pred H-H-----------hcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 402 I-K-----------QRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 402 ~-~-----------~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
. . .....+++.+++.++|+++||+++.+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~ 226 (239)
T 3bxo_A 185 TVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEG 226 (239)
T ss_dssp EEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESS
T ss_pred EEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEc
Confidence 0 0 0012467899999999999998776643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-18 Score=161.93 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=101.1
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-----CCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-----ENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~ 113 (485)
.......+++.+....+ +|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++.... .+++++++|+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~-- 144 (299)
T 3g2m_A 68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA-- 144 (299)
T ss_dssp CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB--
T ss_pred ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc--
Confidence 34556677777765444 9999999999999999999999999999999999999986543 479999999998
Q ss_pred CCCCCCCeeEEEh-hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 114 LTFSEDSVDMMFS-NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 114 ~~~~~~~~D~v~~-~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++ +++||+|++ ..+++|++++....+++++.++|+|||.+++..+..
T Consensus 145 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 145 FAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp CCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 444 689998885 567888887668899999999999999999987654
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=152.54 Aligned_cols=151 Identities=16% Similarity=0.176 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+..++..+ +++ +|||+|||+|.++..+++. +.+++|+|+|+.+++.|+++....+.++.+..+|+.+.++++++|
T Consensus 20 ~l~~~~~~~--~~~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~f 95 (202)
T 2kw5_A 20 FLVSVANQI--PQG-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAW 95 (202)
T ss_dssp SHHHHHHHS--CSS-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTC
T ss_pred HHHHHHHhC--CCC-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCc
Confidence 344555554 456 9999999999999999987 789999999999999999987644447999999999988888899
Q ss_pred cEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 351 DVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 351 D~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
|+|++.. .|+ .+...+++++.++|||||.+++.++...... ............++.+++.++|+ ||+++.
T Consensus 96 D~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~ 167 (202)
T 2kw5_A 96 EGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----YNTGGPKDLDLLPKLETLQSELP--SLNWLI 167 (202)
T ss_dssp SEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----GTSCCSSSGGGCCCHHHHHHHCS--SSCEEE
T ss_pred cEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----CCCCCCCcceeecCHHHHHHHhc--CceEEE
Confidence 9999954 344 4688999999999999999999976543211 00000011124689999999999 999998
Q ss_pred Eeecc
Q 043471 429 AEDRT 433 (485)
Q Consensus 429 ~~~~~ 433 (485)
++...
T Consensus 168 ~~~~~ 172 (202)
T 2kw5_A 168 ANNLE 172 (202)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76644
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-18 Score=162.31 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=102.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC-------------------------------
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE------------------------------- 100 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~------------------------------- 100 (485)
.++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++....+
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 36789999999999966555553 6799999999999999988653211
Q ss_pred -CeEEEEeeccC-CCC---CCCCCCeeEEEhhhhhhccCh--HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCC
Q 043471 101 -NVKFMCADVTS-PDL---TFSEDSVDMMFSNWLLMYLSD--KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHN 173 (485)
Q Consensus 101 -~~~~~~~d~~~-~~~---~~~~~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~ 173 (485)
.++++++|+.. .++ .+++++||+|+++.+++|+.. ++...+++++.++|||||++++................
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 14677778876 322 245677999999999999542 24789999999999999999997532211000001111
Q ss_pred CCCCCChhHHHHHhhhcceecC
Q 043471 174 PTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+....+.+.+.+.++++||...
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEE
T ss_pred eeccCCHHHHHHHHHHcCCeEE
Confidence 2334578899999999999653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=160.87 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=119.8
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~ 118 (485)
...+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+++++.|+++.... ++++++++|+.+ ++
T Consensus 79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~--- 153 (318)
T 2fk8_A 79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED--FA--- 153 (318)
T ss_dssp HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG--CC---
T ss_pred HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH--CC---
Confidence 356778888888999999999999999999988 899999999999999999876432 469999999977 32
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-------------------cCCCCCCCCC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-------------------RKHNPTHYRE 179 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 179 (485)
++||+|++..+++|++++....+++++.++|+|||.+++.++......... .........+
T Consensus 154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 233 (318)
T 2fk8_A 154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPS 233 (318)
T ss_dssp CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCC
T ss_pred CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCC
Confidence 789999999999999765588999999999999999999887654321100 0011133447
Q ss_pred hhHHHHHhhhcceecCC
Q 043471 180 PRFYSKVFKECQIQDAS 196 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (485)
.+.+.+.++++||....
T Consensus 234 ~~~~~~~l~~aGf~~~~ 250 (318)
T 2fk8_A 234 TEMMVEHGEKAGFTVPE 250 (318)
T ss_dssp HHHHHHHHHHTTCBCCC
T ss_pred HHHHHHHHHhCCCEEEE
Confidence 88999999999996644
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=150.41 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=111.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
..++..+.. ++.+|||+|||+|.++..+ +. +++|+|+|+.+++.++++. .++++..+|+.++++++++||
T Consensus 27 ~~~l~~~~~-~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~~fD 97 (211)
T 2gs9_A 27 ERALKGLLP-PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALPFPGESFD 97 (211)
T ss_dssp HHHHHTTCC-CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCCSCSSCEE
T ss_pred HHHHHHhcC-CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC----CCcEEEEcccccCCCCCCcEE
Confidence 345555543 7889999999999998877 55 9999999999999999986 378999999999998889999
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH-----hcCCCCCCHHHHHHHHHhCC
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK-----QRGYDLHDVKSYGQMLKDAG 423 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~aG 423 (485)
+|++..+++|++++..+++++.++|||||.+++.++...... ......... ..+..+++.+++.++|+ |
T Consensus 98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPW-AALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHH-HHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcH-HHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 999999999999999999999999999999999976543210 000111101 11245689999999999 7
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8.1e-18 Score=150.83 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~ 119 (485)
+....++..++ ++ +|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++.... .+++++++|+.+ ++++++
T Consensus 19 ~~l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~ 93 (202)
T 2kw5_A 19 DFLVSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLAD--FDIVAD 93 (202)
T ss_dssp SSHHHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTT--BSCCTT
T ss_pred HHHHHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhh--cCCCcC
Confidence 34455555543 35 9999999999999999999999999999999999999875321 279999999988 556778
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc-cccCCCCCCCCChhHHHHHhhhcceec
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD-SKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+||+|+++ +.|++......+++++.++|+|||.+++.+........ .........+.+++.+..+++ ||..
T Consensus 94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~v 165 (202)
T 2kw5_A 94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLNW 165 (202)
T ss_dssp TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSCE
T ss_pred CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--CceE
Confidence 99999985 45666556889999999999999999998776433211 111122345568889999998 7743
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=153.55 Aligned_cols=147 Identities=15% Similarity=0.217 Sum_probs=113.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC-----CCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE-----NSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~-----~~fD~i~~ 355 (485)
+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..+++++++|+.+.+... .+||+|++
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT--AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC--CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc--ccCceEEECcccccccccccccccCccEEEE
Confidence 567889999999999999999988 4599999999999999999873 237999999998865321 24999999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCC-----------CCChhHHHHHHhc-CCCCCCHHHHHHHHHh
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFG-----------TPSVEFSEYIKQR-GYDLHDVKSYGQMLKD 421 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ 421 (485)
..+++|++ +...++++++++|||||++++.++..... .+........... .....+.+++.+++
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--
Confidence 99999998 88999999999999999999988754321 1111111111111 11235889999999
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
+||+++.....
T Consensus 209 aGf~~~~~~~~ 219 (245)
T 3ggd_A 209 PDFEILSQGEG 219 (245)
T ss_dssp TTEEEEEEECC
T ss_pred CCCEEEecccc
Confidence 99999876543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=160.79 Aligned_cols=146 Identities=11% Similarity=0.097 Sum_probs=116.7
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ..+++++++|+.++ ++
T Consensus 62 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~ 136 (302)
T 3hem_A 62 KLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----DE 136 (302)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----CC
T ss_pred HHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----CC
Confidence 45778888888999999999999999999998 89999999999999999987543 23799999999873 58
Q ss_pred CeeEEEhhhhhhccCh-------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-------------------CCC
Q 043471 120 SVDMMFSNWLLMYLSD-------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-------------------KHN 173 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-------------------~~~ 173 (485)
+||+|+++.+++|+++ .....+++++.++|||||.+++.++.......... ...
T Consensus 137 ~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 216 (302)
T 3hem_A 137 PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216 (302)
T ss_dssp CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT
T ss_pred CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC
Confidence 9999999999999943 45789999999999999999998776542211000 011
Q ss_pred CCCCCChhHHHHHhhhcceec
Q 043471 174 PTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.....+.+.+...++++||..
T Consensus 217 ~~~~~s~~~~~~~l~~aGf~~ 237 (302)
T 3hem_A 217 GGRLPRISQVDYYSSNAGWKV 237 (302)
T ss_dssp TCCCCCHHHHHHHHHHHTCEE
T ss_pred CCCCCCHHHHHHHHHhCCcEE
Confidence 124456788889999999843
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-18 Score=151.59 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=105.4
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.++..+.. ++.+|||||||+|.++..+ +. +|+|+|+|+.+++.++++. ++++++++|+.+ +++++++||+
T Consensus 28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~--~~~~~~~fD~ 98 (211)
T 2gs9_A 28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEA--LPFPGESFDV 98 (211)
T ss_dssp HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTS--CCSCSSCEEE
T ss_pred HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEccccc--CCCCCCcEEE
Confidence 44555444 7889999999999999888 66 9999999999999999986 589999999988 5677889999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc--------c-ccCCCCCCCCChhHHHHHhh
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD--------S-KRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~ 188 (485)
|++..+++|+++ ..++++++.++|+|||.+++.++....... . .......++.+++.+.++++
T Consensus 99 v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 99 VLLFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp EEEESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred EEEcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHHHhhccCccccccccCCHHHHHHHhc
Confidence 999999999987 669999999999999999998775432100 0 00011233347888888887
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=151.06 Aligned_cols=146 Identities=15% Similarity=0.196 Sum_probs=116.2
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
.....+++.+. .++.+|||||||+|..+..+++.+.+|+|+|+|+.+++.++++. .+++++|+.+...++++++
T Consensus 20 ~~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~ 93 (230)
T 3cc8_A 20 AVNPNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPYEEEQ 93 (230)
T ss_dssp CCCHHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCSCTTC
T ss_pred HHHHHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCCCCCc
Confidence 34456777776 67889999999999999999988889999999999999998864 3789999987556677889
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC---------Cccc-----cCCCCCCCCChhHHHHH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS---------GDSK-----RKHNPTHYREPRFYSKV 186 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~ 186 (485)
||+|+++.+++|+++ ...+++++.++|+|||.+++..+..... .... .........+.+.+.++
T Consensus 94 fD~v~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp EEEEEEESCGGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred cCEEEECChhhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999999987 4699999999999999999987653211 0000 01112234578899999
Q ss_pred hhhcceec
Q 043471 187 FKECQIQD 194 (485)
Q Consensus 187 ~~~~~~~~ 194 (485)
++++||..
T Consensus 172 l~~~Gf~~ 179 (230)
T 3cc8_A 172 FLKAGYSI 179 (230)
T ss_dssp HHHTTEEE
T ss_pred HHHcCCeE
Confidence 99999954
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-17 Score=158.22 Aligned_cols=158 Identities=22% Similarity=0.325 Sum_probs=126.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~ 347 (485)
....+++.+.+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++++.. ...+++++.+|+.+.++++
T Consensus 178 ~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 178 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE 256 (359)
T ss_dssp HHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC
T ss_pred hHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC
Confidence 45677888888888999999999999999999987 679999999 9999999998763 4456999999999877654
Q ss_pred CCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH---HHH-hcCC----CCCCHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE---YIK-QRGY----DLHDVKSYGQ 417 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---~~~-~~~~----~~~~~~~~~~ 417 (485)
+|+|++..+++|+++ ...++++++++|||||++++.+...... ....+.. ... ..+. .+++.++|.+
T Consensus 257 --~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ 333 (359)
T 1x19_A 257 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENPNFDYLSHYILGAGMPFSVLGFKEQARYKE 333 (359)
T ss_dssp --CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHH
T ss_pred --CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCchHHHHHHHHHhcCCCCcccCCCCHHHHHH
Confidence 499999999999987 7889999999999999999988765443 1111111 111 1111 2378999999
Q ss_pred HHHhCCCeEEEEeec
Q 043471 418 MLKDAGFVDIIAEDR 432 (485)
Q Consensus 418 ~l~~aGf~~~~~~~~ 432 (485)
+|+++||+++.+...
T Consensus 334 ll~~aGf~~v~~~~~ 348 (359)
T 1x19_A 334 ILESLGYKDVTMVRK 348 (359)
T ss_dssp HHHHHTCEEEEEEEE
T ss_pred HHHHCCCceEEEEec
Confidence 999999999887654
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-18 Score=158.11 Aligned_cols=148 Identities=14% Similarity=0.078 Sum_probs=114.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCC---------------------------
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKC--------------------------- 331 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~--------------------------- 331 (485)
...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|++++...+.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK 131 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence 4456789999999999999988877 55 999999999999999998764321
Q ss_pred ---Ce-EEEEccCCCCC-CCC---CCccEEEEccccc----ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH
Q 043471 332 ---SV-EFEVADCTKKT-YPE---NSFDVIYSRDTIL----HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399 (485)
Q Consensus 332 ---~i-~~~~~d~~~~~-~~~---~~fD~i~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 399 (485)
++ .+..+|+.+.+ +++ ++||+|++..+++ +++++..+++++.++|||||++++.+......... .
T Consensus 132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~---~ 208 (265)
T 2i62_A 132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI---G 208 (265)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE---T
T ss_pred hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc---C
Confidence 17 89999998864 355 7899999999999 55578899999999999999999987543210000 0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecc
Q 043471 400 EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.........+.+++.++|+++||+++.+....
T Consensus 209 --~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 209 --EQKFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp --TEEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred --CccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 00011235678899999999999999887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-18 Score=158.14 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=93.7
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC-CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG-HFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.. ..++++++++|+.+ +++++++||+|+++.+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARA--IPLPDESVHGVIVVHL 113 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTS--CCSCTTCEEEEEEESC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEccccc--CCCCCCCeeEEEECCc
Confidence 45678899999999999999999999999999999999999999862 23589999999987 5677889999999999
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++|+++ ...+++++.++|+|||.+++.
T Consensus 114 l~~~~~--~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLVPD--WPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGCTT--HHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhcCC--HHHHHHHHHHHCCCCcEEEEE
Confidence 999987 669999999999999999987
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=160.24 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=118.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCC--CCCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKK--TYPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~--~~~~~~fD~i~~~ 356 (485)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.|++++...+ .+++++.+|+.+. |++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 456799999999999999999976 679999999 999999999986443 5799999999886 465 789999999
Q ss_pred ccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhH------HHHH---HhcCCCCCCHHHHHHHHHhCCCe
Q 043471 357 DTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEF------SEYI---KQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 357 ~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
.++|++++. ..+|++++++|||||++++.+............ ...+ ...+...++.++|.++|+++||+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 999999764 578999999999999999998766554332210 1111 11223467999999999999999
Q ss_pred EEEEee
Q 043471 426 DIIAED 431 (485)
Q Consensus 426 ~~~~~~ 431 (485)
++.+..
T Consensus 336 ~v~~~~ 341 (363)
T 3dp7_A 336 VEEIQD 341 (363)
T ss_dssp ESCCCC
T ss_pred EEEEEe
Confidence 887654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-18 Score=160.91 Aligned_cols=119 Identities=16% Similarity=0.295 Sum_probs=101.4
Q ss_pred cChhhhHHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~ 112 (485)
+.+.....+++.+ ...++.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|+++....+ +++++++|+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~- 83 (284)
T 3gu3_A 5 YNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE- 83 (284)
T ss_dssp CCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTT-
T ss_pred cchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhh-
Confidence 3445556666665 4567889999999999999999987 5799999999999999999865433 89999999998
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++ +++||+|++..+++|+++ ...++++++++|+|||++++.++.
T Consensus 84 -~~~-~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 84 -IEL-NDKYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -CCC-SSCEEEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -cCc-CCCeeEEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecc
Confidence 554 469999999999999988 569999999999999999998876
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-19 Score=162.68 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=91.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEE---
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYS--- 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~--- 355 (485)
..+|.+|||||||+|..+..+++..+.+++|||+|+.+++.|+++....+.++.++.+|.... ++++++||.|+.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 467889999999999999999987667999999999999999999887777888888887653 467889999974
Q ss_pred --cccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 356 --RDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 356 --~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...++|..++..++++++|+|||||+|++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5667788899999999999999999998864
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=155.53 Aligned_cols=114 Identities=22% Similarity=0.361 Sum_probs=97.0
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCCC---
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKKT--- 344 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~~--- 344 (485)
..+.+.+...++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.... ..++.+..+|+..++
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 34444444557789999999999999999988 779999999999999998875211 136788899988877
Q ss_pred CCCCCccEEEEc-ccccccCC-------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 345 YPENSFDVIYSR-DTILHIQD-------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ~~~~~fD~i~~~-~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+++++||+|+|. .+++|+++ +..++++++++|||||++++..+
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 778999999998 89999999 99999999999999999999864
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=159.63 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=124.6
Q ss_pred HHHHHHHcCCCC-CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC-CC
Q 043471 272 TKEFVAKLDLKP-GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT-YP 346 (485)
Q Consensus 272 ~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~-~~ 346 (485)
+..+++.+.+.+ +.+|||||||+|.++..+++++ +.+++++|+ +.+++.|+++... ...++++..+|+.+.+ +.
T Consensus 167 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 167 MVDVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC
Confidence 346777777777 8899999999999999999886 679999999 8899999988753 3457999999998875 13
Q ss_pred CCCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHH---HH---HhcCCCCCCHHHHHHH
Q 043471 347 ENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE---YI---KQRGYDLHDVKSYGQM 418 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~ 418 (485)
.++||+|++..++||+++. ..++++++++|||||++++.+.............. .. ...+...++.++|.++
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 4679999999999999765 88999999999999999999876655432221111 11 1123456789999999
Q ss_pred HHhCCCeEEEE
Q 043471 419 LKDAGFVDIIA 429 (485)
Q Consensus 419 l~~aGf~~~~~ 429 (485)
|+++||++++.
T Consensus 326 l~~aGf~~~~~ 336 (352)
T 3mcz_A 326 VRDAGLAVGER 336 (352)
T ss_dssp HHHTTCEEEEE
T ss_pred HHHCCCceeee
Confidence 99999999874
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.8e-17 Score=158.78 Aligned_cols=158 Identities=22% Similarity=0.227 Sum_probs=122.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.+.++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++.. +..++++..+|+.+ +++.
T Consensus 171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~- 247 (374)
T 1qzz_A 171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPV- 247 (374)
T ss_dssp THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSC-
T ss_pred HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCC-
Confidence 4567777778888999999999999999999887 679999999 9999999998753 44579999999976 4443
Q ss_pred CccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEec--ccCCCCCChhHHHHH-----HhcCCCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDY--CKSFGTPSVEFSEYI-----KQRGYDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l 419 (485)
.||+|++..++||+++.. .++++++++|||||++++.+. ..+... ...+.... ...+...++.++|.++|
T Consensus 248 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 326 (374)
T 1qzz_A 248 TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA-DRFFSTLLDLRMLTFMGGRVRTRDEVVDLA 326 (374)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC-CcchhhhcchHHHHhCCCcCCCHHHHHHHH
Confidence 499999999999998764 899999999999999999987 432221 11111111 11234567999999999
Q ss_pred HhCCCeEEEEeecc
Q 043471 420 KDAGFVDIIAEDRT 433 (485)
Q Consensus 420 ~~aGf~~~~~~~~~ 433 (485)
+++||+++.+....
T Consensus 327 ~~aGf~~~~~~~~~ 340 (374)
T 1qzz_A 327 GSAGLALASERTSG 340 (374)
T ss_dssp HTTTEEEEEEEEEC
T ss_pred HHCCCceEEEEECC
Confidence 99999998876543
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.2e-18 Score=161.22 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=92.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCC-CCCCeeEEEh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTF-SEDSVDMMFS 126 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~-~~~~~D~v~~ 126 (485)
..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++.... .+++++++|+.+ +++ ++++||+|++
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG--RHMDLGKEFDVISS 139 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT--SCCCCSSCEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccc--cccCCCCCcCEEEE
Confidence 35678999999999999999988876 9999999999999999886533 368999999988 445 5789999999
Q ss_pred hhhhhc--cChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 NWLLMY--LSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~~~~~~--~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
..+++| ........+++++.++|+|||.+++..+.
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 999988 44555789999999999999999998765
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.9e-18 Score=161.38 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=110.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-------CeEEEEccCCC------C--CCC
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-------SVEFEVADCTK------K--TYP 346 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-------~i~~~~~d~~~------~--~~~ 346 (485)
+++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+. ++++.+.|+.. + +++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999999877666655457999999999999999998754322 25677887722 2 356
Q ss_pred CCCccEEEEccccccc---CCHHHHHHHHHhcCCCCcEEEEEecccCCCC--------------C-ChhHH-------HH
Q 043471 347 ENSFDVIYSRDTILHI---QDKPALFKSFFKWLKPGGTVLISDYCKSFGT--------------P-SVEFS-------EY 401 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--------------~-~~~~~-------~~ 401 (485)
+++||+|+|..++||+ .+...++++++++|||||+++++++....-. . ...+. +.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 7899999999999876 4678999999999999999999876421100 0 00000 00
Q ss_pred ---HHhcC------CCCCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 402 ---IKQRG------YDLHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 402 ---~~~~~------~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
..+.+ ..+.+.+++.++++++||+++.......
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT 248 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence 00111 1256778999999999999998876554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=150.82 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=108.9
Q ss_pred CCCCcEEEEcCCCCcch-HHHHhhcCcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFT-GELAKKAGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~-~~l~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.++.+|||+|||+|..+ ..+++.+.+|+|+|+|+.+++.|+++... ..+++++++|+.+ +++++++||+|++..++
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRK--LPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTS--CCSCTTCEEEEEECSCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhh--CCCCCCceeEEEEcChH
Confidence 45789999999999985 45556688999999999999999987432 2479999999988 55678899999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------------cCCCC--CCCCChhHHHHHhhhcceecC
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------------RKHNP--THYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+|++.+....+++++.++|+|||.+++.+.......... ....+ ..+.+.+.+..+|...|+...
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~ 178 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFK 178 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceee
Confidence 999766688999999999999999999877643321100 00111 133467788899998887543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=148.44 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=96.6
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ ++++.++|+.+.+ ++++||+|++..
T Consensus 46 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~-~~~~fD~v~~~~ 122 (216)
T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRWS-HISWAATDILQFS-TAELFDLIVVAE 122 (216)
T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTCS-SEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred HcccCCCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccCC-CeEEEEcchhhCC-CCCCccEEEEcc
Confidence 456677889999999999999999988 5799999999999999999987544 8999999999987 678999999999
Q ss_pred cccccCCH---HHHHHHHHhcCCCCcEEEEEecc
Q 043471 358 TILHIQDK---PALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 358 ~~~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++|++++ ..+++++.++|||||.+++.++.
T Consensus 123 ~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 123 VLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp CGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred HHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 99999987 46799999999999999998653
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.9e-17 Score=158.35 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=118.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHh--cCCCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERA--IGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.+.++.+|||||||+|.++..+++++ +.+++++|+ +.++. +++. .+...+++++.+|+. .+++
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~~~p-- 246 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-REVP-- 246 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-TCCC--
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-CCCC--
Confidence 4467788888888999999999999999999876 679999999 44444 2222 234567999999997 4555
Q ss_pred CccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCCh--hHHHH--HHhcCCCCCCHHHHHHHHHhC
Q 043471 349 SFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSV--EFSEY--IKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~l~~a 422 (485)
+||+|++..++||+++. ..+|++++++|||||++++.+.......... ..... ....+...++.++|.++|+++
T Consensus 247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~a 326 (348)
T 3lst_A 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTAA 326 (348)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHHT
T ss_pred CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHHC
Confidence 89999999999999877 6999999999999999999987655432221 11111 112234567899999999999
Q ss_pred CCeEEEEee
Q 043471 423 GFVDIIAED 431 (485)
Q Consensus 423 Gf~~~~~~~ 431 (485)
||+++++..
T Consensus 327 Gf~~~~~~~ 335 (348)
T 3lst_A 327 GLRLDRVVG 335 (348)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEEEE
Confidence 999998865
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-18 Score=162.07 Aligned_cols=122 Identities=19% Similarity=0.177 Sum_probs=103.0
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC---C---CCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG---H---FENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~---~---~~~~~~~~~d~~~ 111 (485)
.....++.+.+.+...++.+|||||||+|..+..|++.+.+|+|+|+|+.|++.|+++.. . ..++.+..+|+..
T Consensus 41 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 41 RTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred hHHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 344566677777766778899999999999999999999999999999999999987641 1 1378899999877
Q ss_pred CCCC---CCCCCeeEEEhh-hhhhccCh-----HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 112 PDLT---FSEDSVDMMFSN-WLLMYLSD-----KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 112 ~~~~---~~~~~~D~v~~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++ +++++||+|+|. .+++|+++ ....+++++++++|||||++++..++
T Consensus 121 --~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 121 --LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp --HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 44 678899999998 79999987 56789999999999999999998764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-18 Score=156.09 Aligned_cols=162 Identities=16% Similarity=0.165 Sum_probs=106.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCC-HHHHHHH---HHHhcCCC-CCeEEEEccCCCCCCC-CCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLS-INMISFA---LERAIGLK-CSVEFEVADCTKKTYP-ENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s-~~~~~~a---~~~~~~~~-~~i~~~~~d~~~~~~~-~~~fD~i 353 (485)
..++.+|||||||+|.++..++++. +.+|+|+|+| +.|++.| +++....+ .++.+.++|+.++|.. .+.+|.|
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i 101 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSI 101 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEE
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEE
Confidence 4577899999999999999998654 6799999999 7777776 66554333 3799999999988521 1334444
Q ss_pred EEccccc----c-cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHH-----HHHHHHHhCC
Q 043471 354 YSRDTIL----H-IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVK-----SYGQMLKDAG 423 (485)
Q Consensus 354 ~~~~~~~----~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~aG 423 (485)
+++.... + ..+...++++++|+|||||++++....... .....+. ..+.+.++.. ++.++++++|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~el~~~l~~aG 176 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDS-YEEAEIK----KRGLPLLSKAYFLSEQYKAELSNSG 176 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-------------------CCHHHHHSHHHHHHHHHHT
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEecccc-chhchhh----hcCCCCCChhhcchHHHHHHHHHcC
Confidence 4433211 1 134567899999999999999994322221 1100000 0011222222 4899999999
Q ss_pred CeEEEEeecchHHHHHH-HHHHHHH
Q 043471 424 FVDIIAEDRTEQFVQVL-QRELDAI 447 (485)
Q Consensus 424 f~~~~~~~~~~~~~~~~-~~~~~~~ 447 (485)
|++...+....+|..++ ..|...+
T Consensus 177 f~v~~~~~~~~~~~~~~~~~w~~~~ 201 (225)
T 3p2e_A 177 FRIDDVKELDNEYVKQFNSLWAKRL 201 (225)
T ss_dssp CEEEEEEEECHHHHTTCCSHHHHHH
T ss_pred CCeeeeeecCHHHHHHHHHHHhccc
Confidence 99999999998887666 4455544
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-17 Score=159.26 Aligned_cols=332 Identities=16% Similarity=0.202 Sum_probs=187.3
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (485)
+.....-+++.+... +.+||.++-+-|.++..++.. .+|+.+.-|.-..+..+. ++- ...+ ... +..+.
T Consensus 31 ~~~~~~~l~~~~~~~-~~~~l~~n~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~-~~~--~~~~-~~~-----~~~~~ 99 (381)
T 3dmg_A 31 RDPVHDLLQKTVEPF-GERALDLNPGVGWGSLPLEGR-MAVERLETSRAAFRCLTA-SGL--QARL-ALP-----WEAAA 99 (381)
T ss_dssp SCHHHHHHHTTCCCC-SSEEEESSCTTSTTTGGGBTT-BEEEEEECBHHHHHHHHH-TTC--CCEE-CCG-----GGSCT
T ss_pred CChHHHHHHHHHHHh-CCcEEEecCCCCccccccCCC-CceEEEeCcHHHHHHHHH-cCC--Cccc-cCC-----ccCCc
Confidence 335555667776654 468999999999988887533 677877656555444333 221 1222 111 21235
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh-cceecCCC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE-CQIQDASG 197 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 197 (485)
..||+|+.... .+=.....+..|.++.+.|+|||.|++.-.... ..+.+...++. .+. +
T Consensus 100 ~~~d~v~~~~P-k~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~---------------g~~~~~~~~~~~~~~----~ 159 (381)
T 3dmg_A 100 GAYDLVVLALP-AGRGTAYVQASLVAAARALRMGGRLYLAGDKNK---------------GFERYFKEARALLGY----G 159 (381)
T ss_dssp TCEEEEEEECC-GGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGG---------------THHHHHHHHHHHHSC----E
T ss_pred CCCCEEEEECC-cchhHHHHHHHHHHHHHhCCCCCEEEEEEccHH---------------HHHHHHHHHHhhhcc----c
Confidence 68999886431 111112357888999999999999988533211 22333333331 111 0
Q ss_pred CceeEEEeeeeecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHhccccccCCc-h----HHH
Q 043471 198 NSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGG-I----ETT 272 (485)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~ 272 (485)
..... .....+ ..+....... .....|..+ .+...+ ..+.-....+.+.... . ...
T Consensus 160 ~~~~~-~~~~r~-~~~~~~~~~p------------~~~~~w~~~----~~~~~g-~~~~~~~~pgvFs~~~~d~~t~~ll 220 (381)
T 3dmg_A 160 VVVRR-EGPYRV-ALLEKEKEAP------------PLPSLWRAF----SARILG-AEYTFHHLPGVFSAGKVDPASLLLL 220 (381)
T ss_dssp EEEEE-ETTEEE-EEEECCSCCC------------CCCCCCEEE----EEEETT-EEEEEEECTTCTTTTSCCHHHHHHH
T ss_pred ccccc-ccCcEE-EEEEccCCCC------------CCcccccee----eEEecC-ceEEEEeCCCceeCCCCCHHHHHHH
Confidence 00000 000000 0000000000 000001000 000000 0000000111122111 1 122
Q ss_pred HHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
+.+.+.+ ...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+..++++.+|+.+.+.++++|
T Consensus 221 ~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~f 299 (381)
T 3dmg_A 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARF 299 (381)
T ss_dssp HHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCE
T ss_pred HHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCe
Confidence 2333332 2346789999999999999999988 789999999999999999998765556899999999887666899
Q ss_pred cEEEEcccccc-----cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 351 DVIYSRDTILH-----IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 351 D~i~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
|+|+++..+++ ..+...+++++.++|||||++++...... . +...+... + ..+..+ ++.||+
T Consensus 300 D~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l---~---~~~~l~~~---f---~~v~~l-~~~gF~ 366 (381)
T 3dmg_A 300 DIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL---K---YEPLLEEK---F---GAFQTL-KVAEYK 366 (381)
T ss_dssp EEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS---C---HHHHHHHH---H---SCCEEE-EESSSE
T ss_pred EEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC---C---hHHHHHHh---h---ccEEEE-eCCCEE
Confidence 99999999988 34577899999999999999999843221 1 11111110 0 012223 778999
Q ss_pred EEEEeecch
Q 043471 426 DIIAEDRTE 434 (485)
Q Consensus 426 ~~~~~~~~~ 434 (485)
++.......
T Consensus 367 Vl~a~~~~~ 375 (381)
T 3dmg_A 367 VLFAEKRGR 375 (381)
T ss_dssp EEEEECC--
T ss_pred EEEEEEecc
Confidence 988765543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.8e-17 Score=153.77 Aligned_cols=101 Identities=15% Similarity=0.241 Sum_probs=90.4
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhh-hhhc
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW-LLMY 132 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~-~~~~ 132 (485)
++.+|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++.. +++++++|+.+ +++ +++||+|+|.. +++|
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~d~~~--~~~-~~~fD~v~~~~~~l~~ 123 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP---DAVLHHGDMRD--FSL-GRRFSAVTCMFSSIGH 123 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT---TSEEEECCTTT--CCC-SCCEEEEEECTTGGGG
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC---CCEEEECChHH--CCc-cCCcCEEEEcCchhhh
Confidence 46899999999999999999999999999999999999999863 89999999988 444 68999999998 9999
Q ss_pred cCh-HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 133 LSD-KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 133 ~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+++ .....+++++.++|+|||.+++.+.
T Consensus 124 ~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 124 LAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp SCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 974 3477999999999999999999643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=152.00 Aligned_cols=154 Identities=24% Similarity=0.364 Sum_probs=116.2
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..+.+.+ +++.+|||+|||+|.++..+++. .+++|+|+|+.+++.|+++....+.++++..+|+.+.+++ ++||+
T Consensus 25 ~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~ 99 (243)
T 3d2l_A 25 AWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELP-EPVDA 99 (243)
T ss_dssp HHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCS-SCEEE
T ss_pred HHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCC-CCcCE
Confidence 3444443 45689999999999999999987 6999999999999999998865556799999999988775 88999
Q ss_pred EEEcc-ccccc---CCHHHHHHHHHhcCCCCcEEEEEecccCC---CCCC-----------hhHHH--------------
Q 043471 353 IYSRD-TILHI---QDKPALFKSFFKWLKPGGTVLISDYCKSF---GTPS-----------VEFSE-------------- 400 (485)
Q Consensus 353 i~~~~-~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---~~~~-----------~~~~~-------------- 400 (485)
|++.. +++|+ .+...+++++.++|||||++++....... .... ..+..
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELT 179 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEEEEE
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEEEEE
Confidence 99986 99998 35678899999999999999986432110 0000 00000
Q ss_pred HH------------HhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 401 YI------------KQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 401 ~~------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+. .......++.+++.++|+++||+++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 222 (243)
T 3d2l_A 180 FFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG 222 (243)
T ss_dssp EEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence 00 00112467999999999999999988753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=154.42 Aligned_cols=158 Identities=16% Similarity=0.119 Sum_probs=124.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~ 347 (485)
....+++.+.+.+ .+|||+|||+|..+..+++++ +.+++++|+ +.+++.|++++. ++..+++++.+|+.+ +++
T Consensus 156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-
T ss_pred HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-
Confidence 4566777777777 899999999999999999886 679999999 999999998864 234579999999987 555
Q ss_pred CCccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEecccCCCCCChh--HHHH--HHhcCCCCCCHHHHHHHHHh
Q 043471 348 NSFDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDYCKSFGTPSVE--FSEY--IKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~l~~ 421 (485)
++||+|++..++||+++.. .++++++++|+|||++++.+........... .... ....+...++.++|.+++++
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 311 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGR 311 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHH
Confidence 6799999999999997665 8999999999999999999876544322211 1111 01112345789999999999
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
+||+++.+...
T Consensus 312 aGf~~~~~~~~ 322 (334)
T 2ip2_A 312 GGFAVERIVDL 322 (334)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCceeEEEEC
Confidence 99999887653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-16 Score=155.71 Aligned_cols=159 Identities=20% Similarity=0.195 Sum_probs=124.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+++.+.+.++.+|||||||+|.++..+++.. +.+++++|+ +.+++.|++++.. ...+++++.+|+.+ +++.
T Consensus 172 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~- 248 (360)
T 1tw3_A 172 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPR- 248 (360)
T ss_dssp THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSS-
T ss_pred HHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCC-
Confidence 3567778888888999999999999999999886 579999999 9999999998753 44579999999876 4443
Q ss_pred CccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecc-cCCCCCCh--hHHHH-H-HhcCCCCCCHHHHHHHHHh
Q 043471 349 SFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYC-KSFGTPSV--EFSEY-I-KQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~-~~~~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~l~~ 421 (485)
.||+|++..++||+++. ..++++++++|||||++++.+.. .+...... ..... . ...+...++.++|.++|++
T Consensus 249 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 328 (360)
T 1tw3_A 249 KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAAS 328 (360)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHH
T ss_pred CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHH
Confidence 49999999999999866 58999999999999999999876 33222111 11111 1 1123467899999999999
Q ss_pred CCCeEEEEeecc
Q 043471 422 AGFVDIIAEDRT 433 (485)
Q Consensus 422 aGf~~~~~~~~~ 433 (485)
+||+++.+....
T Consensus 329 aGf~~~~~~~~~ 340 (360)
T 1tw3_A 329 AGLVVEEVRQLP 340 (360)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCCeEEEEEeCC
Confidence 999998876543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=149.62 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=107.6
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccC-CCCCCC-
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC-TKKTYP- 346 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~-~~~~~~- 346 (485)
......++..+ +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++. .+++++++|+ ..+|++
T Consensus 35 ~~l~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~d~~~~~~~~~ 108 (226)
T 3m33_A 35 ELTFDLWLSRL-LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANA----PHADVYEWNGKGELPAGL 108 (226)
T ss_dssp THHHHHHHHHH-CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHC----TTSEEEECCSCSSCCTTC
T ss_pred HHHHHHHHHhc-CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhC----CCceEEEcchhhccCCcC
Confidence 34455555544 367889999999999999999998 789999999999999999983 3799999999 567877
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+++||+|+++ .++..+++++.++|||||+++.. ....+...+.+.++++||++
T Consensus 109 ~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~---------------------~~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 109 GAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYV---------------------GPRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp CCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEE---------------------ESSSCCTHHHHHHHHTTCEE
T ss_pred CCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEe---------------------CCcCCHHHHHHHHHHCCCeE
Confidence 8899999997 47788999999999999999811 02335668999999999999
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
+.+...
T Consensus 162 ~~~~~~ 167 (226)
T 3m33_A 162 VAEDHV 167 (226)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 876543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-17 Score=154.32 Aligned_cols=139 Identities=20% Similarity=0.244 Sum_probs=112.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+.++++..+|+.+.++ +++||+|++..+++|
T Consensus 119 ~~~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 119 ISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCSCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred cCCCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence 36789999999999999999988 7899999999999999999887555589999999998876 789999999999999
Q ss_pred cC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 362 IQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 362 ~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++ +...+++++.++|||||.+++............ ......++.+++.+++.. |+++..+.
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~--~~~~~~~~ 259 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-------LPFSFTFAENELKEYYKD--WEFLEYNE 259 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-------SCCSCCBCTTHHHHHTTT--SEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-------CCccccCCHHHHHHHhcC--CEEEEEEc
Confidence 95 456999999999999999888765443322211 111234567888888855 98887754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=155.72 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=110.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCee
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+++.+...++.+|||+|||+|.++..|++.+.+|+|+|+|+.+++.|+++....+ +++++++|+.+.+ + +++||
T Consensus 110 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~-~~~fD 186 (286)
T 3m70_A 110 GDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN--I-QENYD 186 (286)
T ss_dssp HHHHHHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC--C-CSCEE
T ss_pred HHHHHHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc--c-cCCcc
Confidence 344444444578899999999999999999999999999999999999998754333 8999999998843 3 78999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhh
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (485)
+|+++.+++|++++....+++++.++|+|||.+++........ ........+....+.+...+..
T Consensus 187 ~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 251 (286)
T 3m70_A 187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDD--VPCPLPFSFTFAENELKEYYKD 251 (286)
T ss_dssp EEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSS--SCCSSCCSCCBCTTHHHHHTTT
T ss_pred EEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC--CCCCCCccccCCHHHHHHHhcC
Confidence 9999999999988778899999999999999987754433221 1112222344467778888765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=146.23 Aligned_cols=146 Identities=20% Similarity=0.187 Sum_probs=110.4
Q ss_pred HHHHHH---HHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC---
Q 043471 270 ETTKEF---VAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK--- 342 (485)
Q Consensus 270 ~~~~~~---~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~--- 342 (485)
..+..+ ++.+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++++... .++.++.+|+..
T Consensus 58 ~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~v~~~~~d~~~~~~ 136 (230)
T 1fbn_A 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQE 136 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGG
T ss_pred HHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-CCeEEEECCCCCccc
Confidence 334556 5555677889999999999999999999864 69999999999999999987655 689999999988
Q ss_pred -CCCCCCCccEEEEcccccccCCH---HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 343 -KTYPENSFDVIYSRDTILHIQDK---PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 343 -~~~~~~~fD~i~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
.+++ ++||+|+ ++++++ ..+++++.++|||||++++. +.............+ ..+++. +
T Consensus 137 ~~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~~~~---------~~~~l~-~ 199 (230)
T 1fbn_A 137 YANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDPKEI---------FKEQKE-I 199 (230)
T ss_dssp GTTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCHHHH---------HHHHHH-H
T ss_pred ccccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCHHHh---------hHHHHH-H
Confidence 6666 7899999 455555 77899999999999999997 221111111111111 125677 8
Q ss_pred HHhCCCeEEEEeecc
Q 043471 419 LKDAGFVDIIAEDRT 433 (485)
Q Consensus 419 l~~aGf~~~~~~~~~ 433 (485)
|+++||+++......
T Consensus 200 l~~~Gf~~~~~~~~~ 214 (230)
T 1fbn_A 200 LEAGGFKIVDEVDIE 214 (230)
T ss_dssp HHHHTEEEEEEEECT
T ss_pred HHHCCCEEEEEEccC
Confidence 999999998876543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=151.79 Aligned_cols=116 Identities=28% Similarity=0.406 Sum_probs=97.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..+..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.++++.++|+.+++++ ++
T Consensus 28 ~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~ 105 (252)
T 1wzn_A 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NE 105 (252)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SC
T ss_pred HHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccC-CC
Confidence 34556677766677889999999999999999987 78999999999999999998865555799999999988765 68
Q ss_pred ccEEEEcc-cccccC--CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 350 FDVIYSRD-TILHIQ--DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 350 fD~i~~~~-~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
||+|++.. .++|++ +...++++++++|||||.+++...
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99999874 445543 577899999999999999998644
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=142.16 Aligned_cols=149 Identities=15% Similarity=0.164 Sum_probs=110.8
Q ss_pred HHHHHHHH---HcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFVA---KLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~~---~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
.....++. .+.++||++|||+|||+|.++..+++..| .+|+|+|+|+.|++.+++++...+ ++..+.+|....
T Consensus 61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~-ni~~V~~d~~~p~ 139 (233)
T 4df3_A 61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRR-NIFPILGDARFPE 139 (233)
T ss_dssp HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCT-TEEEEESCTTCGG
T ss_pred HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhc-CeeEEEEeccCcc
Confidence 33444544 45789999999999999999999999763 599999999999999999876544 888888887653
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
++..+++|+|++. +.|..+...++++++++|||||++++........ .............+.|++
T Consensus 140 ~~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d-----------~~~p~~~~~~~ev~~L~~ 206 (233)
T 4df3_A 140 KYRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSID-----------VTTEPSEVYKREIKTLMD 206 (233)
T ss_dssp GGTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHH-----------HHTCCCHHHHHHHHHHHH
T ss_pred ccccccceEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCC-----------CCCChHHHHHHHHHHHHH
Confidence 4566889999874 4455678899999999999999999875332110 000000112344577899
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
+||++++..+.
T Consensus 207 ~GF~l~e~i~L 217 (233)
T 4df3_A 207 GGLEIKDVVHL 217 (233)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCEEEEEEcc
Confidence 99999887654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=141.94 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=110.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++..+ ..++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++. ++++++++|+.+ +++++++||+|
T Consensus 38 ~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~--~~~~~~~~D~i 111 (195)
T 3cgg_A 38 RLIDAM-APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF---PEARWVVGDLSV--DQISETDFDLI 111 (195)
T ss_dssp HHHHHH-SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTSEEEECCTTT--SCCCCCCEEEE
T ss_pred HHHHHh-ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC---CCCcEEEccccc--CCCCCCceeEE
Confidence 444444 346789999999999999999999999999999999999999986 469999999988 45667899999
Q ss_pred Ehh-hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 125 FSN-WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 125 ~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+++ .+++|++.+....+++++.++|+|||.+++....... .+.+.+...++++||..
T Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~-------------~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG-------------WVFGDFLEVAERVGLEL 169 (195)
T ss_dssp EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS-------------CCHHHHHHHHHHHTEEE
T ss_pred EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC-------------cCHHHHHHHHHHcCCEE
Confidence 998 6889998776889999999999999999997653211 36778899999999854
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-18 Score=158.83 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=108.1
Q ss_pred HHHHHHHhhhcCcCcchhhhhcC----CCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeC
Q 043471 10 REIQKNYWMEHSANLTVEAMMLD----SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDF 84 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~ 84 (485)
.++-+.+|+.....|.......+ ..-..|..+.++.+.+.+ ..+|.+|||||||+|..+..+++. +.+|+|||+
T Consensus 13 ~e~~~~~w~~~~~~yd~~~~~l~~~g~~vm~~we~~~m~~~a~~~-~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~ 91 (236)
T 3orh_A 13 GENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIEC 91 (236)
T ss_dssp TCBCHHHHTTSCEEECTTSSEEEETTEEEEEGGGHHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEEC
T ss_pred CchhhhhHhcCcCCCCcchhhhhhcCHHHHHHHHHHHHHHHHHhh-ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeC
Confidence 45568899987766653221111 001123444444555443 356889999999999999999887 568999999
Q ss_pred ChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEh-----hhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 85 IDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFS-----NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 85 s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~-----~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+.+++.|+++....+ +++++.+|+.....++++++||.|+. ...++|..+ .+.++++++|+|||||.+++.
T Consensus 92 ~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~--~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 92 NDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEEC
T ss_pred CHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcc--hhhhhhhhhheeCCCCEEEEE
Confidence 9999999999865433 78999999876545677899999863 556677777 679999999999999999874
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=152.56 Aligned_cols=152 Identities=18% Similarity=0.286 Sum_probs=114.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
+..++..+. .++.+|||||||+|.++..+++. +.+++|+|+|+.+++.|+++... .+..+|+.++++++++||
T Consensus 44 ~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~-----~~~~~d~~~~~~~~~~fD 116 (260)
T 2avn_A 44 IGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPSGAFE 116 (260)
T ss_dssp HHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCTTCEE
T ss_pred HHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcCC-----CEEECcHHHCCCCCCCEE
Confidence 344444442 37789999999999999999987 78999999999999999998651 288899999988889999
Q ss_pred EEEEccccccc-CCHHHHHHHHHhcCCCCcEEEEEecccCCC-------CCChhHHHHHHhcC-----------CCCCCH
Q 043471 352 VIYSRDTILHI-QDKPALFKSFFKWLKPGGTVLISDYCKSFG-------TPSVEFSEYIKQRG-----------YDLHDV 412 (485)
Q Consensus 352 ~i~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~-----------~~~~~~ 412 (485)
+|++..+++|+ +++..+++++.++|||||++++..++.... .............. ..+++.
T Consensus 117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (260)
T 2avn_A 117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKP 196 (260)
T ss_dssp EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCG
T ss_pred EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCH
Confidence 99999877666 789999999999999999999987653210 00001111111110 025678
Q ss_pred HHHHHHHHhCCCeEEEEeecc
Q 043471 413 KSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~~ 433 (485)
+++.++ +||+++.+....
T Consensus 197 ~~l~~l---aGf~~~~~~~~~ 214 (260)
T 2avn_A 197 EDLDSL---EGFETVDIRGIG 214 (260)
T ss_dssp GGGSSC---TTEEEEEEEEEC
T ss_pred HHHHHh---cCceEEEEECCC
Confidence 888777 999998876543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-17 Score=152.88 Aligned_cols=104 Identities=20% Similarity=0.354 Sum_probs=91.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhh-hhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNW-LLM 131 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~-~~~ 131 (485)
++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....+ +++++++|+.+ ++++ ++||+|+++. +++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~-~~fD~v~~~~~~l~ 113 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISN--LNIN-RKFDLITCCLDSTN 113 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGG--CCCS-CCEEEEEECTTGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccccc--CCcc-CCceEEEEcCcccc
Confidence 67899999999999999999999999999999999999998764323 79999999988 4444 8999999998 999
Q ss_pred ccCh-HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 132 YLSD-KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 132 ~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+++ +....+++++.++|+|||.+++..+
T Consensus 114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 9943 4478999999999999999999654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=154.26 Aligned_cols=149 Identities=26% Similarity=0.261 Sum_probs=114.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+.......++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... .++++++++|+.. ++++++
T Consensus 27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~--~~~~~~ 104 (276)
T 3mgg_A 27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS--LPFEDS 104 (276)
T ss_dssp HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG--CCSCTT
T ss_pred HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccccc--CCCCCC
Confidence 33444445567899999999999999999998 67999999999999999987532 3589999999998 567789
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------------cCCCCCCCCChhHHH
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------------RKHNPTHYREPRFYS 184 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 184 (485)
+||+|+++.+++|+++ ...+++++.++|+|||++++.++......... .............+.
T Consensus 105 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 182 (276)
T 3mgg_A 105 SFDHIFVCFVLEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIY 182 (276)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHH
T ss_pred CeeEEEEechhhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHH
Confidence 9999999999999998 55999999999999999999875432110000 001112223456788
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
.+++++||..+.
T Consensus 183 ~~l~~aGf~~v~ 194 (276)
T 3mgg_A 183 PLLQESGFEKIR 194 (276)
T ss_dssp HHHHHTTCEEEE
T ss_pred HHHHHCCCCeEE
Confidence 999999996543
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=153.39 Aligned_cols=154 Identities=14% Similarity=0.164 Sum_probs=119.1
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChH------HHHHHHHHcCCC---CCeEEEEee
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDS------VIKKNEEVNGHF---ENVKFMCAD 108 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~------~~~~a~~~~~~~---~~~~~~~~d 108 (485)
..+..+++.+...++.+|||||||+|.++..++++ + .+|+|+|+|+. +++.|+++.... ++++++++|
T Consensus 30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d 109 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT 109 (275)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence 44567778888888999999999999999999988 4 79999999997 999999876432 479999998
Q ss_pred -ccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc------------------
Q 043471 109 -VTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK------------------ 169 (485)
Q Consensus 109 -~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------------------ 169 (485)
.....+++++++||+|+++.+++|+++. ..+++.+.++++|||++++.+..........
T Consensus 110 ~~~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (275)
T 3bkx_A 110 NLSDDLGPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAP 187 (275)
T ss_dssp CTTTCCGGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSC
T ss_pred hhhhccCCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccc
Confidence 4444466778999999999999999884 3577777778888999999887654321100
Q ss_pred -cCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 170 -RKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 170 -~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
.......+.+.+.+.+.++++||....
T Consensus 188 ~~~~~~~~~~s~~~l~~~l~~aGf~~~~ 215 (275)
T 3bkx_A 188 SDVANIRTLITPDTLAQIAHDNTWTYTA 215 (275)
T ss_dssp CTTCSCCCCCCHHHHHHHHHHHTCEEEE
T ss_pred cccccccccCCHHHHHHHHHHCCCeeEE
Confidence 011223456888999999999996543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=163.53 Aligned_cols=141 Identities=21% Similarity=0.292 Sum_probs=110.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC----------CCCCeEEEEeeccCCC-C---
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG----------HFENVKFMCADVTSPD-L--- 114 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~----------~~~~~~~~~~d~~~~~-~--- 114 (485)
..++.+|||||||+|..+..|++. +.+|+|+|+|+.+++.|+++.. ..++++++++|+.++. +
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 457889999999999999999886 4599999999999999998742 1258999999998731 1
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-------CCCCCCCCChhHHHHHh
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-------KHNPTHYREPRFYSKVF 187 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 187 (485)
++++++||+|+++.+++|+++ ...+++++.++|||||++++.++.......... ..........+.+.+++
T Consensus 161 ~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 161 GVPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp CCCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred CCCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 678899999999999999988 669999999999999999998765432211110 01111223568899999
Q ss_pred hhcceec
Q 043471 188 KECQIQD 194 (485)
Q Consensus 188 ~~~~~~~ 194 (485)
+++||..
T Consensus 239 ~~aGF~~ 245 (383)
T 4fsd_A 239 AEAGFRD 245 (383)
T ss_dssp HHTTCCC
T ss_pred HHCCCce
Confidence 9999954
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-18 Score=155.38 Aligned_cols=108 Identities=19% Similarity=0.158 Sum_probs=90.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCccEEEE-cc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFDVIYS-RD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD~i~~-~~ 357 (485)
..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+.++.++++|+.++ ++++++||+|++ ..
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 567889999999999999999875344999999999999999999876566899999999887 788899999999 55
Q ss_pred cc--c--ccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 358 TI--L--HIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 358 ~~--~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++ + |..++..++++++|+|||||++++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 43 1 2224557899999999999999988643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=156.86 Aligned_cols=143 Identities=12% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..+.+|||||||+|.++..++++ +.+|+++|+ +.+++.|+++.... ++++++.+|+.+..+|++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 45679999999999999999986 568999999 99999999986543 379999999987432344 789999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc--------------CCCCCCCCChhHHHHHhhhccee
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR--------------KHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
.++|+++++...+++++++++|+|||.+++.+........... .......++.+.|.++++++||.
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~ 335 (363)
T 3dp7_A 256 QFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLE 335 (363)
T ss_dssp SCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCe
Confidence 9999999887889999999999999999998876654322110 11122344789999999999997
Q ss_pred cCCC
Q 043471 194 DASG 197 (485)
Q Consensus 194 ~~~g 197 (485)
...-
T Consensus 336 ~v~~ 339 (363)
T 3dp7_A 336 VEEI 339 (363)
T ss_dssp ESCC
T ss_pred EEEE
Confidence 7654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-17 Score=158.20 Aligned_cols=150 Identities=20% Similarity=0.368 Sum_probs=108.9
Q ss_pred HHhccCCCC--CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC---------------------
Q 043471 45 EVLSLLPPY--EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF--------------------- 99 (485)
Q Consensus 45 ~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~--------------------- 99 (485)
..++.+... ++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....
T Consensus 35 ~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (292)
T 3g07_A 35 GRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGE 114 (292)
T ss_dssp GGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------
T ss_pred HHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 344444433 6889999999999999999998 679999999999999999875321
Q ss_pred ---------------------------------------CCeEEEEeeccCCC---CCCCCCCeeEEEhhhhhhcc----
Q 043471 100 ---------------------------------------ENVKFMCADVTSPD---LTFSEDSVDMMFSNWLLMYL---- 133 (485)
Q Consensus 100 ---------------------------------------~~~~~~~~d~~~~~---~~~~~~~~D~v~~~~~~~~~---- 133 (485)
.+++|+++|+.... +++.+++||+|+|..+++|+
T Consensus 115 ~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~ 194 (292)
T 3g07_A 115 EGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW 194 (292)
T ss_dssp ---------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH
T ss_pred cccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC
Confidence 37999999987632 12467899999999999887
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHHHhhh--cceec
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSKVFKE--CQIQD 194 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~ 194 (485)
++....+++++++++|+|||+|++....+........ .........++.+..++.+ +||..
T Consensus 195 ~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~ 263 (292)
T 3g07_A 195 GDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSS 263 (292)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCE
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceE
Confidence 4556889999999999999999996543321100000 0000111246778888888 99954
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=147.45 Aligned_cols=153 Identities=11% Similarity=0.053 Sum_probs=113.4
Q ss_pred HHHHHHcC-CCCCCEEEEECCCC---ChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC---
Q 043471 273 KEFVAKLD-LKPGQKVLDVGCGI---GGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--- 344 (485)
Q Consensus 273 ~~~~~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--- 344 (485)
..+++.+. .....+|||||||+ |.++..+.+.. +.+|+++|+|+.|++.|++++.. ..+++++.+|+.+.+
T Consensus 66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-~~~v~~~~~D~~~~~~~~ 144 (274)
T 2qe6_A 66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-DPNTAVFTADVRDPEYIL 144 (274)
T ss_dssp HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-CTTEEEEECCTTCHHHHH
T ss_pred HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-CCCeEEEEeeCCCchhhh
Confidence 34444443 23447999999999 98877666654 67999999999999999999854 357999999997631
Q ss_pred --------CCCCCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHh--cCCCCCCH
Q 043471 345 --------YPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQ--RGYDLHDV 412 (485)
Q Consensus 345 --------~~~~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 412 (485)
++..+||+|++..++||+++ +..+|++++++|+|||+|++.+...............+.. ....+.+.
T Consensus 145 ~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 224 (274)
T 2qe6_A 145 NHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTP 224 (274)
T ss_dssp HSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCH
T ss_pred ccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCH
Confidence 23358999999999999986 8999999999999999999998765320000111121111 13456789
Q ss_pred HHHHHHHHhCCCeEEE
Q 043471 413 KSYGQMLKDAGFVDII 428 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~ 428 (485)
+++.++| .||++++
T Consensus 225 ~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 225 EEIERQF--GDFELVE 238 (274)
T ss_dssp HHHHHTT--TTCEECT
T ss_pred HHHHHHh--CCCeEcc
Confidence 9999999 5998764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=156.57 Aligned_cols=150 Identities=13% Similarity=0.142 Sum_probs=103.3
Q ss_pred hHHHhccCC-CCCCCcEEEEcCCCCcchHHH----Hhh--cCc--EEEEeCChHHHHHHHHHcCC---CCCeEE--EEee
Q 043471 43 RPEVLSLLP-PYEGKTVLEFGAGIGRFTGEL----AKK--AGH--VIALDFIDSVIKKNEEVNGH---FENVKF--MCAD 108 (485)
Q Consensus 43 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l----~~~--~~~--v~giD~s~~~~~~a~~~~~~---~~~~~~--~~~d 108 (485)
...++..+. ..++.+|||||||+|.++..+ +.+ +.. ++|+|+|++|++.|+++... .+++++ ..++
T Consensus 40 l~~~l~~~~~~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~ 119 (292)
T 2aot_A 40 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKET 119 (292)
T ss_dssp HHHHSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSC
T ss_pred chhHHhhccCCCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecc
Confidence 344555554 356789999999999876543 333 233 39999999999999988642 235544 4555
Q ss_pred ccCCC----CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC-----cc-c--cCCCCCC
Q 043471 109 VTSPD----LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG-----DS-K--RKHNPTH 176 (485)
Q Consensus 109 ~~~~~----~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-----~~-~--~~~~~~~ 176 (485)
+.++. .++++++||+|+++.++||+++ ..+++++++++|||||++++......... .. . .......
T Consensus 120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (292)
T 2aot_A 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQ 197 (292)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCC
T ss_pred hhhhhhhhccccCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhccCCCccc
Confidence 54321 1246789999999999999998 66999999999999999999765431100 00 0 0011223
Q ss_pred CCChhHHHHHhhhcceec
Q 043471 177 YREPRFYSKVFKECQIQD 194 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (485)
+.+++.+.++++++||..
T Consensus 198 ~~~~~~~~~~l~~aGf~~ 215 (292)
T 2aot_A 198 YITSDDLTQMLDNLGLKY 215 (292)
T ss_dssp CCCHHHHHHHHHHHTCCE
T ss_pred CCCHHHHHHHHHHCCCce
Confidence 457888999999999843
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-16 Score=153.86 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=119.3
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+. +.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++. .+++++.+|+.+ +++.+
T Consensus 191 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~p~~- 262 (368)
T 3reo_A 191 MKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-----SGVEHLGGDMFD-GVPKG- 262 (368)
T ss_dssp HHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCCCC-
T ss_pred HHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-----CCCEEEecCCCC-CCCCC-
Confidence 445666665 6777899999999999999999987 679999999 8888776532 479999999987 66654
Q ss_pred ccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChh------HHHH-HH--hcCCCCCCHHHHHHH
Q 043471 350 FDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVE------FSEY-IK--QRGYDLHDVKSYGQM 418 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------~~~~-~~--~~~~~~~~~~~~~~~ 418 (485)
|+|++..++||+++. .++|++++++|||||++++.+........... .... .. ..+...++.++|.++
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~l 341 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQAL 341 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHH
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHH
Confidence 999999999999764 47899999999999999999877554332211 1111 11 123456789999999
Q ss_pred HHhCCCeEEEEeecc
Q 043471 419 LKDAGFVDIIAEDRT 433 (485)
Q Consensus 419 l~~aGf~~~~~~~~~ 433 (485)
|+++||+++++....
T Consensus 342 l~~AGF~~v~~~~~~ 356 (368)
T 3reo_A 342 AMASGFRGFKVASCA 356 (368)
T ss_dssp HHHTTCCEEEEEEEE
T ss_pred HHHCCCeeeEEEEeC
Confidence 999999999886643
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.5e-16 Score=138.59 Aligned_cols=133 Identities=13% Similarity=0.167 Sum_probs=110.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
+....+++.+.+.++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++...+ .++++..+|+.+.....
T Consensus 27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 106 (204)
T 3e05_A 27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL 106 (204)
T ss_dssp HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC
Confidence 444677888889999999999999999999999885 4799999999999999999875322 47999999997654344
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
++||+|++..+++ +...+++++.++|||||++++..... .+.+.+.+.++++||.
T Consensus 107 ~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------~~~~~~~~~l~~~g~~ 161 (204)
T 3e05_A 107 PDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL--------------------DTLTKAVEFLEDHGYM 161 (204)
T ss_dssp CCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH--------------------HHHHHHHHHHHHTTCE
T ss_pred CCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc--------------------ccHHHHHHHHHHCCCc
Confidence 7899999988765 78999999999999999999985431 1356788999999993
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=150.57 Aligned_cols=110 Identities=18% Similarity=0.169 Sum_probs=93.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC--CC-CCCeeEEEhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT--FS-EDSVDMMFSNW 128 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~-~~~~D~v~~~~ 128 (485)
..++.+|||||||+|.++..|++.+.+|+|+|+|+.+++.|+++.. ..+++++++|+.+++.+ +. ...||+|+++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT-AANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC-CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc-ccCceEEECcccccccccccccccCccEEEEcc
Confidence 3567899999999999999999999999999999999999999874 35899999999874321 11 12499999999
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++|+++.....+++++.++|||||++++.+...
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999996668899999999999999999987653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-16 Score=152.43 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=120.2
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+. +.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.|++. .+++++.+|+.+ |++.+
T Consensus 189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~p~~- 260 (364)
T 3p9c_A 189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-----PGVTHVGGDMFK-EVPSG- 260 (364)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCCCC-
T ss_pred HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-----CCeEEEeCCcCC-CCCCC-
Confidence 456777776 7778899999999999999999987 679999999 8888776542 489999999987 77754
Q ss_pred ccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChh------HHHH-HH--hcCCCCCCHHHHHHH
Q 043471 350 FDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE------FSEY-IK--QRGYDLHDVKSYGQM 418 (485)
Q Consensus 350 fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~------~~~~-~~--~~~~~~~~~~~~~~~ 418 (485)
|+|++..++|++++ ..++|++++++|||||++++.+........... .... .. ..+...++.++|.++
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 339 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQAL 339 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHH
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHH
Confidence 99999999999965 458899999999999999999877654332211 0111 11 123456789999999
Q ss_pred HHhCCCeEEEEeecc
Q 043471 419 LKDAGFVDIIAEDRT 433 (485)
Q Consensus 419 l~~aGf~~~~~~~~~ 433 (485)
|+++||+++++....
T Consensus 340 l~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 340 ARGAGFTGVKSTYIY 354 (364)
T ss_dssp HHHTTCCEEEEEEEE
T ss_pred HHHCCCceEEEEEcC
Confidence 999999999887643
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=152.87 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=109.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHh--h-cCcEEEEeCChHHHHHHHHHcCCCC---CeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAK--K-AGHVIALDFIDSVIKKNEEVNGHFE---NVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~giD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
..++.+|||||||+|..+..++. . +.+|+|+|+|+.+++.|+++....+ +++++++|+.+ ++++ ++||+|+
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~fD~v~ 192 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWK--LDTR-EGYDLLT 192 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGG--CCCC-SCEEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhc--CCcc-CCeEEEE
Confidence 45688999999999999999962 2 6799999999999999999876432 59999999998 5555 8999999
Q ss_pred hhhhhhccChHH-HHHHHHHHHhhcccCcEEEEEeccCCCCCccccC----------------------CC-CCCCCChh
Q 043471 126 SNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK----------------------HN-PTHYREPR 181 (485)
Q Consensus 126 ~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~ 181 (485)
++.+++|+++.. ...+++++.++|+|||++++.+............ .. ...+.+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (305)
T 3ocj_A 193 SNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHA 272 (305)
T ss_dssp CCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHH
T ss_pred ECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHH
Confidence 999999997543 4568999999999999999987654322111110 00 11335788
Q ss_pred HHHHHhhhcceec
Q 043471 182 FYSKVFKECQIQD 194 (485)
Q Consensus 182 ~~~~~~~~~~~~~ 194 (485)
.+.+.++++||..
T Consensus 273 ~~~~~l~~aGF~~ 285 (305)
T 3ocj_A 273 QTRAQLEEAGFTD 285 (305)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHCCCEE
Confidence 9999999999965
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.7e-16 Score=144.84 Aligned_cols=111 Identities=16% Similarity=0.082 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC----
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY---- 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~---- 345 (485)
.....+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|+++.... ++..++.+.+.
T Consensus 32 ~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~-----~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 32 SDRENDIFLENIVPGSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR-----CVTIDLLDITAEIPK 105 (261)
T ss_dssp CHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS-----CCEEEECCTTSCCCG
T ss_pred HHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-----cceeeeeeccccccc
Confidence 45678888888999999999999999999999988 789999999999999999998643 22333333322
Q ss_pred -CCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 -PENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 -~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.+++||+|++..+++|+. +...+++++.++| |||+++++..
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 247899999999999984 5677999999999 9999999854
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=142.18 Aligned_cols=127 Identities=18% Similarity=0.112 Sum_probs=105.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
+.++.+|||+|||+|.++..+++....+++|+|+|+.+++.|++++...+. ++++..+|+.+.+ +++||+|+++.++
T Consensus 58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~fD~i~~~~~~ 135 (205)
T 3grz_A 58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--DGKFDLIVANILA 135 (205)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--CSCEEEEEEESCH
T ss_pred ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--CCCceEEEECCcH
Confidence 567889999999999999998876345999999999999999998764332 3999999997753 5899999999888
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
++ ...+++++.++|+|||++++.+.... +...+.++++++||+++.....
T Consensus 136 ~~---~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 136 EI---LLDLIPQLDSHLNEDGQVIFSGIDYL--------------------QLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp HH---HHHHGGGSGGGEEEEEEEEEEEEEGG--------------------GHHHHHHHHHHTTEEEEEEEEE
T ss_pred HH---HHHHHHHHHHhcCCCCEEEEEecCcc--------------------cHHHHHHHHHHcCCceEEeecc
Confidence 76 47889999999999999999754321 3677899999999999876543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=144.55 Aligned_cols=127 Identities=16% Similarity=0.237 Sum_probs=103.5
Q ss_pred CCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS 134 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~ 134 (485)
+.+|||||||+|.++..+++. +|+|+|+.+++.++++ +++++++|+.. +++++++||+|++..+++|++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~~~ 116 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-----GVFVLKGTAEN--LPLKDESFDFALMVTTICFVD 116 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-----TCEEEECBTTB--CCSCTTCEEEEEEESCGGGSS
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-----CCEEEEccccc--CCCCCCCeeEEEEcchHhhcc
Confidence 789999999999999999876 9999999999999986 68999999987 556778999999999999998
Q ss_pred hHHHHHHHHHHHhhcccCcEEEEEeccCCCCC--------ccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 135 DKEVEKLAERMVKWLKVGGYIFFRESCFHQSG--------DSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 135 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+ ...+++++.++|+|||.+++.++...... ..........+.+.+.+.++++++||..
T Consensus 117 ~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~ 182 (219)
T 1vlm_A 117 D--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE 182 (219)
T ss_dssp C--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred C--HHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeE
Confidence 7 56999999999999999999876542110 0001112234457889999999999954
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-17 Score=148.90 Aligned_cols=104 Identities=15% Similarity=0.286 Sum_probs=90.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEh-hhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFS-NWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~-~~~~~ 131 (485)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++. ++++++++|+.+ +++ +++||+|+| ..+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~--~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL---PDATLHQGDMRD--FRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---TTCEEEECCTTT--CCC-SSCEEEEEECTTGGG
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---CCCEEEECCHHH--ccc-CCCCcEEEEcCchHh
Confidence 56789999999999999999999889999999999999999986 579999999988 444 679999995 55899
Q ss_pred ccCh-HHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 132 YLSD-KEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 132 ~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+++ +....+++++.++|+|||.+++.++..
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 9954 457899999999999999999976543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=155.31 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=119.2
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+. +.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++. .+++++.+|+.+ +++.
T Consensus 197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~~~-- 267 (372)
T 1fp1_D 197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-----SGIEHVGGDMFA-SVPQ-- 267 (372)
T ss_dssp HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-----TTEEEEECCTTT-CCCC--
T ss_pred HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-----CCCEEEeCCccc-CCCC--
Confidence 356677775 6778899999999999999999987 679999999 9999877642 369999999987 6654
Q ss_pred ccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEecccCCCCCCh------hHHHHH-H-hcCCCCCCHHHHHHHH
Q 043471 350 FDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDYCKSFGTPSV------EFSEYI-K-QRGYDLHDVKSYGQML 419 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------~~~~~~-~-~~~~~~~~~~~~~~~l 419 (485)
||+|++..++||+++.. .+|++++++|||||++++.+...+...... ...... . ..+...++.++|.++|
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 347 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS 347 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHH
Confidence 99999999999998877 999999999999999999987654432211 111110 0 1223567899999999
Q ss_pred HhCCCeEEEEee
Q 043471 420 KDAGFVDIIAED 431 (485)
Q Consensus 420 ~~aGf~~~~~~~ 431 (485)
+++||+++++..
T Consensus 348 ~~aGf~~~~~~~ 359 (372)
T 1fp1_D 348 KLSGFSKFQVAC 359 (372)
T ss_dssp HHTTCSEEEEEE
T ss_pred HHCCCceEEEEE
Confidence 999999988765
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-17 Score=155.87 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=116.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--------CCCCeEEEEccCCCCC----CC--C
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--------LKCSVEFEVADCTKKT----YP--E 347 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--------~~~~i~~~~~d~~~~~----~~--~ 347 (485)
.++.+|||+|||+|.++..+++..+.+++|+|+|+.|++.|+++... ...++++.++|+...+ ++ +
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 46789999999999999999876567999999999999999988753 2236899999998875 53 4
Q ss_pred CCccEEEEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEecccCC-------------CCC--------ChhHHHHH
Q 043471 348 NSFDVIYSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISDYCKSF-------------GTP--------SVEFSEYI 402 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~~~~~~-------------~~~--------~~~~~~~~ 402 (485)
++||+|++..++||+ . +...++++++++|||||.++++.+.... ... ...+....
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 192 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFG 192 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSC
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCcc
Confidence 589999999999988 3 4578999999999999999998764310 000 00000000
Q ss_pred HhcC----------CCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHH
Q 043471 403 KQRG----------YDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVL 440 (485)
Q Consensus 403 ~~~~----------~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~ 440 (485)
...+ ....+.+++.++++++||+++........+....
T Consensus 193 ~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~~~g~~~~ 240 (313)
T 3bgv_A 193 CKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEEKI 240 (313)
T ss_dssp CEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHHHHHHHHT
T ss_pred ceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHHHHHHHhc
Confidence 0000 1135678999999999999999887665554433
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-17 Score=154.52 Aligned_cols=114 Identities=21% Similarity=0.278 Sum_probs=95.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHh---hcCcEEEEeCChHHHHHHHHHcCC----CCCeEEEEeeccC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDSVIKKNEEVNGH----FENVKFMCADVTS 111 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d~~~ 111 (485)
.......+.+.+. .++.+|||||||+|..+..|++ .+.+|+|+|+|+.+++.|+++... .++++++++|+.+
T Consensus 22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~ 100 (299)
T 3g5t_A 22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD 100 (299)
T ss_dssp CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence 3444445554443 5788999999999999999995 477999999999999999987532 3689999999998
Q ss_pred CCCCCCC------CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 112 PDLTFSE------DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 112 ~~~~~~~------~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++++ ++||+|+++.+++|+ + ...+++++.++|+|||.+++.
T Consensus 101 --~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 101 --FKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp --CGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEE
T ss_pred --CCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEE
Confidence 44555 899999999999999 5 679999999999999999983
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-16 Score=140.23 Aligned_cols=140 Identities=18% Similarity=0.189 Sum_probs=108.9
Q ss_pred HHHHHHcCCCCCCEEEEECCC-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-CCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCG-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-TYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~~~~~~f 350 (485)
+.++-...++++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...+.+++++++|+... ++++++|
T Consensus 45 ~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 124 (230)
T 3evz_A 45 RYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTF 124 (230)
T ss_dssp HHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCE
T ss_pred hhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCce
Confidence 344244456788999999999 99999999987667999999999999999999875555899999997543 4556899
Q ss_pred cEEEEcccccccCC-------------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCC
Q 043471 351 DVIYSRDTILHIQD-------------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHD 411 (485)
Q Consensus 351 D~i~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (485)
|+|+++..+++.++ ...+++++.++|||||++++...... ..
T Consensus 125 D~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------~~ 185 (230)
T 3evz_A 125 DVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------------------KL 185 (230)
T ss_dssp EEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------------------HH
T ss_pred eEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------------------hH
Confidence 99999877765433 47899999999999999998743210 12
Q ss_pred HHHHHHHHHhCCCeEEEEee
Q 043471 412 VKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~~ 431 (485)
...+.+.++++||++..++.
T Consensus 186 ~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 186 LNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHcCCceEEEEe
Confidence 46788999999998776643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=147.64 Aligned_cols=159 Identities=17% Similarity=0.214 Sum_probs=126.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-CCCCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-LKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-~~~~i~~~~~d~~~~~~~~~ 348 (485)
....+++.+.+.+..+|||||||+|.++..+++++ +.+++..|. |.+++.|+++... ...+|+++.+|+.+.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~-- 243 (353)
T 4a6d_A 167 NGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP-- 243 (353)
T ss_dssp HHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--
T ss_pred HHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--
Confidence 34567777777788899999999999999999987 678999997 8899999988753 346899999999876654
Q ss_pred CccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH-----HhcCCCCCCHHHHHHHHHh
Q 043471 349 SFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI-----KQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ 421 (485)
.+|+|++..++|+++|. .++|+++++.|+|||+++|.+....+....+...... ...+....+.++|.++|++
T Consensus 244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~ 323 (353)
T 4a6d_A 244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS 323 (353)
T ss_dssp CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 47999999999999865 5789999999999999999987765543332222211 1123356789999999999
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
+||+++++...
T Consensus 324 AGf~~v~v~~~ 334 (353)
T 4a6d_A 324 AGFRDFQFKKT 334 (353)
T ss_dssp HTCEEEEEECC
T ss_pred CCCceEEEEEc
Confidence 99999987654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-16 Score=138.25 Aligned_cols=136 Identities=12% Similarity=0.111 Sum_probs=110.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
+....++..+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++... ..+++++.+|+.+.....
T Consensus 42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~ 120 (204)
T 3njr_A 42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADL 120 (204)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTS
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccC
Confidence 34456777888889999999999999999999998 889999999999999999987643 337999999998843234
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
.+||+|++..++ +.. +++++.++|||||++++..... .+...+.+.+++.||++.
T Consensus 121 ~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~--------------------~~~~~~~~~l~~~g~~i~ 175 (204)
T 3njr_A 121 PLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL--------------------ESETLLTQLHARHGGQLL 175 (204)
T ss_dssp CCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH--------------------HHHHHHHHHHHHHCSEEE
T ss_pred CCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc--------------------ccHHHHHHHHHhCCCcEE
Confidence 679999987744 566 9999999999999999985421 124567788999999887
Q ss_pred EEee
Q 043471 428 IAED 431 (485)
Q Consensus 428 ~~~~ 431 (485)
.+..
T Consensus 176 ~i~~ 179 (204)
T 3njr_A 176 RIDI 179 (204)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.6e-16 Score=149.78 Aligned_cols=287 Identities=15% Similarity=0.105 Sum_probs=166.0
Q ss_pred HhccCCC-CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHH---HcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 46 VLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEE---VNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 46 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~---~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
+++.+.. ..+.+||.|+.+.|.++..|+.. .++.+.-|--.....+. +++..+ ++++... ... ....
T Consensus 29 ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~-----~~~~ 100 (375)
T 4dcm_A 29 LLQQLDDTEIRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD-----YPQQ 100 (375)
T ss_dssp HHHTTTTCCCCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC-----CCSS
T ss_pred HHHhhhhccCCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc-----cccC
Confidence 4555432 24568999999999999998765 45555334332222222 222111 3555432 122 2467
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhc-cee--cCCC
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKEC-QIQ--DASG 197 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~g 197 (485)
||+|+.... -. .......+..+...|+||+.+++...... ......+.|++. +.. ....
T Consensus 101 ~~~v~~~lp-k~--~~~l~~~L~~l~~~l~~~~~i~~~g~~~~---------------~~~~~~~~l~~~~~~~~~~~a~ 162 (375)
T 4dcm_A 101 PGVVLIKVP-KT--LALLEQQLRALRKVVTSDTRIIAGAKARD---------------IHTSTLELFEKVLGPTTTTLAW 162 (375)
T ss_dssp CSEEEEECC-SC--HHHHHHHHHHHHTTCCTTSEEEEEEEGGG---------------CCHHHHHHHHHHTCCEEECCCB
T ss_pred CCEEEEEcC-CC--HHHHHHHHHHHHhhCCCCCEEEEEecccc---------------hHHHHHHHHHhhcCccchhhhh
Confidence 999876421 12 23367788999999999999977533211 111222333321 110 1110
Q ss_pred CceeEEEeeeeecceEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHhccccccC-CchHHHHHHH
Q 043471 198 NSFELSLVGYKCIGAYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVST-GGIETTKEFV 276 (485)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 276 (485)
.. ....+. ....... ........|. .....+. -....+.|.. ......+.++
T Consensus 163 ~~-~~~~~~--------~~~~~~~--------~~~~~~~~~~--~~~~~~~--------~~~~pg~Fs~~~~d~~~~~ll 215 (375)
T 4dcm_A 163 KK-ARLINC--------TFNEPQL--------ADAPQTVSWK--LEGTDWT--------IHNHANVFSRTGLDIGARFFM 215 (375)
T ss_dssp TT-EEEEEE--------CCCCCCC--------CCCCSCEEEE--ETTTTEE--------EEECTTCTTCSSCCHHHHHHH
T ss_pred ce-eEEEEE--------eCCCCCC--------CCCCCceEEE--ecCCceE--------EEeCCCcccCCcccHHHHHHH
Confidence 10 000000 0000000 0000000010 0000000 0001122222 2223455677
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC----CCeEEEEccCCCCCCCCCCcc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK----CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~----~~i~~~~~d~~~~~~~~~~fD 351 (485)
+.+...++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ .++++..+|+.+ ++++++||
T Consensus 216 ~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD 294 (375)
T 4dcm_A 216 QHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFN 294 (375)
T ss_dssp HTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEE
T ss_pred HhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCee
Confidence 88877777899999999999999999986 6799999999999999999876332 257889999987 56678999
Q ss_pred EEEEcccccccC-----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIYSRDTILHIQ-----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+|+++..+++.. ....+++++.++|||||++++..
T Consensus 295 ~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 295 AVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp EEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 999999987642 23468999999999999999974
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=144.00 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=96.0
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...+++.++. +.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.... .+++++++|+.+ +++++++|
T Consensus 29 ~~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~~~~~~ 104 (227)
T 1ve3_A 29 EPLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK--LSFEDKTF 104 (227)
T ss_dssp HHHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS--CCSCTTCE
T ss_pred HHHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhc--CCCCCCcE
Confidence 3444555443 789999999999999999999889999999999999999875322 579999999988 55667899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|+++.++++....+...+++++.++|+|||.+++.++.
T Consensus 105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 9999999866665555789999999999999999998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=138.98 Aligned_cols=147 Identities=16% Similarity=0.181 Sum_probs=102.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~ 348 (485)
....++.. .++++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+ .++++.+.+...++ +.++
T Consensus 11 ~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 88 (185)
T 3mti_A 11 MSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVRE 88 (185)
T ss_dssp HHHHHHHT-TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCS
T ss_pred HHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccC
Confidence 34444444 4678899999999999999999988 8899999999999999999886322 57999997777642 4468
Q ss_pred CccEEEEccc-ccc--------cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHH
Q 043471 349 SFDVIYSRDT-ILH--------IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQML 419 (485)
Q Consensus 349 ~fD~i~~~~~-~~~--------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 419 (485)
+||+|+++.. +.+ ..+...+++++.++|||||++++..+......... .. ....+.+.+
T Consensus 89 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~-----------~~~~~~~~l 156 (185)
T 3mti_A 89 PIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDME-KD-----------AVLEYVIGL 156 (185)
T ss_dssp CEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHH-HH-----------HHHHHHHHS
T ss_pred CcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHH-HH-----------HHHHHHHhC
Confidence 8999998732 222 13456788999999999999999876433221111 00 123455555
Q ss_pred HhCCCeEEEEee
Q 043471 420 KDAGFVDIIAED 431 (485)
Q Consensus 420 ~~aGf~~~~~~~ 431 (485)
...+|.+.....
T Consensus 157 ~~~~~~~~~~~~ 168 (185)
T 3mti_A 157 DQRVFTAMLYQP 168 (185)
T ss_dssp CTTTEEEEEEEE
T ss_pred CCceEEEEEehh
Confidence 567788776654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-17 Score=155.09 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=85.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC--------CeEEEEeeccC------CCCCCC
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE--------NVKFMCADVTS------PDLTFS 117 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~~d~~~------~~~~~~ 117 (485)
.++.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|+++....+ +++|.++|+.. +..+++
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 34789999999999877666555 5799999999999999998753211 26788888732 112356
Q ss_pred CCCeeEEEhhhhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 118 EDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++||+|+|..++||+ .......++++++++|||||+++++.++
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7899999999999885 3233679999999999999999998764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.9e-16 Score=143.29 Aligned_cols=109 Identities=15% Similarity=0.245 Sum_probs=92.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhH-HHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGD-FYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
+.-+..+.++++.+|||||||+|.++ ..+++..+++|+|+|+|+.|++.|++++. ++ .+++++++|+.+++ +++
T Consensus 112 ~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~ 188 (298)
T 3fpf_A 112 KNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLE 188 (298)
T ss_dssp HHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCC
T ss_pred HHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCC
Confidence 33345678899999999999999766 44555458899999999999999999875 45 68999999998875 689
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
||+|++... .+++.++++++.++|||||++++.+.
T Consensus 189 FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 189 FDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 999998654 57999999999999999999999864
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.7e-16 Score=134.15 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=99.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
.++.+|||+|||+|.++..++++ + +|+|+|+|+.|++. ..++++.++|+.+ ++++++||+|+++..+++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~--------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES--------HRGGNLVRADLLC-SINQESVDVVVFNPPYVP 90 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT--------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBT
T ss_pred CCCCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc--------ccCCeEEECChhh-hcccCCCCEEEECCCCcc
Confidence 45679999999999999999988 4 99999999999987 2378999999987 566689999999998887
Q ss_pred cCCH---------HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 362 IQDK---------PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 362 ~~~~---------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.++. ..+++++.+.| |||++++..... ...+++.++++++||+.+.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------------~~~~~l~~~l~~~gf~~~~~~~ 148 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------------NRPKEVLARLEERGYGTRILKV 148 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------CCHHHHHHHHHHCCCcEEEEEe
Confidence 6544 67889999999 999999985321 2467899999999999887654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=142.80 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=101.6
Q ss_pred HHHHHc-CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 274 EFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 274 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
.+++.+ ...++.+|||||||+|.++..++ .+++|+|+|+. ++.+..+|+.++++++++||+
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~--------------~~~~~~~d~~~~~~~~~~fD~ 118 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL--------------DPRVTVCDMAQVPLEDESVDV 118 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS--------------STTEEESCTTSCSCCTTCEEE
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC--------------CceEEEeccccCCCCCCCEeE
Confidence 344444 24567899999999999988773 58999999987 467889999998888899999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
|++..++|+ .++..+++++.++|+|||++++.++.. ...+.+++.++++++||+++.....
T Consensus 119 v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~------------------~~~~~~~~~~~l~~~Gf~~~~~~~~ 179 (215)
T 2zfu_A 119 AVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS------------------RFEDVRTFLRAVTKLGFKIVSKDLT 179 (215)
T ss_dssp EEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG------------------GCSCHHHHHHHHHHTTEEEEEEECC
T ss_pred EEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC------------------CCCCHHHHHHHHHHCCCEEEEEecC
Confidence 999999975 899999999999999999999987542 1237899999999999999876543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=144.78 Aligned_cols=116 Identities=23% Similarity=0.362 Sum_probs=95.8
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCe
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
...++..+...++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.|+++.... .+++++++|+.+. ++ .++|
T Consensus 30 ~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~--~~-~~~f 106 (252)
T 1wzn_A 30 VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEI--AF-KNEF 106 (252)
T ss_dssp HHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGC--CC-CSCE
T ss_pred HHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhc--cc-CCCc
Confidence 345556666667889999999999999999999999999999999999999875422 3799999999884 33 3689
Q ss_pred eEEEhh-hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFSN-WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|++. .+++|++.+....+++++.++|+|||.+++..++
T Consensus 107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 999986 4567777666889999999999999999986543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=134.31 Aligned_cols=135 Identities=18% Similarity=0.166 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCC-CCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTK-KTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~-~~~~ 346 (485)
....+++.+...++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ .++ ++.+|..+ ++..
T Consensus 13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV 91 (178)
T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC
T ss_pred HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc
Confidence 44567777788889999999999999999999886 6799999999999999999876543 367 77888754 2322
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+++||+|++..+++| ..+++++.++|||||++++..... .+...+.+.++..|+++
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 147 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV--------------------ESEQMLWALRKQFGGTI 147 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH--------------------HHHHHHHHHHHHHCCEE
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc--------------------ccHHHHHHHHHHcCCee
Confidence 278999999999887 788999999999999999986432 12356778888888887
Q ss_pred EEEe
Q 043471 427 IIAE 430 (485)
Q Consensus 427 ~~~~ 430 (485)
..+.
T Consensus 148 ~~~~ 151 (178)
T 3hm2_A 148 SSFA 151 (178)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.6e-16 Score=159.65 Aligned_cols=118 Identities=10% Similarity=0.202 Sum_probs=101.1
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcC--------CCCCeEEEEeecc
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNG--------HFENVKFMCADVT 110 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~ 110 (485)
....+++.+...++.+|||||||+|.++..|++.+ .+|+|+|+|+.|++.|+++.. ..++++++++|+.
T Consensus 709 Rle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~ 788 (950)
T 3htx_A 709 RVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSIL 788 (950)
T ss_dssp HHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTT
T ss_pred HHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchH
Confidence 34456666666688999999999999999999987 699999999999999988432 2357999999999
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+ +++++++||+|++..+++|++++....+++++.++|||| .+++++++.
T Consensus 789 d--Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 789 E--FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp S--CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred h--CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 8 666789999999999999999877778999999999999 888877654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-17 Score=147.75 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=90.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+...+ ..++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++.... .+++++++|+.+...++++++|
T Consensus 51 ~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~f 129 (236)
T 1zx0_A 51 HALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHF 129 (236)
T ss_dssp HHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCE
T ss_pred HHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCce
Confidence 3443333 45678999999999999999988654 8999999999999999976432 4799999999883126788999
Q ss_pred eEEEh-hhhh--hccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 122 DMMFS-NWLL--MYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 122 D~v~~-~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+|++ .+.+ +.......+.++++++++|||||++++.+..
T Consensus 130 D~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred EEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 99999 4432 2222333668899999999999999986543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=154.52 Aligned_cols=139 Identities=18% Similarity=0.318 Sum_probs=102.7
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHH
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVI 89 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~ 89 (485)
..+..||+.+.....+..++.+... ....++.+.+.+...++.+|||||||+|.++..+++.|. +|+|+|+|+ |+
T Consensus 24 ~~d~~Y~~~y~~~~~~~~ml~d~~r---~~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~ 99 (340)
T 2fyt_A 24 DEDGVYFSSYGHYGIHEEMLKDKIR---TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-IL 99 (340)
T ss_dssp ------CCGGGSHHHHHHHHTCHHH---HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HH
T ss_pred cchhhHHHhhcchhHHHHHhcCHHH---HHHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HH
Confidence 4456688876665555566554221 123445666666667889999999999999999999875 899999997 99
Q ss_pred HHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh---hhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 90 KKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWL---LMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 90 ~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~---~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+.|+++.. ..++++++++|+.+ +++++++||+|++..+ +.+... ...++.++.++|||||.++.
T Consensus 100 ~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~Ivs~~~~~~l~~~~~--~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 100 YQAMDIIRLNKLEDTITLIKGKIEE--VHLPVEKVDVIISEWMGYFLLFESM--LDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp HHHHHHHHHTTCTTTEEEEESCTTT--SCCSCSCEEEEEECCCBTTBTTTCH--HHHHHHHHHHHEEEEEEEES
T ss_pred HHHHHHHHHcCCCCcEEEEEeeHHH--hcCCCCcEEEEEEcCchhhccCHHH--HHHHHHHHHhhcCCCcEEEc
Confidence 99988643 22589999999988 5567789999998764 444444 67899999999999999874
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=150.27 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=114.7
Q ss_pred HHHc--CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 276 VAKL--DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 276 ~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
++.+ .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++. .++++..+|+.+ +++ .||+
T Consensus 179 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~d~~~-~~p--~~D~ 249 (352)
T 1fp2_A 179 LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-----NNLTYVGGDMFT-SIP--NADA 249 (352)
T ss_dssp HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-----TTEEEEECCTTT-CCC--CCSE
T ss_pred HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-----CCcEEEeccccC-CCC--CccE
Confidence 4444 35567899999999999999999886 679999999 9999887642 259999999976 555 3999
Q ss_pred EEEcccccccCCHH--HHHHHHHhcCCC---CcEEEEEecccCCCCCCh---hHHHHHHh----cCCCCCCHHHHHHHHH
Q 043471 353 IYSRDTILHIQDKP--ALFKSFFKWLKP---GGTVLISDYCKSFGTPSV---EFSEYIKQ----RGYDLHDVKSYGQMLK 420 (485)
Q Consensus 353 i~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~l~ 420 (485)
|++..++||+++.. .+|++++++||| ||++++.+.......... ........ .+...++.++|.++++
T Consensus 250 v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~ 329 (352)
T 1fp2_A 250 VLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFI 329 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHH
T ss_pred EEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHH
Confidence 99999999998877 999999999999 999999987665433221 11111110 1124568899999999
Q ss_pred hCCCeEEEEee
Q 043471 421 DAGFVDIIAED 431 (485)
Q Consensus 421 ~aGf~~~~~~~ 431 (485)
++||+++.+..
T Consensus 330 ~aGf~~~~~~~ 340 (352)
T 1fp2_A 330 EAGFQHYKISP 340 (352)
T ss_dssp HTTCCEEEEEE
T ss_pred HCCCCeeEEEe
Confidence 99999988765
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=151.48 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=103.8
Q ss_pred chHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc---------CC-CCCeEEE
Q 043471 268 GIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI---------GL-KCSVEFE 336 (485)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~---------~~-~~~i~~~ 336 (485)
....+..+++.+.+.++.+|||||||+|.++..++...++ +++|||+|+.+++.|+++.. ++ ..+++++
T Consensus 158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi 237 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 237 (438)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 3467888999999999999999999999999999987666 59999999999999987531 33 2589999
Q ss_pred EccCCCCCCCC--CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCC
Q 043471 337 VADCTKKTYPE--NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392 (485)
Q Consensus 337 ~~d~~~~~~~~--~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 392 (485)
++|+.++++.+ ..||+|+++..+ +.++....|++++|+|||||++++.+...+..
T Consensus 238 ~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d 294 (438)
T 3uwp_A 238 RGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPLN 294 (438)
T ss_dssp ECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCTT
T ss_pred ECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCCC
Confidence 99999987643 479999998765 45788899999999999999999997665543
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=137.70 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=98.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+..++... +.++.+|||+|||+|.++..+++....+++|+|+|+.+++.|+++... ..++++..+|+.++++++++|
T Consensus 31 ~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~i~~~~~d~~~~~~~~~~f 108 (215)
T 2pxx_A 31 SFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-VPQLRWETMDVRKLDFPSASF 108 (215)
T ss_dssp HHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-CTTCEEEECCTTSCCSCSSCE
T ss_pred HHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-CCCcEEEEcchhcCCCCCCcc
Confidence 344555444 467889999999999999999987323899999999999999998764 247999999999988888899
Q ss_pred cEEEEcccccccC---------------CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQ---------------DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~---------------~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|++..+++++. +...+++++.++|||||++++.++.
T Consensus 109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 161 (215)
T 2pxx_A 109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA 161 (215)
T ss_dssp EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 9999999887664 5688999999999999999998754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=142.15 Aligned_cols=170 Identities=16% Similarity=0.276 Sum_probs=119.6
Q ss_pred eEEeecCchhHHHHHHHHhhccCchhHHHhhhhhhccccchhHHHHHhc------cccccCCc-hHHHH-HHHHHcCCCC
Q 043471 212 AYVKNKKNQNQICWIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFG------VGFVSTGG-IETTK-EFVAKLDLKP 283 (485)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~-~~~~~~~~~~ 283 (485)
..+...+......++...+.......+..|++......+ ..++..+.. ..|++... .+... .++.. .+
T Consensus 30 i~~~~~k~~~~~~Rl~~r~~~~~~~~~~~y~~~l~~~~~-~~e~~~l~~~lt~~~t~FfRd~~~f~~l~~~llp~---~~ 105 (274)
T 1af7_A 30 IVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQN-SAEWQAFINALTTNLTAFFREAHHFPILAEHARRR---HG 105 (274)
T ss_dssp CCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHHHCTT-CTHHHHHHHHHCCCCCCTTTTTTHHHHHHHHHHHS---CS
T ss_pred CCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHccCCC-HHHHHHHHHHHhhcCccccCChHHHHHHHHHccCC---CC
Confidence 345556666777788887777777778888887543111 112333221 23444322 22233 34444 24
Q ss_pred CCEEEEECCCCCh----hHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhcC-----------------------C--
Q 043471 284 GQKVLDVGCGIGG----GDFYMADKF-----DVHVVGIDLSINMISFALERAIG-----------------------L-- 329 (485)
Q Consensus 284 ~~~vLDiGcG~G~----~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~-----------------------~-- 329 (485)
+.+|||+|||||. +++.+++.. +.+|+|+|+|+.|++.|+++... .
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 5799999999998 566666542 25999999999999999987410 0
Q ss_pred -------CCCeEEEEccCCCCCCC-CCCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEE
Q 043471 330 -------KCSVEFEVADCTKKTYP-ENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 330 -------~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+|.|.+.|+.+.|++ .++||+|+|.++++|+++. .++++++++.|+|||++++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 13689999999986665 5789999999999999654 78999999999999999885
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.4e-16 Score=159.79 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcC-------CCCCeEEEEccC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIG-------LKCSVEFEVADC 340 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~-------~~~~i~~~~~d~ 340 (485)
.....+++.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++.. ...++++.++|+
T Consensus 708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa 787 (950)
T 3htx_A 708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI 787 (950)
T ss_dssp HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence 4455666666666788999999999999999998852 6999999999999999986541 113799999999
Q ss_pred CCCCCCCCCccEEEEcccccccCCHH--HHHHHHHhcCCCCcEEEEEeccc
Q 043471 341 TKKTYPENSFDVIYSRDTILHIQDKP--ALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 341 ~~~~~~~~~fD~i~~~~~~~~~~~~~--~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++++++++||+|++..+++|+++.. .+++++.++|||| .++++++..
T Consensus 788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 99998889999999999999998755 5899999999999 888887654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-16 Score=141.98 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=102.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC---CCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP---ENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~---~~~fD~i~~ 355 (485)
+.++.+|||||||+|..+..++... +.+|+|+|+|+.|++.|+++....+ .+++++++|+.+++++ +++||+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 3567899999999999999998643 6799999999999999999876333 2699999999877653 578999999
Q ss_pred cccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 356 RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.. +.+...+++++.++|||||++++..... ... ....+.+.++.+||+++....
T Consensus 148 ~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~----~~~--------------~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 148 RA----VARLSVLSELCLPLVKKNGLFVALKAAS----AEE--------------ELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp EC----CSCHHHHHHHHGGGEEEEEEEEEEECC-----CHH--------------HHHHHHHHHHHTTEEEEEEEE
T ss_pred ec----cCCHHHHHHHHHHhcCCCCEEEEEeCCC----chH--------------HHHHHHHHHHHcCCeEeEEEE
Confidence 76 4678999999999999999998873111 000 134677889999999877654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=136.98 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=108.0
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPD 113 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~ 113 (485)
...+.+..++..+...++.+|||+|||+|.++..+++.+ .+|+|+|+|+++++.|+++.. ..++++++++|+.+.
T Consensus 24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~- 102 (204)
T 3e05_A 24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEG- 102 (204)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTT-
T ss_pred ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhh-
Confidence 455666788889988899999999999999999999986 799999999999999998653 225899999998653
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
....++||+|++..+++ + ...+++++.++|+|||.+++...... ..+.+...+++.||
T Consensus 103 -~~~~~~~D~i~~~~~~~---~--~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 103 -LDDLPDPDRVFIGGSGG---M--LEEIIDAVDRRLKSEGVIVLNAVTLD---------------TLTKAVEFLEDHGY 160 (204)
T ss_dssp -CTTSCCCSEEEESCCTT---C--HHHHHHHHHHHCCTTCEEEEEECBHH---------------HHHHHHHHHHHTTC
T ss_pred -hhcCCCCCEEEECCCCc---C--HHHHHHHHHHhcCCCeEEEEEecccc---------------cHHHHHHHHHHCCC
Confidence 22347899999987665 3 56899999999999999999755321 34567778888886
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-16 Score=150.51 Aligned_cols=148 Identities=14% Similarity=0.166 Sum_probs=115.7
Q ss_pred HHHhccCCC--CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCC
Q 043471 44 PEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 44 ~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~ 116 (485)
..+++.++. .++.+|||||||+|..+..+++. +.+|+++|+| .+++.|+++... .++++++.+|+.+. ++
T Consensus 153 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~ 229 (335)
T 2r3s_A 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY 229 (335)
T ss_dssp HHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC
T ss_pred HHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC
Confidence 455666665 67889999999999999999988 6799999999 999999987432 24699999999873 34
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc-----------CCCCCCCCChhHHHH
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR-----------KHNPTHYREPRFYSK 185 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 185 (485)
+. .||+|++..++||++++...++++++.++|+|||++++.+........... ........+.+.|.+
T Consensus 230 ~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 308 (335)
T 2r3s_A 230 GN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYES 308 (335)
T ss_dssp CS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHH
T ss_pred CC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHH
Confidence 44 499999999999998877889999999999999999998876543211100 000233457889999
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
+++++||...
T Consensus 309 ll~~aGf~~~ 318 (335)
T 2r3s_A 309 MFSNAGFSHS 318 (335)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHCCCCee
Confidence 9999999543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=144.33 Aligned_cols=150 Identities=15% Similarity=0.234 Sum_probs=108.4
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIK 90 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~ 90 (485)
..+.||+..+..+......+......|.......+++.+. ..++.+|||||||+|.++..++ .+|+|+|+|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~--- 97 (215)
T 2zfu_A 24 AAQRLFQEDPEAFLLYHRGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIR---NPVHCFDLASL--- 97 (215)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS---
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhcccchhHHHHHHHHHhccCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC---
Confidence 3456666654444322222211222234434444555543 3567899999999999988873 79999999997
Q ss_pred HHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc
Q 043471 91 KNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR 170 (485)
Q Consensus 91 ~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (485)
+++++++|+.+ +++++++||+|+++.++|+ .+ ...+++++.++|+|||.+++.+....
T Consensus 98 ----------~~~~~~~d~~~--~~~~~~~fD~v~~~~~l~~-~~--~~~~l~~~~~~L~~gG~l~i~~~~~~------- 155 (215)
T 2zfu_A 98 ----------DPRVTVCDMAQ--VPLEDESVDVAVFCLSLMG-TN--IRDFLEEANRVLKPGGLLKVAEVSSR------- 155 (215)
T ss_dssp ----------STTEEESCTTS--CSCCTTCEEEEEEESCCCS-SC--HHHHHHHHHHHEEEEEEEEEEECGGG-------
T ss_pred ----------CceEEEecccc--CCCCCCCEeEEEEehhccc-cC--HHHHHHHHHHhCCCCeEEEEEEcCCC-------
Confidence 57789999988 5677889999999999875 55 67999999999999999999876421
Q ss_pred CCCCCCCCChhHHHHHhhhcceecC
Q 043471 171 KHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
..+.+.+...++++||...
T Consensus 156 ------~~~~~~~~~~l~~~Gf~~~ 174 (215)
T 2zfu_A 156 ------FEDVRTFLRAVTKLGFKIV 174 (215)
T ss_dssp ------CSCHHHHHHHHHHTTEEEE
T ss_pred ------CCCHHHHHHHHHHCCCEEE
Confidence 1277889999999999653
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=134.05 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=100.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CC--eEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CS--VEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~--i~~~~~d~~~~~~~ 346 (485)
.....+++.+...++.+|||+|||+|.++..+++. +.+++|+|+++.+++.|++++...+ .+ +++..+|+.+. ++
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~ 116 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN-VK 116 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT-CT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc-cc
Confidence 56677888888888999999999999999999988 8899999999999999999876433 23 99999999873 45
Q ss_pred CCCccEEEEcccccc-cCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTILH-IQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++||+|++..++++ ..+...+++++.++|+|||.+++....
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 678999999988877 356789999999999999999999654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-16 Score=143.35 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=88.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++.. . .++++|+.+ +++++++||+|++..++.|+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~--~--~~~~~d~~~--~~~~~~~fD~v~~~~~~~~~ 127 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV--K--NVVEAKAED--LPFPSGAFEAVLALGDVLSY 127 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC--S--CEEECCTTS--CCSCTTCEEEEEECSSHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC--C--CEEECcHHH--CCCCCCCEEEEEEcchhhhc
Confidence 67899999999999999999999999999999999999999865 2 289999988 55678899999998766665
Q ss_pred -ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 134 -SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 134 -~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++ ...+++++.++|+|||.+++..++
T Consensus 128 ~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 128 VEN--KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccc--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 55 679999999999999999998665
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=135.71 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=103.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRD 357 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~ 357 (485)
.++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ .++.++.+|+.+++ +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 357799999999999999999886 5799999999999999999875322 48999999999876 6778999999986
Q ss_pred cccccC--------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 358 TILHIQ--------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 358 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
...+.. ....+++++.++|+|||.+++..... . ....+.+.++++||+.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~-------------~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR-------G-------------LFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH-------H-------------HHHHHHHHHHHHTCEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH-------H-------------HHHHHHHHHHHCCCeeeec
Confidence 644332 23689999999999999999974211 0 1245677888899988776
Q ss_pred e
Q 043471 430 E 430 (485)
Q Consensus 430 ~ 430 (485)
.
T Consensus 180 ~ 180 (214)
T 1yzh_A 180 W 180 (214)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-16 Score=137.00 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=84.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhh-
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNW- 128 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~- 128 (485)
..++.+|||+|||+|.++..|++.+.+|+|+|+|+.|++.|+++... .+++++++.+...+. .+.+++||+|+++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~-~~~~~~fD~v~~~~~ 98 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLD-HYVREPIRAAIFNLG 98 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGG-GTCCSCEEEEEEEEC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHH-hhccCCcCEEEEeCC
Confidence 35688999999999999999999999999999999999999987532 258999998877632 13467899998873
Q ss_pred hhhc-----c-ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 129 LLMY-----L-SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 129 ~~~~-----~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+++ . .......+++++.++|||||.+++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 99 YLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp -----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2222 0 1233668899999999999999997654
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=144.45 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=95.4
Q ss_pred HHhccCC-CCCCCcEEEEcCCC---CcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC----
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGI---GRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL---- 114 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---- 114 (485)
++++.+. .....+|||||||+ |.++..+.+. +.+|+|+|+|+.|++.|+++....++++++++|+.+.+.
T Consensus 67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~ 146 (274)
T 2qe6_A 67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNH 146 (274)
T ss_dssp HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHS
T ss_pred HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhcc
Confidence 3344444 23447999999999 9887766664 579999999999999999988655689999999976321
Q ss_pred -----CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 115 -----TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 115 -----~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.++.++||+|+++.++||+++.....++++++++|+|||+|++++...
T Consensus 147 ~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 147 PDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred chhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 123358999999999999987667899999999999999999998764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-15 Score=140.77 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=106.3
Q ss_pred HHHcCCC-CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CCCCCc
Q 043471 276 VAKLDLK-PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YPENSF 350 (485)
Q Consensus 276 ~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~~~~f 350 (485)
...+.++ ++.+|||+|||+|.++..++++...+|+|+|+++.+++.|++++. ++..+++++++|+.+.+ +++++|
T Consensus 41 ~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~f 120 (259)
T 3lpm_A 41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERA 120 (259)
T ss_dssp HHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCE
T ss_pred HHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCc
Confidence 3344666 789999999999999999999865599999999999999999886 44457999999998864 457899
Q ss_pred cEEEEccccccc--------------------CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCC
Q 043471 351 DVIYSRDTILHI--------------------QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410 (485)
Q Consensus 351 D~i~~~~~~~~~--------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
|+|+++..+... .+...+++.+.++|||||++++... ..
T Consensus 121 D~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---------------------~~ 179 (259)
T 3lpm_A 121 DIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---------------------PE 179 (259)
T ss_dssp EEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---------------------TT
T ss_pred cEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---------------------HH
Confidence 999998665433 1246799999999999999999621 12
Q ss_pred CHHHHHHHHHhCCCeEEEEee
Q 043471 411 DVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~~~ 431 (485)
...++.+.+++.||....+..
T Consensus 180 ~~~~~~~~l~~~~~~~~~~~~ 200 (259)
T 3lpm_A 180 RLLDIIDIMRKYRLEPKRIQF 200 (259)
T ss_dssp THHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEEE
Confidence 355677888888888776554
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=136.41 Aligned_cols=108 Identities=19% Similarity=0.328 Sum_probs=91.8
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCeeE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
+.+++++|.+|||+|||+|.++..+++. | .+|+|+|+|+.|++.+++++...+|+..+.+|...+. .++..+++|+
T Consensus 71 ~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 71 IELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp SCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 4567889999999999999999999997 4 4799999999999999998887789999999987753 3456789999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|++. +.|..+ ...++.++++.|||||.++++.
T Consensus 151 Vf~d--~~~~~~--~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 151 LYAD--VAQPEQ--AAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEC--CCCTTH--HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEe--ccCChh--HHHHHHHHHHhccCCCEEEEEE
Confidence 9874 344444 5689999999999999999864
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=135.45 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=100.7
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC---CCCCccEE
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY---PENSFDVI 353 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~i 353 (485)
..+++++|.+|||+|||. +++|+|+.|++.|+++... ++++.++|+.++++ ++++||+|
T Consensus 6 ~~~g~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~---~~~~~~~d~~~~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 6 ADFGISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN---EGRVSVENIKQLLQSAHKESSFDII 67 (176)
T ss_dssp TTTTCCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT---TSEEEEEEGGGGGGGCCCSSCEEEE
T ss_pred hccCCCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc---CcEEEEechhcCccccCCCCCEeEE
Confidence 344678999999999995 2399999999999998643 58999999998876 78899999
Q ss_pred EEccccccc-CCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 354 YSRDTILHI-QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 354 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++..+++|+ ++...++++++|+|||||++++.++....... .....+.+++.++|+++|| +. +..
T Consensus 68 ~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~aGf-i~-~~~ 133 (176)
T 2ld4_A 68 LSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDN-----------NSKVKTASKLCSALTLSGL-VE-VKE 133 (176)
T ss_dssp EECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCS-----------SSSSCCHHHHHHHHHHTTC-EE-EEE
T ss_pred EECChhhhcccCHHHHHHHHHHHCCCCEEEEEEccccccccc-----------ccccCCHHHHHHHHHHCCC-cE-eec
Confidence 999999999 99999999999999999999997543221110 1223578999999999999 44 443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=153.98 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=108.7
Q ss_pred HHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHH
Q 043471 12 IQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIK 90 (485)
Q Consensus 12 ~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~ 90 (485)
....||+.++..+.+..++.+.. .....++.+++.+...++.+|||||||+|.++..+++.|. +|+|+|+| +|++
T Consensus 24 ~~~~yf~~ya~~~~~~~~l~d~~---r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~ 99 (376)
T 3r0q_C 24 DYAQYFCTYSFLYHQKDMLSDRV---RMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMAD 99 (376)
T ss_dssp ----CTTGGGCHHHHHHHHTCHH---HHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHH
T ss_pred cHHHHHHHHHHhHHHHHHhcChH---HHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHH
Confidence 44678888777777777765432 1224456666767778899999999999999999999987 99999999 9999
Q ss_pred HHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 91 KNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 91 ~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.|+++.. ...+++++++|+.+++ ++ ++||+|++..+.+++.. .....+++++.++|+|||.++++...
T Consensus 100 ~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 100 HARALVKANNLDHIVEVIEGSVEDIS--LP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp HHHHHHHHTTCTTTEEEEESCGGGCC--CS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred HHHHHHHHcCCCCeEEEEECchhhcC--cC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 9988643 2246999999999844 44 89999999776666532 23678999999999999999885443
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-16 Score=143.20 Aligned_cols=114 Identities=12% Similarity=0.083 Sum_probs=94.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC-CCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS-EDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~D~v~~~~~~~ 131 (485)
.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++. ++++++++|+.+. ++++ +++||+|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~-~~~~~~~~fD~v~~~---- 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA---PHADVYEWNGKGE-LPAGLGAPFGLIVSR---- 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC---TTSEEEECCSCSS-CCTTCCCCEEEEEEE----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC---CCceEEEcchhhc-cCCcCCCCEEEEEeC----
Confidence 56789999999999999999999999999999999999999983 6899999999532 6667 7899999987
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.+ ...+++++.++|||||.++... .....+.+...+.++||..
T Consensus 119 --~~--~~~~l~~~~~~LkpgG~l~~~~----------------~~~~~~~~~~~l~~~Gf~~ 161 (226)
T 3m33_A 119 --RG--PTSVILRLPELAAPDAHFLYVG----------------PRLNVPEVPERLAAVGWDI 161 (226)
T ss_dssp --SC--CSGGGGGHHHHEEEEEEEEEEE----------------SSSCCTHHHHHHHHTTCEE
T ss_pred --CC--HHHHHHHHHHHcCCCcEEEEeC----------------CcCCHHHHHHHHHHCCCeE
Confidence 22 4478999999999999998110 0114457888999999854
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-16 Score=135.99 Aligned_cols=108 Identities=12% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRDT 358 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~~ 358 (485)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...+ .+++++++|+.+.+ +++++||+|++...
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 5788999999999999998887644589999999999999999876333 47999999987753 34689999999988
Q ss_pred cccc-CCHHHHHHHHHh--cCCCCcEEEEEeccc
Q 043471 359 ILHI-QDKPALFKSFFK--WLKPGGTVLISDYCK 389 (485)
Q Consensus 359 ~~~~-~~~~~~l~~~~~--~LkpgG~l~i~~~~~ 389 (485)
+++. ++...+++++.+ +|+|||.+++.....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 8775 678899999999 999999999986544
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-15 Score=144.22 Aligned_cols=149 Identities=13% Similarity=0.241 Sum_probs=116.2
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~ 117 (485)
.+.+++.++..++.+|||||||+|.++..++++ +.+|+++|+ +.+++.|+++... .++++++.+|+.+. +++
T Consensus 179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~ 255 (359)
T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--SYP 255 (359)
T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--CCC
T ss_pred HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--CCC
Confidence 346677777777889999999999999999998 459999999 9999999987532 23699999999874 444
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc------------ccCCCCCCCCChhHHHH
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS------------KRKHNPTHYREPRFYSK 185 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 185 (485)
+ +|+|++..++||++++...+++++++++|+|||++++.+......... ........+.+.+.|.+
T Consensus 256 ~--~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ 333 (359)
T 1x19_A 256 E--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKE 333 (359)
T ss_dssp C--CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHH
T ss_pred C--CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHH
Confidence 3 399999999999998778899999999999999999987654332100 00111223368889999
Q ss_pred HhhhcceecCC
Q 043471 186 VFKECQIQDAS 196 (485)
Q Consensus 186 ~~~~~~~~~~~ 196 (485)
+++++||....
T Consensus 334 ll~~aGf~~v~ 344 (359)
T 1x19_A 334 ILESLGYKDVT 344 (359)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHCCCceEE
Confidence 99999996543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=136.70 Aligned_cols=113 Identities=19% Similarity=0.133 Sum_probs=96.8
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~ 116 (485)
.+.....+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++... .++++++.+|+.. ...
T Consensus 62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~ 139 (210)
T 3lbf_A 62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ--GWQ 139 (210)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--CCG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCccc--CCc
Confidence 445567788888888899999999999999999999999999999999999999987542 3479999999987 334
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++++||+|++..+++|+++ ++.++|+|||++++....
T Consensus 140 ~~~~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 5689999999999999885 478999999999997654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-16 Score=138.81 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=95.5
Q ss_pred cChhhhHHHhccCCC---CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPP---YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~ 111 (485)
.....++.+++.+.. .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++... .++++++++|+.+
T Consensus 25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~ 104 (189)
T 3p9n_A 25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAA 104 (189)
T ss_dssp -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHH
T ss_pred CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHH
Confidence 444555566555532 5788999999999999998888765 799999999999999987532 2589999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEecc
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRESC 161 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~ 161 (485)
....+++++||+|+++..+++. .+...++++++.+ +|+|||.+++....
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVD-SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred HHhhccCCCccEEEECCCCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 4222346899999998776654 2337799999999 99999999997654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=146.81 Aligned_cols=108 Identities=20% Similarity=0.294 Sum_probs=89.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC---------CCCCeEEEEeeccCCCC--CC--CCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG---------HFENVKFMCADVTSPDL--TF--SED 119 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~---------~~~~~~~~~~d~~~~~~--~~--~~~ 119 (485)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ...+++++++|+...++ ++ +++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 6789999999999999999876 6699999999999999998753 22379999999988541 13 345
Q ss_pred CeeEEEhhhhhhcc--ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 120 SVDMMFSNWLLMYL--SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 120 ~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+||+|+|+.++||+ +.+....+++++.++|+|||.++++.+.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 99999999999998 3344779999999999999999998664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-16 Score=134.19 Aligned_cols=127 Identities=20% Similarity=0.253 Sum_probs=100.0
Q ss_pred hhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCC
Q 043471 41 EERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 41 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (485)
+....+++.+.. .++.+|||+|||+|.++..+++++ +|+|+|+|+.|++. .++++++++|+.+ ++++
T Consensus 8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-------~~~~~~~~~d~~~---~~~~ 76 (170)
T 3q87_B 8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-------HRGGNLVRADLLC---SINQ 76 (170)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-------CSSSCEEECSTTT---TBCG
T ss_pred ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-------ccCCeEEECChhh---hccc
Confidence 344455555544 567799999999999999999999 99999999999987 2689999999976 2355
Q ss_pred CCeeEEEhhhhhhccChH-------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 119 DSVDMMFSNWLLMYLSDK-------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
++||+|+++..+++.++. ....+++++.+.| |||.+++..... ...+.+.+.++++|
T Consensus 77 ~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---------------~~~~~l~~~l~~~g 140 (170)
T 3q87_B 77 ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---------------NRPKEVLARLEERG 140 (170)
T ss_dssp GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---------------GCHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---------------CCHHHHHHHHHHCC
Confidence 899999998777765432 2357889999988 999999976532 15667888999988
Q ss_pred eec
Q 043471 192 IQD 194 (485)
Q Consensus 192 ~~~ 194 (485)
|..
T Consensus 141 f~~ 143 (170)
T 3q87_B 141 YGT 143 (170)
T ss_dssp CEE
T ss_pred CcE
Confidence 854
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=142.05 Aligned_cols=133 Identities=15% Similarity=0.228 Sum_probs=107.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC-C-CCeEEEEccCCCCCCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL-K-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~-~-~~i~~~~~d~~~~~~~~~ 348 (485)
..+++.+.+.++.+|||+|||+|.++..+++.. +.+|+|+|+++.+++.|++++... + .++++..+|+.+ +++++
T Consensus 100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~-~~~~~ 178 (275)
T 1yb2_A 100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD-FISDQ 178 (275)
T ss_dssp ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT-CCCSC
T ss_pred HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc-cCcCC
Confidence 456677788899999999999999999999873 579999999999999999998654 3 479999999987 56678
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+||+|++ +++++..+++++.++|||||++++.+... .....+.+.++++||..++
T Consensus 179 ~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~--------------------~~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 179 MYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF--------------------DQSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp CEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH--------------------HHHHHHHHHSGGGTEEEEE
T ss_pred CccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH--------------------HHHHHHHHHHHHCCCeEEE
Confidence 8999998 67788999999999999999999986421 0135677888889999887
Q ss_pred Eee
Q 043471 429 AED 431 (485)
Q Consensus 429 ~~~ 431 (485)
...
T Consensus 234 ~~~ 236 (275)
T 1yb2_A 234 TVE 236 (275)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.5e-15 Score=132.92 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=101.8
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCC-CeEEEEeeccCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFE-NVKFMCADVTSPDLT 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~-~~~~~~~d~~~~~~~ 115 (485)
..+.+..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+++++.|+++.. ..+ +++++++|+.+. .
T Consensus 40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~--~ 117 (204)
T 3njr_A 40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA--L 117 (204)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG--G
T ss_pred cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh--c
Confidence 34556677888888889999999999999999999999999999999999999998752 223 899999998762 2
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
...+.||+|++...+ + .. +++++.++|+|||.+++...... ........+++.|+
T Consensus 118 ~~~~~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~~---------------~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 118 ADLPLPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTLE---------------SETLLTQLHARHGG 172 (204)
T ss_dssp TTSCCCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSHH---------------HHHHHHHHHHHHCS
T ss_pred ccCCCCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCcc---------------cHHHHHHHHHhCCC
Confidence 233579999987633 2 44 99999999999999999765321 33455666776664
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-15 Score=128.92 Aligned_cols=134 Identities=16% Similarity=0.173 Sum_probs=111.2
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
......+++.+...++.+|||+|||+|.++..+++ .+.+++|+|+|+.+++.|++++...+ .++++..+|+.+ ++++
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDK 98 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGG
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccC
Confidence 35566777888888889999999999999999998 47799999999999999999876443 479999999887 6666
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++||+|++..+ .+...+++++.++ |||.+++..... .....+.+.++++||.+.
T Consensus 99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~--------------------~~~~~~~~~l~~~g~~~~ 152 (183)
T 2yxd_A 99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL--------------------ENAAKIINEFESRGYNVD 152 (183)
T ss_dssp CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH--------------------HHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc--------------------ccHHHHHHHHHHcCCeEE
Confidence 79999999987 6789999999999 999999986421 124568899999999776
Q ss_pred EEe
Q 043471 428 IAE 430 (485)
Q Consensus 428 ~~~ 430 (485)
.++
T Consensus 153 ~~~ 155 (183)
T 2yxd_A 153 AVN 155 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=134.08 Aligned_cols=114 Identities=16% Similarity=0.183 Sum_probs=93.1
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC--C-CeEEEEeeccCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF--E-NVKFMCADVTSPDL 114 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~--~-~~~~~~~d~~~~~~ 114 (485)
.+.+..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... + ++ ++.+|+.. .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~-~~ 88 (178)
T 3hm2_A 11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR-AF 88 (178)
T ss_dssp HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG-GG
T ss_pred HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh-hh
Confidence 355677788888888899999999999999999988 679999999999999999875332 3 68 88888754 24
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+..+++||+|+++.+++| ..+++++.++|+|||.+++....
T Consensus 89 ~~~~~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 89 DDVPDNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp GGCCSCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred hccCCCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence 333389999999998887 36999999999999999997654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=139.42 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=105.8
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
..+... +.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++....+..+++..+|+.+. +++++||+|
T Consensus 112 ~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~-~~~~~fD~V 188 (254)
T 2nxc_A 112 KALARH-LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA-LPFGPFDLL 188 (254)
T ss_dssp HHHHHH-CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH-GGGCCEEEE
T ss_pred HHHHHh-cCCCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc-CcCCCCCEE
Confidence 334433 567889999999999999998886 66999999999999999998764443388888887662 446789999
Q ss_pred EEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 354 YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+++...++ ...+++++.++|||||+++++.... ...+.+.+.++++||+++....
T Consensus 189 v~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~--------------------~~~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 189 VANLYAEL---HAALAPRYREALVPGGRALLTGILK--------------------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG--------------------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred EECCcHHH---HHHHHHHHHHHcCCCCEEEEEeecc--------------------CCHHHHHHHHHHCCCEEEEEec
Confidence 99765543 5788999999999999999985432 1357899999999999987754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=137.62 Aligned_cols=115 Identities=21% Similarity=0.233 Sum_probs=97.9
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
...+.....+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....++++++++|+.+. + .
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~-~-~ 130 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG-Y-E 130 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC-C-G
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccc-c-c
Confidence 3445566778888888889999999999999999999999999999999999999999876545899999999762 2 2
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.+++||+|++..+++|+.+ ++.++|+|||.+++....
T Consensus 131 ~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp GGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 4678999999999999874 488899999999997653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=139.57 Aligned_cols=137 Identities=20% Similarity=0.268 Sum_probs=108.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++.+. .++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+ .++++.++|+.+. +++
T Consensus 97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~-~~~ 174 (276)
T 2b3t_A 97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA-LAG 174 (276)
T ss_dssp HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG-GTT
T ss_pred HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh-ccc
Confidence 45566667665 667899999999999999999765 5799999999999999999876333 2699999998763 446
Q ss_pred CCccEEEEccc-------------ccccC------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHH
Q 043471 348 NSFDVIYSRDT-------------ILHIQ------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYI 402 (485)
Q Consensus 348 ~~fD~i~~~~~-------------~~~~~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~ 402 (485)
++||+|+++.. ++|.+ +...+++++.++|||||++++..
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~---------------- 238 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH---------------- 238 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC----------------
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE----------------
Confidence 78999999843 33332 34678999999999999999872
Q ss_pred HhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 403 KQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
.....+.+.++++++||+.+.+
T Consensus 239 -----~~~~~~~~~~~l~~~Gf~~v~~ 260 (276)
T 2b3t_A 239 -----GWQQGEAVRQAFILAGYHDVET 260 (276)
T ss_dssp -----CSSCHHHHHHHHHHTTCTTCCE
T ss_pred -----CchHHHHHHHHHHHCCCcEEEE
Confidence 1234678999999999986654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=146.01 Aligned_cols=149 Identities=17% Similarity=0.189 Sum_probs=115.9
Q ss_pred HHHHHc--CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+++.+ .+.++.+|||||||+|.++..+++++ +.+++++|+ +.+++.|++ . .+++++.+|+.+ +++ +|
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~d~~~-~~~--~~ 252 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----N-ENLNFVGGDMFK-SIP--SA 252 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----C-SSEEEEECCTTT-CCC--CC
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----C-CCcEEEeCccCC-CCC--Cc
Confidence 455555 34566799999999999999999987 679999999 788877654 2 359999999987 665 49
Q ss_pred cEEEEcccccccCCHH--HHHHHHHhcCCC---CcEEEEEecccCCCCCCh---hHHH---H--HHhcCCCCCCHHHHHH
Q 043471 351 DVIYSRDTILHIQDKP--ALFKSFFKWLKP---GGTVLISDYCKSFGTPSV---EFSE---Y--IKQRGYDLHDVKSYGQ 417 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~--~~l~~~~~~Lkp---gG~l~i~~~~~~~~~~~~---~~~~---~--~~~~~~~~~~~~~~~~ 417 (485)
|+|++..++||+++.. .+|++++++|+| ||++++.+.......... .... . ....+...++.++|.+
T Consensus 253 D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ 332 (358)
T 1zg3_A 253 DAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEK 332 (358)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHH
Confidence 9999999999998876 999999999999 999999987655433221 1111 1 1112335678999999
Q ss_pred HHHhCCCeEEEEee
Q 043471 418 MLKDAGFVDIIAED 431 (485)
Q Consensus 418 ~l~~aGf~~~~~~~ 431 (485)
+|+++||+++++..
T Consensus 333 ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 333 LIYDAGFSSYKITP 346 (358)
T ss_dssp HHHHTTCCEEEEEE
T ss_pred HHHHcCCCeeEEEe
Confidence 99999999988765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-16 Score=151.04 Aligned_cols=143 Identities=27% Similarity=0.383 Sum_probs=102.0
Q ss_pred HHHHHHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChH
Q 043471 9 EREIQKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDS 87 (485)
Q Consensus 9 ~~~~~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~ 87 (485)
.++.+..|++.|+....|.+|+.|..+.. .+++.|.+.....+|++|||||||+|.+++.+|+.|+ +|+|||.|+
T Consensus 41 ~~~~d~~Yf~sY~~~~iH~~ML~D~~Rt~---aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~- 116 (376)
T 4hc4_A 41 KRERDQLYYECYSDVSVHEEMIADRVRTD---AYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA- 116 (376)
T ss_dssp --------CCCHHHHHHHHHHHHCHHHHH---HHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-
T ss_pred cccchhhhhhhccCcHHHHHHhCCHHHHH---HHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-
Confidence 34556778888777777888988744322 3445555544456788999999999999999999886 799999996
Q ss_pred HHHHHHHHc---CCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEE
Q 043471 88 VIKKNEEVN---GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 88 ~~~~a~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++.|++.. +...+|+++.++++++++| ++||+|+|.++-+.+- ......++....|+|+|||.++.+
T Consensus 117 ~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp---e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 117 IWQQAREVVRFNGLEDRVHVLPGPVETVELP---EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp THHHHHHHHHHTTCTTTEEEEESCTTTCCCS---SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHHHHHHcCCCceEEEEeeeeeeecCC---ccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 788887753 3345799999999996543 6899999955433322 122778999999999999998764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=148.43 Aligned_cols=140 Identities=17% Similarity=0.191 Sum_probs=108.1
Q ss_pred HHHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHH
Q 043471 13 QKNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKK 91 (485)
Q Consensus 13 ~~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~ 91 (485)
...||+.+.....+..++.|... .....+.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.
T Consensus 12 ~~~y~~~y~~~~~~~~ml~d~~r---~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~ 87 (348)
T 2y1w_A 12 AVQYFQFYGYLSQQQNMMQDYVR---TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH 87 (348)
T ss_dssp HHHHHHHHTCHHHHHHHHTCHHH---HHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHH
T ss_pred HHHHHHHHhhhhHHHHHhcchHH---HHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHH
Confidence 45677766555555666554221 223456777777777889999999999999999999865 999999996 8888
Q ss_pred HHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 92 NEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 92 a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|+++.. ..++++++.+|+.+.+ ++ ++||+|++..+++|+..+.....+.++.++|+|||.+++..
T Consensus 88 a~~~~~~~~l~~~v~~~~~d~~~~~--~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 88 AEVLVKSNNLTDRIVVIPGKVEEVS--LP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp HHHHHHHTTCTTTEEEEESCTTTCC--CS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred HHHHHHHcCCCCcEEEEEcchhhCC--CC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 887642 2258999999998844 33 68999999988888876556788889999999999998753
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=133.36 Aligned_cols=113 Identities=20% Similarity=0.213 Sum_probs=98.5
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~ 347 (485)
......+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++...+ .++++..+|+.+.+.++
T Consensus 63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 141 (210)
T 3lbf_A 63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQAR 141 (210)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccC
Confidence 356677888888899999999999999999999988 7899999999999999999886433 37999999998876667
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++||+|++..+++|+++ ++.++|||||++++....
T Consensus 142 ~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 142 APFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 89999999999999875 688999999999998654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.3e-15 Score=144.59 Aligned_cols=147 Identities=10% Similarity=0.023 Sum_probs=113.3
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~ 119 (485)
.+++.++..++.+|||||||+|..+..+++. +.+++++|+ +.+++.|+++... .++++++.+|+.+ ++ +.
T Consensus 160 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~--p~- 234 (332)
T 3i53_A 160 GIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PL--PA- 234 (332)
T ss_dssp TGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC--CC-
T ss_pred HHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CC--CC-
Confidence 4555566566789999999999999999987 458999999 9999999987432 2579999999973 23 33
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc--cc----CCCCCCCCChhHHHHHhhhccee
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS--KR----KHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
+||+|++..++||++++...+++++++++|+|||++++.+......... .+ .......++.+.|..+++++||.
T Consensus 235 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~ 314 (332)
T 3i53_A 235 GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLA 314 (332)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEE
T ss_pred CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCE
Confidence 8999999999999999878899999999999999999988765433000 00 00112234788999999999996
Q ss_pred cCC
Q 043471 194 DAS 196 (485)
Q Consensus 194 ~~~ 196 (485)
...
T Consensus 315 ~~~ 317 (332)
T 3i53_A 315 VRA 317 (332)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-15 Score=138.88 Aligned_cols=145 Identities=15% Similarity=0.147 Sum_probs=98.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHH----H--cCCCCCeEEEEeeccCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEE----V--NGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~----~--~~~~~~~~~~~~d~~~~~~~ 115 (485)
...++.+...++.+|||||||+|.++..|++. +.+|+|+|+|++|++.+.+ + ....++++++++|+.+ ++
T Consensus 17 ~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~--l~ 94 (218)
T 3mq2_A 17 DAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER--LP 94 (218)
T ss_dssp HHHHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT--CC
T ss_pred HHHHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh--CC
Confidence 34555556677889999999999999999998 6799999999998885322 1 1223589999999998 55
Q ss_pred CCCCCeeEEE---hhhhhh--ccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCC----hhHHHHH
Q 043471 116 FSEDSVDMMF---SNWLLM--YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYRE----PRFYSKV 186 (485)
Q Consensus 116 ~~~~~~D~v~---~~~~~~--~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 186 (485)
+++++ |.|+ +...++ |+++ ...+++++.++|||||.++++............... ..... .+.+...
T Consensus 95 ~~~~~-d~v~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 170 (218)
T 3mq2_A 95 PLSGV-GELHVLMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGE-HPEPTPDSADEWLAPR 170 (218)
T ss_dssp SCCCE-EEEEEESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTT-CCCCCHHHHHHHHHHH
T ss_pred CCCCC-CEEEEEccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEecccccccccccccc-CCccchHHHHHHHHHH
Confidence 56555 6555 333333 6666 358999999999999999996432211111111111 11112 2346678
Q ss_pred hhhcceec
Q 043471 187 FKECQIQD 194 (485)
Q Consensus 187 ~~~~~~~~ 194 (485)
+.++||..
T Consensus 171 l~~aGf~i 178 (218)
T 3mq2_A 171 YAEAGWKL 178 (218)
T ss_dssp HHHTTEEE
T ss_pred HHHcCCCc
Confidence 88889843
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-16 Score=149.43 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=96.4
Q ss_pred HHHhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHH
Q 043471 14 KNYWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKN 92 (485)
Q Consensus 14 ~~yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a 92 (485)
..||+.+.....+.+++.+.... ...++.+.+.....++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|
T Consensus 29 ~~yf~~y~~~~~~~~~l~d~~r~---~~~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a 104 (349)
T 3q7e_A 29 DYYFDSYAHFGIHEELLKDEVRT---LTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYA 104 (349)
T ss_dssp --------CCHHHHHHHHCHHHH---HHHHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHH
T ss_pred HHHHHhhhhhHHHHHHhccHHHH---HHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHH
Confidence 45666655544455554442211 22334444444456788999999999999999999976 999999995 99999
Q ss_pred HHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEE
Q 043471 93 EEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 93 ~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++.. ..++++++++|+.+ +++++++||+|++..+.+++. ......+++++.++|||||+++..
T Consensus 105 ~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 105 VKIVKANKLDHVVTIIKGKVEE--VELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp HHHHHHTTCTTTEEEEESCTTT--CCCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHHHcCCCCcEEEEECcHHH--ccCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 88653 22359999999998 456788999999976544441 122678999999999999998753
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=134.28 Aligned_cols=112 Identities=19% Similarity=0.270 Sum_probs=91.8
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCC-CCCCCccE
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKT-YPENSFDV 352 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~-~~~~~fD~ 352 (485)
...++++.+|||+|||+|.++..+++.+ +.+++|+|+|+.+++.|++++... ..+++++++|+.+++ +.+++||+
T Consensus 17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence 3356788999999999999999999885 369999999999999999997643 347999999988775 55689999
Q ss_pred EEEcccccc---------cCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 353 IYSRDTILH---------IQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 353 i~~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|++...+.. ..+...+++++.++|||||++++..+..
T Consensus 97 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 97 VMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred EEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 999875511 1134679999999999999999987654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.2e-15 Score=131.02 Aligned_cols=134 Identities=19% Similarity=0.230 Sum_probs=108.5
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYP 346 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 346 (485)
......+++.+...++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.+++++...+ .++++..+|+.+ +++
T Consensus 19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~ 96 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-ALC 96 (192)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HHT
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hcc
Confidence 3455667777888899999999999999999999885 899999999999999999875333 478999998866 233
Q ss_pred C-CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 347 E-NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 347 ~-~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
. ++||+|++..+++ +...+++++.++|+|||.+++..... .+...+.+.+++.||.
T Consensus 97 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~--------------------~~~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL--------------------ETKFEAMECLRDLGFD 153 (192)
T ss_dssp TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH--------------------HHHHHHHHHHHHTTCC
T ss_pred cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCc--------------------chHHHHHHHHHHCCCc
Confidence 3 5899999987765 46899999999999999999985421 1245678899999995
Q ss_pred EE
Q 043471 426 DI 427 (485)
Q Consensus 426 ~~ 427 (485)
+.
T Consensus 154 ~~ 155 (192)
T 1l3i_A 154 VN 155 (192)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-15 Score=137.55 Aligned_cols=137 Identities=18% Similarity=0.198 Sum_probs=113.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~ 345 (485)
..+..++..+.+.++.+|||+|||+|.++..+++.+ +.+++++|+++.+++.|++++... ..++++..+|+.+.++
T Consensus 83 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 83 KDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred hHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence 345677888888999999999999999999999884 579999999999999999987532 3579999999998877
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
++++||+|++ +.+++..+++++.++|+|||++++...... ....+.+.++++||.
T Consensus 163 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------~~~~~~~~l~~~gf~ 217 (258)
T 2pwy_A 163 EEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT--------------------QVLELVRAAEAHPFR 217 (258)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH--------------------HHHHHHHHHTTTTEE
T ss_pred CCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH--------------------HHHHHHHHHHHCCCc
Confidence 7789999998 457888999999999999999999864210 134667788889999
Q ss_pred EEEEee
Q 043471 426 DIIAED 431 (485)
Q Consensus 426 ~~~~~~ 431 (485)
.++..+
T Consensus 218 ~~~~~~ 223 (258)
T 2pwy_A 218 LERVLE 223 (258)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 876654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.7e-15 Score=133.76 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=100.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRD 357 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~ 357 (485)
.++.+|||||||+|.++..+++.. +.+++|+|+|+.+++.|++++...+ .++.++++|+.+++ +++++||.|++..
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 356799999999999999999876 6799999999999999999876433 47999999998865 6678999998865
Q ss_pred cccccCC--------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 358 TILHIQD--------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 358 ~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
...+... ...+++++.++|||||.+++..... . ....+.+.++++||.....
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~----------~----------~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR----------G----------LFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH----------H----------HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH----------H----------HHHHHHHHHHHCCCccccc
Confidence 4433221 3689999999999999999984211 0 0234567778889987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=137.37 Aligned_cols=114 Identities=25% Similarity=0.356 Sum_probs=94.2
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~ 119 (485)
...+.+++.++. +.+|||||||+|.++..+++. .+|+|+|+|+.+++.|+++.... .+++++++|+.+. +++ +
T Consensus 22 ~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~-~ 95 (243)
T 3d2l_A 22 EWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMREL--ELP-E 95 (243)
T ss_dssp HHHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGC--CCS-S
T ss_pred HHHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhc--CCC-C
Confidence 344556666543 589999999999999999988 89999999999999999875322 4799999999884 444 7
Q ss_pred CeeEEEhhh-hhhccC-hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNW-LLMYLS-DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~-~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|++.. +++|+. ......+++++.++|+|||.+++..+
T Consensus 96 ~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 138 (243)
T 3d2l_A 96 PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH 138 (243)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 899999986 899984 44578999999999999999998654
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=145.20 Aligned_cols=150 Identities=14% Similarity=0.252 Sum_probs=116.9
Q ss_pred HHhccCCCCC-CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 45 EVLSLLPPYE-GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 45 ~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
.+++.++..+ +.+|||||||+|.++..++++ +.+++++|+ +.+++.++++... .++++++.+|+.+.+ ++..
T Consensus 169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~ 246 (352)
T 3mcz_A 169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDAR-NFEG 246 (352)
T ss_dssp HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGG-GGTT
T ss_pred HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCc-ccCC
Confidence 5666776666 889999999999999999987 568999999 8899998886432 236999999998732 1134
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc--c---------CCCCCCCCChhHHHHHh
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK--R---------KHNPTHYREPRFYSKVF 187 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~--~---------~~~~~~~~~~~~~~~~~ 187 (485)
+.||+|++..++||++++....++++++++|+|||.+++.+.......... . .......++.+.|..++
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 326 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV 326 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence 679999999999999987788999999999999999999887654432111 0 01122345788999999
Q ss_pred hhcceecCC
Q 043471 188 KECQIQDAS 196 (485)
Q Consensus 188 ~~~~~~~~~ 196 (485)
+++||....
T Consensus 327 ~~aGf~~~~ 335 (352)
T 3mcz_A 327 RDAGLAVGE 335 (352)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCceee
Confidence 999997654
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-15 Score=132.35 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=98.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCC--eEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FEN--VKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~--~~~~~~d~~~~~~~~ 116 (485)
...+.+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++... .++ ++++.+|+.+. +
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---~ 115 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN---V 115 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT---C
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc---c
Confidence 4667788888888889999999999999999999988999999999999999987532 234 99999998763 2
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++++||+|+++..+++. ......+++++.++|+|||.+++..+.
T Consensus 116 ~~~~~D~v~~~~~~~~~-~~~~~~~l~~~~~~L~~gG~l~~~~~~ 159 (194)
T 1dus_A 116 KDRKYNKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEECCCcccc-hhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 46789999998776653 333779999999999999999998664
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=143.48 Aligned_cols=149 Identities=11% Similarity=0.160 Sum_probs=116.8
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~ 117 (485)
...+++.++..++.+|||||||+|.++..++++ +.+++++|+ +.+++.|+++... .++++++.+|+.+ ++ +
T Consensus 191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~--p 266 (369)
T 3gwz_A 191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TI--P 266 (369)
T ss_dssp HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CC--C
T ss_pred HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CC--C
Confidence 345667777777889999999999999999988 558999999 9999999987532 3589999999973 23 3
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc--------CCCCCCCCChhHHHHHhhh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR--------KHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 189 (485)
. .||+|++..++|+++++...+++++++++|+|||++++.+........... .......++.+.|..++++
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~ 345 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEK 345 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHT
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHH
Confidence 3 899999999999999977779999999999999999998876544321110 0011223478899999999
Q ss_pred cceecCC
Q 043471 190 CQIQDAS 196 (485)
Q Consensus 190 ~~~~~~~ 196 (485)
+||....
T Consensus 346 aGf~~~~ 352 (369)
T 3gwz_A 346 SGLRVER 352 (369)
T ss_dssp TTEEEEE
T ss_pred CCCeEEE
Confidence 9996543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-16 Score=148.36 Aligned_cols=118 Identities=15% Similarity=0.241 Sum_probs=95.0
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCc-EEEEeCChHHHHHHHHHc----------CC-CCCeEEEEe
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGH-VIALDFIDSVIKKNEEVN----------GH-FENVKFMCA 107 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~-v~giD~s~~~~~~a~~~~----------~~-~~~~~~~~~ 107 (485)
+....+++.+...++.+|||||||+|.+++.++.. +.. |+|||+|+.+++.|++.. +. .++++|+++
T Consensus 160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 44567888888899999999999999999999876 664 999999999999887632 21 258999999
Q ss_pred eccCCCCCCCC--CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 108 DVTSPDLTFSE--DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 108 d~~~~~~~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
|+.+ +++++ ..||+|+++..+ |.++ ....|.+++++|||||.|++.+....
T Consensus 240 D~~~--lp~~d~~~~aDVVf~Nn~~-F~pd--l~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 240 DFLS--EEWRERIANTSVIFVNNFA-FGPE--VDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp CTTS--HHHHHHHHTCSEEEECCTT-CCHH--HHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred cccC--CccccccCCccEEEEcccc-cCch--HHHHHHHHHHcCCCCcEEEEeecccC
Confidence 9988 44433 479999998654 4444 67889999999999999999766543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.3e-15 Score=138.70 Aligned_cols=104 Identities=14% Similarity=0.170 Sum_probs=86.1
Q ss_pred ccCCCCCCCcEEEEcCCCCcch-HHHHhh-cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFT-GELAKK-AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~-~~l~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
..+...++.+|||||||+|.++ ..+++. +++|+|+|+|++|++.|+++... ..+++++++|+.+ ++ +++||+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~--l~--d~~FDv 191 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV--ID--GLEFDV 191 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG--GG--GCCCSE
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh--CC--CCCcCE
Confidence 4567788999999999999876 555653 88999999999999999987532 2689999999987 43 689999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|++... .++ ..++++++.++|||||.+++...
T Consensus 192 V~~~a~---~~d--~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 192 LMVAAL---AEP--KRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp EEECTT---CSC--HHHHHHHHHHHCCTTCEEEEEEC
T ss_pred EEECCC---ccC--HHHHHHHHHHHcCCCcEEEEEcC
Confidence 997654 455 66999999999999999999753
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-15 Score=146.80 Aligned_cols=151 Identities=14% Similarity=0.126 Sum_probs=114.6
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~ 115 (485)
...+.+++.+...++.+|||||||+|.++..+++. +.+++++|+ +.+++.|+++... .++++++.+|+.+ ++
T Consensus 169 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~- 245 (374)
T 1qzz_A 169 LAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PL- 245 (374)
T ss_dssp TTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-
T ss_pred hHHHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cC-
Confidence 44566777777777899999999999999999988 468999999 9999999987532 2379999999875 23
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec--cCCCCCc-ccc--------CCCCCCCCChhHHH
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES--CFHQSGD-SKR--------KHNPTHYREPRFYS 184 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~--~~~~~~~-~~~--------~~~~~~~~~~~~~~ 184 (485)
+. .||+|++..++||++++....+++++.++|+|||++++.+. ....... ... ........+.+.|.
T Consensus 246 -~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (374)
T 1qzz_A 246 -PV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVV 323 (374)
T ss_dssp -SC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHH
T ss_pred -CC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHH
Confidence 33 49999999999999987677999999999999999999887 4322110 000 00012334788999
Q ss_pred HHhhhcceecCC
Q 043471 185 KVFKECQIQDAS 196 (485)
Q Consensus 185 ~~~~~~~~~~~~ 196 (485)
.+++++||....
T Consensus 324 ~ll~~aGf~~~~ 335 (374)
T 1qzz_A 324 DLAGSAGLALAS 335 (374)
T ss_dssp HHHHTTTEEEEE
T ss_pred HHHHHCCCceEE
Confidence 999999996533
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=132.91 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCCC---CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC
Q 043471 270 ETTKEFVAKLDLK---PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~ 344 (485)
.....+++.+... ++.+|||+|||+|.++..++... +.+++|+|+|+.+++.|++++...+ .++++..+|+.+.+
T Consensus 49 ~~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 128 (207)
T 1jsx_A 49 MLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP 128 (207)
T ss_dssp HHHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC
T ss_pred HHHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC
Confidence 3445555554322 47899999999999999999875 5799999999999999999876443 24999999998876
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.++||+|++.. +.+...+++++.++|+|||++++..
T Consensus 129 -~~~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 129 -SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -ccCCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 457899999854 3578899999999999999999873
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=134.99 Aligned_cols=142 Identities=15% Similarity=0.149 Sum_probs=101.3
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC---CCCCCCCcc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK---KTYPENSFD 351 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~---~~~~~~~fD 351 (485)
+.+.+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.++.... .++++..+|+.+ +++.+++||
T Consensus 71 ~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 71 DQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp SCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCCEE
T ss_pred heecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-CCeEEEEcccCChhhhcccCCcEE
Confidence 34567889999999999999999999885 369999999999887777665433 479999999987 344567899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+|++... .......+++++.++|||||++++............ ....+ ..+ .++|+++||+++....
T Consensus 150 ~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~~~---------~~~-~~~l~~~Gf~~~~~~~ 216 (233)
T 2ipx_A 150 VIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTAS-AEAVF---------ASE-VKKMQQENMKPQEQLT 216 (233)
T ss_dssp EEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSC-HHHHH---------HHH-HHTTGGGTEEEEEEEE
T ss_pred EEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCC-HHHHH---------HHH-HHHHHHCCCceEEEEe
Confidence 9999554 222234568899999999999999643211000000 01110 122 5888999999987554
Q ss_pred c
Q 043471 432 R 432 (485)
Q Consensus 432 ~ 432 (485)
.
T Consensus 217 ~ 217 (233)
T 2ipx_A 217 L 217 (233)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.5e-15 Score=137.99 Aligned_cols=103 Identities=21% Similarity=0.284 Sum_probs=86.0
Q ss_pred CCCcEEEEcCCCCc----chHHHHhh------cCcEEEEeCChHHHHHHHHHcC--------------------C---C-
Q 043471 54 EGKTVLEFGAGIGR----FTGELAKK------AGHVIALDFIDSVIKKNEEVNG--------------------H---F- 99 (485)
Q Consensus 54 ~~~~vLDiGcG~G~----~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~--------------------~---~- 99 (485)
++.+|+|+|||||. ++..|++. +.+|+|+|+|++|++.|++... . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 56667665 2589999999999999998631 0 0
Q ss_pred ---------CCeEEEEeeccCCCCCCC-CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 100 ---------ENVKFMCADVTSPDLTFS-EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 100 ---------~~~~~~~~d~~~~~~~~~-~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.++.|.++|+.+. +++ .++||+|+|.++++|++++...++++++++.|+|||++++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~--~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCC--CCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 2689999999873 333 57899999999999999877889999999999999999994
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=129.13 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=105.3
Q ss_pred HHHHHH---HHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC
Q 043471 270 ETTKEF---VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~---~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~ 344 (485)
.....+ ++.+.+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++... .++++..+|+.+..
T Consensus 57 ~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-~~v~~~~~d~~~~~ 135 (227)
T 1g8a_A 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-RNIVPILGDATKPE 135 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-TTEEEEECCTTCGG
T ss_pred hHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-CCCEEEEccCCCcc
Confidence 444555 334457788999999999999999999875 369999999999999999988655 58999999998731
Q ss_pred ---CCCCCccEEEEcccccccCCHH-HHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 345 ---YPENSFDVIYSRDTILHIQDKP-ALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 345 ---~~~~~fD~i~~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
...++||+|++... .++.. .+++++.++|||||++++. +.............+ ...++.++ +
T Consensus 136 ~~~~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~~~---------~~~~l~~l-~ 201 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTKEPEQV---------FREVEREL-S 201 (227)
T ss_dssp GGTTTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTSCHHHH---------HHHHHHHH-H
T ss_pred hhhcccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCCChhhh---------hHHHHHHH-H
Confidence 12368999998654 23444 4499999999999999998 322111111111111 24566666 7
Q ss_pred hCCCeEEEEeec
Q 043471 421 DAGFVDIIAEDR 432 (485)
Q Consensus 421 ~aGf~~~~~~~~ 432 (485)
++ |+++.....
T Consensus 202 ~~-f~~~~~~~~ 212 (227)
T 1g8a_A 202 EY-FEVIERLNL 212 (227)
T ss_dssp TT-SEEEEEEEC
T ss_pred hh-ceeeeEecc
Confidence 77 999877654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-15 Score=133.35 Aligned_cols=105 Identities=21% Similarity=0.251 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--CCCCCCCeeEEE
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--LTFSEDSVDMMF 125 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~D~v~ 125 (485)
+...++.+|||+|||+|..+..+++.. .+|+|+|+|+.|++.+.+......++.++++|+.... .++ .++||+|+
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~V~ 131 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDLIY 131 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeEEE
Confidence 456678899999999999999999874 6899999999877654443322258999999987631 123 37999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
++. ..+ . ....++++++++|||||.+++..
T Consensus 132 ~~~-~~~-~--~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 132 QDI-AQK-N--QIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ECC-CST-T--HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec-cCh-h--HHHHHHHHHHHHhCCCCEEEEEE
Confidence 973 221 2 24456999999999999999973
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-14 Score=128.45 Aligned_cols=148 Identities=18% Similarity=0.157 Sum_probs=100.9
Q ss_pred HHHHHHHHHc---CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC
Q 043471 270 ETTKEFVAKL---DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~ 344 (485)
.....++..+ .++++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++...+..... .++.++.+|+....
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r-~nv~~i~~Da~~~~ 138 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR-PNIFPLLADARFPQ 138 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC-TTEEEEECCTTCGG
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCeEEEEcccccch
Confidence 4455565555 48899999999999999999999875 359999999999875544333222 38999999987632
Q ss_pred ---CCCCCccEEEEcccccccCCHHHHH-HHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHH
Q 043471 345 ---YPENSFDVIYSRDTILHIQDKPALF-KSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 345 ---~~~~~fD~i~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 420 (485)
...++||+|++..+. ++....+ ..+.++|||||+++++......... .. +........+.|+
T Consensus 139 ~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t-------~~----~~e~~~~~~~~L~ 204 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVT-------KD----PKEIYKTEVEKLE 204 (232)
T ss_dssp GTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------CC----SSSSTTHHHHHHH
T ss_pred hhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccC-------CC----HHHHHHHHHHHHH
Confidence 124689999997543 5666555 5566699999999998432210000 00 0011245667888
Q ss_pred hCCCeEEEEeec
Q 043471 421 DAGFVDIIAEDR 432 (485)
Q Consensus 421 ~aGf~~~~~~~~ 432 (485)
++||++++....
T Consensus 205 ~~gf~~~~~~~l 216 (232)
T 3id6_C 205 NSNFETIQIINL 216 (232)
T ss_dssp HTTEEEEEEEEC
T ss_pred HCCCEEEEEecc
Confidence 999999887654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-16 Score=140.09 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 347 (485)
..+..+++.+.. .++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...+.++++.++|+.+ ++++
T Consensus 16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~ 94 (215)
T 4dzr_A 16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE-WLIE 94 (215)
T ss_dssp HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH-HHHH
T ss_pred HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh-hhhh
Confidence 345566666654 678899999999999999999986 5699999999999999999876544478888888877 5554
Q ss_pred -----CCccEEEEcccccccCCH--------------------------HHHHHHHHhcCCCCcEEEEEecccCCCCCCh
Q 043471 348 -----NSFDVIYSRDTILHIQDK--------------------------PALFKSFFKWLKPGGTVLISDYCKSFGTPSV 396 (485)
Q Consensus 348 -----~~fD~i~~~~~~~~~~~~--------------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 396 (485)
++||+|+++..+++..+. ..+++++.++|||||++++....
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------- 166 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG-------- 166 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT--------
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC--------
Confidence 899999997665433221 77889999999999994444321
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHH--hCCCeEEEEe
Q 043471 397 EFSEYIKQRGYDLHDVKSYGQMLK--DAGFVDIIAE 430 (485)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~l~--~aGf~~~~~~ 430 (485)
....+.+.++++ ++||..+.+.
T Consensus 167 ------------~~~~~~~~~~l~~~~~gf~~~~~~ 190 (215)
T 4dzr_A 167 ------------HNQADEVARLFAPWRERGFRVRKV 190 (215)
T ss_dssp ------------TSCHHHHHHHTGGGGGGTEECCEE
T ss_pred ------------CccHHHHHHHHHHhhcCCceEEEE
Confidence 123567788888 8899776543
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=132.41 Aligned_cols=113 Identities=23% Similarity=0.295 Sum_probs=97.5
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
......+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ ++++..+|+.+...+++
T Consensus 56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~~~~ 133 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN-NIKLILGDGTLGYEEEK 133 (231)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS-SEEEEESCGGGCCGGGC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC-CeEEEECCcccccccCC
Confidence 356677888888889999999999999999999988 4799999999999999999987665 89999999987333467
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+||+|++..+++|+. .++.++|||||++++.....
T Consensus 134 ~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 134 PYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 899999999999986 47899999999999986543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=144.61 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=114.7
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~ 116 (485)
....+++.++..+ .+|||||||+|..+..++++ +.+++++|+ +.+++.|+++... .++++++.+|+.+ ++
T Consensus 156 ~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-- 230 (334)
T 2ip2_A 156 AFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EV-- 230 (334)
T ss_dssp HHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CC--
T ss_pred HHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CC--
Confidence 3456666666555 89999999999999999987 568999999 9999999887432 2579999999876 33
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc-cC--------CCCCCCCChhHHHHHh
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK-RK--------HNPTHYREPRFYSKVF 187 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~ 187 (485)
+ ++||+|++..++||++++...+++++++++|+|||++++.+.......... .. ......++.+.|.+++
T Consensus 231 ~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 309 (334)
T 2ip2_A 231 P-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLL 309 (334)
T ss_dssp C-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHH
T ss_pred C-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHH
Confidence 3 679999999999999987778999999999999999999987654321110 00 0012234788999999
Q ss_pred hhcceecC
Q 043471 188 KECQIQDA 195 (485)
Q Consensus 188 ~~~~~~~~ 195 (485)
+++||...
T Consensus 310 ~~aGf~~~ 317 (334)
T 2ip2_A 310 GRGGFAVE 317 (334)
T ss_dssp HHTTEEEE
T ss_pred HHCCCcee
Confidence 99999653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=135.34 Aligned_cols=136 Identities=20% Similarity=0.336 Sum_probs=112.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~ 345 (485)
.....++..+.+.++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.|++++. +...++++..+|+.+. +
T Consensus 80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~ 158 (255)
T 3mb5_A 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG-I 158 (255)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC-C
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc-c
Confidence 345577788888999999999999999999999884 5799999999999999999875 4444599999999864 6
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCC--
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAG-- 423 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-- 423 (485)
++++||+|++ +.+++..+++++.++|+|||++++..... .....+.+.++++|
T Consensus 159 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~--------------------~~~~~~~~~l~~~g~~ 213 (255)
T 3mb5_A 159 EEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS--------------------NQVMRLHEKLREFKDY 213 (255)
T ss_dssp CCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH--------------------HHHHHHHHHHHHTGGG
T ss_pred CCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH--------------------HHHHHHHHHHHHcCCC
Confidence 6788999998 45788899999999999999999875321 12456788899999
Q ss_pred CeEEEEee
Q 043471 424 FVDIIAED 431 (485)
Q Consensus 424 f~~~~~~~ 431 (485)
|..+.+..
T Consensus 214 f~~~~~~e 221 (255)
T 3mb5_A 214 FMKPRTIN 221 (255)
T ss_dssp BSCCEEEC
T ss_pred ccccEEEE
Confidence 98776643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-15 Score=134.71 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=104.8
Q ss_pred CCEEEEECCCC--ChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC----CC--CCCcc-
Q 043471 284 GQKVLDVGCGI--GGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT----YP--ENSFD- 351 (485)
Q Consensus 284 ~~~vLDiGcG~--G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~----~~--~~~fD- 351 (485)
..+|||||||+ +..+..++++. +++|+++|.|+.|++.|++++.+.. .+++++++|+.+.+ .+ .+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~ 158 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL 158 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence 35899999997 44555555542 6799999999999999999987543 36999999998752 01 24455
Q ss_pred ----EEEEcccccccCC---HHHHHHHHHhcCCCCcEEEEEecccCCCCC-ChhHHHHHHhcC--CCCCCHHHHHHHHHh
Q 043471 352 ----VIYSRDTILHIQD---KPALFKSFFKWLKPGGTVLISDYCKSFGTP-SVEFSEYIKQRG--YDLHDVKSYGQMLKD 421 (485)
Q Consensus 352 ----~i~~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 421 (485)
.|+++.+|||+++ +..+++++.+.|+|||+|++++........ ...........+ +.+.+.+++..+|.
T Consensus 159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~f~- 237 (277)
T 3giw_A 159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEFFE- 237 (277)
T ss_dssp TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHTTT-
T ss_pred CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHHhC-
Confidence 5889999999987 568999999999999999999876542111 112222222222 45679999999994
Q ss_pred CCCeEEE
Q 043471 422 AGFVDII 428 (485)
Q Consensus 422 aGf~~~~ 428 (485)
||+.++
T Consensus 238 -Glelve 243 (277)
T 3giw_A 238 -GLELVE 243 (277)
T ss_dssp -TSEECT
T ss_pred -CCcccC
Confidence 998653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-15 Score=138.12 Aligned_cols=97 Identities=28% Similarity=0.395 Sum_probs=85.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|+++.. ++.+..+|+.++++++++||+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~d~~~~~~~~~~fD~v~~~~~~- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPFSDTSMDAIIRIYAP- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSBCTTCEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC----CcEEEEcchhhCCCCCCceeEEEEeCCh-
Confidence 577899999999999999999886 6799999999999999998753 6889999999988888999999997653
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.+++++.++|||||++++.++..
T Consensus 159 ------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 34799999999999999987654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-15 Score=131.33 Aligned_cols=134 Identities=18% Similarity=0.128 Sum_probs=95.6
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC----CCCCCCccEE
Q 043471 279 LDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----TYPENSFDVI 353 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----~~~~~~fD~i 353 (485)
+.++++.+|||+|||+|..+..+++.. +.+|+|+|+|+.|++.+.++.... .++.++.+|+... +++ ++||+|
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-~~v~~~~~d~~~~~~~~~~~-~~fD~V 130 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIV-EKVDLI 130 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTC-CCEEEE
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-CCeEEEEcCCCCchhhcccc-cceeEE
Confidence 456788999999999999999999876 369999999999876665554332 3788888888763 444 789999
Q ss_pred EEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHH----HHHHhCCCeEEEE
Q 043471 354 YSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG----QMLKDAGFVDIIA 429 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~aGf~~~~~ 429 (485)
++.. . +..+...++++++++|||||++++...... ... ..+.+++. +.++++ |++++.
T Consensus 131 ~~~~-~-~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~-~~~~~~~~~~~~~~l~~~-f~~~~~ 192 (210)
T 1nt2_A 131 YQDI-A-QKNQIEILKANAEFFLKEKGEVVIMVKARS--------------IDS-TAEPEEVFKSVLKEMEGD-FKIVKH 192 (210)
T ss_dssp EECC-C-STTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HCT-TSCHHHHHHHHHHHHHTT-SEEEEE
T ss_pred EEec-c-ChhHHHHHHHHHHHHhCCCCEEEEEEecCC--------------ccc-cCCHHHHHHHHHHHHHhh-cEEeee
Confidence 9972 2 212344568999999999999999832210 001 11233332 337888 999887
Q ss_pred eec
Q 043471 430 EDR 432 (485)
Q Consensus 430 ~~~ 432 (485)
...
T Consensus 193 ~~~ 195 (210)
T 1nt2_A 193 GSL 195 (210)
T ss_dssp EEC
T ss_pred ecC
Confidence 655
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=133.16 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=104.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++. +...+++++++|+.+.+. +++||+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc
Confidence 45788999999999999999998843379999999999999999876 444569999999998875 688999999543
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
.+...+++++.++|||||++++.+....... .....+.+.+.++++||++..
T Consensus 202 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--------------~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--------------PREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred ----hhHHHHHHHHHHHCCCCeEEEEEEeeccccc--------------cccHHHHHHHHHHHcCCeeEE
Confidence 3557889999999999999999876532111 122457788999999998866
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=142.69 Aligned_cols=143 Identities=17% Similarity=0.249 Sum_probs=111.3
Q ss_pred HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+++.++ ..++.+|||||||+|..+..++++ +.+++++|+ +.+++.|++. ++++++.+|+.+ ++ +.+
T Consensus 192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~--p~~- 262 (368)
T 3reo_A 192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFD-GV--PKG- 262 (368)
T ss_dssp HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-CC--CCC-
T ss_pred HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCC-CC--CCC-
Confidence 45666665 556789999999999999999987 458999999 8888776643 689999999976 33 443
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc--------------CCCCCCCCChhHHHHH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR--------------KHNPTHYREPRFYSKV 186 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 186 (485)
|+|++..++||++++...+++++++++|+|||.+++.+........... .......++.+.|.++
T Consensus 263 -D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~l 341 (368)
T 3reo_A 263 -DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQAL 341 (368)
T ss_dssp -SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHH
T ss_pred -CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHH
Confidence 9999999999999887889999999999999999998876543321100 0112233478889999
Q ss_pred hhhcceecCC
Q 043471 187 FKECQIQDAS 196 (485)
Q Consensus 187 ~~~~~~~~~~ 196 (485)
++++||....
T Consensus 342 l~~AGF~~v~ 351 (368)
T 3reo_A 342 AMASGFRGFK 351 (368)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCeeeE
Confidence 9999996543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-15 Score=133.93 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=101.8
Q ss_pred hHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCC
Q 043471 43 RPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 43 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~ 117 (485)
...+++.+. ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++... ..+++++++|+.+. .
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~----~ 122 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD----V 122 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT----C
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc----C
Confidence 334444443 45678999999999999999998865 999999999999999987542 23599999998762 3
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+++||+|+++..++++ ..+++++.++|+|||++++.+.... ..+.+...++++||...
T Consensus 123 ~~~fD~i~~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 123 DGKFDLIVANILAEIL-----LDLIPQLDSHLNEDGQVIFSGIDYL---------------QLPKIEQALAENSFQID 180 (205)
T ss_dssp CSCEEEEEEESCHHHH-----HHHGGGSGGGEEEEEEEEEEEEEGG---------------GHHHHHHHHHHTTEEEE
T ss_pred CCCceEEEECCcHHHH-----HHHHHHHHHhcCCCCEEEEEecCcc---------------cHHHHHHHHHHcCCceE
Confidence 5899999998776653 5789999999999999999755432 45678888999998543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.6e-15 Score=134.11 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=86.0
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-C--CCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-T--YPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~--~~~~~fD~i~~~~ 357 (485)
++.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|++++...+ .++.++++|+.++ + +++++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999876 5799999999999999999876433 3799999998774 3 6789999999985
Q ss_pred cccccCCH--------HHHHHHHHhcCCCCcEEEEEe
Q 043471 358 TILHIQDK--------PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 358 ~~~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...+.... ..+++++.++|||||.+++.+
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 54433221 269999999999999999985
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-15 Score=133.56 Aligned_cols=106 Identities=16% Similarity=0.157 Sum_probs=87.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC---CCeEEEEccCCCCC--CCCCC-ccEEEEc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK---CSVEFEVADCTKKT--YPENS-FDVIYSR 356 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---~~i~~~~~d~~~~~--~~~~~-fD~i~~~ 356 (485)
++.+|||+|||+|.++..++.+...+|+|+|+|+.|++.|++++...+ .+++++++|+.+.. +++++ ||+|++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 577999999999999998777644599999999999999999886444 47999999987643 23578 9999998
Q ss_pred ccccccCCHHHHHHHH--HhcCCCCcEEEEEeccc
Q 043471 357 DTILHIQDKPALFKSF--FKWLKPGGTVLISDYCK 389 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 389 (485)
..++ ..+...+++.+ .++|+|||.+++.....
T Consensus 133 ~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8754 66788899999 77899999999986544
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=131.14 Aligned_cols=109 Identities=21% Similarity=0.388 Sum_probs=88.4
Q ss_pred HHH---hccCCCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--CCC
Q 043471 44 PEV---LSLLPPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--LTF 116 (485)
Q Consensus 44 ~~~---~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~~~ 116 (485)
..+ ++.+...++.+|||+|||+|.++..|++. + .+|+|+|+|+.+++.|+++....+++.++.+|+.... +++
T Consensus 61 ~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 140 (230)
T 1fbn_A 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI 140 (230)
T ss_dssp HHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT
T ss_pred HHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCccccccc
Confidence 455 56666677889999999999999999988 4 6999999999999999988765578999999998621 223
Q ss_pred CCCCeeEEEhhhhhhccChH-HHHHHHHHHHhhcccCcEEEEE
Q 043471 117 SEDSVDMMFSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
. ++||+|+ ++++++ ....+++++.++|+|||++++.
T Consensus 141 ~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 141 V-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp S-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred C-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 3 7899999 344432 2467899999999999999996
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-15 Score=137.95 Aligned_cols=144 Identities=9% Similarity=0.059 Sum_probs=100.2
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC---CCC---CCCccEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK---TYP---ENSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~---~~~---~~~fD~i 353 (485)
++.+|||+|||+|.++..++++. +.+|+|+|+|+.|++.|++++.. +..+++++++|+.+. +++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 57799999999999999998875 67999999999999999998863 344699999997652 344 2689999
Q ss_pred EEcccccccC---------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC------CCCCH
Q 043471 354 YSRDTILHIQ---------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY------DLHDV 412 (485)
Q Consensus 354 ~~~~~~~~~~---------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 412 (485)
+++..+++.. ....++.+++++|||||.+.+.+... ........+.+. .....
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~------~~~~~~l~~~g~~~~~~~~~~~~ 218 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRII------HDSLQLKKRLRWYSCMLGKKCSL 218 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHH------HHHHHHGGGBSCEEEEESSTTSH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHH------HHHHhcccceEEEEECCCChhHH
Confidence 9987665443 12245788999999999987763211 001112222221 22345
Q ss_pred HHHHHHHHhCCCeEEEEeec
Q 043471 413 KSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~~~ 432 (485)
..+.++|+++||+.+.+...
T Consensus 219 ~~~~~~l~~~Gf~~v~~~~~ 238 (254)
T 2h00_A 219 APLKEELRIQGVPKVTYTEF 238 (254)
T ss_dssp HHHHHHHHHTTCSEEEEEEE
T ss_pred HHHHHHHHHcCCCceEEEEE
Confidence 78999999999998876543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=142.17 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=115.8
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~ 115 (485)
...+.+++.++..++.+|||||||+|.++..+++.+ .+++++|+ +.+++.|+++... .++++++.+|+.+ ++
T Consensus 170 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~- 246 (360)
T 1tw3_A 170 VAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PL- 246 (360)
T ss_dssp TTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CC-
T ss_pred HhHHHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CC-
Confidence 344567777777778899999999999999999884 58999999 9999999987532 2379999999875 23
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc-CCCCCc-ccc--------CCCCCCCCChhHHHH
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC-FHQSGD-SKR--------KHNPTHYREPRFYSK 185 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~~~-~~~--------~~~~~~~~~~~~~~~ 185 (485)
+. .||+|++..++||++++...++++++.++|+|||.+++.+.. ...... ... .......++.+.|.+
T Consensus 247 -~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 324 (360)
T 1tw3_A 247 -PR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDG 324 (360)
T ss_dssp -SS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHH
T ss_pred -CC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHH
Confidence 33 499999999999999877789999999999999999998876 322110 000 000123347889999
Q ss_pred HhhhcceecCC
Q 043471 186 VFKECQIQDAS 196 (485)
Q Consensus 186 ~~~~~~~~~~~ 196 (485)
+++++||....
T Consensus 325 ll~~aGf~~~~ 335 (360)
T 1tw3_A 325 LAASAGLVVEE 335 (360)
T ss_dssp HHHHTTEEEEE
T ss_pred HHHHCCCeEEE
Confidence 99999996543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=132.84 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=101.2
Q ss_pred HHHHHHHHcCCC-CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEE-EEccCCCCC---C
Q 043471 271 TTKEFVAKLDLK-PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEF-EVADCTKKT---Y 345 (485)
Q Consensus 271 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~-~~~d~~~~~---~ 345 (485)
.+..+++.+.+. ++.+|||+|||||.++..+++....+|+|+|+|+.|++.+.++.. ++.. ...++..++ +
T Consensus 72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~----rv~~~~~~ni~~l~~~~l 147 (291)
T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD----RVRSMEQYNFRYAEPVDF 147 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT----TEEEECSCCGGGCCGGGC
T ss_pred HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc----ccceecccCceecchhhC
Confidence 566778888765 567999999999999999988733599999999999998644321 2222 223333322 3
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC------CCCCHHHHHHHH
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY------DLHDVKSYGQML 419 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l 419 (485)
+..+||+|++..++++ ...+|.+++|+|||||++++..-....... ... ...|. .....+++.+++
T Consensus 148 ~~~~fD~v~~d~sf~s---l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~-~~~----~~~G~vrd~~~~~~~~~~v~~~~ 219 (291)
T 3hp7_A 148 TEGLPSFASIDVSFIS---LNLILPALAKILVDGGQVVALVKPQFEAGR-EQI----GKNGIVRESSIHEKVLETVTAFA 219 (291)
T ss_dssp TTCCCSEEEECCSSSC---GGGTHHHHHHHSCTTCEEEEEECGGGTSCG-GGC----C-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeeHhh---HHHHHHHHHHHcCcCCEEEEEECcccccCh-hhc----CCCCccCCHHHHHHHHHHHHHHH
Confidence 4456999999887764 488999999999999999987211111000 000 00010 112467899999
Q ss_pred HhCCCeEEEEee
Q 043471 420 KDAGFVDIIAED 431 (485)
Q Consensus 420 ~~aGf~~~~~~~ 431 (485)
+++||.+..+..
T Consensus 220 ~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 220 VDYGFSVKGLDF 231 (291)
T ss_dssp HHTTEEEEEEEE
T ss_pred HHCCCEEEEEEE
Confidence 999999877654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.5e-15 Score=143.32 Aligned_cols=145 Identities=12% Similarity=0.129 Sum_probs=108.8
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~ 117 (485)
...+++.++..++.+|||||||+|..+..++++. .+++++|++ .++. +++.. ..++++++.+|+.+ ++ +
T Consensus 173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~--p 246 (348)
T 3lst_A 173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-EV--P 246 (348)
T ss_dssp HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-CC--C
T ss_pred HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-CC--C
Confidence 3456777777778899999999999999999874 478999994 4444 22221 22479999999962 23 3
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc---------CCCCCCCCChhHHHHHhh
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------KHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 188 (485)
+||+|++..++||++++...+++++++++|||||++++.+........... .......++.+.|.++++
T Consensus 247 --~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~ 324 (348)
T 3lst_A 247 --HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFT 324 (348)
T ss_dssp --CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHH
T ss_pred --CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHH
Confidence 899999999999999977789999999999999999998876543311100 011222347889999999
Q ss_pred hcceecC
Q 043471 189 ECQIQDA 195 (485)
Q Consensus 189 ~~~~~~~ 195 (485)
++||...
T Consensus 325 ~aGf~~~ 331 (348)
T 3lst_A 325 AAGLRLD 331 (348)
T ss_dssp HTTEEEE
T ss_pred HCCCceE
Confidence 9999653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-15 Score=130.79 Aligned_cols=104 Identities=15% Similarity=0.265 Sum_probs=85.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.+..+|||+|||+|.++..++... +++|+++|+|+.|++.+++++...+...++...|.... .+.++||+|++..++|
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc-CCCCCcChhhHhhHHH
Confidence 556799999999999999997764 57999999999999999999875443323333666544 3468899999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++++.+..+.++.+.|+|||.++-..
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99877888889999999999876554
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=132.83 Aligned_cols=136 Identities=15% Similarity=0.029 Sum_probs=99.4
Q ss_pred hHHHhccCCCCCCCcEEEEcCC-CCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAG-IGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~ 119 (485)
.+.++......++.+|||+||| +|.++..+++. +.+|+|+|+|+.+++.|+++....+ +++++++|+... .+++++
T Consensus 44 ~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~~ 122 (230)
T 3evz_A 44 SRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII-KGVVEG 122 (230)
T ss_dssp HHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS-TTTCCS
T ss_pred hhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhh-hhcccC
Confidence 3444233334578899999999 99999999998 8899999999999999998754322 799999997543 234568
Q ss_pred CeeEEEhhhhhhccChH-----------------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhH
Q 043471 120 SVDMMFSNWLLMYLSDK-----------------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRF 182 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~-----------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
+||+|+++-.+++.++. ....+++++.++|+|||++++..+... ...+.
T Consensus 123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~~~~~ 188 (230)
T 3evz_A 123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--------------KLLNV 188 (230)
T ss_dssp CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--------------HHHHH
T ss_pred ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH--------------hHHHH
Confidence 99999998655443321 136899999999999999999643210 13456
Q ss_pred HHHHhhhccee
Q 043471 183 YSKVFKECQIQ 193 (485)
Q Consensus 183 ~~~~~~~~~~~ 193 (485)
+.+.+++.|+.
T Consensus 189 ~~~~l~~~g~~ 199 (230)
T 3evz_A 189 IKERGIKLGYS 199 (230)
T ss_dssp HHHHHHHTTCE
T ss_pred HHHHHHHcCCc
Confidence 67778887773
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=145.10 Aligned_cols=137 Identities=22% Similarity=0.361 Sum_probs=100.1
Q ss_pred HhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHH
Q 043471 16 YWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE 94 (485)
Q Consensus 16 yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~ 94 (485)
||+.+.....+..|+.|... ....++.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+| .+++.|++
T Consensus 3 Yf~~y~~~~~~~~ml~d~~r---~~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~ 78 (328)
T 1g6q_1 3 YFDSYDHYGIHEEMLQDTVR---TLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKE 78 (328)
T ss_dssp CCCCCCCHHHHHHHHTCHHH---HHHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHH
T ss_pred hhhhhcCchHHHHHhcCHHH---HHHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHH
Confidence 56555544455556554322 123444555555556788999999999999999999875 89999999 59998888
Q ss_pred HcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC-hHHHHHHHHHHHhhcccCcEEEEE
Q 043471 95 VNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS-DKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 95 ~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+.. ..++++++++|+.+ +++++++||+|++..+.+++. ......++.++.++|+|||.++..
T Consensus 79 ~~~~~~~~~~i~~~~~d~~~--~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 79 LVELNGFSDKITLLRGKLED--VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp HHHHTTCTTTEEEEESCTTT--SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHcCCCCCEEEEECchhh--ccCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 643 22479999999988 455678999999986544432 222668999999999999999753
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-14 Score=135.03 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=105.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeC-CHHHHHHHHHHh-----cCCC------CCeEEEEc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDL-SINMISFALERA-----IGLK------CSVEFEVA 338 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~-s~~~~~~a~~~~-----~~~~------~~i~~~~~ 338 (485)
...+.+.....++.+|||+|||+|.++..+++. +. +|+|+|+ |+.+++.|++++ ...+ .++++...
T Consensus 68 ~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~ 146 (281)
T 3bzb_A 68 ADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY 146 (281)
T ss_dssp HHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred HHHHHhcchhcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence 334444444457789999999999999988886 55 9999999 899999999988 3222 36777766
Q ss_pred cCCCCC--C----CCCCccEEEEcccccccCCHHHHHHHHHhcCC---C--CcEEEEEecccCCCCCChhHHHHHHhcCC
Q 043471 339 DCTKKT--Y----PENSFDVIYSRDTILHIQDKPALFKSFFKWLK---P--GGTVLISDYCKSFGTPSVEFSEYIKQRGY 407 (485)
Q Consensus 339 d~~~~~--~----~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lk---p--gG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 407 (485)
|..+.. + ++++||+|++..+++|.++...+++.+.++|+ | ||++++........
T Consensus 147 ~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~--------------- 211 (281)
T 3bzb_A 147 RWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPH--------------- 211 (281)
T ss_dssp CTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC-------------------
T ss_pred cCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecc---------------
Confidence 654421 1 35789999999999999999999999999999 9 99987753221100
Q ss_pred CCCCHHHHHHHHHhCC-CeEEEEeec
Q 043471 408 DLHDVKSYGQMLKDAG-FVDIIAEDR 432 (485)
Q Consensus 408 ~~~~~~~~~~~l~~aG-f~~~~~~~~ 432 (485)
.......+.+.++++| |++..+...
T Consensus 212 ~~~~~~~~~~~l~~~G~f~v~~~~~~ 237 (281)
T 3bzb_A 212 LAERDLAFFRLVNADGALIAEPWLSP 237 (281)
T ss_dssp ----CTHHHHHHHHSTTEEEEEEECC
T ss_pred cchhHHHHHHHHHhcCCEEEEEeccc
Confidence 0011345667889999 998877543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-15 Score=134.84 Aligned_cols=118 Identities=16% Similarity=0.191 Sum_probs=90.2
Q ss_pred hhhHHHhccCCCC-CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC--CC--CCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLPPY-EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG--HF--ENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~--~~--~~~~~~~~d~~~~~~ 114 (485)
..+..+++.+... ++.+|||+|||+|.++..++.++. +|+|+|+|+.|++.|+++.. .. ++++++++|+.+...
T Consensus 39 ~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~ 118 (201)
T 2ift_A 39 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK 118 (201)
T ss_dssp HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHH
Confidence 4444555555432 678999999999999998877764 89999999999999998753 22 489999999876322
Q ss_pred CCCCCC-eeEEEhhhhhhccChHHHHHHHHHH--HhhcccCcEEEEEecc
Q 043471 115 TFSEDS-VDMMFSNWLLMYLSDKEVEKLAERM--VKWLKVGGYIFFRESC 161 (485)
Q Consensus 115 ~~~~~~-~D~v~~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~ 161 (485)
..++++ ||+|+++..+ +... ...+++.+ .++|+|||.+++....
T Consensus 119 ~~~~~~~fD~I~~~~~~-~~~~--~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 119 QPQNQPHFDVVFLDPPF-HFNL--AEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp SCCSSCCEEEEEECCCS-SSCH--HHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred hhccCCCCCEEEECCCC-CCcc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 223578 9999998663 3444 66888888 6789999999997654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=139.46 Aligned_cols=110 Identities=24% Similarity=0.277 Sum_probs=92.2
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+.+.+...++.+|||||||+|.++..+++....+|+|+|+|+ |++.|++++. ++..+++++.+|+.++++++++||
T Consensus 55 ~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 133 (340)
T 2fyt_A 55 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD 133 (340)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred HHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence 4444455677889999999999999999987334999999997 9999998875 344689999999999988888999
Q ss_pred EEEEcc---cccccCCHHHHHHHHHhcCCCCcEEEE
Q 043471 352 VIYSRD---TILHIQDKPALFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 352 ~i~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~i 384 (485)
+|++.. .+.+..+...+++++.++|||||+++.
T Consensus 134 ~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 134 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred EEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 999976 455556788899999999999999873
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-15 Score=134.82 Aligned_cols=130 Identities=13% Similarity=0.077 Sum_probs=102.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC---CCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP---ENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~---~~~fD~i~~ 355 (485)
..++.+|||||||+|..+..++... +.+|+++|+|+.+++.|++++..++ .+++++++|+.+.+.. .++||+|++
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence 4567899999999999999999875 6799999999999999999886433 2599999999876542 478999999
Q ss_pred cccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 356 RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
.. +.+...+++.+.++|||||++++..... ... ....+.+.++..||++..+...
T Consensus 158 ~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~----~~~--------------e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 158 RA----VAPLCVLSELLLPFLEVGGAAVAMKGPR----VEE--------------ELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp ES----SCCHHHHHHHHGGGEEEEEEEEEEECSC----CHH--------------HHTTHHHHHHHHTEEEEEEEEE
T ss_pred CC----cCCHHHHHHHHHHHcCCCeEEEEEeCCC----cHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence 75 3578899999999999999998863211 000 1235667788889998877654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=141.49 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=98.1
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHH-------HHHhcCCC---CCeEEEE
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFA-------LERAIGLK---CSVEFEV 337 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a-------~~~~~~~~---~~i~~~~ 337 (485)
...+..+++.+.+.++.+|||||||+|.++..+++..+ .+|+|+|+++.+++.| ++++...+ .++++++
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 46678888999999999999999999999999998765 4899999999999988 77765333 5899988
Q ss_pred ccCCCC--CC--CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 338 ADCTKK--TY--PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 338 ~d~~~~--~~--~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
+|.... ++ ..++||+|+++.++ +.++...+|+++.++|||||++++.+....
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred cCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 765432 12 24789999998766 446888899999999999999999865443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=140.76 Aligned_cols=143 Identities=15% Similarity=0.258 Sum_probs=111.1
Q ss_pred HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+++.++ ..++.+|||||||+|..+..++++ +.+++++|+ +.+++.|++. ++++++.+|+.+ ++ +.+
T Consensus 190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~--p~~- 260 (364)
T 3p9c_A 190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----PGVTHVGGDMFK-EV--PSG- 260 (364)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-CC--CCC-
T ss_pred HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----CCeEEEeCCcCC-CC--CCC-
Confidence 45666665 556789999999999999999987 458999999 8888776643 689999999976 34 443
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------c-----CCCCCCCCChhHHHHH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------R-----KHNPTHYREPRFYSKV 186 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~~~ 186 (485)
|+|++..++|+++++...+++++++++|+|||++++.+.......... + .......++.+.|..+
T Consensus 261 -D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~l 339 (364)
T 3p9c_A 261 -DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQAL 339 (364)
T ss_dssp -SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHH
T ss_pred -CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHH
Confidence 999999999999988888999999999999999999887654322110 0 0112233467889999
Q ss_pred hhhcceecCC
Q 043471 187 FKECQIQDAS 196 (485)
Q Consensus 187 ~~~~~~~~~~ 196 (485)
++++||+...
T Consensus 340 l~~AGF~~v~ 349 (364)
T 3p9c_A 340 ARGAGFTGVK 349 (364)
T ss_dssp HHHTTCCEEE
T ss_pred HHHCCCceEE
Confidence 9999996543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-14 Score=133.92 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 346 (485)
....++..+.+.++.+|||+|||+|.++..+++.. +.+++++|+|+.+++.|++++...+ .++++..+|+.+. ++
T Consensus 100 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~ 178 (277)
T 1o54_A 100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FD 178 (277)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CS
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-cc
Confidence 34567788888999999999999999999999884 5799999999999999999876433 4799999999876 56
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+++||+|++ +.+++..+++++.++|+|||++++..... .....+.+.|+++||..
T Consensus 179 ~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~--------------------~~~~~~~~~l~~~gf~~ 233 (277)
T 1o54_A 179 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT--------------------NQVQETLKKLQELPFIR 233 (277)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH--------------------HHHHHHHHHHHHSSEEE
T ss_pred CCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH--------------------HHHHHHHHHHHHCCCce
Confidence 678999998 45678899999999999999999986321 01345677888899998
Q ss_pred EEEee
Q 043471 427 IIAED 431 (485)
Q Consensus 427 ~~~~~ 431 (485)
+....
T Consensus 234 ~~~~~ 238 (277)
T 1o54_A 234 IEVWE 238 (277)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 76643
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=129.05 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=96.0
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC---CCCCeeEE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF---SEDSVDMM 124 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~D~v 124 (485)
..++..+|.+|||||||. +++|+|+.|++.|+++.. .+++++++|+.+ +++ ++++||+|
T Consensus 6 ~~~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~--~~~~~~~~d~~~--~~~~~~~~~~fD~V 67 (176)
T 2ld4_A 6 ADFGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTG--NEGRVSVENIKQ--LLQSAHKESSFDII 67 (176)
T ss_dssp TTTTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTT--TTSEEEEEEGGG--GGGGCCCSSCEEEE
T ss_pred hccCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcc--cCcEEEEechhc--CccccCCCCCEeEE
Confidence 345667899999999996 249999999999999875 369999999998 545 78899999
Q ss_pred Ehhhhhhcc-ChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 125 FSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 125 ~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
+|+.+++|+ ++ ...++++++|+|||||++++.++..... ....+..+.+.+...++++||
T Consensus 68 ~~~~~l~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 68 LSGLVPGSTTLH--SAEILAEIARILRPGGCLFLKEPVETAV------DNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp EECCSTTCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSS------CSSSSSCCHHHHHHHHHHTTC
T ss_pred EECChhhhcccC--HHHHHHHHHHHCCCCEEEEEEccccccc------ccccccCCHHHHHHHHHHCCC
Confidence 999999999 76 5699999999999999999976543211 112333467889999999998
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-15 Score=132.47 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++++++++|+..++..+++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 35779999999999999999988 6799999999999999998753 2358999999998732115678999998865
Q ss_pred hhhccChH------HHHHHHHHHHhhcccCcEEEEEe
Q 043471 129 LLMYLSDK------EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 129 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...+.... ....+++++.++|+|||.+++..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 43333211 02579999999999999999964
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=9e-15 Score=137.46 Aligned_cols=127 Identities=16% Similarity=0.225 Sum_probs=97.0
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTF 116 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~ 116 (485)
...+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... ++++++++|+.+ ++
T Consensus 99 ~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~---~~ 175 (275)
T 1yb2_A 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FI 175 (275)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CC
T ss_pred HHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhc---cC
Confidence 346667777888899999999999999999987 679999999999999999876433 589999999976 23
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
++++||+|++ +.++ ...+++++.++|+|||++++.++... ..+.+...+++.||..
T Consensus 176 ~~~~fD~Vi~-----~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~---------------~~~~~~~~l~~~Gf~~ 231 (275)
T 1yb2_A 176 SDQMYDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLPNFD---------------QSEKTVLSLSASGMHH 231 (275)
T ss_dssp CSCCEEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEESSHH---------------HHHHHHHHSGGGTEEE
T ss_pred cCCCccEEEE-----cCcC--HHHHHHHHHHHcCCCCEEEEEeCCHH---------------HHHHHHHHHHHCCCeE
Confidence 5678999998 4455 34899999999999999999865321 2345566677777743
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-15 Score=134.03 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=85.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCC-CCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSP-DLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~-~~~~~~~~~D~v~~~~ 128 (485)
++.+|||||||+|.++..+++.. .+|+|+|+|+++++.|+++.. ...|+.++++|+.++ +..+++++||.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999884 579999999999999988753 235899999998773 1125789999999986
Q ss_pred hhhccChHHH------HHHHHHHHhhcccCcEEEEEec
Q 043471 129 LLMYLSDKEV------EKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 129 ~~~~~~~~~~------~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...+...... ..+++++.++|||||.+++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 5444332211 2599999999999999999654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-14 Score=140.89 Aligned_cols=106 Identities=19% Similarity=0.244 Sum_probs=90.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+ +++++++|+.+ .+.++++||+|+++..++
T Consensus 232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~--~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDE--ALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTT--TSCTTCCEEEEEECCCCC
T ss_pred CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhh--ccccCCCeEEEEECCchh
Confidence 467899999999999999999999999999999999999998754322 58999999987 444568999999998888
Q ss_pred c---cChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 132 Y---LSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 132 ~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ ........+++++.++|+|||.+++...
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 7 3334477999999999999999999644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=139.04 Aligned_cols=111 Identities=20% Similarity=0.274 Sum_probs=93.7
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCc---EEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGH---VIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDL 114 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~ 114 (485)
+.....+++.+...++.+|||||||+|.++..+++.+.+ |+|+|+|+++++.|+++... ..+++++++|+.+.
T Consensus 61 ~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~-- 138 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG-- 138 (317)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC--
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc--
Confidence 355677888888888999999999999999999998665 99999999999999987532 24699999999873
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+.++++||+|++..+++|++ +++.++|||||.+++...
T Consensus 139 ~~~~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 139 VPEFSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp CGGGCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred cccCCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence 33467899999999999987 357889999999999754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-15 Score=133.88 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCC-hHHHHHH---HHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFI-DSVIKKN---EEVNG--HFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s-~~~~~~a---~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++.+|||||||+|.++..++++ +.+|+|+|+| +.|++.| +++.. ..+++.++++|+..++..+ .+.+|.|
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~-~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL-KNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG-TTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhc-cCeEEEE
Confidence 46789999999999999999954 6789999999 7777776 55432 2358999999998843211 2566666
Q ss_pred Ehhhhhhc----c-ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 125 FSNWLLMY----L-SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 125 ~~~~~~~~----~-~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++....+ . .+ ...++++++|+|||||.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~--~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKP--NRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp EEESCCHHHHHHHHTT--CHHHHHHHHTTEEEEEEEEEE
T ss_pred EEeCCCcHHhhhhhcc--hHHHHHHHHHhcCCCcEEEEE
Confidence 65532211 1 11 247899999999999999994
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-15 Score=144.33 Aligned_cols=155 Identities=16% Similarity=0.273 Sum_probs=92.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcC------------CCCCeEEE
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIG------------LKCSVEFE 336 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~------------~~~~i~~~ 336 (485)
....++..+.+.++.+|||+|||+|.++..+++..+ .+|+|+|+++.+++.|++++.. ...++++.
T Consensus 93 ~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 356677777888999999999999999999998753 7999999999999999998763 23579999
Q ss_pred EccCCCC--CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhc---------
Q 043471 337 VADCTKK--TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQR--------- 405 (485)
Q Consensus 337 ~~d~~~~--~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~--------- 405 (485)
.+|+.+. ++++++||+|++. .+++..+++++.++|||||++++....... .......+...
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 244 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNITQ---VIELLDGIRTCELALSCEKI 244 (336)
T ss_dssp ESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSHHH---HHHHHHHHHHHTCCEEEEEE
T ss_pred ECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCHHH---HHHHHHHHHhcCCCcccceE
Confidence 9999886 4566789999984 345556899999999999999987643211 00111111110
Q ss_pred ------CCCC----CCHHHHHHHHHhCCCeEEEEeecc
Q 043471 406 ------GYDL----HDVKSYGQMLKDAGFVDIIAEDRT 433 (485)
Q Consensus 406 ------~~~~----~~~~~~~~~l~~aGf~~~~~~~~~ 433 (485)
.+.. ....++.+.|+++||+++++....
T Consensus 245 ~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 245 SEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp ECCCCCCEEECC--------------------------
T ss_pred EEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 0000 011278899999999998876543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-15 Score=136.22 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCC-CCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEE-ccCCC
Q 043471 270 ETTKEFVAKLDLK-PGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL----KCSVEFEV-ADCTK 342 (485)
Q Consensus 270 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~-~d~~~ 342 (485)
.++.++++.+.+. ++.+|||||||+|.++..+++. + .+|+|+|+|+.|++.|+++.... ..++.+.. .|+..
T Consensus 23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (232)
T 3opn_A 23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ 101 (232)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS
T ss_pred HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc
Confidence 3566778888665 4669999999999999999988 5 49999999999999987754311 01222222 22221
Q ss_pred CCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCC------CCCCHHHHH
Q 043471 343 KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY------DLHDVKSYG 416 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 416 (485)
..||.+.+..++.++ ..++++++|+|||||++++.. .+..... .......+. ...+.+++.
T Consensus 102 -----~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~p~~e~~---~~~~~~~G~~~d~~~~~~~~~~l~ 168 (232)
T 3opn_A 102 -----GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--KPQFEAG---REQVGKNGIIRDPKVHQMTIEKVL 168 (232)
T ss_dssp -----CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CHHHHSC---HHHHC-CCCCCCHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--CcccccC---HHHhCcCCeecCcchhHHHHHHHH
Confidence 123444443333333 789999999999999999863 1100000 001101110 113578899
Q ss_pred HHHHhCCCeEEEEee
Q 043471 417 QMLKDAGFVDIIAED 431 (485)
Q Consensus 417 ~~l~~aGf~~~~~~~ 431 (485)
++++++||+++.+..
T Consensus 169 ~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 169 KTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHTEEEEEEEE
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999999987754
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=129.58 Aligned_cols=105 Identities=9% Similarity=0.122 Sum_probs=87.2
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCC-CCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTK-KTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~-~~~~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..++.+...+|+|+|+|+.|++.|++++...+ .+++++++|+.+ ++.++++||+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~- 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC-
Confidence 578999999999999998777743599999999999999999886444 489999999876 45556789999998774
Q ss_pred ccCCHHHHHHHHHh--cCCCCcEEEEEecc
Q 043471 361 HIQDKPALFKSFFK--WLKPGGTVLISDYC 388 (485)
Q Consensus 361 ~~~~~~~~l~~~~~--~LkpgG~l~i~~~~ 388 (485)
+..+...+++.+.+ +|+|||.+++....
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 45678888999866 59999999988654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=130.37 Aligned_cols=106 Identities=18% Similarity=0.342 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc-------CCCCCeEEEEccCCC-CC--CCCCC
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI-------GLKCSVEFEVADCTK-KT--YPENS 349 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~-------~~~~~i~~~~~d~~~-~~--~~~~~ 349 (485)
..++.+|||||||+|.++..+++.. +..++|+|+|+.|++.|++++. ....++.++++|+.+ ++ +++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 4556799999999999999999886 5799999999999999987753 122479999999987 55 67889
Q ss_pred ccEEEEcccccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||.|++...-.+... ...+++++.++|||||.+++..
T Consensus 124 ~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 999987544322211 1579999999999999999874
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=131.30 Aligned_cols=108 Identities=18% Similarity=0.255 Sum_probs=81.8
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHc--------CCCCCeEEEEeeccCCCCC--CCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVN--------GHFENVKFMCADVTSPDLT--FSED 119 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~--------~~~~~~~~~~~d~~~~~~~--~~~~ 119 (485)
..++.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++. ....|++++++|+.+. ++ ++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~-l~~~~~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH-LPNFFYKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC-HHHHCCTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh-hhhhCCCc
Confidence 345678999999999999999987 468999999999999988653 2346899999999762 33 6788
Q ss_pred CeeEEEhhhhhhccChHH------HHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKE------VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||.|+++..-.|..... ...+++++.++|+|||.+++...
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 999998765433322100 14799999999999999998643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=126.31 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=95.5
Q ss_pred chHHHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCC
Q 043471 268 GIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKT 344 (485)
Q Consensus 268 ~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~ 344 (485)
.......+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++.. ...+++++++|+.+..
T Consensus 28 ~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 107 (187)
T 2fhp_A 28 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL 107 (187)
T ss_dssp CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHH
Confidence 3455566666663 457889999999999999988886446999999999999999998753 3347999999987631
Q ss_pred ----CCCCCccEEEEcccccccCCHHHHHHHH--HhcCCCCcEEEEEeccc
Q 043471 345 ----YPENSFDVIYSRDTILHIQDKPALFKSF--FKWLKPGGTVLISDYCK 389 (485)
Q Consensus 345 ----~~~~~fD~i~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~~~~ 389 (485)
.++++||+|++...++ ..+....++.+ .++|+|||.+++.....
T Consensus 108 ~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 108 EQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2257899999988754 45778888888 89999999999986543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=139.42 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=89.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+.++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++. ++..+++++.+|+.++++++++||+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 45678999999999999999998833499999999 49999999876 4445699999999999988899999999765
Q ss_pred cc---ccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 359 IL---HIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 359 ~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+ +..+...+++++.++|||||+++..
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 43 4478999999999999999998754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.53 E-value=4e-14 Score=127.92 Aligned_cols=113 Identities=28% Similarity=0.291 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.+.++.+|||+|||+|.++..+++..+ .+|+++|+|+.+++.|++++...+ .++++..+|+......
T Consensus 64 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP 143 (215)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG
T ss_pred HHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC
Confidence 4566778888888999999999999999999998864 799999999999999999875322 3689999998543223
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++||+|++..+++|++ +++.++|||||++++....
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 57899999999999986 4889999999999998643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-14 Score=128.47 Aligned_cols=134 Identities=20% Similarity=0.190 Sum_probs=106.1
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
....+.+..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++... .++++++++|+.+ .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~ 94 (192)
T 1l3i_A 16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-A 94 (192)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-H
T ss_pred CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-h
Confidence 34556677778888888899999999999999999999889999999999999999986432 2579999999875 1
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
++ ..++||+|++..++++ ...+++++.++|+|||.+++...... ....+...+++.||
T Consensus 95 ~~-~~~~~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~~---------------~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 95 LC-KIPDIDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILLE---------------TKFEAMECLRDLGF 152 (192)
T ss_dssp HT-TSCCEEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBHH---------------HHHHHHHHHHHTTC
T ss_pred cc-cCCCCCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCcc---------------hHHHHHHHHHHCCC
Confidence 21 1258999999876654 35799999999999999999765321 34556777888887
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=131.74 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=107.0
Q ss_pred HHhccCCCC-CCCcEEEEcCCC--CcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCC--
Q 043471 45 EVLSLLPPY-EGKTVLEFGAGI--GRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDL-- 114 (485)
Q Consensus 45 ~~~~~~~~~-~~~~vLDiGcG~--G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~-- 114 (485)
+....+... ...+|||||||+ +.++..++++ +.+|+++|.|+.|++.|+++.... .+++|+++|+.+++.
T Consensus 68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l 147 (277)
T 3giw_A 68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASIL 147 (277)
T ss_dssp HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHH
T ss_pred HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhh
Confidence 344444433 346899999998 4455666554 679999999999999999987653 369999999987421
Q ss_pred --CCCCCCee-----EEEhhhhhhccChHH-HHHHHHHHHhhcccCcEEEEEeccCCCCCc--------cccCCCCCCCC
Q 043471 115 --TFSEDSVD-----MMFSNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRESCFHQSGD--------SKRKHNPTHYR 178 (485)
Q Consensus 115 --~~~~~~~D-----~v~~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--------~~~~~~~~~~~ 178 (485)
+...+.|| .|+++.+|||+++.. ...+++++.+.|+|||+|++++.+...... ......+..++
T Consensus 148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~r 227 (277)
T 3giw_A 148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLR 227 (277)
T ss_dssp TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCC
T ss_pred cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccC
Confidence 10024455 588999999999865 578999999999999999999876542211 01233456677
Q ss_pred ChhHHHHHhhhcceecC
Q 043471 179 EPRFYSKVFKECQIQDA 195 (485)
Q Consensus 179 ~~~~~~~~~~~~~~~~~ 195 (485)
+.+.+..+|. ||...
T Consensus 228 s~~ei~~~f~--Glelv 242 (277)
T 3giw_A 228 THAEAEEFFE--GLELV 242 (277)
T ss_dssp CHHHHHHTTT--TSEEC
T ss_pred CHHHHHHHhC--CCccc
Confidence 8888888885 66543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=128.98 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=87.0
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
...++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.|+++... .++++++++|+.++. .+.+++||+|
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v 97 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMD-KYIDCPVKAV 97 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGG-GTCCSCEEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHh-hhccCCceEE
Confidence 3456889999999999999999987 2 5999999999999999987543 257999999998742 1456899999
Q ss_pred Ehhhhh-h-----c-cChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 125 FSNWLL-M-----Y-LSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 125 ~~~~~~-~-----~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++..+ . + ........+++++.++|+|||++++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 987644 1 1 11223567999999999999999997654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.9e-15 Score=127.67 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=92.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCC-CCCC
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTK-KTYP 346 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~-~~~~ 346 (485)
....+++.+. ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...+ .++++..+|+.+ ++..
T Consensus 18 ~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 18 VRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL 97 (177)
T ss_dssp CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred HHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence 3445566665 56788999999999999999998733599999999999999999986543 468999999876 3333
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHH--hcCCCCcEEEEEeccc
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFF--KWLKPGGTVLISDYCK 389 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 389 (485)
+++||+|++...++ ......+++.+. ++|+|||.+++.....
T Consensus 98 ~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 98 TGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp CSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 46799999987653 235667778887 9999999999986544
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.6e-14 Score=125.20 Aligned_cols=126 Identities=13% Similarity=0.103 Sum_probs=102.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
++++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++. ++..++++..+|..+...++++||+|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG 98 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG 98 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence 4578899999999999999999874 3489999999999999999986 444679999999988665445799988765
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+.- .-...++.+..+.|+++|+|+++- ....+.+++.|.++||.+++..
T Consensus 99 mGg--~lI~~IL~~~~~~l~~~~~lIlqp----------------------~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 99 MGG--RLIADILNNDIDKLQHVKTLVLQP----------------------NNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp ECH--HHHHHHHHHTGGGGTTCCEEEEEE----------------------SSCHHHHHHHHHHTTEEEEEEE
T ss_pred Cch--HHHHHHHHHHHHHhCcCCEEEEEC----------------------CCChHHHHHHHHHCCCEEEEEE
Confidence 433 235678889999999999999982 1236789999999999987644
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=136.75 Aligned_cols=113 Identities=23% Similarity=0.299 Sum_probs=96.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~ 346 (485)
.....+++.+.+.++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...+ .++++..+|+.+.+.+
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE 141 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence 5677888888899999999999999999999998752 469999999999999999876433 3599999999886545
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++||+|++..+++|+. +++.++|||||++++....
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 67899999999999987 5788999999999998543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-14 Score=129.97 Aligned_cols=113 Identities=21% Similarity=0.258 Sum_probs=92.9
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.+.....+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++... .++++++.+|+...
T Consensus 62 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~- 140 (215)
T 2yxe_A 62 AIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLG- 140 (215)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGC-
T ss_pred cHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC-
Confidence 34455677888888889999999999999999999885 7999999999999999987532 24799999998542
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+ ..+++||+|++..+++|+++ ++.++|+|||.+++....
T Consensus 141 ~-~~~~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 141 Y-EPLAPYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp C-GGGCCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEESS
T ss_pred C-CCCCCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEECC
Confidence 2 13578999999999999873 688999999999997543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-15 Score=127.74 Aligned_cols=118 Identities=10% Similarity=0.124 Sum_probs=90.2
Q ss_pred hhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCC
Q 043471 40 KEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDL 114 (485)
Q Consensus 40 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~ 114 (485)
...+..+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.... ++++++++|+.+. +
T Consensus 16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~ 94 (177)
T 2esr_A 16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-I 94 (177)
T ss_dssp --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-H
T ss_pred HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh-H
Confidence 345566666665 5678899999999999999999885 59999999999999999876433 3699999998762 2
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHH--hhcccCcEEEEEecc
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV--KWLKVGGYIFFRESC 161 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~ 161 (485)
+..+++||+|+++..++. .. ....++.+. ++|+|||.+++....
T Consensus 95 ~~~~~~fD~i~~~~~~~~-~~--~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 95 DCLTGRFDLVFLDPPYAK-ET--IVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHBCSCEEEEEECCSSHH-HH--HHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred HhhcCCCCEEEECCCCCc-ch--HHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 223467999999865432 22 456777776 999999999997654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=127.99 Aligned_cols=107 Identities=20% Similarity=0.314 Sum_probs=85.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++++++++|+.+++-.+++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 45779999999999999999988 5689999999999999988753 2258999999998732116678999999986
Q ss_pred hhhccChH------HHHHHHHHHHhhcccCcEEEEEe
Q 043471 129 LLMYLSDK------EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 129 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...+.... ....+++++.++|+|||.+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 54433211 12579999999999999999964
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.4e-14 Score=130.15 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=105.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~ 111 (485)
+.+.....++..+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++.. ...+++++++|+.+
T Consensus 77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 156 (255)
T 3mb5_A 77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE 156 (255)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence 45556677888888889999999999999999999998 6799999999999999998753 22359999999985
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
. +++++||+|+++ .++ ...+++++.++|+|||.+++..+... ....+...+++.|
T Consensus 157 ~---~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~~g 211 (255)
T 3mb5_A 157 G---IEEENVDHVILD-----LPQ--PERVVEHAAKALKPGGFFVAYTPCSN---------------QVMRLHEKLREFK 211 (255)
T ss_dssp C---CCCCSEEEEEEC-----SSC--GGGGHHHHHHHEEEEEEEEEEESSHH---------------HHHHHHHHHHHTG
T ss_pred c---cCCCCcCEEEEC-----CCC--HHHHHHHHHHHcCCCCEEEEEECCHH---------------HHHHHHHHHHHcC
Confidence 3 467889999984 344 34799999999999999999755321 2345667777777
Q ss_pred --eec
Q 043471 192 --IQD 194 (485)
Q Consensus 192 --~~~ 194 (485)
|..
T Consensus 212 ~~f~~ 216 (255)
T 3mb5_A 212 DYFMK 216 (255)
T ss_dssp GGBSC
T ss_pred CCccc
Confidence 744
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=125.68 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=103.7
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCC
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDL 114 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~ 114 (485)
.........+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++... .++++++++|+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~--- 94 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED--- 94 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---
Confidence 34456667788888878889999999999999999999888999999999999999987532 2579999999976
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
++++++||+|+++.+ .+ ...+++++.++ |||.+++...... ......+.+++.|+
T Consensus 95 ~~~~~~~D~i~~~~~----~~--~~~~l~~~~~~--~gG~l~~~~~~~~---------------~~~~~~~~l~~~g~ 149 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KN--IEKIIEILDKK--KINHIVANTIVLE---------------NAAKIINEFESRGY 149 (183)
T ss_dssp HGGGCCCSEEEECSC----SC--HHHHHHHHHHT--TCCEEEEEESCHH---------------HHHHHHHHHHHTTC
T ss_pred cccCCCCcEEEECCc----cc--HHHHHHHHhhC--CCCEEEEEecccc---------------cHHHHHHHHHHcCC
Confidence 235579999999876 33 56899999998 9999999765321 23456677777775
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-14 Score=139.36 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=92.5
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC-----CCeEEEEeeccCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF-----ENVKFMCADVTSPDLT 115 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~ 115 (485)
.+.+++.++..++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... .+++++.+|+.+ +
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~---~ 287 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS---G 287 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT---T
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc---c
Confidence 346788888877899999999999999999998 579999999999999999865321 258889999876 2
Q ss_pred CCCCCeeEEEhhhhhhcc---ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLMYL---SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+++++||+|+++..+++. .+....++++++.++|+|||.+++...
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 456899999999877753 333355799999999999999999643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=132.79 Aligned_cols=113 Identities=11% Similarity=0.116 Sum_probs=88.5
Q ss_pred HhccCCCC-CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCC
Q 043471 46 VLSLLPPY-EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 46 ~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
+...+... ++.+|||+|||+|.++..+++++. +|+|+|+++.+++.|+++... ..+++++++|+.+....+++++
T Consensus 40 l~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~ 119 (259)
T 3lpm_A 40 LAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKER 119 (259)
T ss_dssp HHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTC
T ss_pred HHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCC
Confidence 33445566 788999999999999999999865 999999999999999987532 2369999999988543355789
Q ss_pred eeEEEhhhhhhcc------------------ChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYL------------------SDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|+++-.+... .......+++.+.++|+|||.+++.
T Consensus 120 fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 175 (259)
T 3lpm_A 120 ADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV 175 (259)
T ss_dssp EEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence 9999997433222 1123568999999999999999995
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=128.36 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=90.3
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC---CC--CCeEEEEccCCCC-------
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG---LK--CSVEFEVADCTKK------- 343 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~---~~--~~i~~~~~d~~~~------- 343 (485)
..+...++.+|||+|||+|.++..++++. +.+|+|+|+++.+++.|++++.. .+ .+++++++|+.+.
T Consensus 30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~ 109 (260)
T 2ozv_A 30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA 109 (260)
T ss_dssp HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT
T ss_pred HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh
Confidence 33456678899999999999999999986 57999999999999999999865 33 3599999999886
Q ss_pred CCCCCCccEEEEccccccc------------------CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 344 TYPENSFDVIYSRDTILHI------------------QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++++++||+|+++..+... .+...+++.+.++|||||++++..
T Consensus 110 ~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 110 GLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3567899999998544322 247889999999999999998873
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=133.63 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=92.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCC---CCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFS---EDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~---~~~~D~v~ 125 (485)
.++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++... .++++++++|+.+ ++++ +++||+|+
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAET--FGQRKDVRESYDIVT 146 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHH--HTTCTTTTTCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHH--hcccccccCCccEEE
Confidence 46789999999999999999954 67999999999999999886432 2479999999987 3332 57999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+.. +.+ ...+++++.++|+|||.+++...... ......+...++..|+..
T Consensus 147 ~~~----~~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-------------~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 147 ARA----VAR--LSVLSELCLPLVKKNGLFVALKAASA-------------EEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEC----CSC--HHHHHHHHGGGEEEEEEEEEEECC-C-------------HHHHHHHHHHHHHTTEEE
T ss_pred Eec----cCC--HHHHHHHHHHhcCCCCEEEEEeCCCc-------------hHHHHHHHHHHHHcCCeE
Confidence 876 344 67899999999999999988532110 011234556677777743
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.6e-15 Score=131.69 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=90.8
Q ss_pred cChhhhHHHhccCCCC-CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 38 LDKEERPEVLSLLPPY-EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
.....+..+++.+... ++.+|||+|||+|.++..+++++. +|+|+|+|+.|++.|+++... ..+++++++|+.+.
T Consensus 37 ~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~- 115 (202)
T 2fpo_A 37 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSF- 115 (202)
T ss_dssp -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHH-
T ss_pred CHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHH-
Confidence 3444555566555442 678999999999999999888764 899999999999999987532 24899999998763
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEecc
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRESC 161 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~ 161 (485)
++..+++||+|++...+ +... ...+++.+.+ +|+|||.+++....
T Consensus 116 ~~~~~~~fD~V~~~~p~-~~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 116 LAQKGTPHNIVFVDPPF-RRGL--LEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HSSCCCCEEEEEECCSS-STTT--HHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred HhhcCCCCCEEEECCCC-CCCc--HHHHHHHHHhcCccCCCcEEEEEECC
Confidence 23356789999987653 3443 5578888865 59999999997654
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-14 Score=128.37 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcC--CC-CCeEEEEccCCCC-
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIG--LK-CSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~-~~i~~~~~d~~~~- 343 (485)
..+..++.....+++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++.. .. .+++++.+|+.+.
T Consensus 43 ~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l 122 (221)
T 3dr5_A 43 QLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVM 122 (221)
T ss_dssp HHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHG
T ss_pred HHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHH
Confidence 344445555555556699999999999999999875 57999999999999999999863 43 5799999988664
Q ss_pred -CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 344 -TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 344 -~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.+++++||+|++... ..+...+++++.++|||||.+++.+...
T Consensus 123 ~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 123 SRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp GGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred HHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 233689999998653 3567889999999999999999976543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-15 Score=129.99 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=89.5
Q ss_pred ChhhhHHHhccCCC--CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCC--
Q 043471 39 DKEERPEVLSLLPP--YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPD-- 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~-- 113 (485)
....+..+++.+.. .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+ +++++++|+.+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~ 103 (171)
T 1ws6_A 24 PVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPE 103 (171)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHh
Confidence 34455556655543 267899999999999999999998889999999999999998754222 7999999987621
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHH--hhcccCcEEEEEeccC
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMV--KWLKVGGYIFFRESCF 162 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 162 (485)
.+...++||+|+++..++ .. ....++.+. ++|+|||.+++.....
T Consensus 104 ~~~~~~~~D~i~~~~~~~--~~--~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 104 AKAQGERFTVAFMAPPYA--MD--LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHTTCCEEEEEECCCTT--SC--TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred hhccCCceEEEEECCCCc--hh--HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 111124899999987655 22 235666666 9999999999976643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.6e-14 Score=130.01 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=84.3
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCee
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVD 122 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D 122 (485)
++.+...++.+|||+|||+|.++..|++. + .+|+|+|+|+.+++.+.+......+++++++|+.+.. +++.+++||
T Consensus 70 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D 149 (233)
T 2ipx_A 70 VDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVD 149 (233)
T ss_dssp CSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred HheecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEE
Confidence 34556677889999999999999999987 2 6899999998877665554332268999999998743 344578999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|++... .++ ....++.++.++|+|||.++++.
T Consensus 150 ~V~~~~~---~~~-~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 150 VIFADVA---QPD-QTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp EEEECCC---CTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEcCC---Ccc-HHHHHHHHHHHHcCCCeEEEEEE
Confidence 9998643 222 24567889999999999999953
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-16 Score=146.67 Aligned_cols=100 Identities=19% Similarity=0.196 Sum_probs=86.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.... ++++++++|+.+. + ++++||+|+++.++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLL--A-SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH--G-GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHh--c-ccCCCCEEEECCCc
Confidence 6889999999999999999999999999999999999999875322 3799999999873 3 56799999999888
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++.... ...+.++.++|+|||.+++.
T Consensus 155 ~~~~~~--~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 155 GGPDYA--TAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp SSGGGG--GSSSBCTTTSCSSCHHHHHH
T ss_pred CCcchh--hhHHHHHHhhcCCcceeHHH
Confidence 888763 35778899999999997764
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=126.85 Aligned_cols=109 Identities=18% Similarity=0.331 Sum_probs=89.6
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-C-CCCCCccE
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-T-YPENSFDV 352 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~-~~~~~fD~ 352 (485)
.+...++.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++.. +..+++++.+|+.+. + ..+++||+
T Consensus 66 ~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~ 145 (232)
T 3ntv_A 66 LIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDM 145 (232)
T ss_dssp HHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEE
T ss_pred HHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccE
Confidence 3344567899999999999999999854 67999999999999999998864 335899999999764 3 22688999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|++... ..+...+++++.++|||||++++.+...
T Consensus 146 V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 146 IFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp EEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred EEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 997643 4567889999999999999998875443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=126.29 Aligned_cols=108 Identities=22% Similarity=0.363 Sum_probs=85.9
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-CCCCCCee
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-TFSEDSVD 122 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~D 122 (485)
++.+...++.+|||+|||+|.++..+++. + .+|+|+|+|+.+++.++++....++++++++|+.+... ....++||
T Consensus 66 l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (227)
T 1g8a_A 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred HHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCce
Confidence 44455677889999999999999999987 3 69999999999999998887655789999999987321 11246899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+|++... .++ ....++.++.++|+|||.+++.
T Consensus 146 ~v~~~~~---~~~-~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 146 VIFEDVA---QPT-QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEECCC---STT-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCC---CHh-HHHHHHHHHHHhcCCCCEEEEE
Confidence 9997643 222 1345699999999999999997
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-15 Score=127.29 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=91.7
Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-C-C
Q 043471 270 ETTKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-T-Y 345 (485)
Q Consensus 270 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~-~ 345 (485)
.....+++.+. ++++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...+.++++.++|+.+. + .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 26 RLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA 104 (171)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhh
Confidence 34444555543 336789999999999999999987 56799999999999999998764333789999998763 2 1
Q ss_pred --CCCCccEEEEcccccccCCHHHHHHHHH--hcCCCCcEEEEEeccc
Q 043471 346 --PENSFDVIYSRDTILHIQDKPALFKSFF--KWLKPGGTVLISDYCK 389 (485)
Q Consensus 346 --~~~~fD~i~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~~ 389 (485)
..++||+|++..+++ .+...+++.+. ++|+|||.+++.....
T Consensus 105 ~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 105 KAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred hccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 124799999998765 66777888888 9999999999986544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-14 Score=136.04 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=94.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
..+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. ++..+++++.+|+.+++++ ++|
T Consensus 40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~ 117 (348)
T 2y1w_A 40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQV 117 (348)
T ss_dssp HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCE
T ss_pred HHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Cce
Confidence 45666666778899999999999999999987445999999996 8899988875 4446899999999998765 689
Q ss_pred cEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 351 DVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 351 D~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|+|++..+++|+. +....+.+++++|||||.+++..
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999998888874 56788899999999999998653
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=132.94 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=114.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+......+|||||||+|.++..++++. .+++..|. |.+++.|+++... .++++++.+|+.+. + ..
T Consensus 169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~--~--~~ 243 (353)
T 4a6d_A 169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKD--P--LP 243 (353)
T ss_dssp HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTS--C--CC
T ss_pred HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccC--C--CC
Confidence 456666666677899999999999999999984 46777886 8899999987643 35899999998763 2 23
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc----------CCCCCCCCChhHHHHHhhh
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR----------KHNPTHYREPRFYSKVFKE 189 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 189 (485)
.+|+|++..++|+++++...++|+++++.|+|||.++|.+........... ....-.-++.+.|++++++
T Consensus 244 ~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~ 323 (353)
T 4a6d_A 244 EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSS 323 (353)
T ss_dssp CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHH
T ss_pred CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 589999999999999988889999999999999999999876543321110 0111122478889999999
Q ss_pred cceecCC
Q 043471 190 CQIQDAS 196 (485)
Q Consensus 190 ~~~~~~~ 196 (485)
+||+...
T Consensus 324 AGf~~v~ 330 (353)
T 4a6d_A 324 AGFRDFQ 330 (353)
T ss_dssp HTCEEEE
T ss_pred CCCceEE
Confidence 9996543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-14 Score=137.58 Aligned_cols=111 Identities=23% Similarity=0.271 Sum_probs=93.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.++......++.+|||||||+|.++..+++. +. +|+|+|+| .|++.|++++. ++..+++++.+|+.+++++ ++|
T Consensus 54 ~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~ 130 (376)
T 3r0q_C 54 AVFQNKHHFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKV 130 (376)
T ss_dssp HHHTTTTTTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCE
T ss_pred HHHhccccCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Ccc
Confidence 3444456678899999999999999999988 55 99999999 99999999876 4445699999999998876 899
Q ss_pred cEEEEccccccc---CCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 351 DVIYSRDTILHI---QDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 351 D~i~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|+|++..+.+++ .++..+++++.++|||||.+++...
T Consensus 131 D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 131 DVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp EEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred eEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 999996655554 4688899999999999999987643
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-14 Score=141.70 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=108.7
Q ss_pred HHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+++.++ ..++.+|||||||+|..+..+++++ .+++++|+ +.+++.|++. ++++++.+|+.+ ++ +.
T Consensus 198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~--~~-- 267 (372)
T 1fp1_D 198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----SGIEHVGGDMFA-SV--PQ-- 267 (372)
T ss_dssp HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-CC--CC--
T ss_pred HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----CCCEEEeCCccc-CC--CC--
Confidence 45566665 4567899999999999999999985 47888899 9998877652 579999999976 33 33
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc------c---cC----CCCCCCCChhHHHHHh
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS------K---RK----HNPTHYREPRFYSKVF 187 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~---~~----~~~~~~~~~~~~~~~~ 187 (485)
||+|++..++||++++....++++++++|+|||.+++.+......... . +. ......++.+.|..++
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll 347 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS 347 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHH
Confidence 999999999999998777799999999999999999987654332211 0 00 0012234788899999
Q ss_pred hhcceecC
Q 043471 188 KECQIQDA 195 (485)
Q Consensus 188 ~~~~~~~~ 195 (485)
+++||...
T Consensus 348 ~~aGf~~~ 355 (372)
T 1fp1_D 348 KLSGFSKF 355 (372)
T ss_dssp HHTTCSEE
T ss_pred HHCCCceE
Confidence 99998543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=133.14 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=87.7
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC-CCC
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP-DLT 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~-~~~ 115 (485)
..++..+ ...++.+|||||||+|..+..+++. +.+|+|+|+|+++++.|+++.. ..++++++++|+.+. +..
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL 131 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence 3444443 4456789999999999999999987 6799999999999999998753 224799999998652 111
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
...++||+|++... ......+++++.++|||||+|++.+...
T Consensus 132 ~~~~~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 132 GECPAFDLIFIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp CSCCCCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred CCCCCeEEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 12358999998542 2235689999999999999999976644
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=123.18 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=99.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCC-CccEEEEc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPEN-SFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~-~fD~i~~~ 356 (485)
++++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++. ++..++++..+|..+. ++.+ +||+|+..
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~~~~D~Ivia 91 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEETDQVSVITIA 91 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGGGCCCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccCcCCCEEEEc
Confidence 4578899999999999999999874 3589999999999999999986 4445799999998542 2333 69999876
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
++-- .-...++.+....|+|+|+++++-. .....+++.|.+.||.+++.
T Consensus 92 G~Gg--~~i~~Il~~~~~~L~~~~~lVlq~~----------------------~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 92 GMGG--RLIARILEEGLGKLANVERLILQPN----------------------NREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EECH--HHHHHHHHHTGGGCTTCCEEEEEES----------------------SCHHHHHHHHHHTTEEEEEE
T ss_pred CCCh--HHHHHHHHHHHHHhCCCCEEEEECC----------------------CCHHHHHHHHHHCCCEEEEE
Confidence 5422 1257789999999999999999821 24678899999999998765
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=134.28 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-----CCCCeEEEEccCCCCCC--CCCCccE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-----LKCSVEFEVADCTKKTY--PENSFDV 352 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-----~~~~i~~~~~d~~~~~~--~~~~fD~ 352 (485)
.+++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. ...+++++.+|+.+.+. ++++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 3566899999999999999999875 46999999999999999998631 23579999999876543 3688999
Q ss_pred EEEcccccccCCH----HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 353 IYSRDTILHIQDK----PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 353 i~~~~~~~~~~~~----~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
|++.....+.+.. .+++++++++|||||++++...... . .......+.+.++++||..+.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~-------~---------~~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIW-------L---------DLELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTT-------T---------CHHHHHHHHHHHHHHTCSEEE
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcc-------c---------chHHHHHHHHHHHhCCCCcEE
Confidence 9997655443322 6899999999999999999843210 0 011356788999999999876
Q ss_pred Eee
Q 043471 429 AED 431 (485)
Q Consensus 429 ~~~ 431 (485)
...
T Consensus 237 ~~~ 239 (304)
T 3bwc_A 237 YAL 239 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-14 Score=131.22 Aligned_cols=133 Identities=18% Similarity=0.295 Sum_probs=101.9
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~ 117 (485)
....+++.+. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ..++++++++|+.+. ++
T Consensus 98 l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~---~~ 173 (276)
T 2b3t_A 98 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---LA 173 (276)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---GT
T ss_pred HHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh---cc
Confidence 3345566665 56789999999999999999976 6799999999999999998753 224799999998762 24
Q ss_pred CCCeeEEEhhh-------------hhhccCh----------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCC
Q 043471 118 EDSVDMMFSNW-------------LLMYLSD----------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNP 174 (485)
Q Consensus 118 ~~~~D~v~~~~-------------~~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 174 (485)
+++||+|+++- +++|.+. .....+++++.++|+|||++++...
T Consensus 174 ~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-------------- 239 (276)
T 2b3t_A 174 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-------------- 239 (276)
T ss_dssp TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC--------------
T ss_pred cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--------------
Confidence 67899999972 3334331 2367899999999999999999522
Q ss_pred CCCCChhHHHHHhhhcceec
Q 043471 175 THYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (485)
....+.+.+.++++||..
T Consensus 240 --~~~~~~~~~~l~~~Gf~~ 257 (276)
T 2b3t_A 240 --WQQGEAVRQAFILAGYHD 257 (276)
T ss_dssp --SSCHHHHHHHHHHTTCTT
T ss_pred --chHHHHHHHHHHHCCCcE
Confidence 124677888899988854
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-14 Score=132.23 Aligned_cols=113 Identities=18% Similarity=0.269 Sum_probs=98.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTKK 343 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~~ 343 (485)
.....++..+.+.++.+|||+|||+|.++..+++.. +.+++++|+++.+++.|++++... ..++++..+|+.+.
T Consensus 86 ~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 86 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 345677888888999999999999999999999864 569999999999999999987532 45899999999988
Q ss_pred CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++++++||+|++ +++++..+++++.++|+|||++++...
T Consensus 166 ~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred CCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 877789999998 456788999999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-15 Score=133.90 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=83.9
Q ss_pred hhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCC
Q 043471 42 ERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFS 117 (485)
Q Consensus 42 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~ 117 (485)
....+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+ +++++++|+.+ +++
T Consensus 17 ~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~ 93 (215)
T 4dzr_A 17 LVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIE---WLI 93 (215)
T ss_dssp HHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHH---HHH
T ss_pred HHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHh---hhh
Confidence 44556666655 67889999999999999999998 5599999999999999998765433 68899999876 234
Q ss_pred C-----CCeeEEEhhhhh------hccChHH------------------HHHHHHHHHhhcccCcE-EEEEeccCCCCCc
Q 043471 118 E-----DSVDMMFSNWLL------MYLSDKE------------------VEKLAERMVKWLKVGGY-IFFRESCFHQSGD 167 (485)
Q Consensus 118 ~-----~~~D~v~~~~~~------~~~~~~~------------------~~~~l~~~~~~L~pgG~-l~~~~~~~~~~~~ 167 (485)
+ ++||+|+++-.+ +++.... +..+++++.++|+|||+ +++. ...
T Consensus 94 ~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~----- 167 (215)
T 4dzr_A 94 ERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE-VGH----- 167 (215)
T ss_dssp HHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE-CTT-----
T ss_pred hhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE-ECC-----
Confidence 4 899999996433 2222211 16889999999999999 5553 321
Q ss_pred cccCCCCCCCCChhHHHHHhh--hcceec
Q 043471 168 SKRKHNPTHYREPRFYSKVFK--ECQIQD 194 (485)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 194 (485)
...+.+...+. +.||..
T Consensus 168 ----------~~~~~~~~~l~~~~~gf~~ 186 (215)
T 4dzr_A 168 ----------NQADEVARLFAPWRERGFR 186 (215)
T ss_dssp ----------SCHHHHHHHTGGGGGGTEE
T ss_pred ----------ccHHHHHHHHHHhhcCCce
Confidence 24567788888 778744
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.1e-15 Score=151.22 Aligned_cols=110 Identities=15% Similarity=0.167 Sum_probs=91.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.++.+|||||||.|.++..||+.|++|+|||+|+.+++.|+......+ +++|.+++++++.-.+++++||+|+|+.++
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 356799999999999999999999999999999999999998765433 799999999874224567899999999999
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+|++++.....+..+.+.|+++|..++.....
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 99988653445567888899999877765543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-13 Score=124.94 Aligned_cols=124 Identities=6% Similarity=0.005 Sum_probs=100.1
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
++++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++. ++..++++..+|..+...++.+||+|++.+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag 98 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG 98 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence 5678899999999999999999874 3489999999999999999986 444579999999987654444699998755
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+-- .-...++.+..+.|+++|+|+++- ......+++.|.+.||.+++
T Consensus 99 mGg--~lI~~IL~~~~~~L~~~~~lIlq~----------------------~~~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 99 MGG--TLIRTILEEGAAKLAGVTKLILQP----------------------NIAAWQLREWSEQNNWLITS 145 (244)
T ss_dssp ECH--HHHHHHHHHTGGGGTTCCEEEEEE----------------------SSCHHHHHHHHHHHTEEEEE
T ss_pred Cch--HHHHHHHHHHHHHhCCCCEEEEEc----------------------CCChHHHHHHHHHCCCEEEE
Confidence 432 235678889999999999999982 12367889999999999754
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-15 Score=140.60 Aligned_cols=136 Identities=19% Similarity=0.133 Sum_probs=105.0
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .+++++++|+.+.+ ++++||+|++..+++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcC
Confidence 6789999999999999999987 6899999999999999999886444 47999999998876 567999999999999
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEE
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDII 428 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 428 (485)
+..+....+.+++++|+|||.+++........... ..-....+.+.+..++...|...+.
T Consensus 156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~~~~~--------~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 156 GPDYATAETFDIRTMMSPDGFEIFRLSKKITNNIV--------YFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHCSCEE--------EEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred CcchhhhHHHHHHhhcCCcceeHHHHHHhhCCceE--------EECCCCCCHHHHHHHhccCCCEEEE
Confidence 98877778889999999999966552211000000 0001234567788888887766554
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=125.95 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=82.2
Q ss_pred hhhHHHhccCC---CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC
Q 043471 41 EERPEVLSLLP---PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL 114 (485)
Q Consensus 41 ~~~~~~~~~~~---~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~ 114 (485)
.....+++.+. ..+|.+|||+|||+|..+..+++. ..+|+|+|+|+.|++...+......|+.++++|+..+..
T Consensus 60 kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~ 139 (232)
T 3id6_C 60 KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQS 139 (232)
T ss_dssp HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGG
T ss_pred HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchh
Confidence 33455655554 778999999999999999999986 349999999998864333222112589999999986421
Q ss_pred -CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 115 -TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 115 -~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
....++||+|++..+. ++. ...+...+.+.|||||.++++.
T Consensus 140 ~~~~~~~~D~I~~d~a~---~~~-~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 140 YKSVVENVDVLYVDIAQ---PDQ-TDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp TTTTCCCEEEEEECCCC---TTH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccccceEEEEecCCC---hhH-HHHHHHHHHHhCCCCeEEEEEE
Confidence 1224689999998543 331 2334556666999999999973
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.6e-14 Score=137.62 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
.....+++.+...++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+..+.+..+|+.+.+ ++
T Consensus 183 ~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~--~~ 260 (343)
T 2pjd_A 183 VGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV--KG 260 (343)
T ss_dssp HHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC--CS
T ss_pred HHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc--cC
Confidence 456677777766667899999999999999999885 369999999999999999998655555778888887653 67
Q ss_pred CccEEEEcccccc-----cCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 349 SFDVIYSRDTILH-----IQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 349 ~fD~i~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+||+|+++.++++ ..+...+++++.++|||||.+++...
T Consensus 261 ~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 261 RFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp CEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 8999999999875 24578899999999999999999854
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=132.28 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++....+ .+++.++|+.+. +++++||+|+++...
T Consensus 118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~---~~~~~fD~Vv~n~~~ 194 (254)
T 2nxc_A 118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGPFDLLVANLYA 194 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCCEEEEEEECCH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc---CcCCCCCEEEECCcH
Confidence 3567899999999999999999998899999999999999998753212 289999998762 346789999997544
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
++ ...++.++.++|+|||+++++..... ..+.+...+++.||..
T Consensus 195 ~~-----~~~~l~~~~~~LkpgG~lils~~~~~---------------~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 195 EL-----HAALAPRYREALVPGGRALLTGILKD---------------RAPLVREAMAGAGFRP 238 (254)
T ss_dssp HH-----HHHHHHHHHHHEEEEEEEEEEEEEGG---------------GHHHHHHHHHHTTCEE
T ss_pred HH-----HHHHHHHHHHHcCCCCEEEEEeeccC---------------CHHHHHHHHHHCCCEE
Confidence 32 45799999999999999999765321 3567888899988854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=131.46 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=91.2
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHh--hcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAK--KAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
.......+...+...++.+|||||||+|..+..+++ .+.+|+|+|+|+.+++.|+++... .++++++++|+.+.
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 134 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ- 134 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC-
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH-
Confidence 344444444444556788999999999999999998 467999999999999999987532 24899999999763
Q ss_pred CC-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 114 LT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 114 ~~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++ ..+++||+|++... ... ...+++++.++|+|||++++.+...
T Consensus 135 ~~~~~~~~fD~V~~~~~---~~~--~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 135 FENVNDKVYDMIFIDAA---KAQ--SKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp HHHHTTSCEEEEEEETT---SSS--HHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred HHhhccCCccEEEEcCc---HHH--HHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 22 23689999997643 222 5679999999999999998865543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-14 Score=128.31 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=87.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-CC----CCCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-YP----ENSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~~----~~~f 350 (485)
..++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++. ++..+++++.+|+.+. + ++ .++|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 3467799999999999999999864 5799999999999999999876 4445799999997542 2 11 2689
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|++....++..+...+++.+ ++|||||.+++.+..
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999988777776666778888 999999999998654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.5e-14 Score=130.72 Aligned_cols=112 Identities=16% Similarity=0.115 Sum_probs=88.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeC-ChHHHHHHHHHc-----CCC-------CCeEEEEeecc
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDF-IDSVIKKNEEVN-----GHF-------ENVKFMCADVT 110 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~-s~~~~~~a~~~~-----~~~-------~~~~~~~~d~~ 110 (485)
.+++.....++.+|||||||+|.++..+++.+. +|+|+|+ |+.+++.|+++. ... +++++...++.
T Consensus 70 ~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~ 149 (281)
T 3bzb_A 70 TLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWG 149 (281)
T ss_dssp HHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTT
T ss_pred HHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCC
Confidence 344444445778999999999999999999877 8999999 899999999876 321 36888877765
Q ss_pred CCCCCC----CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcc---c--CcEEEEE
Q 043471 111 SPDLTF----SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLK---V--GGYIFFR 158 (485)
Q Consensus 111 ~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~---p--gG~l~~~ 158 (485)
+....+ ++++||+|++..+++|.++ ...+++.+.++|+ | ||.+++.
T Consensus 150 ~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp SCTHHHHHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CccHHHHhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 521111 3578999999999999776 6799999999999 9 9988774
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.7e-14 Score=133.59 Aligned_cols=108 Identities=26% Similarity=0.324 Sum_probs=89.2
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEE
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIY 354 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~ 354 (485)
+.+...++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++. ++..+++++.+|+.++++++++||+|+
T Consensus 32 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Iv 110 (328)
T 1g6q_1 32 QNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIII 110 (328)
T ss_dssp HHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEE
T ss_pred hhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEE
Confidence 333445678999999999999999998733499999999 59999998875 444679999999999888778999999
Q ss_pred Ecccc---cccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 355 SRDTI---LHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 355 ~~~~~---~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+..+. .+...+..+++++.++|||||+++..
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 97543 34467889999999999999999743
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=128.52 Aligned_cols=112 Identities=16% Similarity=0.236 Sum_probs=91.4
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
.+.....+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++.+++.|+++... ..+++++.+|+. .+
T Consensus 76 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~---~~ 152 (235)
T 1jg1_A 76 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS---KG 152 (235)
T ss_dssp CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG---GC
T ss_pred cHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc---cC
Confidence 34455677777778888999999999999999999986 8999999999999999987532 247999999973 23
Q ss_pred CCC-CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSE-DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~-~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++ ..||+|++..+++++.+ ++.+.|+|||.+++....
T Consensus 153 ~~~~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 153 FPPKAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred CCCCCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEec
Confidence 333 35999999998888874 578899999999997653
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=127.66 Aligned_cols=133 Identities=20% Similarity=0.177 Sum_probs=104.3
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~ 111 (485)
........+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++... .+++++.++|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 80 TYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEE 159 (258)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGG
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhh
Confidence 33444457788888888999999999999999999988 57999999999999999987522 3689999999987
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
.++++++||+|++. .++ ...+++++.++|+|||.+++..+... ........+++.|
T Consensus 160 --~~~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~---------------~~~~~~~~l~~~g 215 (258)
T 2pwy_A 160 --AELEEAAYDGVALD-----LME--PWKVLEKAALALKPDRFLVAYLPNIT---------------QVLELVRAAEAHP 215 (258)
T ss_dssp --CCCCTTCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEESCHH---------------HHHHHHHHHTTTT
T ss_pred --cCCCCCCcCEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeCCHH---------------HHHHHHHHHHHCC
Confidence 44567899999983 344 34799999999999999999765321 2234555666777
Q ss_pred eec
Q 043471 192 IQD 194 (485)
Q Consensus 192 ~~~ 194 (485)
|..
T Consensus 216 f~~ 218 (258)
T 2pwy_A 216 FRL 218 (258)
T ss_dssp EEE
T ss_pred Cce
Confidence 754
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=124.65 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=92.1
Q ss_pred HHHHHHHHcC--CCCCCEEEEECCCCChhHHHHhhcCC--CEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEccC
Q 043471 271 TTKEFVAKLD--LKPGQKVLDVGCGIGGGDFYMADKFD--VHVVGIDLSINMISFALERAIGL------KCSVEFEVADC 340 (485)
Q Consensus 271 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d~ 340 (485)
....+++.+. +.++.+|||+|||+|..+..+++..+ .+|+++|+|+.+++.+++++... ..++++..+|+
T Consensus 63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 4446666664 77889999999999999999998753 69999999999999999887532 23799999998
Q ss_pred CCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 341 ~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
...+.++++||+|++..+++++. +++.++|||||++++...
T Consensus 143 ~~~~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 143 RMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp GGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred ccCcccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEe
Confidence 87655567899999999887764 688999999999999854
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.2e-14 Score=129.01 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=90.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhc--C-CCEEEEEeCCHHHHHHHHHHhcCC---CC--C----------
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADK--F-DVHVVGIDLSINMISFALERAIGL---KC--S---------- 332 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~~v~g~D~s~~~~~~a~~~~~~~---~~--~---------- 332 (485)
.+..+++.+...++.+|||+|||+|.++..+++. . +.+|+|+|+|+.+++.|++++... +. +
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER 118 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhh
Confidence 3444555554446779999999999999999886 3 569999999999999999887643 11 2
Q ss_pred ---------------eE-------------EEEccCCCCCC-----CCCCccEEEEcccccccCC---------HHHHHH
Q 043471 333 ---------------VE-------------FEVADCTKKTY-----PENSFDVIYSRDTILHIQD---------KPALFK 370 (485)
Q Consensus 333 ---------------i~-------------~~~~d~~~~~~-----~~~~fD~i~~~~~~~~~~~---------~~~~l~ 370 (485)
++ +.++|+.+... ...+||+|+++..+.+..+ ...+++
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~ 198 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 198 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence 66 99999877421 3458999999987766543 348999
Q ss_pred HHHhcCCCCcEEEEEec
Q 043471 371 SFFKWLKPGGTVLISDY 387 (485)
Q Consensus 371 ~~~~~LkpgG~l~i~~~ 387 (485)
++.++|+|||++++...
T Consensus 199 ~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 199 SLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHSCTTCEEEEEES
T ss_pred HHHHhcCCCcEEEEeCc
Confidence 99999999999999643
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-14 Score=130.03 Aligned_cols=116 Identities=17% Similarity=0.159 Sum_probs=88.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCCC---C---C------------
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGHF---E---N------------ 101 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~~---~---~------------ 101 (485)
..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.... + +
T Consensus 41 ~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 41 QRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 44555555556789999999999999999887 569999999999999999765432 1 1
Q ss_pred -------------eE-------------EEEeeccCCCCCC----CCCCeeEEEhhhhhhccCh-------HHHHHHHHH
Q 043471 102 -------------VK-------------FMCADVTSPDLTF----SEDSVDMMFSNWLLMYLSD-------KEVEKLAER 144 (485)
Q Consensus 102 -------------~~-------------~~~~d~~~~~~~~----~~~~~D~v~~~~~~~~~~~-------~~~~~~l~~ 144 (485)
++ ++++|+.+. .+. ..++||+|+|+..+.+... .....++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~ 199 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDP-RALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS 199 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCG-GGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccc-cccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH
Confidence 66 999998762 111 3348999999866554432 446789999
Q ss_pred HHhhcccCcEEEEEec
Q 043471 145 MVKWLKVGGYIFFRES 160 (485)
Q Consensus 145 ~~~~L~pgG~l~~~~~ 160 (485)
+.++|+|||++++...
T Consensus 200 ~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 200 LASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHSCTTCEEEEEES
T ss_pred HHHhcCCCcEEEEeCc
Confidence 9999999999999543
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.1e-14 Score=123.56 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=89.7
Q ss_pred HHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----
Q 043471 272 TKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---- 344 (485)
Q Consensus 272 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---- 344 (485)
...+++.+. +.++.+|||+|||+|.++..+++.+ +.+++|+|+++ +++. .++++..+|+.+.+
T Consensus 10 l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---------~~~~~~~~d~~~~~~~~~ 79 (180)
T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI---------VGVDFLQGDFRDELVMKA 79 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------TTEEEEESCTTSHHHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------CcEEEEEcccccchhhhh
Confidence 445566654 6788899999999999999999885 47999999999 7532 37899999998876
Q ss_pred ----CCCCCccEEEEcccccccCCH-----------HHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 ----YPENSFDVIYSRDTILHIQDK-----------PALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 ----~~~~~fD~i~~~~~~~~~~~~-----------~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++++||+|++..++++..+. ..+++++.++|+|||.+++..+.
T Consensus 80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 667899999999998887765 78999999999999999998653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=126.89 Aligned_cols=112 Identities=23% Similarity=0.347 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCC-
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPE- 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~- 347 (485)
.....+++.+.+.++.+|||+|||+|.++..+++..+.+|+++|+++.+++.|++++...+ .++++..+|+ ..++++
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-~~~~~~~ 156 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG-SKGFPPK 156 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG-GGCCGGG
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCc-ccCCCCC
Confidence 4566777888888999999999999999999998854799999999999999999876433 3689999997 334444
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+||+|++..+++++. +++.++|||||++++....
T Consensus 157 ~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 157 APYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp CCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECS
T ss_pred CCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEec
Confidence 3599999999998876 4789999999999998653
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-14 Score=139.99 Aligned_cols=118 Identities=19% Similarity=0.240 Sum_probs=91.9
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cC-cEEEEeCChHHHHHH-------HHHcC--C--CCCeEEEE
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AG-HVIALDFIDSVIKKN-------EEVNG--H--FENVKFMC 106 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a-------~~~~~--~--~~~~~~~~ 106 (485)
......+++.+...++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.| ++++. . ..++++++
T Consensus 228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~ 307 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL 307 (433)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEE
Confidence 455677888888888999999999999999999986 43 799999999999888 66542 1 25899998
Q ss_pred eeccCCCCCC--CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 107 ADVTSPDLTF--SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 107 ~d~~~~~~~~--~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|......++ ..++||+|+++.++ +.++ ...+++++.++|||||.+++.+.
T Consensus 308 gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d--~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 308 KKSFVDNNRVAELIPQCDVILVNNFL-FDED--LNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp SSCSTTCHHHHHHGGGCSEEEECCTT-CCHH--HHHHHHHHHTTCCTTCEEEESSC
T ss_pred cCccccccccccccCCCCEEEEeCcc-cccc--HHHHHHHHHHhCCCCeEEEEeec
Confidence 8644211112 24689999987665 3333 66889999999999999999654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.3e-13 Score=123.98 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~ 347 (485)
.....++..+.+.++.+|||+|||+|.++..+++. +.+++++|+++.+++.|+++... ...++++..+|+.+..+++
T Consensus 78 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 78 KDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred hhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence 34457778888889999999999999999999988 78999999999999999998753 3357999999998754356
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++||+|++ +.+++..+++++.++|+|||++++...
T Consensus 157 ~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~ 191 (248)
T 2yvl_A 157 GIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLP 191 (248)
T ss_dssp TCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred CcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 78999998 456788999999999999999999854
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-14 Score=136.65 Aligned_cols=115 Identities=20% Similarity=0.219 Sum_probs=93.4
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~ 118 (485)
..+.+++.+....+.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.... ..++++.+|+... .+
T Consensus 184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~----~~ 259 (343)
T 2pjd_A 184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSE----VK 259 (343)
T ss_dssp HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTT----CC
T ss_pred HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEcccccc----cc
Confidence 35667777766667899999999999999999986 48999999999999999875322 2467888888652 36
Q ss_pred CCeeEEEhhhhhhcc---ChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYL---SDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++||+|+++..+|+. ......++++++.++|+|||.+++...
T Consensus 260 ~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 260 GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 799999999888763 233467999999999999999999754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=128.61 Aligned_cols=96 Identities=25% Similarity=0.354 Sum_probs=83.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. +++.+.++|+.. +++++++||+|+++.+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~--~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHR--LPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTS--CSBCTTCEEEEEEESCC
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhh--CCCCCCceeEEEEeCCh
Confidence 46789999999999999999987 779999999999999999875 578999999987 66778899999986542
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
..++++.++|+|||.+++..+..
T Consensus 159 ---------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ---------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ---------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ---------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 35789999999999999987654
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.9e-14 Score=124.53 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=86.6
Q ss_pred hhHHHhccCCCC---CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCC
Q 043471 42 ERPEVLSLLPPY---EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDL 114 (485)
Q Consensus 42 ~~~~~~~~~~~~---~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~ 114 (485)
..+.+++.+... ++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.|+++... ..+++++++|+.+..
T Consensus 50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~- 128 (207)
T 1jsx_A 50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP- 128 (207)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-
T ss_pred HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC-
Confidence 344555544322 4789999999999999999987 67999999999999999986532 246999999998742
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.++||+|+++.. .+ ...+++++.++|+|||.+++..
T Consensus 129 --~~~~~D~i~~~~~----~~--~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 129 --SEPPFDGVISRAF----AS--LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --CCSCEEEEECSCS----SS--HHHHHHHHTTSEEEEEEEEEEE
T ss_pred --ccCCcCEEEEecc----CC--HHHHHHHHHHhcCCCcEEEEEe
Confidence 4578999998642 33 5689999999999999999963
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=130.37 Aligned_cols=139 Identities=21% Similarity=0.169 Sum_probs=104.2
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD 351 (485)
+...+...++.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.+++++...+ .+++++++|+..++..+++||
T Consensus 110 ~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred HHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCC
Confidence 3445577889999999999999999999875 3699999999999999999886433 279999999988754457899
Q ss_pred EEEEcc------cccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCC
Q 043471 352 VIYSRD------TILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409 (485)
Q Consensus 352 ~i~~~~------~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (485)
+|++.. ++.+.++ ...+|+++.++|||||++++++..... .
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~-----------------~ 252 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP-----------------E 252 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG-----------------G
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCh-----------------H
Confidence 999842 2332222 158899999999999999998643211 1
Q ss_pred CCHHHHHHHHHhCCCeEEEEe
Q 043471 410 HDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 410 ~~~~~~~~~l~~aGf~~~~~~ 430 (485)
.....+...+++.||+.+.+.
T Consensus 253 Ene~~v~~~l~~~~~~~~~~~ 273 (315)
T 1ixk_A 253 ENEFVIQWALDNFDVELLPLK 273 (315)
T ss_dssp GTHHHHHHHHHHSSEEEECCC
T ss_pred HhHHHHHHHHhcCCCEEecCC
Confidence 123456777888898876543
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=135.41 Aligned_cols=134 Identities=14% Similarity=0.229 Sum_probs=104.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
..++.+|||||||+|.++..++++ +.+|+++|+ +.+++.|++. ++++++.+|+.+ ++ + .||+|++..+
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~~--p--~~D~v~~~~~ 255 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-SI--P--NADAVLLKYI 255 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-CC--C--CCSEEEEESC
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-CC--C--CccEEEeehh
Confidence 345689999999999999999987 568999999 9999887652 469999999865 33 3 3999999999
Q ss_pred hhccChHHHHHHHHHHHhhccc---CcEEEEEeccCCCCCcc-----c----cC---CCCCCCCChhHHHHHhhhcceec
Q 043471 130 LMYLSDKEVEKLAERMVKWLKV---GGYIFFRESCFHQSGDS-----K----RK---HNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~-----~----~~---~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+||++++...+++++++++|+| ||++++.+......... . +. ......++.+.|.++++++||..
T Consensus 256 lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll~~aGf~~ 335 (352)
T 1fp2_A 256 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQH 335 (352)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCE
T ss_pred hccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHHHHCCCCe
Confidence 9999987677999999999999 99999988765432211 0 00 01122246788999999999854
Q ss_pred C
Q 043471 195 A 195 (485)
Q Consensus 195 ~ 195 (485)
.
T Consensus 336 ~ 336 (352)
T 1fp2_A 336 Y 336 (352)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=127.46 Aligned_cols=114 Identities=18% Similarity=0.342 Sum_probs=90.8
Q ss_pred HHHHHHc-CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-CCC
Q 043471 273 KEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-TYP 346 (485)
Q Consensus 273 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~~~ 346 (485)
..++..+ ...++.+|||||||+|..+..+++.+ +.+|+++|+|+.+++.|++++. ++..++++..+|+.+. +..
T Consensus 52 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 52 GQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESL 131 (248)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTC
T ss_pred HHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhc
Confidence 3344433 34567899999999999999999886 5799999999999999999886 4445799999998652 222
Q ss_pred --CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 347 --ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 347 --~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.++||+|++... ..+...+++++.++|||||.+++.+...
T Consensus 132 ~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 132 GECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp CSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred CCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 348999998653 3467789999999999999999986544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-14 Score=126.56 Aligned_cols=124 Identities=12% Similarity=0.119 Sum_probs=92.8
Q ss_pred CccChhhhHHHhccCC-CCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~ 110 (485)
.......+..+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++... .++++++++|+.
T Consensus 25 rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~ 104 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDAN 104 (187)
T ss_dssp CCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHH
Confidence 3344556666676664 3568899999999999999988875 5999999999999999987532 247999999987
Q ss_pred CCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHH--HhhcccCcEEEEEeccC
Q 043471 111 SPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERM--VKWLKVGGYIFFRESCF 162 (485)
Q Consensus 111 ~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~~~ 162 (485)
+.. +++++++||+|+++..++ ... ....++.+ .++|+|||.+++.....
T Consensus 105 ~~~~~~~~~~~~fD~i~~~~~~~-~~~--~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 105 RALEQFYEEKLQFDLVLLDPPYA-KQE--IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGG-GCC--HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HHHHHHHhcCCCCCEEEECCCCC-chh--HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 631 112267899999987644 232 34566666 88999999999976543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=128.77 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=83.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC-CCCCCeeEEE
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT-FSEDSVDMMF 125 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~-~~~~~~D~v~ 125 (485)
...++.+|||||||+|..++.++.. +.+|+|+|+|+.+++.|+++... ..+++++++|+++.... ..+++||+|+
T Consensus 77 ~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 77 LWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred ccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 3456889999999999999999987 57999999999999999987532 24799999999874321 1247999999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|..+ .+ ...+++.+.++|+|||++++..
T Consensus 157 s~a~----~~--~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 157 ARAV----AP--LCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp EESS----CC--HHHHHHHHGGGEEEEEEEEEEE
T ss_pred ECCc----CC--HHHHHHHHHHHcCCCeEEEEEe
Confidence 9653 33 5689999999999999988754
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-14 Score=141.99 Aligned_cols=112 Identities=18% Similarity=0.247 Sum_probs=91.8
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~ 118 (485)
.+.+++.+...++.+|||||||+|.++..+++.+. +|+|+|+|+ +++.|+++.. ..++++++.+|+.+.+ ++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--~~- 222 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--LP- 222 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CS-
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--cC-
Confidence 34566666666788999999999999999998854 999999998 9988887643 2257999999998843 33
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++||+|+++.+++|...+.....+.++.++|+|||.+++.
T Consensus 223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5899999998888887655677888999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=125.01 Aligned_cols=110 Identities=22% Similarity=0.275 Sum_probs=88.7
Q ss_pred hhHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC-------CCCeEEEEeec
Q 043471 42 ERPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH-------FENVKFMCADV 109 (485)
Q Consensus 42 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~~d~ 109 (485)
....+++.+. ..++.+|||||||+|..+..+++. + .+|+|+|+|+.+++.++++... .++++++++|+
T Consensus 63 ~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 63 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc
Confidence 3345666665 567889999999999999999987 4 5899999999999999886532 35899999999
Q ss_pred cCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 110 ~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.. .+..+++||+|++...++++. +++.++|+|||.+++....
T Consensus 143 ~~--~~~~~~~fD~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 143 RM--GYAEEAPYDAIHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp GG--CCGGGCCEEEEEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred cc--CcccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 76 333467899999988776664 4688999999999997553
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=124.82 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=92.1
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-CCC--
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-TYP-- 346 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~~~-- 346 (485)
..+...+...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.|++++.. ...++++..+|+.+. +..
T Consensus 44 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 123 (233)
T 2gpy_A 44 ESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLEL 123 (233)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTT
T ss_pred HHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhccc
Confidence 333344445577899999999999999999886 57999999999999999998763 335799999998774 322
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++||+|++.... .+...+++++.++|+|||++++.+..
T Consensus 124 ~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 124 YPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp SCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 4789999997764 37889999999999999999998654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=125.38 Aligned_cols=111 Identities=22% Similarity=0.267 Sum_probs=92.3
Q ss_pred HHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcCC------CEEEEEeCCHHHHHHHHHHhcCC------CCCeEEE
Q 043471 271 TTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFD------VHVVGIDLSINMISFALERAIGL------KCSVEFE 336 (485)
Q Consensus 271 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~ 336 (485)
....+++.+ .+.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++... ..++++.
T Consensus 66 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 66 MHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKII 145 (227)
T ss_dssp HHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEE
Confidence 444556666 477889999999999999999998754 59999999999999999987633 2479999
Q ss_pred EccCCCCC----CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 337 VADCTKKT----YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 337 ~~d~~~~~----~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.+|+.+.. ...++||+|++..+++++ ++++.++|||||++++...
T Consensus 146 ~~d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 146 HKNIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ECCGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred ECChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 99998754 456789999999998876 3788999999999999854
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=127.85 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=87.9
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC---CC---CeEEEEeeccCCC----
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH---FE---NVKFMCADVTSPD---- 113 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~---~~---~~~~~~~d~~~~~---- 113 (485)
+...+...++.+|||+|||+|.+++.++++. .+|+|+|+++.+++.|+++... .+ +++++++|+.+..
T Consensus 28 L~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~ 107 (260)
T 2ozv_A 28 LASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARV 107 (260)
T ss_dssp HHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHH
T ss_pred HHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhh
Confidence 3445556678899999999999999999984 6899999999999999998654 22 5999999998741
Q ss_pred -CCCCCCCeeEEEhhhhhh----------------ccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 114 -LTFSEDSVDMMFSNWLLM----------------YLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 114 -~~~~~~~~D~v~~~~~~~----------------~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
..+++++||+|+++-.+. |........+++.+.++|+|||.+++..
T Consensus 108 ~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 108 EAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 024578999999973221 1112226789999999999999999853
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-14 Score=129.08 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=89.1
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP 112 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~ 112 (485)
.......+...+...++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|+++.. ..++++++++|+.+.
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 122 (221)
T 3u81_A 43 GDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDL 122 (221)
T ss_dssp CHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHH
Confidence 3333333333344456789999999999999999984 6799999999999999998643 223699999998552
Q ss_pred CCC-C----CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 113 DLT-F----SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 113 ~~~-~----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++ + ..++||+|++....++..+ ...++..+ ++|+|||++++.+..
T Consensus 123 -l~~~~~~~~~~~fD~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 123 -IPQLKKKYDVDTLDMVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp -GGGTTTTSCCCCCSEEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred -HHHHHHhcCCCceEEEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCC
Confidence 11 1 1268999999876666654 44677777 999999999996554
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=127.89 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=98.3
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~ 116 (485)
..+..+.+.+ .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.. ...+++++++|+.+.. .
T Consensus 114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~--~ 189 (278)
T 2frn_A 114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--G 189 (278)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--C
T ss_pred HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhc--c
Confidence 3445555553 3578999999999999999999987 59999999999999998643 2235999999998843 2
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhccee
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
+++||+|+++.. .. ...++.++.++|+|||++++.+...... ......+.+...+++.|+.
T Consensus 190 -~~~fD~Vi~~~p----~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~G~~ 250 (278)
T 2frn_A 190 -ENIADRILMGYV----VR--THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGYD 250 (278)
T ss_dssp -CSCEEEEEECCC----SS--GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTCE
T ss_pred -cCCccEEEECCc----hh--HHHHHHHHHHHCCCCeEEEEEEeecccc---------ccccHHHHHHHHHHHcCCe
Confidence 679999998632 12 2478999999999999999976653110 0011345667777777763
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=124.86 Aligned_cols=105 Identities=14% Similarity=0.163 Sum_probs=82.3
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCC---CeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE---NVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~~~~~ 119 (485)
.+...+ .++.+|||+|||+|.++..++.. +.+|+|+|+|+.|++.++++....+ ++.+ +|.... .+.+
T Consensus 42 ~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~---~~~~ 114 (200)
T 3fzg_A 42 YVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD---VYKG 114 (200)
T ss_dssp HHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH---HTTS
T ss_pred HHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc---CCCC
Confidence 334445 34779999999999999999776 6699999999999999999864322 4555 665432 3568
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+||+|++..++|++++ .+..+.++++.|+|||.++--
T Consensus 115 ~~DvVLa~k~LHlL~~--~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 115 TYDVVFLLKMLPVLKQ--QDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp EEEEEEEETCHHHHHH--TTCCHHHHHHTCEEEEEEEEE
T ss_pred CcChhhHhhHHHhhhh--hHHHHHHHHHHhCCCCEEEEe
Confidence 8999999999999943 567888999999999976553
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=132.89 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=86.2
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCC------CCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAG------IGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
+..+.+++.+. .++.+||||||| +|..+..++++ +.+|+|+|+|++|. ...++++|+++|+.+
T Consensus 204 ~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~d 275 (419)
T 3sso_A 204 PHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQND 275 (419)
T ss_dssp HHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTC
T ss_pred HHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccc
Confidence 45556666554 346899999999 78888777765 57999999999983 123689999999988
Q ss_pred CCCCCC------CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 112 PDLTFS------EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 112 ~~~~~~------~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++. +++||+|++..+ ++..+ ...+|++++++|||||++++.+...
T Consensus 276 --lpf~~~l~~~d~sFDlVisdgs-H~~~d--~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 276 --AEFLDRIARRYGPFDIVIDDGS-HINAH--VRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp --HHHHHHHHHHHCCEEEEEECSC-CCHHH--HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred --cchhhhhhcccCCccEEEECCc-ccchh--HHHHHHHHHHhcCCCeEEEEEeccc
Confidence 5555 689999998754 55554 6799999999999999999987763
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=125.37 Aligned_cols=111 Identities=20% Similarity=0.275 Sum_probs=92.4
Q ss_pred HHHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcCC-------CEEEEEeCCHHHHHHHHHHhcCC------CCCeE
Q 043471 270 ETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKFD-------VHVVGIDLSINMISFALERAIGL------KCSVE 334 (485)
Q Consensus 270 ~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~~v~g~D~s~~~~~~a~~~~~~~------~~~i~ 334 (485)
.....+++.+ .+.++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++... ..+++
T Consensus 69 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 148 (227)
T 1r18_A 69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148 (227)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceE
Confidence 4456677777 477889999999999999999998654 49999999999999999887532 24799
Q ss_pred EEEccCCCCCCCC-CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 335 FEVADCTKKTYPE-NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 335 ~~~~d~~~~~~~~-~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+..+|+.+ ++++ ++||+|++..+++++. +++.++|||||++++...
T Consensus 149 ~~~~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 149 IVEGDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEESCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred EEECCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 99999887 4444 7899999999998875 789999999999999854
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.1e-14 Score=128.94 Aligned_cols=109 Identities=11% Similarity=0.139 Sum_probs=85.0
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---C-CCeEEEEeeccCCCCCCCCCCe
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---F-ENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~-~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
..+..++.+|||||||+|..+..+++. +.+|+++|+|+++++.|+++... . ++++++++|+.+..-.+++++|
T Consensus 51 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~f 130 (221)
T 3dr5_A 51 TTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSY 130 (221)
T ss_dssp HSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCE
T ss_pred hhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCc
Confidence 334444569999999999999999986 57999999999999999987532 2 4799999998763112336899
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+|++... ... ...+++++.++|+|||++++.+..+
T Consensus 131 D~V~~d~~---~~~--~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 131 QLVFGQVS---PMD--LKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp EEEEECCC---TTT--HHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CeEEEcCc---HHH--HHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 99998642 222 5679999999999999999965543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.4e-13 Score=129.82 Aligned_cols=114 Identities=19% Similarity=0.277 Sum_probs=94.4
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC-----CCCeEEEEeecc
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH-----FENVKFMCADVT 110 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~ 110 (485)
.......++..+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++... ..+++++++|+.
T Consensus 84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~ 163 (280)
T 1i9g_A 84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence 3445567788888888999999999999999999986 57999999999999999987532 358999999998
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+ .++++++||+|++. .++ ...+++++.++|+|||.+++..++
T Consensus 164 ~--~~~~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 164 D--SELPDGSVDRAVLD-----MLA--PWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp G--CCCCTTCEEEEEEE-----SSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred h--cCCCCCceeEEEEC-----CcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 8 44567899999983 334 337999999999999999997654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=122.49 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-CCCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-TYPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~~~~~~fD~i~~~ 356 (485)
.++.+|||||||+|..+..+++.. +.+|+++|+|+.+++.|++++. +...++++..+|..+. +..++ ||+|++.
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~ 133 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD 133 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence 356799999999999999999876 5799999999999999998875 3334699999998653 43346 9999987
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.. ..+...+++++.++|||||.+++.+..
T Consensus 134 ~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 134 CD---VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp TT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred CC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 42 457889999999999999999987644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=126.40 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=92.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~ 112 (485)
.+......+...+...++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|+++... ..+++++++|+...
T Consensus 38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 117 (233)
T 2gpy_A 38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117 (233)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGS
T ss_pred cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence 44455555555555567889999999999999999988 67999999999999999987532 24799999998763
Q ss_pred CCCCC--CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 113 DLTFS--EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 113 ~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++.. +++||+|++..... + ...+++++.++|+|||.+++.+..
T Consensus 118 -~~~~~~~~~fD~I~~~~~~~---~--~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 118 -GEKLELYPLFDVLFIDAAKG---Q--YRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp -HHHHTTSCCEEEEEEEGGGS---C--HHHHHHHHGGGEEEEEEEEEETTT
T ss_pred -HHhcccCCCccEEEECCCHH---H--HHHHHHHHHHHcCCCeEEEEEcCC
Confidence 1222 57899999876543 2 568999999999999999997554
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-14 Score=129.36 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=93.7
Q ss_pred HHHhccCCCC-CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCeE-EEEeeccCCCC-CCCCC
Q 043471 44 PEVLSLLPPY-EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVK-FMCADVTSPDL-TFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~-~~~~d~~~~~~-~~~~~ 119 (485)
..+++.+... ++.+|||||||||.++..|++.|. +|+|+|+|++|++.+.+.. +++. +...++..... .++..
T Consensus 74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhhCCCC
Confidence 4666766654 577999999999999999999875 8999999999998865432 2332 23345544221 12345
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec-cCCCCCccccCC----CCC-CCCChhHHHHHhhhccee
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES-CFHQSGDSKRKH----NPT-HYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~-~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~ 193 (485)
+||+|++..+++++ ..++.+++++|+|||.+++... .+.......... ++. +....+.+..++..+||.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~ 225 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFS 225 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEE
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCE
Confidence 69999998777655 3699999999999999988621 121111110000 010 111345577778888984
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-14 Score=130.64 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=84.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh------cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK------AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTF 116 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~ 116 (485)
..+.+.+...++.+|||||||+|..+..|++. +.+|+|+|+|+.|++.|+.. .++++++++|+.+.. ++.
T Consensus 71 ~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---~~~v~~~~gD~~~~~~l~~ 147 (236)
T 2bm8_A 71 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTTFEH 147 (236)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGGGGG
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---CCceEEEECcchhHHHHHh
Confidence 33434444445789999999999999999986 67999999999999888732 268999999998731 132
Q ss_pred CC-CCeeEEEhhhhhhccChHHHHHHHHHHHh-hcccCcEEEEEec
Q 043471 117 SE-DSVDMMFSNWLLMYLSDKEVEKLAERMVK-WLKVGGYIFFRES 160 (485)
Q Consensus 117 ~~-~~~D~v~~~~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~~ 160 (485)
.. .+||+|++... |. + ...++.++.+ +|||||++++.+.
T Consensus 148 ~~~~~fD~I~~d~~--~~-~--~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 148 LREMAHPLIFIDNA--HA-N--TFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp GSSSCSSEEEEESS--CS-S--HHHHHHHHHHHTCCTTCEEEECSC
T ss_pred hccCCCCEEEECCc--hH-h--HHHHHHHHHHhhCCCCCEEEEEeC
Confidence 23 47999998654 43 3 5689999997 9999999999754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-13 Score=119.66 Aligned_cols=107 Identities=23% Similarity=0.328 Sum_probs=83.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCC---CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFD---VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-- 344 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-- 344 (485)
.+.++++.+. ++++.+|||+|||+|.++..++++.+ .+|+|+|+|+.+ . ..++++.++|+.+.+
T Consensus 9 kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~-~~~v~~~~~d~~~~~~~ 78 (201)
T 2plw_A 9 KLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------P-IPNVYFIQGEIGKDNMN 78 (201)
T ss_dssp HHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------C-CTTCEEEECCTTTTSSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------C-CCCceEEEccccchhhh
Confidence 3445566654 57888999999999999999998863 799999999832 1 236899999998876
Q ss_pred -----------------------CCCCCccEEEEcccccccC----CH-------HHHHHHHHhcCCCCcEEEEEec
Q 043471 345 -----------------------YPENSFDVIYSRDTILHIQ----DK-------PALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 -----------------------~~~~~fD~i~~~~~~~~~~----~~-------~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+++++||+|++..++++.. +. ..+++++.++|||||++++..+
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 79 NIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp CC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5667999999988776642 22 2378999999999999998653
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-13 Score=126.64 Aligned_cols=122 Identities=16% Similarity=0.261 Sum_probs=93.3
Q ss_pred CCCEEEEECCCCChhHHHHhhc---C--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC---CCCC-CCccEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADK---F--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK---TYPE-NSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~---~~~~-~~fD~i 353 (485)
++.+|||||||+|..+..+++. . +.+|+|+|+|+.+++.|+. ...+++++++|+.+. +... .+||+|
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~~~v~~~~gD~~~~~~l~~~~~~~fD~I 156 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLTTFEHLREMAHPLI 156 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSGGGGGGSSSCSSEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cCCceEEEECcchhHHHHHhhccCCCCEE
Confidence 4679999999999999999886 2 5799999999999988872 235899999999884 4333 479999
Q ss_pred EEcccccccCCHHHHHHHHHh-cCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhC--CCeEE
Q 043471 354 YSRDTILHIQDKPALFKSFFK-WLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDA--GFVDI 427 (485)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a--Gf~~~ 427 (485)
++... | .+...+++++.+ +|||||++++.+.. . .... .....+.+.+++. +|++.
T Consensus 157 ~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~--------~---~~~~-----~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 157 FIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMI--------P---YWYR-----YAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCH--------H---HHHH-----HCHHHHHHHHHTTTTTEEEE
T ss_pred EECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCc--------c---cccc-----cCHHHHHHHHHhCcccEEEc
Confidence 98665 4 378889999997 99999999998651 1 1111 1234677888887 57653
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.5e-14 Score=121.17 Aligned_cols=106 Identities=20% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-----
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT----- 115 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----- 115 (485)
.+++.+. ..++.+|||+|||+|.++..+++. +.+|+|+|+|+ +++. ++++++++|+.+ .+
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~--~~~~~~~ 80 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRD--ELVMKAL 80 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTS--HHHHHHH
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEccccc--chhhhhh
Confidence 3444444 456789999999999999999987 36999999999 7532 579999999987 33
Q ss_pred ---CCCCCeeEEEhhhhhhccChHH---H------HHHHHHHHhhcccCcEEEEEecc
Q 043471 116 ---FSEDSVDMMFSNWLLMYLSDKE---V------EKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ---~~~~~~D~v~~~~~~~~~~~~~---~------~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++++||+|+++.++++.+... . ..+++++.++|+|||.+++..+.
T Consensus 81 ~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5678999999988887775421 1 58999999999999999997654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=136.23 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=92.4
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+...++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++. ++..+++++.+|+.+++++ ++
T Consensus 147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~ 224 (480)
T 3b3j_A 147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQ 224 (480)
T ss_dssp HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SC
T ss_pred HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CC
Confidence 345566666667889999999999999999886446999999998 9999998876 4446899999999987765 68
Q ss_pred ccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 350 FDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 350 fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
||+|++..+++|+. +....+.+++++|||||++++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99999988877774 3466788899999999999864
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-13 Score=125.33 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=87.4
Q ss_pred hHHHhccC--CCCCCCcEEEEcCCCCcchHHHHhhcC-------cEEEEeCChHHHHHHHHHcCC-------CCCeEEEE
Q 043471 43 RPEVLSLL--PPYEGKTVLEFGAGIGRFTGELAKKAG-------HVIALDFIDSVIKKNEEVNGH-------FENVKFMC 106 (485)
Q Consensus 43 ~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~~-------~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~ 106 (485)
...+++.+ ...++.+|||||||+|.++..+++... +|+|+|+++.+++.|+++... ..+++++.
T Consensus 67 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 146 (227)
T 2pbf_A 67 HALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIH 146 (227)
T ss_dssp HHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEE
Confidence 34555555 356788999999999999999998753 999999999999999987532 35899999
Q ss_pred eeccCCCCC----CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 107 ADVTSPDLT----FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 107 ~d~~~~~~~----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+.. .. ...++||+|++...++++. +++.++|+|||.+++...
T Consensus 147 ~d~~~--~~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 147 KNIYQ--VNEEEKKELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CCGGG--CCHHHHHHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred CChHh--cccccCccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 99986 32 3457899999998877664 568899999999999755
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-14 Score=144.89 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=90.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC--CCCCCCccEEEEccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK--TYPENSFDVIYSRDT 358 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~--~~~~~~fD~i~~~~~ 358 (485)
.++.+|||||||+|.++..|++. |++|+|||+|+.+++.|+..+...+ .+++|.+++++++ ++++++||+|+|.++
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 45679999999999999999988 8999999999999999999886544 4799999999886 456789999999999
Q ss_pred ccccCCHHHH--HHHHHhcCCCCcEEEEEeccc
Q 043471 359 ILHIQDKPAL--FKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 359 ~~~~~~~~~~--l~~~~~~LkpgG~l~i~~~~~ 389 (485)
++|++++..+ +..+.+.|+++|..++.....
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 9999876533 556778899988877765443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-13 Score=130.78 Aligned_cols=123 Identities=20% Similarity=0.092 Sum_probs=97.3
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc---CcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~ 110 (485)
..+.+.....++..+...++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+ +++++++|+.
T Consensus 185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~ 264 (354)
T 3tma_A 185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADAR 264 (354)
T ss_dssp CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGG
T ss_pred CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChh
Confidence 34555566677777788888999999999999999999976 799999999999999998754322 8999999999
Q ss_pred CCCCCCCCCCeeEEEhhhhhhcc-C-----hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYL-S-----DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~-~-----~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ ++.+.+.||+|+++-.+... . ...+..+++++.++|+|||.+++..+
T Consensus 265 ~--~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 265 H--LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp G--GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred h--CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 8 55556779999997543221 1 11146899999999999999999755
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-14 Score=133.40 Aligned_cols=109 Identities=19% Similarity=0.326 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCC------CChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCG------IGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCT 341 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG------~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~ 341 (485)
...+.+++.+.. ++.+||||||| +|..+..+++++ +.+|+|+|+|+.|. . ...+++++++|+.
T Consensus 204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~--~~~rI~fv~GDa~ 274 (419)
T 3sso_A 204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V--DELRIRTIQGDQN 274 (419)
T ss_dssp HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G--CBTTEEEEECCTT
T ss_pred HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h--cCCCcEEEEeccc
Confidence 556677776643 45799999999 777777777653 67999999999983 1 2348999999999
Q ss_pred CCCCC------CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 342 KKTYP------ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 342 ~~~~~------~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++++. +++||+|++.. .++..+...+|++++++|||||++++.+..
T Consensus 275 dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 275 DAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 98776 68999999975 466678899999999999999999999865
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-13 Score=123.14 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=87.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC--CC---CCCc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT--YP---ENSF 350 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~--~~---~~~f 350 (485)
...++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++. ++..+++++.+|+.+.. ++ .++|
T Consensus 55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence 34567899999999999999999986 5799999999999999999886 44457999999986531 11 2679
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|+|++.... .....+++++.++|||||.+++.+...
T Consensus 135 D~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 135 DFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp SEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred CEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 999987652 356789999999999999998876543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=127.18 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=100.6
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPD 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~ 113 (485)
+.....++..+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|+++.... ++++++.+|+.+.
T Consensus 98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~- 176 (277)
T 1o54_A 98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG- 176 (277)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-
Confidence 344456777778888999999999999999999987 469999999999999999875322 4799999999873
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhccee
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
+++++||+|+++ .++ ...+++++.++|+|||.+++..+... ....+...+.+.||.
T Consensus 177 --~~~~~~D~V~~~-----~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~---------------~~~~~~~~l~~~gf~ 232 (277)
T 1o54_A 177 --FDEKDVDALFLD-----VPD--PWNYIDKCWEALKGGGRFATVCPTTN---------------QVQETLKKLQELPFI 232 (277)
T ss_dssp --CSCCSEEEEEEC-----CSC--GGGTHHHHHHHEEEEEEEEEEESSHH---------------HHHHHHHHHHHSSEE
T ss_pred --ccCCccCEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeCCHH---------------HHHHHHHHHHHCCCc
Confidence 456789999984 344 34799999999999999999765321 223455666677774
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=127.58 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCC-CC----CC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLT-FS----ED 119 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~-~~----~~ 119 (485)
...++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|+++.. ..++++++++|+.+. ++ +. .+
T Consensus 61 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~ 139 (225)
T 3tr6_A 61 KLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT-LAELIHAGQAW 139 (225)
T ss_dssp HHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH-HHHHHTTTCTT
T ss_pred HhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH-HHHhhhccCCC
Confidence 3456789999999999999999987 6799999999999999998753 224699999998652 11 11 17
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+||+|++... ......+++++.++|+|||++++.+...
T Consensus 140 ~fD~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 140 QYDLIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp CEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred CccEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 8999996542 2236689999999999999999976654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=123.71 Aligned_cols=103 Identities=16% Similarity=0.195 Sum_probs=82.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
.++.+|||||||+|..+..+++. +.+|+++|+|+.+++.|+++... .++++++++|+.+. ++..++ ||+|++
T Consensus 55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI-AAGQRD-IDILFM 132 (210)
T ss_dssp HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH-HTTCCS-EEEEEE
T ss_pred hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH-hccCCC-CCEEEE
Confidence 45779999999999999999987 67999999999999999986432 23699999998652 233346 999998
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
... ... ...+++++.++|+|||++++.+...
T Consensus 133 ~~~---~~~--~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 133 DCD---VFN--GADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp ETT---TSC--HHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred cCC---hhh--hHHHHHHHHHhcCCCeEEEEECccc
Confidence 732 223 5689999999999999999865543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-14 Score=130.81 Aligned_cols=107 Identities=19% Similarity=0.169 Sum_probs=85.0
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCC-----CC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFS-----ED 119 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~-----~~ 119 (485)
...++.+|||||||+|..+..+++. +.+|+++|+++++++.|+++.. ..++++++++|+.+. ++.. ++
T Consensus 57 ~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~~~~~~~~~~ 135 (242)
T 3r3h_A 57 RLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDT-LHSLLNEGGEH 135 (242)
T ss_dssp HHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHH-HHHHHHHHCSS
T ss_pred hhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHhhccCCC
Confidence 4456789999999999999999985 5799999999999998888653 234899999998753 1111 47
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+||+|++... ......+++++.++|+|||++++.+..+.
T Consensus 136 ~fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 136 QFDFIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp CEEEEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred CEeEEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 8999998643 22366899999999999999999766543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=116.68 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=94.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||||||+|.++..+++.+. +|+|+|+++.+++.|+++.. ...++++.++|..+. ..+.++||+|++.+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~--~~~~~~~D~IviaG 98 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSA--FEEADNIDTITICG 98 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cccccccCEEEEeC
Confidence 478999999999999999999863 79999999999999998753 224799999998763 23334799988654
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecC
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
+ .......++.+..+.|+++|+++++... ..+.+++++.+.||...
T Consensus 99 m----Gg~lI~~IL~~~~~~l~~~~~lIlqp~~-----------------~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 99 M----GGRLIADILNNDIDKLQHVKTLVLQPNN-----------------REDDLRKWLAANDFEIV 144 (230)
T ss_dssp E----CHHHHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEE
T ss_pred C----chHHHHHHHHHHHHHhCcCCEEEEECCC-----------------ChHHHHHHHHHCCCEEE
Confidence 4 3233668899999999999999997532 46789999999998543
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-14 Score=127.60 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCC
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~ 116 (485)
..++..+ ...++.+|||||||+|..+..+++. +.+|+|+|+++.+++.|+++.. ..++++++++|+.+....+
T Consensus 47 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 47 GKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQI 126 (223)
T ss_dssp HHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHH
Confidence 3444433 4456789999999999999999998 6799999999999999998753 2236999999986521011
Q ss_pred C---CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 117 S---EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 117 ~---~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+ .++||+|++... ......+++++.++|+|||++++.+...
T Consensus 127 ~~~~~~~fD~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 127 ENEKYEPFDFIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp HHTTCCCCSEEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred HhcCCCCcCEEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 1 157999998654 2225689999999999999999876544
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-13 Score=122.47 Aligned_cols=106 Identities=18% Similarity=0.390 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC--------C-CCeEEEEccCCC-CC--CCC
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL--------K-CSVEFEVADCTK-KT--YPE 347 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~--------~-~~i~~~~~d~~~-~~--~~~ 347 (485)
++++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++... + .++.++.+|+.+ ++ ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 4567799999999999999999886 469999999999999998876421 1 479999999987 44 667
Q ss_pred CCccEEEEcccccccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+++|.|+....-.+... ...+++++.++|+|||.+++..
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 88999986432111100 1589999999999999999963
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.42 E-value=4.6e-13 Score=123.59 Aligned_cols=106 Identities=16% Similarity=0.220 Sum_probs=80.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC----------CCCCeEEEEeeccCC-CCCCCCC
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG----------HFENVKFMCADVTSP-DLTFSED 119 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~----------~~~~~~~~~~d~~~~-~~~~~~~ 119 (485)
.++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++.. ...+++++++|+.+. +..++++
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 357799999999999999999985 479999999999999887532 235899999999762 2226678
Q ss_pred CeeEEEhhhhhhccChH------HHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDK------EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++|.|+....-.+.... ....++.++.++|+|||.+++.
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 99999865322221110 0147999999999999999995
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=128.98 Aligned_cols=114 Identities=22% Similarity=0.253 Sum_probs=87.8
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCC-------------CCCeEE
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGH-------------FENVKF 104 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~-------------~~~~~~ 104 (485)
.....++..+...++.+|||+|||+|.++..+++. | .+|+|+|+++.+++.|+++... ..++++
T Consensus 92 ~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 92 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 34566777778888999999999999999999987 4 6899999999999999987531 258999
Q ss_pred EEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 105 ~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++|+.+...++++++||+|++.. +. ...++.++.++|+|||.+++..+.
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~-----~~--~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDM-----LN--PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp EESCTTCCC-------EEEEEECS-----SS--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred EECChHHcccccCCCCeeEEEECC-----CC--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 999998743245667899999853 22 124789999999999999986553
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-13 Score=119.33 Aligned_cols=106 Identities=14% Similarity=0.278 Sum_probs=79.5
Q ss_pred HhccCC-CCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------
Q 043471 46 VLSLLP-PYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------ 114 (485)
Q Consensus 46 ~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------ 114 (485)
+.+.+. ..++.+|||+|||+|.++..++++ +.+|+|+|+|+.+ ..++++++++|+.+...
T Consensus 13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~ 83 (201)
T 2plw_A 13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNI 83 (201)
T ss_dssp HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC---
T ss_pred HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhccc
Confidence 344333 356789999999999999999987 3689999999931 12579999999987430
Q ss_pred -----------------CCCCCCeeEEEhhhhhhccC----hHH-----HHHHHHHHHhhcccCcEEEEEec
Q 043471 115 -----------------TFSEDSVDMMFSNWLLMYLS----DKE-----VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 -----------------~~~~~~~D~v~~~~~~~~~~----~~~-----~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+++++||+|+++.++++.. +.. ...+++++.++|+|||.+++...
T Consensus 84 ~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 84 NYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 04567999999988776642 111 12488999999999999998644
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-12 Score=127.34 Aligned_cols=118 Identities=21% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~~~~~ 346 (485)
..+..++......++.+|||+|||+|.++..++... +.+++|+|+++.+++.|++++...+. ++++.++|+.+++.+
T Consensus 190 ~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~ 269 (354)
T 3tma_A 190 VLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF 269 (354)
T ss_dssp HHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred HHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence 455667777888889999999999999999999864 37999999999999999999863332 799999999998777
Q ss_pred CCCccEEEEcccccccC--------CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 347 ENSFDVIYSRDTILHIQ--------DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..+||+|+++..+..-. ....+++++.++|||||++++.+.
T Consensus 270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 77899999976654321 136789999999999999999843
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-13 Score=123.14 Aligned_cols=110 Identities=11% Similarity=0.178 Sum_probs=88.3
Q ss_pred hhhHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhh-c-------CcEEEEeCChHHHHHHHHHcCC-------CCCeE
Q 043471 41 EERPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKK-A-------GHVIALDFIDSVIKKNEEVNGH-------FENVK 103 (485)
Q Consensus 41 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~-------~~v~giD~s~~~~~~a~~~~~~-------~~~~~ 103 (485)
.....+++.+. ..++.+|||||||+|..+..+++. + .+|+|+|+++++++.|+++... ..+++
T Consensus 69 ~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~ 148 (227)
T 1r18_A 69 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 148 (227)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceE
Confidence 33456667663 567889999999999999999885 4 4899999999999999987532 25899
Q ss_pred EEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 104 FMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 104 ~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++.+|+... ++ ..++||+|++...++++. +++.+.|+|||++++...
T Consensus 149 ~~~~d~~~~-~~-~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 149 IVEGDGRKG-YP-PNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp EEESCGGGC-CG-GGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred EEECCcccC-CC-cCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 999999762 21 237899999998888876 468899999999999754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.4e-13 Score=128.07 Aligned_cols=107 Identities=20% Similarity=0.227 Sum_probs=85.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCC-CeEEEEccCCCCCC----CCCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKC-SVEFEVADCTKKTY----PENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~-~i~~~~~d~~~~~~----~~~~fD~i 353 (485)
..++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++. ++.. +++++++|+.+... ..++||+|
T Consensus 151 ~~~~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 151 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred cCCCCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence 346779999999999999999987 6799999999999999999876 3333 48999999876421 14689999
Q ss_pred EEccc----------ccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 354 YSRDT----------ILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 354 ~~~~~----------~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++... +.+..+...+++++.++|+|||.+++....
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 99543 223345778999999999999998887543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=121.24 Aligned_cols=113 Identities=23% Similarity=0.276 Sum_probs=92.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTF 116 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~ 116 (485)
......++..+...++.+|||+|||+|.++..+++.+.+|+++|+|+++++.|+++... .++++++.+|+.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~ 154 (248)
T 2yvl_A 77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA--EV 154 (248)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS--CC
T ss_pred chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhc--cc
Confidence 44455677777778899999999999999999998888999999999999999987532 25799999998763 22
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++++||+|+++ .++ ...+++++.++|+|||.+++..+.
T Consensus 155 ~~~~~D~v~~~-----~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 155 PEGIFHAAFVD-----VRE--PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp CTTCBSEEEEC-----SSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred CCCcccEEEEC-----CcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 45789999984 333 347899999999999999997653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-13 Score=133.10 Aligned_cols=140 Identities=16% Similarity=0.202 Sum_probs=106.2
Q ss_pred HHhccC--CCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 45 EVLSLL--PPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 45 ~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
.+++.+ ...++.+|||||||+|.++..++++. .+++++|+ +.+++.|++ .++++++.+|+.+ ++ + .
T Consensus 182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~~--~--~ 251 (358)
T 1zg3_A 182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-SI--P--S 251 (358)
T ss_dssp HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-CC--C--C
T ss_pred HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-CC--C--C
Confidence 345555 23456799999999999999999884 57999999 788876654 2569999999876 33 3 4
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhccc---CcEEEEEeccCCCCCcc-----ccC--------CCCCCCCChhHHH
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKV---GGYIFFRESCFHQSGDS-----KRK--------HNPTHYREPRFYS 184 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~ 184 (485)
||+|++..++||++++...+++++++++|+| ||.+++.+......... ... ......++.+.|.
T Consensus 252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~ 331 (358)
T 1zg3_A 252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWE 331 (358)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHH
T ss_pred ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHH
Confidence 9999999999999987777999999999999 99999988765432211 000 0012234788899
Q ss_pred HHhhhcceec
Q 043471 185 KVFKECQIQD 194 (485)
Q Consensus 185 ~~~~~~~~~~ 194 (485)
++++++||..
T Consensus 332 ~ll~~aGf~~ 341 (358)
T 1zg3_A 332 KLIYDAGFSS 341 (358)
T ss_dssp HHHHHTTCCE
T ss_pred HHHHHcCCCe
Confidence 9999999854
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-13 Score=128.00 Aligned_cols=131 Identities=13% Similarity=0.092 Sum_probs=93.7
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
..++.+|||||||+|.++..+++. ..+|+++|+++.+++.|+++.. ..++++++.+|+.+.....++++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 356789999999999999999987 4699999999999999998752 23689999999976321114679999
Q ss_pred EEhhhhhhccChHHH--HHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhccee
Q 043471 124 MFSNWLLMYLSDKEV--EKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 124 v~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
|++....++.+.... .++++++.++|+|||.+++...+... .......+.+.++++||.
T Consensus 173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-----------~~~~~~~~~~~l~~~GF~ 233 (304)
T 3bwc_A 173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL-----------DLELIEKMSRFIRETGFA 233 (304)
T ss_dssp EEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT-----------CHHHHHHHHHHHHHHTCS
T ss_pred EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-----------chHHHHHHHHHHHhCCCC
Confidence 999765554433212 58999999999999999997432110 011344566777787774
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.6e-13 Score=123.69 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=90.9
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC-C-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC----CCCC
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF-D-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY----PENS 349 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~----~~~~ 349 (485)
..+...++.+|||+|||+|..+..+++.. + .+|+|+|+++.+++.+++++...+ .++++.++|+.+.+. ..++
T Consensus 77 ~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~ 156 (274)
T 3ajd_A 77 IVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIF 156 (274)
T ss_dssp HHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCC
T ss_pred HHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcccc
Confidence 34467789999999999999999999865 3 699999999999999999986444 379999999877643 2578
Q ss_pred ccEEEEccccc------------------ccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 350 FDVIYSRDTIL------------------HIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 350 fD~i~~~~~~~------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
||+|++..... .......+++++.++|||||++++++...
T Consensus 157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 99999873221 12456889999999999999999986543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.1e-13 Score=127.12 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=98.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
.+...+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++... ..+++++++|+..+ +..++
T Consensus 109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~--~~~~~ 186 (315)
T 1ixk_A 109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHI--GELNV 186 (315)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGG--GGGCC
T ss_pred HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhc--ccccc
Confidence 3445567778899999999999999999986 36899999999999999987532 24799999999873 33457
Q ss_pred CeeEEEhh------hhhhccCh-------H-------HHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCC
Q 043471 120 SVDMMFSN------WLLMYLSD-------K-------EVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYRE 179 (485)
Q Consensus 120 ~~D~v~~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 179 (485)
+||+|++. +++.+.++ . ...++++++.++|||||++++++.+.... ..
T Consensus 187 ~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------------En 254 (315)
T 1ixk_A 187 EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------EN 254 (315)
T ss_dssp CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------GT
T ss_pred cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH------------Hh
Confidence 89999973 22332221 0 12589999999999999999987654321 12
Q ss_pred hhHHHHHhhhcceec
Q 043471 180 PRFYSKVFKECQIQD 194 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~ 194 (485)
......++++.++..
T Consensus 255 e~~v~~~l~~~~~~~ 269 (315)
T 1ixk_A 255 EFVIQWALDNFDVEL 269 (315)
T ss_dssp HHHHHHHHHHSSEEE
T ss_pred HHHHHHHHhcCCCEE
Confidence 334566677666643
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=113.91 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=76.7
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
...++.+|||+|||+|.++..+++. +. +|+|+|+|+.+++.|+++.. +++++++|+.+++ ++||+|+++..
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~----~~~~~~~d~~~~~---~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS---GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC----CCEEEECcHHHCC---CCeeEEEECCC
Confidence 4557789999999999999999987 54 79999999999999999875 7899999998864 68999999999
Q ss_pred ccccCC--HHHHHHHHHhcCCCCcEEEEE
Q 043471 359 ILHIQD--KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 359 ~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++|..+ ...+++++.+++ |+ +++.
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~--g~-~~~~ 145 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS--MW-IYSI 145 (200)
T ss_dssp C-------CHHHHHHHHHHE--EE-EEEE
T ss_pred chhccCchhHHHHHHHHHhc--Cc-EEEE
Confidence 998853 457899999998 44 4443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-12 Score=116.58 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
...++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++.. +++++++|+.+ ++ ++||+|+++..
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~--~~---~~~D~v~~~~p 119 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSE--IS---GKYDTWIMNPP 119 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGG--CC---CCEEEEEECCC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHH--CC---CCeeEEEECCC
Confidence 345788999999999999999998865 69999999999999999874 79999999987 32 68999999998
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
++|........+++++.+.+ |+.+++
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 120 FGSVVKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp C-------CHHHHHHHHHHE--EEEEEE
T ss_pred chhccCchhHHHHHHHHHhc--CcEEEE
Confidence 88886543457899999988 443333
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.9e-13 Score=123.78 Aligned_cols=114 Identities=21% Similarity=0.216 Sum_probs=88.8
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~ 114 (485)
.++.....+++.+...++.+|||||||+|.++..|++.+.+|+|+|+|+.|++.++++.... ++++++++|+.+.++
T Consensus 12 ~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~ 91 (285)
T 1zq9_A 12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccc
Confidence 46677888999998888999999999999999999999999999999999999999986532 479999999987443
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHH--------------HHH--HhhcccCcEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLA--------------ERM--VKWLKVGGYIF 156 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l--------------~~~--~~~L~pgG~l~ 156 (485)
.+||+|+++..++ +..+....++ +++ .++|+|||.++
T Consensus 92 ----~~fD~vv~nlpy~-~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 92 ----PFFDTCVANLPYQ-ISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp ----CCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ----hhhcEEEEecCcc-cchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 3799999975433 3322233333 233 35889998763
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8.1e-12 Score=115.87 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=102.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+++|.+|||+|||+|.++..++++...+|+++|++|.+++.+++++. ++..+++++++|..+++ +.+.||.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC
Confidence 56889999999999999999998855699999999999999999886 55567999999998875 3578999997643
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
+....++..+.++|||||++.+.+....... .-...+.+.+.++..|+++..+
T Consensus 202 ----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~--------------~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 202 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--------------PREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--------------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----CcHHHHHHHHHHHcCCCCEEEEEeeeccccc--------------chhHHHHHHHHHHHcCCcEEEE
Confidence 3456788889999999999987755432211 1123466778889999986443
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.38 E-value=8.8e-14 Score=127.84 Aligned_cols=107 Identities=18% Similarity=0.236 Sum_probs=88.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCC------CCCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYP------ENSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~------~~~f 350 (485)
..++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++. ++..+++++.+|+.+.... +++|
T Consensus 58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF 137 (242)
T ss_dssp HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence 3456799999999999999999865 5799999999999999999886 4446899999998664211 4789
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|+|++... ..+...+++++.++|||||.+++.+....
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 138 DFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred eEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 99998754 34677899999999999999999876543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-13 Score=121.71 Aligned_cols=106 Identities=19% Similarity=0.301 Sum_probs=86.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-CC----CCCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-YP----ENSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~~----~~~f 350 (485)
..++.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++. +...++++.++|+.+. + +. .++|
T Consensus 62 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY 141 (225)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred hhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence 3467799999999999999999875 5799999999999999999886 3445699999998553 1 11 1789
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|+|++... ..+...+++++.++|||||++++.+...
T Consensus 142 D~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 142 DLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 99997553 3467889999999999999999987654
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-13 Score=129.38 Aligned_cols=117 Identities=11% Similarity=0.012 Sum_probs=86.5
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CC--CeEEEEeeccCCCCCC--C
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FE--NVKFMCADVTSPDLTF--S 117 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~--~~~~~~~d~~~~~~~~--~ 117 (485)
.+.+.+. ..++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.|+++... .. +++++++|+.+..... .
T Consensus 143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~ 222 (332)
T 2igt_A 143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR 222 (332)
T ss_dssp HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc
Confidence 3555543 34578999999999999999999988999999999999999987431 12 4999999997631000 1
Q ss_pred CCCeeEEEhhhhhhcc--------ChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 118 EDSVDMMFSNWLLMYL--------SDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~--------~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.++||+|++.-..... .......+++++.++|+|||++++...+
T Consensus 223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 4689999985321110 0123678999999999999998886554
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=121.21 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=89.6
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
.+.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ .++.++.+|+.+.+. .++||+|++..
T Consensus 116 ~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~ 194 (272)
T 3a27_A 116 ISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGY 194 (272)
T ss_dssp SCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECC
T ss_pred hcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCc-cCCceEEEECC
Confidence 36678899999999999999999885 4599999999999999999886443 378899999988743 57899999976
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
.. +...++.++.+.|+|||++++++...
T Consensus 195 p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 195 VH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred cc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 54 67789999999999999999987654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-12 Score=122.03 Aligned_cols=114 Identities=19% Similarity=0.257 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
..++.+++.+...++.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++... ..+++++++|+.+. ++
T Consensus 110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~- 187 (284)
T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK- 187 (284)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-
T ss_pred HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-
Confidence 344555555544466799999999999999998874569999999999999999998643 34599999999873 33
Q ss_pred CCc---cEEEEccccc-----------cc--------CCHHHHHHHHH-hcCCCCcEEEEE
Q 043471 348 NSF---DVIYSRDTIL-----------HI--------QDKPALFKSFF-KWLKPGGTVLIS 385 (485)
Q Consensus 348 ~~f---D~i~~~~~~~-----------~~--------~~~~~~l~~~~-~~LkpgG~l~i~ 385 (485)
++| |+|+++.... |- .+...+++++. +.|+|||++++.
T Consensus 188 ~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 188 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 578 9999973221 22 12337899999 999999999986
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-12 Score=125.06 Aligned_cols=135 Identities=19% Similarity=0.122 Sum_probs=104.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 346 (485)
..+..++... ..++.+|||+|||+|.++..++.... .+++|+|+|+.|++.|++++...+ .++++.++|+.+++++
T Consensus 205 ~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 205 SIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY 283 (373)
T ss_dssp HHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred HHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence 4455566666 77889999999999999999998742 399999999999999999986433 4899999999999887
Q ss_pred CCCccEEEEccccccc----CC----HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 347 ENSFDVIYSRDTILHI----QD----KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~----~~----~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
+++||+|+++..+..- .. ...+++++.++| ||.+++... +...+.+.
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-----------------------~~~~~~~~ 338 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-----------------------EKKAIEEA 338 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-----------------------CHHHHHHH
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-----------------------CHHHHHHH
Confidence 7899999998665432 11 267788999988 455444421 35667788
Q ss_pred HHhCCCeEEEEe
Q 043471 419 LKDAGFVDIIAE 430 (485)
Q Consensus 419 l~~aGf~~~~~~ 430 (485)
+++.||+.....
T Consensus 339 ~~~~G~~~~~~~ 350 (373)
T 3tm4_A 339 IAENGFEIIHHR 350 (373)
T ss_dssp HHHTTEEEEEEE
T ss_pred HHHcCCEEEEEE
Confidence 899999987643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-13 Score=127.64 Aligned_cols=112 Identities=14% Similarity=0.153 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---CCCCCeEEE--EccCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---GLKCSVEFE--VADCTKKTY 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---~~~~~i~~~--~~d~~~~~~ 345 (485)
.+..+++...++++.+|||+|||+|.++..++++ .+|+|+|+|+ |+..++++.. ..+.++.++ ++|+.+++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~- 145 (276)
T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME- 145 (276)
T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-
T ss_pred HHHHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-
Confidence 3455666655678899999999999999999988 5999999998 6433322110 112268888 89998865
Q ss_pred CCCCccEEEEcccccccCCH----H---HHHHHHHhcCCCCc--EEEEEecc
Q 043471 346 PENSFDVIYSRDTILHIQDK----P---ALFKSFFKWLKPGG--TVLISDYC 388 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~----~---~~l~~~~~~LkpgG--~l~i~~~~ 388 (485)
+++||+|+|..+ ++..++ . .+|+++.++||||| .+++..+.
T Consensus 146 -~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 -PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred -CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 689999999877 444332 1 37899999999999 99987554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-13 Score=125.77 Aligned_cols=113 Identities=17% Similarity=0.197 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHh---cCCCCCeEEE--EccCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA---IGLKCSVEFE--VADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~---~~~~~~i~~~--~~d~~~~~ 344 (485)
..+..+++...++++.+|||+|||+|.++..++++ .+|+|+|+++ |+..++++. ...+.++.++ ++|+.+++
T Consensus 61 ~KL~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 61 AKLAWMEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP 137 (265)
T ss_dssp HHHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC
Confidence 44566677766778999999999999999999987 5999999998 533222111 0111268888 89998875
Q ss_pred CCCCCccEEEEcccccccCCH----H---HHHHHHHhcCCCCc--EEEEEecc
Q 043471 345 YPENSFDVIYSRDTILHIQDK----P---ALFKSFFKWLKPGG--TVLISDYC 388 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~----~---~~l~~~~~~LkpgG--~l~i~~~~ 388 (485)
+++||+|+|..+ ++..++ . .+|+.+.++||||| .+++..+.
T Consensus 138 --~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 --VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp --CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred --CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 689999999877 544332 1 37899999999999 99987654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=125.32 Aligned_cols=102 Identities=28% Similarity=0.354 Sum_probs=84.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEc---
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSR--- 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~--- 356 (485)
-+++.|||||||+|.++...++....+|+|+|.|+ |++.|++.+. ++..+|+++.+|++++.++ ++||+|++-
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMG 159 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCB
T ss_pred cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccc
Confidence 36789999999999999887776335899999996 8888988765 5667899999999998876 789999994
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+.+-...+.++....|+|||||.++-.
T Consensus 160 ~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 160 YGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp TTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccchhhhHHHHHHhhCCCCceECCc
Confidence 34444457888999999999999998644
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=110.43 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=97.7
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
....++.+|||+|||+|.++..+++....+++|+|+|+.+++.|++++...+.+++++++|+.+++ ++||+|+++..
T Consensus 45 ~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~D~v~~~~p 121 (207)
T 1wy7_A 45 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN---SRVDIVIMNPP 121 (207)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC---CCCSEEEECCC
T ss_pred cCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC---CCCCEEEEcCC
Confidence 345678899999999999999999873348999999999999999998754447999999998864 48999999988
Q ss_pred ccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
+++.. ....+++++.++| ||. ++..... . .+.+.+.+.+++.||++..+..
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~-~~~~~~~------~-------------~~~~~~~~~l~~~g~~~~~~~~ 174 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVV-YSIHLAK------P-------------EVRRFIEKFSWEHGFVVTHRLT 174 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEE-EEEEECC------H-------------HHHHHHHHHHHHTTEEEEEEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcE-EEEEeCC------c-------------CCHHHHHHHHHHCCCeEEEEEE
Confidence 87763 4567899999998 554 4432110 0 1134567788999998766544
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-13 Score=124.83 Aligned_cols=141 Identities=18% Similarity=0.164 Sum_probs=89.0
Q ss_pred hhHHHhccCCCC-CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC-----CCeEEEE-eeccCCC
Q 043471 42 ERPEVLSLLPPY-EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF-----ENVKFMC-ADVTSPD 113 (485)
Q Consensus 42 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~-~d~~~~~ 113 (485)
....+++.+... ++.+|||||||+|.++..|++.|. +|+|+|+|++|++.|+++.... .++.+.. .++..
T Consensus 24 kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~-- 101 (232)
T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ-- 101 (232)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS--
T ss_pred HHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc--
Confidence 445667777654 577999999999999999999985 9999999999999987754310 1222222 12111
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCC-----CC-CCCCChhHHHHHh
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKH-----NP-THYREPRFYSKVF 187 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 187 (485)
..+...+||+++++. ..++.+++++|||||.+++............-.. ++ .+....+.+...+
T Consensus 102 ~~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l 171 (232)
T 3opn_A 102 GRPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTA 171 (232)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHH
Confidence 012334677666552 4799999999999999998531100000000000 01 1112456678888
Q ss_pred hhcceec
Q 043471 188 KECQIQD 194 (485)
Q Consensus 188 ~~~~~~~ 194 (485)
+++||..
T Consensus 172 ~~aGf~v 178 (232)
T 3opn_A 172 TQLGFSV 178 (232)
T ss_dssp HHHTEEE
T ss_pred HHCCCEE
Confidence 8999853
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=121.89 Aligned_cols=112 Identities=24% Similarity=0.313 Sum_probs=88.1
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYP 346 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~ 346 (485)
...+..+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....+ .+++++++|+.+.+++
T Consensus 14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 356788889998889999999999999999999988 6799999999999999999876433 4799999999987764
Q ss_pred CCCccEEEEcccc-----------cccCCHHHHH----HHH--HhcCCCCcEEE
Q 043471 347 ENSFDVIYSRDTI-----------LHIQDKPALF----KSF--FKWLKPGGTVL 383 (485)
Q Consensus 347 ~~~fD~i~~~~~~-----------~~~~~~~~~l----~~~--~~~LkpgG~l~ 383 (485)
+||+|+++..+ +|.++...++ +++ +++|+|||.++
T Consensus 93 --~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 --FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp --CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred --hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 79999997433 3333321111 233 46899999764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=118.04 Aligned_cols=105 Identities=19% Similarity=0.286 Sum_probs=85.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCC----CCCCC--CCcc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTK----KTYPE--NSFD 351 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~----~~~~~--~~fD 351 (485)
.++.+|||||||+|..+..+++.+ +.+++++|+++.+++.|++++. +...++++..+|+.+ ++..+ ++||
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 456799999999999999999876 4699999999999999998875 344579999998644 22223 7899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
+|++... ..+...+++++.++|+|||.+++.+...
T Consensus 151 ~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 9998754 2467889999999999999999986543
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-12 Score=126.58 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=93.1
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC-C-CEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCC
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-D-VHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENS 349 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~-~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~ 349 (485)
+...+...++.+|||+|||+|..+..+++.. + .+|+++|+|+.+++.+++++...+ .++++.++|+...+ +++++
T Consensus 251 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 3445578889999999999999999999876 3 699999999999999999987444 37999999998875 55578
Q ss_pred ccEEEE------cccccccCCH----------------HHHHHHHHhcCCCCcEEEEEeccc
Q 043471 350 FDVIYS------RDTILHIQDK----------------PALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 350 fD~i~~------~~~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
||+|++ .+++.+.++. ..+++++.++|||||++++++...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 999996 3344444443 578999999999999999986543
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=115.12 Aligned_cols=118 Identities=8% Similarity=0.043 Sum_probs=94.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
++.+|||||||+|.++..|++.+. +|+|+|+++.+++.|+++.. ...++++.++|..+. ..+..+||+|++.+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~--~~~~~~~D~Iviag 98 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAV--IEKKDAIDTIVIAG 98 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCGGGCCCEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhc--cCccccccEEEEeC
Confidence 468999999999999999999863 79999999999999998753 224699999998763 22333699988654
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+ .......++.+..+.|+++|+++++... ..+.+++++.+.||..
T Consensus 99 m----Gg~lI~~IL~~~~~~L~~~~~lIlq~~~-----------------~~~~lr~~L~~~Gf~i 143 (244)
T 3gnl_A 99 M----GGTLIRTILEEGAAKLAGVTKLILQPNI-----------------AAWQLREWSEQNNWLI 143 (244)
T ss_dssp E----CHHHHHHHHHHTGGGGTTCCEEEEEESS-----------------CHHHHHHHHHHHTEEE
T ss_pred C----chHHHHHHHHHHHHHhCCCCEEEEEcCC-----------------ChHHHHHHHHHCCCEE
Confidence 3 3334678899999999999999997432 4678899999999864
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=8.5e-13 Score=121.62 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-C-C-----CCCCc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-T-Y-----PENSF 350 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~-~-----~~~~f 350 (485)
.++.+|||||||+|..+..+++.+ +.+++++|+++.+++.|++++.. +..+++++.+|+.+. + + ++++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 456799999999999999999876 57999999999999999998763 445799999998653 2 1 15789
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|++... ..+...+++++.++|||||.+++.+..
T Consensus 158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 99998653 357889999999999999999987643
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=122.45 Aligned_cols=102 Identities=25% Similarity=0.301 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.|+++.. ...++.++++|+.+. +. .++||+|++.
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~--~~-~~~~D~Vi~d 193 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV--EL-KDVADRVIMG 193 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC--CC-TTCEEEEEEC
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc--Cc-cCCceEEEEC
Confidence 45678999999999999999999854 99999999999999998653 235789999999884 22 5789999987
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
... . ...++.++.+.|+|||.+++++...
T Consensus 194 ~p~----~--~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 194 YVH----K--THKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp CCS----S--GGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred Ccc----c--HHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 542 2 4578999999999999999986643
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-13 Score=124.66 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-C-----CC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT-F-----SE 118 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~-~-----~~ 118 (485)
...++.+|||||||+|..+..+++. +.+|+++|+|+++++.|+++... .++++++++|+.+. ++ + ++
T Consensus 76 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~~l~~~~~~~ 154 (247)
T 1sui_A 76 KLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-LDEMIKDEKNH 154 (247)
T ss_dssp HHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHSGGGT
T ss_pred HhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH-HHHHHhccCCC
Confidence 3456779999999999999999987 67999999999999999987532 24799999998652 11 1 15
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++||+|++... ... ...+++++.++|+|||++++.+..
T Consensus 155 ~~fD~V~~d~~---~~~--~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 155 GSYDFIFVDAD---KDN--YLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp TCBSEEEECSC---STT--HHHHHHHHHHHBCTTCCEEEECTT
T ss_pred CCEEEEEEcCc---hHH--HHHHHHHHHHhCCCCeEEEEecCC
Confidence 78999998643 222 678999999999999999987554
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=5e-13 Score=122.79 Aligned_cols=119 Identities=17% Similarity=0.184 Sum_probs=89.0
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSP 112 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 112 (485)
.+.....+...+...++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++.... .+++++++|+.+.
T Consensus 45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~ 124 (239)
T 2hnk_A 45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET 124 (239)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence 3334444444444556889999999999999999987 579999999999999999875321 3599999998642
Q ss_pred -C-C-----------CCCC--CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 113 -D-L-----------TFSE--DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 113 -~-~-----------~~~~--~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+ + .|++ ++||+|++.... .....+++++.++|+|||++++.+..+
T Consensus 125 ~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 125 LQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp HHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHHHhhcccccccccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 0 1 1233 789999987432 225689999999999999999976543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-13 Score=126.38 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=80.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC---CCC-CeEEE--EeeccCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG---HFE-NVKFM--CADVTSPDLTFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~---~~~-~~~~~--~~d~~~~~~~~~ 117 (485)
.++++.....++.+|||+|||+|.++..++++ .+|+|+|+|+ |+..++++.. ..+ ++.++ ++|+.. ++
T Consensus 72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~-- 145 (276)
T 2wa2_A 72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTK--ME-- 145 (276)
T ss_dssp HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGG--CC--
T ss_pred HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhh--CC--
Confidence 34555544567889999999999999999998 7999999999 6433322211 111 78999 999987 43
Q ss_pred CCCeeEEEhhhhhhccChHH-----HHHHHHHHHhhcccCc--EEEEEec
Q 043471 118 EDSVDMMFSNWLLMYLSDKE-----VEKLAERMVKWLKVGG--YIFFRES 160 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG--~l~~~~~ 160 (485)
+++||+|+|..+ ++.+... ...+++++.++|+||| .+++...
T Consensus 146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 679999999876 4433211 1147899999999999 9988654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=113.08 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=94.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCC-CeeEEEhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSED-SVDMMFSN 127 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~-~~D~v~~~ 127 (485)
++.+|||||||+|.+++.+++.+ .+|+|+|+++.+++.|+++.. ...++++.++|..+. + +.+ +||+|++.
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l--~~~~~~D~Ivia 91 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-F--EETDQVSVITIA 91 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-C--CGGGCCCEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-c--ccCcCCCEEEEc
Confidence 57899999999999999999986 389999999999999998753 223699999998542 2 223 69998876
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
++ .......++.++.+.|+|+|+++++... ..+..++++.+.||....
T Consensus 92 G~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~~-----------------~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 92 GM----GGRLIARILEEGLGKLANVERLILQPNN-----------------REDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp EE----CHHHHHHHHHHTGGGCTTCCEEEEEESS-----------------CHHHHHHHHHHTTEEEEE
T ss_pred CC----ChHHHHHHHHHHHHHhCCCCEEEEECCC-----------------CHHHHHHHHHHCCCEEEE
Confidence 53 3333678999999999999999996441 467888999999986443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=112.94 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=85.6
Q ss_pred ChhhhHHHhcc---CCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCC
Q 043471 39 DKEERPEVLSL---LPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~---~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~ 113 (485)
+......++.. ....++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ +++++++|+.++
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~- 109 (207)
T 1wy7_A 31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF- 109 (207)
T ss_dssp CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-
T ss_pred chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-
Confidence 34444444433 2455788999999999999999999865 69999999999999999865333 799999999873
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+ ++||+|+++..+++........+++++.+++ ||.+++
T Consensus 110 -~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~ 147 (207)
T 1wy7_A 110 -N---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI 147 (207)
T ss_dssp -C---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred -C---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence 2 4899999987776665333557899999988 554443
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-13 Score=121.64 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC--CCCCCC--CCe
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP--DLTFSE--DSV 121 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~--~~~~~~--~~~ 121 (485)
..++.+|||||||+|..+..+++. +.+|+++|+|+++++.|+++.. ..++++++++|+.+. .++..+ ++|
T Consensus 70 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~f 149 (232)
T 3cbg_A 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEF 149 (232)
T ss_dssp HHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCE
T ss_pred hcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 346779999999999999999986 5699999999999999998652 224699999997542 122223 789
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+|++... ......+++++.++|+|||++++.+..+
T Consensus 150 D~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 150 DLIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred CEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 99997643 2236789999999999999999976654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=8.5e-13 Score=126.50 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
..++.+|||||||+|.++..+++. ..+|+++|+|+.+++.|+++... .++++++++|+.+.....++++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 456789999999999999999987 46999999999999999987531 3589999999875311124578999
Q ss_pred EEhhhhhhcc-ChH-HHHHHHHHHHhhcccCcEEEEEe
Q 043471 124 MFSNWLLMYL-SDK-EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 124 v~~~~~~~~~-~~~-~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|++...-.+. ... ....+++++.++|+|||.+++..
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9986532111 111 13589999999999999999963
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.7e-12 Score=122.15 Aligned_cols=129 Identities=11% Similarity=0.004 Sum_probs=98.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEccCCC-CCC-CCCCccEEEEc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVADCTK-KTY-PENSFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~d~~~-~~~-~~~~fD~i~~~ 356 (485)
..++.+|||+| |+|.++..++... +.+|+|+|+|+.|++.|++++...+. +++++.+|+.+ +|. .+++||+|+++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~ 248 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD 248 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence 34678999999 9999999998874 36999999999999999999863322 79999999988 653 34689999998
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEE-EEEecccCCCCCChhHHHHHHhcCCCCCCH---HHHHHHHH-hCCCeEEEEe
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTV-LISDYCKSFGTPSVEFSEYIKQRGYDLHDV---KSYGQMLK-DAGFVDIIAE 430 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~-~aGf~~~~~~ 430 (485)
..++.. ....+++++.++|||||++ ++... .. ..+. ..+.+.+. +.||.+..+.
T Consensus 249 ~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~-~~------------------~~~~~~~~~~~~~l~~~~g~~~~~~~ 307 (373)
T 2qm3_A 249 PPETLE-AIRAFVGRGIATLKGPRCAGYFGIT-RR------------------ESSLDKWREIQKLLLNEFNVVITDII 307 (373)
T ss_dssp CCSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC-TT------------------TCCHHHHHHHHHHHHHTSCCEEEEEE
T ss_pred CCCchH-HHHHHHHHHHHHcccCCeEEEEEEe-cC------------------cCCHHHHHHHHHHHHHhcCcchhhhh
Confidence 765443 3578999999999999954 44422 10 0122 45667777 8999876543
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-12 Score=123.63 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=83.1
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
+.+|||||||+|.++..+++. +.+|++||+++.+++.|+++... .++++++.+|+.++...+++++||+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 449999999999999999984 66999999999999999998764 35899999998763112346799999986433
Q ss_pred hccChHH--HHHHHHHHHhhcccCcEEEEEec
Q 043471 131 MYLSDKE--VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 131 ~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+...... ..+++++++++|+|||++++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 2211111 25799999999999999998643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=120.11 Aligned_cols=106 Identities=16% Similarity=0.325 Sum_probs=86.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-C----------
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-T---------- 344 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~---------- 344 (485)
...++.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++.. ...++++..+|+.+. +
T Consensus 57 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~ 136 (239)
T 2hnk_A 57 KISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS 136 (239)
T ss_dssp HHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred HhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence 44567899999999999999999886 57999999999999999998753 334589999987542 1
Q ss_pred ----CCC--CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 ----YPE--NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 ----~~~--~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++ ++||+|++.... ++...+++++.++|+|||++++.+..
T Consensus 137 ~~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 137 WASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp GGTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 789999997543 45678999999999999999998644
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=126.13 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=94.6
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--CCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--YPENS 349 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--~~~~~ 349 (485)
..+...+...++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.+++++...+.++.+.++|+...+ +++++
T Consensus 236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~ 315 (429)
T 1sqg_A 236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQ 315 (429)
T ss_dssp HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCC
T ss_pred HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCC
Confidence 3444556778899999999999999999998763 69999999999999999998755556889999998875 55678
Q ss_pred ccEEEEc------ccccccCCH----------------HHHHHHHHhcCCCCcEEEEEeccc
Q 043471 350 FDVIYSR------DTILHIQDK----------------PALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 350 fD~i~~~------~~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
||+|++. +++.+.++. ..+++++.++|||||++++++...
T Consensus 316 fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999973 334444442 478999999999999999987543
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-12 Score=122.39 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=88.6
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--c-CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC--
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--A-GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-- 116 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-- 116 (485)
..+...+...++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++... ..+++++++|+......+
T Consensus 73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 152 (274)
T 3ajd_A 73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLK 152 (274)
T ss_dssp GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhh
Confidence 33445566778899999999999999999984 4 6999999999999999887532 248999999998732100
Q ss_pred CCCCeeEEEhhh------hhhccC---h-------HHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 117 SEDSVDMMFSNW------LLMYLS---D-------KEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 117 ~~~~~D~v~~~~------~~~~~~---~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
..++||+|++.. ++.+-+ . ....++++++.++|||||.+++++.+..
T Consensus 153 ~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~ 215 (274)
T 3ajd_A 153 NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME 215 (274)
T ss_dssp TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence 257899999762 222100 0 1146899999999999999999876543
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4e-13 Score=124.60 Aligned_cols=110 Identities=15% Similarity=0.131 Sum_probs=80.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC---CCC-CeEEE--EeeccCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG---HFE-NVKFM--CADVTSPDLTFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~---~~~-~~~~~--~~d~~~~~~~~~ 117 (485)
.++++.....++.+|||||||+|.++..++++ .+|+|+|+|+ |+..+++... ..+ ++.++ ++|+.. ++
T Consensus 64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~--l~-- 137 (265)
T 2oxt_A 64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHT--LP-- 137 (265)
T ss_dssp HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTT--SC--
T ss_pred HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhH--CC--
Confidence 45555544567889999999999999999988 8999999999 5433222110 011 68999 999987 43
Q ss_pred CCCeeEEEhhhhhhccChHH-----HHHHHHHHHhhcccCc--EEEEEec
Q 043471 118 EDSVDMMFSNWLLMYLSDKE-----VEKLAERMVKWLKVGG--YIFFRES 160 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~-----~~~~l~~~~~~L~pgG--~l~~~~~ 160 (485)
+++||+|+|..+ ++.+... ...+++.+.++|+||| .+++...
T Consensus 138 ~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 138 VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeC
Confidence 679999999876 4433211 1138899999999999 9988654
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=123.09 Aligned_cols=105 Identities=19% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC----C-CCCeEEEEccCCCC--CCCCCCccE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG----L-KCSVEFEVADCTKK--TYPENSFDV 352 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~----~-~~~i~~~~~d~~~~--~~~~~~fD~ 352 (485)
...+.+|||||||+|.++..+++.. ..+|+++|+|+.+++.|++++.. + ..+++++.+|+.+. .+++++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4556799999999999999999875 46999999999999999998752 2 35899999998653 234578999
Q ss_pred EEEcccc--cccCC--HHHHHHHHHhcCCCCcEEEEE
Q 043471 353 IYSRDTI--LHIQD--KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 353 i~~~~~~--~~~~~--~~~~l~~~~~~LkpgG~l~i~ 385 (485)
|++...- +...+ ...++++++++|+|||++++.
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9996432 11111 478999999999999999997
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-13 Score=122.18 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=83.5
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCC----CC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSE----DS 120 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~----~~ 120 (485)
...++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++.. ...+++++++|+.+....+.+ ++
T Consensus 66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~ 145 (229)
T 2avd_A 66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT 145 (229)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence 3456789999999999999999986 5799999999999999998753 225899999998652101111 68
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
||+|++... ......+++++.++|+|||.+++.+...
T Consensus 146 ~D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 146 FDVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred ccEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 999998643 2225689999999999999999976543
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-12 Score=113.04 Aligned_cols=106 Identities=29% Similarity=0.352 Sum_probs=80.0
Q ss_pred HHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCC----------CEEEEEeCCHHHHHHHHHHhcCCCCCeEEE-EccC
Q 043471 273 KEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFD----------VHVVGIDLSINMISFALERAIGLKCSVEFE-VADC 340 (485)
Q Consensus 273 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~----------~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~-~~d~ 340 (485)
.++.+.+. ++++.+|||+|||+|.++..++++.+ .+|+|+|+|+.+ . ..++++. .+|+
T Consensus 11 ~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~-~~~~~~~~~~d~ 80 (196)
T 2nyu_A 11 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------P-LEGATFLCPADV 80 (196)
T ss_dssp HHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------C-CTTCEEECSCCT
T ss_pred HHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------c-CCCCeEEEeccC
Confidence 34444443 57889999999999999999999864 799999999842 1 1367888 8887
Q ss_pred CCCC--------CCCCCccEEEEccccccc----CCH-------HHHHHHHHhcCCCCcEEEEEecc
Q 043471 341 TKKT--------YPENSFDVIYSRDTILHI----QDK-------PALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 341 ~~~~--------~~~~~fD~i~~~~~~~~~----~~~-------~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
...+ +++++||+|++..++++. .+. ..+++++.++|||||++++..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 81 TDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp TSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 6643 335689999997655432 233 47899999999999999998653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-12 Score=112.04 Aligned_cols=106 Identities=20% Similarity=0.291 Sum_probs=80.8
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC---
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP--- 346 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~--- 346 (485)
++.++.+.+. ++++.+|||+|||+|.++..++++ +.+|+|+|+++.. . ..+++++++|+.+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~-~~~v~~~~~D~~~~~~~~~~ 80 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------E-IAGVRFIRCDIFKETIFDDI 80 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------C-CTTCEEEECCTTSSSHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------c-CCCeEEEEccccCHHHHHHH
Confidence 4455666654 578899999999999999999998 7899999999752 1 23799999999886421
Q ss_pred --------CCCccEEEEccccccc-----------CCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 347 --------ENSFDVIYSRDTILHI-----------QDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 347 --------~~~fD~i~~~~~~~~~-----------~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.++||+|++....... .....+++.+.++|||||.+++..+
T Consensus 81 ~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 81 DRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1489999996543211 1135678999999999999998754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.8e-12 Score=123.27 Aligned_cols=134 Identities=22% Similarity=0.205 Sum_probs=99.8
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC--cEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 112 (485)
+.+.....++... ..++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.... ++++++++|+.+
T Consensus 202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~- 279 (373)
T 3tm4_A 202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQ- 279 (373)
T ss_dssp CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGG-
T ss_pred ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhh-
Confidence 4455556666666 67788999999999999999999877 9999999999999999875322 479999999998
Q ss_pred CCCCCCCCeeEEEhhhhhhccC------hHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHH
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLS------DKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKV 186 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (485)
+++++++||+|+++-.+.... ...+..+++++.++| +|+.++++ . .++.+.+.
T Consensus 280 -~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~-~------------------~~~~~~~~ 338 (373)
T 3tm4_A 280 -LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT-T------------------EKKAIEEA 338 (373)
T ss_dssp -GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE-S------------------CHHHHHHH
T ss_pred -CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE-C------------------CHHHHHHH
Confidence 556678999999975433211 111467889999989 44444442 2 35667778
Q ss_pred hhhcceec
Q 043471 187 FKECQIQD 194 (485)
Q Consensus 187 ~~~~~~~~ 194 (485)
+.+.|+..
T Consensus 339 ~~~~G~~~ 346 (373)
T 3tm4_A 339 IAENGFEI 346 (373)
T ss_dssp HHHTTEEE
T ss_pred HHHcCCEE
Confidence 88888753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=122.06 Aligned_cols=109 Identities=19% Similarity=0.192 Sum_probs=85.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCee
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
...++.+|||||||+|..+..+++. ..+|+++|+++.+++.|+++... .++++++.+|+.+. ++..+++||
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD 153 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-LENVTNTYD 153 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-HHHCCSCEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH-HHhCCCCce
Confidence 3456789999999999999999987 46999999999999999998753 36899999998763 112257899
Q ss_pred EEEhhhhhhccChHHH--HHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDKEV--EKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|++....++.+.... .++++++.++|+|||.+++...
T Consensus 154 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 154 VIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9998654333222212 5899999999999999998643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.9e-13 Score=124.71 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=82.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
..++.+|||||||+|.++..+++.. .+|+++|+++.+++.|+++... .++++++.+|+.+. ++..+++||+
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~-l~~~~~~fD~ 171 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MKQNQDAFDV 171 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HHTCSSCEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH-HhhCCCCceE
Confidence 4567899999999999999999873 6899999999999999987532 36899999998652 2224578999
Q ss_pred EEhhhhhhccChH--HHHHHHHHHHhhcccCcEEEEEecc
Q 043471 124 MFSNWLLMYLSDK--EVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 124 v~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|++....+..+.. ...++++++.++|+|||.+++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 9986543322211 1357999999999999999997533
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=124.43 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=83.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++.+|||||||+|.++..+++. +.+|+++|+|+.+++.|+++... .++++++++|+.+. ++..+++||+|
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fDvI 193 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF-LENVTNTYDVI 193 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH-HHHCCSCEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH-HhhcCCCceEE
Confidence 45689999999999999999987 46999999999999999998654 35899999998652 11235789999
Q ss_pred EhhhhhhccChHHH--HHHHHHHHhhcccCcEEEEEec
Q 043471 125 FSNWLLMYLSDKEV--EKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++...-+.-+.... .++++++.++|+|||.+++...
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 98643221111111 5899999999999999999643
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=114.02 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=78.9
Q ss_pred HHhccCC-CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC------CC
Q 043471 45 EVLSLLP-PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT------FS 117 (485)
Q Consensus 45 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~------~~ 117 (485)
++.+.+. ..++.+|||+|||+|..+..+++++.+|+|+|+++.. ..++++++++|+.+.... +.
T Consensus 15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHHHhh
Confidence 4444443 3568899999999999999999998899999999852 235899999999874211 11
Q ss_pred ---CCCeeEEEhhhhhhccC---------hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 118 ---EDSVDMMFSNWLLMYLS---------DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 118 ---~~~~D~v~~~~~~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.++||+|+|........ ......+++.+.++|||||.+++...
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 14899999965332111 11245788999999999999998654
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=125.51 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=84.1
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC-------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH-------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++... .++++++.+|+.+. ++..+++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LERTEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HHHCCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH-HHhcCCCccE
Confidence 45689999999999999999987 56899999999999999987531 36899999998763 2223678999
Q ss_pred EEhhhhhhc---cChHH--HHHHHHHHHhhcccCcEEEEEe
Q 043471 124 MFSNWLLMY---LSDKE--VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 124 v~~~~~~~~---~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|++....++ .+... ..++++++.++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 999765443 11111 2589999999999999999964
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.4e-12 Score=119.43 Aligned_cols=105 Identities=24% Similarity=0.272 Sum_probs=83.4
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-C-----CC
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT-F-----SE 118 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~-~-----~~ 118 (485)
...++.+|||||||+|..+..+++. +.+|+++|+++.+++.|+++... .++++++++|+.+. ++ + ++
T Consensus 67 ~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~-l~~l~~~~~~~ 145 (237)
T 3c3y_A 67 KLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA-LDNLLQGQESE 145 (237)
T ss_dssp HHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHHHHHSTTCT
T ss_pred HhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-HHHHHhccCCC
Confidence 3456779999999999999999987 67999999999999999987532 23699999998652 11 1 25
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++||+|++... ......+++++.++|+|||++++....
T Consensus 146 ~~fD~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 146 GSYDFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp TCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CCcCEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 78999997632 223678999999999999999986543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-12 Score=114.29 Aligned_cols=94 Identities=22% Similarity=0.351 Sum_probs=76.5
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+....+.+++.+...++.+|||||||+|.++..|++++.+|+|+|+|+.+++.++++....++++++++|+.+.+ ++
T Consensus 14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~--~~ 91 (244)
T 1qam_A 14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK--FP 91 (244)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC--CC
T ss_pred CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC--cc
Confidence 5667788899999888899999999999999999999999999999999999999998765568999999998844 44
Q ss_pred C-CCeeEEEhhhhhhccCh
Q 043471 118 E-DSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 118 ~-~~~D~v~~~~~~~~~~~ 135 (485)
+ ..| .|+++. .+++..
T Consensus 92 ~~~~~-~vv~nl-Py~~~~ 108 (244)
T 1qam_A 92 KNQSY-KIFGNI-PYNIST 108 (244)
T ss_dssp SSCCC-EEEEEC-CGGGHH
T ss_pred cCCCe-EEEEeC-CcccCH
Confidence 3 345 455543 344433
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=119.94 Aligned_cols=100 Identities=21% Similarity=0.220 Sum_probs=76.0
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLT 115 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~ 115 (485)
.++.....+++.+...++.+|||||||+|.++..|++++.+|+|+|+++.+++.++++.. ..++++++++|+.+.+
T Consensus 26 ~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-- 103 (299)
T 2h1r_A 26 KNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-- 103 (299)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC--
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC--
Confidence 466777888888888888999999999999999999999999999999999999998752 2368999999998743
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHH
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLA 142 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l 142 (485)
+ ++||+|+++.. +++..+....++
T Consensus 104 ~--~~~D~Vv~n~p-y~~~~~~~~~ll 127 (299)
T 2h1r_A 104 F--PKFDVCTANIP-YKISSPLIFKLI 127 (299)
T ss_dssp C--CCCSEEEEECC-GGGHHHHHHHHH
T ss_pred c--ccCCEEEEcCC-cccccHHHHHHH
Confidence 2 48999999754 444443333343
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-11 Score=109.88 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=102.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.+..+|||||||+|.++..++... ..+|+++|+++.|++.+++++..++.+..+.+.|....+ +.++||+|++.-+++
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 446699999999999999888774 679999999999999999999877777889999998766 458899999999999
Q ss_pred ccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 361 HIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 361 ~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
|+++ ....+ ++.+.|+|+|.++-... +.-......+... -...|.+.+.+.|..+-.++
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~-ksl~Grs~gm~~~---------Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFPT-KSLGQRSKGMFQN---------YSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEEC-C-------CHHHH---------HHHHHHHHHHHHTCCEEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEeccc-hhhcCCCcchhhH---------HHHHHHHHHHhcCCceeeee
Confidence 9954 33455 89999999998766543 1111111111111 14578888888888655443
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-12 Score=117.12 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=85.8
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC--CCCC----CCc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK--TYPE----NSF 350 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~--~~~~----~~f 350 (485)
..++.+|||+|||+|..+..+++.+ +.+++++|+++.+++.|++++. +...++++..+|+.+. .++. ++|
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 4567799999999999999999875 5799999999999999999875 3345899999987543 1111 689
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 147 D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 147 DVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred cEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 99999654 346788999999999999999997654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=122.74 Aligned_cols=110 Identities=18% Similarity=0.273 Sum_probs=83.2
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC--C-CCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH--F-ENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~--~-~~~~~~~~d~~~~~~~~~~~ 119 (485)
..+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|+++... . .+++++++|+.+. + + +
T Consensus 113 ~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~--~-~ 188 (284)
T 1nv8_A 113 ELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-F--K-E 188 (284)
T ss_dssp HHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-G--G-G
T ss_pred HHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-c--c-c
Confidence 34455444346679999999999999999998 77999999999999999987532 2 2599999999762 2 2 5
Q ss_pred Ce---eEEEhhh------------hhhccChHH------HHHHHHHHH-hhcccCcEEEEE
Q 043471 120 SV---DMMFSNW------------LLMYLSDKE------VEKLAERMV-KWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~---D~v~~~~------------~~~~~~~~~------~~~~l~~~~-~~L~pgG~l~~~ 158 (485)
+| |+|+++- +. |-+... ...+++++. +.|+|||.+++.
T Consensus 189 ~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 189 KFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp GTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred ccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 78 9999971 11 222210 126899999 999999999984
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-12 Score=123.44 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++.+|||||||+|..+..+++. ..+|+++|+++.+++.|+++... .++++++.+|+.+. ++..+++||+|
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~-l~~~~~~fD~I 185 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKNHKNEFDVI 185 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHHCTTCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH-HHhcCCCceEE
Confidence 45679999999999999999987 46999999999999999998753 35899999998752 22245789999
Q ss_pred EhhhhhhccChHHH--HHHHHHHHhhcccCcEEEEEe
Q 043471 125 FSNWLLMYLSDKEV--EKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 125 ~~~~~~~~~~~~~~--~~~l~~~~~~L~pgG~l~~~~ 159 (485)
++...-+..+.... .++++++.++|+|||.+++..
T Consensus 186 i~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 98653222222111 689999999999999999964
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-13 Score=126.01 Aligned_cols=118 Identities=19% Similarity=0.198 Sum_probs=91.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+......+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++....++++++++|+.+. +++
T Consensus 13 ~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~--~~~ 90 (245)
T 1yub_A 13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQF--QFP 90 (245)
T ss_dssp CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTT--TCC
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhc--Ccc
Confidence 456777889999988889999999999999999999999999999999999999888765446899999999884 444
Q ss_pred C-CCeeEEEhhhhhhccChHHHHH----------HH----HHHHhhcccCcEEEEEe
Q 043471 118 E-DSVDMMFSNWLLMYLSDKEVEK----------LA----ERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 118 ~-~~~D~v~~~~~~~~~~~~~~~~----------~l----~~~~~~L~pgG~l~~~~ 159 (485)
+ ++| .|+++- .++........ ++ +.+.|+|+|||.+.+..
T Consensus 91 ~~~~f-~vv~n~-Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 91 NKQRY-KIVGNI-PYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CSSEE-EEEEEC-CSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cCCCc-EEEEeC-CccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 3 678 666652 23333222222 33 66899999999987743
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.4e-12 Score=118.81 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=83.7
Q ss_pred CEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-CCCeEEEEccCCCC--CCCCCCccEEEEccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-KCSVEFEVADCTKK--TYPENSFDVIYSRDTIL 360 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-~~~i~~~~~d~~~~--~~~~~~fD~i~~~~~~~ 360 (485)
.+|||||||+|.++..+++.+ +.+++++|+++.+++.|++++... ..+++++.+|+.+. .+++++||+|++.....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 499999999999999999855 679999999999999999998643 35899999998664 34467899999964322
Q ss_pred cc-C---CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 361 HI-Q---DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 361 ~~-~---~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.. + ...+++++++++|+|||.+++...
T Consensus 171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 21 1 136899999999999999998864
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-12 Score=118.71 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=77.7
Q ss_pred HHhccCCC--CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCC-CCCC
Q 043471 45 EVLSLLPP--YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSP-DLTF 116 (485)
Q Consensus 45 ~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~-~~~~ 116 (485)
.+++.+.. .++.+|||+|||+|.++..++++ +.+|+|+|+|+.|++.|+++... ..+++++++|+.+. .-++
T Consensus 54 ~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 133 (254)
T 2h00_A 54 DLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL 133 (254)
T ss_dssp HHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS
T ss_pred HHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhh
Confidence 34444443 25779999999999999999876 67999999999999999987532 23599999998762 1133
Q ss_pred C---CCCeeEEEhhhhhhccC-h------------HHHHHHHHHHHhhcccCcEEEEE
Q 043471 117 S---EDSVDMMFSNWLLMYLS-D------------KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 117 ~---~~~~D~v~~~~~~~~~~-~------------~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+ +++||+|+++-.+++.. + .....++.+++++|||||.+.+.
T Consensus 134 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 134 KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 3 26899999985444332 0 01234567888899999987664
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=124.26 Aligned_cols=117 Identities=20% Similarity=0.221 Sum_probs=91.1
Q ss_pred HHcCCC--CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC-CCCCc
Q 043471 277 AKLDLK--PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY-PENSF 350 (485)
Q Consensus 277 ~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~-~~~~f 350 (485)
..+... ++.+|||+|||+|..+..+++.. +..|+++|+|+.+++.+++++...+ .++.+.++|+..++. .+++|
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~f 188 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMF 188 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCE
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccC
Confidence 344555 89999999999999999999876 3699999999999999999986433 378999999987653 35789
Q ss_pred cEEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCCCC
Q 043471 351 DVIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSFGT 393 (485)
Q Consensus 351 D~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 393 (485)
|+|++. .++.+.++ ...+|+++.++|||||++++++.......
T Consensus 189 D~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~E 253 (479)
T 2frx_A 189 DAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEE 253 (479)
T ss_dssp EEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTT
T ss_pred CEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCccc
Confidence 999983 22333222 24689999999999999999876544433
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-12 Score=118.34 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=85.1
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDV 352 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~ 352 (485)
...++.+|||||||+|.++..+++.. ..+++++|+++.+++.|++++... ..+++++.+|+.+. +..+++||+
T Consensus 75 ~~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 75 VSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp TSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred cCCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 34456799999999999999999875 469999999999999999988643 35899999998653 222578999
Q ss_pred EEEcccccccC--CH--HHHHHHHHhcCCCCcEEEEEe
Q 043471 353 IYSRDTILHIQ--DK--PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 353 i~~~~~~~~~~--~~--~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|++.....+.+ .. .+++++++++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 99954332222 11 689999999999999999884
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.1e-12 Score=119.11 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=85.0
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~ 115 (485)
+-.+....+.+++.+...++.+|||||||+|.++..|++++.+|+|+|+++.+++.++++....++++++++|+.+. +
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~--~ 109 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKV--D 109 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTS--C
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhC--C
Confidence 33566788899999998899999999999999999999999999999999999999998875456899999999884 4
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHH
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLA 142 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l 142 (485)
+++.+||+|+++. .+++..+....++
T Consensus 110 ~~~~~fD~Iv~Nl-Py~is~pil~~lL 135 (295)
T 3gru_A 110 LNKLDFNKVVANL-PYQISSPITFKLI 135 (295)
T ss_dssp GGGSCCSEEEEEC-CGGGHHHHHHHHH
T ss_pred cccCCccEEEEeC-cccccHHHHHHHH
Confidence 5667899999874 4455543333333
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-12 Score=121.12 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=81.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~ 354 (485)
..+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++... ..+++++.+|+.+. +..+++||+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 345799999999999999999875 469999999999999999998643 45799999998652 22457899999
Q ss_pred Eccccccc-CCH----HHHHHHHHhcCCCCcEEEEEe
Q 043471 355 SRDTILHI-QDK----PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 355 ~~~~~~~~-~~~----~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+... .+. +.. ..++++++++|+|||.+++..
T Consensus 187 ~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8553 232 111 688999999999999999874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=5.9e-12 Score=119.33 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=83.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC----C-CCCeEEEEccCCC-CCCCCCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG----L-KCSVEFEVADCTK-KTYPENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~----~-~~~i~~~~~d~~~-~~~~~~~fD~i 353 (485)
...+.+|||||||+|.++..+++.. ..+++++|+++.+++.|++++.. + ..+++++.+|+.+ ++..+++||+|
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 3456799999999999999999875 36999999999999999998743 2 4589999999865 23345789999
Q ss_pred EEcccccccC----CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 354 YSRDTILHIQ----DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 354 ~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++.......+ ...+++++++++|+|||.+++...
T Consensus 173 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 210 (304)
T 2o07_A 173 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 210 (304)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence 9965432211 235789999999999999998753
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.6e-12 Score=115.87 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-----CCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-----LKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-----~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
..+.+|||||||+|.++..+++. +.+++++|+++.+++.|++++.. ...+++++.+|+.+.. ++||+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence 34579999999999999999988 58999999999999999887643 1357999999988754 789999986
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
..++..++++++++|+|||.+++..
T Consensus 147 -----~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 -----QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp -----SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred -----CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3466779999999999999999863
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-12 Score=120.82 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=85.0
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-----C-CCCeEEEEccCCCC-CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-----L-KCSVEFEVADCTKK-TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-----~-~~~i~~~~~d~~~~-~~~~~~fD~i 353 (485)
..+.+|||||||+|.++..+++.. ..+++++|+++.+++.|++++.. + ..+++++.+|+.+. +..+++||+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 455799999999999999999875 46999999999999999998742 2 35899999998763 3346789999
Q ss_pred EEcccccc-cCC------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDTILH-IQD------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~~~~-~~~------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++....++ ... ..+++++++++|||||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99765543 111 4789999999999999999874
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.3e-12 Score=124.90 Aligned_cols=120 Identities=20% Similarity=0.260 Sum_probs=92.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--c-CcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--A-GHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~-~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~ 118 (485)
..+...+...++.+|||+|||+|..+..+++. + .+|+|+|+|+.+++.++++.. ...+++++++|+...+..+++
T Consensus 249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~ 328 (450)
T 2yxl_A 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328 (450)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence 33445566778899999999999999999986 3 689999999999999988753 234799999999874322455
Q ss_pred CCeeEEEh------hhhhhccChHH--------------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 119 DSVDMMFS------NWLLMYLSDKE--------------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 119 ~~~D~v~~------~~~~~~~~~~~--------------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
++||+|++ .+++++.++.. ...+++++.++|||||.+++++.+..
T Consensus 329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 78999995 34455444321 15789999999999999999877543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=120.19 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=81.6
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHc----C--------CCCCeEEEEeeccCCCCCCCCC
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVN----G--------HFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~----~--------~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
.++.+|||||||+|.++..+++.+ .+|+++|+++.+++.|+++. + ..++++++.+|+.+. ++. ++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~-l~~-~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-IKN-NR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-HHH-CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHH-hcc-cC
Confidence 457899999999999999999884 48999999999999999886 1 135899999998652 112 57
Q ss_pred CeeEEEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEEec
Q 043471 120 SVDMMFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+||+|++....+..+... ..++++++.++|+|||.+++...
T Consensus 152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 899999865432222111 25799999999999999999643
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=120.97 Aligned_cols=106 Identities=16% Similarity=0.079 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++.+|||||||+|..+..+++. ..+|+++|+++.+++.|+++... .++++++.+|+.+. ++..+++||+|
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~I 167 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-VRKFKNEFDVI 167 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-GGGCSSCEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-HhhCCCCceEE
Confidence 45689999999999999999987 46999999999999999987521 36899999998653 22235789999
Q ss_pred EhhhhhhccChH---HHHHHHHHHHhhcccCcEEEEEe
Q 043471 125 FSNWLLMYLSDK---EVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 125 ~~~~~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
++...-++.... ...++++++.++|+|||.+++..
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 986432212211 02589999999999999999964
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.4e-12 Score=113.35 Aligned_cols=100 Identities=24% Similarity=0.343 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh-c----------CcEEEEeCChHHHHHHHHHcCCCCCeEEE-EeeccCCCC-----
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK-A----------GHVIALDFIDSVIKKNEEVNGHFENVKFM-CADVTSPDL----- 114 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~-~----------~~v~giD~s~~~~~~a~~~~~~~~~~~~~-~~d~~~~~~----- 114 (485)
..++.+|||+|||+|.++..++++ + .+|+|+|+|+.+ ...+++++ ++|+...+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence 356789999999999999999987 4 689999999842 12578899 888765321
Q ss_pred -CCCCCCeeEEEhhhhhhc----cChHH-----HHHHHHHHHhhcccCcEEEEEec
Q 043471 115 -TFSEDSVDMMFSNWLLMY----LSDKE-----VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 -~~~~~~~D~v~~~~~~~~----~~~~~-----~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.+++++||+|+|..+++. ..+.. ...+++++.++|+|||.+++...
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 134568999998664443 22211 14789999999999999999754
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=115.58 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=85.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C-C-----CCCCc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T-Y-----PENSF 350 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~-~-----~~~~f 350 (485)
.++.+|||||||+|..+..+++.. +.+++++|+++.+++.|++++. ++..++++..+|+.+. + + +.++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 456799999999999999999875 5799999999999999999876 4445799999988653 1 1 25789
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|++... ..+...+++++.++|+|||.+++.+..
T Consensus 149 D~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99998643 246788999999999999999987643
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-12 Score=119.39 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
.++.+|||||||+|.++..+++. + .+|+++|+++.+++.|+++.. ..++++++.+|+.+. ++..+++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~-l~~~~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAKSENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHTCCSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH-HhhCCCCeeEE
Confidence 45789999999999999999987 4 699999999999999998751 236899999998652 22235789999
Q ss_pred EhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEEe
Q 043471 125 FSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 125 ~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
++....++.+... ..++++++.++|+|||.+++..
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9965432222100 1479999999999999999964
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=116.17 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc----CC-CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI----GL-KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~-~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
.+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++. ++ ..+++++.+|+.+. +..+++||+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 46799999999999999999875 3699999999999999999873 23 35899999998652 333578999999
Q ss_pred cccccccCC----HHHHHHHHHhcCCCCcEEEEEe
Q 043471 356 RDTILHIQD----KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 356 ~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.......+. ..+++++++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 654322211 3689999999999999999874
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-12 Score=126.04 Aligned_cols=115 Identities=19% Similarity=0.212 Sum_probs=89.9
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-CCCCCccE
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-YPENSFDV 352 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~ 352 (485)
...+...++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++...+..+.+.++|+.+++ +..++||+
T Consensus 94 a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~ 173 (464)
T 3m6w_A 94 GVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHR 173 (464)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEE
T ss_pred HHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCE
Confidence 344567889999999999999999999876 269999999999999999998744433888888887654 23578999
Q ss_pred EEEc------ccccccCCH----------------HHHHHHHHhcCCCCcEEEEEecccC
Q 043471 353 IYSR------DTILHIQDK----------------PALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 353 i~~~------~~~~~~~~~----------------~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|++. .++.+-++. ..+++++.++|||||++++++....
T Consensus 174 Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 174 VLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp EEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred EEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 9962 223332332 6789999999999999999865443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=112.86 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=96.3
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVN---GHFENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~~~~~~~ 115 (485)
..++.++.+.+ .+|.+|||+|||+|.+++.++++| .+|+++|++|.+++.++++. +-.++++++++|+.++.
T Consensus 113 ~~er~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-- 188 (278)
T 3k6r_A 113 VKERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-- 188 (278)
T ss_dssp HHHHHHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--
T ss_pred HHHHHHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--
Confidence 34566666664 458899999999999999999987 58999999999999998864 33357999999998743
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcce
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
..+.||.|+++.. +. ...++..+.++|+|||+|.+.+...... ..-...+.+++..++.|+
T Consensus 189 -~~~~~D~Vi~~~p--~~----~~~~l~~a~~~lk~gG~ih~~~~~~e~~---------~~~~~~e~i~~~~~~~g~ 249 (278)
T 3k6r_A 189 -GENIADRILMGYV--VR----THEFIPKALSIAKDGAIIHYHNTVPEKL---------MPREPFETFKRITKEYGY 249 (278)
T ss_dssp -CCSCEEEEEECCC--SS----GGGGHHHHHHHEEEEEEEEEEEEEEGGG---------TTTTTHHHHHHHHHHTTC
T ss_pred -cccCCCEEEECCC--Cc----HHHHHHHHHHHcCCCCEEEEEeeecccc---------cchhHHHHHHHHHHHcCC
Confidence 4678999987631 21 2257888889999999988765432110 001133556666666665
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6e-12 Score=119.18 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeC----CHHHHHHHHHHhcCC-CCCeEEEEc-cCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDL----SINMISFALERAIGL-KCSVEFEVA-DCTKKT 344 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~----s~~~~~~a~~~~~~~-~~~i~~~~~-d~~~~~ 344 (485)
.+..+++...++++.+|||+|||+|.++..++++ .+|+|+|+ ++.+++.+. .... ..++.+..+ |+..++
T Consensus 70 KL~~i~~~~~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~ 145 (305)
T 2p41_A 70 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP 145 (305)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC
T ss_pred HHHHHHHcCCCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC
Confidence 3445566645678899999999999999999988 48999999 565442211 1111 136888888 887765
Q ss_pred CCCCCccEEEEccccc---ccCCHH---HHHHHHHhcCCCCcEEEEEec
Q 043471 345 YPENSFDVIYSRDTIL---HIQDKP---ALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~---~~~~~~---~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.++||+|+|..++. +..+.. .+|+.+.++|||||.+++..+
T Consensus 146 --~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 146 --PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp --CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred --cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 57899999976653 222222 578999999999999988654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-12 Score=122.67 Aligned_cols=110 Identities=10% Similarity=0.046 Sum_probs=76.9
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeC----ChHHHHHHHHHcCCCCCeEEEEe-eccCCCCCCCCCC
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDF----IDSVIKKNEEVNGHFENVKFMCA-DVTSPDLTFSEDS 120 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~~~ 120 (485)
+++.....++.+|||||||+|.++..++++ .+|+|+|+ ++.+++.++......+++.++++ |+.. + +.++
T Consensus 74 i~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~--l--~~~~ 148 (305)
T 2p41_A 74 FVERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFF--I--PPER 148 (305)
T ss_dssp HHHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTT--S--CCCC
T ss_pred HHHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccccc--C--CcCC
Confidence 344433456789999999999999999998 68999999 66544221111001147999998 8876 3 3468
Q ss_pred eeEEEhhhhhh---ccChHH-HHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNWLLM---YLSDKE-VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~~~~---~~~~~~-~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
||+|+|..++. +..+.. ...++..+.++|||||.+++...
T Consensus 149 fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 149 CDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99999976653 222211 12588999999999999988543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.9e-12 Score=119.85 Aligned_cols=105 Identities=19% Similarity=0.190 Sum_probs=83.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~ 354 (485)
.++.+|||||||+|.++..+++.. +.+|+++|+|+.+++.|++++... ..+++++.+|+.+. +..+++||+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 345799999999999999999875 579999999999999999997642 35799999997653 22357899999
Q ss_pred Ecccccc--cCC--HHHHHHHHHhcCCCCcEEEEEe
Q 043471 355 SRDTILH--IQD--KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 355 ~~~~~~~--~~~--~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+...-.. ... ..+++++++++|+|||++++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643111 111 1789999999999999999974
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-12 Score=124.66 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=86.6
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC--CC-C-CeEEEEeeccCCC-
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG--HF-E-NVKFMCADVTSPD- 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~--~~-~-~~~~~~~d~~~~~- 113 (485)
....+.++..+. .++.+|||+|||+|.+++.+++.++ +|+|+|+|+.+++.|+++.. .. + +++++++|+.+..
T Consensus 199 ~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~ 277 (385)
T 2b78_A 199 QRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFK 277 (385)
T ss_dssp GHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH
Confidence 333334443332 4678999999999999999999765 89999999999999998643 22 2 8999999987621
Q ss_pred -CCCCCCCeeEEEhhhhh-----hccCh--HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 114 -LTFSEDSVDMMFSNWLL-----MYLSD--KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 114 -~~~~~~~~D~v~~~~~~-----~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.....+||+|++.-.. .+..+ ..+.+++..+.++|+|||+++++...
T Consensus 278 ~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 278 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 11113589999984221 12221 22567888899999999999997653
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=119.83 Aligned_cols=115 Identities=21% Similarity=0.241 Sum_probs=90.3
Q ss_pred HHHHHHc-CCCCCCEEEEECCCCChhHHHHhhcCC------CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC
Q 043471 273 KEFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKFD------VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY 345 (485)
Q Consensus 273 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~ 345 (485)
..+++.+ ...++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.++...+.++.+.++|.... .
T Consensus 119 ~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~-~ 197 (344)
T 2f8l_A 119 AYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN-L 197 (344)
T ss_dssp HHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC-C
T ss_pred HHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCc-c
Confidence 4445444 345678999999999999998887652 6899999999999999998753333688999998764 3
Q ss_pred CCCCccEEEEcccccccCCH------------------HHHHHHHHhcCCCCcEEEEEecc
Q 043471 346 PENSFDVIYSRDTILHIQDK------------------PALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~------------------~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+.++||+|+++..+.+++.. ..+++.+.+.|+|||++++..+.
T Consensus 198 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 198 LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 45789999999887666432 25799999999999999988643
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=8.5e-12 Score=122.18 Aligned_cols=118 Identities=14% Similarity=0.209 Sum_probs=84.2
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
..+.++..+. .+|.+|||+|||+|.+++.+++.|+.|+|+|+|+.+++.|+++....+ ..++.++|+.+. ++...+.
T Consensus 203 ~~r~~l~~~~-~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~-l~~~~~~ 280 (393)
T 4dmg_A 203 ENRRLFEAMV-RPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPT-LRGLEGP 280 (393)
T ss_dssp HHHHHHHTTC-CTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHH-HHTCCCC
T ss_pred HHHHHHHHHh-cCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHH-HHHhcCC
Confidence 3344444332 258899999999999999999998889999999999999998743211 235778888763 1111344
Q ss_pred eeEEEhhhhhhccC--------hHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 121 VDMMFSNWLLMYLS--------DKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 121 ~D~v~~~~~~~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
||+|++.-.. +.. .....+++..+.++|+|||++++.+...
T Consensus 281 fD~Ii~dpP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 281 FHHVLLDPPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp EEEEEECCCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCEEEECCCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999986321 111 1225688999999999999999766543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=117.34 Aligned_cols=104 Identities=20% Similarity=0.154 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc----CC-CCCeEEEEccCCCC-CCCCCCccEEEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI----GL-KCSVEFEVADCTKK-TYPENSFDVIYS 355 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~----~~-~~~i~~~~~d~~~~-~~~~~~fD~i~~ 355 (485)
.+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++. +. ..+++++.+|+.+. +..+++||+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 45799999999999999999875 4699999999999999999873 22 35899999997652 333578999998
Q ss_pred cccccccC-----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 356 RDTILHIQ-----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 356 ~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...-.++. ...+++++++++|+|||.+++..
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 54321121 23789999999999999999974
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=122.95 Aligned_cols=126 Identities=16% Similarity=0.245 Sum_probs=94.0
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~ 114 (485)
.+......+...+...++.+|||+|||+|..+..+++.. .+|+|+|+|+.+++.++++....+ ++.++++|+...+.
T Consensus 230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~ 309 (429)
T 1sqg_A 230 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ 309 (429)
T ss_dssp ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHH
T ss_pred eeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchh
Confidence 333344445556677888999999999999999999874 699999999999999988754222 58999999887421
Q ss_pred CCCCCCeeEEEh------hhhhhccChHH--------------HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 115 TFSEDSVDMMFS------NWLLMYLSDKE--------------VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 115 ~~~~~~~D~v~~------~~~~~~~~~~~--------------~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.+++++||+|++ .+++.+.++.. ...+++++.++|||||++++++.+..
T Consensus 310 ~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 310 WCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp HHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred hcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 145578999985 23444444311 14889999999999999999876543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-12 Score=115.75 Aligned_cols=112 Identities=10% Similarity=0.194 Sum_probs=84.6
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC-
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE- 347 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~- 347 (485)
......+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+++.+++.++++.... .+++++++|+.++++++
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~-~~v~~~~~D~~~~~~~~~ 93 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQFKFPKN 93 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGGCCCCSS
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhccC-CCeEEEEChHHhCCcccC
Confidence 356778888888888999999999999999999988 579999999999999999988643 48999999999988764
Q ss_pred CCccEEEEcccc-----------cccCCHHHHH----HHHHhcCCCCcEEE
Q 043471 348 NSFDVIYSRDTI-----------LHIQDKPALF----KSFFKWLKPGGTVL 383 (485)
Q Consensus 348 ~~fD~i~~~~~~-----------~~~~~~~~~l----~~~~~~LkpgG~l~ 383 (485)
..| .|+++... +|......++ +.+.|+++|+|.+.
T Consensus 94 ~~~-~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 94 QSY-KIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CCC-EEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred CCe-EEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 455 45554322 2222222333 34677777777643
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.8e-11 Score=107.73 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
.++.+|||||||+|.++..+. .+..|+|+|+++.+++.+++++...+.+..+.++|....+++ ++||+|++.-++||
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~-~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPA-EAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCC-CBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCC-CCcchHHHHHHHHH
Confidence 456799999999999999887 367999999999999999999876667889999999988765 58999999999998
Q ss_pred cC--CHHHHHHHHHhcCCCCcEEEEE
Q 043471 362 IQ--DKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 362 ~~--~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
++ .+...+ ++.+.|+++|.++-.
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSF 205 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEc
Confidence 84 233444 888899999776554
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=119.22 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=85.4
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-CCCCCcc
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-YPENSFD 351 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-~~~~~fD 351 (485)
..++..+ .+++.+|||+|||+|.++..+++. ++.|+++|+|+.+++.|++++...+....+.++|+.+.. ...+.||
T Consensus 205 r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD 282 (393)
T 4dmg_A 205 RRLFEAM-VRPGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFH 282 (393)
T ss_dssp HHHHHTT-CCTTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEE
T ss_pred HHHHHHH-hcCCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCC
Confidence 3444443 456889999999999999999987 778999999999999999998633333456688876631 1134499
Q ss_pred EEEEcccccc---------cCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 352 VIYSRDTILH---------IQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~~~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|++...... ..+...+++.+.++|+|||++++.+..
T Consensus 283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999654321 134568899999999999999977543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-11 Score=116.69 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=81.4
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC------------CCCeEEEEccCCCC-CCCCC
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL------------KCSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~------------~~~i~~~~~d~~~~-~~~~~ 348 (485)
.++.+|||||||+|.++..+++....+++++|+++.+++.|++++ .. ..+++++.+|+.+. +. ++
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 456799999999999999999873359999999999999999987 33 35799999987552 22 57
Q ss_pred CccEEEEcccccccC--C--HHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQ--D--KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~--~--~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+||+|++.......+ . ..+++++++++|+|||.+++..
T Consensus 152 ~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 899999965432111 1 3778999999999999999874
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-13 Score=126.84 Aligned_cols=114 Identities=17% Similarity=0.249 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC-C
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE-N 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~-~ 348 (485)
.....+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++.. ...+++++++|+.+.+++. +
T Consensus 16 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~-~~~~v~~~~~D~~~~~~~~~~ 93 (245)
T 1yub_A 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK-LNTRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT-TCSEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc-cCCceEEEECChhhcCcccCC
Confidence 45678888888888999999999999999999988 5899999999999999988765 2347999999999988764 6
Q ss_pred CccEEEEccc-----------ccccCCHHHHH----HHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDT-----------ILHIQDKPALF----KSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~-----------~~~~~~~~~~l----~~~~~~LkpgG~l~i~~ 386 (485)
+| .|+++.. +.|..+...++ +.+.|+|+|||.+.+..
T Consensus 94 ~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 94 RY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred Cc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 78 6666532 22333444555 77999999999987764
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-11 Score=109.81 Aligned_cols=100 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
..+.+|||||||+|.++..++ .+..|+|+|+++.+++.+++.... ..+.++.++|....+ +.++||+|+++-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~---~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP---PAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC---CCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC---CCCCcchHHHHHHHH
Confidence 457799999999999999988 667999999999999999998532 257899999988633 346999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
|+.+......+ ++...|+++|.++-
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVs 204 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVS 204 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEE
Confidence 99766544444 88889999976544
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3e-11 Score=112.78 Aligned_cols=117 Identities=15% Similarity=0.124 Sum_probs=86.0
Q ss_pred cCCCCCCEEEEECCCC------ChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEE-EEccCCCCCCCCCC
Q 043471 279 LDLKPGQKVLDVGCGI------GGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEF-EVADCTKKTYPENS 349 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~------G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~-~~~d~~~~~~~~~~ 349 (485)
+.++++.+|||+|||+ |. ..+++.. +.+|+|+|+|+. + .++++ +++|+.+.+++ ++
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v----~~v~~~i~gD~~~~~~~-~~ 123 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V----SDADSTLIGDCATVHTA-NK 123 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B----CSSSEEEESCGGGCCCS-SC
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C----CCCEEEEECccccCCcc-Cc
Confidence 4678899999999955 55 4445544 369999999998 1 26888 99999987764 78
Q ss_pred ccEEEEcccccc-----------cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHH
Q 043471 350 FDVIYSRDTILH-----------IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 350 fD~i~~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (485)
||+|+++...+. ......+++++.++|||||++++..+.. ....++.++
T Consensus 124 fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------------------~~~~~l~~~ 183 (290)
T 2xyq_A 124 WDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------------------SWNADLYKL 183 (290)
T ss_dssp EEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--------------------SCCHHHHHH
T ss_pred ccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------------CCHHHHHHH
Confidence 999999643221 1123578999999999999999975322 112467788
Q ss_pred HHhCCCeEEEEe
Q 043471 419 LKDAGFVDIIAE 430 (485)
Q Consensus 419 l~~aGf~~~~~~ 430 (485)
+++.||..+.+.
T Consensus 184 l~~~GF~~v~~~ 195 (290)
T 2xyq_A 184 MGHFSWWTAFVT 195 (290)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHcCCcEEEEE
Confidence 888899876654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=114.30 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
...+.+|||||||+|..+..+++.+.+|+++|+++.+++.|+++... .++++++.+|+... . ++||+|+
T Consensus 70 ~~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~--~---~~fD~Ii 144 (262)
T 2cmg_A 70 KKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLD--I---KKYDLIF 144 (262)
T ss_dssp SSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSC--C---CCEEEEE
T ss_pred CCCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHH--H---hhCCEEE
Confidence 34568999999999999998887767899999999999999887542 35899999999873 2 7899999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+.. +++ ..+++++.++|+|||.+++..
T Consensus 145 ~d~-----~dp--~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 145 CLQ-----EPD--IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ESS-----CCC--HHHHHHHHTTEEEEEEEEEEE
T ss_pred ECC-----CCh--HHHHHHHHHhcCCCcEEEEEc
Confidence 862 332 258999999999999999863
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=116.16 Aligned_cols=134 Identities=20% Similarity=0.270 Sum_probs=99.2
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----CC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----TY 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~~ 345 (485)
....+++.+...++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...+ .++++..+|+.+. ++
T Consensus 274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 4556666677778889999999999999999988 7799999999999999999886433 3799999999872 34
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
++++||+|++.....-. ..+++.+.+ ++|++.++++.... +...-...|.+.||+
T Consensus 353 ~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~---------------------tlard~~~l~~~Gy~ 407 (433)
T 1uwv_A 353 AKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPA---------------------TLARDSEALLKAGYT 407 (433)
T ss_dssp GTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHH---------------------HHHHHHHHHHHTTCE
T ss_pred hcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChH---------------------HHHhhHHHHHHCCcE
Confidence 56789999996543322 245565554 78999988873210 111123566778998
Q ss_pred EEEEe
Q 043471 426 DIIAE 430 (485)
Q Consensus 426 ~~~~~ 430 (485)
+..+.
T Consensus 408 ~~~~~ 412 (433)
T 1uwv_A 408 IARLA 412 (433)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.9e-12 Score=122.48 Aligned_cols=115 Identities=18% Similarity=0.198 Sum_probs=86.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCC--CCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTF--SED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~--~~~ 119 (485)
..++..+ ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.. ...+++++++|+.+....+ ..+
T Consensus 202 ~~~~~~~---~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~ 278 (382)
T 1wxx_A 202 RLYMERF---RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGE 278 (382)
T ss_dssp HHHGGGC---CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHHHhc---CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCC
Confidence 3344444 67899999999999999999987899999999999999998743 2346999999997631101 156
Q ss_pred CeeEEEhhhhhhccC-------hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 120 SVDMMFSNWLLMYLS-------DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+||+|++.-.....+ ......++.++.++|+|||+++++...
T Consensus 279 ~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 279 RFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 899999852111110 023668999999999999999997654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-11 Score=121.35 Aligned_cols=142 Identities=13% Similarity=0.092 Sum_probs=99.5
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CC-CeEEEEccCCCC-C-C--
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KC-SVEFEVADCTKK-T-Y-- 345 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~-~i~~~~~d~~~~-~-~-- 345 (485)
..++..+. .++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++... .. +++++++|+.+. + +
T Consensus 203 ~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~ 281 (385)
T 2b78_A 203 RNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR 281 (385)
T ss_dssp HHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH
Confidence 34444432 567899999999999999999862248999999999999999998643 33 799999998663 2 1
Q ss_pred CCCCccEEEEcccc-----cccC----CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHH
Q 043471 346 PENSFDVIYSRDTI-----LHIQ----DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416 (485)
Q Consensus 346 ~~~~fD~i~~~~~~-----~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (485)
...+||+|++.... .+.. +..++++.+.++|+|||.++++...... ....+ .+.+.
T Consensus 282 ~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~--~~~~~-------------~~~i~ 346 (385)
T 2b78_A 282 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM--TVSQF-------------KKQIE 346 (385)
T ss_dssp TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS--CHHHH-------------HHHHH
T ss_pred hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC--CHHHH-------------HHHHH
Confidence 24589999996443 2232 3455778889999999999998543211 11111 23456
Q ss_pred HHHHhCCCeEEEEe
Q 043471 417 QMLKDAGFVDIIAE 430 (485)
Q Consensus 417 ~~l~~aGf~~~~~~ 430 (485)
+.+.++|.+++...
T Consensus 347 ~~~~~~g~~~~~~~ 360 (385)
T 2b78_A 347 KGFGKQKHTYLDLQ 360 (385)
T ss_dssp HHHTTCCCEEEEEE
T ss_pred HHHHHcCCcEEEeC
Confidence 67778898855443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=121.49 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=86.9
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC--CC-CeEEEEeeccCCCCCC--
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH--FE-NVKFMCADVTSPDLTF-- 116 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~--~~-~~~~~~~d~~~~~~~~-- 116 (485)
.+.++..+. .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++... .. +++++++|+.+....+
T Consensus 207 ~~~~~~~~~-~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~ 285 (396)
T 2as0_A 207 NRLALEKWV-QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK 285 (396)
T ss_dssp HHHHHGGGC-CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHh-hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh
Confidence 344444432 3678999999999999999999865 899999999999999987532 22 7999999987631001
Q ss_pred CCCCeeEEEhhhhhhccCh-------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSD-------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
..++||+|++.-.....+. .....++.++.++|+|||.+++.+..
T Consensus 286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 2568999998532111110 23678999999999999999887654
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.2e-10 Score=106.95 Aligned_cols=163 Identities=13% Similarity=0.200 Sum_probs=107.3
Q ss_pred HHHHHHHHHcCCCC-----CCEEEEECCCCChhHHHHhh--------c--------CCCEEEEEeCCHHHHHHHHHHhcC
Q 043471 270 ETTKEFVAKLDLKP-----GQKVLDVGCGIGGGDFYMAD--------K--------FDVHVVGIDLSINMISFALERAIG 328 (485)
Q Consensus 270 ~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~g~D~s~~~~~~a~~~~~~ 328 (485)
+.+++.++.+...+ ..+|+|+|||+|..+..++. + ...+|...|+..+.....=+.+..
T Consensus 34 ~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~ 113 (374)
T 3b5i_A 34 HLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPP 113 (374)
T ss_dssp HHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCC
T ss_pred HHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhh
Confidence 34555666665543 47999999999998887622 1 135888889877766554444432
Q ss_pred CCC-------------CeEEEE---ccCCCCCCCCCCccEEEEcccccccC-----------------------------
Q 043471 329 LKC-------------SVEFEV---ADCTKKTYPENSFDVIYSRDTILHIQ----------------------------- 363 (485)
Q Consensus 329 ~~~-------------~i~~~~---~d~~~~~~~~~~fD~i~~~~~~~~~~----------------------------- 363 (485)
... +..|+. +.+..-.+|+++||+|+++.++||+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~ 193 (374)
T 3b5i_A 114 LVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTT 193 (374)
T ss_dssp BCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHH
T ss_pred hhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHH
Confidence 111 112333 33333467899999999999999986
Q ss_pred ---------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCC----------hhHHHHHH----------------hcCCC
Q 043471 364 ---------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPS----------VEFSEYIK----------------QRGYD 408 (485)
Q Consensus 364 ---------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~----------------~~~~~ 408 (485)
|...+|+..++.|+|||+++++........+. ..+...+. .....
T Consensus 194 ~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y 273 (374)
T 3b5i_A 194 TAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVY 273 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcccc
Confidence 33346888899999999999997766543211 11111111 01234
Q ss_pred CCCHHHHHHHHH-hCCCeEEEEeec
Q 043471 409 LHDVKSYGQMLK-DAGFVDIIAEDR 432 (485)
Q Consensus 409 ~~~~~~~~~~l~-~aGf~~~~~~~~ 432 (485)
.++.+++.+.++ +.||++..++..
T Consensus 274 ~ps~~E~~~~l~~~~~F~I~~le~~ 298 (374)
T 3b5i_A 274 APSLQDFKEVVDANGSFAIDKLVVY 298 (374)
T ss_dssp CCCHHHHHHHHHHHCSEEEEEEEEE
T ss_pred CCCHHHHHHHHHhcCCcEEEEEEEE
Confidence 578999999998 599999877644
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-12 Score=111.83 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=85.5
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCee
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+++.+ ..+.+|||||||+|-++..++.. ..+|+|+|+++.|++.++++.... .+.++.+.|.... .+.++||
T Consensus 126 i~~~i--~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~---~p~~~~D 200 (281)
T 3lcv_B 126 LFRHL--PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLED---RLDEPAD 200 (281)
T ss_dssp HGGGS--CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTS---CCCSCCS
T ss_pred HHhcc--CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeeccc---CCCCCcc
Confidence 34444 33679999999999999988876 569999999999999999986432 3578888887653 2568999
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+|+++-+++|+.+......+ ++...|+|+|.++-
T Consensus 201 vaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS 234 (281)
T 3lcv_B 201 VTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT 234 (281)
T ss_dssp EEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred hHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe
Confidence 99999999999876555566 99999999997655
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-11 Score=113.08 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
..+..+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+++.+++.+++++...+ .+++++.+|+.+.++ .
T Consensus 29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~--~ 105 (299)
T 2h1r_A 29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVF--P 105 (299)
T ss_dssp HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCC--C
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCc--c
Confidence 56778888888888999999999999999999988 6799999999999999999874222 479999999988765 4
Q ss_pred CccEEEEccccc
Q 043471 349 SFDVIYSRDTIL 360 (485)
Q Consensus 349 ~fD~i~~~~~~~ 360 (485)
+||+|+++...+
T Consensus 106 ~~D~Vv~n~py~ 117 (299)
T 2h1r_A 106 KFDVCTANIPYK 117 (299)
T ss_dssp CCSEEEEECCGG
T ss_pred cCCEEEEcCCcc
Confidence 799999976544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-11 Score=119.85 Aligned_cols=107 Identities=21% Similarity=0.107 Sum_probs=86.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC---CeEEEEccCCCCCC----CCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC---SVEFEVADCTKKTY----PENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~---~i~~~~~d~~~~~~----~~~~fD~i~ 354 (485)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...+. +++++.+|+.+... ...+||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 46789999999999999999987335999999999999999999864433 79999999876421 146899999
Q ss_pred Ecccc---------cccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 355 SRDTI---------LHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 355 ~~~~~---------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+.... ....+...++.++.+.|+|||.+++++..
T Consensus 299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 97433 22256778899999999999999998643
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-11 Score=121.40 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=87.4
Q ss_pred ccCCCC--CCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC-CCC
Q 043471 48 SLLPPY--EGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-SED 119 (485)
Q Consensus 48 ~~~~~~--~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-~~~ 119 (485)
..+... ++.+|||+|||+|..+..+++. +..|+|+|+|+.+++.++++... ..++.++++|+.. ++. .++
T Consensus 109 ~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~--~~~~~~~ 186 (479)
T 2frx_A 109 AALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRV--FGAAVPE 186 (479)
T ss_dssp HHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTT--HHHHSTT
T ss_pred HHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHH--hhhhccc
Confidence 445555 8899999999999999999986 36899999999999999887532 3479999999887 332 357
Q ss_pred CeeEEEhh------hhhhccCh-------H-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 120 SVDMMFSN------WLLMYLSD-------K-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 120 ~~D~v~~~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+||+|++. +++.+.++ . ...+++.++.++|||||+|++++.+..
T Consensus 187 ~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~ 250 (479)
T 2frx_A 187 MFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN 250 (479)
T ss_dssp CEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred cCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence 89999962 23332221 1 134789999999999999999877654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.6e-11 Score=110.68 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=83.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+....+.+++.+...++ +|||||||+|.++..|++.+.+|+|+|+++.|++.++++... .+++++++|+.+.++ +
T Consensus 31 ~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~~--~ 106 (271)
T 3fut_A 31 VSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYPW--E 106 (271)
T ss_dssp CCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSCG--G
T ss_pred CCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCCh--h
Confidence 466788899999988888 999999999999999999999999999999999999998763 689999999988543 3
Q ss_pred C-CCeeEEEhhhhhhccChHHHHHHHHH
Q 043471 118 E-DSVDMMFSNWLLMYLSDKEVEKLAER 144 (485)
Q Consensus 118 ~-~~~D~v~~~~~~~~~~~~~~~~~l~~ 144 (485)
+ ..+|.|+++. .++++.+...+++..
T Consensus 107 ~~~~~~~iv~Nl-Py~iss~il~~ll~~ 133 (271)
T 3fut_A 107 EVPQGSLLVANL-PYHIATPLVTRLLKT 133 (271)
T ss_dssp GSCTTEEEEEEE-CSSCCHHHHHHHHHH
T ss_pred hccCccEEEecC-cccccHHHHHHHhcC
Confidence 2 2688888874 567776544455544
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.3e-11 Score=110.84 Aligned_cols=97 Identities=16% Similarity=0.252 Sum_probs=79.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC-
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF- 116 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~- 116 (485)
.+......+++.+...++.+|||||||+|.++..|++++.+|+|+|+++.|++.++++....++++++++|+.+.+++-
T Consensus 13 ~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 13 HDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSV 92 (255)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGS
T ss_pred cCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHh
Confidence 4567788899999888899999999999999999999999999999999999999998766579999999999865431
Q ss_pred -CCCCeeEEEhhhhhhccChH
Q 043471 117 -SEDSVDMMFSNWLLMYLSDK 136 (485)
Q Consensus 117 -~~~~~D~v~~~~~~~~~~~~ 136 (485)
..++|| |+++ ..++++.+
T Consensus 93 ~~~~~~~-vv~N-lPY~is~~ 111 (255)
T 3tqs_A 93 KTDKPLR-VVGN-LPYNISTP 111 (255)
T ss_dssp CCSSCEE-EEEE-CCHHHHHH
T ss_pred ccCCCeE-EEec-CCcccCHH
Confidence 135688 6655 34555543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.2e-11 Score=119.18 Aligned_cols=107 Identities=15% Similarity=0.147 Sum_probs=83.3
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcC--CC-C-CeEEEEeeccCCCCCC--CCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNG--HF-E-NVKFMCADVTSPDLTF--SEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~--~~-~-~~~~~~~d~~~~~~~~--~~~~~D~v~ 125 (485)
.++.+|||+|||+|.++..+++.| .+|+|+|+|+.+++.|+++.. .. . +++++++|+.+....+ ..++||+|+
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 467899999999999999999986 489999999999999998643 22 3 7999999997631001 146899999
Q ss_pred hhhhh---------hccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 126 SNWLL---------MYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 126 ~~~~~---------~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.-.. ..... ...++.++.+.|+|||+++++...
T Consensus 299 ~dpP~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~ 341 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGACRG--YKDINMLAIQLLNEGGILLTFSCS 341 (396)
T ss_dssp ECCSSTTTCSSSSSCCCTH--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ECCCCCCCChhHHHHHHHH--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 86321 11123 678999999999999999997654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-11 Score=123.27 Aligned_cols=123 Identities=17% Similarity=0.162 Sum_probs=90.4
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~ 113 (485)
+......+...+...++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++... .. +.++++|+..+.
T Consensus 86 Qd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~ 164 (464)
T 3m6w_A 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA 164 (464)
T ss_dssp CCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH
T ss_pred ECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh
Confidence 3333344445567778999999999999999999976 25899999999999999887532 23 899999987732
Q ss_pred CCCCCCCeeEEEh----h--hhhhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 114 LTFSEDSVDMMFS----N--WLLMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 114 ~~~~~~~~D~v~~----~--~~~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
...+++||+|++ + +++.+-++. ...++++++.++|||||+|+.++.+..
T Consensus 165 -~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~ 233 (464)
T 3m6w_A 165 -EAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA 233 (464)
T ss_dssp -HHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred -hhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence 123578999994 2 223222221 126799999999999999999876653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-11 Score=121.42 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=88.3
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC-CCCCCcc
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT-YPENSFD 351 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~-~~~~~fD 351 (485)
...+...++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++...+ .++.+.++|...++ ..+++||
T Consensus 98 ~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD 177 (456)
T 3m4x_A 98 GTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177 (456)
T ss_dssp HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEE
T ss_pred HHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCC
Confidence 344567889999999999999999999875 3599999999999999999886433 36888888887653 2357899
Q ss_pred EEEEccc------ccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 352 VIYSRDT------ILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 352 ~i~~~~~------~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
+|++... +..-++ ...+|+++.++|||||+++.++....
T Consensus 178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 9998432 211111 22779999999999999999865443
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=9.1e-11 Score=109.98 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=79.4
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
...+..+++.+.+.++.+|||||||+|.++..++++ +.+|+|+|+++.+++.+++++.+ ..+++++++|+.+.++++.
T Consensus 36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~-~~~v~vi~gD~l~~~~~~~ 113 (295)
T 3gru_A 36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL-YNNIEIIWGDALKVDLNKL 113 (295)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH-CSSEEEEESCTTTSCGGGS
T ss_pred HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc-CCCeEEEECchhhCCcccC
Confidence 356788999999999999999999999999999998 67999999999999999998863 2489999999999888877
Q ss_pred CccEEEEccccc
Q 043471 349 SFDVIYSRDTIL 360 (485)
Q Consensus 349 ~fD~i~~~~~~~ 360 (485)
+||+|+++..++
T Consensus 114 ~fD~Iv~NlPy~ 125 (295)
T 3gru_A 114 DFNKVVANLPYQ 125 (295)
T ss_dssp CCSEEEEECCGG
T ss_pred CccEEEEeCccc
Confidence 899999886543
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.2e-11 Score=116.09 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC-CCCCeeEEEh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-SEDSVDMMFS 126 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-~~~~~D~v~~ 126 (485)
..++.+|||+| |+|.++..+++.+ .+|+|+|+|+.|++.|+++... ..+++++++|+.+. ++. .+++||+|++
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~-l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKP-LPDYALHKFDTFIT 247 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSC-CCTTTSSCBSEEEE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhh-chhhccCCccEEEE
Confidence 34678999999 9999999999886 4899999999999999987532 23799999999872 332 3568999999
Q ss_pred hhhhhccChHHHHHHHHHHHhhcccCcEE-EEE
Q 043471 127 NWLLMYLSDKEVEKLAERMVKWLKVGGYI-FFR 158 (485)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l-~~~ 158 (485)
+..++.. . ...+++++.++|+|||.+ +++
T Consensus 248 ~~p~~~~-~--~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 248 DPPETLE-A--IRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CCCSSHH-H--HHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCCCchH-H--HHHHHHHHHHHcccCCeEEEEE
Confidence 8544332 2 468999999999999944 554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=111.88 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCCCCccEEEEcccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPENSFDVIYSRDTI 359 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~ 359 (485)
.++.+|||+|||+|.++.. ++. +.+|+|+|+|+.+++.|++++... ..+++++++|+.+.. ++||+|++....
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKN-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLPK 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTT-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCTT
T ss_pred CCCCEEEEccCccCHHHHh-ccC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCcH
Confidence 5788999999999999999 874 679999999999999999998643 347999999998865 789999996432
Q ss_pred cccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 360 LHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 360 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
....+++.+.++|+|||.+++.+...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 23478999999999999999986544
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-11 Score=128.62 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=83.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC---CC-CCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG---HF-ENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~---~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
+|.+|||+|||+|.+++.+++.|+ +|+++|+|+.+++.|+++.. .. .+++++++|+.+. ++...++||+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~-l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW-LREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH-HHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH-HHhcCCCccEEEECC
Confidence 588999999999999999998877 59999999999999998642 22 3799999999763 223457899999853
Q ss_pred hhh--------ccC-hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 129 LLM--------YLS-DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 129 ~~~--------~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
... ... .....+++..+.++|+|||+++++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 110 011 123778899999999999999987553
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-11 Score=119.42 Aligned_cols=115 Identities=23% Similarity=0.208 Sum_probs=88.9
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC----C
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY----P 346 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~----~ 346 (485)
..++..+ .+++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...+ .+++++++|+.+... +
T Consensus 208 ~~~~~~~-~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~ 286 (396)
T 2as0_A 208 RLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK 286 (396)
T ss_dssp HHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHH-hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh
Confidence 3444444 34788999999999999999998722499999999999999999986433 379999999876421 2
Q ss_pred CCCccEEEEccccc---------ccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTIL---------HIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.++||+|++..... +..+...++.++.++|+|||.+++.+..
T Consensus 287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 56899999964332 2245678899999999999999888643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-11 Score=119.97 Aligned_cols=105 Identities=22% Similarity=0.152 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC----CCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY----PENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~----~~~~fD~i~~~~ 357 (485)
++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...+ .+++++++|+.+... ..++||+|++..
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 6789999999999999999988 6799999999999999999986433 248999999876421 156899999964
Q ss_pred cccc---------cCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 358 TILH---------IQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 358 ~~~~---------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.... ..+...++.++.++|+|||.+++++..
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3321 134567899999999999999998643
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-11 Score=120.56 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=91.7
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccC
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTS 111 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~ 111 (485)
..+......+...+...++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++... ..++.++++|+..
T Consensus 88 ~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~ 167 (456)
T 3m4x_A 88 YSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAE 167 (456)
T ss_dssp EECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHH
T ss_pred EEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence 334444444455567788999999999999999999986 35899999999999999886532 2479999999876
Q ss_pred CCCCCCCCCeeEEEhhh------hhhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 112 PDLTFSEDSVDMMFSNW------LLMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~------~~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
+. ...+++||+|++.. ++.+-++. ...+++.++.++|||||+|+.++.+..
T Consensus 168 l~-~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 238 (456)
T 3m4x_A 168 LV-PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA 238 (456)
T ss_dssp HH-HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred hh-hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence 32 12357899999632 22221111 123789999999999999999877654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=111.82 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=79.7
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
.++.+|||+|||+|.+++. ++.+.+|+|+|+|+.+++.|+++.. ..++++++++|+.+. . ++||+|++.-.
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~--~---~~fD~Vi~dpP 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREV--D---VKGNRVIMNLP 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC--C---CCEEEEEECCT
T ss_pred CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHh--c---CCCcEEEECCc
Confidence 4678999999999999999 8877799999999999999998743 224799999999873 2 78999998631
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+. ...++..+.++|+|||.+++.+..
T Consensus 268 --~~----~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 268 --KF----AHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp --TT----GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --Hh----HHHHHHHHHHHcCCCCEEEEEEee
Confidence 11 126889999999999999997664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 485 | ||||
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-23 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 6e-08 | |
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 2e-19 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-18 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 6e-10 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 3e-18 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 2e-10 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 6e-17 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 8e-14 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 4e-15 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-06 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 5e-15 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 4e-06 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 2e-14 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 6e-12 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 2e-14 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 8e-07 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 6e-14 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 4e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 7e-14 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 0.001 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 8e-14 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 8e-08 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 1e-13 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 3e-12 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-10 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 1e-11 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 7e-04 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-11 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 2e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 9e-11 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 0.004 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 1e-10 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 3e-10 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 7e-08 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 4e-10 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.002 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 7e-10 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 8e-10 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-05 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 1e-09 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-06 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-09 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 2e-05 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 3e-09 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 3e-09 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 6e-06 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 3e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 3e-09 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 4e-05 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-08 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 4e-05 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 5e-08 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 7e-08 | |
| d1im8a_ | 225 | c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) | 7e-08 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 8e-08 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 8e-08 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 2e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-07 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 8e-07 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-07 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 9e-07 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 2e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 2e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 0.002 | |
| d1zq9a1 | 278 | c.66.1.24 (A:36-313) Probable dimethyladenosine tr | 2e-06 | |
| d1vlma_ | 208 | c.66.1.41 (A:) Possible histamine N-methyltransfer | 3e-06 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 5e-06 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 1e-05 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 4e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 3e-04 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 0.004 | |
| d1wg8a2 | 182 | c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransf | 4e-04 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 4e-04 | |
| d2as0a2 | 324 | c.66.1.51 (A:73-396) Hypothetical protein PH1915, | 5e-04 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 7e-04 | |
| d2igta1 | 309 | c.66.1.51 (A:1-309) Putative methyltransferase Atu | 7e-04 | |
| d2b78a2 | 317 | c.66.1.51 (A:69-385) Hypothetical protein SMu776, | 0.001 | |
| d2bm8a1 | 232 | c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI | 0.002 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.002 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 0.002 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 0.003 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 0.003 | |
| d1vbfa_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 0.003 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.003 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 0.003 | |
| d1qama_ | 235 | c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus | 0.004 |
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 96.2 bits (238), Expect = 3e-23
Identities = 33/168 (19%), Positives = 54/168 (32%), Gaps = 2/168 (1%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL 329
E L +KPG ++LD+G G G A + GID+S + A RA L
Sbjct: 20 EKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL 79
Query: 330 KCSVEFE-VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
S + + DV + + LKPGG +LI +
Sbjct: 80 GVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139
Query: 389 KSFGTPSVEFSEYIKQRGY-DLHDVKSYGQMLKDAGFVDIIAEDRTEQ 435
+ E ++ D + D G+ + ++
Sbjct: 140 WRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMVLADQE 187
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 51.5 bits (122), Expect = 6e-08
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 3/128 (2%)
Query: 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN 96
+E+ + +L G +L+ G+G G A+ G +D + +
Sbjct: 17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 76
Query: 97 GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+ + + + D+ E + + LK GG +
Sbjct: 77 EELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIML 134
Query: 157 FRESCFHQ 164
E + Q
Sbjct: 135 IGEPYWRQ 142
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 86.0 bits (211), Expect = 2e-19
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 3/193 (1%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLK 330
E L+ K LD+G G GG ++ KF V + ++++ E GL
Sbjct: 57 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLA 116
Query: 331 CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
++ + + +NS+D I+S+D LH DK +F+ + LKP G + I+D K
Sbjct: 117 DNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 176
Query: 391 FGTPSVEFSEYIKQ-RGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
G + + + +D+ + Y + K+ G V + R + V + + K
Sbjct: 177 DGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYSKVKAELIK 236
Query: 450 DKDAFIKDFSEVF 462
S F
Sbjct: 237 RSSEIASFCSPEF 249
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 81.5 bits (200), Expect = 3e-18
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 6/171 (3%)
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMIS-FALERAIGL 329
+ + + + +VLD+G G G + +G+D + M+ +
Sbjct: 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKG 62
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389
+V F+ +P++SFD+I R H D + + LK G L+ D+
Sbjct: 63 VENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122
Query: 390 SFGTPSVEFSEYIKQRGYDLH----DVKSYGQMLKDAGFVDIIAEDRTEQF 436
EF ++ + H + + M +
Sbjct: 123 PEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPI 173
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 57.3 bits (137), Expect = 6e-10
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 11/168 (6%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFM 105
++ VL+ GAG G + I +D +++
Sbjct: 8 MIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVR 67
Query: 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS 165
T+ L F +DS D++ + + SD K + + LK G + +
Sbjct: 68 FQQGTAESLPFPDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED 125
Query: 166 GDSK-------RKHNPTHYREPRF--YSKVFKECQIQDASGNSFELSL 204
R +P+H RE + +F Q+ + L +
Sbjct: 126 PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPI 173
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 81.2 bits (199), Expect = 3e-18
Identities = 36/176 (20%), Positives = 66/176 (37%), Gaps = 8/176 (4%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMIS-FALERAIGLKCS 332
+ + LK ++VLDV G G A VV DL+ +++
Sbjct: 6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392
VE+ D + + + F ++ R H + + ++ LK GG +L+ D
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124
Query: 393 TPSVEFSEYIKQRGYDLH----DVKSYGQMLKDAGF--VDIIAEDRTEQFVQVLQR 442
F Y+++ H + +ML++AGF ++ +T F R
Sbjct: 125 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDR 180
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 58.9 bits (141), Expect = 2e-10
Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 7/160 (4%)
Query: 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEV 95
SDL K ++ + + VL+ G G A V+A D + ++K
Sbjct: 2 SDLAK-----LMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 56
Query: 96 NGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
+ + + + F+++ ++ + + + LK GG +
Sbjct: 57 IEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQL 114
Query: 156 FFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDA 195
++ ++ +N + + +K+
Sbjct: 115 LLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKM 154
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 78.1 bits (191), Expect = 6e-17
Identities = 42/179 (23%), Positives = 75/179 (41%), Gaps = 6/179 (3%)
Query: 14 KNYWMEHSANLTVEAMMLD-SKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGEL 72
YW + TV ++ D+D E ++ LP + L+ GAGIGR T L
Sbjct: 54 LEYW--RTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNL 111
Query: 73 AKKAGH-VIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131
K L+ + ++++ + KF+ A + + ++ D++ W +
Sbjct: 112 LTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT--LPPNTYDLIVIQWTAI 169
Query: 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKEC 190
YL+D + K + + L GYIFF+E+C K + + R Y ++F E
Sbjct: 170 YLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 68.9 bits (167), Expect = 8e-14
Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 10/215 (4%)
Query: 225 WIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVF-GVGFVSTGGIETTKEFVAKLDLKP 283
W + D + ++Y V G+ V IE ++ F+A L
Sbjct: 34 WKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHG 93
Query: 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK 343
+ LD G GIG + K ++ +M+ A +R + +F +A
Sbjct: 94 TSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEA-KRELAGMPVGKFILASMETA 152
Query: 344 TYPENSFDVIYSRDTI--LHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY 401
T P N++D+I + T L D FK + L P G + + C +
Sbjct: 153 TLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF-----LV 207
Query: 402 IKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
K+ Y ++ ++G ++ E E++
Sbjct: 208 DKEDSSLTRSDIHYKRLFNESGV-RVVKEAFQEEW 241
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.7 bits (183), Expect = 4e-15
Identities = 20/160 (12%), Positives = 49/160 (30%), Gaps = 17/160 (10%)
Query: 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG 328
+ + LK G +D+G G+G A + G ++ + + +
Sbjct: 203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEE 262
Query: 329 LKCSVEFEVADCTKKTY-------PENSFDVIYSRDTI------LHIQDKPALFKSFFKW 375
LK + + N + + + L +D + +
Sbjct: 263 LKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQT 322
Query: 376 LKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSY 415
K G ++ S + + + + Y + ++ V+ Y
Sbjct: 323 AKVGCKIISLK---SLRSLTYQINFYNVENIFNRLKVQRY 359
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.5 bits (115), Expect = 1e-06
Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEE-------- 94
+V +G T ++ G+G+G + A + G + +D
Sbjct: 207 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR 266
Query: 95 -----VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWL 149
+ + + V + + D++ N L D+++ K E++++
Sbjct: 267 CKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTA 323
Query: 150 KVGGYIFFRES 160
KVG I +S
Sbjct: 324 KVGCKIISLKS 334
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 73.0 bits (178), Expect = 5e-15
Identities = 30/193 (15%), Positives = 62/193 (32%), Gaps = 23/193 (11%)
Query: 279 LDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFE 336
+ ++D GCG G + GID +++ A E L EF
Sbjct: 23 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFL 82
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD--YCKSFGTP 394
+ + +D+ +LH+ + + +K GG ++ + + + +
Sbjct: 83 E-GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASY 141
Query: 395 SVE----------------FSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQ 438
++ F ++ G D + L + G +I E R V
Sbjct: 142 LLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNI--ECRVSDKVN 199
Query: 439 VLQRELDAIEKDK 451
L + +K+
Sbjct: 200 FLDSNMHHNDKND 212
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 46.0 bits (108), Expect = 4e-06
Identities = 36/235 (15%), Positives = 81/235 (34%), Gaps = 22/235 (9%)
Query: 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVKF 104
++ + ++++G G G L +D ++++ + E+
Sbjct: 21 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSE 80
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ 164
D D+ + L++++ E + ++M+ +K GG I E +
Sbjct: 81 FL--EGDATEIELNDKYDIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHW-I 135
Query: 165 SGDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQIC 224
S + + E + K + + + + +G K I Y+ +N C
Sbjct: 136 SNMASYLLDGEKQSEFIQLGVLQKL--FESDTQRNGKDGNIGMK-IPIYLSELGVKNIEC 192
Query: 225 WIWQKVRSQNDRGFQQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKL 279
+ KV FLD+ + + Y+ + G G ++FV +L
Sbjct: 193 RVSDKVN---------FLDSNMHHNDKNDLYQSLKEEGI--AGDPGDKQQFVERL 236
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 69.5 bits (169), Expect = 2e-14
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 263 FVSTGGIET-TKEFV-----AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSI 316
F+ + T V + +DVGCG GG +A + V ID +
Sbjct: 7 FIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNP 65
Query: 317 NMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFK 374
IS GL +V D + D+ + + + +
Sbjct: 66 EAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGEL---QEILRIIKD 122
Query: 375 WLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDL 409
LKPGG ++++ ++E ++ G+D+
Sbjct: 123 KLKPGGRIIVTAILLETKFEAMEC---LRDLGFDV 154
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 62.1 bits (150), Expect = 6e-12
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 10/127 (7%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVI---KKNEEVNG 97
E R ++ L P + ++ G G G T ELA + V A+D I + N + +G
Sbjct: 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHG 79
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+NV M D P+ +D+ L +++ + LK GG I
Sbjct: 80 LGDNVTLMEGDA--PEALCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIV 132
Query: 158 RESCFHQ 164
Sbjct: 133 TAILLET 139
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 70.1 bits (171), Expect = 2e-14
Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 12/153 (7%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVE 334
+ + +K K+L +G G ++AD V I+ + ++ L+ + +
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP 126
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP 394
+ Y V + + L K+ +LK GG +I+ +S
Sbjct: 127 ILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID-V 185
Query: 395 SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427
+ + E K+ ++L+ GF +
Sbjct: 186 TKDPKEIFKE----------QKEILEAGGFKIV 208
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 47.8 bits (113), Expect = 8e-07
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAG--HVIALDFIDSVIKKNEEVNGHFENVKF 104
L ++P +L GA G +A A V A+++ ++++ + EN+
Sbjct: 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIP 126
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ 164
+ D P + V+ + + + ++ E L + +LK GGY + +
Sbjct: 127 ILGDANKPQ--EYANIVEKVDVIYEDVAQPNQ-AEILIKNAKWFLKKGGYGMI--AIKAR 181
Query: 165 SGDSKRKHNPTHYRE 179
S D + +
Sbjct: 182 SIDVTKDPKEIFKEQ 196
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 68.2 bits (165), Expect = 6e-14
Identities = 18/177 (10%), Positives = 45/177 (25%), Gaps = 24/177 (13%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
+++ + L++ PG +VL CG +++ + HVVG +LS +
Sbjct: 10 QQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHI 68
Query: 333 VEFEVADCTKKTY--------------PENSFDVIYSRDTILHIQDK--PALFKSFFKWL 376
Y R ++ + + +
Sbjct: 69 TSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALM 128
Query: 377 KPGGTVLISDYCKSFGTP-------SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426
+ L+ + + +++ V + A +
Sbjct: 129 PQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHSSARGLK 185
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 45.5 bits (106), Expect = 4e-06
Identities = 13/145 (8%), Positives = 37/145 (25%), Gaps = 13/145 (8%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
+ S L G VL G + L+ + HV+ + ++ +++ G ++
Sbjct: 11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITS 70
Query: 105 -------------MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKV 151
+ + ++ L E+ + + +
Sbjct: 71 QGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ 130
Query: 152 GGYIFFRESCFHQSGDSKRKHNPTH 176
+ Q+ +
Sbjct: 131 ACSGLLITLEYDQALLEGPPFSVPQ 155
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.6 bits (169), Expect = 7e-14
Identities = 41/263 (15%), Positives = 74/263 (28%), Gaps = 48/263 (18%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKL---------DLKPGQKVLDVGCGIGGGDFYMADK 304
+Y F + + +EF+ K D K K+L +G G G D + K
Sbjct: 2 KYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSK 61
Query: 305 F-------DVHVVGIDLSINMISFALERAIGLKCSVEFEVADC----------TKKTYPE 347
++ ++ S I+ E + + A +
Sbjct: 62 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121
Query: 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSV---EFSEYIKQ 404
+D I+ + +++D PA K F L +LI S G + S + +
Sbjct: 122 QKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQD 181
Query: 405 RGYDLHDVKSYGQMLKDAGF-----VDIIAEDRTEQF--------------VQVLQRELD 445
QML + G + D ++ F +
Sbjct: 182 DLCQYITSDDLTQMLDNLGLKYECYDLLSTMDISDCFIDGNENGDLLWDFLTETCNFNAT 241
Query: 446 AIEKDKDAFIKDFSEVFCFFHLD 468
A + KD E +
Sbjct: 242 APPDLRAELGKDLQEPEFSAKKE 264
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 0.001
Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 20/161 (12%)
Query: 40 KEERPEVLSLLP-PYEGKTVLEFGAGIGRFTGELAKK--------AGHVIALDFIDSVIK 90
++ P ++ + +L G G G ++ K + ++ I
Sbjct: 25 DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 84
Query: 91 KNEEVNGHFENVKFMCADV---------TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKL 141
K +E+ N++ + + D + +L Y+ D
Sbjct: 85 KYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PAT 142
Query: 142 AERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRF 182
+ L + D K + + +
Sbjct: 143 LKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDL 183
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.3 bits (171), Expect = 8e-14
Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 15/178 (8%)
Query: 253 LRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVG 311
L F + + + ++ + +D+G G+G +A + H G
Sbjct: 121 LNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYG 180
Query: 312 IDLSINMISFALERAIGLK----------CSVEFEVADCTKKTYPENSFDV-IYSRDTIL 360
++ + +A + E D + + E + + +
Sbjct: 181 VEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFA 240
Query: 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418
+ K F +K GG ++ S K F + + + V +
Sbjct: 241 FGPEVDHQLKERFANMKEGGRIVSS---KPFAPLNFRINSRNLSDIGTIMRVVELSPL 295
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 8e-08
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 16/131 (12%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFE-- 100
+++ + + ++ G+G+G+ ++A H ++ D K E ++ F
Sbjct: 142 QMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW 201
Query: 101 ---------NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKV 151
D S + + ++F N EV+ + +K
Sbjct: 202 MKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAF---GPEVDHQLKERFANMKE 258
Query: 152 GGYIFFRESCF 162
GG I +
Sbjct: 259 GGRIVSSKPFA 269
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 67.8 bits (165), Expect = 1e-13
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 1/118 (0%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMAD-KFDVHVVGIDLSINMISFALERAIGLKCSVEFE 336
+L L+ ++VL +G G ++AD + + ++ S LE +
Sbjct: 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLL 110
Query: 337 VADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTP 394
Y V I L + +LK G V+I +S +
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDST 168
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 51.6 bits (123), Expect = 3e-08
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 7/150 (4%)
Query: 50 LPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCA 107
L + VL GA G LA G + A+++ +K E+ N+ +
Sbjct: 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLF 111
Query: 108 DVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD 167
D + P V+ + + + ++ A +LK G + +S D
Sbjct: 112 DASKPWKYS--GIVEKVDLIYQDIAQKNQIEILKAN-AEFFLKEKGEVVI--MVKARSID 166
Query: 168 SKRKHNPTHYREPRFYSKVFKECQIQDASG 197
S + + FK +
Sbjct: 167 STAEPEEVFKSVLKEMEGDFKIVKHGSLMP 196
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 63.5 bits (153), Expect = 3e-12
Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 11/197 (5%)
Query: 253 LRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312
+R E F + T T + +A + + LD+GCG G Y+A V
Sbjct: 3 VRDENYFTEKYGLT---RTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANG-YDVTAW 58
Query: 313 DLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFK 370
D + ++ + +D I S ++ + Q P L
Sbjct: 59 DKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIPGLIA 118
Query: 371 SFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIKQRGYDLHDVKSYGQMLKDAGFV 425
+ + KPGG LI + P F E +R Y+ D+ Y + + +
Sbjct: 119 NMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYYEGWDMLKYNEDVGELHRT 178
Query: 426 DIIAEDRTEQFVQVLQR 442
D +F +L R
Sbjct: 179 DENGNRIKLRFATMLAR 195
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 58.1 bits (139), Expect = 2e-10
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 3/152 (1%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE 100
+VL+ L+ G G GR + LA V A D + + E +
Sbjct: 17 RTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEG 76
Query: 101 NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160
V LTF + D + S ++M+L + + L M + K GGY
Sbjct: 77 LDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLI--V 133
Query: 161 CFHQSGDSKRKHNPTHYREPRFYSKVFKECQI 192
+ D + + ++ +
Sbjct: 134 AAMDTPDFPCTVGFPFAFKEGELRRYYEGWDM 165
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 62.7 bits (152), Expect = 1e-11
Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 37/180 (20%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI----GL 329
V + D+ PG +VL+ G G G + V+ + + A
Sbjct: 89 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 148
Query: 330 KCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389
+ V+D P+ S D +L + + + + L GG +++ Y
Sbjct: 149 PDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMV--YV- 200
Query: 390 SFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
+V + + + + A + LQR + +
Sbjct: 201 ----ATVT------------QLSRIVEALRAKQCWTEPRA-------WETLQRGWNVVGL 237
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.2 bits (91), Expect = 7e-04
Identities = 24/118 (20%), Positives = 45/118 (38%), Gaps = 17/118 (14%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAK---KAGHVIALDFIDS---VIKKNEE--VNG 97
++ + G VLE GAG G T L + AG VI+ + ++N
Sbjct: 88 IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 147
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYI 155
+N + + +D+ + + SVD L ++ + + + L GG +
Sbjct: 148 PPDNWRLVVSDLADSE--LPDGSVDRAV-------LDMLAPWEVLDAVSRLLVAGGVL 196
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 62.0 bits (150), Expect = 2e-11
Identities = 24/176 (13%), Positives = 52/176 (29%), Gaps = 33/176 (18%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV--HVVGIDLSINMISFALERAIGLKCSV 333
+ + L+PG +L+VG G G Y+ + + ++ + + A++
Sbjct: 78 IMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIG 137
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
+ + I I D + +KPG
Sbjct: 138 NVRTSRS----DIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVATFY-------L 186
Query: 394 PSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
P+ + SE L +G + + V++++R + E
Sbjct: 187 PNFDQSEKTVLS-------------LSASGMHHL-------ETVELMKRRILVREG 222
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 40.8 bits (95), Expect = 2e-04
Identities = 16/120 (13%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEEVNGHFENV 102
++ G +LE G G G + + G + ++ + +KK + F ++
Sbjct: 77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 136
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162
+ + S+ D + ++ +++ +K G F F
Sbjct: 137 GNVRTSRSDIADFISDQMYDAVIADIPDP-------WNHVQKIASMMKPGSVATFYLPNF 189
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.7 bits (143), Expect = 9e-11
Identities = 30/161 (18%), Positives = 50/161 (31%), Gaps = 13/161 (8%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKC 331
+A G +VL+VG G+ + + I+ + + + A K
Sbjct: 44 HALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKV 103
Query: 332 SVEFEVADCTKKTYPENSFDVIY-----SRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386
+ + T P+ FD I + H + F+ LKPGG +
Sbjct: 104 IPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLT--- 160
Query: 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427
YC + S+Y L +AGF
Sbjct: 161 YCNLTSWGELMKSKYSDITIMFEETQV---PALLEAGFRRE 198
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.6 bits (83), Expect = 0.004
Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 8/146 (5%)
Query: 42 ERP--EVLSLLPPYEGKTVLEFGAGIGRFTGELA-KKAGHVIALDFIDSVIKK-NEEVNG 97
E P L+ +G VLE G G+ ++ ++ D V ++ +
Sbjct: 39 ETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDK---EVEKLAERMVKWLKVGG- 153
V + T + D + + + + + + LK GG
Sbjct: 99 QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158
Query: 154 YIFFRESCFHQSGDSKRKHNPTHYRE 179
+ + + + SK + E
Sbjct: 159 LTYCNLTSWGELMKSKYSDITIMFEE 184
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 59.6 bits (143), Expect = 1e-10
Identities = 45/222 (20%), Positives = 72/222 (32%), Gaps = 22/222 (9%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLK 330
K + +L K G VLD+GCG GG G+D++ I+ A RA +
Sbjct: 14 KACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR 73
Query: 331 CSVEFEVADCTKKTY-PENSFDVIYSRDTILHIQDKPALFKSF-------------FKWL 376
V F D + FDVI S+ + + F
Sbjct: 74 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133
Query: 377 KPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
P V++ Y + + E K + V+ Y L D+ I +
Sbjct: 134 VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 193
Query: 437 VQVLQRE-LDAIEKDK-----DAFIKDFSEVFCFFHLDCLSD 472
V +R L +E+ + + E+ L CL+
Sbjct: 194 VDGFKRLGLSLVERKGFIDFYEDEGRRNPELSKKMGLGCLTR 235
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 9/141 (6%)
Query: 54 EGKTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVI---KKNEEVNGHFENVKFMCADV 109
G +VL+ G G G + + G +D + I + V F D
Sbjct: 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS 83
Query: 110 TSPDLTFSEDSVDMMFSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFRESCFHQSGDS 168
+ ++ + S ++ + + L+ GGY S D
Sbjct: 84 YGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI----MTVPSRDV 139
Query: 169 KRKHNPTHYREPRFYSKVFKE 189
+ FY ++
Sbjct: 140 ILERYKQGRMSNDFYKIELEK 160
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.2 bits (142), Expect = 3e-10
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVE 334
+ L +VLDV CG G + ++ V +D S M+ +AL+ +
Sbjct: 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEEG-FSVTSVDASDKMLKYALKERWNRRKEPA 106
Query: 335 FEVADCTKKTY---------PENSFDVIYSRDTILHI-------QDKPALFKSFFKWLKP 378
F+ + + + VI ++ H+ + K+ ++P
Sbjct: 107 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP 166
Query: 379 GGTVLISDYCKSF 391
GG ++I +
Sbjct: 167 GGLLVIDHRNYDY 179
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.5 bits (122), Expect = 7e-08
Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 13/163 (7%)
Query: 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKK--------N 92
E + +L LL + VL+ G G + L ++ V ++D D ++K
Sbjct: 43 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRR 102
Query: 93 EEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDK-----EVEKLAERMVK 147
+E ++ D+ + ++ +L D E + +
Sbjct: 103 KEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIAS 162
Query: 148 WLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKEC 190
++ GG + + + + +K
Sbjct: 163 MVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTS 205
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (140), Expect = 4e-10
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCS 332
+ + VLD+GCG G AD ++ G+D+S I A +R
Sbjct: 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR----YPQ 130
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387
V F VA + + + S D I ++ + +KPGG V+ +
Sbjct: 131 VTFCVASSHRLPFSDTSMDAIIRIYAPCKAEE-------LARVVKPGGWVITATP 178
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 37.6 bits (86), Expect = 0.002
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 16/115 (13%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENV 102
L + VL+ G G G +T A LD IK +
Sbjct: 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFC 134
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+ D + D + + + + + +K GG++
Sbjct: 135 VASSHRLPFSDTSM-----DAIIRIYAPCKAEE---------LARVVKPGGWVIT 175
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 56.7 bits (135), Expect = 7e-10
Identities = 47/168 (27%), Positives = 77/168 (45%), Gaps = 4/168 (2%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
IET + + K +K KVLD+ CG+GG F + D VVG+D+S +MI A E A
Sbjct: 24 IETLEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKS 81
Query: 329 LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISD 386
+ +VEF V D K ++ + +FD + D+I+H + +FK + LKP G ++
Sbjct: 82 RESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYF 141
Query: 387 YCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTE 434
P ++ S + Q+ + + + F R
Sbjct: 142 TDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVR 189
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 57.0 bits (136), Expect = 8e-10
Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 7/180 (3%)
Query: 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328
I+ +E + + ++VLD+ CG G + + VVG+DL M+ A +A
Sbjct: 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLEL-AERGYEVVGLDLHEEMLRVARRKAKE 85
Query: 329 LKCSVEFEVADCTKKTYPENSFD---VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
+ + + +N FD + +S +D LF + LKPGG +
Sbjct: 86 -RNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144
Query: 386 DYCKSFG--TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRE 443
C +G V ++E + + D + ++ F ++ R V+ +
Sbjct: 145 FPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGEVKAFLVD 204
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 43.2 bits (100), Expect = 3e-05
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 1/145 (0%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
E+ E + VL+ G G T ELA++ V+ LD + +++ N+K
Sbjct: 32 EIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKA-KERNLKI 90
Query: 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQ 164
++ F + + +MY ++++ KL ++ + LK GG C+
Sbjct: 91 EFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFY 150
Query: 165 SGDSKRKHNPTHYREPRFYSKVFKE 189
G E + ++E
Sbjct: 151 GGRDGPVVWNEQKGEEKLVIMDWRE 175
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.9 bits (134), Expect = 1e-09
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 7/141 (4%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSV 333
+ +KPG+ VL +G G +++D + + GI+ S ++ + + V
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125
Query: 334 EFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
+ Y V + + L + +LK GG +I+ +S
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV 185
Query: 394 -----PSVEFSEYIKQRGYDL 409
E +++
Sbjct: 186 TKEPEQVFREVERELSEYFEV 206
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.6 bits (110), Expect = 2e-06
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAG---HVIALDFIDSVIKKNEEVNGHFENVK 103
L P GK+VL G G ++ G + ++F V+++ + N+
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIV 125
Query: 104 FMCADVTSPDLT-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162
+ D T P+ VD++F + + + L + +LK GG + +
Sbjct: 126 PILGDATKPEEYRALVPKVDVIFED----VAQPTQAKILIDNAEVYLKRGG--YGMIAVK 179
Query: 163 HQSGDSKRKHNPTH 176
+S D ++
Sbjct: 180 SRSIDVTKEPEQVF 193
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (135), Expect = 2e-09
Identities = 32/139 (23%), Positives = 50/139 (35%), Gaps = 6/139 (4%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE-RAIGLKCSVEFE 336
DL + VLDVGCG G + A HV+G+D+S + G +
Sbjct: 33 NKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLL 92
Query: 337 VADCTKKTYPENSFDVIYS---RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
P D+I S +L+ + + +L GG + D C
Sbjct: 93 RGKLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLI-FPDKCSIHLA 151
Query: 394 PSVEFSEYIKQRGYDLHDV 412
+E S+Y ++ DV
Sbjct: 152 G-LEDSQYKDEKLNYWQDV 169
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 2e-05
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDF--IDSVIKKNEEVNGHFENV 102
++ ++ K VL+ G G G + AK A HVI +D I + K+ E+NG + +
Sbjct: 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKI 89
Query: 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKE-VEKLAERMVKWLKVGGYIFFRESC 161
+ + D+ VD++ S W+ +L + ++ + +L GG IF +
Sbjct: 90 TLLRGKL--EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCS 147
Query: 162 FH 163
H
Sbjct: 148 IH 149
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 55.7 bits (133), Expect = 3e-09
Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 17/207 (8%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
+ KLDLKPG +LD+GCG G ++FDV+V+G+ LS N + + +
Sbjct: 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLAS-IDT 100
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLI------ 384
D I S + H FK F + G + +
Sbjct: 101 NRSRQVLLQGWEDFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 160
Query: 385 ---SDYCKSFGTP-----SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQF 436
+ ++F G L + + + AGF +
Sbjct: 161 HPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHY 220
Query: 437 VQVLQRELDAIEKDKDAFIKDFSEVFC 463
++ L+ D ++ +KD I+ SE
Sbjct: 221 IKTLRIWGDTLQSNKDKAIEVTSEEVY 247
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.0 bits (134), Expect = 3e-09
Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 6/132 (4%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMI-SFALERAIGLKCSVEFE 336
L + VLDVG G G + A V+GI+ S + + +A L V
Sbjct: 28 NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTII 87
Query: 337 VADCTKKTYPENSFDVIYS---RDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
+ P D+I S + + + + KWL P G + D + T
Sbjct: 88 KGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLI-FPDRATLYVT 146
Query: 394 PSVEFSEYIKQR 405
+E +Y +
Sbjct: 147 A-IEDRQYKDYK 157
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.6 bits (107), Expect = 6e-06
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 54 EGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIK--KNEEVNGHFENVKFMCADVT 110
+ K VL+ G+G G AK A VI ++ K + N V + V
Sbjct: 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV- 91
Query: 111 SPDLTFSEDSVDMMFSNWLLMYL-SDKEVEKLAERMVKWLKVGGYIF 156
++ + VD++ S W+ L + + + KWL G IF
Sbjct: 92 -EEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 55.1 bits (132), Expect = 3e-09
Identities = 29/178 (16%), Positives = 50/178 (28%), Gaps = 37/178 (20%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCS- 332
LD+K G +++D G G G +A V + A
Sbjct: 96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIE 155
Query: 333 -VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391
V +V D FD L + D ++ LK GG C
Sbjct: 156 RVTIKVRD------ISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFAT--VC--- 204
Query: 392 GTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEK 449
P+ + ++ L++ F+ I + + L R + +
Sbjct: 205 --PTTNQVQETLKK-------------LQELPFIRI-------EVWESLFRPYKPVPE 240
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (134), Expect = 3e-09
Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 24/162 (14%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALER-------- 325
++ +D+ PG VL+ G G GG +++ V+ ++ + A +
Sbjct: 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW 150
Query: 326 ----AIGLKCSVEFEVADCTK--KTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPG 379
+V+F D + + +FD + L + + F+ LK G
Sbjct: 151 KLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAV-----ALDMLNPHVTLPVFYPHLKHG 205
Query: 380 GTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421
G + Y + T +E + I+ L K +++D
Sbjct: 206 GVCAV--YVVNI-TQVIELLDGIRTCELALSCEKISEVIVRD 244
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 4e-05
Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 23/135 (17%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKA---GHVIALDFIDSVIKKNEE-------- 94
+LS++ G TVLE G+G G + L+K G VI+ + ++
Sbjct: 90 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149
Query: 95 -----VNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWL 149
V +NV F+ D++ + D + L L
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA-------LDMLNPHVTLPVFYPHL 202
Query: 150 KVGGYIFFRESCFHQ 164
K GG Q
Sbjct: 203 KHGGVCAVYVVNITQ 217
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 4e-08
Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 6/132 (4%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI-GLKCSVEFE 336
+ + VLDVGCG G + A V+G+D S + + L+ ++
Sbjct: 30 NPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLI 89
Query: 337 VADCTKKTYPENSFDVIYSR---DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGT 393
+ P DVI S +L ++ + K+L GG+V D C
Sbjct: 90 KGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSV-YPDICTISLV 148
Query: 394 PSVEFSEYIKQR 405
V R
Sbjct: 149 A-VSDVNKHADR 159
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 4e-05
Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 9/141 (6%)
Query: 27 EAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFI 85
E M+ D ++ ++ + ++ K VL+ G G G + AK A V+ +D
Sbjct: 11 EEMLKDKIRTESYRDF---IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS 67
Query: 86 DSVI--KKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY-LSDKEVEKLA 142
+ + +N + + + + ++ + VD++ S W+ + L + ++ +
Sbjct: 68 EILYQAMDIIRLNKLEDTITLIKGKI--EEVHLPVEKVDVIISEWMGYFLLFESMLDSVL 125
Query: 143 ERMVKWLKVGGYIFFRESCFH 163
K+L GG ++
Sbjct: 126 YAKNKYLAKGGSVYPDICTIS 146
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 19/186 (10%), Positives = 39/186 (20%), Gaps = 44/186 (23%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALER--AIGLKCSVEF 335
G ++D+G G A + D + +
Sbjct: 46 GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTP 105
Query: 336 EVADCTKKT---------------------------------YPENSFDVIYSRDTILHI 362
V + D + + +
Sbjct: 106 AVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA 165
Query: 363 ----QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQM 418
A + LKPGG ++ + + + ++ + Q
Sbjct: 166 CCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP-----SYMVGKREFSCVALEKGEVEQA 220
Query: 419 LKDAGF 424
+ DAGF
Sbjct: 221 VLDAGF 226
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 51.3 bits (122), Expect = 7e-08
Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 15/146 (10%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVEFEVA 338
KP + V+D+ GIG +A V+ I+ F +E ++ +
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164
Query: 339 DCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS---FGTPS 395
D + EN D I + ++ K G + + P
Sbjct: 165 DN-RDFPGENIADRIL----MGYVVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPF 219
Query: 396 VEFSEYIKQRGYDL-----HDVKSYG 416
F K+ GYD+ +K Y
Sbjct: 220 ETFKRITKEYGYDVEKLNELKIKRYA 245
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Score = 50.9 bits (120), Expect = 7e-08
Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 26/178 (14%)
Query: 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCS 332
+A+ + V D+GC G +V ++GID S M+ +
Sbjct: 32 LAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE 91
Query: 333 VEFEVA--DCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKS 390
+ E+ D S ++ L +D+ AL ++ L P G +++S+ +
Sbjct: 92 IPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151
Query: 391 FGTP-----SVEFSEYIKQRGYDLHDV----------------KSYGQMLKDAGFVDI 427
T ++ + GY +V +++ LK+ GF +
Sbjct: 152 EDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQV 209
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 51.0 bits (121), Expect = 8e-08
Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
L+PG KVLD+G G G A+K +G+D+ ++ A A F
Sbjct: 118 LRPGDKVLDLGTGSGV-LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL 176
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSE 400
++ + + + AL + + L PGG L++ K E
Sbjct: 177 EAALPFGPFDLLVANL----YAELHAALAPRYREALVPGGRALLTGILKDRAP---LVRE 229
Query: 401 YIKQRGYDLHDVKSYG 416
+ G+ + + G
Sbjct: 230 AMAGAGFRPLEEAAEG 245
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.4 bits (122), Expect = 8e-08
Identities = 43/202 (21%), Positives = 70/202 (34%), Gaps = 17/202 (8%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEV 337
KL L+PG +LDVGCG G +K+DV+VVG+ LS N + + + V
Sbjct: 57 KLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRV 116
Query: 338 ADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLI---------SD 386
+ + E D I S H + A F + L G +L+
Sbjct: 117 LLAGWEQFDEP-VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEI 175
Query: 387 YCKSFGTP-----SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQ 441
+ + ++F G L + + GF + + + L
Sbjct: 176 HERGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYAKTLD 235
Query: 442 RELDAIEKDKDAFIKDFSEVFC 463
A++ +K I SE
Sbjct: 236 LWSAALQANKGQAIALQSEEVY 257
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 50.6 bits (120), Expect = 2e-07
Identities = 41/209 (19%), Positives = 70/209 (33%), Gaps = 24/209 (11%)
Query: 278 KLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEV 337
KL+L+PG +LD+GCG G + ++DV+V+G+ LS N + + +
Sbjct: 56 KLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSP-RRKE 114
Query: 338 ADCTKKTYPENSFDVIYSRDTILHI---------QDKPALFKSFFKWLKPGGTVLISDYC 388
+ D I S H + FK F+ G +L+
Sbjct: 115 VRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174
Query: 389 -----------KSFGTPSVEFSEYIKQ---RGYDLHDVKSYGQMLKDAGFVDIIAEDRTE 434
+ + F ++I G L + +AG+
Sbjct: 175 IPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYHRIGA 234
Query: 435 QFVQVLQRELDAIEKDKDAFIKDFSEVFC 463
+V L DA++ KD I + C
Sbjct: 235 NYVPTLNAWADALQAHKDEAIALKGQETC 263
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 6/121 (4%)
Query: 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVN 96
D D V + P + +LE G+ G FT L + + ++ + I +
Sbjct: 3 DFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL 62
Query: 97 GHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIF 156
+ D + +L ++ D L WL GG +F
Sbjct: 63 KDGITYIHSR-----FEDAQLPRRYDNIVLTHVLEHIDDPV-ALLKRINDDWLAEGGRLF 116
Query: 157 F 157
Sbjct: 117 L 117
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 47.6 bits (112), Expect = 8e-07
Identities = 24/154 (15%), Positives = 47/154 (30%), Gaps = 18/154 (11%)
Query: 284 GQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK 343
+L++G G + + F+ + ++ S IS A R + +
Sbjct: 21 PGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGR----LKDGITYIHSRFED 75
Query: 344 TYPENSFDVIYSRDTILHIQDKPALFKSFF-KWLKPGGTVLISDYCKS-------FGTPS 395
+D I + HI D AL K WL GG + + +
Sbjct: 76 AQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGI 135
Query: 396 VEFSEYIKQRGYDLHDVKSYG-----QMLKDAGF 424
+ + + + + +Y + AG
Sbjct: 136 ISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 49.3 bits (116), Expect = 3e-07
Identities = 32/164 (19%), Positives = 50/164 (30%), Gaps = 7/164 (4%)
Query: 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK 330
A D + VLDVG G GG +A + + + A
Sbjct: 68 AFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEG 127
Query: 331 CSVEFEVADCTKKTYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYC 388
S +V + D I +L+ D + + L+PGG +LI +
Sbjct: 128 LSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 187
Query: 389 ----KSFGTPSVEFSEYIKQR-GYDLHDVKSYGQMLKDAGFVDI 427
SF E + G L + + + AG V
Sbjct: 188 DLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVE 231
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 47.7 bits (112), Expect = 9e-07
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 17/186 (9%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID 313
F + + D + VLDVG G GG +A + +
Sbjct: 53 ALADSFDALMSCDEDL-AYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV 111
Query: 314 LSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDK--PALFKS 371
A R + VA+ + DV+ +L+ D+ + +
Sbjct: 112 ELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRG 171
Query: 372 FFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH----------DVKSYGQMLKD 421
+ L+PGG +L+ D + ++ DL +
Sbjct: 172 CVRALEPGGRLLVLDRAD----VEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGS 227
Query: 422 AGFVDI 427
AG
Sbjct: 228 AGLALA 233
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 46.2 bits (108), Expect = 2e-06
Identities = 31/175 (17%), Positives = 64/175 (36%), Gaps = 7/175 (4%)
Query: 245 VQYKLNGI-LRYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMAD 303
V+ L G L+++ GV F + TK V + + +LD+GCG G +AD
Sbjct: 14 VEDILRGKKLKFKTDSGV-FSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALAD 72
Query: 304 K-FDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362
+ + I+ ++ + L V + + ++ I + I
Sbjct: 73 EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAG 132
Query: 363 -QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYG 416
+ + + + LK G + + K + ++Y+K ++ V G
Sbjct: 133 KEVLHRIIEEGKELLKDNGEIWVVIQTK---QGAKSLAKYMKDVFGNVETVTIKG 184
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 30/203 (14%), Positives = 65/203 (32%), Gaps = 19/203 (9%)
Query: 239 QQFLDNVQYKLNGILRYERVFGVGFVSTGGIETTKEFVAKL-----DLKPGQKVLDVGCG 293
+ + + ++G+L G G +S+ I ++++F+ + + LD G G
Sbjct: 16 KTYWKQIPPTVDGMLG-----GYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 70
Query: 294 IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353
IG + V +D++ + + A V + PE +
Sbjct: 71 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDV 130
Query: 354 YSRDTILHIQDKPAL---FKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410
++ L + L+P G ++I D G
Sbjct: 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI------LDDVDSSVCR 184
Query: 411 DVKSYGQMLKDAGFVDIIAEDRT 433
D+ +++ AG + E +
Sbjct: 185 DLDVVRRIICSAGLSLLAEERQE 207
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 10/187 (5%)
Query: 11 EIQKNYWMEHSANLTVEAMMLD-SKASDLDKEE-----RPEVLSLLPPYEGKTVLEFGAG 64
K YW + TV+ M+ S +D + + L+ GAG
Sbjct: 13 SKAKTYWKQIPP--TVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 70
Query: 65 IGRFT-GELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123
IGR T L V +D + + + + G D T DS D+
Sbjct: 71 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDV 130
Query: 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFY 183
++ W++ +L+D+ + + R L+ G I +++ Q G + + R+
Sbjct: 131 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM-AQEGVILDDVDSSVCRDLDVV 189
Query: 184 SKVFKEC 190
++
Sbjct: 190 RRIICSA 196
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (110), Expect = 2e-06
Identities = 27/185 (14%), Positives = 47/185 (25%), Gaps = 6/185 (3%)
Query: 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFM 105
++ VLE G G G T +L +KA V+A + +D + V
Sbjct: 13 IIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACE-LDPRLVAELHKRVQGTPVASK 71
Query: 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS 165
+ L D +N L Y + + +F RE
Sbjct: 72 LQVLVGDVLKTDLPFFDTCVAN--LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLV 129
Query: 166 GDSKRKHNPTHYREPRFYSKVFKECQIQDASGNSFELSLVGYKCIGAYVKNKKNQNQICW 225
K + R + + + N+F +
Sbjct: 130 AKPGDKL---YCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPPPINFQ 186
Query: 226 IWQKV 230
W +
Sbjct: 187 EWDGL 191
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Score = 45.5 bits (106), Expect = 3e-06
Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 14/158 (8%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
E A L P + +++G G G + +G++ S M K
Sbjct: 26 SELQAVKCLLPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEI------ARKRG 74
Query: 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFG 392
V + SFD TI + D K ++ LK GG +++ +
Sbjct: 75 VFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESF 134
Query: 393 TPSVEFSEYIKQRGYD---LHDVKSYGQMLKDAGFVDI 427
K Y + +++ AGF +
Sbjct: 135 LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEF 172
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 5e-06
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 2/124 (1%)
Query: 263 FVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMAD--KFDVHVVGIDLSINMIS 320
+S + + L G K LDVG G G A V+GID ++
Sbjct: 56 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVD 115
Query: 321 FALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGG 380
++ ++ + D I P + ++ LKPGG
Sbjct: 116 DSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 175
Query: 381 TVLI 384
+++
Sbjct: 176 RLIL 179
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 34/217 (15%), Positives = 59/217 (27%), Gaps = 48/217 (22%)
Query: 254 RYERVFGVGFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGID 313
Y+++ + E + +L LD+ CG G + KF + +D
Sbjct: 9 IYDKLIRADVDYKKWSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLCPKF-KNTWAVD 66
Query: 314 LSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD---VIYSRDTILHIQDKPALFK 370
LS M+S A + D + + S + I+ D FK
Sbjct: 67 LSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFK 126
Query: 371 SFFKWLKPGGTVLIS----------------------------------------DYCKS 390
+ LK GG + +
Sbjct: 127 AVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVR 186
Query: 391 FGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427
G F E ++R Y D++ + LK +
Sbjct: 187 DGEFYKRFDEEHEERAYKEEDIE---KYLKHGQLNIL 220
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 44.6 bits (104), Expect = 1e-05
Identities = 19/146 (13%), Positives = 46/146 (31%), Gaps = 2/146 (1%)
Query: 40 KEERPEVLSLLPPY--EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG 97
K+ ++ L+ G G T L K + A+D ++ + E
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80
Query: 98 HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157
+ S + + + + +++K + + LK GG F
Sbjct: 81 SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
Query: 158 RESCFHQSGDSKRKHNPTHYREPRFY 183
+ +++ ++ + + FY
Sbjct: 141 DINSYYKLSQVLGNNDFNYDDDEVFY 166
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 23/137 (16%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA------ 326
K L K G +V CG + AD VVG+++S I
Sbjct: 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSE 93
Query: 327 ------------IGLKCSVEFEVADCTKKT-YPENSFDVIYSRDTILHIQ--DKPALFKS 371
++ FD+I+ R ++ I D+ +
Sbjct: 94 EPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADT 153
Query: 372 FFKWLKPGGTVLISDYC 388
F L L+
Sbjct: 154 MFSLLGKKFQYLLCVLS 170
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 39.5 bits (91), Expect = 3e-04
Identities = 25/139 (17%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 287 VLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFAL---ERAIGLKCSVEFEVADCTK 342
++VG G G MA + D++ +GID+ +++S+AL + +
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT 94
Query: 343 KTYPENSFDVIYSRDTILHIQDK--------PALFKSFFKWLKPGGTVLISDYCKSFGTP 394
+ + D +Y + + + +F + L G + + K+
Sbjct: 95 DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEI----HFKTDNRG 150
Query: 395 SVEFS-EYIKQRGYDLHDV 412
E+S Q G L+ V
Sbjct: 151 LFEYSLVSFSQYGMKLNGV 169
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 36.0 bits (82), Expect = 0.004
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 10/115 (8%)
Query: 54 EGKTVLEFGAGIGRFTGELAKKAGH--VIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111
+ +E G+G G F +AK+ I +D SV+ + V
Sbjct: 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG 90
Query: 112 PDL--TFSEDSVDMMFSNWLLMYLS------DKEVEKLAERMVKWLKVGGYIFFR 158
DL F + +D ++ N+ + + + + L G I F+
Sbjct: 91 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Score = 39.4 bits (91), Expect = 4e-04
Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCS 332
+E + L ++PG +D G G G + V+G+D ++ A +
Sbjct: 8 QEALDLLAVRPGGVYVDATLG-GAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTV 66
Query: 333 VEFEVADCTKKTYPENS-------FDVIYSRDTILHIQDKPALFKSF----FKWLKPGGT 381
V+ + D+ S + D+ K F + L PGG
Sbjct: 67 VQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGR 126
Query: 382 VLISDYCKSF 391
+++ +
Sbjct: 127 LVVIAFHSLE 136
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 17/200 (8%), Positives = 38/200 (19%), Gaps = 48/200 (24%)
Query: 271 TTKEF--VAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA-- 326
+ G+ ++D+G G A + D
Sbjct: 40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE 99
Query: 327 ----------------IGLKCSVEFEVADCTKKTY-------------------PENSFD 351
I K + + D
Sbjct: 100 EPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPAD 159
Query: 352 VIYSRDTILHI----QDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGY 407
+ S + + L+PGG +L+ + + +
Sbjct: 160 ALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-----YLAGEARLTV 214
Query: 408 DLHDVKSYGQMLKDAGFVDI 427
+ + L +G+
Sbjct: 215 VPVSEEEVREALVRSGYKVR 234
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.9 bits (92), Expect = 5e-04
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVA 338
++PG +VLDV GG + A V+GID S I A E A G++ ++F V
Sbjct: 143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG 202
Query: 339 DCTKKTY----PENSFDVI---------YSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385
++ FD++ + +D ++ + + +K GG ++
Sbjct: 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTC 262
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 39.0 bits (89), Expect = 7e-04
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADC 340
LK +VLD+G G G ++ + VV +D S M+ A E+ E
Sbjct: 40 LKNPCRVLDLGGGTGKWSLFL-QERGFEVVLVDPSKEMLEVAREK----GVKNVVEAKAE 94
Query: 341 TKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387
V+ D + ++++K F + L P G ++ +
Sbjct: 95 DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 39.4 bits (91), Expect = 7e-04
Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 20/161 (12%)
Query: 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFA---LERAIGLKCSVEFEVA 338
KVL++ G A V +D S I +A A + + +
Sbjct: 131 DRPLKVLNLFGYTGVASLV-AAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE 189
Query: 339 DCTKKT----YPENSFDVI---------YSRDTILHIQ-DKPALFKSFFKWLKPGGTVLI 384
D K +++D+I + + + P + + L P L+
Sbjct: 190 DAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLV 249
Query: 385 SDYCKSFGTPSVEFSEYIKQRGYDLH-DVKSYGQMLKDAGF 424
S E +++ V S ++++AG
Sbjct: 250 LTAY-SIRASFYSMHELMRETMRGAGGVVASGELVIREAGL 289
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Score = 38.7 bits (89), Expect = 0.001
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 16/121 (13%)
Query: 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALE---RAIGLKCSVEFEV 337
G+ VL++ A + +DL+ + +L + + V
Sbjct: 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV 201
Query: 338 ADCTKKTY----PENSFDVI---------YSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
D ++D+I ++ +D L + + L G ++
Sbjct: 202 MDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIA 261
Query: 385 S 385
S
Sbjct: 262 S 262
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Score = 37.8 bits (87), Expect = 0.002
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 8/114 (7%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAIGLKCSVE 334
+L+P + ++++G GG + D D V+GID ++ +
Sbjct: 78 ELRP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQG 136
Query: 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388
T + E + +I+ + H + + L+ G +I D
Sbjct: 137 DCSDLTTFEHLREMAHPLIFIDNA--HANTFNIMKWAVDHLLEEGDYFIIEDMI 188
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 37.1 bits (85), Expect = 0.002
Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 15/132 (11%)
Query: 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC 331
+E + L + + +LD G GG + + ++GID+ ++ A E+
Sbjct: 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSD 72
Query: 332 SVE-----FEVADCTKKTYPENSFDVI-----YSRDTILHIQDKPALFKSF----FKWLK 377
V + AD KT D I S + + K F L
Sbjct: 73 RVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLN 132
Query: 378 PGGTVLISDYCK 389
PGG +++ +
Sbjct: 133 PGGRIVVISFHS 144
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 37.8 bits (87), Expect = 0.002
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 43 RPEVLSLLPPYEGKTVLEFGA--GIGRFTGELAKKAGHVIALDFIDSVIKKNE---EVNG 97
P+ SL EGK L GA GIGR + G + +++ +S E +
Sbjct: 10 GPQSASL----EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK 65
Query: 98 HFENVKFMCADVTSPD 113
+ + + A+V +
Sbjct: 66 NGSDAACVKANVGVVE 81
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 36.8 bits (84), Expect = 0.003
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 10/115 (8%)
Query: 54 EGKTVLEFGAGIGRFTGELAKK---------AGHVIALDFIDSVIKKNEEVNGHFENVKF 104
+ +E G G G+F +AK+ + +K +E N N+
Sbjct: 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA 88
Query: 105 MCADVTSPDLTFSEDSVDM-MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158
++ ++ + + GG I F+
Sbjct: 89 DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 37.2 bits (86), Expect = 0.003
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 54 EGKTVLEFGA--GIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111
+ K + G GIGR E G IA+ + + + V + DV+
Sbjct: 4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ 63
Query: 112 PD 113
P
Sbjct: 64 PG 65
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Score = 37.1 bits (85), Expect = 0.003
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVAD 339
DL GQKVL++G GIG +A + VV ++++ M ++A + + +++ + D
Sbjct: 67 DLHKGQKVLEIGTGIGYYTALIA-EIVDKVVSVEINEKMYNYASKL-LSYYNNIKLILGD 124
Query: 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLI 384
T E +D + T + K ++ LK GG +++
Sbjct: 125 GTLGYEEEKPYDRVVVWATAPTLLCK------PYEQLKEGGIMIL 163
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 37.3 bits (86), Expect = 0.003
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 54 EGKTVLEFGA--GIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVT 110
+ K + G GIG T +L + G V+ D D +K G + + F+ DVT
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVT 64
Query: 111 SPDLTFSEDSVDMMFSNWL 129
++ V + +
Sbjct: 65 ------KDEDVRNLVDTTI 77
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 36.9 bits (85), Expect = 0.003
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 54 EGKTVLEFGA--GIGRFTGE-LAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVT 110
+GK + G GIG ++ V+ V +K + G + ++F D +
Sbjct: 5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSS 64
Query: 111 SPD 113
D
Sbjct: 65 DED 67
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Score = 36.8 bits (84), Expect = 0.004
Identities = 15/84 (17%), Positives = 34/84 (40%)
Query: 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKF 104
++++ + E + E G+G G FT EL ++ V A++ + K E +N +
Sbjct: 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQV 71
Query: 105 MCADVTSPDLTFSEDSVDMMFSNW 128
+ D+ ++ +
Sbjct: 72 LNKDILQFKFPKNQSYKIFGNIPY 95
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.97 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.97 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.95 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.92 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.92 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.92 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.89 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.89 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.86 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.86 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.86 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.86 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.85 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.85 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.85 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.84 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.84 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.82 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.82 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.82 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.81 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.81 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.8 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.8 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.79 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.79 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.79 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.79 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.78 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.78 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.78 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.78 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.77 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.77 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.76 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.75 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.75 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.74 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.73 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.72 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.71 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.71 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.71 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.7 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.7 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.7 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.68 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.68 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.67 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.66 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.66 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.66 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.66 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.65 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.64 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.62 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.62 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.61 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.61 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.59 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.59 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.58 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.57 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.57 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.57 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.56 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.56 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.55 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.54 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.54 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.53 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.53 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.52 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.5 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.49 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.48 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.48 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.45 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.45 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.45 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.45 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.41 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.4 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.4 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.38 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.38 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.37 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.37 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.36 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.33 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.31 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.29 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.27 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.26 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.2 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.19 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.16 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.16 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.15 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.15 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.15 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.14 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.13 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.12 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.11 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.11 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.1 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.1 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.07 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 99.06 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.04 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.04 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.04 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 99.02 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.97 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.95 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.95 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.94 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.94 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.94 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.94 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.92 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.91 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.91 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.9 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.88 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.86 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.76 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.75 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.72 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.68 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.59 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.56 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.56 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.56 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.56 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.56 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.55 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.55 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.53 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.5 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.49 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.47 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.45 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.44 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.44 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.42 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.41 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.41 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.39 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.37 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.36 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.36 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.35 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.3 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.28 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.27 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.25 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.25 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.24 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.22 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.19 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.19 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.18 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.16 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.16 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.15 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.1 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.08 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.01 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.98 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.97 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 97.81 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.78 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.77 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.77 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 97.71 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.71 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.6 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.51 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.49 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.46 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.33 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.33 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.31 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.26 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.24 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.19 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.16 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.14 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.13 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.09 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.01 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.98 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.95 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.92 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.91 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.9 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.82 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.77 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.76 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.68 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.59 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.48 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.48 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.17 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.03 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.96 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.93 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.9 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.88 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.88 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.85 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.82 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.75 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.65 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.63 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.55 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.5 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.4 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 95.32 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.26 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.25 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 95.15 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.02 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.76 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.65 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.6 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.4 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 94.34 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.32 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.3 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 94.28 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.21 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.11 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 93.64 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.49 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.13 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.89 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.75 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.7 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 92.66 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.46 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 92.43 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.42 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.19 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.19 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.19 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.96 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.95 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.87 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.83 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.72 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.02 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 90.98 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.77 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.5 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 90.45 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.25 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.05 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 89.82 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 89.68 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 89.58 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.23 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 89.13 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 87.85 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.43 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 87.31 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 87.25 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 86.87 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.71 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.62 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.55 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 86.24 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.21 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 85.98 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 85.77 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 85.55 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 85.43 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 85.27 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.2 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.13 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 84.91 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.8 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 84.78 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.09 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 84.07 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 83.9 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 83.68 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.5 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 83.49 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.29 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 83.07 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 82.9 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.73 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 82.73 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 82.55 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 82.44 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.98 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 81.68 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.63 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 81.57 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.25 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.13 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 81.08 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 80.78 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 80.73 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 80.66 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 80.6 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 80.45 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 80.45 |
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=7.1e-31 Score=244.29 Aligned_cols=225 Identities=22% Similarity=0.269 Sum_probs=184.1
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhcc--ccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGV--GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~ 312 (485)
+.|..|++. +.|++. +|.. .........+++.+++++.+++|.+|||||||+|.++..++++++++|+|+
T Consensus 18 ~fy~~~Lg~~~~YS~~-------~~~~~~~tL~~Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~gi 90 (291)
T d1kpia_ 18 EFFKLWLDPSMTYSCA-------YFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGL 90 (291)
T ss_dssp HHHHHHSCTTCCCSCC-------CCSSTTCCHHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE
T ss_pred HHHHHhcCCCCCeeeE-------EecCCCCCHHHHHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeec
Confidence 558888776 777775 1111 111111235678889999999999999999999999999999889999999
Q ss_pred eCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEcccccccCC---------HHHHHHHHHhcCCCCcE
Q 043471 313 DLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQD---------KPALFKSFFKWLKPGGT 381 (485)
Q Consensus 313 D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~ 381 (485)
++|+++++.|+++.. ++..++.+...|.. +++++||.|+|.++++|+.+ .+.++++++++|||||+
T Consensus 91 t~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~ 167 (291)
T d1kpia_ 91 TLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGR 167 (291)
T ss_dssp ESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCE
T ss_pred cchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999876 45567788777763 45689999999999999975 57999999999999999
Q ss_pred EEEEecccCCCC---------C------ChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHH
Q 043471 382 VLISDYCKSFGT---------P------SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDA 446 (485)
Q Consensus 382 l~i~~~~~~~~~---------~------~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~ 446 (485)
++++++...... + ...+.+++.|.+ .+++..++...++++||++.++++.+.||.+|+..|+++
T Consensus 168 ~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg-~lps~~~~~~~~e~~gl~v~~~~~~~~hYa~TL~~W~~~ 246 (291)
T d1kpia_ 168 MLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG-RLPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADA 246 (291)
T ss_dssp EEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC-CCCCHHHHHHHHHHHTCEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC-CCCCHHHHHhhhcccccccceeeeccccHHHHHHHHHHH
Confidence 999987643311 1 013455666655 578999999999999999999999999999999999999
Q ss_pred HHhcHHHHHHHhhhhhhhhhhhhcc
Q 043471 447 IEKDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
+.++++++.+.+++++.++|...|+
T Consensus 247 f~~~~~ei~~l~g~~~~r~W~~yl~ 271 (291)
T d1kpia_ 247 LQAHKDEAIALKGQETCDIYMHYLR 271 (291)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999999999999999999887765
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=3.7e-30 Score=238.73 Aligned_cols=224 Identities=23% Similarity=0.259 Sum_probs=182.0
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhcc--ccccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEE
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGV--GFVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGI 312 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~ 312 (485)
+.|+.+++. +.|++. +|.. .........+++.+++++.++||.+|||||||+|.++.+++++.|++|+|+
T Consensus 19 ~fy~~~Lg~~~~YS~g-------~~~~~~~tL~eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~gi 91 (285)
T d1kpga_ 19 DFFRLFLDPTQTYSCA-------YFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGL 91 (285)
T ss_dssp HHHTTTSCTTCCCSCC-------CCSSTTCCHHHHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEE
T ss_pred HHHHHhCCCCCcEeeE-------EeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEE
Confidence 457777776 777765 1111 111112235678899999999999999999999999999999989999999
Q ss_pred eCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccccccc--CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 313 DLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI--QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 313 D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
++|+.+++.|+++.. ++..++++..+|...++ ++||.|++.++++|+ ++...+++++.|+|||||+++++++.
T Consensus 92 t~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 92 TLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp ESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred eccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 999999999999865 45578999999987764 689999999999999 46689999999999999999998765
Q ss_pred cCCC-------CC--------ChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHHhcHHH
Q 043471 389 KSFG-------TP--------SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIEKDKDA 453 (485)
Q Consensus 389 ~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (485)
.... .+ ...+.+++.|.+ .+++.+++.++++++||++.++++.+.||.+|+..|.+++.+++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg-~lPsl~~~~~~~e~agf~v~~~~~~~~hYarTl~~W~~~f~~~~~e 247 (285)
T d1kpga_ 169 GLHPKEIHERGLPMSFTFARFLKFIVTEIFPGG-RLPSIPMVQECASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQ 247 (285)
T ss_dssp ECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTC-CCCCHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccCchhhccccCCcchhhhchhhHHHHHhccCC-CCCChhhHHHHHHHhchhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3211 11 123456666655 4689999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhhhhc
Q 043471 454 FIKDFSEVFCFFHLDCL 470 (485)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (485)
+.+.+++++.+.|...|
T Consensus 248 i~~~~~~~~~rrw~~Yl 264 (285)
T d1kpga_ 248 AIALQSEEVYERYMKYL 264 (285)
T ss_dssp HHHHSCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 99998888777665544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=3.5e-30 Score=239.20 Aligned_cols=220 Identities=22% Similarity=0.248 Sum_probs=179.8
Q ss_pred hhHHHhhhh-hhccccchhHHHHHhccccccCC-------chHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC
Q 043471 236 RGFQQFLDN-VQYKLNGILRYERVFGVGFVSTG-------GIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV 307 (485)
Q Consensus 236 ~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~ 307 (485)
+.|+.|+|. |.|++. ++... ...+.+.+++.+.++||.+|||||||+|.++..++++.++
T Consensus 9 ~fy~~~ld~~m~YS~~------------~~~~~~~tL~~AQ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~ 76 (280)
T d2fk8a1 9 DFFALFQDPTRTYSCA------------YFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV 76 (280)
T ss_dssp HHHTTTSCTTCCCSCC------------CCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC
T ss_pred HHHHHhCCCCCcEeeE------------EeCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCce
Confidence 567788877 778775 33222 2356788999999999999999999999999999988899
Q ss_pred EEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCCCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEE
Q 043471 308 HVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTYPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 308 ~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~ 383 (485)
+|+|+|+|+++++.|++++.. +..++.+...|..+. +++||.|++.++++|+. +.+.+|++++++|||||+++
T Consensus 77 ~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 77 NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence 999999999999999999864 445677777776654 37899999999999995 45899999999999999999
Q ss_pred EEecccCCCCC---------------ChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeecchHHHHHHHHHHHHHH
Q 043471 384 ISDYCKSFGTP---------------SVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTEQFVQVLQRELDAIE 448 (485)
Q Consensus 384 i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
+++........ ...+.+++.|.+ .+++.+++.+.++++||++.++++.+.||.+|+..|++++.
T Consensus 154 i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg-~lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~~W~~~f~ 232 (280)
T d2fk8a1 154 VQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGG-RLPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQ 232 (280)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTC-CCCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHHHHHHHHH
T ss_pred EEEeeccCcchhhhcccccccccccccchhhhhccCCC-cccchHhhhhhHHhhccccceeeecccCHHHHHHHHHHHHH
Confidence 98754322110 123445555655 47899999999999999999999999999999999999999
Q ss_pred hcHHHHHHHhhhhhhhhhhhhcc
Q 043471 449 KDKDAFIKDFSEVFCFFHLDCLS 471 (485)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~ 471 (485)
.+++++.+.+.+++.++|...|.
T Consensus 233 ~~~~~i~~~~~~~~~r~w~~yl~ 255 (280)
T d2fk8a1 233 SNKDKAIEVTSEEVYNRYMKYLR 255 (280)
T ss_dssp HTHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999987777777765543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.95 E-value=5.9e-27 Score=219.63 Aligned_cols=188 Identities=23% Similarity=0.317 Sum_probs=157.1
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
.+.....++++.+|||||||+|.++..++++++++|+|+|+|+.|++.|+++.. ++..++++.++|+.++|+++++||
T Consensus 58 ~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD 137 (282)
T d2o57a1 58 ELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYD 137 (282)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccc
Confidence 344445788999999999999999999998878899999999999999998875 566789999999999999999999
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhc-CCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQR-GYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
+|++..+++|++++..+|++++++|||||++++.++.............+.... ...+.+.+.+.++++++||+++.+.
T Consensus 138 ~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 138 FIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 999999999999999999999999999999999988766555444443333332 2345688999999999999999999
Q ss_pred ecchHHHHHHHHHHHHHHhcHHHHHHHhhhh
Q 043471 431 DRTEQFVQVLQRELDAIEKDKDAFIKDFSEV 461 (485)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (485)
+.+.++...+..+...+.....++.....++
T Consensus 218 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 248 (282)
T d2o57a1 218 SRPDSLVHHYSKVKAELIKRSSEIASFCSPE 248 (282)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHTTTSCHH
T ss_pred ECcHhHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 9998888888888887777666555554444
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=5e-26 Score=207.03 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=132.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
+.++++.+.++++.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...+ .+++++++|+.++|+++++|
T Consensus 4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~f 82 (231)
T d1vl5a_ 4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF 82 (231)
T ss_dssp HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccc
Confidence 467888899999999999999999999999988 6799999999999999999876433 58999999999999999999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH----HHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY----IKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
|+|+|..+++|++|+..++++++++|||||++++.++..+.......+..+ ....+...++..++.++|+++||++
T Consensus 83 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 162 (231)
T d1vl5a_ 83 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFEL 162 (231)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEE
T ss_pred ccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCCCEE
Confidence 999999999999999999999999999999999988765433222222111 1222446778899999999999998
Q ss_pred EEEee
Q 043471 427 IIAED 431 (485)
Q Consensus 427 ~~~~~ 431 (485)
++++.
T Consensus 163 ~~~~~ 167 (231)
T d1vl5a_ 163 EELHC 167 (231)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.92 E-value=3.2e-25 Score=201.85 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=133.0
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~f 350 (485)
+.-+++.+.++||.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++...+ .++.++++|+.++|+++++|
T Consensus 5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 445778889999999999999999999999988 5799999999999999999876332 47999999999999999999
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH----HHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS----EYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
|+|+|..+++|++|+..++++++|+|||||++++.++..........+. ....+.+....+..++..+++++||.+
T Consensus 84 D~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~ 163 (234)
T d1xxla_ 84 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAY 163 (234)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEE
T ss_pred ceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCce
Confidence 9999999999999999999999999999999999876654332211221 122233456678899999999999988
Q ss_pred EEEeec
Q 043471 427 IIAEDR 432 (485)
Q Consensus 427 ~~~~~~ 432 (485)
..+...
T Consensus 164 ~~~~~~ 169 (234)
T d1xxla_ 164 QDIQKW 169 (234)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 776543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.92 E-value=2.7e-25 Score=203.99 Aligned_cols=181 Identities=24% Similarity=0.405 Sum_probs=147.7
Q ss_pred HHHHHHHhhhcCcCcchhhhhcCCC-cCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChH
Q 043471 10 REIQKNYWMEHSANLTVEAMMLDSK-ASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDS 87 (485)
Q Consensus 10 ~~~~~~yw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~ 87 (485)
+...+.||+...+ +.+.|+..-. ....+....+.+++.++..++.+|||+|||+|+++..|+.+ +.+|+|+|+|+.
T Consensus 50 Y~~~~~yW~~~~~--t~~~mlgg~~~~~~~d~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~ 127 (254)
T d1xtpa_ 50 YGKALEYWRTVPA--TVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKH 127 (254)
T ss_dssp HHHHHHHHHTSCS--SHHHHTTTCGGGHHHHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH
T ss_pred hhchhhhhhcCch--hcccccCCccccchhhHHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHH
Confidence 4567889998666 4556654321 12234456678899999888999999999999999988876 567999999999
Q ss_pred HHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCc
Q 043471 88 VIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGD 167 (485)
Q Consensus 88 ~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 167 (485)
|++.|+++....++++++++|+.+ +++++++||+|+|.++++|+++++..+++++++++|+|||++++.+........
T Consensus 128 ~l~~a~~~~~~~~~~~~~~~d~~~--~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~ 205 (254)
T d1xtpa_ 128 MLEEAKRELAGMPVGKFILASMET--ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF 205 (254)
T ss_dssp HHHHHHHHTTTSSEEEEEESCGGG--CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE
T ss_pred HHHhhhccccccccceeEEccccc--cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence 999999998766789999999998 566789999999999999999887889999999999999999999877655544
Q ss_pred cccCCCCCCCCChhHHHHHhhhcceec
Q 043471 168 SKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
..+..+...+++.+.++++|+++||..
T Consensus 206 ~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 206 LVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp EEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred eecccCCceeCCHHHHHHHHHHcCCEE
Confidence 445555666778899999999999854
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.2e-24 Score=197.63 Aligned_cols=168 Identities=21% Similarity=0.187 Sum_probs=140.9
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK 343 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~ 343 (485)
+...+.+..+.+.+.+.||.+|||||||+|..+..++++.+++|+|+|+|+.|++.|+++.. ++..++++.++|+.++
T Consensus 16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 44567888899999999999999999999999999998878899999999999999999865 4556799999999997
Q ss_pred CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcC-CCCCCHHHHHHHHHhC
Q 043471 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRG-YDLHDVKSYGQMLKDA 422 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~a 422 (485)
+++++||+|+|..+++|++|+..++++++++|||||++++.++................... ..+.+...+...++++
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 174 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAFDDL 174 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHHHTT
T ss_pred -cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHHHHc
Confidence 46789999999999999999999999999999999999999876655544444433332211 2466888999999999
Q ss_pred CCeEEEEeecch
Q 043471 423 GFVDIIAEDRTE 434 (485)
Q Consensus 423 Gf~~~~~~~~~~ 434 (485)
||+++.......
T Consensus 175 G~~~v~~~~~~~ 186 (245)
T d1nkva_ 175 GYDVVEMVLADQ 186 (245)
T ss_dssp TBCCCEEEECCH
T ss_pred CCEEEEEEeCCH
Confidence 999887765543
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.89 E-value=1.2e-23 Score=191.08 Aligned_cols=149 Identities=13% Similarity=0.250 Sum_probs=121.6
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
...++++.++.+++.+|||||||+|.++..+++++.+|+|+|+|++|++.|+++.. ..++++++++|+++ ++++++
T Consensus 3 ~~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~--l~~~~~ 80 (231)
T d1vl5a_ 3 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ--MPFTDE 80 (231)
T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C--CCSCTT
T ss_pred hHHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccc--cccccc
Confidence 34678888999999999999999999999999999999999999999999988753 34689999999998 677899
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------cCCCCCCCCChhHHHHHhhhc
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------RKHNPTHYREPRFYSKVFKEC 190 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 190 (485)
+||+|+|..+++|+++ ..+++++++++|||||++++.++......... ...........+.+...++++
T Consensus 81 ~fD~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 158 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA 158 (231)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHH
T ss_pred ccccccccccccccCC--HHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHC
Confidence 9999999999999998 66999999999999999999876543322111 012222333567788999999
Q ss_pred ceec
Q 043471 191 QIQD 194 (485)
Q Consensus 191 ~~~~ 194 (485)
||..
T Consensus 159 Gf~~ 162 (231)
T d1vl5a_ 159 GFEL 162 (231)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 9854
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.6e-23 Score=188.81 Aligned_cols=141 Identities=18% Similarity=0.297 Sum_probs=116.3
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC--CCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF--ENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
...++.+|||||||+|.++..|+++ +.+|+|||+|++|++.|++++... ++++|+++|+++ +++++++||+|++.
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~--~~~~~~~fD~I~~~ 134 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQD--FTPEPDSYDVIWIQ 134 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGG--CCCCSSCEEEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccc--cccccccccccccc
Confidence 4456789999999999999998765 568999999999999999986542 468999999998 55678999999999
Q ss_pred hhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 128 WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
.+++|+++++..+++++++++|+|||.+++.+........ .......+.++.+.++++|+++||..
T Consensus 135 ~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~aGf~i 200 (222)
T d2ex4a1 135 WVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI-LDDVDSSVCRDLDVVRRIICSAGLSL 200 (222)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE-EETTTTEEEEBHHHHHHHHHHTTCCE
T ss_pred cccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc-cccCCceeeCCHHHHHHHHHHcCCEE
Confidence 9999999877889999999999999999998776543222 22334445567889999999999954
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=7.9e-23 Score=185.87 Aligned_cols=147 Identities=19% Similarity=0.257 Sum_probs=119.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCe
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
.-+++.+..++|.||||||||+|.++..|++++.+|+|+|+|+.|++.|+++... .+++.++++|+++ +++++++|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~--~~~~~~~f 83 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES--LPFPDDSF 83 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTB--CCSCTTCE
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccc--cccccccc
Confidence 4567888899999999999999999999999999999999999999999987532 3589999999988 77889999
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccc---------cCCCCCCCCChhHHHHHhhhcce
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSK---------RKHNPTHYREPRFYSKVFKECQI 192 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 192 (485)
|+|+|..+++|+++ ...++++++++|||||++++.+.......... .............+..+++++||
T Consensus 84 D~v~~~~~l~~~~d--~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf 161 (234)
T d1xxla_ 84 DIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQL 161 (234)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTE
T ss_pred ceeeeeceeecccC--HHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCC
Confidence 99999999999998 66999999999999999999765433221110 01112222356778889999988
Q ss_pred ec
Q 043471 193 QD 194 (485)
Q Consensus 193 ~~ 194 (485)
..
T Consensus 162 ~~ 163 (234)
T d1xxla_ 162 AY 163 (234)
T ss_dssp EE
T ss_pred ce
Confidence 43
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=5.8e-22 Score=181.50 Aligned_cols=157 Identities=22% Similarity=0.299 Sum_probs=127.0
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
......+++.+...++.+|||+|||+|.++..++.+...+|+++|+|+.|++.|+++..... ++++.++|+.+++++++
T Consensus 79 ~~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~-~~~~~~~d~~~~~~~~~ 157 (254)
T d1xtpa_ 79 IEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP-VGKFILASMETATLPPN 157 (254)
T ss_dssp HHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSS-EEEEEESCGGGCCCCSS
T ss_pred HHHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccc-cceeEEccccccccCCC
Confidence 34567788888888888999999999999999887755689999999999999999876443 68999999999998889
Q ss_pred CccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeE
Q 043471 349 SFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVD 426 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 426 (485)
+||+|++..+++|+++. .++|++++++|||||.++|.+........... ...+....+.+.+.++++++||++
T Consensus 158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d-----~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD-----KEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE-----TTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred ccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec-----ccCCceeCCHHHHHHHHHHcCCEE
Confidence 99999999999999765 58899999999999999998765443211100 011112457889999999999999
Q ss_pred EEEee
Q 043471 427 IIAED 431 (485)
Q Consensus 427 ~~~~~ 431 (485)
+..+.
T Consensus 233 i~~~~ 237 (254)
T d1xtpa_ 233 VKEAF 237 (254)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 87654
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=5.9e-22 Score=176.70 Aligned_cols=138 Identities=18% Similarity=0.273 Sum_probs=111.7
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
.++.+|||||||+|.++..+. +++|+|+|+.|++.|+++ ++.+.++|+.++++++++||+|+|..+++|
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR------GVFVLKGTAENLPLKDESFDFALMVTTICF 103 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc------cccccccccccccccccccccccccccccc
Confidence 345689999999999988774 358999999999999875 689999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH----HHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 362 IQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY----IKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++|+.+++++++++|+|||.+++.++........ ..... ....+..+++.+++.++|+++||+++++..
T Consensus 104 ~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 104 VDDPERALKEAYRILKKGGYLIVGIVDRESFLGR-EYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHH-HHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccccchhhhhhcCCCCceEEEEecCCcchhHH-hhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 9999999999999999999999998654321100 00000 001223567899999999999999887754
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=6.7e-22 Score=178.05 Aligned_cols=146 Identities=18% Similarity=0.167 Sum_probs=119.1
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
...++.+|||||||+|.++..++++...+|+|+|+|+.|++.|++++...+ .++++.++|+.++++++++||+|++..+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 345678999999999999999887766799999999999999999876432 4679999999999988899999999999
Q ss_pred ccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 359 ILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 359 ~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
++|+++. .+++++++++|||||.+++.+.......... ...+....+.+.+.++++++||+++..+.
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILD------DVDSSVCRDLDVVRRIICSAGLSLLAEER 205 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEE------TTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccc------cCCceeeCCHHHHHHHHHHcCCEEEEEEE
Confidence 9999764 5799999999999999999976554322111 01111335789999999999999988765
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.86 E-value=3.1e-21 Score=173.96 Aligned_cols=144 Identities=16% Similarity=0.143 Sum_probs=116.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++.+|||||||+|.++..++++ +.+|+|+|+|+.+++.|+++.. .++.+..+|+.+.++ +++||+|++.++++|+
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~---~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~ 94 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQL-PRRYDNIVLTHVLEHI 94 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCCC-SSCEEEEEEESCGGGC
T ss_pred CCCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc---ccccccccccccccc-ccccccccccceeEec
Confidence 4668999999999999999987 6799999999999999998864 379999999988875 5899999999999999
Q ss_pred CCHHHHHHHHH-hcCCCCcEEEEEecccCCC------------CCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 363 QDKPALFKSFF-KWLKPGGTVLISDYCKSFG------------TPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 363 ~~~~~~l~~~~-~~LkpgG~l~i~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
+|+..++++++ ++|||||.++++.++.... .............+...++.+++.++++++||+++..
T Consensus 95 ~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 95 DDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 99999999998 8999999999987543210 0000001111223446779999999999999999876
Q ss_pred ee
Q 043471 430 ED 431 (485)
Q Consensus 430 ~~ 431 (485)
+.
T Consensus 175 ~~ 176 (225)
T d2p7ia1 175 SG 176 (225)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.85 E-value=2.7e-21 Score=180.60 Aligned_cols=145 Identities=19% Similarity=0.217 Sum_probs=116.9
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCCCCCCCCe
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+....+..++.+|||||||+|.++..|+++ +++|+|+|+|+.|++.|+++.. ..++++++++|+.+ +|+++++|
T Consensus 59 l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~--l~~~~~sf 136 (282)
T d2o57a1 59 LAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE--IPCEDNSY 136 (282)
T ss_dssp HHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS--CSSCTTCE
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccc--cccccccc
Confidence 344457788999999999999999999987 7899999999999999998743 23589999999998 67889999
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHHHhhhcceec
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
|+|+|..+++|+++ ...+++++.++|||||.+++.++.......... ........+.+.+...++++||..
T Consensus 137 D~V~~~~~l~h~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~ 213 (282)
T d2o57a1 137 DFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVT 213 (282)
T ss_dssp EEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHHHHHHHHHHTTEEE
T ss_pred chhhccchhhhccC--HHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHHHHHHHHHHcCCce
Confidence 99999999999998 569999999999999999998776443221111 111123346788899999999854
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.85 E-value=6.8e-21 Score=171.75 Aligned_cols=148 Identities=18% Similarity=0.304 Sum_probs=114.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCCCCCCccEEEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTYPENSFDVIYS 355 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~~~~~fD~i~~ 355 (485)
.+++.+|||+|||+|..+..+++.. +++|+|+|+|+.|++.|++++...+ .++.+..+|..+.+ ...+|+|++
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~ 114 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVIL 114 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEE
Confidence 5678899999999999999998753 6799999999999999999886544 45666677776554 568999999
Q ss_pred cccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh-----HHHHHH----------------hcCCCCCCH
Q 043471 356 RDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE-----FSEYIK----------------QRGYDLHDV 412 (485)
Q Consensus 356 ~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-----~~~~~~----------------~~~~~~~~~ 412 (485)
..+++|++ ++.++|++++|+|||||.+++.+........... +..+.. .......+.
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 194 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSI 194 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCH
T ss_pred eeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCH
Confidence 99999984 7889999999999999999999876544322111 000000 011245688
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 043471 413 KSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~ 430 (485)
+++.++|+++||+.+++-
T Consensus 195 ~~~~~~L~~aGF~~v~~~ 212 (225)
T d1im8a_ 195 ETHKVRLKNVGFSQVELW 212 (225)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHcCCCceEEe
Confidence 999999999999988753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.85 E-value=3.2e-21 Score=174.10 Aligned_cols=115 Identities=34% Similarity=0.546 Sum_probs=101.9
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
+..++... ++++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.++.++.+|+.++++++++||
T Consensus 27 ~~~~~~~~-l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD 104 (226)
T d1ve3a1 27 LEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD 104 (226)
T ss_dssp HHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred HHHHHHHh-cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence 44555553 567789999999999999999987 7899999999999999999887666678899999999999999999
Q ss_pred EEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 352 VIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|+|..+++|++ ++.++|+++.++|||||++++....
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999999996 6778999999999999999988654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=6.2e-21 Score=174.41 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=123.7
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTS 111 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~ 111 (485)
.+.+.+....+.+.+...+|.+|||||||+|..+..++++ +.+|+|||+|+.|++.|+++.. ..++++|+++|+.+
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~ 94 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG 94 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhh
Confidence 3456677788999999999999999999999999999887 7899999999999999988743 22479999999988
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------CCCCCCCCChhHHHH
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------KHNPTHYREPRFYSK 185 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 185 (485)
+ +++++||+|+|..+++|+++ ...++++++++|||||++++.++.......... ......+.+...+..
T Consensus 95 --~-~~~~~fD~v~~~~~~~~~~d--~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 95 --Y-VANEKCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVG 169 (245)
T ss_dssp --C-CCSSCEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHH
T ss_pred --c-cccCceeEEEEEehhhccCC--HHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHH
Confidence 4 36789999999999999998 669999999999999999998775443221111 111122346677889
Q ss_pred Hhhhcceec
Q 043471 186 VFKECQIQD 194 (485)
Q Consensus 186 ~~~~~~~~~ 194 (485)
.++++||..
T Consensus 170 ~~~~aG~~~ 178 (245)
T d1nkva_ 170 AFDDLGYDV 178 (245)
T ss_dssp HHHTTTBCC
T ss_pred HHHHcCCEE
Confidence 999999854
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.84 E-value=1.2e-20 Score=175.76 Aligned_cols=156 Identities=18% Similarity=0.245 Sum_probs=121.0
Q ss_pred HHHHHc-CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 274 EFVAKL-DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 274 ~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+++.+ .+.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+.++++.++|+.+++++ ++|
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~-~~f 95 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELN-DKY 95 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCS-SCE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccccc-CCc
Confidence 344443 45677899999999999999999865 46999999999999999999887777899999999998875 579
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCC--------CCC------ChhHHHHH----HhcCCCCCCH
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF--------GTP------SVEFSEYI----KQRGYDLHDV 412 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--------~~~------~~~~~~~~----~~~~~~~~~~ 412 (485)
|+|+|..+++|++++..++++++++|||||++++.++.... ... ...+...+ ...+......
T Consensus 96 D~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 175 (281)
T d2gh1a1 96 DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG 175 (281)
T ss_dssp EEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGG
T ss_pred eEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999998754211 110 11122111 1122222223
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 043471 413 KSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 413 ~~~~~~l~~aGf~~~~~~ 430 (485)
..+..+|+++||+.+++.
T Consensus 176 ~~l~~~l~eaGf~~i~~~ 193 (281)
T d2gh1a1 176 MKIPIYLSELGVKNIECR 193 (281)
T ss_dssp GTHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 568889999999998764
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=4e-21 Score=173.52 Aligned_cols=107 Identities=21% Similarity=0.314 Sum_probs=95.9
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLM 131 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~ 131 (485)
+++.+|||||||+|.++..|++.+.+|+|+|+|++|++.|+++... ..++.++++|+.+ +++++++||+|+|..+++
T Consensus 36 ~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~--l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 36 KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARK--LSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTS--CCSCTTCEEEEEEESCGG
T ss_pred CCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccccc--ccccCcCceEEEEecchh
Confidence 3567999999999999999999999999999999999999987532 2478999999988 678899999999999999
Q ss_pred ccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 132 YLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+++.+..++++++.++|||||.+++..++
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 998777889999999999999999997654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.83 E-value=1.2e-20 Score=166.92 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=112.7
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC--------------CCeEEEEee
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF--------------ENVKFMCAD 108 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~~d 108 (485)
.++++..+...++.+|||+|||+|+.+.+||++|.+|+|+|+|++|++.|+++.... ..++++++|
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 455677788889999999999999999999999999999999999999999987532 356889999
Q ss_pred ccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 109 VTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 109 ~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
+..++ +.....||+|++..+++|+++..+..++++++++|||||.+++......... ...+.+..+.+.+++++.
T Consensus 89 ~~~l~-~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~----~~~p~~~~~~~el~~l~~ 163 (201)
T d1pjza_ 89 FFALT-ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----LEGPPFSVPQTWLHRVMS 163 (201)
T ss_dssp CSSST-HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----SSSCCCCCCHHHHHHTSC
T ss_pred ccccc-cccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccccc----CCCccccCCHHHHHHHhC
Confidence 87732 1335689999999999999988889999999999999999888655443221 122334446677777664
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=5e-21 Score=175.23 Aligned_cols=100 Identities=17% Similarity=0.259 Sum_probs=89.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhh-hhhhc
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN-WLLMY 132 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~-~~~~~ 132 (485)
++.+|||||||+|.++..|++.|.+|+|+|+|+.|++.|+++.. ..++++|+++ +++++++||+|+|. .+++|
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~--l~~~~~~fD~ii~~~~~~~~ 115 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----KNVVEAKAED--LPFPSGAFEAVLALGDVLSY 115 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----SCEEECCTTS--CCSCTTCEEEEEECSSHHHH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc----cccccccccc--cccccccccceeeecchhhh
Confidence 57799999999999999999999999999999999999999743 3477899988 67889999999975 68999
Q ss_pred cChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 133 LSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++ ..++++++.++|||||+++++.++
T Consensus 116 ~~d--~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 116 VEN--KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp CSC--HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred hhh--HHHHHHHHHhhcCcCcEEEEEECC
Confidence 998 558999999999999999998654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.82 E-value=1.2e-20 Score=166.54 Aligned_cols=138 Identities=18% Similarity=0.213 Sum_probs=103.8
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
++..+...++++|||||||+|..+.+|+++|.+|+|+|+|+.|++.++++.. ..+++.+...|+.... ++++||+
T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~ 98 (198)
T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT---FDGEYDF 98 (198)
T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC---CCCCEEE
T ss_pred HHHHcccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc---ccccccE
Confidence 3444444455699999999999999999999999999999999999987653 2357899999988743 4689999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhh
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFK 188 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (485)
|+|..+++|++++.+.++++++.++|+|||++++........ ......+.+......+++.+.
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~--~~~~~~~~~~~~~~el~~~~~ 161 (198)
T d2i6ga1 99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPD--FPCTVGFPFAFKEGELRRYYE 161 (198)
T ss_dssp EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-----------CCCCBCTTHHHHHTT
T ss_pred EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCcc--CCCCCCCCCccCHHHHHHHhC
Confidence 999999999988778899999999999999999976543221 111122223334455666664
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.82 E-value=1.5e-19 Score=165.61 Aligned_cols=159 Identities=21% Similarity=0.211 Sum_probs=125.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~ 347 (485)
....+++.+.+.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++++. ++..+++++.+|+.+. .+
T Consensus 68 ~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~- 144 (253)
T d1tw3a2 68 AFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LP- 144 (253)
T ss_dssp TTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CS-
T ss_pred HHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cc-
Confidence 44677888888888999999999999999999987 679999998 678999988876 4557899999998653 23
Q ss_pred CCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH-----HHhcCCCCCCHHHHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY-----IKQRGYDLHDVKSYGQMLK 420 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~ 420 (485)
.+||+|++..++||+++. .++|++++++|||||+++|.+............... +...+...++.++|.++++
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~ 224 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAA 224 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHH
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHH
Confidence 579999999999999765 478999999999999999998654433222111111 1112335678999999999
Q ss_pred hCCCeEEEEeec
Q 043471 421 DAGFVDIIAEDR 432 (485)
Q Consensus 421 ~aGf~~~~~~~~ 432 (485)
++||+++++...
T Consensus 225 ~AGf~~~~v~~~ 236 (253)
T d1tw3a2 225 SAGLVVEEVRQL 236 (253)
T ss_dssp HTTEEEEEEEEE
T ss_pred HCCCeEEEEEEC
Confidence 999999887654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7.8e-20 Score=165.05 Aligned_cols=140 Identities=13% Similarity=0.141 Sum_probs=113.7
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC-------------------CCCeEEE
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH-------------------FENVKFM 105 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~-------------------~~~~~~~ 105 (485)
.+-+.+...++.+|||+|||+|..+.+||++|++|+|||+|+.+++.|+++... ..+++++
T Consensus 36 ~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 115 (229)
T d2bzga1 36 HLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY 115 (229)
T ss_dssp HHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred HHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence 333555677889999999999999999999999999999999999999987542 1378999
Q ss_pred EeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHH
Q 043471 106 CADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSK 185 (485)
Q Consensus 106 ~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (485)
++|+..+. +...+.||+|+...+++|++.+.++.+++++.++|||||++++........ ....|.+..+.+.++.
T Consensus 116 ~~d~~~l~-~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~----~~~gpp~~~~~~el~~ 190 (229)
T d2bzga1 116 CCSIFDLP-RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPT----KHPGPPFYVPHAEIER 190 (229)
T ss_dssp ESCGGGGG-GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT----TCCCSSCCCCHHHHHH
T ss_pred Ecchhhcc-ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCC----CCCCCCCCCCHHHHHH
Confidence 99998742 345789999999999999988879999999999999999988876554322 1223445557888888
Q ss_pred Hhhh
Q 043471 186 VFKE 189 (485)
Q Consensus 186 ~~~~ 189 (485)
+|+.
T Consensus 191 lf~~ 194 (229)
T d2bzga1 191 LFGK 194 (229)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 8865
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.81 E-value=3.7e-20 Score=169.90 Aligned_cols=117 Identities=23% Similarity=0.360 Sum_probs=100.4
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~ 120 (485)
....+++.....++.+|||||||+|.++..|+++|.+|+|||+|++|++.|+++.... .+++++++|+++ ++++ ++
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~--l~~~-~~ 105 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLE--IAFK-NE 105 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGG--CCCC-SC
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhh--cccc-cc
Confidence 3455677777778889999999999999999999999999999999999999985432 379999999999 4444 68
Q ss_pred eeEEEhh-hhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 121 VDMMFSN-WLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 121 ~D~v~~~-~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
||+|+|. .+++|++.++..++|++++++|||||++++...+
T Consensus 106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 9999986 5788887777889999999999999999997654
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.81 E-value=5.4e-20 Score=169.99 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=117.9
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLT 115 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~ 115 (485)
....+.+++.+.+++|.+|||||||+|.++.+++++ |.+|+|+|+|+++++.|+++.... .++.+...|..++
T Consensus 38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--- 114 (280)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---
T ss_pred HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---
Confidence 345567889999999999999999999999999987 899999999999999999886443 3577777776652
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcc------------------ccCCCC-CC
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDS------------------KRKHNP-TH 176 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------------------~~~~~~-~~ 176 (485)
+++||.|++..+++|++++.++.+++++.++|||||.+++.+......... .+...| ..
T Consensus 115 --~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~ 192 (280)
T d2fk8a1 115 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR 192 (280)
T ss_dssp --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC
T ss_pred --ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCc
Confidence 479999999999999998778999999999999999999986543221100 001111 23
Q ss_pred CCChhHHHHHhhhcceecCC
Q 043471 177 YREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (485)
..+.+.+...++++||....
T Consensus 193 lPS~~~l~~~~e~aGf~v~~ 212 (280)
T d2fk8a1 193 LPSTEMMVEHGEKAGFTVPE 212 (280)
T ss_dssp CCCHHHHHHHHHHTTCBCCC
T ss_pred ccchHhhhhhHHhhccccce
Confidence 34667777888888885543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1.5e-19 Score=160.81 Aligned_cols=128 Identities=15% Similarity=0.216 Sum_probs=103.8
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
++.+|||||||+|.++..++ +++|+|+|++|++.|+++ ++.++++|+++ +++++++||+|+|+.+++|+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~--l~~~~~~fD~I~~~~~l~h~ 104 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR-----GVFVLKGTAEN--LPLKDESFDFALMVTTICFV 104 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT-----TCEEEECBTTB--CCSCTTCEEEEEEESCGGGS
T ss_pred CCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc-----ccccccccccc--cccccccccccccccccccc
Confidence 35689999999999988774 579999999999999984 68999999998 66788999999999999999
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC-------cc-ccCCCCCCCCChhHHHHHhhhcceec
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG-------DS-KRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
++ ..+++++++++|+|||.+++.++...... .. ........+.+.+.+.++++++||+.
T Consensus 105 ~d--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~ 171 (208)
T d1vlma_ 105 DD--PERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEE 171 (208)
T ss_dssp SC--HHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred cc--cccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeE
Confidence 88 66999999999999999999887643210 00 01112233457888999999999954
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.80 E-value=8.5e-20 Score=168.98 Aligned_cols=116 Identities=15% Similarity=0.168 Sum_probs=99.3
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
.+.+++.+.+.+|.+|||||||+|.++.+++++ |++|+|+++|+++++.++++... ...+.+...|.. +++
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-----~~~ 124 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-----EFD 124 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-----GCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-----ccc
Confidence 456789999999999999999999999999876 99999999999999999887543 236777777754 346
Q ss_pred CCeeEEEhhhhhhccCh-------HHHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 119 DSVDMMFSNWLLMYLSD-------KEVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
++||.|+|..+++|+++ ++++.+++++.++|||||.+++.+++..
T Consensus 125 ~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 125 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp CCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred cccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 89999999999999975 4578999999999999999999887643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.80 E-value=6.3e-20 Score=167.76 Aligned_cols=112 Identities=24% Similarity=0.255 Sum_probs=93.8
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCcc
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFD 351 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD 351 (485)
+.+++..... ++.+|||||||+|..+..++++ +.+|+|+|+|+.|++.|+++....+.+++++++|+.++++ +++||
T Consensus 27 ~~~~~~~~~~-~~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~-~~~fD 103 (246)
T d1y8ca_ 27 IIEKCVENNL-VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI-NRKFD 103 (246)
T ss_dssp HHHHHHTTTC-CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCC-SCCEE
T ss_pred HHHHHHHhCC-CCCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCccceeeccchhhhcc-ccccc
Confidence 3344444433 3569999999999999999988 7799999999999999999887666689999999999876 47899
Q ss_pred EEEEc-ccccccC---CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIYSR-DTILHIQ---DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~~~-~~~~~~~---~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+|+|. .+++|+. ++..+|++++++|||||.+++..
T Consensus 104 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 104 LITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp EEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 99986 6788875 56678999999999999999753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.79 E-value=1.7e-19 Score=162.32 Aligned_cols=135 Identities=15% Similarity=0.231 Sum_probs=108.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
.++.+|||||||+|.++..|+++|.+|+|+|+|+++++.|+++.. .+++++++++.+++ .+++||+|+|..+++|
T Consensus 19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~--~~~~~~~~~~~~~~---~~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK--DGITYIHSRFEDAQ---LPRRYDNIVLTHVLEH 93 (225)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC--SCEEEEESCGGGCC---CSSCEEEEEEESCGGG
T ss_pred CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc--cccccccccccccc---cccccccccccceeEe
Confidence 456789999999999999999999999999999999999998865 47999999998843 3579999999999999
Q ss_pred cChHHHHHHHHHHH-hhcccCcEEEEEeccCCCCC-------------ccc----cCCCCCCCCChhHHHHHhhhcceec
Q 043471 133 LSDKEVEKLAERMV-KWLKVGGYIFFRESCFHQSG-------------DSK----RKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 133 ~~~~~~~~~l~~~~-~~L~pgG~l~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
+++ ...+++++. ++|+|||.+++..++..... ... ......+..+.+.+++.++++||+.
T Consensus 94 ~~d--~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 94 IDD--PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp CSS--HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEE
T ss_pred cCC--HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEE
Confidence 998 558999998 79999999999876432110 000 0111223337888999999999854
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=1e-19 Score=167.99 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=101.6
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
.+.+++.+.+.+|.+|||||||+|..++++++. |++|+||++|++.++.|+++... .+++++..+|...+ +
T Consensus 51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~-----~ 125 (285)
T d1kpga_ 51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF-----D 125 (285)
T ss_dssp HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC-----C
T ss_pred HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc-----c
Confidence 357889999999999999999999999999886 89999999999999999987543 34789999998763 3
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
++||.|++..+++|+...+...+++++.++|||||.+++.+++.
T Consensus 126 ~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~ 169 (285)
T d1kpga_ 126 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 169 (285)
T ss_dssp CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence 78999999999999987668899999999999999999987763
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=1.8e-19 Score=164.68 Aligned_cols=109 Identities=23% Similarity=0.416 Sum_probs=94.3
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
..++... +.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++.. ..++.+|+.++++++++||+
T Consensus 33 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~~-----~~~~~~~~~~l~~~~~~fD~ 105 (246)
T d2avna1 33 GSFLEEY-LKNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----KNVVEAKAEDLPFPSGAFEA 105 (246)
T ss_dssp HHHHHHH-CCSCCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----SCEEECCTTSCCSCTTCEEE
T ss_pred HHHHHHh-cCCCCEEEEECCCCchhccccccc-ceEEEEeecccccccccccccc-----cccccccccccccccccccc
Confidence 3444443 446779999999999999999987 7899999999999999998753 24678999999999999999
Q ss_pred EEEc-ccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 353 IYSR-DTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 353 i~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
|+|. .+++|++|+.++|+++.|+|||||.++++.+.
T Consensus 106 ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 106 VLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp EEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred eeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 9985 68999999999999999999999999998653
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=1.4e-19 Score=165.97 Aligned_cols=114 Identities=28% Similarity=0.431 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCc
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSF 350 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~f 350 (485)
.+..+++.....++.+|||||||+|..+..++++ +.+|+|+|+|+.|++.|++++...+.++++.++|+.+++++ ++|
T Consensus 29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~-~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~-~~f 106 (251)
T d1wzna1 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFK-NEF 106 (251)
T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCC-SCE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc-ceEEEEEeeccccccccccccccccccchheehhhhhcccc-ccc
Confidence 4566777888888889999999999999999987 78999999999999999999876666899999999999876 689
Q ss_pred cEEEEc-cccccc--CCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 351 DVIYSR-DTILHI--QDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 351 D~i~~~-~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
|+|+|. .+++|+ +++.++|++++++|||||++++..
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999996 577777 357789999999999999999864
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.78 E-value=2.2e-18 Score=157.55 Aligned_cols=159 Identities=22% Similarity=0.236 Sum_probs=123.1
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~ 347 (485)
....+++.+.+.+..+|||||||+|.++..+++++ +.+++++|+ |.+++.+++++. +...++.++.+|+.+ +.+
T Consensus 69 ~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 69 AYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLP- 145 (256)
T ss_dssp TTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCS-
T ss_pred HHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-ccc-
Confidence 34567778888888899999999999999999987 679999997 888999988875 455789999999876 444
Q ss_pred CCccEEEEcccccccCCH--HHHHHHHHhcCCCCcEEEEEecccCCCC-CChhHHHHH-----HhcCCCCCCHHHHHHHH
Q 043471 348 NSFDVIYSRDTILHIQDK--PALFKSFFKWLKPGGTVLISDYCKSFGT-PSVEFSEYI-----KQRGYDLHDVKSYGQML 419 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~l 419 (485)
.+||+|++.+++|++++. .++|++++++|||||+++|.+....... ......... ...+...++.++|.+++
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll 225 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA 225 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH
Confidence 469999999999999754 5779999999999999999986543322 222222211 11233567899999999
Q ss_pred HhCCCeEEEEeec
Q 043471 420 KDAGFVDIIAEDR 432 (485)
Q Consensus 420 ~~aGf~~~~~~~~ 432 (485)
+++||+++++...
T Consensus 226 ~~AGf~~~~~~~~ 238 (256)
T d1qzza2 226 GSAGLALASERTS 238 (256)
T ss_dssp HTTTEEEEEEEEE
T ss_pred HHCCCceeEEEEe
Confidence 9999999988654
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=1.6e-18 Score=152.76 Aligned_cols=145 Identities=18% Similarity=0.266 Sum_probs=108.7
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEE
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
++..+...++.+|||||||+|..+..++++ +.+|+|+|+|+.|++.++++....+ .++.+...|+...++ +++||+|
T Consensus 22 ~~~~~~~~~~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I 99 (198)
T d2i6ga1 22 VLAAAKVVAPGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI 99 (198)
T ss_dssp HHHHHTTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred HHHHcccCCCCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence 344443334459999999999999999998 7899999999999999998876433 368999999998875 6889999
Q ss_pred EEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEe
Q 043471 354 YSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 354 ~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 430 (485)
++..+++|+++ ..+++++++++|+|||++++.........+.. . ......+..++.+.+ +||+++...
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~-----~--~~~~~~~~~el~~~~--~~~~i~~~~ 169 (198)
T d2i6ga1 100 LSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCT-----V--GFPFAFKEGELRRYY--EGWDMLKYN 169 (198)
T ss_dssp EEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC----------------CCCCBCTTHHHHHT--TTSEEEEEE
T ss_pred EEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCC-----C--CCCCccCHHHHHHHh--CCCeEEEee
Confidence 99999999964 56899999999999999999865443221110 0 111234455677766 689887654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.7e-20 Score=169.27 Aligned_cols=149 Identities=12% Similarity=-0.049 Sum_probs=109.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeE--------------------------
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVE-------------------------- 334 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~-------------------------- 334 (485)
..++.+|||||||+|..+..++.....+|+|+|+|+.|++.|++++......+.
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 346779999999999998878776444899999999999999998764332211
Q ss_pred -----EEE----ccCCCCCCCCCCccEEEEcccccccC----CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHH
Q 043471 335 -----FEV----ADCTKKTYPENSFDVIYSRDTILHIQ----DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEY 401 (485)
Q Consensus 335 -----~~~----~d~~~~~~~~~~fD~i~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 401 (485)
... .+....+++.++||+|++..+++|+. +...++++++++|||||.+++.++.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~----- 203 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVG----- 203 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET-----
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceec-----
Confidence 111 12222356788999999999999995 566799999999999999999977543211100
Q ss_pred HHhcCCCCCCHHHHHHHHHhCCCeEEEEeecch
Q 043471 402 IKQRGYDLHDVKSYGQMLKDAGFVDIIAEDRTE 434 (485)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 434 (485)
........++.++++++|++|||++++++....
T Consensus 204 ~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~ 236 (257)
T d2a14a1 204 KREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQ 236 (257)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTEEEEEEEEECC
T ss_pred cccccccCCCHHHHHHHHHHCCCEEEEEEEecc
Confidence 011123457899999999999999988865443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=7.3e-19 Score=155.15 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=117.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC-------------CCCeEEE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL-------------KCSVEFE 336 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~-------------~~~i~~~ 336 (485)
+.....+..+.++|+.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++.... ...+++.
T Consensus 7 ~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 34566788889999999999999999999999998 899999999999999999987532 2346788
Q ss_pred EccCCCCCC-CCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHH
Q 043471 337 VADCTKKTY-PENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVK 413 (485)
Q Consensus 337 ~~d~~~~~~-~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (485)
.+|+.+++. ...+||+|++..+++|++ +...+++++.++|||||++++............ .....+.+
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~---------p~~~~~~~ 156 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEG---------PPFSVPQT 156 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSS---------CCCCCCHH
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCC---------ccccCCHH
Confidence 888888753 346899999999999996 478899999999999999988765543322211 11234677
Q ss_pred HHHHHHHhCCCeEEEEee
Q 043471 414 SYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 414 ~~~~~l~~aGf~~~~~~~ 431 (485)
++.+++. .+|++..++.
T Consensus 157 el~~l~~-~~~~i~~~~~ 173 (201)
T d1pjza_ 157 WLHRVMS-GNWEVTKVGG 173 (201)
T ss_dssp HHHHTSC-SSEEEEEEEE
T ss_pred HHHHHhC-CCcEEEEEEE
Confidence 7777764 6787655543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.78 E-value=1.5e-19 Score=162.88 Aligned_cols=140 Identities=14% Similarity=0.225 Sum_probs=107.0
Q ss_pred CCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCCCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLTFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~D~v~ 125 (485)
+++.+|||||||+|..+..|++. +.+|+|+|+|++|++.|+++.... .++.+..+|+.+ . +.+.+|+|+
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~--~--~~~~~d~i~ 113 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH--V--EIKNASMVI 113 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT--C--CCCSEEEEE
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc--c--ccccceeeE
Confidence 45789999999999999999874 679999999999999999875432 367777777655 3 457899999
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc------------C-C-------------CCCCCCC
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR------------K-H-------------NPTHYRE 179 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------------~-~-------------~~~~~~~ 179 (485)
|+.+++|++.++..+++++++++|||||.+++.+........... . . ......+
T Consensus 114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 193 (225)
T d1im8a_ 114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS 193 (225)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence 999999998767889999999999999999998765433221100 0 0 0012235
Q ss_pred hhHHHHHhhhcceecCC
Q 043471 180 PRFYSKVFKECQIQDAS 196 (485)
Q Consensus 180 ~~~~~~~~~~~~~~~~~ 196 (485)
.+.+..+++++||+.++
T Consensus 194 ~~~~~~~L~~aGF~~v~ 210 (225)
T d1im8a_ 194 IETHKVRLKNVGFSQVE 210 (225)
T ss_dssp HHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHcCCCceE
Confidence 67788899999996554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.77 E-value=4.2e-18 Score=152.20 Aligned_cols=152 Identities=18% Similarity=0.165 Sum_probs=118.7
Q ss_pred HHHHHHHH---HcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-C
Q 043471 270 ETTKEFVA---KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-T 344 (485)
Q Consensus 270 ~~~~~~~~---~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~ 344 (485)
..+..++. .+.++||.+|||+|||+|..+..+++.. +..|+|+|+|+.|++.++++.... .++..+..|.... +
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-~ni~~i~~d~~~~~~ 136 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQE 136 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGG
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-cccceEEEeeccCcc
Confidence 34444444 4578999999999999999999999875 469999999999999999987654 4777788887664 3
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
+.+..+|++++...+++.++...+++++++.|||||.+++.............- . ..+++.+.|+++||
T Consensus 137 ~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~-~----------~~~e~~~~L~~aGF 205 (230)
T d1g8sa_ 137 YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK-E----------IFKEQKEILEAGGF 205 (230)
T ss_dssp GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH-H----------HHHHHHHHHHHHTE
T ss_pred cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHH-H----------HHHHHHHHHHHcCC
Confidence 456778888888888888899999999999999999999987655433222111 1 12567899999999
Q ss_pred eEEEEeecc
Q 043471 425 VDIIAEDRT 433 (485)
Q Consensus 425 ~~~~~~~~~ 433 (485)
++++..+..
T Consensus 206 ~ive~idL~ 214 (230)
T d1g8sa_ 206 KIVDEVDIE 214 (230)
T ss_dssp EEEEEEECT
T ss_pred EEEEEecCC
Confidence 998876653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.6e-19 Score=166.24 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=104.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCC-Ce---------------------------
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFE-NV--------------------------- 102 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~-~~--------------------------- 102 (485)
..++.+|||||||+|.++..++..+. +|+|+|+|+.|++.|+++....+ .+
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 34678999999999999988887754 79999999999999998754321 11
Q ss_pred ----EEEEeecc--CCCCCCCCCCeeEEEhhhhhhccCh--HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCC
Q 043471 103 ----KFMCADVT--SPDLTFSEDSVDMMFSNWLLMYLSD--KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNP 174 (485)
Q Consensus 103 ----~~~~~d~~--~~~~~~~~~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 174 (485)
.....++. ....+++.++||+|++.++++|++. +.+..+++++.++|||||++++.++..............
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~~ 208 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS 208 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceecccccc
Confidence 11111221 1223567889999999999999963 347899999999999999999987754332222222223
Q ss_pred CCCCChhHHHHHhhhcceec
Q 043471 175 THYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~ 194 (485)
.++.+.+.+++.|+++||..
T Consensus 209 ~~~~~~~~~~~~l~~aGf~v 228 (257)
T d2a14a1 209 CVALEKGEVEQAVLDAGFDI 228 (257)
T ss_dssp CCCCCHHHHHHHHHHTTEEE
T ss_pred ccCCCHHHHHHHHHHCCCEE
Confidence 44558899999999999964
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.76 E-value=2e-18 Score=158.05 Aligned_cols=152 Identities=23% Similarity=0.262 Sum_probs=112.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC--CCeEEEEccCCCCCC-CCCCccEEEEcc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK--CSVEFEVADCTKKTY-PENSFDVIYSRD 357 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~~~~d~~~~~~-~~~~fD~i~~~~ 357 (485)
.+++.+|||+|||+|..+..+++....+|+|+|+|+.|++.|+++....+ .++.+.++|+...++ .+++||+|+|..
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~ 101 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 101 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence 56788999999999999999988744589999999999999999876443 468899999987765 467899999999
Q ss_pred cccccC----CHHHHHHHHHhcCCCCcEEEEEecccCC-----------------------CCCChhHHHH---HHhc--
Q 043471 358 TILHIQ----DKPALFKSFFKWLKPGGTVLISDYCKSF-----------------------GTPSVEFSEY---IKQR-- 405 (485)
Q Consensus 358 ~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~-----------------------~~~~~~~~~~---~~~~-- 405 (485)
++||+. +...+++++.++|||||+++++.+.... ..+......+ ....
T Consensus 102 ~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 181 (252)
T d1ri5a_ 102 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVN 181 (252)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCS
T ss_pred eeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhcccCCceEEEecccccCCcCcCceEEEEEcccccc
Confidence 999983 3457899999999999999987543100 0000000000 0000
Q ss_pred --CCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 406 --GYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 406 --~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
...+.+.+.+.++++++||+.+.....
T Consensus 182 ~~~E~l~~~~~l~~~~~~~g~~lv~~~~f 210 (252)
T d1ri5a_ 182 NCIEYFVDFTRMVDGFKRLGLSLVERKGF 210 (252)
T ss_dssp SEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEecH
Confidence 001345788999999999999887654
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.76 E-value=6.5e-19 Score=160.93 Aligned_cols=105 Identities=18% Similarity=0.302 Sum_probs=89.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEEEhh-hhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMMFSN-WLL 130 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v~~~-~~~ 130 (485)
.++.+|||||||+|.++..|+++|.+|+|+|+|++|++.|+++.... .+++++++|+.+++ + +++||+|+|. .++
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~--~-~~~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN--I-NRKFDLITCCLDST 112 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC--C-SCCEEEEEECTTGG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhc--c-cccccccceeeeee
Confidence 44679999999999999999999999999999999999999875432 38999999999854 2 4689999975 578
Q ss_pred hccC-hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 131 MYLS-DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 131 ~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+. .+.+.++++++++.|+|||.+++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred eccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 8874 45588999999999999999998543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.1e-17 Score=150.61 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=115.7
Q ss_pred HHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC------------------CCCCeE
Q 043471 273 KEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG------------------LKCSVE 334 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~------------------~~~~i~ 334 (485)
+.+.+.+...++.+|||+|||+|..+..|+++ |.+|+|+|+|+.+++.|+++... ...+++
T Consensus 35 ~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 35 KHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 34445567788999999999999999999987 89999999999999999987542 234788
Q ss_pred EEEccCCCCC-CCCCCccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCC
Q 043471 335 FEVADCTKKT-YPENSFDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHD 411 (485)
Q Consensus 335 ~~~~d~~~~~-~~~~~fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (485)
+.++|+.+++ ...+.||+|+...+++|++ +.+.+++++.++|||||++++........... .+....+
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~---------gpp~~~~ 184 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP---------GPPFYVP 184 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC---------CSSCCCC
T ss_pred EEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC---------CCCCCCC
Confidence 9999988764 4568899999999999994 67889999999999999998887655332211 0112357
Q ss_pred HHHHHHHHHhCCCeEEEEe
Q 043471 412 VKSYGQMLKDAGFVDIIAE 430 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~~ 430 (485)
.+++.+++.. +|.+..++
T Consensus 185 ~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 185 HAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHhcC-CCEEEEEE
Confidence 8899999965 68765544
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.75 E-value=1.8e-18 Score=158.37 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=90.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
..++.+|||||||+|..+..+++.+. +|+|||+|++|++.|+++... ..++.|+++|+...++. ..++||+|+|.
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-~~~~fD~V~~~ 100 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-LGKEFDVISSQ 100 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-CSSCEEEEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-ccccceEEEEc
Confidence 44678999999999999999998865 799999999999999987532 23799999999763221 36789999999
Q ss_pred hhhhccC--hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 128 WLLMYLS--DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 128 ~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++||+. ......+++++.++|+|||+++++.+.
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 9999973 344779999999999999999987553
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.75 E-value=2.4e-18 Score=159.84 Aligned_cols=116 Identities=16% Similarity=0.295 Sum_probs=97.4
Q ss_pred hhhHHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCC
Q 043471 41 EERPEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLT 115 (485)
Q Consensus 41 ~~~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~ 115 (485)
.....+++.+ ...++.+|||||||+|..+..|++. +.+|+|+|+|+.+++.|+++....+ +++|+++|+.+ ++
T Consensus 13 d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~--~~ 90 (281)
T d2gh1a1 13 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE--IE 90 (281)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTT--CC
T ss_pred HHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccc--cc
Confidence 3344555554 4567889999999999999999985 5789999999999999999865444 79999999988 44
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
++ ++||+|+|+.+++|+++ ...++++++++|||||.+++.++.
T Consensus 91 ~~-~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 91 LN-DKYDIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CS-SCEEEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cc-CCceEEEEehhhhcCCC--HHHHHHHHHHHcCcCcEEEEEECC
Confidence 44 57999999999999998 568999999999999999998764
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3e-18 Score=157.66 Aligned_cols=145 Identities=12% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCC-C---------------------------
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFE-N--------------------------- 101 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~--------------------------- 101 (485)
...+|.+|||||||+|.++...+.. +.+|+|+|+|+.|++.+++.....+ .
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 3456889999999999888665544 6689999999999999998764322 1
Q ss_pred ----eEEEEeeccCCC----CCCCCCCeeEEEhhhhhhccCh--HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC
Q 043471 102 ----VKFMCADVTSPD----LTFSEDSVDMMFSNWLLMYLSD--KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK 171 (485)
Q Consensus 102 ----~~~~~~d~~~~~----~~~~~~~~D~v~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 171 (485)
.....+|+.... .+.+.++||+|++.++++|+.. +++.++++++.++|||||++++.+............
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~~ 210 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEA 210 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCCc
Confidence 134455665421 2344678999999999999962 348899999999999999999987654322222222
Q ss_pred CCCCCCCChhHHHHHhhhcceecC
Q 043471 172 HNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
....++.+.+.+++.++++||...
T Consensus 211 ~~~~~~~t~e~v~~~l~~aGf~v~ 234 (263)
T d2g72a1 211 RLTVVPVSEEEVREALVRSGYKVR 234 (263)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred ccccCCCCHHHHHHHHHHCCCeEE
Confidence 234455689999999999999543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.73 E-value=2.3e-18 Score=157.56 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=117.2
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
.....+.+++.++..+..+|||||||+|..+..++++ +.+++++|+ +++++.++++... ..+++++.+|+.+.
T Consensus 65 ~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~- 142 (253)
T d1tw3a2 65 QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP- 142 (253)
T ss_dssp TTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-
T ss_pred HHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-
Confidence 3445567788888778889999999999999999998 458999998 6788888876532 35899999998652
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC----------CCCCCCCChhHH
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK----------HNPTHYREPRFY 183 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 183 (485)
. .++||+|+++.++||+++++..++|++++++|||||.+++.+............ ...-..++.+.|
T Consensus 143 ~---~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~ 219 (253)
T d1tw3a2 143 L---PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKW 219 (253)
T ss_dssp C---SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHH
T ss_pred c---ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHH
Confidence 2 257999999999999998878899999999999999999987654322111100 001122467889
Q ss_pred HHHhhhcceecCC
Q 043471 184 SKVFKECQIQDAS 196 (485)
Q Consensus 184 ~~~~~~~~~~~~~ 196 (485)
+.+++++||+...
T Consensus 220 ~~ll~~AGf~~~~ 232 (253)
T d1tw3a2 220 DGLAASAGLVVEE 232 (253)
T ss_dssp HHHHHHTTEEEEE
T ss_pred HHHHHHCCCeEEE
Confidence 9999999996543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=5.8e-18 Score=153.21 Aligned_cols=126 Identities=23% Similarity=0.294 Sum_probs=103.4
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.+++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...+.++.+.++|+.+ .++.++||+|+++...+
T Consensus 118 ~~~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 118 LRPGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred cCccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc-cccccccchhhhccccc
Confidence 568899999999999999988765 7899999999999999999987666677888888765 34568999999975443
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
....+++++.++|||||+++++.... ...+.+.+.++++||++++...
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~--------------------~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILK--------------------DRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG--------------------GGHHHHHHHHHHTTCEEEEEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecch--------------------hhHHHHHHHHHHCCCEEEEEEE
Confidence 35678899999999999999985421 1246788999999999887654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.8e-17 Score=154.29 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=110.2
Q ss_pred HHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-------CCEEEEEeCCHHHHHHHHHHhcCCC--CCeEE--EEccCC
Q 043471 274 EFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-------DVHVVGIDLSINMISFALERAIGLK--CSVEF--EVADCT 341 (485)
Q Consensus 274 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~v~g~D~s~~~~~~a~~~~~~~~--~~i~~--~~~d~~ 341 (485)
.++..+. .++..+|||||||+|.++..+++.+ +..++|+|+|+.|++.|++++.... .++.+ ...++.
T Consensus 30 ~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 109 (280)
T d1jqea_ 30 GIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSS 109 (280)
T ss_dssp HHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHH
T ss_pred HHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhh
Confidence 3444442 3455689999999999988776542 3478999999999999999986433 23333 333322
Q ss_pred ------CCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHh----cCCCCCC
Q 043471 342 ------KKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQ----RGYDLHD 411 (485)
Q Consensus 342 ------~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 411 (485)
..+.++++||+|++.++++|++|+..++++++++|+|||.+++..+...... ...+..+... ....+.+
T Consensus 110 ~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~ 188 (280)
T d1jqea_ 110 EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW-DKLWKKYGSRFPQDDLCQYIT 188 (280)
T ss_dssp HHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHH-HHHHHHHGGGSCCCTTSCCCC
T ss_pred hhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcchH-HHHHHHHHHhcCCCcccccCC
Confidence 2245678999999999999999999999999999999999999865432211 1112222221 1234577
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 043471 412 VKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 412 ~~~~~~~l~~aGf~~~~~ 429 (485)
..++.++|++.||.....
T Consensus 189 ~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 189 SDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 899999999999986543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=2e-17 Score=152.34 Aligned_cols=99 Identities=27% Similarity=0.363 Sum_probs=88.4
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
...++.+|||||||+|.++..+++.. +.+++|+|+|+.|++.|+++.. ++.+.++|+.++|+++++||+|++..+
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~ 156 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP----QVTFCVASSHRLPFSDTSMDAIIRIYA 156 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT----TSEEEECCTTSCSBCTTCEEEEEEESC
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc----cccceeeehhhccCCCCCEEEEeecCC
Confidence 34566799999999999999999886 6799999999999999998754 789999999999999999999999988
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
++| +++++|+|||||+++++.+..
T Consensus 157 ~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 157 PCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred HHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 876 478999999999999997654
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=9.1e-19 Score=157.72 Aligned_cols=112 Identities=20% Similarity=0.174 Sum_probs=92.9
Q ss_pred HHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD 351 (485)
.+.+.+ ..+|.+|||||||+|..+..+++..+.+++|||+|+.+++.|+++......++.+...++... ++++++||
T Consensus 45 ~la~~~-~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD 123 (229)
T d1zx0a1 45 ALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFD 123 (229)
T ss_dssp HHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEE
T ss_pred HHHHhh-ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 333433 467889999999999999999987556899999999999999999887766777777765432 56678899
Q ss_pred EEE-----EcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIY-----SRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~-----~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.|+ +...++|+.++..++++++|+|||||+|++.+
T Consensus 124 ~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 124 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 887 46778888899999999999999999998754
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.7e-18 Score=154.60 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=106.5
Q ss_pred HHHHHHhhhcCcCcchhhhhcCCCc----CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCC
Q 043471 11 EIQKNYWMEHSANLTVEAMMLDSKA----SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFI 85 (485)
Q Consensus 11 ~~~~~yw~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s 85 (485)
|+-+.+|+..+..|........... ..|..+....+.+.+. .+|.+|||||||+|..+..+++. +.+|+|||+|
T Consensus 7 e~~~~~w~~~~~~yd~~~~~l~~~~~~~m~~w~~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s 85 (229)
T d1zx0a1 7 ENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN 85 (229)
T ss_dssp CBCHHHHTTSCEEECTTSCEEEETTEEEEEGGGHHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECC
T ss_pred ccchhhhhhhhhcCCcHHHHHHHhchHHHHHHHHHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCC
Confidence 3446779987777653321111111 1233444444544444 56889999999999999999987 4689999999
Q ss_pred hHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCCeeEEE-----hhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 86 DSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDSVDMMF-----SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 86 ~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~D~v~-----~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+.+++.|+++..... ++.++.+++.....++++++||.|+ +...++|+.+ ...++++++|+|||||++++.
T Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 86 DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEEC
T ss_pred HHHHHHHHHHhhhcccccccccccccccccccccccccceeecccccccccccccC--HHHHHHHHHHHcCCCcEEEEE
Confidence 999999999875433 6788888876644556788999887 4667788877 669999999999999999874
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.71 E-value=4.9e-18 Score=147.68 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=99.4
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDL 114 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~ 114 (485)
-..+.+..++..+.+.++.+|||||||+|.+++.+++.+.+|+|+|+++++++.|+++... .++++++++|+.+ .
T Consensus 17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~--~ 94 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--A 94 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--H
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh--c
Confidence 4557778899999999999999999999999999999989999999999999999987532 3589999999887 4
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..+.+.||+|++....++. ..+++.+.+.|||||++++...
T Consensus 95 ~~~~~~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 95 LCKIPDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp HTTSCCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccCCcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEee
Confidence 4567899999998755443 4689999999999999998654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=5.9e-17 Score=142.64 Aligned_cols=110 Identities=18% Similarity=0.121 Sum_probs=90.4
Q ss_pred HcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEE-
Q 043471 278 KLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYS- 355 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~- 355 (485)
.+.++||++|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++....+ ++.++..|....+.....+|.|.+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~-ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN-NIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS-SEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC-CceEEEeeccCccccccccceEEEE
Confidence 4678999999999999999999999876 3599999999999999998876544 899999998876544444444432
Q ss_pred cccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 356 RDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
...+.|..+...++++++++|||||++++....
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 345667778899999999999999999998654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.2e-17 Score=152.52 Aligned_cols=150 Identities=12% Similarity=0.122 Sum_probs=104.8
Q ss_pred hhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh--------cCcEEEEeCChHHHHHHHHHcCCCCC---eE--EEE
Q 043471 41 EERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK--------AGHVIALDFIDSVIKKNEEVNGHFEN---VK--FMC 106 (485)
Q Consensus 41 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--------~~~v~giD~s~~~~~~a~~~~~~~~~---~~--~~~ 106 (485)
+....++..+.. ++..+|||||||+|.++..+++. +.+++|+|+|+.|++.|+++....++ +. +..
T Consensus 26 ~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~ 105 (280)
T d1jqea_ 26 KKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHK 105 (280)
T ss_dssp HTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEEC
T ss_pred HHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchh
Confidence 444556666654 34458999999999998877654 23689999999999999998765433 33 333
Q ss_pred eeccCC----CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCC--------ccccCCCC
Q 043471 107 ADVTSP----DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSG--------DSKRKHNP 174 (485)
Q Consensus 107 ~d~~~~----~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--------~~~~~~~~ 174 (485)
.+++.. ..+.++++||+|+|..+++|+++ ...++++++++|+|||.+++......... ........
T Consensus 106 ~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d--~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (280)
T d1jqea_ 106 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDL 183 (280)
T ss_dssp SCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSCCCTT
T ss_pred hhhhhhcchhcccCCCCceeEEEEccceecCCC--HHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHHHHhcCCCcc
Confidence 333211 13456889999999999999998 66999999999999999999765432110 00011122
Q ss_pred CCCCChhHHHHHhhhcce
Q 043471 175 THYREPRFYSKVFKECQI 192 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (485)
..+...+.+.+++.+.|+
T Consensus 184 ~~~~~~~~~~~~L~~~G~ 201 (280)
T d1jqea_ 184 CQYITSDDLTQMLDNLGL 201 (280)
T ss_dssp SCCCCHHHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHCCC
Confidence 233466778889998887
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.70 E-value=4.7e-17 Score=141.39 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=111.1
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT 344 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~ 344 (485)
...+....++..+.+.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|++++. ++..+++++++|+.+.+
T Consensus 17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~ 95 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence 33456677888899999999999999999999999987 5699999999999999999986 44468999999998877
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCC
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGF 424 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 424 (485)
.+...||.|++....+ +...+++.+.+.|||||++++..... .+.....+.+++.||
T Consensus 96 ~~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~--------------------e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL--------------------ETKFEAMECLRDLGF 152 (186)
T ss_dssp TTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH--------------------HHHHHHHHHHHHTTC
T ss_pred cccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeecc--------------------ccHHHHHHHHHHcCC
Confidence 7778999999987654 46789999999999999998874321 113445677788887
Q ss_pred eE
Q 043471 425 VD 426 (485)
Q Consensus 425 ~~ 426 (485)
..
T Consensus 153 ~~ 154 (186)
T d1l3ia_ 153 DV 154 (186)
T ss_dssp CC
T ss_pred Ce
Confidence 43
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=2.2e-17 Score=152.11 Aligned_cols=98 Identities=24% Similarity=0.344 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
...++.+|||||||+|.++..|++. +.+|+|+|+|+.|++.|+++. ++++++++|+.+ +++++++||+|++..
T Consensus 81 ~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~--l~~~~~sfD~v~~~~ 155 (268)
T d1p91a_ 81 LDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHR--LPFSDTSMDAIIRIY 155 (268)
T ss_dssp SCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTS--CSBCTTCEEEEEEES
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhh--ccCCCCCEEEEeecC
Confidence 3456789999999999999999988 458999999999999999875 589999999998 778899999999988
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
+++| ++++.|+|||||++++..+..
T Consensus 156 ~~~~---------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 156 APCK---------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp CCCC---------HHHHHHHEEEEEEEEEEEECT
T ss_pred CHHH---------HHHHHHHhCCCcEEEEEeeCC
Confidence 7766 457999999999999987754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=7.9e-18 Score=157.57 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=91.9
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC------CeEEEEeeccCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE------NVKFMCADVTSPD 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~~d~~~~~ 113 (485)
...+..+++.+....+.+|||||||+|.++..|+++|.+|+|+|+|++|++.|+++..... ...+..+++...+
T Consensus 42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T d1xvaa_ 42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 121 (292)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccc
Confidence 3445566666666777899999999999999999999999999999999999988643211 2344555543321
Q ss_pred CC-CCCCCeeEEEhh-hhhhccCh-----HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 114 LT-FSEDSVDMMFSN-WLLMYLSD-----KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 114 ~~-~~~~~~D~v~~~-~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.. .+.++||+|+|. .+++|+++ .+...++++++++|||||++++...+
T Consensus 122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 11 135689999875 47888864 34778999999999999999996543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=2.8e-17 Score=151.05 Aligned_cols=147 Identities=12% Similarity=-0.007 Sum_probs=106.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCe---------------------------
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSV--------------------------- 333 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i--------------------------- 333 (485)
...|.+|||+|||+|..+...+.+...+|+|+|+|+.|++.+++++......+
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 44678999999999988766555545699999999999999998875322111
Q ss_pred ----EEEEccCCCC------CCCCCCccEEEEcccccccC----CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHH
Q 043471 334 ----EFEVADCTKK------TYPENSFDVIYSRDTILHIQ----DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFS 399 (485)
Q Consensus 334 ----~~~~~d~~~~------~~~~~~fD~i~~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 399 (485)
.....|+... +.+.++||+|++..+++|+. +...++++++++|||||.+++.+...........
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~-- 209 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE-- 209 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT--
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCC--
Confidence 2233455332 23456899999999999994 4678899999999999999998765432111000
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeec
Q 043471 400 EYIKQRGYDLHDVKSYGQMLKDAGFVDIIAEDR 432 (485)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 432 (485)
........+.+++.++|+++||++++.+..
T Consensus 210 ---~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~ 239 (263)
T d2g72a1 210 ---ARLTVVPVSEEEVREALVRSGYKVRDLRTY 239 (263)
T ss_dssp ---EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---cccccCCCCHHHHHHHHHHCCCeEEEEEEe
Confidence 001123468999999999999999877643
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=5.2e-17 Score=145.02 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=108.5
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
++.++.++|.+|||+|||+|..+..|++.+ ..|+|+|+|+.|++.++++....+++..+.+|..... ++.+..+|++
T Consensus 67 l~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~-~~~~~~~~v~ 145 (230)
T d1g8sa_ 67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQ-EYANIVEKVD 145 (230)
T ss_dssp CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGG-GGTTTCCCEE
T ss_pred HHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCc-ccccccceeE
Confidence 356678899999999999999999999874 5899999999999999999877789999999988753 3456778887
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceecCC
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQDAS 196 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (485)
++...++|..+ .+.++.++.+.|||||++++......... . .......+...+.++++||...+
T Consensus 146 ~i~~~~~~~~~--~~~~l~~~~r~LKpgG~~~i~~k~~~~d~-----~-~~~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 146 VIYEDVAQPNQ--AEILIKNAKWFLKKGGYGMIAIKARSIDV-----T-KDPKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp EEEECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGGGTCS-----S-SCHHHHHHHHHHHHHHHTEEEEE
T ss_pred EeeccccchHH--HHHHHHHHHHhcccCceEEEEeeccccCC-----C-CCHHHHHHHHHHHHHHcCCEEEE
Confidence 77777788877 66899999999999999999754322111 0 00011234566778889996443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=1.5e-16 Score=139.10 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKKTYPE 347 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~~~~~ 347 (485)
..+-+++.+...++.+|||+|||+|.++..+++. +.+|+++|+|+.+++.|++++. ++. .++++..+|..+ ++++
T Consensus 40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~ 117 (194)
T d1dusa_ 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc
Confidence 3456788888899999999999999999999987 5799999999999999999876 332 368999999877 5677
Q ss_pred CCccEEEEcccccccCC-HHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHIQD-KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++||+|+++.++++..+ ...+++++.++|||||.+++..
T Consensus 118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 89999999998877655 4678999999999999998763
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.67 E-value=1e-16 Score=144.13 Aligned_cols=133 Identities=15% Similarity=0.214 Sum_probs=104.7
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
+..++..+.++||++|||+|||+|.++..+++.. +.+|+++|+++++++.|++++... ..++++..+|+.+. +++
T Consensus 74 ~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~-~~~ 152 (250)
T d1yb2a1 74 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISD 152 (250)
T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCS
T ss_pred HHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-ccc
Confidence 4567888999999999999999999999999865 469999999999999999998743 46899999999876 467
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
++||.|++ +++++..+++++.++|||||++++..++. . ..+...+.|+++||..+
T Consensus 153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i---------~-----------Qv~~~~~~l~~~gf~~i 207 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF---------D-----------QSEKTVLSLSASGMHHL 207 (250)
T ss_dssp CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH---------H-----------HHHHHHHHSGGGTEEEE
T ss_pred ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCCc---------C-----------hHHHHHHHHHHCCCcee
Confidence 89999986 57889999999999999999998864321 0 12345677788999876
Q ss_pred EEe
Q 043471 428 IAE 430 (485)
Q Consensus 428 ~~~ 430 (485)
+..
T Consensus 208 ~~~ 210 (250)
T d1yb2a1 208 ETV 210 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 553
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=9.7e-17 Score=140.41 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=93.9
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--C--CCCeEEEEeeccCCCCCCCC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--H--FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~--~~~~~~~~~d~~~~~~~~~~ 118 (485)
.+.+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++.. . ..+++++.+|+.+ ++++
T Consensus 41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~---~~~~ 117 (194)
T d1dusa_ 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKD 117 (194)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTT
T ss_pred HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh---hhcc
Confidence 3567888888899999999999999999999999999999999999999998643 1 2368999999865 2357
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++||+|+++.++++.. +....+++++.++|+|||.+++.
T Consensus 118 ~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 156 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVV 156 (194)
T ss_dssp SCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCceEEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEE
Confidence 8999999987765543 33578999999999999998874
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=1.8e-16 Score=143.27 Aligned_cols=113 Identities=17% Similarity=0.245 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc----CCCCCeEEEEccCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI----GLKCSVEFEVADCTKK 343 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~----~~~~~i~~~~~d~~~~ 343 (485)
.-+..++..+.++||++|||+|||+|.++..|++.. +.+|+++|+++++++.|++++. ....++.+.++|+.+.
T Consensus 83 kD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~ 162 (264)
T d1i9ga_ 83 KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 162 (264)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc
Confidence 456788999999999999999999999999999876 4699999999999999999875 2346899999999998
Q ss_pred CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 344 TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++++++||.|++ +++++..++.++.++|||||++++..+
T Consensus 163 ~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 163 ELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred cccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 888999999975 689999999999999999999988754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.66 E-value=1.7e-16 Score=144.85 Aligned_cols=154 Identities=14% Similarity=0.149 Sum_probs=115.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSP 112 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~ 112 (485)
.+......+++.++.....+|||||||+|.++..++++ +.+++++|+ +++++.++++.. ..+++.++.+|..+.
T Consensus 65 ~~~~~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~ 143 (256)
T d1qzza2 65 DEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP 143 (256)
T ss_dssp GSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred hHHHHHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc
Confidence 34455667788877777789999999999999999998 568999997 778888887643 235799999997652
Q ss_pred CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc---C--------CCCCCCCChh
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR---K--------HNPTHYREPR 181 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~---~--------~~~~~~~~~~ 181 (485)
+ + .+||+|++..++|+++++...++|++++++|||||.++|.+........... . ..+-..++.+
T Consensus 144 -~--p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~ 219 (256)
T d1qzza2 144 -L--P-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRD 219 (256)
T ss_dssp -C--S-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHH
T ss_pred -c--c-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHH
Confidence 2 2 4699999999999999888889999999999999999998765322211110 0 0112234678
Q ss_pred HHHHHhhhcceecCC
Q 043471 182 FYSKVFKECQIQDAS 196 (485)
Q Consensus 182 ~~~~~~~~~~~~~~~ 196 (485)
.|+++++++||+...
T Consensus 220 e~~~ll~~AGf~~~~ 234 (256)
T d1qzza2 220 EVVDLAGSAGLALAS 234 (256)
T ss_dssp HHHHHHHTTTEEEEE
T ss_pred HHHHHHHHCCCceeE
Confidence 899999999996543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=2.2e-16 Score=139.73 Aligned_cols=112 Identities=23% Similarity=0.304 Sum_probs=96.9
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY 345 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~ 345 (485)
+.....+++.+.+++|++|||||||+|.++..+++.+ ..+|+++|+++.+++.|++++.... .++.++++|..+.++
T Consensus 61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~ 140 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP 140 (213)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG
T ss_pred chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc
Confidence 3567789999999999999999999999999999876 3589999999999999999987443 578889999988776
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.+++||+|++..++++++ .++.+.|||||++++..
T Consensus 141 ~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 141 EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred cccchhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence 778999999999999886 35678899999998853
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=1e-16 Score=144.94 Aligned_cols=128 Identities=17% Similarity=0.218 Sum_probs=98.9
Q ss_pred HHHhccCC--CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCC-CeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFE-NVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~~d~~~~~~~~~~~~ 120 (485)
+.+++.+. .++|.+|||+|||+|.+++.+++.|.+|+|+|+|+.|++.|+++....+ +++++++|+.+. ++.++
T Consensus 108 ~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~---~~~~~ 184 (254)
T d2nxca1 108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA---LPFGP 184 (254)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH---GGGCC
T ss_pred hHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEecccccc---ccccc
Confidence 34444442 4578899999999999999999999999999999999999998653222 678899988652 35689
Q ss_pred eeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcceec
Q 043471 121 VDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQD 194 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (485)
||+|+++...+ ...++++++.++|||||+++++.... .+.+.+.+.+++.||..
T Consensus 185 fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~---------------~~~~~v~~~~~~~Gf~~ 238 (254)
T d2nxca1 185 FDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILK---------------DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp EEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEG---------------GGHHHHHHHHHHTTCEE
T ss_pred cchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecch---------------hhHHHHHHHHHHCCCEE
Confidence 99999874332 25578899999999999999976532 13466778888888754
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.64 E-value=8.2e-16 Score=140.02 Aligned_cols=136 Identities=20% Similarity=0.277 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~~~ 345 (485)
..+..++..+.++||++|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++.. +..++.+...|+.. .+
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~-~~ 168 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE-GF 168 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG-CC
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc-cc
Confidence 456778999999999999999999999999999876 46999999999999999999874 34578888888654 34
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFV 425 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 425 (485)
....||.|+ .+++++..+++++.++|||||++++..++. ...+...+.|+++||.
T Consensus 169 ~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~--------------------~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 169 DEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTT--------------------NQVQETLKKLQELPFI 223 (266)
T ss_dssp SCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSH--------------------HHHHHHHHHHHHSSEE
T ss_pred cccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcc--------------------cHHHHHHHHHHHCCce
Confidence 567788875 478999999999999999999999874321 0134567888899998
Q ss_pred EEEEee
Q 043471 426 DIIAED 431 (485)
Q Consensus 426 ~~~~~~ 431 (485)
.+++.+
T Consensus 224 ~i~~~E 229 (266)
T d1o54a_ 224 RIEVWE 229 (266)
T ss_dssp EEEEEC
T ss_pred eEEEEE
Confidence 877643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=4.3e-16 Score=137.78 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=92.4
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDL 114 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~ 114 (485)
+.....+++.+..++|.+|||||||+|..+..|++. ...|+++|+++++++.|+++.. ...++.++++|... .
T Consensus 61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~--~ 138 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY--G 138 (213)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--C
T ss_pred chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHH--c
Confidence 344567889999999999999999999999999986 3479999999999999999754 34589999999877 4
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+.+++||+|++..+++++++ ++.+.|||||.+++.
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred cccccchhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 456789999999999999875 356789999999884
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=1.8e-16 Score=148.21 Aligned_cols=111 Identities=23% Similarity=0.415 Sum_probs=85.2
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCC-----CeEEEEccCCC----CCC
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKC-----SVEFEVADCTK----KTY 345 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~-----~i~~~~~d~~~----~~~ 345 (485)
+++.+..+++.+|||+|||+|.++..|+++ |.+|+|+|+|+.|++.|+++...... ...+...++.. .|
T Consensus 48 l~~~l~~~~~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 125 (292)
T d1xvaa_ 48 LLGLLRQHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP- 125 (292)
T ss_dssp HHHHHHHTTCCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-
T ss_pred HHHHhhhcCCCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-
Confidence 344444456779999999999999999988 78999999999999999988653322 23344444432 23
Q ss_pred CCCCccEEEEc-ccccccCC-------HHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSR-DTILHIQD-------KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~-~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+.++||+|+|. .+++|+++ ...+|++++++|||||+|++...
T Consensus 126 ~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 126 AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 34789999985 58999854 55799999999999999999753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.61 E-value=1.1e-15 Score=135.13 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=94.0
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
+.....+++.+...++.+|||||||+|+.+..|++.+.+|+++|+++++++.|+++.....|+.++.+|...- ....+
T Consensus 56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g--~~~~~ 133 (224)
T d1vbfa_ 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLG--YEEEK 133 (224)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGC--CGGGC
T ss_pred hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhc--chhhh
Confidence 3444568899999999999999999999999999999999999999999999999887778999999998652 22457
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+||+|++..++.++++ .+.+.|+|||++++-
T Consensus 134 pfD~Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 8999999988888875 256789999999883
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.61 E-value=5.5e-16 Score=136.33 Aligned_cols=108 Identities=20% Similarity=0.202 Sum_probs=86.8
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-CCCCCeeEEE
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-FSEDSVDMMF 125 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~D~v~ 125 (485)
.++.++|.+|||+|||+|..+.++++. ..+|+|+|+|+.|++.|+++....+|+.++.+|+..++.. .....+|+|+
T Consensus 51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 477889999999999999999999986 2489999999999999998876667999999999875432 1123455554
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ .+.|..+ ...++++++++|||||++++...
T Consensus 131 ~--~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 131 Q--DIAQKNQ--IEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp E--CCCSTTH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred e--cccChhh--HHHHHHHHHHHhccCCeEEEEEE
Confidence 4 3566666 56899999999999999999754
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.5e-16 Score=144.83 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=100.3
Q ss_pred CchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC----------CCCCeEE
Q 043471 267 GGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG----------LKCSVEF 335 (485)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~----------~~~~i~~ 335 (485)
.....+..+++.+.++++.+|||+|||+|.++..+++..++ +++|+|+|+.+++.|+++... ...++++
T Consensus 135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~ 214 (328)
T d1nw3a_ 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214 (328)
T ss_dssp CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence 44577889999999999999999999999999999987765 799999999999999876541 2357999
Q ss_pred EEccCCCCCCCCCCc--cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 336 EVADCTKKTYPENSF--DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 336 ~~~d~~~~~~~~~~f--D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+++|+.+.++.+..+ |+|++ +.+.|.++....++++.++|||||++++...
T Consensus 215 ~~gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 215 ERGDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp EECCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EECcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 999999887765555 55665 4566778899999999999999999988754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1.2e-15 Score=137.82 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=100.2
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcC-----CCCCeEEEEe
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNG-----HFENVKFMCA 107 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~-----~~~~~~~~~~ 107 (485)
-...+.....++..+...+|++|||+|||+|.++..|++. + .+|+++|+++++++.|+++.. ...++.+.++
T Consensus 78 qiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~ 157 (264)
T d1i9ga_ 78 QVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157 (264)
T ss_dssp CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS
T ss_pred cccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec
Confidence 3355667778999999999999999999999999999987 3 589999999999999998543 2368999999
Q ss_pred eccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 108 DVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 108 d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
|+.+ .++++++||.|++ +++++ ..++.++.++|||||.+++..++.
T Consensus 158 d~~~--~~~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 158 DLAD--SELPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CGGG--CCCCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cccc--ccccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 9987 5567899999986 56764 489999999999999999876654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=2.6e-14 Score=126.60 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=106.3
Q ss_pred HHHHHHH---HHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-
Q 043471 270 ETTKEFV---AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK- 343 (485)
Q Consensus 270 ~~~~~~~---~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~- 343 (485)
.....++ +.+.++||++|||+|||+|.++..+++.. +.+|+|+|+|+.|++.+++++...+ ++..+..|....
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~-~~~~i~~d~~~~~ 135 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKPE 135 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCGG
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC-CceEEEEECCCcc
Confidence 3344454 44578999999999999999999999976 3699999999999999999886544 677777777543
Q ss_pred --CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHh
Q 043471 344 --TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKD 421 (485)
Q Consensus 344 --~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 421 (485)
+.....+|+|++ .+.+.++...+++++.+.|||||++++............... . ..+..+ +.+
T Consensus 136 ~~~~~~~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~-v----------~~~v~~-l~~ 201 (227)
T d1g8aa_ 136 EYRALVPKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ-V----------FREVER-ELS 201 (227)
T ss_dssp GGTTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH-H----------HHHHHH-HHH
T ss_pred cccccccceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHH-H----------HHHHHH-HHH
Confidence 334467888876 355667788899999999999999999865443222111110 0 122333 446
Q ss_pred CCCeEEEEeec
Q 043471 422 AGFVDIIAEDR 432 (485)
Q Consensus 422 aGf~~~~~~~~ 432 (485)
.||++++..+.
T Consensus 202 ~gf~iie~i~L 212 (227)
T d1g8aa_ 202 EYFEVIERLNL 212 (227)
T ss_dssp TTSEEEEEEEC
T ss_pred cCCEEEEEEcC
Confidence 79999876554
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.58 E-value=5.4e-15 Score=130.56 Aligned_cols=109 Identities=24% Similarity=0.325 Sum_probs=94.1
Q ss_pred hHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 269 IETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
+.....+++.+.++++.+|||||||+|.++..+++. ..+|+++|+++.+++.|++++... .++.++.+|......+.+
T Consensus 56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~-~nv~~~~~d~~~g~~~~~ 133 (224)
T d1vbfa_ 56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTLGYEEEK 133 (224)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGGCCGGGC
T ss_pred hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc-cccccccCchhhcchhhh
Confidence 456677899999999999999999999999988887 569999999999999999988764 589999999876544568
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+||+|++..++.+++ ..+.+.|||||++++-
T Consensus 134 pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 134 PYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp CEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred hHHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 899999999988876 3567889999999875
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=6.1e-16 Score=146.75 Aligned_cols=137 Identities=23% Similarity=0.375 Sum_probs=98.7
Q ss_pred HhhhcCcCcchhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHH
Q 043471 16 YWMEHSANLTVEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE 94 (485)
Q Consensus 16 yw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~ 94 (485)
|++.++....|..|+.|..... ..++.+.+.....++.+|||||||+|.+++.++++|+ +|+|+|.|+ ++..|++
T Consensus 3 yf~~y~~~~~h~~ml~D~~r~~---~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~ 78 (328)
T d1g6q1_ 3 YFDSYDHYGIHEEMLQDTVRTL---SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKE 78 (328)
T ss_dssp CCCCCCCHHHHHHHHTCHHHHH---HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHH
T ss_pred cchhhcCchHHHHHhCCHHHHH---HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHH
Confidence 3443333334566666533211 2334455544556789999999999999999999986 899999997 5555555
Q ss_pred H---cCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEE
Q 043471 95 V---NGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 95 ~---~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
. ++...+++++++++.+ +++++++||+|++..+.+++.. .....++..+.++|||||.++-.
T Consensus 79 ~~~~~~~~~~i~~i~~~~~~--l~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~ 144 (328)
T d1g6q1_ 79 LVELNGFSDKITLLRGKLED--VHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp HHHHTTCTTTEEEEESCTTT--SCCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred HHHHhCccccceEEEeehhh--ccCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEee
Confidence 3 3334589999999998 5667889999999777665543 23778999999999999988653
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=2e-15 Score=135.62 Aligned_cols=112 Identities=16% Similarity=0.233 Sum_probs=87.1
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPD 113 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~ 113 (485)
+.....++..+...+|.+|||+|||+|.++..|++. ..+|+++|+++++++.|+++... ..++++..+|+.+.
T Consensus 71 pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 71 EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp ----------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 344567788899999999999999999999999986 35899999999999999997543 35899999999873
Q ss_pred CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 114 LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 114 ~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++++||+|++. +++ ...++.++.++|||||.+++..++
T Consensus 150 --~~~~~fD~V~ld-----~p~--p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 150 --ISDQMYDAVIAD-----IPD--PWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp --CCSCCEEEEEEC-----CSC--GGGSHHHHHHTEEEEEEEEEEESS
T ss_pred --cccceeeeeeec-----CCc--hHHHHHHHHHhcCCCceEEEEeCC
Confidence 367899999863 455 347999999999999999986554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=4.2e-15 Score=132.07 Aligned_cols=111 Identities=23% Similarity=0.290 Sum_probs=94.2
Q ss_pred HHHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCC------CCCeEEEEcc
Q 043471 270 ETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGL------KCSVEFEVAD 339 (485)
Q Consensus 270 ~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~------~~~i~~~~~d 339 (485)
.....+++.+ .+++|.+|||||||+|..+..+++.. ..+|+++|+++++++.|++++... ..++.+..+|
T Consensus 61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD 140 (224)
T d1i1na_ 61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD 140 (224)
T ss_dssp HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence 4567888888 68899999999999999998888764 359999999999999999887521 2478899999
Q ss_pred CCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 340 CTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 340 ~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+...+.++++||+|++..++++++ ..+.+.|||||++++..
T Consensus 141 ~~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 141 GRMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred cccccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence 988777778999999999998876 45788999999998853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.7e-14 Score=134.52 Aligned_cols=112 Identities=20% Similarity=0.371 Sum_probs=93.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc------------CCCCCeEE
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI------------GLKCSVEF 335 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~------------~~~~~i~~ 335 (485)
.-+..++..+.++||++|||+|||+|.++..|++.. +.+|+++|+++++++.|++++. ....++++
T Consensus 85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 456788899999999999999999999999999876 4599999999999999999875 33468999
Q ss_pred EEccCCCCC--CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 336 EVADCTKKT--YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 336 ~~~d~~~~~--~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.+.|+.... +++.+||.|+. .++++..++.++.++|||||++++..
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp EESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred EecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 999998753 35678999975 56788889999999999999998863
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.9e-15 Score=141.01 Aligned_cols=128 Identities=19% Similarity=0.317 Sum_probs=97.0
Q ss_pred hhhhhcCCCcCccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHH--cCCCCCe
Q 043471 26 VEAMMLDSKASDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEV--NGHFENV 102 (485)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~--~~~~~~~ 102 (485)
|.+|+.|.... ...++.+.+.....++++|||||||+|.+++.+|+.|+ +|+|+|.|+.+...++.. ++...++
T Consensus 10 h~~ml~D~~r~---~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i 86 (311)
T d2fyta1 10 HEEMLKDKIRT---ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTI 86 (311)
T ss_dssp HHHHHTCHHHH---HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTE
T ss_pred HHHHhCCHHHH---HHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccc
Confidence 55666653322 23344555555667889999999999999999999986 899999999987544432 3334689
Q ss_pred EEEEeeccCCCCCCCCCCeeEEEhhhhhhccCh-HHHHHHHHHHHhhcccCcEEEEE
Q 043471 103 KFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSD-KEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 103 ~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++.+|+.+ +++++.+||+|++..+.++... ...+.++..+.++|+|||.++.+
T Consensus 87 ~~~~~~~~~--l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 87 TLIKGKIEE--VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp EEEESCTTT--SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred eEEEeeHHH--hcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 999999998 5567789999999877666543 33678888889999999998754
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=6.8e-15 Score=128.41 Aligned_cols=103 Identities=18% Similarity=0.254 Sum_probs=88.5
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~ 359 (485)
+..|||||||+|.++..+|+.. +..++|+|+++.++..|.++....+ .|+.++++|+..+. ++++++|.|++....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 3479999999999999999986 6799999999999999998876433 48999999998764 778999999998887
Q ss_pred cccCCH--------HHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQDK--------PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~~--------~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.|.... +.+|++++|+|||||.|.|.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 776433 589999999999999998874
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.9e-14 Score=127.48 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=91.0
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCeeE
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVDM 123 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D~ 123 (485)
+.+++.+|++|||+|||+|..+.+|++. | .+|+|+|+|+.|++.++++....+++..+..|..... .+.....+|+
T Consensus 67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~ 146 (227)
T d1g8aa_ 67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence 5567889999999999999999999997 3 5899999999999999999877788999999987643 2344578898
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|++. +.|..+ ...+++++.+.|||||+++++..
T Consensus 147 i~~d--~~~~~~--~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 147 IFED--VAQPTQ--AKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp EEEC--CCSTTH--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEE--ccccch--HHHHHHHHHHhcccCCeEEEEEE
Confidence 8874 455555 56899999999999999998644
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=7.5e-15 Score=130.45 Aligned_cols=107 Identities=22% Similarity=0.306 Sum_probs=89.6
Q ss_pred hhHHHhccC--CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC-------CCCeEEEEeec
Q 043471 42 ERPEVLSLL--PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH-------FENVKFMCADV 109 (485)
Q Consensus 42 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~-------~~~~~~~~~d~ 109 (485)
....+++.| ..++|.+|||||||+|+.+..|++. ..+|+++|+++++++.|+++... ..++.++.+|.
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~ 141 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG 141 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence 446788887 5678999999999999999999886 45899999999999999876532 35789999998
Q ss_pred cCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 110 TSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 110 ~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.. ...+.++||+|++..+++++++ ++.+.|||||++++.
T Consensus 142 ~~--~~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~p 180 (224)
T d1i1na_ 142 RM--GYAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILP 180 (224)
T ss_dssp GG--CCGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred cc--ccchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEE
Confidence 77 4456789999999999888875 367899999999984
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=4.4e-15 Score=129.66 Aligned_cols=105 Identities=21% Similarity=0.341 Sum_probs=86.1
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
+..|||||||+|..+..+|++ ..+++|+|+++.++..|.++.. ...|+.++++|+..+.-.++++++|.|++....
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~ 109 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD 109 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence 457999999999999999998 4689999999999998887643 345999999999873212788999999998877
Q ss_pred hccChHH------HHHHHHHHHhhcccCcEEEEEe
Q 043471 131 MYLSDKE------VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.|..... ...++++++|+|||||.|++.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 7665421 1479999999999999998863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=3.5e-15 Score=140.59 Aligned_cols=113 Identities=21% Similarity=0.286 Sum_probs=87.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHH--HcCCCCCeEEEEeeccCCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEE--VNGHFENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~--~~~~~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
+.+.+.....++++|||||||+|.++..+++.|+ +|+|+|.|+.+....+. .++...+++++++|+.+ ++++.++
T Consensus 23 ~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~--~~~~~~~ 100 (316)
T d1oria_ 23 NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEE--VELPVEK 100 (316)
T ss_dssp HHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTT--CCCSSSC
T ss_pred HHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHH--cccccce
Confidence 3444443445788999999999999999999985 79999999876443332 23344589999999998 5567789
Q ss_pred eeEEEhhhhhhccChH-HHHHHHHHHHhhcccCcEEEEE
Q 043471 121 VDMMFSNWLLMYLSDK-EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
||+|++..+.+++..+ ..+.++..+.++|+|||.++..
T Consensus 101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~ 139 (316)
T d1oria_ 101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD 139 (316)
T ss_dssp EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEee
Confidence 9999997766665432 3778999999999999998753
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.7e-15 Score=140.69 Aligned_cols=119 Identities=15% Similarity=0.235 Sum_probs=95.3
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcC-----------CCCCeE
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNG-----------HFENVK 103 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~-----------~~~~~~ 103 (485)
.........+++.+...++.+|||||||+|..+..+++. ++ +++|||+|+.+++.|++... ..++++
T Consensus 134 e~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~ 213 (328)
T d1nw3a_ 134 ETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYT 213 (328)
T ss_dssp CCCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEE
T ss_pred hhHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceE
Confidence 355566788999999999999999999999999999876 44 79999999999998876532 235899
Q ss_pred EEEeeccCCCCCCCCCCe--eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 104 FMCADVTSPDLTFSEDSV--DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 104 ~~~~d~~~~~~~~~~~~~--D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++++|+.+ .++.+..+ |+|+++. +.|.++ ....++++.+.|||||.++....
T Consensus 214 ~~~gd~~~--~~~~~~~~~advi~~~~-~~f~~~--~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 214 LERGDFLS--EEWRERIANTSVIFVNN-FAFGPE--VDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp EEECCTTS--HHHHHHHHHCSEEEECC-TTTCHH--HHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEECcccc--cccccccCcceEEEEcc-eecchH--HHHHHHHHHHhCCCCcEEEEecc
Confidence 99999987 44555444 6677654 556655 67999999999999999987543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.50 E-value=1.7e-13 Score=123.01 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=113.7
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~ 348 (485)
....+++.+. .....+|||||||+|.++..+++++ +.+++..|. |..++.+ ....+++++.+|+.+ +.|
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-----~~~~ri~~~~gd~~~-~~p-- 138 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA-----PPLSGIEHVGGDMFA-SVP-- 138 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCCTTEEEEECCTTT-CCC--
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc-----CCCCCeEEecCCccc-ccc--
Confidence 3456777776 5666899999999999999999988 689999998 4444322 234689999999875 344
Q ss_pred CccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEEecccCCCCCChh---HHHH-----HHhcCCCCCCHHHHHHH
Q 043471 349 SFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE---FSEY-----IKQRGYDLHDVKSYGQM 418 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~ 418 (485)
..|++++..++|+.+| ...+|+++++.|+|||+++|.+...+....... +... ....+....|.++|.++
T Consensus 139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~l 218 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKL 218 (244)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHH
T ss_pred cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHH
Confidence 4599999999999975 557899999999999999999876544332211 1111 11123345689999999
Q ss_pred HHhCCCeEEEEee
Q 043471 419 LKDAGFVDIIAED 431 (485)
Q Consensus 419 l~~aGf~~~~~~~ 431 (485)
|++|||+.+++..
T Consensus 219 l~~AGF~~v~v~~ 231 (244)
T d1fp1d2 219 SKLSGFSKFQVAC 231 (244)
T ss_dssp HHHTTCSEEEEEE
T ss_pred HHHcCCCceEEEe
Confidence 9999999988754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.50 E-value=3.2e-14 Score=124.71 Aligned_cols=110 Identities=24% Similarity=0.352 Sum_probs=96.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.....+++.+.++++.+|||||||+|..+..+++..+.+|+++|.++.+++.|++++...+ .++.+.++|...-..+.+
T Consensus 65 ~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~ 144 (215)
T d1jg1a_ 65 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 144 (215)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred hhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence 4668889999999999999999999999999888767789999999999999999987655 689999999988655678
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+||.|++..++.+++ ..+...|+|||++++-
T Consensus 145 pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 145 PYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIP 175 (215)
T ss_dssp CEEEEEECSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred cceeEEeecccccCC------HHHHHhcCCCCEEEEE
Confidence 999999999998876 3466789999999875
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=8.7e-14 Score=126.35 Aligned_cols=136 Identities=20% Similarity=0.279 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCC
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPEN 348 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~ 348 (485)
.++..++... ..+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++..++ .+++++++|+.+ +++++
T Consensus 97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-~~~~~ 174 (274)
T d2b3ta1 97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-ALAGQ 174 (274)
T ss_dssp HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-GGTTC
T ss_pred hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-ccCCC
Confidence 4455555543 445689999999999999998876 6899999999999999999987544 379999999876 45567
Q ss_pred CccEEEEccccccc-------------C------------CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHH
Q 043471 349 SFDVIYSRDTILHI-------------Q------------DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIK 403 (485)
Q Consensus 349 ~fD~i~~~~~~~~~-------------~------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 403 (485)
+||+|+|+...... + ....+++++.+.|+|||.+++.. .
T Consensus 175 ~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g--------------- 238 (274)
T d2b3ta1 175 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-G--------------- 238 (274)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-C---------------
T ss_pred ceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-C---------------
Confidence 99999998543211 1 13457899999999999999862 1
Q ss_pred hcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 404 QRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
......+.++++++||..+++
T Consensus 239 -----~~q~~~v~~~l~~~gf~~i~~ 259 (274)
T d2b3ta1 239 -----WQQGEAVRQAFILAGYHDVET 259 (274)
T ss_dssp -----SSCHHHHHHHHHHTTCTTCCE
T ss_pred -----chHHHHHHHHHHHCCCCeEEE
Confidence 112467889999999975543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=1.6e-14 Score=131.40 Aligned_cols=132 Identities=21% Similarity=0.261 Sum_probs=102.9
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTS 111 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~ 111 (485)
..+.....++..+...+|.+|||+|||+|.++..||+. +.+|+++|+++++++.|+++... ..++.+...|+..
T Consensus 87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~ 166 (266)
T d1o54a_ 87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 166 (266)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence 44456678899999999999999999999999999986 45899999999999999987543 2478888888753
Q ss_pred CCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhcc
Q 043471 112 PDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQ 191 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (485)
.++...||.|+. ++++ ...+++++.++|||||.+++..++.. ..+...+.+++.|
T Consensus 167 ---~~~~~~~D~V~~-----d~p~--p~~~l~~~~~~LKpGG~lv~~~P~~~---------------Qv~~~~~~l~~~g 221 (266)
T d1o54a_ 167 ---GFDEKDVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVCPTTN---------------QVQETLKKLQELP 221 (266)
T ss_dssp ---CCSCCSEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEESSHH---------------HHHHHHHHHHHSS
T ss_pred ---cccccceeeeEe-----cCCC--HHHHHHHHHhhcCCCCEEEEEeCccc---------------HHHHHHHHHHHCC
Confidence 345678998864 5676 44899999999999999998655421 2234455566777
Q ss_pred eec
Q 043471 192 IQD 194 (485)
Q Consensus 192 ~~~ 194 (485)
|..
T Consensus 222 F~~ 224 (266)
T d1o54a_ 222 FIR 224 (266)
T ss_dssp EEE
T ss_pred cee
Confidence 744
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.48 E-value=1.3e-13 Score=120.27 Aligned_cols=103 Identities=19% Similarity=0.331 Sum_probs=86.3
Q ss_pred CCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC--CCCCCccEEEEcccc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT--YPENSFDVIYSRDTI 359 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~--~~~~~fD~i~~~~~~ 359 (485)
...|||||||+|.++..+|+.. +..++|+|+++.++..|.+++...+ .|+.+..+|+..+. +++.++|.|++...-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 3479999999999999999987 7899999999999999988776433 48999999998764 678899999987665
Q ss_pred cccCC--------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 360 LHIQD--------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 360 ~~~~~--------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
-+... ...+|+.+.++|||||.+.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 44432 2689999999999999998864
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.48 E-value=4.4e-14 Score=123.18 Aligned_cols=105 Identities=20% Similarity=0.317 Sum_probs=84.9
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDLTFSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~ 130 (485)
...|||||||+|.++..+|+. ...++|+|+++.++..|.++.. ..+|+.++.+|+..+.-.++++++|.|+++..-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 457999999999999999998 5589999999999998877643 346999999999875333778999999987765
Q ss_pred hccChHH------HHHHHHHHHhhcccCcEEEEEe
Q 043471 131 MYLSDKE------VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 131 ~~~~~~~------~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.+..... ...+++.+.++|+|||.|++.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 4443211 2579999999999999998853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=9e-14 Score=129.55 Aligned_cols=117 Identities=21% Similarity=0.206 Sum_probs=91.2
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-c--CcEEEEeCChHHHHHHHHHcC-------------CCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-A--GHVIALDFIDSVIKKNEEVNG-------------HFEN 101 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~v~giD~s~~~~~~a~~~~~-------------~~~~ 101 (485)
..+.....++..+...+|.+|||+|||+|.++..||+. + .+|+++|+++++++.|+++.. ...+
T Consensus 82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 44456678889999999999999999999999999987 3 489999999999999998642 1258
Q ss_pred eEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 102 VKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 102 ~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+++..+|+......+++..||.|+. .+++ ...++.++.++|||||.+++-.++
T Consensus 162 v~~~~~di~~~~~~~~~~~fD~V~L-----D~p~--P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 162 VDFIHKDISGATEDIKSLTFDAVAL-----DMLN--PHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp EEEEESCTTCCC-------EEEEEE-----CSSS--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred eeEEecchhhcccccCCCCcceEee-----cCcC--HHHHHHHHHHhccCCCEEEEEeCC
Confidence 9999999987544456788999986 3444 236899999999999999986554
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=1.2e-13 Score=130.77 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=85.3
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++++|||||||+|.++..+++....+|+|+|.|+ ++..|+++.. +...+++++.+|+.++++++++||+|++..+
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~ 114 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence 346889999999999999988887435999999996 5677776554 5567899999999999998899999999766
Q ss_pred cccc---CCHHHHHHHHHhcCCCCcEEE
Q 043471 359 ILHI---QDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 359 ~~~~---~~~~~~l~~~~~~LkpgG~l~ 383 (485)
.+++ .....++..+.|+|||||.++
T Consensus 115 ~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 115 GYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 6554 568889999999999999985
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=1.1e-13 Score=132.35 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=91.9
Q ss_pred chHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcC---------C-CCCeEE-
Q 043471 268 GIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIG---------L-KCSVEF- 335 (485)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~---------~-~~~i~~- 335 (485)
....+.++++.+.++++++|||||||+|.++..+|..+++ +++|||+|+.|++.|+++... . ...+.+
T Consensus 201 ~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~ 280 (406)
T d1u2za_ 201 LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFS 280 (406)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceee
Confidence 3578899999999999999999999999999999988775 899999999999999987642 1 112333
Q ss_pred EEccCCCCCCC---CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 336 EVADCTKKTYP---ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 336 ~~~d~~~~~~~---~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..++....+.. -..+|+|+++. +.|.++...+|+++.+.|||||+++..+.
T Consensus 281 ~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 281 LKKSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp ESSCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeechhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 23333332211 13467888754 56778899999999999999999988754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=8.4e-14 Score=121.98 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=93.5
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLT 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~ 115 (485)
.+.....+++.+...++.+|||||||+|+.+..|++. +.+|+++|..+++++.|+++... ..|+.++++|... ..
T Consensus 63 ~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~--g~ 140 (215)
T d1jg1a_ 63 APHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK--GF 140 (215)
T ss_dssp CHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--CC
T ss_pred hhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcccc--CC
Confidence 3445578899999999999999999999999999987 77899999999999999987643 3699999999976 33
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...++||+|++..++.++++. +.+.|+|||++++-
T Consensus 141 ~~~~pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 141 PPKAPYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp GGGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred cccCcceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 457899999999988888762 56679999999884
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.8e-13 Score=125.57 Aligned_cols=106 Identities=23% Similarity=0.219 Sum_probs=85.5
Q ss_pred cCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHh-cCCCCCeEEEEccCCCCCCCCCCccEEEEcc
Q 043471 279 LDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA-IGLKCSVEFEVADCTKKTYPENSFDVIYSRD 357 (485)
Q Consensus 279 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~-~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~ 357 (485)
....++++|||||||+|.++..+++....+|+|+|.|+.+...++... .+...++.++.+|+.+++++.++||+|++..
T Consensus 31 ~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 31 PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 110 (311)
T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred cccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence 345578899999999999999998873358999999998875444332 2556789999999999998889999999977
Q ss_pred cccccC---CHHHHHHHHHhcCCCCcEEEE
Q 043471 358 TILHIQ---DKPALFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 358 ~~~~~~---~~~~~l~~~~~~LkpgG~l~i 384 (485)
..+++. ..+.++....++|||||+++-
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 666653 356777888899999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=2e-13 Score=120.62 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred HHHHHHHHHc--CCCCCCEEEEECCCCChhHHHHhhcC---C----CEEEEEeCCHHHHHHHHHHhcCC------CCCeE
Q 043471 270 ETTKEFVAKL--DLKPGQKVLDVGCGIGGGDFYMADKF---D----VHVVGIDLSINMISFALERAIGL------KCSVE 334 (485)
Q Consensus 270 ~~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~~---~----~~v~g~D~s~~~~~~a~~~~~~~------~~~i~ 334 (485)
.....+++.+ .++++.+|||||||+|..+..+++.. | .+|+++|+++++++.|++++... ..++.
T Consensus 65 ~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~ 144 (223)
T d1r18a_ 65 HMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLL 144 (223)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEE
T ss_pred hhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEE
Confidence 4567888887 78899999999999999998887754 2 48999999999999998875421 13799
Q ss_pred EEEccCCCCCCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 335 FEVADCTKKTYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 335 ~~~~d~~~~~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
+..+|......+.++||.|++..++.+++ ..+.+.|||||++++.
T Consensus 145 ~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 145 IVEGDGRKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVP 189 (223)
T ss_dssp EEESCGGGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEE
T ss_pred EEecccccccccccceeeEEEEeechhch------HHHHHhcCCCcEEEEE
Confidence 99999988666678999999999998876 3567899999999875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=5.9e-13 Score=125.05 Aligned_cols=103 Identities=24% Similarity=0.282 Sum_probs=84.6
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHh--cCCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERA--IGLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~--~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
..++++|||||||+|.++..+++....+|+|+|.|+.+ ..+++.. .++..+++++++|+.+++++.++||+|++...
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 109 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence 34688999999999999998888733589999999865 4454443 35667899999999999988899999999766
Q ss_pred cccc---CCHHHHHHHHHhcCCCCcEEEE
Q 043471 359 ILHI---QDKPALFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 359 ~~~~---~~~~~~l~~~~~~LkpgG~l~i 384 (485)
.+++ ...+.++..+.++|||||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6555 4678999999999999999864
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7e-13 Score=120.28 Aligned_cols=130 Identities=20% Similarity=0.372 Sum_probs=96.8
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~ 119 (485)
...++... ..+.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|+++... ..+++++++|+.+. ++++
T Consensus 99 ~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~---~~~~ 174 (274)
T d2b3ta1 99 EQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA---LAGQ 174 (274)
T ss_dssp HHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG---GTTC
T ss_pred hhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc---cCCC
Confidence 34444433 34678999999999999999886 56999999999999999987532 24799999998652 3567
Q ss_pred CeeEEEhhhhhhccCh-------------------------HHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccCCCC
Q 043471 120 SVDMMFSNWLLMYLSD-------------------------KEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRKHNP 174 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~-------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 174 (485)
+||+|+|+ ..+++. ....++++++.+.|+|||.+++- ...
T Consensus 175 ~fDlIvsN--PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE-ig~------------ 239 (274)
T d2b3ta1 175 QFAMIVSN--PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE-HGW------------ 239 (274)
T ss_dssp CEEEEEEC--CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE-CCS------------
T ss_pred ceeEEEec--chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE-ECc------------
Confidence 99999997 222221 12557889999999999999983 221
Q ss_pred CCCCChhHHHHHhhhcceecC
Q 043471 175 THYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~ 195 (485)
...+...+++++.||..+
T Consensus 240 ---~q~~~v~~~l~~~gf~~i 257 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDV 257 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTC
T ss_pred ---hHHHHHHHHHHHCCCCeE
Confidence 145677888888888543
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=4.9e-12 Score=114.39 Aligned_cols=130 Identities=16% Similarity=0.112 Sum_probs=102.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCCCCCCCccEEEEccc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKTYPENSFDVIYSRDT 358 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~ 358 (485)
+++|.+|||+|||+|.++..++++..++|+++|++|.+++.+++++. ++..++++.++|+.+++ +.+.||.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECCC
Confidence 56899999999999999999998755699999999999999999886 55668999999998875 3578999987532
Q ss_pred ccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 359 ILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 359 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
+....++..+.++|+|||++.+......... .....+.+.+..+..||++...
T Consensus 184 ----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~--------------~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 184 ----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLM--------------PREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp ----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGT--------------TTTTHHHHHHHHHHTTCEEEEE
T ss_pred ----CchHHHHHHHHhhcCCCCEEEEEeccccccc--------------hhhHHHHHHHHHHHcCCceEEE
Confidence 3456778889999999999977654332211 1123466778888999987543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.37 E-value=3.2e-12 Score=114.62 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=107.1
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
...+|||||||+|.++..+++++ +.+++..|. |..++.+ +...+++++.+|+.+. .+ .+|++++..++|+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~-----~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL-----SGSNNLTYVGGDMFTS-IP--NADAVLLKYILHN 150 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC-----CCBTTEEEEECCTTTC-CC--CCSEEEEESCGGG
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC-----cccCceEEEecCcccC-CC--CCcEEEEEeeccc
Confidence 34589999999999999999998 789999998 5544432 3346899999999763 33 5899999999999
Q ss_pred cCCH--HHHHHHHHhcCCCC---cEEEEEecccCCCCCChhHH---HHH----HhcCCCCCCHHHHHHHHHhCCCeEEEE
Q 043471 362 IQDK--PALFKSFFKWLKPG---GTVLISDYCKSFGTPSVEFS---EYI----KQRGYDLHDVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 362 ~~~~--~~~l~~~~~~Lkpg---G~l~i~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~~~l~~aGf~~~~~ 429 (485)
.+|. .++|+++++.|+|| |+++|.+............. ... ...+....+.++|.++|+++||+++++
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~~i 230 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHYKI 230 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceEEE
Confidence 9764 47899999999999 78888876654443322111 111 112235678999999999999999988
Q ss_pred eecc
Q 043471 430 EDRT 433 (485)
Q Consensus 430 ~~~~ 433 (485)
....
T Consensus 231 ~~~~ 234 (244)
T d1fp2a2 231 SPLT 234 (244)
T ss_dssp EEEE
T ss_pred EECC
Confidence 6543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.37 E-value=1.3e-13 Score=131.74 Aligned_cols=121 Identities=18% Similarity=0.239 Sum_probs=88.2
Q ss_pred ccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCC-----------CCCeE
Q 043471 37 DLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGH-----------FENVK 103 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~-----------~~~~~ 103 (485)
.+..+....+++.+...++++|||||||+|..+..+|+. ++ +|+|||+|+.|++.|+++... .+.+.
T Consensus 199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~ 278 (406)
T d1u2za_ 199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE 278 (406)
T ss_dssp CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence 455667788999999999999999999999999999987 54 799999999999999886431 12233
Q ss_pred E-EEeeccCCCC-CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 104 F-MCADVTSPDL-TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 104 ~-~~~d~~~~~~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+ ..++....+. ...-..+|+|+++. ++|.++ ....++++.+.|||||.|+..+.
T Consensus 279 ~~~~~~f~~~~~~d~~~~~adVV~inn-~~f~~~--l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 279 FSLKKSFVDNNRVAELIPQCDVILVNN-FLFDED--LNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EEESSCSTTCHHHHHHGGGCSEEEECC-TTCCHH--HHHHHHHHHTTCCTTCEEEESSC
T ss_pred eeeeechhhccccccccccceEEEEec-ccCchH--HHHHHHHHHHhcCCCcEEEEecc
Confidence 3 2333322110 00113567888764 455555 77999999999999999987653
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.36 E-value=4.8e-13 Score=118.10 Aligned_cols=107 Identities=11% Similarity=0.164 Sum_probs=87.4
Q ss_pred hhHHHhccC--CCCCCCcEEEEcCCCCcchHHHHhh----c----CcEEEEeCChHHHHHHHHHcC-------CCCCeEE
Q 043471 42 ERPEVLSLL--PPYEGKTVLEFGAGIGRFTGELAKK----A----GHVIALDFIDSVIKKNEEVNG-------HFENVKF 104 (485)
Q Consensus 42 ~~~~~~~~~--~~~~~~~vLDiGcG~G~~~~~l~~~----~----~~v~giD~s~~~~~~a~~~~~-------~~~~~~~ 104 (485)
....+++.+ ...++.+|||||||+|+.+..|++. | .+|+++|+++++++.|+++.. ...|+.+
T Consensus 66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~ 145 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI 145 (223)
T ss_dssp HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence 445778887 5778999999999999999888875 2 379999999999999987632 1258999
Q ss_pred EEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 105 MCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 105 ~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+.+|... ...+.++||+|++..++.++++ .+.+.|+|||++++-
T Consensus 146 ~~~d~~~--~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 146 VEGDGRK--GYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp EESCGGG--CCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred Eeccccc--ccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9999877 3345679999999999888875 267899999999884
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.33 E-value=9.4e-12 Score=111.83 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=110.4
Q ss_pred HHHHHHHcCC-CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 272 TKEFVAKLDL-KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 272 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
...+++.+.. ....+|||||||+|.++..+++++ +.++++.|..+. ++.+ ....++++..+|+.+ +.|.
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~~~-----~~~~r~~~~~~d~~~-~~P~-- 139 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IEDA-----PSYPGVEHVGGDMFV-SIPK-- 139 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TTTC-----CCCTTEEEEECCTTT-CCCC--
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hhhc-----ccCCceEEecccccc-cCCC--
Confidence 4556666654 335689999999999999999998 789999998543 3222 234589999999865 3443
Q ss_pred ccEEEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEecccCCCCCChh---HH---HHH---HhcCCCCCCHHHHHHH
Q 043471 350 FDVIYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVE---FS---EYI---KQRGYDLHDVKSYGQM 418 (485)
Q Consensus 350 fD~i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---~~---~~~---~~~~~~~~~~~~~~~~ 418 (485)
.|+++...++|..+ +...+|+++++.|+|||+++|.+........... .. ... ...+....+.++|+++
T Consensus 140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~l 219 (243)
T d1kyza2 140 ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDL 219 (243)
T ss_dssp CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHH
T ss_pred cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHH
Confidence 57788888888886 4667899999999999999999876543322211 11 111 1112345689999999
Q ss_pred HHhCCCeEEEEeec
Q 043471 419 LKDAGFVDIIAEDR 432 (485)
Q Consensus 419 l~~aGf~~~~~~~~ 432 (485)
|++|||+++++...
T Consensus 220 l~~AGf~~vkv~~~ 233 (243)
T d1kyza2 220 AKGAGFQGFKVHCN 233 (243)
T ss_dssp HHHHCCSCEEEEEE
T ss_pred HHHcCCCcEEEEEe
Confidence 99999999988644
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=2.1e-12 Score=110.97 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=99.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-----
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK----- 343 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~----- 343 (485)
-++.++++.+.+.++..+||++||+|..+..+++++ +++|+|+|.++.|++.|++++.....++.++++++.++
T Consensus 10 Vll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 10 VMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp TTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 456788999999999999999999999999999986 67999999999999999999987777899999988764
Q ss_pred CCCCCCccEEEEccccc---------ccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 TYPENSFDVIYSRDTIL---------HIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 ~~~~~~fD~i~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+..++||.|+.-..+. .+......|..+.++|+|||++++..+.
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 24467899998754331 1234667899999999999999988653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.29 E-value=7.2e-12 Score=112.21 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=106.1
Q ss_pred hhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCC
Q 043471 42 ERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 42 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (485)
....+++.++. ....+|||||||+|.++..++++ +.+++..|+. +.++ ......+++++.+|+.+. + |
T Consensus 68 ~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~----~~~~~~ri~~~~gd~~~~-~--p- 138 (244)
T d1fp1d2 68 EMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE----NAPPLSGIEHVGGDMFAS-V--P- 138 (244)
T ss_dssp HHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT----TCCCCTTEEEEECCTTTC-C--C-
T ss_pred HHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh----ccCCCCCeEEecCCcccc-c--c-
Confidence 34556666663 44579999999999999999998 4578888974 3332 233346899999998652 2 2
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCccccC-------------CCCCCCCChhHHHH
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKRK-------------HNPTHYREPRFYSK 185 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 185 (485)
..|++++..++|++++++..++|+++++.|+|||.++|.+............ ...-.-++.+.|.+
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ 217 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK 217 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHH
Confidence 4699999999999999989999999999999999999988764332211100 00112246788999
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
+++++||+..
T Consensus 218 ll~~AGF~~v 227 (244)
T d1fp1d2 218 LSKLSGFSKF 227 (244)
T ss_dssp HHHHTTCSEE
T ss_pred HHHHcCCCce
Confidence 9999999653
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.27 E-value=1.8e-12 Score=107.81 Aligned_cols=113 Identities=11% Similarity=0.145 Sum_probs=84.1
Q ss_pred HHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCC
Q 043471 44 PEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 44 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~ 118 (485)
+.+...+.. .+|.+|||+|||+|.+++.++.+|+ +|+++|.++.+++.+++.... ..+++++++|+... +....
T Consensus 3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~-l~~~~ 81 (152)
T d2esra1 3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA-IDCLT 81 (152)
T ss_dssp HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH-HHHBC
T ss_pred HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccc-ccccc
Confidence 444444443 4688999999999999998888875 899999999999998887543 24699999998763 23456
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHH--hhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMV--KWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~ 160 (485)
++||+|++. .++.. ......+..+. ++|+|||.+++...
T Consensus 82 ~~fDiIf~D-PPy~~--~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 82 GRFDLVFLD-PPYAK--ETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SCEEEEEEC-CSSHH--HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccceeEec-hhhcc--chHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 899999985 22221 22456666664 57999999998643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.26 E-value=1.4e-11 Score=111.41 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=85.6
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeeccCCCCCC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVN---GHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~~~~~~~~ 116 (485)
.++.++.+.+ .+|.+|||+|||+|.+++.+++++ .+|+++|+++.+++.++++. +-.++++++++|+.++.
T Consensus 96 ~er~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--- 170 (260)
T d2frna1 96 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--- 170 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC---
T ss_pred HHHHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc---
Confidence 4556666664 458899999999999999999886 59999999999999998764 33347999999998743
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+.+.||.|+++. .+. ...++.++.+.|+|||++.+.+.
T Consensus 171 ~~~~~D~Ii~~~--p~~----~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 171 GENIADRILMGY--VVR----THEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp CCSCEEEEEECC--CSS----GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCCCEEEECC--CCc----hHHHHHHHHhhcCCCCEEEEEec
Confidence 457899998752 111 23578888999999999977644
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.20 E-value=7.1e-12 Score=117.07 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=83.2
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCC--CCCCCCCeeEEEhhh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPD--LTFSEDSVDMMFSNW 128 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~--~~~~~~~~D~v~~~~ 128 (485)
.+|.+|||++||+|.++..+++.+.+|+++|+|+.+++.|+++.. ...+++++++|+.+.. ++...++||+|++.-
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 468899999999999999999888899999999999999998643 3358999999986521 122357899999752
Q ss_pred hhhccC-------hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 129 LLMYLS-------DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 129 ~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
...... .....+++..+.++|+|||.|+++..+
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 110000 112557888999999999999987654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.19 E-value=1.9e-11 Score=114.51 Aligned_cols=115 Identities=23% Similarity=0.249 Sum_probs=88.2
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC----CC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK----TY 345 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~----~~ 345 (485)
....+..+ ++++.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++. ++..++++.++|+.+. +.
T Consensus 135 ~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~ 213 (324)
T d2as0a2 135 NRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK 213 (324)
T ss_dssp HHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh
Confidence 33444443 56789999999999999999987733489999999999999999986 4445789999987542 23
Q ss_pred CCCCccEEEEccccccc---------CCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTILHI---------QDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
...+||+|++....... .+...++..+.++|+|||+++++..
T Consensus 214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 45789999996543211 1345678899999999999998853
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=4.5e-11 Score=103.21 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCcc----hHHHHhh----c--CcEEEEeCChHHHHHHHHHcC------------------C-C----
Q 043471 53 YEGKTVLEFGAGIGRF----TGELAKK----A--GHVIALDFIDSVIKKNEEVNG------------------H-F---- 99 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~----~~~l~~~----~--~~v~giD~s~~~~~~a~~~~~------------------~-~---- 99 (485)
.+..||+++|||+|.- +..+.+. + .+|+|+|+|+.+++.|++-.- . .
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 4456999999999973 3344443 1 269999999999999985210 0 0
Q ss_pred ----------CCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 100 ----------ENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 100 ----------~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..+.+...+.... .+.+.+.||+|+|.++|.+++++...++++++++.|+|||+|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEK-QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCS-SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhcccc-ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1234555554432 223457899999999999999988899999999999999999995
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.16 E-value=2.5e-11 Score=104.20 Aligned_cols=72 Identities=24% Similarity=0.251 Sum_probs=61.9
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEh
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFS 126 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~ 126 (485)
.......|++|||+|||+|.+++.++..|+ +|+|+|+++.+++.|+++. .+++++++|+..+ +++||+|++
T Consensus 42 ~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l-----~~~fD~Vi~ 113 (197)
T d1ne2a_ 42 YNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEI-----SGKYDTWIM 113 (197)
T ss_dssp HHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGC-----CCCEEEEEE
T ss_pred HHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccccEEEEehhhc-----CCcceEEEe
Confidence 334556789999999999999998888875 6999999999999999976 4789999999873 378999999
Q ss_pred h
Q 043471 127 N 127 (485)
Q Consensus 127 ~ 127 (485)
+
T Consensus 114 N 114 (197)
T d1ne2a_ 114 N 114 (197)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=4.4e-11 Score=107.11 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=98.6
Q ss_pred CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 55 GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
..+|||||||+|..+..++++ ..+++..|+. +.++. ....++++++.+|+.+. . ..+|++++..++|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~----~~~~~rv~~~~gD~f~~-~----p~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVEN----LSGSNNLTYVGGDMFTS-I----PNADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT----CCCBTTEEEEECCTTTC-C----CCCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHh----CcccCceEEEecCcccC-C----CCCcEEEEEeeccc
Confidence 468999999999999999998 5689999984 33332 23336899999998752 2 35799999999999
Q ss_pred cChHHHHHHHHHHHhhcccC---cEEEEEeccCCCCCcccc------------CCCCCCCCChhHHHHHhhhcceecC
Q 043471 133 LSDKEVEKLAERMVKWLKVG---GYIFFRESCFHQSGDSKR------------KHNPTHYREPRFYSKVFKECQIQDA 195 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pg---G~l~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (485)
++++...++|+++++.|+|| |.++|.+........... ....-.-++.+.|+++++++||+..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll~~AGf~~~ 228 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGFQHY 228 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHHHHTTCCEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHcCCceE
Confidence 99998999999999999999 778887765543221110 0011122467899999999999653
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.15 E-value=3.2e-11 Score=102.00 Aligned_cols=103 Identities=15% Similarity=0.143 Sum_probs=75.5
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC----CCCCCCCccEEEEc
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK----KTYPENSFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~----~~~~~~~fD~i~~~ 356 (485)
+.++.+|||+|||+|.++..++.+ |++++++|.++.+++.+++++...+...++...+... ......+||+|++.
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D 117 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence 467889999999999999988887 7899999999999999999987443333444433321 12345789999997
Q ss_pred ccccccCCHHHHHHHH--HhcCCCCcEEEEEe
Q 043471 357 DTILHIQDKPALFKSF--FKWLKPGGTVLISD 386 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~--~~~LkpgG~l~i~~ 386 (485)
..+.. +..+.+.++ ..+|+|||.+++..
T Consensus 118 PPY~~--~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 118 PPYAM--DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCTTS--CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccccc--CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 65432 334445544 35799999998874
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=4.5e-10 Score=100.75 Aligned_cols=80 Identities=9% Similarity=0.049 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCCC------CCCCCccEE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKKT------YPENSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~~------~~~~~fD~i 353 (485)
+..+|||+|||+|.++..++.+. +++++|+|+|+.+++.|++++. ++..++.+...+..... ..+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 34699999999999999999876 7899999999999999999986 45567888776554321 235689999
Q ss_pred EEccccccc
Q 043471 354 YSRDTILHI 362 (485)
Q Consensus 354 ~~~~~~~~~ 362 (485)
+|+..++.-
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 999887643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.14 E-value=3.5e-11 Score=112.76 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHc---CCCCCeEEEEeeccCCC--CCCCCCCeeEEEh
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN---GHFENVKFMCADVTSPD--LTFSEDSVDMMFS 126 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~~~~~--~~~~~~~~D~v~~ 126 (485)
.+|.+|||+|||+|.+++.++..|+ +|+++|+|+.+++.|+++. +...+++++++|+.+.. ++....+||+|++
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~ 223 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 223 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence 4588999999999999999998875 7999999999999998864 22347899999986521 1224578999997
Q ss_pred hhhhhccC--------hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 127 NWLLMYLS--------DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 127 ~~~~~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.-. .+.. ...+.+++..+.++|+|||.|+++..+
T Consensus 224 DpP-~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 224 DPP-AFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp CCC-CSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCc-cccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 532 1111 112556888899999999999997654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=1.2e-11 Score=115.53 Aligned_cols=104 Identities=22% Similarity=0.152 Sum_probs=82.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC----CCCCCCccEEEEcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK----TYPENSFDVIYSRD 357 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~----~~~~~~fD~i~~~~ 357 (485)
+|.+|||++||+|.++..++.. +.+|+++|+|+.+++.|++++...+ .+++++++|..+. +...++||+|++..
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5889999999999999998864 6799999999999999999987444 4789999987552 33457899999964
Q ss_pred ccccc---------CCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 358 TILHI---------QDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 358 ~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..... .+..+++..+.++|||||.++++..
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 32211 2345678899999999999988754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.12 E-value=1.5e-11 Score=103.98 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=79.8
Q ss_pred CccChhhhHHHhccCC--CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeecc
Q 043471 36 SDLDKEERPEVLSLLP--PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVT 110 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~ 110 (485)
++.....++.+...+. ..++.+|||+|||+|.+++.++.+|++|+++|.++.+++.++++... ..++....+|..
T Consensus 21 Rpt~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~ 100 (171)
T d1ws6a1 21 RPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVF 100 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHH
T ss_pred CCCcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcc
Confidence 4444455566555543 35688999999999999999999999999999999999999876432 223444344332
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHH--HhhcccCcEEEEEec
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERM--VKWLKVGGYIFFRES 160 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~--~~~L~pgG~l~~~~~ 160 (485)
.........+||+|++. ..++... .+.+.++ ..+|+|||++++...
T Consensus 101 ~~~~~~~~~~fD~If~D-PPY~~~~---~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 101 LPEAKAQGERFTVAFMA-PPYAMDL---AALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp HHHHHHTTCCEEEEEEC-CCTTSCT---THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cccccccCCccceeEEc-cccccCH---HHHHHHHHHcCCcCCCeEEEEEec
Confidence 11112345689999985 2333332 1233333 358999999988643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.11 E-value=3.9e-11 Score=99.50 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCC-CCCCCCccEEEEcccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKK-TYPENSFDVIYSRDTI 359 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~-~~~~~~fD~i~~~~~~ 359 (485)
.|.+|||+|||+|.++..++.+...+|+++|.++.+++.+++++... ..+++++++|+... +...++||+|++...+
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 57899999999999999888873349999999999999999998744 35689999998663 3446889999996543
Q ss_pred cccCCHHHHHHHHH--hcCCCCcEEEEEec
Q 043471 360 LHIQDKPALFKSFF--KWLKPGGTVLISDY 387 (485)
Q Consensus 360 ~~~~~~~~~l~~~~--~~LkpgG~l~i~~~ 387 (485)
. .......+..+. +.|+|||.+++...
T Consensus 94 ~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 94 A-KETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp H-HHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred c-cchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 2 223445566554 57999999998743
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.11 E-value=6.1e-11 Score=102.37 Aligned_cols=104 Identities=19% Similarity=0.321 Sum_probs=74.8
Q ss_pred CCCCEEEEECCCCChh----HHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhc------------------CC-----
Q 043471 282 KPGQKVLDVGCGIGGG----DFYMADKF-----DVHVVGIDLSINMISFALERAI------------------GL----- 329 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~----~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~------------------~~----- 329 (485)
.+..+|+++|||+|.- ++.+.+.. ..+++|+|+|+.+++.|++..- ..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 3456999999999974 33333321 2589999999999999984321 00
Q ss_pred ---------CCCeEEEEccCCCC-CCCCCCccEEEEcccccccCC--HHHHHHHHHhcCCCCcEEEEE
Q 043471 330 ---------KCSVEFEVADCTKK-TYPENSFDVIYSRDTILHIQD--KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 330 ---------~~~i~~~~~d~~~~-~~~~~~fD~i~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 385 (485)
...+.+...+.... +.+.++||+|+|.+++.|++. ..++++++++.|+|||.|++.
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 01234444454443 234578999999999999964 468999999999999998876
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.10 E-value=1.5e-10 Score=103.75 Aligned_cols=143 Identities=18% Similarity=0.271 Sum_probs=104.2
Q ss_pred hHHHhccCCCCC-CCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCC
Q 043471 43 RPEVLSLLPPYE-GKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSED 119 (485)
Q Consensus 43 ~~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~ 119 (485)
...+++.++..+ ..+|||||||+|..+..++++ +.++++.|+.+. ++ .....+++.++.+|+.+. +|
T Consensus 69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~----~~~~~~r~~~~~~d~~~~-~P---- 138 (243)
T d1kyza2 69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE----DAPSYPGVEHVGGDMFVS-IP---- 138 (243)
T ss_dssp HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT----TCCCCTTEEEEECCTTTC-CC----
T ss_pred HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh----hcccCCceEEeccccccc-CC----
Confidence 345666655433 568999999999999999998 558999998653 22 222336899999998652 33
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCCCcccc--------------CCCCCCCCChhHHHH
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQSGDSKR--------------KHNPTHYREPRFYSK 185 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ 185 (485)
..|+++...++|..+++....+|+++++.|+|||.+++.+........... ....-.-++.+.|++
T Consensus 139 ~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ 218 (243)
T d1kyza2 139 KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFED 218 (243)
T ss_dssp CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH
T ss_pred CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHH
Confidence 357778888999999988999999999999999999998876543221110 001112246778999
Q ss_pred HhhhcceecC
Q 043471 186 VFKECQIQDA 195 (485)
Q Consensus 186 ~~~~~~~~~~ 195 (485)
+++++||+..
T Consensus 219 ll~~AGf~~v 228 (243)
T d1kyza2 219 LAKGAGFQGF 228 (243)
T ss_dssp HHHHHCCSCE
T ss_pred HHHHcCCCcE
Confidence 9999999654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=6.5e-11 Score=101.48 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=90.5
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCC---CCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDL---TFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~---~~~ 117 (485)
+++++.+.+.++..+||++||+|.++..++++ +.+|+|+|.+++|++.|+++.... .++.+++++..+.+. .+.
T Consensus 13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~ 92 (192)
T d1m6ya2 13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG 92 (192)
T ss_dssp HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcC
Confidence 46778888899999999999999999999887 579999999999999999987653 489999998876321 234
Q ss_pred CCCeeEEEhhhh--hhccC-----hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 118 EDSVDMMFSNWL--LMYLS-----DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 118 ~~~~D~v~~~~~--~~~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
.++||.|+.-.. -+++. -....+.+..+.++|+|||.+++...
T Consensus 93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f 142 (192)
T d1m6ya2 93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISF 142 (192)
T ss_dssp CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEES
T ss_pred CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecc
Confidence 578999874311 11111 12366899999999999999987543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.07 E-value=1.7e-10 Score=100.14 Aligned_cols=78 Identities=26% Similarity=0.289 Sum_probs=64.4
Q ss_pred hccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccCCCCCCCCCCeeEE
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~D~v 124 (485)
....+..+|.+|||+|||+|.+++.++.+|+ +|+|+|+++.+++.|+++.... .+.+++.+|+..+ +++||+|
T Consensus 39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~-----~~~fD~V 113 (201)
T d1wy7a1 39 AYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIV 113 (201)
T ss_dssp HHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEE
T ss_pred HHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh-----CCcCcEE
Confidence 3445666889999999999999999888875 8999999999999999875433 3688999998763 3689999
Q ss_pred Ehhhh
Q 043471 125 FSNWL 129 (485)
Q Consensus 125 ~~~~~ 129 (485)
+++-.
T Consensus 114 i~nPP 118 (201)
T d1wy7a1 114 IMNPP 118 (201)
T ss_dssp EECCC
T ss_pred EEcCc
Confidence 98754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=99.06 E-value=3.2e-10 Score=100.43 Aligned_cols=97 Identities=19% Similarity=0.294 Sum_probs=80.6
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.++...+.+++.+...++++|||||||+|.++..|++.+.+|+++|+++.+++.++++....++++++.+|+.+.++ +
T Consensus 5 ~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~--~ 82 (235)
T d1qama_ 5 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKF--P 82 (235)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCC--C
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccc--c
Confidence 35567788999999999999999999999999999999999999999999999999988777899999999998654 3
Q ss_pred CCCeeEEEhhhhhhccChHH
Q 043471 118 EDSVDMMFSNWLLMYLSDKE 137 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~ 137 (485)
......|++ +..++++.+-
T Consensus 83 ~~~~~~vv~-NLPYnIss~i 101 (235)
T d1qama_ 83 KNQSYKIFG-NIPYNISTDI 101 (235)
T ss_dssp SSCCCEEEE-ECCGGGHHHH
T ss_pred ccccceeee-eehhhhhHHH
Confidence 333334554 4567777643
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=3.4e-10 Score=102.00 Aligned_cols=114 Identities=18% Similarity=0.192 Sum_probs=80.5
Q ss_pred HHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC--CCCCeEEEEccCCCC-CCCCC
Q 043471 272 TKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG--LKCSVEFEVADCTKK-TYPEN 348 (485)
Q Consensus 272 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~--~~~~i~~~~~d~~~~-~~~~~ 348 (485)
++.+++.....+..+|+|+|||+|..+..+++..+++|+++|+|+.+++.|++++.. ...++.+..+|..+. +...+
T Consensus 99 v~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~ 178 (271)
T d1nv8a_ 99 VELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFA 178 (271)
T ss_dssp HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTT
T ss_pred hhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccC
Confidence 344444433334568999999999999998876678999999999999999999874 445677888887663 22237
Q ss_pred CccEEEEccccc----ccC-----CH----------HHHHH-HHHhcCCCCcEEEEE
Q 043471 349 SFDVIYSRDTIL----HIQ-----DK----------PALFK-SFFKWLKPGGTVLIS 385 (485)
Q Consensus 349 ~fD~i~~~~~~~----~~~-----~~----------~~~l~-~~~~~LkpgG~l~i~ 385 (485)
+||+|+|+.... ..+ ++ -.+++ -+.+.|+|||++++.
T Consensus 179 ~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 179 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred cccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 899999984321 000 11 12232 256789999998887
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.04 E-value=5.7e-10 Score=96.68 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSR 356 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~ 356 (485)
...+--.|.+|||+|||+|.++..++.+...+|+|+|+++.+++.|++++...+.+.++..+|.... +++||+|+++
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~---~~~fD~Vi~n 116 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF---NSRVDIVIMN 116 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh---CCcCcEEEEc
Confidence 3444446889999999999999988877335999999999999999999887777889999998775 4679999998
Q ss_pred cccccc
Q 043471 357 DTILHI 362 (485)
Q Consensus 357 ~~~~~~ 362 (485)
..+...
T Consensus 117 PP~~~~ 122 (201)
T d1wy7a1 117 PPFGSQ 122 (201)
T ss_dssp CCCSSS
T ss_pred Cccccc
Confidence 876544
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.04 E-value=3.8e-10 Score=96.64 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=60.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
.|++|||+|||+|.++..++.....+|+|+|+++.+++.|+++.. +++++++|+.+++ ++||+|+++..+.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~----~~~~~~~D~~~l~---~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEIS---GKYDTWIMNPPFG 118 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGCC---CCEEEEEECCCC-
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc----cccEEEEehhhcC---CcceEEEeCcccc
Confidence 588999999999999988777633589999999999999999875 6899999998764 6799999987653
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=99.02 E-value=4.6e-11 Score=106.49 Aligned_cols=102 Identities=21% Similarity=0.273 Sum_probs=85.1
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFS 117 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~ 117 (485)
.+....+.+++.+...++++|||||||+|.++..|++.+.+|++||+++.+++.++++....++++++.+|+.+.+ ++
T Consensus 13 ~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~--~~ 90 (245)
T d1yuba_ 13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ--FP 90 (245)
T ss_dssp CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT--CC
T ss_pred CCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccc--cc
Confidence 4567778999999999999999999999999999999999999999999999998888776679999999999855 45
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHH
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLA 142 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l 142 (485)
...++.|+++ ..+|++.+-...++
T Consensus 91 ~~~~~~vv~N-LPY~Ist~il~~~l 114 (245)
T d1yuba_ 91 NKQRYKIVGN-IPYHLSTQIIKKVV 114 (245)
T ss_dssp CSSEEEEEEE-CCSSSCHHHHHHHH
T ss_pred cceeeeEeee-eehhhhHHHHHHHh
Confidence 5666667765 46788875444444
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.97 E-value=3.5e-10 Score=104.95 Aligned_cols=117 Identities=17% Similarity=0.100 Sum_probs=84.9
Q ss_pred hHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHc---CC-CCCeEEEEeeccCCC--CC
Q 043471 43 RPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN---GH-FENVKFMCADVTSPD--LT 115 (485)
Q Consensus 43 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~---~~-~~~~~~~~~d~~~~~--~~ 115 (485)
++.+...+ .+|.+|||++||+|.+++.++..|+ +|+++|+|+.+++.++++. +. ..+++++++|+.+.- +.
T Consensus 135 r~~l~~~~--~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~ 212 (317)
T d2b78a2 135 RNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR 212 (317)
T ss_dssp HHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHh--hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHH
Confidence 34555543 3588999999999999999888776 7999999999999999864 22 247999999996520 11
Q ss_pred CCCCCeeEEEhhhh-----hhccC--hHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 FSEDSVDMMFSNWL-----LMYLS--DKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 ~~~~~~D~v~~~~~-----~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
-...+||+|++.=. -.... ...+.++++.+.++|+|||+|+++..+
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 13468999997410 00111 122667899999999999999997654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=1.8e-10 Score=98.42 Aligned_cols=121 Identities=14% Similarity=0.159 Sum_probs=89.4
Q ss_pred cCccChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcC--CCCCeEEEEeecc
Q 043471 35 ASDLDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNG--HFENVKFMCADVT 110 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~ 110 (485)
.++.+...++.+...+.. ..+.+|||++||+|.+++.++.+|+ +|++||.++++++.++++.. ...++.++.+|+.
T Consensus 23 ~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~ 102 (183)
T d2fpoa1 23 LRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAM 102 (183)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred cCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeeccc
Confidence 345566677777776653 4688999999999999999988877 79999999999999988643 2357899999987
Q ss_pred CCCCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEe
Q 043471 111 SPDLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRE 159 (485)
Q Consensus 111 ~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~ 159 (485)
+. +.....+||+|++.= .+.... .+..+..+.+ +|+|+|.+++..
T Consensus 103 ~~-l~~~~~~fDlIf~DP-PY~~~~--~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 103 SF-LAQKGTPHNIVFVDP-PFRRGL--LEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HH-HSSCCCCEEEEEECC-SSSTTT--HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc-ccccccccCEEEEcC-ccccch--HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 64 233567899999872 222222 5567777665 699999999853
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=9.5e-10 Score=99.04 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=86.7
Q ss_pred HHhccCCCCCCCcEEEEcCCCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCCCCCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
.+++.....+..+|||+|||+|..+..+++. ..+|+|+|+|+++++.|+++... ..++.+..+|+.+. ++...++
T Consensus 101 ~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~-~~~~~~~ 179 (271)
T d1nv8a_ 101 LALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FKEKFAS 179 (271)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GGGGTTT
T ss_pred hhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc-cccccCc
Confidence 3444444445568999999999999888876 56899999999999999987543 23677888887653 2223479
Q ss_pred eeEEEhhhhhhccChHH-----------H--------HHHHHH-HHhhcccCcEEEEEeccCCCCCccccCCCCCCCCCh
Q 043471 121 VDMMFSNWLLMYLSDKE-----------V--------EKLAER-MVKWLKVGGYIFFRESCFHQSGDSKRKHNPTHYREP 180 (485)
Q Consensus 121 ~D~v~~~~~~~~~~~~~-----------~--------~~~l~~-~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (485)
||+|+|| ..+++... . -.++++ +.+.|+|||++++- .... ..
T Consensus 180 fDlIVsN--PPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E-ig~~---------------Q~ 241 (271)
T d1nv8a_ 180 IEMILSN--PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME-IGED---------------QV 241 (271)
T ss_dssp CCEEEEC--CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE-CCTT---------------CH
T ss_pred ccEEEEc--ccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE-ECHH---------------HH
Confidence 9999998 22222110 0 022323 45789999998883 2211 34
Q ss_pred hHHHHHhhhcce
Q 043471 181 RFYSKVFKECQI 192 (485)
Q Consensus 181 ~~~~~~~~~~~~ 192 (485)
+.+.+++++.||
T Consensus 242 ~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 242 EELKKIVSDTVF 253 (271)
T ss_dssp HHHTTTSTTCEE
T ss_pred HHHHHHHHhCCE
Confidence 556667777776
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.95 E-value=7.5e-10 Score=96.80 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=83.9
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC---
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK--- 343 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~--- 343 (485)
.+..++... ...+|||||||+|..+..+++.+ +.+++++|+++.+.+.|++++. ++..++++..+|..+.
T Consensus 47 lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~ 123 (214)
T d2cl5a1 47 IMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ 123 (214)
T ss_dssp HHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred HHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence 334444443 34599999999999999999875 5799999999999999998875 5667899999998653
Q ss_pred ---CCCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 344 ---TYPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 344 ---~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+..++||+|+.-..-.. ......+.+..++|||||.+++-+..
T Consensus 124 l~~~~~~~~~D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddvl 170 (214)
T d2cl5a1 124 LKKKYDVDTLDMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNVI 170 (214)
T ss_dssp HHHHSCCCCEEEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred hhhcccccccceeeecccccc-cccHHHHHHHhCccCCCcEEEEeCcC
Confidence 134578999998532111 11223467788999999987776543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.5e-10 Score=101.37 Aligned_cols=115 Identities=14% Similarity=0.145 Sum_probs=87.4
Q ss_pred hHHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeeccCCC--
Q 043471 43 RPEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVN---GHFENVKFMCADVTSPD-- 113 (485)
Q Consensus 43 ~~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~~~~~-- 113 (485)
.-+++..+ ...+.++|||||||+|..+..+++. +.+|+.+|.+++..+.|++.. +...+++++.+|+.+.-
T Consensus 47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~ 126 (219)
T d2avda1 47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE 126 (219)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence 34444444 3456789999999999999999986 679999999999999999875 33457999999975420
Q ss_pred --CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccC
Q 043471 114 --LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCF 162 (485)
Q Consensus 114 --~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 162 (485)
.....++||+|+... .......+++.+.+.|+|||.+++....+
T Consensus 127 ~~~~~~~~~fD~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 127 LLAAGEAGTFDVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHTTCTTCEEEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred hhhhcccCCccEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 012357899999853 12226788999999999999999965544
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.94 E-value=1.9e-10 Score=100.67 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=79.8
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCC--C--CCCC
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPD--L--TFSE 118 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~--~--~~~~ 118 (485)
.+...++.+|||||||+|..++.+++. +.+|+++|+++++++.|++... ...+++++.+|..+.- + .+..
T Consensus 51 lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~ 130 (214)
T d2cl5a1 51 VIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDV 130 (214)
T ss_dssp HHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCC
T ss_pred HHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccc
Confidence 334456779999999999999999975 6799999999999999987643 3347999999987531 1 1345
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++||+|+.-.. | ........+.+..++|+|||+|++.+.
T Consensus 131 ~~~D~ifiD~~--~-~~~~~~~~l~~~~~lLkpGGvIv~Ddv 169 (214)
T d2cl5a1 131 DTLDMVFLDHW--K-DRYLPDTLLLEKCGLLRKGTVLLADNV 169 (214)
T ss_dssp CCEEEEEECSC--G-GGHHHHHHHHHHTTCEEEEEEEEESCC
T ss_pred cccceeeeccc--c-cccccHHHHHHHhCccCCCcEEEEeCc
Confidence 68999997531 1 111122357778899999998877544
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.94 E-value=7.4e-10 Score=94.27 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=92.9
Q ss_pred CcCccChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHc---CCCCCeEEEEee
Q 043471 34 KASDLDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVN---GHFENVKFMCAD 108 (485)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d 108 (485)
...+.+...++.+...+.. .++.+|||++||+|.+++..+.+|+ +|+++|.++.+++.++++. +...+++++++|
T Consensus 20 ~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D 99 (182)
T d2fhpa1 20 NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMD 99 (182)
T ss_dssp SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESC
T ss_pred CcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccccc
Confidence 4566666788888888764 4789999999999999999999987 6999999999999998864 333479999999
Q ss_pred ccCCC--CCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEe
Q 043471 109 VTSPD--LTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRE 159 (485)
Q Consensus 109 ~~~~~--~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~ 159 (485)
+...- +.-...+||+|++.= .+.... ....+..+.+ +|+|+|++++..
T Consensus 100 ~~~~l~~~~~~~~~fDlIflDP-PY~~~~--~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 100 ANRALEQFYEEKLQFDLVLLDP-PYAKQE--IVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEEECC-CGGGCC--HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhhhhhhcccCCCcceEEech-hhhhhH--HHHHHHHHHHCCCCCCCEEEEEEc
Confidence 86521 111345899999752 222333 5577787764 799999998853
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.94 E-value=4.3e-10 Score=104.37 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=83.0
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCC----CCCCCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKK----TYPENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~----~~~~~~fD~i 353 (485)
..+|.+|||++||+|.++..++......|+++|+|+.+++.|++++. ++. .+++++.+|+.+. .-...+||+|
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 45688999999999999998876522389999999999999999975 443 4789999998543 1234689999
Q ss_pred EEccccc---------ccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 354 YSRDTIL---------HIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 354 ~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++...-. ...+..++++.+.++|+|||.++++..
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9853311 112466788999999999999999853
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.92 E-value=6.3e-10 Score=101.76 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=81.2
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCC-CCeEEEEccCCCC----CCCCCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLK-CSVEFEVADCTKK----TYPENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~-~~i~~~~~d~~~~----~~~~~~fD~i 353 (485)
..++.+|||++||+|.++..++.. |++|++||.|+.+++.|++++. ++. .+++++++|+.+. .....+||+|
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I 208 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII 208 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence 346789999999999999999876 7899999999999999999876 444 3689999998653 1224789999
Q ss_pred EEccc-c--------ccc-CCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 354 YSRDT-I--------LHI-QDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 354 ~~~~~-~--------~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++... + ..+ .+...+++.+.++|+|||.+++...
T Consensus 209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 98532 1 111 2345667788899999998776643
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.91 E-value=3.9e-10 Score=103.17 Aligned_cols=109 Identities=11% Similarity=-0.003 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC---CC-CCeEEEEeeccCCC--CCCCCCCeeEEE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG---HF-ENVKFMCADVTSPD--LTFSEDSVDMMF 125 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~---~~-~~~~~~~~d~~~~~--~~~~~~~~D~v~ 125 (485)
..++.+|||++||+|.+++.++..|++|++||.|+.+++.|+++.. .. .+++|+++|+.+.- .......||+|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 3468899999999999999999999999999999999999998642 22 36999999997531 111246899999
Q ss_pred hhh---hh----hccC-hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 126 SNW---LL----MYLS-DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 126 ~~~---~~----~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+.= .. .... .......+..+.++|+|||.+++...
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 741 00 0111 12245677778899999997666544
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.7e-09 Score=93.30 Aligned_cols=104 Identities=16% Similarity=0.223 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC------CCCCCCccE
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK------TYPENSFDV 352 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~------~~~~~~fD~ 352 (485)
..++|||||||+|..+.++++.. +.+++++|+++...+.|++++. +...++++..+|+.+. ....++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 35599999999999999999876 5799999999999999999885 6667899999987542 123578999
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
|+... .-.+....++.+.++|+|||.+++-+...
T Consensus 139 ifiD~---dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 139 AVVDA---DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEECS---CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred EEEeC---CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 99853 22467788999999999999999986543
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=9.3e-09 Score=91.96 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=58.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC---CCCCeEEEEeeccCCCC----CCCCCCeeEE
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG---HFENVKFMCADVTSPDL----TFSEDSVDMM 124 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~---~~~~~~~~~~d~~~~~~----~~~~~~~D~v 124 (485)
+..++||+|||+|.++..|+.+ +.+|+|+|+|+++++.|++... ...++.++..+....-. ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 3468999999999999999887 7899999999999999998743 23468888766544211 1235689999
Q ss_pred Ehh
Q 043471 125 FSN 127 (485)
Q Consensus 125 ~~~ 127 (485)
+|+
T Consensus 141 vsN 143 (250)
T d2h00a1 141 MCN 143 (250)
T ss_dssp EEC
T ss_pred Eec
Confidence 998
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.88 E-value=3.9e-09 Score=89.71 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=91.2
Q ss_pred CCchHHHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCC
Q 043471 266 TGGIETTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTK 342 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~ 342 (485)
+.....-+.++..+. ...+.+|||++||+|.++...+.+....|+++|.++.+++.+++++. +...++++.++|+.+
T Consensus 23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~ 102 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR 102 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence 333344455666664 34688999999999999999998843489999999999999999986 344578999999765
Q ss_pred C----CCCCCCccEEEEcccccccCCHHHHHHHHHh--cCCCCcEEEEEe
Q 043471 343 K----TYPENSFDVIYSRDTILHIQDKPALFKSFFK--WLKPGGTVLISD 386 (485)
Q Consensus 343 ~----~~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~ 386 (485)
. .-...+||+|++...+ ...+....+..+.. +|+|||.+++..
T Consensus 103 ~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 103 ALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 2 1134689999997764 33567778888754 699999988864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.86 E-value=5.8e-09 Score=92.13 Aligned_cols=87 Identities=11% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..++++++.+.+.++++|||||||+|.++..+++. +.+|+++|+++.+++.++++..+. .+++++++|+.+.+++...
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~-~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc-cchhhhhhhhhhccccccc
Confidence 46778899999999999999999999999999987 679999999999999999987654 4899999999998776554
Q ss_pred ccEEEEccc
Q 043471 350 FDVIYSRDT 358 (485)
Q Consensus 350 fD~i~~~~~ 358 (485)
...|+++-.
T Consensus 86 ~~~vv~NLP 94 (235)
T d1qama_ 86 SYKIFGNIP 94 (235)
T ss_dssp CCEEEEECC
T ss_pred cceeeeeeh
Confidence 445665543
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=3.6e-09 Score=90.17 Aligned_cols=104 Identities=9% Similarity=0.110 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCC-CCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKK-TYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~-~~~~~~fD~i~~~~~~~ 360 (485)
.+.+|||++||+|.++...+.+...+|+.||.++.+++.+++++.... .++.++..|+... .....+||+|++.....
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 567999999999999999888843489999999999999999887433 4788888887553 33467899999987654
Q ss_pred ccCCHHHHHHHHHh--cCCCCcEEEEEec
Q 043471 361 HIQDKPALFKSFFK--WLKPGGTVLISDY 387 (485)
Q Consensus 361 ~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 387 (485)
......++..+.+ .|+|+|.+++...
T Consensus 123 -~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 123 -RGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp -TTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -cchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 3456777777765 6999999998743
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.76 E-value=7.9e-10 Score=98.31 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~ 349 (485)
..++++++.+.+.++++|||||||+|.++..|++. +.+|+++|+++.+++.++++.... .+++++++|+.+.+++...
T Consensus 16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~~~~~~~ 93 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQFQFPNKQ 93 (245)
T ss_dssp TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTTTCCCSS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhhhc-cchhhhhhhhhccccccce
Confidence 45778999999999999999999999999999988 679999999999999888776543 4899999999999888777
Q ss_pred ccEEEEcccccccC
Q 043471 350 FDVIYSRDTILHIQ 363 (485)
Q Consensus 350 fD~i~~~~~~~~~~ 363 (485)
++.|+++-.. |+.
T Consensus 94 ~~~vv~NLPY-~Is 106 (245)
T d1yuba_ 94 RYKIVGNIPY-HLS 106 (245)
T ss_dssp EEEEEEECCS-SSC
T ss_pred eeeEeeeeeh-hhh
Confidence 7777776654 553
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.75 E-value=1.3e-08 Score=95.53 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=82.8
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC------CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEE
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF------DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVI 353 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i 353 (485)
..+++.+|||.|||+|.++..+.++. ..+++|+|+++.+++.|+.+..-......+.++|..... +..+||+|
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~fD~v 192 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL-LVDPVDVV 192 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC-CCCCEEEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc-cccccccc
Confidence 56677899999999999998886532 248999999999999998877644456777777765543 45789999
Q ss_pred EEcccccccCC------------------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 354 YSRDTILHIQD------------------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 354 ~~~~~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+++..+..... ...++..+.+.|+|||++++..+.
T Consensus 193 i~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~ 245 (328)
T d2f8la1 193 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 245 (328)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence 99977643211 223689999999999998877543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.72 E-value=2e-09 Score=94.46 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=85.7
Q ss_pred HHHhccC-CCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC-
Q 043471 44 PEVLSLL-PPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT- 115 (485)
Q Consensus 44 ~~~~~~~-~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~- 115 (485)
-+++..+ ...+..+|||||+++|..+..+++. +.+|+.+|.+++..+.|++.... .++++++.+++.+. ++
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~-L~~ 126 (227)
T d1susa1 48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV-LDE 126 (227)
T ss_dssp HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH-HHH
T ss_pred HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH-HHH
Confidence 3444443 3456779999999999999999975 67999999999999999987543 34799999998653 11
Q ss_pred -----CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 116 -----FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 116 -----~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
...++||+|+.-. .......+++.+.+.|+|||.+++....
T Consensus 127 l~~~~~~~~~fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 127 MIKDEKNHGSYDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp HHHCGGGTTCBSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HHhccccCCceeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 1246899999863 1122678999999999999999886443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.68 E-value=1.9e-08 Score=88.16 Aligned_cols=103 Identities=15% Similarity=0.242 Sum_probs=84.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhc--CCCCCeEEEEccCCCC-C------CCCCCcc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAI--GLKCSVEFEVADCTKK-T------YPENSFD 351 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~--~~~~~i~~~~~d~~~~-~------~~~~~fD 351 (485)
...+|||||+++|..+..+++.. +.+++.+|.++...+.|++++. +...+++++.+++.+. + ...++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 34599999999999999999866 5799999999999999999886 5556899999988553 1 1246899
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|+.-. .-......++.+.++|+|||.+++-+..
T Consensus 139 ~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 139 FIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp EEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred EEEecc---chhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 999953 2246788999999999999999888653
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.8e-07 Score=84.07 Aligned_cols=92 Identities=22% Similarity=0.257 Sum_probs=76.1
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCCCCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSPDLT 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~ 115 (485)
++...+.+++.+...+++.|||||||+|.++..|++++.+|+++|+.+.+++..++..... ++++++.+|+.+.+++
T Consensus 6 d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 6 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred CHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 4567788888888888999999999999999999999999999999999999999876542 4899999999886543
Q ss_pred CCCCCeeEEEhhhhhhccCh
Q 043471 116 FSEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~ 135 (485)
.++.|+++ ..++++.
T Consensus 86 ----~~~~vV~N-LPY~Iss 100 (278)
T d1zq9a1 86 ----FFDTCVAN-LPYQISS 100 (278)
T ss_dssp ----CCSEEEEE-CCGGGHH
T ss_pred ----hhhhhhcc-hHHHHHH
Confidence 34667766 3566655
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=8.1e-08 Score=80.87 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=88.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC---CCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL---TFSEDS 120 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~---~~~~~~ 120 (485)
+++++.+.+.+|..++|..||.|.++..+.+++.+|+|+|..++++..|++... +++.+++.+..++.. ....+.
T Consensus 8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~--~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHL--PGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--TTEEEEESCGGGHHHHHHHTTCSC
T ss_pred HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccc--cceeEeehHHHHHHHHHHHcCCCc
Confidence 466777888999999999999999999999998899999999999999988643 689999998776421 123467
Q ss_pred eeEEEhhh--hhhccCh-----HHHHHHHHHHHhhcccCcEEEEEec
Q 043471 121 VDMMFSNW--LLMYLSD-----KEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 121 ~D~v~~~~--~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|.|+.-. +.+++.+ ......|....+.|+|||.+++...
T Consensus 86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 99888532 1222211 1245678888999999999988643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.56 E-value=4.1e-08 Score=88.95 Aligned_cols=107 Identities=18% Similarity=0.164 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc-CcEEEEeCChHHHHHHHHHcC------------CCCCeEEEEeeccCCCCCCCC
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA-GHVIALDFIDSVIKKNEEVNG------------HFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD~s~~~~~~a~~~~~------------~~~~~~~~~~d~~~~~~~~~~ 118 (485)
..++.+||-||+|.|..+..+.+.. .+|+.+|+++++++.|++... ..++++++.+|+... + -.+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~-l-~~~ 147 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEF-I-KNN 147 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHH-H-HHC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHH-H-hcc
Confidence 4567899999999999999888763 489999999999999998653 236899999998763 1 235
Q ss_pred CCeeEEEhhhhhhccChHH--HHHHHHHHHhhcccCcEEEEEec
Q 043471 119 DSVDMMFSNWLLMYLSDKE--VEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++||+|++-..-..-+... -.++++.+++.|+|||.++....
T Consensus 148 ~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~ 191 (276)
T d1mjfa_ 148 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 191 (276)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence 7899999643211111110 24799999999999999988543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=2.9e-07 Score=79.02 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~ 360 (485)
++.+|+|+|||.|.-+..+|-.. +.+++.+|.+..-+...++....++ .++++++..+++.. +..+||+|++..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP-SEPPFDGVISRAF-- 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSCS--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc-cccccceehhhhh--
Confidence 45699999999999998888654 6899999999999988888776655 38999999998875 3568999999764
Q ss_pred ccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 361 HIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 361 ~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.....+++-+...+++||.+++.-
T Consensus 142 --~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 142 --ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp --SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred --cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 468889999999999999998873
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=4.1e-08 Score=90.33 Aligned_cols=107 Identities=16% Similarity=0.143 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC-------CCCCeEEEEeeccCCCCCCCCCCee
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG-------HFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
.+.+.+||.||.|.|..+..+.+. ..+|+++|++++.++.|++... ..++++++.+|+... +.-.+++||
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~-l~~~~~~yD 153 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY-LERTEERYD 153 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH-HHHCCCCEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHH-hhhcCCccc
Confidence 456789999999999999998876 4589999999999999998742 236899999999764 222356899
Q ss_pred EEEhhhhhhcc---ChHH--HHHHHHHHHhhcccCcEEEEEe
Q 043471 123 MMFSNWLLMYL---SDKE--VEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 123 ~v~~~~~~~~~---~~~~--~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
+|++-..=.+. +... -.++++.+++.|+|||.++...
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 99954321111 0000 2479999999999999998854
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=9.1e-08 Score=80.57 Aligned_cols=113 Identities=16% Similarity=0.220 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----C
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-----Y 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-----~ 345 (485)
++.++++.+.+.+|..++|..||.|+.+..+.++ +.+|+|+|..+.+++.|++.. ..++.+++.++.++. +
T Consensus 6 ll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~---~~~~~~~~~~f~~~~~~l~~~ 81 (182)
T d1wg8a2 6 LYQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH---LPGLTVVQGNFRHLKRHLAAL 81 (182)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC---CTTEEEEESCGGGHHHHHHHT
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc---ccceeEeehHHHHHHHHHHHc
Confidence 4667888888999999999999999999999988 679999999999999998753 347899998876642 3
Q ss_pred CCCCccEEEEccccc--ccC-------CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTIL--HIQ-------DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~--~~~-------~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..+.+|.|+.-..+. +++ .....|......|+|||++++..+
T Consensus 82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 356799998854332 221 244568888899999999998854
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=3.3e-08 Score=87.93 Aligned_cols=95 Identities=14% Similarity=0.231 Sum_probs=75.4
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC--
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF-- 116 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~-- 116 (485)
++...+.+++.+...+++.|||||||+|.++..|++++.+|+++|+++.+++..+++....++++++.+|+.+++++.
T Consensus 6 d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred CHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 456677888888888899999999999999999999999999999999999999887665579999999998865421
Q ss_pred --CCCCeeEEEhhhhhhccCh
Q 043471 117 --SEDSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 117 --~~~~~D~v~~~~~~~~~~~ 135 (485)
..+++ .|+++ ..++++.
T Consensus 86 ~~~~~~~-~vvgN-lPY~Iss 104 (252)
T d1qyra_ 86 EKMGQPL-RVFGN-LPYNIST 104 (252)
T ss_dssp HHHTSCE-EEEEE-CCTTTHH
T ss_pred cccCCCe-EEEec-chHHHHH
Confidence 01222 34444 5666665
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.55 E-value=5.6e-08 Score=88.01 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=79.9
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC-----------CCCCeEEEEccCCCCCCCCCC
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG-----------LKCSVEFEVADCTKKTYPENS 349 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~-----------~~~~i~~~~~d~~~~~~~~~~ 349 (485)
.+...+||-||+|.|..+..+.+....+++.+|+++.+++.|++.+.- ...+++++.+|+...--.+++
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 344579999999999999988875445899999999999999986631 235789999987543223578
Q ss_pred ccEEEEcccccccC-----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHIQ-----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
||+|++-.. .... -..++++.+++.|+|||.+++..
T Consensus 150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 999997432 2111 13578999999999999998764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.53 E-value=1.3e-07 Score=89.71 Aligned_cols=109 Identities=17% Similarity=0.305 Sum_probs=82.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHc--CCCCCeEEEEeeccCCC--CCCCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVN--GHFENVKFMCADVTSPD--LTFSED 119 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~--~~~~~~~~~~~d~~~~~--~~~~~~ 119 (485)
+.+++.+...++.+|||+-||+|.+++.|++++.+|+|+|.++++++.|++.. ....|+.|+.++..+.- ......
T Consensus 202 ~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~ 281 (358)
T d1uwva2 202 ARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKN 281 (358)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTT
T ss_pred HHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhc
Confidence 44556677778899999999999999999999999999999999999998863 34569999999987642 222356
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++|+|+.. ...-+ ..+.++.+.+. +|.-+++++
T Consensus 282 ~~d~vilD--PPR~G---~~~~~~~l~~~-~~~~ivYVS 314 (358)
T d1uwva2 282 GFDKVLLD--PARAG---AAGVMQQIIKL-EPIRIVYVS 314 (358)
T ss_dssp CCSEEEEC--CCTTC---CHHHHHHHHHH-CCSEEEEEE
T ss_pred cCceEEeC--CCCcc---HHHHHHHHHHc-CCCEEEEEe
Confidence 79999874 11111 22456666653 777788886
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.50 E-value=1e-07 Score=83.88 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~ 347 (485)
..++.+++.+..+++.+|||.|||+|.++..+.++. ...++|+|+++..+..+ ......++|..... +.
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~--------~~~~~~~~~~~~~~-~~ 76 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------PWAEGILADFLLWE-PG 76 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC--------TTEEEEESCGGGCC-CS
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc--------ccceeeeeehhccc-cc
Confidence 455667888888889999999999999998887754 46899999998765332 24566777776654 35
Q ss_pred CCccEEEEcccccccC----------------------------C-HHHHHHHHHhcCCCCcEEEEEec
Q 043471 348 NSFDVIYSRDTILHIQ----------------------------D-KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~----------------------------~-~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
..||+|+++..+.... + ...++..+.+.|+|||++++..+
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 7899999986653321 0 23567888999999999988754
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.49 E-value=5.5e-08 Score=82.63 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=86.5
Q ss_pred cCccChhhhHHHhccCCC-CCCCcEEEEcCCCCcchHHHHhhcC-cEEEEeCChHHHHHHHHHcCC----CCCeEEEEee
Q 043471 35 ASDLDKEERPEVLSLLPP-YEGKTVLEFGAGIGRFTGELAKKAG-HVIALDFIDSVIKKNEEVNGH----FENVKFMCAD 108 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~~~~a~~~~~~----~~~~~~~~~d 108 (485)
.++.+...++.+...+.. ..+.+|||+.||||.+++..+.+|+ +|+.||.+..+++..+++... .....+...|
T Consensus 23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d 102 (183)
T d2ifta1 23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS 102 (183)
T ss_dssp -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence 455566677777777753 4678999999999999999999987 899999999999988876432 1246667766
Q ss_pred ccCC-CCCCCCCCeeEEEhhhhhhccChHHHHHHHHHHHh--hcccCcEEEEEec
Q 043471 109 VTSP-DLTFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVK--WLKVGGYIFFRES 160 (485)
Q Consensus 109 ~~~~-~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~ 160 (485)
+.+. .......+||+|++- ..+.... ....+..+.. +|+++|++++...
T Consensus 103 ~~~~l~~~~~~~~fDlIFlD-PPY~~~~--~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 103 SLDFLKQPQNQPHFDVVFLD-PPFHFNL--AEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHHHTTSCCSSCCEEEEEEC-CCSSSCH--HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccccCCcccEEEec-hhHhhhh--HHHHHHHHHHhCCcCCCcEEEEEec
Confidence 5432 122335679999875 2333333 5677777765 7999999998543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=1.1e-07 Score=87.41 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=79.8
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC------CCCCeEEEEccCCCC-CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG------LKCSVEFEVADCTKK-TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~------~~~~i~~~~~d~~~~-~~~~~~fD~i 353 (485)
+..++||.||.|.|..+..+++.. ..+++++|+++.+++.|++.+.. ...+++++.+|+... .-.+++||+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 345699999999999999988765 45999999999999999988641 235899999998663 1234689999
Q ss_pred EEccc--ccc--cC---CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDT--ILH--IQ---DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~--~~~--~~---~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++-.. ... .. -..++++.+++.|+|||.+++..
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 96431 110 00 13578999999999999998763
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=1.8e-06 Score=81.48 Aligned_cols=111 Identities=22% Similarity=0.316 Sum_probs=83.8
Q ss_pred HHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCC----C
Q 043471 271 TTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKT----Y 345 (485)
Q Consensus 271 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~----~ 345 (485)
....+++.+...++.+|||+-||+|.++..|+++ ..+|+|+|.++.+++.|++++...+ .+++++.++..+.. .
T Consensus 200 l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 200 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 4455666677888899999999999999999987 5699999999999999999876333 48999999887642 2
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
...++|+|+....=.- ..++++.+.+ ++|.-.++++.
T Consensus 279 ~~~~~d~vilDPPR~G---~~~~~~~l~~-~~~~~ivYVSC 315 (358)
T d1uwva2 279 AKNGFDKVLLDPARAG---AAGVMQQIIK-LEPIRIVYVSC 315 (358)
T ss_dssp GTTCCSEEEECCCTTC---CHHHHHHHHH-HCCSEEEEEES
T ss_pred hhccCceEEeCCCCcc---HHHHHHHHHH-cCCCEEEEEeC
Confidence 2467899988532211 2346666666 37777888873
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.44 E-value=1.4e-07 Score=83.00 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=80.2
Q ss_pred hhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCC
Q 043471 40 KEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTF 116 (485)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~ 116 (485)
....+.+++.+...++.+|||.|||+|.+...+.++ ..+++|+|+++.++..+ ....++++|....+
T Consensus 5 ~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~-------~~~~~~~~~~~~~~--- 74 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE--- 74 (223)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC---
T ss_pred HHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc-------ccceeeeeehhccc---
Confidence 345667888888888999999999999998888765 45799999998765332 34577888876533
Q ss_pred CCCCeeEEEhhhhhhccC----------hH-----------------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 117 SEDSVDMMFSNWLLMYLS----------DK-----------------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~----------~~-----------------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
....||+|+++-.+.... .. -...++..+.+.|+|||++++-.+
T Consensus 75 ~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 75 PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 357899999874332110 00 123567889999999999888644
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.44 E-value=1.4e-07 Score=85.67 Aligned_cols=105 Identities=17% Similarity=0.089 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
.+.+.+||-||.|.|..+..+.+. ..+|+++|+++++++.|++... ..++++++.+|+... +.-.+++||+
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~-l~~~~~~yDv 165 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEY-VRKFKNEFDV 165 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-GGGCSSCEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHH-HhcCCCCCCE
Confidence 355789999999999999999886 3589999999999999998642 236899999999764 2234578999
Q ss_pred EEhhhhh------hccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 124 MFSNWLL------MYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 124 v~~~~~~------~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|++-..- .++- -.++++.+++.|+|||.++....
T Consensus 166 Ii~D~~dp~~~~~~~L~---t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 166 IIIDSTDPTAGQGGHLF---TEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEEC----------CC---SHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCCCCcCchhhhc---cHHHHHHHHhhcCCCcEEEEecC
Confidence 9964321 1221 24799999999999999988643
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.42 E-value=4.9e-07 Score=76.53 Aligned_cols=104 Identities=16% Similarity=0.190 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCC---CCeEEEEccCCC---CCCCCCCccEEEEc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLK---CSVEFEVADCTK---KTYPENSFDVIYSR 356 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~---~~i~~~~~d~~~---~~~~~~~fD~i~~~ 356 (485)
.+.+|||+.||||.++...+.+....|+.||.++.+++..++++..++ ....+...|..+ ......+||+|++-
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 567999999999999999999943499999999999999999987443 235555555322 22334679999997
Q ss_pred ccccccCCHHHHHHHHHh--cCCCCcEEEEEec
Q 043471 357 DTILHIQDKPALFKSFFK--WLKPGGTVLISDY 387 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 387 (485)
..... .....++..+.. +|+++|.+++...
T Consensus 123 PPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 123 PPFHF-NLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp CCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 76543 446677777754 7999999998753
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=3.2e-07 Score=78.71 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
++.+|+|||+|.|.-++.+|=. ..+|+.+|.+..-+...+..... ..|++++...+++.. .+.+||+|+|..+
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~---~~~~fD~V~sRA~ 141 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP---SEPPFDGVISRAF 141 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC---CCSCEEEEECSCS
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc---cccccceehhhhh
Confidence 4569999999999999988865 56899999999887776664332 358999999998743 4568999998653
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+ ...++.-+...+++||.+++.
T Consensus 142 ----~~--~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 142 ----AS--LNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SS--HHHHHHHHTTSEEEEEEEEEE
T ss_pred ----cC--HHHHHHHHHHhcCCCcEEEEE
Confidence 33 557888899999999998885
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=3.9e-07 Score=82.68 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCee
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
..+.+.+||=||-|.|.....+.+. . .+|+++|++++.++.|++... ..++++.+.+|....-....+++||
T Consensus 77 ~~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 77 SIPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp TSSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred hCCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence 3456789999999999999999886 3 489999999999999998642 2468999999986532123456899
Q ss_pred EEEhhhh-----hhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWL-----LMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~-----~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+.-.. ..++- -.++++.+++.|+|||.++....
T Consensus 157 vIi~D~~dp~~~~~~L~---t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 157 AVIVDSSDPIGPAKELF---EKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEEECCCCTTSGGGGGG---SHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEEcCCCCCCcchhhC---CHHHHHHHHHhcCCCcEEEEecC
Confidence 9996321 12221 23799999999999999998643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.39 E-value=1.3e-07 Score=88.37 Aligned_cols=107 Identities=19% Similarity=0.268 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh-------cCcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccCCCCCCCCCCee
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK-------AGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
...++.+|||.|||+|.+...+.++ ..+++|+|+++.++..|+..... ..+..+..+|.... .+.++||
T Consensus 114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~---~~~~~fD 190 (328)
T d2f8la1 114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLAN---LLVDPVD 190 (328)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSC---CCCCCEE
T ss_pred CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccc---ccccccc
Confidence 4567789999999999998887653 22799999999999988875432 13567777776542 2457899
Q ss_pred EEEhhhhhhccChH----------------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDK----------------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+++=.+...... ....++..+.+.|+|||++++-.+
T Consensus 191 ~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 191 VVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 99998433221111 122479999999999999877544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=2.6e-07 Score=83.55 Aligned_cols=110 Identities=16% Similarity=0.160 Sum_probs=81.6
Q ss_pred CCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCe
Q 043471 50 LPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSV 121 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~ 121 (485)
+..+.+.+||-||.|.|..+..+.+. ..+|+.+|+.+++++.|++... ..++++++.+|+... +.-..++|
T Consensus 74 ~~~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~-l~~~~~~y 152 (285)
T d2o07a1 74 CSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF-MKQNQDAF 152 (285)
T ss_dssp TTSSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH-HHTCSSCE
T ss_pred hhCcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHH-HhcCCCCC
Confidence 34556789999999999999999886 4599999999999999998652 236999999998764 22235689
Q ss_pred eEEEhhhhhhcc-ChH-HHHHHHHHHHhhcccCcEEEEEec
Q 043471 122 DMMFSNWLLMYL-SDK-EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 122 D~v~~~~~~~~~-~~~-~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|+|++-..-..- +.. --.++++.+++.|+|||.+++...
T Consensus 153 DvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 153 DVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp EEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred CEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 999974321111 100 023689999999999999988644
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=4.5e-07 Score=81.60 Aligned_cols=104 Identities=19% Similarity=0.169 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC------CCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG------HFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
...+.+||-||.|.|..+..+.+. ..+|+.+|+.++.++.|++... ..++++++.+|+... +.-.+++||+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~-l~~~~~~yDv 151 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH-IAKSENQYDV 151 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH-HHTCCSCEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHH-HhhcCCCCCE
Confidence 455789999999999999999886 3589999999999999998752 236899999998653 2223578999
Q ss_pred EEhhhhh-----hccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 124 MFSNWLL-----MYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 124 v~~~~~~-----~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
|+.-..- .++- -+++++.+++.|+|||.++...
T Consensus 152 Ii~D~~~p~~~~~~L~---t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 152 IMVDSTEPVGPAVNLF---TKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EEESCSSCCSCCCCCS---TTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCCCCCCcchhhc---cHHHHHHHHhhcCCCceEEEec
Confidence 9964321 1221 2379999999999999998863
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.3e-06 Score=78.28 Aligned_cols=87 Identities=24% Similarity=0.340 Sum_probs=73.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKTYPE 347 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~~~~ 347 (485)
..+.++++.+.+.++..|||||+|+|.++..|+++ +.+++++++++.+++..++.+... ..+++++.+|+....++
T Consensus 8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP- 85 (278)
T ss_dssp HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-
T ss_pred HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh-
Confidence 56778899999999999999999999999999988 679999999999999999987643 35799999999887654
Q ss_pred CCccEEEEcccc
Q 043471 348 NSFDVIYSRDTI 359 (485)
Q Consensus 348 ~~fD~i~~~~~~ 359 (485)
.++.|+++-..
T Consensus 86 -~~~~vV~NLPY 96 (278)
T d1zq9a1 86 -FFDTCVANLPY 96 (278)
T ss_dssp -CCSEEEEECCG
T ss_pred -hhhhhhcchHH
Confidence 35677776543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.35 E-value=2.9e-07 Score=83.84 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=79.9
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCC------CCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGH------FENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
...+.+||-||.|.|..+..+.+.. .+|+.+|+.+++++.|++.... .++++++.+|+... +.-..++||+
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~-l~~~~~~yDv 182 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF-LKNHKNEFDV 182 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH-HHHCTTCEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHH-HHhCCCCCCE
Confidence 4567899999999999999999863 5899999999999999997542 36899999998764 2224578999
Q ss_pred EEhhhhhhccChH--HHHHHHHHHHhhcccCcEEEEEec
Q 043471 124 MFSNWLLMYLSDK--EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 124 v~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
|++-..-..-+.. --.++++.+++.|+|||.++....
T Consensus 183 II~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 183 IITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp EEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 9974322111111 134789999999999999998643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.30 E-value=1.6e-06 Score=79.60 Aligned_cols=137 Identities=21% Similarity=0.182 Sum_probs=97.2
Q ss_pred HHHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCCCCCccE
Q 043471 276 VAKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYPENSFDV 352 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~~~~fD~ 352 (485)
...+..++|.+|||++||.|.=+..++... ...+++.|+++.-+...++++..++ .++.....|....+.....||.
T Consensus 109 ~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 109 PVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred hhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccE
Confidence 344578899999999999999888887765 4589999999999999888776443 3666677777666555678999
Q ss_pred EEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCC
Q 043471 353 IYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLH 410 (485)
Q Consensus 353 i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (485)
|++- +++..-++ ..++|..+.+.|||||+++-++..-....
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eE----------------- 251 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEE----------------- 251 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGG-----------------
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHh-----------------
Confidence 9983 22211111 44568889999999999888865432211
Q ss_pred CHHHHHHHHHhCCCeEEEE
Q 043471 411 DVKSYGQMLKDAGFVDIIA 429 (485)
Q Consensus 411 ~~~~~~~~l~~aGf~~~~~ 429 (485)
..+.+...|++.+|+.+.+
T Consensus 252 NE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 252 NEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp THHHHHHHHHHSSEEEECC
T ss_pred HHHHHHHHHhcCCCEEeec
Confidence 2345666777777776644
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.28 E-value=6.2e-07 Score=81.25 Aligned_cols=105 Identities=20% Similarity=0.107 Sum_probs=79.5
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcC-----CCCCeEEEEccCCCC-CCCCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIG-----LKCSVEFEVADCTKK-TYPENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~fD~i~ 354 (485)
+...+||-||.|.|..+..+++.. ..+++++|+++.+++.|++.+.. ...+++++.+|+... .-.+++||+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 345699999999999999998865 35899999999999999987641 236899999997553 12346899999
Q ss_pred Ecccccc-cC----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 355 SRDTILH-IQ----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 355 ~~~~~~~-~~----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+-..-.. .+ -..++++.+++.|+|||.+++..
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 7432111 11 24688999999999999998873
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.27 E-value=1.7e-06 Score=72.60 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=78.0
Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC---
Q 043471 271 TTKEFVAKLD-LKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--- 344 (485)
Q Consensus 271 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--- 344 (485)
++.++.++.. ++++.+|||+||++|.++..+.++. ...++++|+.+- .. -.++.+..+|+.+..
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~-i~~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DP-IVGVDFLQGDFRDELVMK 78 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CC-CTTEEEEESCTTSHHHHH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cc-cCCceEeecccccchhhh
Confidence 3455666654 5788999999999999999988865 368999998652 11 237888999987632
Q ss_pred -----CCCCCccEEEEcccccccCC-----------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 -----YPENSFDVIYSRDTILHIQD-----------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 -----~~~~~fD~i~~~~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
....++|+|+|-.+...-.+ ....+.-+.++|++||.+++-.+.
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 23568999999766433211 234567778899999999988543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.25 E-value=1.6e-06 Score=77.94 Aligned_cols=105 Identities=22% Similarity=0.185 Sum_probs=80.9
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc---C--CCCCeEEEEccCCCC-CCCCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI---G--LKCSVEFEVADCTKK-TYPENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~---~--~~~~i~~~~~d~~~~-~~~~~~fD~i~ 354 (485)
+...+||-||.|.|..+..+.+..+ .+++.+|+++.+++.|++.+. + ...+++++.+|+... .-.+++||+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 3456999999999999999997653 599999999999999998763 1 246899999997552 12357899999
Q ss_pred Eccccccc--C--CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 355 SRDTILHI--Q--DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 355 ~~~~~~~~--~--~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.-..-..- . -..++++.+++.|+|||.++...
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 85321110 1 25688999999999999998773
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.25 E-value=1.5e-06 Score=78.63 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhc-----CCCCCeEEEEccCCCC--CCCCCCccEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAI-----GLKCSVEFEVADCTKK--TYPENSFDVI 353 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~-----~~~~~i~~~~~d~~~~--~~~~~~fD~i 353 (485)
+...+||-||.|.|..+..+.+..+ .+++++|+++.+++.|++.+. ....+++++.+|.... ..++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4456999999999999999988654 489999999999999998763 1246899999987543 2235689999
Q ss_pred EEccccccc-C---CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDTILHI-Q---DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~~~~~-~---~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.-..=..- + -..++++.+++.|+|||.+++..
T Consensus 159 i~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 983221000 0 14678999999999999999874
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.24 E-value=4.6e-06 Score=75.52 Aligned_cols=116 Identities=20% Similarity=0.281 Sum_probs=83.4
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC--CCCCCCcc
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK--TYPENSFD 351 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~--~~~~~~fD 351 (485)
.+..+...++.+|||+++|.|+=+..+++.. +..++++|+++.-++..++++..++.+......+.... ....+.||
T Consensus 94 ~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd 173 (284)
T d1sqga2 94 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 173 (284)
T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred cccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhccccccc
Confidence 3445678899999999999999998888764 46899999999999999998876664433333332221 12346799
Q ss_pred EEEEc------ccccccCC----------------HHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 352 VIYSR------DTILHIQD----------------KPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 352 ~i~~~------~~~~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
.|++- +++..-++ ..++|..+.+.|||||+++-++..-.
T Consensus 174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 99983 23322222 44678889999999999988865543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=1.3e-06 Score=78.80 Aligned_cols=106 Identities=19% Similarity=0.137 Sum_probs=79.7
Q ss_pred CCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhc-----CCCCCeEEEEccCCCC-CCCCCCccEE
Q 043471 281 LKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAI-----GLKCSVEFEVADCTKK-TYPENSFDVI 353 (485)
Q Consensus 281 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~-----~~~~~i~~~~~d~~~~-~~~~~~fD~i 353 (485)
.+..++||-||.|.|..+..+.+.. ..+++.+|+++.+++.|++.+. -...+++++.+|+... .-..++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 3455799999999999999998764 4599999999999999998764 1246899999997553 1234689999
Q ss_pred EEccccc-ccC---CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 354 YSRDTIL-HIQ---DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 354 ~~~~~~~-~~~---~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
++-..-- ..+ -..++++.+++.|+|||.+++..
T Consensus 156 i~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 156 ITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 9842110 011 24578999999999999998874
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.19 E-value=1.3e-06 Score=76.24 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCC---CCCCccEEEEc
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTY---PENSFDVIYSR 356 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~---~~~~fD~i~~~ 356 (485)
..+.+|+|||+|.|.-+..++-.. +.+++.+|.+..-+...+.....++ .++.+++..++.... ..++||+|++.
T Consensus 69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEh
Confidence 356799999999999888887644 6799999999988888776655444 378888877765431 23689999998
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEee
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDIIAED 431 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 431 (485)
.+ .....+++-+...+++||.+++.--.. ... ..+...+.++..|++...+..
T Consensus 149 Av----a~l~~ll~~~~~~l~~~g~~i~~KG~~----~~~--------------El~~a~~~~~~~~~~~~~v~~ 201 (239)
T d1xdza_ 149 AV----ARLSVLSELCLPLVKKNGLFVALKAAS----AEE--------------ELNAGKKAITTLGGELENIHS 201 (239)
T ss_dssp CC----SCHHHHHHHHGGGEEEEEEEEEEECC-----CHH--------------HHHHHHHHHHHTTEEEEEEEE
T ss_pred hh----hCHHHHHHHHhhhcccCCEEEEECCCC----hHH--------------HHHHHHHHHHHcCCEEEEEEE
Confidence 64 478899999999999999998873110 000 123445677788888766544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.3e-06 Score=73.34 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=75.6
Q ss_pred HhccCC-CCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------C
Q 043471 46 VLSLLP-PYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------T 115 (485)
Q Consensus 46 ~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------~ 115 (485)
+.+... .+++.+|||+||++|..+.++.++ ...|+|+|+.+ ....+++.++++|+.+... .
T Consensus 13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~---------~~~i~~~~~~~~d~~~~~~~~~~~~~ 83 (180)
T d1ej0a_ 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPIVGVDFLQGDFRDELVMKALLER 83 (180)
T ss_dssp HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCCTTEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc---------ccccCCceEeecccccchhhhhhhhh
Confidence 334433 356789999999999999998876 35799999876 2234689999999876311 1
Q ss_pred CCCCCeeEEEhhhhhhccChH---------HHHHHHHHHHhhcccCcEEEEEec
Q 043471 116 FSEDSVDMMFSNWLLMYLSDK---------EVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
...+.+|+|+|-++..-.... -....+.-+.++|++||.+++.-.
T Consensus 84 ~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 84 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 235689999997665333221 133566677899999999999754
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.18 E-value=9.6e-07 Score=78.24 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=63.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY 345 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~ 345 (485)
..++++++.+.+.++..|||||||+|.++..|+++ +.+|+++|+++.+++..+++... ..+++++.+|+.+..+
T Consensus 8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~-~~~~~ii~~D~l~~~~ 81 (252)
T d1qyra_ 8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL-GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT-GGGEEEECSCGGGCCH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh-ccchhHHhhhhhhhcc
Confidence 46778889998999999999999999999999988 67999999999999998875432 3589999999988653
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.16 E-value=2.7e-06 Score=82.10 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC--------------CCEEEEEeCCHHHHHHHHHHhc--CCC-CC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--------------DVHVVGIDLSINMISFALERAI--GLK-CS 332 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------------~~~v~g~D~s~~~~~~a~~~~~--~~~-~~ 332 (485)
..+..+++.+...++.+|+|.+||+|.++..+.+.. ...+.|+|+++.+...|+-++. +.. ..
T Consensus 149 ~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 149 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 456667777777888999999999999998876643 1359999999999999987754 322 24
Q ss_pred eEEEEccCCCCCCCCCCccEEEEcccccccC-----------------CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 333 VEFEVADCTKKTYPENSFDVIYSRDTILHIQ-----------------DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 333 i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~~-----------------~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
......|....+ +..+||+|+++..+..-. ....++..+.+.|+|||++++..+
T Consensus 229 ~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 229 SPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 556777776543 457899999998774321 023589999999999999888755
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.16 E-value=1.3e-06 Score=79.30 Aligned_cols=105 Identities=18% Similarity=0.122 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCC-----CCCeEEEEccCCCC-CCCCCCccEEE
Q 043471 282 KPGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGL-----KCSVEFEVADCTKK-TYPENSFDVIY 354 (485)
Q Consensus 282 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~-----~~~i~~~~~d~~~~-~~~~~~fD~i~ 354 (485)
+...+||-||.|.|..+..+.+..+ .+++.+|+++.+++.|++.++.. ..+++++.+|+... .-..++||+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 3456999999999999999998654 59999999999999999987531 25788888887553 12357899999
Q ss_pred EcccccccC----CHHHHHHHHHhcCCCCcEEEEEe
Q 043471 355 SRDTILHIQ----DKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 355 ~~~~~~~~~----~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+-..-..-+ -..++++.+++.|+|||.++...
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 843211111 24578999999999999998873
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.15 E-value=1.1e-06 Score=76.87 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=69.8
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh------cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC--CCCCCee
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK------AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT--FSEDSVD 122 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~D 122 (485)
...++.+|||||++.|..+..++.. ..+|+|+|+.+.....+.. ..++++++++|..+.... +....+|
T Consensus 77 ~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~---~~~~I~~i~gDs~~~~~~~~l~~~~~d 153 (232)
T d2bm8a1 77 WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS---DMENITLHQGDCSDLTTFEHLREMAHP 153 (232)
T ss_dssp HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG---GCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred HHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc---cccceeeeecccccHHHHHHHHhcCCC
Confidence 3345779999999999888777642 4689999998755433222 236899999998764321 3345678
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
+|+.-+. |........ + ++.+.|+|||++++.|.
T Consensus 154 lIfID~~--H~~~~v~~~-~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 154 LIFIDNA--HANTFNIMK-W-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp EEEEESS--CSSHHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred EEEEcCC--cchHHHHHH-H-HHhcccCcCCEEEEEcC
Confidence 8876543 444432333 2 35689999999999765
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1.6e-05 Score=72.14 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=79.2
Q ss_pred HHcCCCCCCEEEEECCCCChhHHHHhhcC--CCEEEEEeCCHHHHHHHHHHhcCCC-CCeEEEEccCCCCCCC---CCCc
Q 043471 277 AKLDLKPGQKVLDVGCGIGGGDFYMADKF--DVHVVGIDLSINMISFALERAIGLK-CSVEFEVADCTKKTYP---ENSF 350 (485)
Q Consensus 277 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~g~D~s~~~~~~a~~~~~~~~-~~i~~~~~d~~~~~~~---~~~f 350 (485)
..+...+|.+|||++||.|.-+.++++.. +..++++|+++.-++..++++..++ .++.+...|...+... .+.|
T Consensus 88 ~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~f 167 (293)
T d2b9ea1 88 MLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 167 (293)
T ss_dssp HHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTE
T ss_pred cccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhccccccccee
Confidence 34567889999999999999888888754 4689999999999999999887655 4688888888765422 2579
Q ss_pred cEEEEcc------cccccCC------------------HHHHHHHHHhcCCCCcEEEEEecccC
Q 043471 351 DVIYSRD------TILHIQD------------------KPALFKSFFKWLKPGGTVLISDYCKS 390 (485)
Q Consensus 351 D~i~~~~------~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 390 (485)
|.|++-. ++..-++ ...++..+. .|+|||.++-++....
T Consensus 168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 9999842 1111110 122344444 4799999887765443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.08 E-value=2.4e-06 Score=74.51 Aligned_cols=109 Identities=17% Similarity=0.277 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-----CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-----DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT 344 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~ 344 (485)
....+++..+. +.+|||||++.|..+..+++.+ ..+++|+|+.+.....+.. ...++++..+|..+..
T Consensus 70 ~~~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~----~~~~I~~i~gDs~~~~ 142 (232)
T d2bm8a1 70 AVYHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DMENITLHQGDCSDLT 142 (232)
T ss_dssp HHHHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GCTTEEEEECCSSCSG
T ss_pred HHHHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc----cccceeeeecccccHH
Confidence 34556666653 4499999999998877666422 4699999998765433221 2348999999976542
Q ss_pred ----CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 345 ----YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ----~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+....+|+|+.-.. |+-.....-+ ++..+|+|||++++.|.
T Consensus 143 ~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 143 TFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 23456888776443 3322111223 45689999999999875
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=5e-06 Score=72.48 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=77.0
Q ss_pred cCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcC--CCCCeEEEEeeccCCCC-CCCCCCeeE
Q 043471 49 LLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNG--HFENVKFMCADVTSPDL-TFSEDSVDM 123 (485)
Q Consensus 49 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~--~~~~~~~~~~d~~~~~~-~~~~~~~D~ 123 (485)
.++...+.+++|||+|.|.-++.|+=. ..+|+-+|.+..-+...+.... ...++.++...++.... .-..++||+
T Consensus 65 ~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~ 144 (239)
T d1xdza_ 65 YVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDI 144 (239)
T ss_dssp TSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEE
T ss_pred hhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceE
Confidence 333345679999999999999888754 6689999999987766554322 12588999888875321 112468999
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+|-.+ .. ...++.-+...+++||.+++.
T Consensus 145 v~sRAv----a~--l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 145 VTARAV----AR--LSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EEEECC----SC--HHHHHHHHGGGEEEEEEEEEE
T ss_pred EEEhhh----hC--HHHHHHHHhhhcccCCEEEEE
Confidence 999643 33 567899999999999998884
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.98 E-value=6e-06 Score=74.72 Aligned_cols=126 Identities=14% Similarity=0.191 Sum_probs=83.7
Q ss_pred cChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCC--CeEEEEeeccCCC
Q 043471 38 LDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFE--NVKFMCADVTSPD 113 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~ 113 (485)
.+..........+...++.+|||+++|.|.=+..++..+ ..|+++|+++..+...++++...+ ++.....|....
T Consensus 86 vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~- 164 (284)
T d1sqga2 86 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS- 164 (284)
T ss_dssp ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTH-
T ss_pred eccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccc-
Confidence 333333444556678889999999999999998888763 579999999999888877654322 333333332211
Q ss_pred CCCCCCCeeEEEh----h--hhhhccChH--------------HHHHHHHHHHhhcccCcEEEEEeccCCC
Q 043471 114 LTFSEDSVDMMFS----N--WLLMYLSDK--------------EVEKLAERMVKWLKVGGYIFFRESCFHQ 164 (485)
Q Consensus 114 ~~~~~~~~D~v~~----~--~~~~~~~~~--------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (485)
.....+.||.|++ + +++..-++- ...+.|.++.+.|||||+|+-++.+...
T Consensus 165 ~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~ 235 (284)
T d1sqga2 165 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP 235 (284)
T ss_dssp HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred hhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence 1123468999984 2 333222221 1237788889999999999988776543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.97 E-value=6.6e-06 Score=75.45 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=82.7
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCCCCCC
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTFSEDS 120 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~~~ 120 (485)
....+.+.+|.+|||++||.|.=+..++.. ...+++.|+++..+...+++... ..++.....|... ++..++.
T Consensus 108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~--~~~~~~~ 185 (313)
T d1ixka_ 108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH--IGELNVE 185 (313)
T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGG--GGGGCCC
T ss_pred hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccc--ccccccc
Confidence 334557788999999999999988888765 45799999999999887765432 2467777777665 4445678
Q ss_pred eeEEEh----hh--hhhccC-------hH-------HHHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 121 VDMMFS----NW--LLMYLS-------DK-------EVEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 121 ~D~v~~----~~--~~~~~~-------~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
||.|++ ++ ++..-+ .. ...+.+.++.+.|||||+++-++.+..
T Consensus 186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 999984 32 221111 11 123677889999999999988877654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=97.81 E-value=0.0001 Score=66.23 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 328 (485)
....+.++.+++.. ..+|..|||.=||+|..+.+..+. |-+.+|+|+++..++.|++++..
T Consensus 191 ~kP~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 191 QKPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CCCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHH
Confidence 34456788888877 568999999999999888766655 88999999999999999999863
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.78 E-value=2.1e-05 Score=67.82 Aligned_cols=114 Identities=11% Similarity=0.031 Sum_probs=70.8
Q ss_pred hhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCC--CCC-eEEEEeeccCCCCCC
Q 043471 42 ERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGH--FEN-VKFMCADVTSPDLTF 116 (485)
Q Consensus 42 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~-~~~~~~d~~~~~~~~ 116 (485)
...++.+.....++.+|+|+|||.|..+.+++.+ ...|.|+++--+... ...... ..+ +++...+-- ...
T Consensus 54 Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~~~~~~~~ni~~~~~~~dv---~~l 128 (257)
T d2p41a1 54 KLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPIPMSTYGWNLVRLQSGVDV---FFI 128 (257)
T ss_dssp HHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCCCSTTGGGEEEECSCCT---TTS
T ss_pred HHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCccccccccccccchhhhhH---Hhc
Confidence 3356666666677889999999999999999876 457888888422100 000000 012 344333221 123
Q ss_pred CCCCeeEEEhhhhhhccChH-----HHHHHHHHHHhhcccCcEEEEEecc
Q 043471 117 SEDSVDMMFSNWLLMYLSDK-----EVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
+.+.+|+|+|-.... .+.. ...++++-+.++|+|||.+++...+
T Consensus 129 ~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 129 PPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 467899999975432 2221 1235677788999999999887554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.77 E-value=2.6e-05 Score=67.18 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCC-CeEEEEc-cCCCCCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKC-SVEFEVA-DCTKKTYP 346 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~-~i~~~~~-d~~~~~~~ 346 (485)
.++.++.++..+.++.+|+|+|||.|.++..++.+. ...+.|+++--..-+. ......+.. .+++... |+.. .+
T Consensus 53 ~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~ni~~~~~~~dv~~--l~ 129 (257)
T d2p41a1 53 AKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGWNLVRLQSGVDVFF--IP 129 (257)
T ss_dssp HHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSCCTTT--SC
T ss_pred HHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-CccccccccccccchhhhhHHh--cC
Confidence 466777888888999999999999999999999874 2477888774221000 000001111 2343332 2222 34
Q ss_pred CCCccEEEEcccccccCC-------HHHHHHHHHhcCCCCcEEEEEecc
Q 043471 347 ENSFDVIYSRDTILHIQD-------KPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~-------~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
.+.+|+|+|--+- .-++ ...++.-+.+.|+|||.|++-.+.
T Consensus 130 ~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 130 PERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp CCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred CCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 6889999996542 2222 224567777899999998876543
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.77 E-value=2.1e-05 Score=75.70 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=87.5
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh---------------cCcEEEEeCChHHHHHHHHHc--CC
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK---------------AGHVIALDFIDSVIKKNEEVN--GH 98 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------------~~~v~giD~s~~~~~~a~~~~--~~ 98 (485)
+--+....+.+++.+.+..+.+|+|.+||+|.+...+.+. ...+.|+|+++.+...|+-.. ..
T Consensus 144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g 223 (425)
T d2okca1 144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 223 (425)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence 3445567777888888888899999999999998777653 135999999999999888653 21
Q ss_pred --CCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhccC---------------hHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 99 --FENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYLS---------------DKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 99 --~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
..+.++...|.... .+..+||+|+++=.+..-. ......++..+.+.|+|||.+++-.+
T Consensus 224 ~~~~~~~i~~~d~l~~---~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 224 IGTDRSPIVCEDSLEK---EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSSCCSEEECCTTTS---CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccceeecCchhhh---hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 12566777776542 2457899999974331110 00123599999999999999877544
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=97.71 E-value=0.00015 Score=66.43 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=53.0
Q ss_pred cccCCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcC
Q 043471 263 FVSTGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIG 328 (485)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~ 328 (485)
+..+.....++.+++.. ..+|+.|||.=||+|..+....+. |.+.+|+|++++.++.|++++..
T Consensus 231 hpt~kP~~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 231 HPARFPAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CSSCCCTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred CCCcCchHHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 34445567888888877 568899999999999888766654 89999999999999999998764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=1.7e-05 Score=78.47 Aligned_cols=118 Identities=13% Similarity=0.141 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcC-------------------CCEEEEEeCCHHHHHHHHHHhcCCC
Q 043471 270 ETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKF-------------------DVHVVGIDLSINMISFALERAIGLK 330 (485)
Q Consensus 270 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-------------------~~~v~g~D~s~~~~~~a~~~~~~~~ 330 (485)
..+..+++.+...++.+|+|.+||+|.++....+.. ...++|+|+++.+...|+-++.-.+
T Consensus 151 ~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 151 PLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred chhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 455666777777888999999999999987765532 1268999999999999987764221
Q ss_pred C--C----eEEEEccCCCCC-CCCCCccEEEEcccccccC-------------C-HHHHHHHHHhcCCCCcEEEEEec
Q 043471 331 C--S----VEFEVADCTKKT-YPENSFDVIYSRDTILHIQ-------------D-KPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 331 ~--~----i~~~~~d~~~~~-~~~~~fD~i~~~~~~~~~~-------------~-~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
. + -.+...+....+ ....+||+|+++..+.--. + .-.++..+.+.|+|||++.+..+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEe
Confidence 1 1 122333332211 2346799999987763221 1 23489999999999999888755
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=8.4e-05 Score=67.25 Aligned_cols=117 Identities=13% Similarity=0.106 Sum_probs=77.8
Q ss_pred HhccCCCCCCCcEEEEcCCCCcchHHHHhh---cCcEEEEeCChHHHHHHHHHcCC--CCCeEEEEeeccCCCCCC-CCC
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGRFTGELAKK---AGHVIALDFIDSVIKKNEEVNGH--FENVKFMCADVTSPDLTF-SED 119 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~~~~a~~~~~~--~~~~~~~~~d~~~~~~~~-~~~ 119 (485)
....+.+.+|.+|||++||.|.=+..++.. ...|+++|+++..++..++++.. ..++.+...|........ ..+
T Consensus 86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~ 165 (293)
T d2b9ea1 86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH 165 (293)
T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccc
Confidence 344556788999999999999988888865 46899999999999888876543 357889988887643211 135
Q ss_pred CeeEEEh----hh--hhhccCh------------HH----HHHHHHHHHhhcccCcEEEEEeccCC
Q 043471 120 SVDMMFS----NW--LLMYLSD------------KE----VEKLAERMVKWLKVGGYIFFRESCFH 163 (485)
Q Consensus 120 ~~D~v~~----~~--~~~~~~~------------~~----~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (485)
.||.|++ ++ ++...++ .. ....+..+. .++|||+|+-++.+..
T Consensus 166 ~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 166 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred eeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 7999984 22 2221111 00 123344444 4799999888776654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.60 E-value=5.7e-05 Score=62.48 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHcCCCCCCEEEEECCC-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEc-cCCCC-CCCCCCc
Q 043471 274 EFVAKLDLKPGQKVLDVGCG-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA-DCTKK-TYPENSF 350 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~-d~~~~-~~~~~~f 350 (485)
..+....++++.+||-+|+| .|..+..+++..|++++++|.+++.++.|++.-. . .++.. +-.+. .-..+.|
T Consensus 18 ~al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa----~-~~i~~~~~~~~~~~~~~~~ 92 (168)
T d1piwa2 18 SPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA----D-HYIATLEEGDWGEKYFDTF 92 (168)
T ss_dssp HHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC----S-EEEEGGGTSCHHHHSCSCE
T ss_pred HHHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCC----c-EEeeccchHHHHHhhhccc
Confidence 34556788999999999997 5677778887779999999999999999887521 1 22221 11111 1123579
Q ss_pred cEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 351 DVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 351 D~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|+|+..-.-.+-. .+....+.|+|+|++++...
T Consensus 93 d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 93 DLIVVCASSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEEEECCSCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred ceEEEEecCCccc----hHHHHHHHhhccceEEEecc
Confidence 9988753322211 14567889999999988743
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.51 E-value=4.5e-05 Score=71.30 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCC----------------CCeEEEEccCCCCCC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLK----------------CSVEFEVADCTKKTY 345 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~----------------~~i~~~~~d~~~~~~ 345 (485)
.+.+|||..||+|..+...+...+ ..|++.|+|+.+++.+++++.-.+ ..+.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 466999999999999997766544 489999999999999999875211 124455555433211
Q ss_pred -CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 -PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 -~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
....||+|..-. +..+..++..+.+.++.||.+.++.
T Consensus 125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 235699888754 3467889999999999999999984
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.49 E-value=0.0013 Score=60.32 Aligned_cols=163 Identities=10% Similarity=0.155 Sum_probs=98.6
Q ss_pred CEEEEECCCCChhHHHHhhcC-----------------CCEEEEEeCCHHHHHHHHHHhcCCC---CC--eEEEEccCCC
Q 043471 285 QKVLDVGCGIGGGDFYMADKF-----------------DVHVVGIDLSINMISFALERAIGLK---CS--VEFEVADCTK 342 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~-----------------~~~v~g~D~s~~~~~~a~~~~~~~~---~~--i~~~~~d~~~ 342 (485)
.+|.|+||.+|..+..+.... ..+|..-|...+--...=+.+.... .+ +..+-+.+..
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 579999999998775433211 2466667765444333322222111 11 2233455555
Q ss_pred CCCCCCCccEEEEcccccccCC---------------------------------HHHHHHHHHhcCCCCcEEEEEeccc
Q 043471 343 KTYPENSFDVIYSRDTILHIQD---------------------------------KPALFKSFFKWLKPGGTVLISDYCK 389 (485)
Q Consensus 343 ~~~~~~~fD~i~~~~~~~~~~~---------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~ 389 (485)
--||+++.|+++|..++||+.. ...+|+.=.+=|+|||+++++..+.
T Consensus 133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr 212 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR 212 (359)
T ss_dssp CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 5688999999999999999731 3346776777899999999987665
Q ss_pred CCCCCC--------hh----HHHHHHhc------------CCCCCCHHHHHHHHHhC-CCeEEEEeecc-----------
Q 043471 390 SFGTPS--------VE----FSEYIKQR------------GYDLHDVKSYGQMLKDA-GFVDIIAEDRT----------- 433 (485)
Q Consensus 390 ~~~~~~--------~~----~~~~~~~~------------~~~~~~~~~~~~~l~~a-Gf~~~~~~~~~----------- 433 (485)
....+. .. +.+....+ ....++.+++...+++. .|++..++...
T Consensus 213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~ 292 (359)
T d1m6ex_ 213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGD 292 (359)
T ss_dssp SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTT
T ss_pred CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEeeeccccccccccc
Confidence 432111 11 22222211 12457889999999885 56666554321
Q ss_pred ---------hHHHHHHHHHHHHH
Q 043471 434 ---------EQFVQVLQRELDAI 447 (485)
Q Consensus 434 ---------~~~~~~~~~~~~~~ 447 (485)
..+..+++.|.+.+
T Consensus 293 ~~~d~~~~~~~~a~~~RA~~e~~ 315 (359)
T d1m6ex_ 293 GGGSVEEEGYNVARCMRAVAEPL 315 (359)
T ss_dssp CCSSTTTTTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 24677777777654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.46 E-value=0.00028 Score=58.15 Aligned_cols=104 Identities=17% Similarity=0.192 Sum_probs=72.9
Q ss_pred HHHHHcCCCCCCEEEEECCC-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------
Q 043471 274 EFVAKLDLKPGQKVLDVGCG-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-------- 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-------- 344 (485)
..+++..++++.+||=+||| .|..+..+++..|++|+++|.++.-++.|++.-. ...+.........
T Consensus 17 ~a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga----~~~~~~~~~~~~~~~~~~~~~ 92 (170)
T d1e3ja2 17 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA----DVTLVVDPAKEEESSIIERIR 92 (170)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEECCTTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC----cEEEeccccccccchhhhhhh
Confidence 34566788999999999998 4667777887779999999999999999987532 2222221111110
Q ss_pred -CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 345 -YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 -~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.....+|+|+-.- ..+..+..+.++|+|+|++++...
T Consensus 93 ~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 93 SAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred cccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEec
Confidence 0124588887643 234678889999999999988753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=0.00022 Score=65.35 Aligned_cols=73 Identities=15% Similarity=0.077 Sum_probs=58.9
Q ss_pred cChhhhHHHhccCCC------CCCCcEEEEcCCCCcchHHHHhhc--CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeec
Q 043471 38 LDKEERPEVLSLLPP------YEGKTVLEFGAGIGRFTGELAKKA--GHVIALDFIDSVIKKNEEVNGHFENVKFMCADV 109 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~------~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~ 109 (485)
.++.....+++.+.. .++..|||||+|.|.++..|.+.+ .+|+++|+.+.+++..++.... ++++++.+|+
T Consensus 21 ~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~~~~ii~~D~ 99 (322)
T d1i4wa_ 21 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-SPLQILKRDP 99 (322)
T ss_dssp CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-SSCEEECSCT
T ss_pred CCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-CCcEEEeCch
Confidence 455666777766542 356789999999999999999874 3899999999999999887653 6899999998
Q ss_pred cC
Q 043471 110 TS 111 (485)
Q Consensus 110 ~~ 111 (485)
..
T Consensus 100 l~ 101 (322)
T d1i4wa_ 100 YD 101 (322)
T ss_dssp TC
T ss_pred hh
Confidence 64
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.33 E-value=0.00013 Score=68.08 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=71.3
Q ss_pred CCCcEEEEcCCCCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcC---C--------------CCCeEEEEeeccCCCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNG---H--------------FENVKFMCADVTSPDL 114 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~---~--------------~~~~~~~~~d~~~~~~ 114 (485)
++.+|||..||+|..++..+.. + ..|++.|+|+++++.+++++. . ...+.+.+.|+... +
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~-~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL-M 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH-H
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh-h
Confidence 5779999999999999876654 4 489999999999999988642 1 11355566665432 1
Q ss_pred CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 115 TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 115 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
.-....||+|..-= +-+ ...++..+.+.++.||.|+++.
T Consensus 124 ~~~~~~fDvIDiDP---fGs---~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 124 AERHRYFHFIDLDP---FGS---PMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HHSTTCEEEEEECC---SSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhcCcCCcccCCC---CCC---cHHHHHHHHHHhccCCEEEEEe
Confidence 11235799988751 222 2369999999999999999974
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00057 Score=56.13 Aligned_cols=102 Identities=25% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-CCCCCCcc
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-TYPENSFD 351 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-~~~~~~fD 351 (485)
..++...+++|++||=+|||. |.++..+++..|++++++|.+++-.+.+++.-. . .++...-... ....+.+|
T Consensus 21 ~al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d-~~i~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 21 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----D-EVVNSRNADEMAAHLKSFD 95 (168)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----S-EEEETTCHHHHHTTTTCEE
T ss_pred HHHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----c-EEEECchhhHHHHhcCCCc
Confidence 345677899999999999964 667778888889999999999998888876522 1 1222111110 11235699
Q ss_pred EEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 352 VIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 352 ~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+|+..-.- ...++...+.|+|+|++++..
T Consensus 96 ~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 96 FILNTVAA------PHNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEECCSS------CCCHHHHHTTEEEEEEEEECC
T ss_pred eeeeeeec------chhHHHHHHHHhcCCEEEEec
Confidence 88875322 223577889999999998874
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.26 E-value=0.00085 Score=56.51 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=74.8
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC------
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY------ 345 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~------ 345 (485)
..++...+++|.+||-+|||. |..+..+++..++ +|+++|.++.-++.|++.- ..... +..+.++
T Consensus 16 ~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G------a~~~~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 16 HGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG------FEIAD-LSLDTPLHEQIAA 88 (195)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT------CEEEE-TTSSSCHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc------ccEEE-eCCCcCHHHHHHH
Confidence 346677899999999999987 5566677766554 8999999999999998752 22222 2211111
Q ss_pred --CCCCccEEEEccccc------cc---CCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 346 --PENSFDVIYSRDTIL------HI---QDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 346 --~~~~fD~i~~~~~~~------~~---~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
....+|+++-.-... +. ......++.+.++++|||++.+.-..
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 134589988643321 11 23567899999999999999888543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.24 E-value=0.00041 Score=57.15 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=66.2
Q ss_pred hccCCCCCCCcEEEEcCC-CCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-------C-C
Q 043471 47 LSLLPPYEGKTVLEFGAG-IGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-------T-F 116 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-------~-~ 116 (485)
++....+++.+||-+||| .|..+..+++. |++|+++|.+++.++.|++.-. ... +..+-...+. . .
T Consensus 19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga---~~~-~~~~~~~~~~~~~~~~~~~~ 94 (170)
T d1e3ja2 19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA---DVT-LVVDPAKEEESSIIERIRSA 94 (170)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---SEE-EECCTTTSCHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC---cEE-Eeccccccccchhhhhhhcc
Confidence 455567889999999988 44555556654 8899999999999999988532 122 2222111000 0 0
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..+.+|+|+-.- . -...+..+.++|+|+|.+++.
T Consensus 95 ~g~g~D~vid~~-----g---~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 95 IGDLPNVTIDCS-----G---NEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp SSSCCSEEEECS-----C---CHHHHHHHHHHSCTTCEEEEC
T ss_pred cccCCceeeecC-----C---ChHHHHHHHHHHhcCCceEEE
Confidence 124689887431 1 235788889999999999884
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.0002 Score=59.08 Aligned_cols=101 Identities=20% Similarity=0.128 Sum_probs=64.6
Q ss_pred hccCCCCCCCcEEEEcCC-CCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-CCCCCCeeE
Q 043471 47 LSLLPPYEGKTVLEFGAG-IGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-TFSEDSVDM 123 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG-~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~D~ 123 (485)
++....++|++||-+|+| .|..+..+++. |++|+++|.|++.++.+++.=. -.++... .+.+. ....+.+|+
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa----~~~i~~~-~~~~~~~~~~~~~d~ 94 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA----DHYIATL-EEGDWGEKYFDTFDL 94 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC----SEEEEGG-GTSCHHHHSCSCEEE
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCC----cEEeecc-chHHHHHhhhcccce
Confidence 445677889999999998 55556666654 9999999999999999988521 1222111 11111 112457998
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+....-.+ + ..+....+.|+|+|.+++.
T Consensus 95 vi~~~~~~~--~----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 95 IVVCASSLT--D----IDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp EEECCSCST--T----CCTTTGGGGEEEEEEEEEC
T ss_pred EEEEecCCc--c----chHHHHHHHhhccceEEEe
Confidence 875321111 0 1234578999999999884
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.16 E-value=0.0012 Score=54.85 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=67.8
Q ss_pred HcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----------
Q 043471 278 KLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----------- 344 (485)
Q Consensus 278 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------- 344 (485)
...+++|.+||-+|||. |..+..+++..|+ +|+++|.++..++.+++.-. . .++ |..+..
T Consensus 23 ~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~-~vi--~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 23 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----D-LTL--NRRETSVEERRKAIMDI 95 (182)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----S-EEE--ETTTSCHHHHHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc----e-EEE--eccccchHHHHHHHHHh
Confidence 34678999999999974 6777788888887 89999999999999976421 1 112 121111
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
.....+|+|+..-.- +..++...+.|+|||++++...
T Consensus 96 ~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 96 THGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp TTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 113458998864321 3457888999999999987743
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=9.6e-05 Score=72.84 Aligned_cols=123 Identities=14% Similarity=0.065 Sum_probs=80.9
Q ss_pred CccChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhh--------------------cCcEEEEeCChHHHHHHHHH
Q 043471 36 SDLDKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKK--------------------AGHVIALDFIDSVIKKNEEV 95 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------------------~~~v~giD~s~~~~~~a~~~ 95 (485)
+--+....+.|.+.+.+.++.+|+|-+||+|.+.....+. ...++|+|+++.+...|+-.
T Consensus 146 fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 146 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 3345566677788888888999999999999998765542 12589999999999988865
Q ss_pred cCCCC-------CeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc-------------cChHHHHHHHHHHHhhcccCcEE
Q 043471 96 NGHFE-------NVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY-------------LSDKEVEKLAERMVKWLKVGGYI 155 (485)
Q Consensus 96 ~~~~~-------~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~-------------~~~~~~~~~l~~~~~~L~pgG~l 155 (485)
+...+ .-.+..++....+ .....+||+|+++=.+.- .... --.++..+.+.|+|||++
T Consensus 226 l~l~~~~~~i~~~~~~~~~~~l~~d-~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~ 303 (524)
T d2ar0a1 226 CLLHDIEGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRA 303 (524)
T ss_dssp HHTTTCCCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEE
T ss_pred HHhhcccccccccchhhhhhhhhhc-ccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcE
Confidence 32111 1233333332211 013467999998732210 0111 235899999999999998
Q ss_pred EEEec
Q 043471 156 FFRES 160 (485)
Q Consensus 156 ~~~~~ 160 (485)
.+-.+
T Consensus 304 aiIlP 308 (524)
T d2ar0a1 304 AVVVP 308 (524)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.13 E-value=0.0011 Score=54.62 Aligned_cols=104 Identities=20% Similarity=0.134 Sum_probs=71.3
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-------
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------- 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------- 344 (485)
..+++..++++.+||=+|||. |..+..+++..|+ +|+++|.++.-++.|++.-. . .+...+-.+..
T Consensus 17 ~a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga----~-~~~~~~~~~~~~~~~~~~ 91 (171)
T d1pl8a2 17 HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----D-LVLQISKESPQEIARKVE 91 (171)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----S-EEEECSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC----c-cccccccccccccccccc
Confidence 345667889999999999976 4556667776677 89999999999999976421 1 11221111100
Q ss_pred -CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 345 -YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 345 -~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
-....+|+|+..-. -+..++.+.+.++|||++++....
T Consensus 92 ~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 92 GQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp HHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred ccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEecC
Confidence 01246888877432 245788999999999999887543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.09 E-value=0.001 Score=54.83 Aligned_cols=103 Identities=16% Similarity=0.125 Sum_probs=72.5
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC------C
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------Y 345 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------~ 345 (485)
..++...++++.+||=+|||. |..+..+++..|+ +|+++|.++.-++.|++.-. ..++...-.+.. .
T Consensus 18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa-----~~~i~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA-----TDILNYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC-----SEEECGGGSCHHHHHHHHT
T ss_pred HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc-----cccccccchhHHHHHHHHh
Confidence 446777899999999999986 7788888888776 79999999999999987521 122222111110 1
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
....+|+|+-.-.- ...+++..+.++|+|++++.-.
T Consensus 93 ~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 93 NGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp TTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred hccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 23459998774321 3456888899999999998754
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.06 E-value=0.00063 Score=56.68 Aligned_cols=100 Identities=19% Similarity=0.230 Sum_probs=65.6
Q ss_pred HHhccCCCCCCCcEEEEcCCC-CcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-------
Q 043471 45 EVLSLLPPYEGKTVLEFGAGI-GRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------- 114 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------- 114 (485)
.+.+....++|.+||-+|||. |.....+++. |+ +|+++|.+++.++.+++.-. -..+ +..+.+.
T Consensus 19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi--~~~~~~~~~~~~~i 92 (182)
T d1vj0a2 19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----DLTL--NRRETSVEERRKAI 92 (182)
T ss_dssp HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----SEEE--ETTTSCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc----eEEE--eccccchHHHHHHH
Confidence 333445667899999999874 5566666665 76 79999999999999987521 1111 2221110
Q ss_pred -C-CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 115 -T-FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 115 -~-~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
. .....+|+|+-.. . ....++...+.|+|||.+++-
T Consensus 93 ~~~~~~~g~Dvvid~v-----G---~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 93 MDITHGRGADFILEAT-----G---DSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHTTTSCEEEEEECS-----S---CTTHHHHHHHHEEEEEEEEEC
T ss_pred HHhhCCCCceEEeecC-----C---chhHHHHHHHHhcCCCEEEEE
Confidence 0 1234599988432 1 124678889999999998774
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.0012 Score=54.37 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=68.0
Q ss_pred HHhccCCCCCCCcEEEEcC--CCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC------C
Q 043471 45 EVLSLLPPYEGKTVLEFGA--GIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL------T 115 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~------~ 115 (485)
.+.+....++|.+||-.|+ |.|..+..+++. |++|++++.|++..+.+++.-. -..+ |..+.++ .
T Consensus 19 al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga----~~vi--~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 19 ALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----HEVF--NHREVNYIDKIKKY 92 (174)
T ss_dssp HHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEE--ETTSTTHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc----cccc--ccccccHHHHhhhh
Confidence 3445556778999999997 456667777776 8999999999988888887421 1222 3333211 0
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.....+|+|+.... ...+....++|+|+|.++.-
T Consensus 93 t~~~g~d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA---------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HCTTCEEEEEESCH---------HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCceEEeeccc---------HHHHHHHHhccCCCCEEEEE
Confidence 12457999996531 24677888999999998873
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.98 E-value=0.00017 Score=62.77 Aligned_cols=87 Identities=17% Similarity=0.091 Sum_probs=62.3
Q ss_pred HHhccCCCCCC--CcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHH---HcC--C------CCCeEEEEeeccC
Q 043471 45 EVLSLLPPYEG--KTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEE---VNG--H------FENVKFMCADVTS 111 (485)
Q Consensus 45 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~---~~~--~------~~~~~~~~~d~~~ 111 (485)
.+.+.++.+.+ .+|||.=||.|..+..|+..|++|+++|-++......+. +.. . ..+++++.+|..+
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~ 156 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence 45566665544 489999999999999999999999999999977554443 211 1 1378999999765
Q ss_pred CCCCCCCCCeeEEEhhhhhhc
Q 043471 112 PDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 112 ~~~~~~~~~~D~v~~~~~~~~ 132 (485)
. +.-..++||+|+.-=++.+
T Consensus 157 ~-L~~~~~~~DvIYlDPMFp~ 176 (250)
T d2oyra1 157 A-LTDITPRPQVVYLDPMFPH 176 (250)
T ss_dssp H-STTCSSCCSEEEECCCCCC
T ss_pred H-HhccCCCCCEEEECCCCcc
Confidence 3 2223567999997544443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.001 Score=60.77 Aligned_cols=72 Identities=18% Similarity=0.155 Sum_probs=58.4
Q ss_pred hHHHHHHHHHcCCC------CCCEEEEECCCCChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCC
Q 043471 269 IETTKEFVAKLDLK------PGQKVLDVGCGIGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCT 341 (485)
Q Consensus 269 ~~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~ 341 (485)
...+..+++.+.+. .+..|||||+|.|.++..|.+..+ .+++++|+++...+..++... ..+++++.+|+.
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~--~~~~~ii~~D~l 100 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE--GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT--TSSCEEECSCTT
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc--CCCcEEEeCchh
Confidence 35677788777543 466899999999999999988643 489999999999999988865 347889999876
Q ss_pred C
Q 043471 342 K 342 (485)
Q Consensus 342 ~ 342 (485)
.
T Consensus 101 ~ 101 (322)
T d1i4wa_ 101 D 101 (322)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.92 E-value=0.00072 Score=55.82 Aligned_cols=99 Identities=18% Similarity=0.126 Sum_probs=66.9
Q ss_pred hccCCCCCCCcEEEEcCCC-CcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCC-----CCCCCC
Q 043471 47 LSLLPPYEGKTVLEFGAGI-GRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSP-----DLTFSE 118 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-----~~~~~~ 118 (485)
++....++|.+||=+|||. |..+..+++. |+ +|+++|.+++-++.|++.-. ...+...-.+. ++ ...
T Consensus 20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa----~~~i~~~~~~~~~~v~~~-t~g 94 (174)
T d1jqba2 20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA----TDILNYKNGHIEDQVMKL-TNG 94 (174)
T ss_dssp HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC----SEEECGGGSCHHHHHHHH-TTT
T ss_pred HHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc----cccccccchhHHHHHHHH-hhc
Confidence 4566778899999999986 6667777775 75 79999999999999987521 12222111110 01 112
Q ss_pred CCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 119 DSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
..+|+|+-.- . ....+.+..++++|+|.+++.
T Consensus 95 ~G~D~vid~~-----g---~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 95 KGVDRVIMAG-----G---GSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp SCEEEEEECS-----S---CTTHHHHHHHHEEEEEEEEEC
T ss_pred cCcceEEEcc-----C---CHHHHHHHHHHHhcCCEEEEE
Confidence 4599987532 1 124677888999999999884
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.91 E-value=0.0032 Score=51.78 Aligned_cols=103 Identities=12% Similarity=0.200 Sum_probs=70.7
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC-----CCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK-----TYP 346 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~-----~~~ 346 (485)
.+++..+++++.+||=+|||. |..+..+++..+. .++.+|.++.-++.+++.-. ..++..+-.+. .+.
T Consensus 19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga-----~~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA-----THVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC-----SEEEETTTSCHHHHHHHHT
T ss_pred HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC-----eEEEeCCCcCHHHHHHHHc
Confidence 456667899999999999975 4455666666655 77888999999999987521 12333222211 122
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
++.+|+|+-.- .....++.+.++++|+|++++...
T Consensus 94 ~gg~D~vid~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 94 DGGVNFALEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp TSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCCcEEEEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 45799888643 234677899999999999988643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.90 E-value=0.00023 Score=60.20 Aligned_cols=107 Identities=17% Similarity=0.077 Sum_probs=68.8
Q ss_pred hccCCCCCCCcEEEEcCCC-CcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC------CC
Q 043471 47 LSLLPPYEGKTVLEFGAGI-GRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT------FS 117 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~------~~ 117 (485)
++....++|.+||-+|||. |..+..+++. ++ +|+++|.+++.++.|++.- .+... +..+.++. ..
T Consensus 18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-----a~~~~-~~~~~~~~~~i~~~t~ 91 (195)
T d1kola2 18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-----FEIAD-LSLDTPLHEQIAALLG 91 (195)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-----CEEEE-TTSSSCHHHHHHHHHS
T ss_pred HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-----ccEEE-eCCCcCHHHHHHHHhC
Confidence 4567788999999999998 5556666664 55 8999999999999998852 12111 11111010 12
Q ss_pred CCCeeEEEhhhh------hhc-cChHHHHHHHHHHHhhcccCcEEEEEe
Q 043471 118 EDSVDMMFSNWL------LMY-LSDKEVEKLAERMVKWLKVGGYIFFRE 159 (485)
Q Consensus 118 ~~~~D~v~~~~~------~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 159 (485)
...+|+++-... .++ .......+.++.+.++++|||.+.+.-
T Consensus 92 g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 92 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 346888883211 111 111112368999999999999998853
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0024 Score=52.51 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=69.5
Q ss_pred HHHHcCCCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------
Q 043471 275 FVAKLDLKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-------- 344 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-------- 344 (485)
+.+...++++.+||-.|+ |.|..+..+++..|+++++++.+++..+.+++. +. . .++ |..+..
T Consensus 20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--Ga--~-~vi--~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--GA--H-EVF--NHREVNYIDKIKKY 92 (174)
T ss_dssp HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TC--S-EEE--ETTSTTHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEeccccccccccccccccCccccccccccccccccccc--Cc--c-ccc--ccccccHHHHhhhh
Confidence 345557889999999996 456777888888899999999999888888753 11 1 122 222211
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.....+|+|+..-. ...++...++|+|+|+++..
T Consensus 93 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 93 VGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred hccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence 12456999987532 34678889999999999876
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.77 E-value=0.0018 Score=52.75 Aligned_cols=101 Identities=20% Similarity=0.193 Sum_probs=67.3
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----CCC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-----YPE 347 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-----~~~ 347 (485)
..+++..++++.+||=+|||. |..+..+++..|.+|+++|.++.-++.+++.-. . .++...-.+.. ...
T Consensus 18 ~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~-~~i~~~~~~~~~~~~~~~~ 92 (166)
T d1llua2 18 KGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----S-LTVNARQEDPVEAIQRDIG 92 (166)
T ss_dssp HHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----S-EEEETTTSCHHHHHHHHHS
T ss_pred HHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----c-ccccccchhHHHHHHHhhc
Confidence 345667889999999999875 666777887778999999999999999876421 1 22222211110 011
Q ss_pred CCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 348 NSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 348 ~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
+.++.|++.. -...+....+.|+|||++++.-
T Consensus 93 g~~~~i~~~~-------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 93 GAHGVLVTAV-------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp SEEEEEECCS-------CHHHHHHHHTTEEEEEEEEECC
T ss_pred CCcccccccc-------cchHHHHHHHHhcCCcEEEEEE
Confidence 2234444322 2456788999999999998864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.76 E-value=0.0053 Score=50.09 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=69.9
Q ss_pred HHHHHcCCCCCCEEEEECCC--CChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC------
Q 043471 274 EFVAKLDLKPGQKVLDVGCG--IGGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------ 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------ 344 (485)
..+++..++++.+||=+||+ .|..+..+++..+ .+|+++|.++.-++.+++.-. . .++..+-.+..
T Consensus 18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~-~~i~~~~~~~~~~~~~~ 92 (170)
T d1jvba2 18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----D-YVINASMQDPLAEIRRI 92 (170)
T ss_dssp HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----S-EEEETTTSCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----c-eeeccCCcCHHHHHHHH
Confidence 45677789999999999973 3455555666555 599999999999999887521 1 22222221110
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
...+.||+|+.... -...++.+.+.|+|||++++.-.
T Consensus 93 ~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 93 TESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp TTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhcccchhhhcccc------cchHHHhhhhhcccCCEEEEecc
Confidence 12356998887532 34566788899999999988743
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.68 E-value=0.00098 Score=57.83 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=64.3
Q ss_pred HHHHHcCCCCC--CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc---C-------CCCCeEEEEccCC
Q 043471 274 EFVAKLDLKPG--QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI---G-------LKCSVEFEVADCT 341 (485)
Q Consensus 274 ~~~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~---~-------~~~~i~~~~~d~~ 341 (485)
.+.+.++++++ .+|||.-||.|..+..++.. |++|+++|-+|.+....+..+. . ...+++++++|..
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~ 155 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH
Confidence 45566666554 48999999999999999977 8899999999987666554332 1 1136899999865
Q ss_pred CC-CCCCCCccEEEEccccccc
Q 043471 342 KK-TYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 342 ~~-~~~~~~fD~i~~~~~~~~~ 362 (485)
+. .-...+||+|+.-.++.+-
T Consensus 156 ~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 156 TALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp HHSTTCSSCCSEEEECCCCCCC
T ss_pred HHHhccCCCCCEEEECCCCccc
Confidence 53 2224679999998877554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.59 E-value=0.0065 Score=49.79 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=72.1
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-------
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------- 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------- 344 (485)
.+++...+++|.+||=+|||. |..+..+++..|+ .|+.+|.++.-++.|++.-. ..++...-.+..
T Consensus 19 a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 19 AAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA-----TDCLNPRELDKPVQDVITE 93 (174)
T ss_dssp HHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC-----CcccCCccchhhhhhhHhh
Confidence 345666789999999999987 7888888888876 79999999999888887421 112221111111
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCC-cEEEEEec
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPG-GTVLISDY 387 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~ 387 (485)
...+.+|+|+-.- ..+..+.+..+.++|| |++++.-.
T Consensus 94 ~~~~G~d~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 94 LTAGGVDYSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHTSCBSEEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhcCCCcEEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 1135688887643 2356789999999996 99988743
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.48 E-value=0.003 Score=51.86 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=69.7
Q ss_pred HHHhccCCCCCCCcEEEEcCCC-CcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-----C
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGI-GRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-----T 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~ 115 (485)
..+++....++|++||=+|||. |..+..+++. |+ .|+.+|.+++.++.|++.-. ...+...-.+... .
T Consensus 18 ~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 18 GAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITE 93 (174)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC----CcccCCccchhhhhhhHhh
Confidence 3455667788899999999988 6677777776 76 79999999999999988522 1222211111000 0
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccC-cEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG-GYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~ 158 (485)
...+.+|+|+-.. . ....+.+..+.++|| |.+++.
T Consensus 94 ~~~~G~d~vie~~-----G---~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 94 LTAGGVDYSLDCA-----G---TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp HHTSCBSEEEESS-----C---CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhcCCCcEEEEec-----c---cchHHHHHHHHhhcCCeEEEec
Confidence 1235689887431 1 236889999999996 998884
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.48 E-value=0.0071 Score=55.27 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCcEEEEcCCCCcchHHHHhh------------c------CcEEEEeCChHHHHHHHHHcCCC---CCeEEEEeeccCC-
Q 043471 55 GKTVLEFGAGIGRFTGELAKK------------A------GHVIALDFIDSVIKKNEEVNGHF---ENVKFMCADVTSP- 112 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~------------~------~~v~giD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~- 112 (485)
.-+|.|+||.+|..++.+... + .+|.--|+..+--...=+.+... .+.-|+.+-...+
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 368999999999888533321 1 15677777654333222222111 1112333322222
Q ss_pred CCCCCCCCeeEEEhhhhhhccCh-------------------------------HHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 113 DLTFSEDSVDMMFSNWLLMYLSD-------------------------------KEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 113 ~~~~~~~~~D~v~~~~~~~~~~~-------------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
.-.||+++.++++|+.++||++. .++..+|+.=.+=|+|||.+++.-..
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 24589999999999999999752 13557888888999999999996544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.004 Score=50.67 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC------CC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------YP 346 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------~~ 346 (485)
..+....++|+.+||=.|||+ |..+..+++..+++|+++|.++.-++.+++.- .+.......+.. ..
T Consensus 18 ~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G------a~~~~~~~~~~~~~~~~~~~ 91 (168)
T d1rjwa2 18 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG------ADLVVNPLKEDAAKFMKEKV 91 (168)
T ss_dssp HHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT------CSEEECTTTSCHHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC------cceecccccchhhhhccccc
Confidence 345566789999999999976 44556677777889999999999999887641 222221111110 01
Q ss_pred CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 347 ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 347 ~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.+.+|+|++.. -...+....+.|+|||++++..
T Consensus 92 ~~~~~~v~~~~-------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 92 GGVHAAVVTAV-------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp SSEEEEEESSC-------CHHHHHHHHHHEEEEEEEEECC
T ss_pred CCCceEEeecC-------CHHHHHHHHHHhccCCceEecc
Confidence 23344443321 2467889999999999998874
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.17 E-value=0.011 Score=48.26 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=64.9
Q ss_pred CCCCCCEEEEECCCC-ChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----CCCCCccE
Q 043471 280 DLKPGQKVLDVGCGI-GGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-----YPENSFDV 352 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-----~~~~~fD~ 352 (485)
.++|+..||=+|+|. |..+..+++..+ ..++++|.+++-++.+++... ..++..+-.... .....+|+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga-----~~~i~~~~~~~~~~~~~~~~~g~d~ 103 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA-----DHVVDARRDPVKQVMELTRGRGVNV 103 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC-----SEEEETTSCHHHHHHHHTTTCCEEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc-----ceeecCcccHHHHHHHhhCCCCceE
Confidence 468899999999976 444556666555 588999999999888886432 123322111000 12345888
Q ss_pred EEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 353 IYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 353 i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
|+..-. -...++...+.|++||++++.-.
T Consensus 104 vid~~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 104 AMDFVG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EEESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 876432 24467889999999999998753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.03 E-value=0.0016 Score=53.41 Aligned_cols=97 Identities=14% Similarity=0.222 Sum_probs=66.8
Q ss_pred HHHHHcCCCCCCEEEEECC-C-CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC---CCCC
Q 043471 274 EFVAKLDLKPGQKVLDVGC-G-IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT---YPEN 348 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~---~~~~ 348 (485)
..++...++|+++||=.|. | .|..+..+++..|++|++++.+++..+.+++.-. ...+ |..+.. -...
T Consensus 18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa----~~~i---~~~~~~~~~~~~~ 90 (171)
T d1iz0a2 18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA----EEAA---TYAEVPERAKAWG 90 (171)
T ss_dssp HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC----SEEE---EGGGHHHHHHHTT
T ss_pred HHHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc----ceee---ehhhhhhhhhccc
Confidence 3456678899999999884 3 3677778888889999999999988888876311 1111 222211 1135
Q ss_pred CccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 349 SFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.+|+|+-... + .+....+.|+|||+++..
T Consensus 91 g~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 91 GLDLVLEVRG----K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp SEEEEEECSC----T----THHHHHTTEEEEEEEEEC
T ss_pred cccccccccc----h----hHHHHHHHHhcCCcEEEE
Confidence 6999887321 1 257788999999999875
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.96 E-value=0.011 Score=48.21 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=67.7
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCc-chHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC---CCCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGR-FTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD---LTFS 117 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~~~~ 117 (485)
..+++....+++.+||=+|||.-. .+..+++. |. +|+.+|.+++-++.+++.- -..++..+-.+.. ..+.
T Consensus 18 ~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G----a~~~i~~~~~~~~~~i~~~t 93 (174)
T d1f8fa2 18 GACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG----ATHVINSKTQDPVAAIKEIT 93 (174)
T ss_dssp HHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT----CSEEEETTTSCHHHHHHHHT
T ss_pred HHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC----CeEEEeCCCcCHHHHHHHHc
Confidence 455677788899999999997543 34455554 66 5678899999999998852 2233322211100 0122
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
++.+|+|+-.- . ....++.+.++++|+|.+++.
T Consensus 94 ~gg~D~vid~~-----G---~~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 94 DGGVNFALEST-----G---SPEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp TSCEEEEEECS-----C---CHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEEcC-----C---cHHHHHHHHhcccCceEEEEE
Confidence 46799988431 1 236788899999999999874
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.93 E-value=0.013 Score=47.29 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=59.3
Q ss_pred CcEEEEcCC--CCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhcc
Q 043471 56 KTVLEFGAG--IGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMYL 133 (485)
Q Consensus 56 ~~vLDiGcG--~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~~ 133 (485)
++|.=||+| -+.++..|.++|.+|++.|.+++.++.+++.. .+.....+.+. -...|+|+..-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~------~~~~DiIilav----- 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ----LVDEAGQDLSL------LQTAKIIFLCT----- 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----SCSEEESCGGG------GTTCSEEEECS-----
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh----ccceeeeeccc------ccccccccccC-----
Confidence 356678876 23455677777999999999999998887742 22222223222 14679888642
Q ss_pred ChHHHHHHHHHHHhhcccCcEEEE
Q 043471 134 SDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 134 ~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+....+++++++...++++-+++-
T Consensus 66 p~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 66 PIQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred cHhhhhhhhhhhhhhcccccceee
Confidence 455577899999999999876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.90 E-value=0.0053 Score=50.39 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=71.8
Q ss_pred HHHHHHcCCCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC-CCCCCCC
Q 043471 273 KEFVAKLDLKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK-KTYPENS 349 (485)
Q Consensus 273 ~~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~-~~~~~~~ 349 (485)
..+.+.-..+++.+||=-|+ |.|.++..+++..|++|+++.-|++-.+.+++.-.. .-+.....+... .....+.
T Consensus 21 ~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~--~vi~~~~~~~~~~~~~~~~g 98 (176)
T d1xa0a2 21 HRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK--EVLAREDVMAERIRPLDKQR 98 (176)
T ss_dssp HHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS--EEEECC---------CCSCC
T ss_pred HHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc--eeeecchhHHHHHHHhhccC
Confidence 34455556778899999986 446788889988899999999999988888764221 011111100011 1123467
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecccCC
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYCKSF 391 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 391 (485)
+|+|+-.-.- ..+.+..++|+|||+++..-.....
T Consensus 99 vD~vid~vgg-------~~~~~~l~~l~~~Griv~~G~~~g~ 133 (176)
T d1xa0a2 99 WAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGLTGGA 133 (176)
T ss_dssp EEEEEECSTT-------TTHHHHHHTEEEEEEEEECSCCSSS
T ss_pred cCEEEEcCCc-------hhHHHHHHHhCCCceEEEeecccCc
Confidence 9988875321 2368899999999999887554433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0037 Score=51.19 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=65.1
Q ss_pred hccCCCCCCCcEEEEcCCCCcc-hHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-----CC-CC
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRF-TGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-----LT-FS 117 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~-~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-----~~-~~ 117 (485)
++.....++.+||=+|||.... +..+++. |+ +|+++|.+++-++.|++.-. -..+..+-.+.. +. -.
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga----~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----DLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEECSSCCHHHHHHHHHHHH
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC----cccccccccccccccccccccC
Confidence 3455678899999999976554 4455554 77 79999999999999987521 111211111100 00 01
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...+|+|+... + -...++...++++|||.+++.
T Consensus 95 g~g~Dvvid~~-----G---~~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 95 GCKPEVTIECT-----G---AEASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp TSCCSEEEECS-----C---CHHHHHHHHHHSCTTCEEEEC
T ss_pred CCCceEEEecc-----C---CchhHHHHHHHhcCCCEEEEE
Confidence 24689887542 1 235788999999999999884
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0024 Score=52.14 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=64.9
Q ss_pred HhccCCCCCCCcEEEEcCCC-CcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-CCCCCCCee
Q 043471 46 VLSLLPPYEGKTVLEFGAGI-GRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-LTFSEDSVD 122 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~D 122 (485)
.++....++|++||=+|||. |.++..+++. |++++++|.+++-.+.+++.-. -.++ |..+.+ .......+|
T Consensus 22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d~~i--~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVV--NSRNADEMAAHLKSFD 95 (168)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEE--ETTCHHHHHTTTTCEE
T ss_pred HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----cEEE--ECchhhHHHHhcCCCc
Confidence 34667788999999999864 3445566664 8899999999998888877522 1222 211110 111235799
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+|+..-. ....+....++++|+|.+++.
T Consensus 96 ~vid~~g--------~~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 96 FILNTVA--------APHNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp EEEECCS--------SCCCHHHHHTTEEEEEEEEEC
T ss_pred eeeeeee--------cchhHHHHHHHHhcCCEEEEe
Confidence 9875421 113466788999999999884
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.022 Score=46.58 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=68.9
Q ss_pred HHHcCCCCCCEEEEECCC--CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC--------
Q 043471 276 VAKLDLKPGQKVLDVGCG--IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY-------- 345 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~-------- 345 (485)
.+...++|+.+||=.|+| .|..+..+++..|++|++++.|++-.+.+++.-. . .++ |..+..+
T Consensus 21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa----~-~vi--~~~~~d~~~~v~~~t 93 (179)
T d1qora2 21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA----W-QVI--NYREEDLVERLKEIT 93 (179)
T ss_dssp HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC----S-EEE--ETTTSCHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC----e-EEE--ECCCCCHHHHHHHHh
Confidence 344578899999999765 4677888888889999999999999999886521 1 122 3222211
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
....+|+|+..-.- +.+....+.|+|+|++++..
T Consensus 94 ~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 94 GGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp TTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred CCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 24568988875432 24578899999999987753
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.011 Score=48.59 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHHcCCCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------
Q 043471 275 FVAKLDLKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-------- 344 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-------- 344 (485)
+.+...++++++||=.|. |.|..+..+++..|+++++++-+++..+.+++. +.. ..+ |..+..
T Consensus 17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~----Ga~-~vi--~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL----GVE-YVG--DSRSVDFADEILEL 89 (183)
T ss_dssp HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT----CCS-EEE--ETTCSTHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccc----ccc-ccc--cCCccCHHHHHHHH
Confidence 445557889999999873 456778888887799999999888888877653 212 122 222211
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.....||+|+..-. .+.++.+.++|+|+|+++..
T Consensus 90 t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 12457999998543 24678889999999998876
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.75 E-value=0.0025 Score=51.26 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=68.4
Q ss_pred CCCEEEEECCCC-ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEcccccc
Q 043471 283 PGQKVLDVGCGI-GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILH 361 (485)
Q Consensus 283 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~ 361 (485)
++.+|+=||+|. |..+...+..+|+.|+.+|.+++.++..+....+ +++....+-..+.-.-...|+|+..-.+--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---~~~~~~~~~~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---RVELLYSNSAEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---GSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---cceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence 356999999996 6677788888899999999999999988877643 455544332222111245899999754433
Q ss_pred cCCHHHHHHHHHhcCCCCcEEE
Q 043471 362 IQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 362 ~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
-+.+.-+-+++.+.+|||..++
T Consensus 108 ~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 108 RRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp SSCCCCBCHHHHTTSCTTCEEE
T ss_pred cccCeeecHHHHhhcCCCcEEE
Confidence 2334444589999999998653
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.65 E-value=0.049 Score=44.34 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEE-ccCCCCC------C
Q 043471 275 FVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEV-ADCTKKT------Y 345 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~-~d~~~~~------~ 345 (485)
+++...+++|+.||=+|||. |..+..+++..+ .+|+++|.+++-++.|++.-. .. ++. .+..... .
T Consensus 21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA----~~-~in~~~~~~~~~~~~~~~ 95 (176)
T d1d1ta2 21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA----TE-CISPKDSTKPISEVLSEM 95 (176)
T ss_dssp HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC----SE-EECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC----cE-EECccccchHHHHHHHHh
Confidence 45666789999999999975 455666777766 589999999999999998743 11 222 1111110 1
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
....+|+|+-... ........+..+++++|++++.-.
T Consensus 96 ~g~G~d~vi~~~g-----~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 96 TGNNVGYTFEVIG-----HLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HTSCCCEEEECSC-----CHHHHHHHHTTSCTTTCEEEECSC
T ss_pred ccccceEEEEeCC-----chHHHHHHHHHhhcCCeEEEEEEc
Confidence 1345887776432 233333344445566699888743
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.63 E-value=0.0089 Score=48.64 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=65.7
Q ss_pred HhccCCCCCCCcEEEEcCC--CCcchHHHHhh-c-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC---C-CCC
Q 043471 46 VLSLLPPYEGKTVLEFGAG--IGRFTGELAKK-A-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD---L-TFS 117 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG--~G~~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~---~-~~~ 117 (485)
.+......++.+||=+||| .|..+..+++. | .+|+++|.+++-++.+++.-. -..+..+-.++. . ...
T Consensus 19 al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 19 AVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----DYVINASMQDPLAEIRRITE 94 (170)
T ss_dssp HHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTT
T ss_pred HHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----ceeeccCCcCHHHHHHHHhh
Confidence 4566778889999999973 44445555554 5 599999999999999988521 122221111100 0 012
Q ss_pred CCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 118 EDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 118 ~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+.||+|+... . -...++...+.++|||.+++.
T Consensus 95 ~~~~d~vid~~-----g---~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 95 SKGVDAVIDLN-----N---SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TSCEEEEEESC-----C---CHHHHTTGGGGEEEEEEEEEC
T ss_pred cccchhhhccc-----c---cchHHHhhhhhcccCCEEEEe
Confidence 35699988642 1 235777889999999999874
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.55 E-value=0.018 Score=50.11 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHHcCCCCCCEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhc
Q 043471 266 TGGIETTKEFVAKLDLKPGQKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAI 327 (485)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~ 327 (485)
+...+.++.+++.. ..+|..|||.=||+|..+....+. |-+.+|+|+++..++.|++++.
T Consensus 196 ~kP~~L~~~lI~~~-s~~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 196 PKPRDLIERIIRAS-SNPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCCHHHHHHHHHHH-CCTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHh-CCCCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 34456778888877 477899999999999888766554 8899999999999999999874
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.50 E-value=0.0068 Score=54.85 Aligned_cols=59 Identities=7% Similarity=-0.020 Sum_probs=49.9
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcCC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNGH 98 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~ 98 (485)
+....+++++.. ..+|+.|||.=||+|..+....+.|-+.+|+|+++++++.|++|+..
T Consensus 236 P~~L~~rlI~~~-s~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 236 PAKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp CTHHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred chHHHHHhhhhc-ccCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence 334556666655 45789999999999999999989999999999999999999998753
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.41 E-value=0.0075 Score=52.65 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=49.2
Q ss_pred ChhhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC
Q 043471 39 DKEERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG 97 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~ 97 (485)
+.+..+++++... .+|+.|||.=||+|..+....+.|-+.+|+|++++.++.|++|+.
T Consensus 198 P~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 198 PRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 3445566666654 668899999999999999998999999999999999999999863
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.40 E-value=0.011 Score=47.86 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=62.7
Q ss_pred hccCCCCCCCcEEEEcCCCC-cchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-----CCCC
Q 043471 47 LSLLPPYEGKTVLEFGAGIG-RFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-----FSED 119 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-----~~~~ 119 (485)
++....+++.+||=+|||.= ..+..+++. |.+|+++|.+++.++.+++.-. ..++ |..+.+.. ...+
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~~~i--~~~~~~~~~~~~~~~~g 93 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----SLTV--NARQEDPVEAIQRDIGG 93 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEE--ETTTSCHHHHHHHHHSS
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----cccc--cccchhHHHHHHHhhcC
Confidence 44566788999999998753 334555554 8999999999999999987521 2222 22221110 0123
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.++.|++... ...+....+.|+|||.+++.
T Consensus 94 ~~~~i~~~~~---------~~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 94 AHGVLVTAVS---------NSAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp EEEEEECCSC---------HHHHHHHHTTEEEEEEEEEC
T ss_pred Cccccccccc---------chHHHHHHHHhcCCcEEEEE
Confidence 3455555431 25678889999999999883
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=95.32 E-value=0.021 Score=46.65 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=66.7
Q ss_pred HHhccCCCCCCCcEEEEcCCC--CcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC------
Q 043471 45 EVLSLLPPYEGKTVLEFGAGI--GRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT------ 115 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~------ 115 (485)
.+.+....+++.+||=.|+|. |.....+++. |++|++++.|++-.+.+++.-. -..+ |..+.++.
T Consensus 19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa----~~vi--~~~~~d~~~~v~~~ 92 (179)
T d1qora2 19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA----WQVI--NYREEDLVERLKEI 92 (179)
T ss_dssp HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC----SEEE--ETTTSCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC----eEEE--ECCCCCHHHHHHHH
Confidence 344455677899999997664 5666777776 8999999999999999887522 1222 33332111
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-....+|+|+.... . +.+....+.++|+|.+++.
T Consensus 93 t~g~g~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 93 TGGKKVRVVYDSVG-----R----DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp TTTCCEEEEEECSC-----G----GGHHHHHHTEEEEEEEEEC
T ss_pred hCCCCeEEEEeCcc-----H----HHHHHHHHHHhcCCeeeec
Confidence 12457999886532 1 3567788999999998763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.26 E-value=0.088 Score=42.61 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=65.3
Q ss_pred HHHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-------
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------- 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------- 344 (485)
.+++...+++|++||=+|||. |..+..+++..++ +|+++|.++.-++.|++.-. ..++...-.+..
T Consensus 18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa-----~~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA-----TECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC-----cEEEcCCCchhHHHHHHHH
Confidence 345666799999999999976 4455566666664 89999999999999986421 122221111111
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcC-CCCcEEEEEecc
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWL-KPGGTVLISDYC 388 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~ 388 (485)
...+.+|+|+-.-. . ...+.+....+ +++|++++.-..
T Consensus 93 ~~~~G~d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 93 KTNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp HTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred hcCCCCcEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEEe
Confidence 11346888876432 2 34455555555 556998887543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.25 E-value=0.0026 Score=51.83 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=62.2
Q ss_pred hccCCCCCCCcEEEEcCCCCcch-HHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-----CCCC
Q 043471 47 LSLLPPYEGKTVLEFGAGIGRFT-GELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-----FSED 119 (485)
Q Consensus 47 ~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-----~~~~ 119 (485)
+......++++||=+|||.-.+. ..+++. |++|+++|.+++-++.+++. + .+.+. +..+.+.. ...+
T Consensus 20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~-G----a~~~~-~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL-G----ADLVV-NPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-T----CSEEE-CTTTSCHHHHHHHHHSS
T ss_pred HHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc-C----cceec-ccccchhhhhcccccCC
Confidence 44456778999999998775543 444444 88999999999999999884 1 11111 11111110 0123
Q ss_pred CeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 120 SVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 120 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+|+|++.. . ...+....+.|+|||.+++.
T Consensus 94 ~~~~v~~~~-----~----~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 94 VHAAVVTAV-----S----KPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp EEEEEESSC-----C----HHHHHHHHHHEEEEEEEEEC
T ss_pred CceEEeecC-----C----HHHHHHHHHHhccCCceEec
Confidence 455555432 2 25788899999999999884
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=95.15 E-value=0.039 Score=45.20 Aligned_cols=101 Identities=15% Similarity=0.133 Sum_probs=70.1
Q ss_pred HHHHHcCCCCCCEEEEECCCC--ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCC------CC
Q 043471 274 EFVAKLDLKPGQKVLDVGCGI--GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKK------TY 345 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~------~~ 345 (485)
.+.+..++++|++||=.|++. |..+..+++..|++|++++-+++..+.+++.-. . .++..+-.+. ..
T Consensus 20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~-~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----D-AAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----S-EEEETTSCSCHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----h-hhcccccccHHHHHHHHh
Confidence 344566789999999888754 567788888889999999999998888776521 1 1222111111 01
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEe
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
....+|+|+-.-. .+.++++.+.|+|||++++.-
T Consensus 95 ~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 95 SPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp CTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEECC
T ss_pred hcCCCceeEEecC-------chhhhhhhhhccCCCeEEeec
Confidence 2356899887432 346789999999999998763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.02 E-value=0.025 Score=46.33 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=64.9
Q ss_pred HHhccCCCCCCCcEEEEcC--CCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC------
Q 043471 45 EVLSLLPPYEGKTVLEFGA--GIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT------ 115 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~------ 115 (485)
.+.+.....+|++||=.|. |.|..+.-+++. |++|+++.-+++-.+.+++.-. -..+ |..+.++.
T Consensus 16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga----~~vi--~~~~~~~~~~v~~~ 89 (183)
T d1pqwa_ 16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV----EYVG--DSRSVDFADEILEL 89 (183)
T ss_dssp HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC----SEEE--ETTCSTHHHHHHHH
T ss_pred HHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc----cccc--cCCccCHHHHHHHH
Confidence 4455566788999999873 344555666665 8999999999888888876421 1222 22222110
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.....||+|+.... . +.++.+.++|+|+|.++..
T Consensus 90 t~~~g~d~v~d~~g-----~----~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 90 TDGYGVDVVLNSLA-----G----EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp TTTCCEEEEEECCC-----T----HHHHHHHHTEEEEEEEEEC
T ss_pred hCCCCEEEEEeccc-----c----hHHHHHHHHhcCCCEEEEE
Confidence 12357999997532 2 4667788999999998873
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.94 E-value=0.01 Score=48.58 Aligned_cols=102 Identities=12% Similarity=-0.011 Sum_probs=65.3
Q ss_pred HhccCCCCCCCcEEEEcCCC--CcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCee
Q 043471 46 VLSLLPPYEGKTVLEFGAGI--GRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVD 122 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~--G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D 122 (485)
+.+.-..+++.+||=-|++. |..+.-|++. |++|+++--|++-.+.+++.-.. ..++.. .+..+.......+.||
T Consensus 23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~-~vi~~~-~~~~~~~~~~~~~gvD 100 (176)
T d1xa0a2 23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK-EVLARE-DVMAERIRPLDKQRWA 100 (176)
T ss_dssp HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS-EEEECC----------CCSCCEE
T ss_pred HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc-eeeecc-hhHHHHHHHhhccCcC
Confidence 44445566788999998644 4566777766 99999999999988888875221 112111 1111111112356899
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+|+-+- .. ..+....+.|+|||.++..
T Consensus 101 ~vid~v-----gg----~~~~~~l~~l~~~Griv~~ 127 (176)
T d1xa0a2 101 AAVDPV-----GG----RTLATVLSRMRYGGAVAVS 127 (176)
T ss_dssp EEEECS-----TT----TTHHHHHHTEEEEEEEEEC
T ss_pred EEEEcC-----Cc----hhHHHHHHHhCCCceEEEe
Confidence 988642 21 3677899999999999884
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.76 E-value=0.054 Score=44.28 Aligned_cols=102 Identities=20% Similarity=0.132 Sum_probs=68.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCC--cchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCC-C---CCC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIG--RFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSP-D---LTF 116 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G--~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~-~---~~~ 116 (485)
..+.+....++|++||=.|+|.| ..+..|++. |++|+++.-+++..+.+++.-. -..+.-+-.+. + ...
T Consensus 19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~~~~~~ 94 (182)
T d1v3va2 19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVNSLEEALKKA 94 (182)
T ss_dssp HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSCSCHHHHHHHH
T ss_pred HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----hhhcccccccHHHHHHHHh
Confidence 34456667788999998887554 456677776 8999999999998888888522 12222111110 0 001
Q ss_pred CCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 117 SEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 117 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
....+|+|+-.- .. +.+++..+.|+|||.++..
T Consensus 95 ~~~Gvd~v~D~v-----G~----~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 95 SPDGYDCYFDNV-----GG----EFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp CTTCEEEEEESS-----CH----HHHHHHGGGEEEEEEEEEC
T ss_pred hcCCCceeEEec-----Cc----hhhhhhhhhccCCCeEEee
Confidence 235699988642 22 4778899999999998873
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.65 E-value=0.11 Score=41.97 Aligned_cols=100 Identities=16% Similarity=0.150 Sum_probs=67.1
Q ss_pred HHHHcCCCCCCEEEEECCCC-ChhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-------C
Q 043471 275 FVAKLDLKPGQKVLDVGCGI-GGGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-------Y 345 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-------~ 345 (485)
+.+...++||.+||=.|||. |.++..+++..+ ..|+++|.++.-.+.+++.-. -.++...-...+ .
T Consensus 20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa-----~~~i~~~~~~~~~~~~~~~~ 94 (176)
T d2fzwa2 20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA-----TECINPQDFSKPIQEVLIEM 94 (176)
T ss_dssp HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC-----SEEECGGGCSSCHHHHHHHH
T ss_pred HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC-----cEEEeCCchhhHHHHHHHHH
Confidence 44566789999999999863 455666777666 589999999999998887522 112221111111 1
Q ss_pred CCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 346 PENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 346 ~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+.+|+|+-.-. ....++.+..++++||.+++.
T Consensus 95 ~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 95 TDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp TTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred cCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 1356899887532 346778899999999887665
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.60 E-value=0.003 Score=50.79 Aligned_cols=112 Identities=15% Similarity=0.221 Sum_probs=70.1
Q ss_pred HhccCCCCCCCcEEEEcCCCCc-chHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeE
Q 043471 46 VLSLLPPYEGKTVLEFGAGIGR-FTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDM 123 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~ 123 (485)
++..++--++.+|+=||+|.-. .+...+.. |++|+.+|.+++.++..+.... .++.....+-.. +.-.-...|+
T Consensus 23 Llgg~~gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--~~~~~~~~~~~~--l~~~~~~aDi 98 (168)
T d1pjca1 23 LLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--SRVELLYSNSAE--IETAVAEADL 98 (168)
T ss_dssp CTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGSEEEECCHHH--HHHHHHTCSE
T ss_pred EecCCCCCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--ccceeehhhhhh--HHHhhccCcE
Confidence 3334444567899999999754 45555555 9999999999999998887654 355555544332 1111246899
Q ss_pred EEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEeccCCCC
Q 043471 124 MFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESCFHQS 165 (485)
Q Consensus 124 v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 165 (485)
|+......--+. ..-+=+++.+.+|||..+ + |...+..
T Consensus 99 vI~aalipG~~a--P~lIt~~mv~~Mk~GSVI-V-DvaidqG 136 (168)
T d1pjca1 99 LIGAVLVPGRRA--PILVPASLVEQMRTGSVI-V-DVAVDQG 136 (168)
T ss_dssp EEECCCCTTSSC--CCCBCHHHHTTSCTTCEE-E-ETTCTTC
T ss_pred EEEeeecCCccc--CeeecHHHHhhcCCCcEE-E-EeecCCC
Confidence 997643221111 112335688999998754 3 4554443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.40 E-value=0.063 Score=41.24 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=58.4
Q ss_pred cEEEEcCCCCcchHHHHh----hcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC--CCCCCeeEEEhhhhh
Q 043471 57 TVLEFGAGIGRFTGELAK----KAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT--FSEDSVDMMFSNWLL 130 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~D~v~~~~~~ 130 (485)
+|+=+| .|.++..+++ .|.+|+.+|.+++.++.+++.. ++.++.+|..+.... ..-...|.+++.
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~--- 72 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAV--- 72 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEEC---
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh----hhhhccCcccchhhhhhcChhhhhhhccc---
Confidence 455555 4777777765 3889999999999998877653 567899998874321 123567887764
Q ss_pred hccChHHHHHHHHHHHhhcccCcEEE
Q 043471 131 MYLSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
.++++..-......+.+.+.-.++
T Consensus 73 --t~~d~~N~~~~~~~k~~~~~~iI~ 96 (132)
T d1lssa_ 73 --TGKEEVNLMSSLLAKSYGINKTIA 96 (132)
T ss_dssp --CSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred --CCcHHHHHHHHHHHHHcCCceEEE
Confidence 122333345555667777775543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.34 E-value=0.02 Score=50.46 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=48.1
Q ss_pred hhhHHHhccCCCCCCCcEEEEcCCCCcchHHHHhhcCcEEEEeCChHHHHHHHHHcC
Q 043471 41 EERPEVLSLLPPYEGKTVLEFGAGIGRFTGELAKKAGHVIALDFIDSVIKKNEEVNG 97 (485)
Q Consensus 41 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~ 97 (485)
+..+++++.. ..+|+.|||.=||+|..+....+.|-+.+|+|++++..+.|++|+.
T Consensus 195 ~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 195 AVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp HHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHH
T ss_pred hHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence 4456666654 4678999999999999999998899999999999999999999864
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.32 E-value=0.09 Score=48.23 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.3
Q ss_pred HHHHcCCCCCCEEEEECCCCChhHHHHhhcC--------CCEEEEEeCCHHHHHHHHHHhcC
Q 043471 275 FVAKLDLKPGQKVLDVGCGIGGGDFYMADKF--------DVHVVGIDLSINMISFALERAIG 328 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~v~g~D~s~~~~~~a~~~~~~ 328 (485)
+...+..++..+|+|+|+|+|.++..+...+ ..+++.+|+|+...+.-++++..
T Consensus 71 ~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 71 VWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp HHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred HHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence 3344555555689999999999987765532 35799999999988887777654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.30 E-value=0.015 Score=47.30 Aligned_cols=98 Identities=14% Similarity=0.181 Sum_probs=63.3
Q ss_pred CCCEEEEECCCC-ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEc---cCC-------CCC--CC---
Q 043471 283 PGQKVLDVGCGI-GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA---DCT-------KKT--YP--- 346 (485)
Q Consensus 283 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~---d~~-------~~~--~~--- 346 (485)
++.+||=||+|. |..+...|..+|+.|+.+|.++..+++.++.... .++.... +.+ .+. +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~---~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~ 104 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK---FITVDDEAMKTAETAGGYAKEMGEEFRKKQ 104 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE---ECCC-----------------------CCH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc---eEEEeccccccccccccchhhcCHHHHHHH
Confidence 356999999997 5667778888899999999999999888875431 1111000 000 000 00
Q ss_pred -------CCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEE
Q 043471 347 -------ENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 347 -------~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 383 (485)
-...|+|+..-.+---+.+.-+=+++.+.+|||..++
T Consensus 105 ~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 105 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 1358999987655433344445589999999998653
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=94.28 E-value=0.26 Score=43.42 Aligned_cols=102 Identities=8% Similarity=0.105 Sum_probs=70.5
Q ss_pred CEEEEECCCCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCC----CCCeEEEEccCCCCC--------CCCCCccE
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGL----KCSVEFEVADCTKKT--------YPENSFDV 352 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~----~~~i~~~~~d~~~~~--------~~~~~fD~ 352 (485)
..|+.+|||.=.-...+...-+.+++=+|. |++++.-++.+... ..+..++..|+.+.. +..+.--+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 467789999876665553222678888886 88887766666422 245677777776521 22233456
Q ss_pred EEEcccccccC--CHHHHHHHHHhcCCCCcEEEEEec
Q 043471 353 IYSRDTILHIQ--DKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 353 i~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+++-+++.|++ +...+|+.+.....||+.+++...
T Consensus 170 ~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 170 WLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77777888885 577889999999999999988743
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.21 E-value=0.068 Score=43.31 Aligned_cols=103 Identities=13% Similarity=0.039 Sum_probs=63.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcch-HHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-----CC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFT-GELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-----LT 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-----~~ 115 (485)
..+++....++|++||=+|||...+. ..+++. |+ +|+++|.+++-++.|++. +-...+...-.+.. ..
T Consensus 17 ~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~ 92 (174)
T d1p0fa2 17 GAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVICE 92 (174)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----CCcEEEcCCCchhHHHHHHHH
Confidence 45566777889999999999865543 444554 64 899999999999999885 22222221111100 00
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhccc-CcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKV-GGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~p-gG~l~~~ 158 (485)
...+.+|+|+-.- . ....+.+....+++ +|.+++.
T Consensus 93 ~~~~G~d~vid~~-----g---~~~~~~~~~~~~~~~~G~~v~v 128 (174)
T d1p0fa2 93 KTNGGVDYAVECA-----G---RIETMMNALQSTYCGSGVTVVL 128 (174)
T ss_dssp HTTSCBSEEEECS-----C---CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hcCCCCcEEEEcC-----C---CchHHHHHHHHHHHhcCceEEE
Confidence 1234688877432 1 22466666666655 5888874
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.11 E-value=0.0054 Score=50.12 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=62.4
Q ss_pred HhccCCCCCCCcEEEEcC-C-CCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-CCCCCCe
Q 043471 46 VLSLLPPYEGKTVLEFGA-G-IGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-TFSEDSV 121 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGc-G-~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~ 121 (485)
.++....+++++||=.|. | .|.....+++. |++|++++.+++..+.+++.-. . ..+ |..+... .-....+
T Consensus 19 al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa--~--~~i--~~~~~~~~~~~~~g~ 92 (171)
T d1iz0a2 19 ALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA--E--EAA--TYAEVPERAKAWGGL 92 (171)
T ss_dssp HHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC--S--EEE--EGGGHHHHHHHTTSE
T ss_pred HHHHhCCCCCCEEEEEeccccchhhhhhhhccccccccccccccccccccccccc--c--eee--ehhhhhhhhhccccc
Confidence 345567788999999884 3 35666777776 8999999999988888887421 1 111 2222100 0123569
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
|+|+-.. .+ .+....+.|+|||.++.
T Consensus 93 D~v~d~~-----G~-----~~~~~~~~l~~~G~~v~ 118 (171)
T d1iz0a2 93 DLVLEVR-----GK-----EVEESLGLLAHGGRLVY 118 (171)
T ss_dssp EEEEECS-----CT-----THHHHHTTEEEEEEEEE
T ss_pred ccccccc-----ch-----hHHHHHHHHhcCCcEEE
Confidence 9998531 21 24567889999999887
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.34 Score=39.02 Aligned_cols=95 Identities=12% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC--CCCCCCCccEEEEc
Q 043471 281 LKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK--KTYPENSFDVIYSR 356 (485)
Q Consensus 281 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~--~~~~~~~fD~i~~~ 356 (485)
.+++.+||=.|. |.|..+..+++..|++|+++.-+++..+.+++.-. . .++.-+-.+ ..+....+|.|+-.
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa----d-~vi~~~~~~~~~~l~~~~~~~vvD~ 103 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA----S-RVLPRDEFAESRPLEKQVWAGAIDT 103 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE----E-EEEEGGGSSSCCSSCCCCEEEEEES
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc----c-cccccccHHHHHHHHhhcCCeeEEE
Confidence 334457887664 45677888998889999999999999888876532 1 122221111 12344667887532
Q ss_pred ccccccCCHHHHHHHHHhcCCCCcEEEEEec
Q 043471 357 DTILHIQDKPALFKSFFKWLKPGGTVLISDY 387 (485)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 387 (485)
+. ...+....+.|+++|+++..-.
T Consensus 104 -----Vg--g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 104 -----VG--DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp -----SC--HHHHHHHHHTEEEEEEEEECCC
T ss_pred -----cc--hHHHHHHHHHhccccceEeecc
Confidence 21 3468899999999999988743
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.49 E-value=0.043 Score=44.26 Aligned_cols=101 Identities=17% Similarity=0.132 Sum_probs=64.2
Q ss_pred HhccCCCCCCCcEEEEcC--CCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeecc-CCCCCCCCCCe
Q 043471 46 VLSLLPPYEGKTVLEFGA--GIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVT-SPDLTFSEDSV 121 (485)
Q Consensus 46 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~ 121 (485)
+.+.-..+++.+||=-|+ |.|..+.-|++. |++|+++.-|++-.+.+++.-.. .+ +...|.. ........+.+
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad--~v-i~~~~~~~~~~~~~~~~gv 91 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS--EV-ISREDVYDGTLKALSKQQW 91 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS--EE-EEHHHHCSSCCCSSCCCCE
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc--ce-EeccchhchhhhcccCCCc
Confidence 333334455667887764 445666777776 99999999999888888776332 11 1111211 11112234679
Q ss_pred eEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 122 DMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 122 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
|+|+-. +.. ..+.+..+.|+|+|.+++.
T Consensus 92 d~vid~-----vgg----~~~~~~~~~l~~~G~iv~~ 119 (167)
T d1tt7a2 92 QGAVDP-----VGG----KQLASLLSKIQYGGSVAVS 119 (167)
T ss_dssp EEEEES-----CCT----HHHHHHHTTEEEEEEEEEC
T ss_pred eEEEec-----CcH----HHHHHHHHHhccCceEEEe
Confidence 998754 222 5778899999999998873
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.13 E-value=0.16 Score=40.66 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=57.5
Q ss_pred cEEEEcCCC-Cc-chHHHHhhcC--cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhhhhc
Q 043471 57 TVLEFGAGI-GR-FTGELAKKAG--HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWLLMY 132 (485)
Q Consensus 57 ~vLDiGcG~-G~-~~~~l~~~~~--~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~~~~ 132 (485)
+|+=||||. |. ++..|.+.|. +|+|+|.+++.++.+++.. .+.....+... ..+...|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~~~~~~~~~~----~~~~~~dlIila~---- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAK----VEDFSPDFVMLSS---- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGG----GGGTCCSEEEECS----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cchhhhhhhhh----hhccccccccccC----
Confidence 477788875 33 3455655564 7999999999999998852 23333333322 1234678888653
Q ss_pred cChHHHHHHHHHHHhhcccCcEEE
Q 043471 133 LSDKEVEKLAERMVKWLKVGGYIF 156 (485)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~pgG~l~ 156 (485)
+......++.++...++++..+.
T Consensus 71 -p~~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 71 -PVRTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp -CHHHHHHHHHHHHHHSCTTCEEE
T ss_pred -Cchhhhhhhhhhhcccccccccc
Confidence 44447789999999999886543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.89 E-value=0.019 Score=46.71 Aligned_cols=95 Identities=19% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCCCCcEEEEcCCCCcch-HHHHhh-c-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC--C-CCCCCCeeEEE
Q 043471 52 PYEGKTVLEFGAGIGRFT-GELAKK-A-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD--L-TFSEDSVDMMF 125 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~-~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~--~-~~~~~~~D~v~ 125 (485)
.+++.+||=+|||..... ..+++. | .+|+++|.+++-++.+++.-. ...+..+-.... . ......+|+|+
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~g~d~vi 105 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA----DHVVDARRDPVKQVMELTRGRGVNVAM 105 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC----SEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc----ceeecCcccHHHHHHHhhCCCCceEEE
Confidence 467889999999776543 455554 5 488999999999999988532 222221100000 0 01234699988
Q ss_pred hhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 126 SNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
-.. . -...++...+.|++||.+++.
T Consensus 106 d~~-----g---~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 106 DFV-----G---SQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp ESS-----C---CHHHHHHGGGGEEEEEEEEEC
T ss_pred Eec-----C---cchHHHHHHHHHhCCCEEEEE
Confidence 542 1 235788899999999999884
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.75 E-value=0.21 Score=40.38 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcch-HHHHhh-c-CcEEEEeCChHHHHHHHHHc
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFT-GELAKK-A-GHVIALDFIDSVIKKNEEVN 96 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~-~-~~v~giD~s~~~~~~a~~~~ 96 (485)
..+.+....++|+.||=+|||...+. ..+++. | .+|+++|.+++.++.|++.-
T Consensus 19 ~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G 74 (176)
T d1d1ta2 19 GAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG 74 (176)
T ss_dssp HHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred HHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence 34556677888999999999865543 444554 6 58999999999999999973
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.18 Score=40.79 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcC--CCCcchHHHHhh-cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhh
Q 043471 52 PYEGKTVLEFGA--GIGRFTGELAKK-AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNW 128 (485)
Q Consensus 52 ~~~~~~vLDiGc--G~G~~~~~l~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~ 128 (485)
.+++..||=.|. |.|..++-|++. |++|+++.-+++..+.+++.-. -..+.-+-.+..-...+..+|.|+-
T Consensus 29 ~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGa----d~vi~~~~~~~~~~l~~~~~~~vvD-- 102 (177)
T d1o89a2 29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGA----SRVLPRDEFAESRPLEKQVWAGAID-- 102 (177)
T ss_dssp CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTE----EEEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred CCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhcc----ccccccccHHHHHHHHhhcCCeeEE--
Confidence 344557886663 234455667765 9999999999999888876521 1222222111112234566888753
Q ss_pred hhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 129 LLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.+.. ..+.+..+.|+++|.++..
T Consensus 103 ---~Vgg----~~~~~~l~~l~~~Griv~~ 125 (177)
T d1o89a2 103 ---TVGD----KVLAKVLAQMNYGGCVAAC 125 (177)
T ss_dssp ---SSCH----HHHHHHHHTEEEEEEEEEC
T ss_pred ---Ecch----HHHHHHHHHhccccceEee
Confidence 2233 4688899999999999884
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=92.66 E-value=0.088 Score=42.28 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.0
Q ss_pred HHHHcCCCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCC--C-CCCCCC
Q 043471 275 FVAKLDLKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTK--K-TYPENS 349 (485)
Q Consensus 275 ~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~--~-~~~~~~ 349 (485)
+.+.-..+++..||=-|+ |-|..+..+++..|++|+++.-|++-.+.+++.-. ...+...|... . ....+.
T Consensus 15 L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGa----d~vi~~~~~~~~~~~~~~~~g 90 (167)
T d1tt7a2 15 LEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGA----SEVISREDVYDGTLKALSKQQ 90 (167)
T ss_dssp HHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTC----SEEEEHHHHCSSCCCSSCCCC
T ss_pred HHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcc----cceEeccchhchhhhcccCCC
Confidence 333334556667887774 45678888998889999999999988888877532 12121122111 1 122466
Q ss_pred ccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEEecc
Q 043471 350 FDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLISDYC 388 (485)
Q Consensus 350 fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 388 (485)
+|+|+-.-. ...+.+..+.|+|+|++++.-..
T Consensus 91 vd~vid~vg-------g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 91 WQGAVDPVG-------GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp EEEEEESCC-------THHHHHHHTTEEEEEEEEECCCS
T ss_pred ceEEEecCc-------HHHHHHHHHHhccCceEEEeecc
Confidence 898876421 34678999999999999887443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.46 E-value=0.19 Score=38.28 Aligned_cols=88 Identities=16% Similarity=0.135 Sum_probs=57.4
Q ss_pred CEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----CCCCCccEEEEcc
Q 043471 285 QKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----YPENSFDVIYSRD 357 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~i~~~~ 357 (485)
++|+=+|+ |.++..+++.+ |..|+.+|.+++.++.+++.. .+.++.+|..+.. ..-...|.+++..
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 35666666 67777777654 789999999999998887654 4678889987742 2235688888742
Q ss_pred cccccCCHHHHHHHHHhcCCCCcEE
Q 043471 358 TILHIQDKPALFKSFFKWLKPGGTV 382 (485)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~LkpgG~l 382 (485)
.- +........+.+.+.+.-.+
T Consensus 74 ~~---d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 74 GK---EEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp SC---HHHHHHHHHHHHHTTCCCEE
T ss_pred Cc---HHHHHHHHHHHHHcCCceEE
Confidence 11 11222345555667777443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=92.43 E-value=0.22 Score=39.58 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=55.9
Q ss_pred CEEEEECCCC--ChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 285 QKVLDVGCGI--GGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 285 ~~vLDiGcG~--G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
++|.=||+|. +.++..|.++ |.+|++.|.+++.++.+++.- .+.....+.+.. ...|+|+..-..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~~~-----~~~~~~~~~~~~----~~~DiIilavp~--- 67 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVERQ-----LVDEAGQDLSLL----QTAKIIFLCTPI--- 67 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTT-----SCSEEESCGGGG----TTCSEEEECSCH---
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHhh-----ccceeeeecccc----cccccccccCcH---
Confidence 4677788873 3445555554 789999999999988877642 122222222221 457988864322
Q ss_pred CCHHHHHHHHHhcCCCCcEEEE
Q 043471 363 QDKPALFKSFFKWLKPGGTVLI 384 (485)
Q Consensus 363 ~~~~~~l~~~~~~LkpgG~l~i 384 (485)
.....+++++...|+|+-.++-
T Consensus 68 ~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 68 QLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHHHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhhhhhhcccccceee
Confidence 2456788999998888886643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.42 E-value=0.083 Score=40.56 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred CCCCcchHHHHh----hcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC--CCCCCeeEEEhhhhhhccChH
Q 043471 63 AGIGRFTGELAK----KAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT--FSEDSVDMMFSNWLLMYLSDK 136 (485)
Q Consensus 63 cG~G~~~~~l~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~D~v~~~~~~~~~~~~ 136 (485)
||.|.++..+++ .|.+|+.+|.+++.++.++.. ....+.+|..+.+.. ..-...|.|++.. ++.
T Consensus 6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~-----~~~ 75 (134)
T d2hmva1 6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIVAI-----GAN 75 (134)
T ss_dssp ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHHTGGGCSEEEECC-----CSC
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhccCCccccEEEEEc-----Cch
Confidence 355677766665 489999999999999887542 356778998875421 1123577666532 221
Q ss_pred HHHHHHHHHHhhcccCcEEEEE
Q 043471 137 EVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 137 ~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
.-...+-.+.+.+.|...++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 76 IQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHhHHHHHHHHHHcCCCcEEee
Confidence 1223444444445566666553
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.19 E-value=0.2 Score=42.72 Aligned_cols=117 Identities=16% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHHHH----cCCCCCCEEEEECCCCChhHHHHhhcC----------------------------------------
Q 043471 270 ETTKEFVAK----LDLKPGQKVLDVGCGIGGGDFYMADKF---------------------------------------- 305 (485)
Q Consensus 270 ~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~l~~~~---------------------------------------- 305 (485)
.....++.. .....+..++|.-||+|.+.+..+...
T Consensus 33 ~Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~ 112 (249)
T d1o9ga_ 33 RLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 112 (249)
T ss_dssp HHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence 344444443 344556689999999999887654411
Q ss_pred -CCEEEEEeCCHHHHHHHH---HHh--cCCCCCeEEEEccCCCCC-----CCCCCccEEEEcccccc-c---C-----CH
Q 043471 306 -DVHVVGIDLSINMISFAL---ERA--IGLKCSVEFEVADCTKKT-----YPENSFDVIYSRDTILH-I---Q-----DK 365 (485)
Q Consensus 306 -~~~v~g~D~s~~~~~~a~---~~~--~~~~~~i~~~~~d~~~~~-----~~~~~fD~i~~~~~~~~-~---~-----~~ 365 (485)
...+.|.|+++.+++.|+ +++ .++...+.+...|+.+.. .+....++|+++...-. + . ..
T Consensus 113 ~~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~ 192 (249)
T d1o9ga_ 113 EQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 192 (249)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred ccCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHH
Confidence 024678888899888874 343 366778999999986532 12356799999865432 1 1 14
Q ss_pred HHHHHHHHhcCCCCcEEEEEe
Q 043471 366 PALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 366 ~~~l~~~~~~LkpgG~l~i~~ 386 (485)
..+...+.+++.....++++.
T Consensus 193 ~~~~~~l~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 193 AGLLRSLASALPAHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHccCCCCcEEEEeC
Confidence 456667888886666666663
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.19 E-value=0.59 Score=37.87 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=64.6
Q ss_pred HHHHcCCCCC--CEEEEEC--CCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----
Q 043471 275 FVAKLDLKPG--QKVLDVG--CGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----- 344 (485)
Q Consensus 275 ~~~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----- 344 (485)
+.+...++++ ..||=.| .|.|..+..+++..|+ .|+++..+++......+.+. .. .++ |..+..
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---ad-~vi--~~~~~~~~~~~ 93 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---FD-AAV--NYKTGNVAEQL 93 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---CS-EEE--ETTSSCHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---ce-EEe--eccchhHHHHH
Confidence 4455567766 7799887 3678899999998876 67778888776655544331 11 111 222211
Q ss_pred --CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 345 --YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 345 --~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..+..+|+|+-.-. ...++...+.|+|||+++..
T Consensus 94 ~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 94 REACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence 11356999986432 34678999999999999875
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.19 E-value=0.17 Score=46.37 Aligned_cols=82 Identities=11% Similarity=0.170 Sum_probs=54.9
Q ss_pred ccCCCCCCCcEEEEcCCCCcchHHHHhh---------cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCC
Q 043471 48 SLLPPYEGKTVLEFGAGIGRFTGELAKK---------AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSE 118 (485)
Q Consensus 48 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~ 118 (485)
+.+..++...|+|+|+|+|.++.-+.+. ..+++-+|.|+.+.+.-+++.....++.++. ++.. ++
T Consensus 73 ~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~~-~~~~--~~--- 146 (365)
T d1zkda1 73 KAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHD-SFED--VP--- 146 (365)
T ss_dssp HHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEES-SGGG--SC---
T ss_pred HHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceecc-Chhh--cc---
Confidence 3455555678999999999998655442 2358999999998887777766545665542 3333 21
Q ss_pred CCeeEEEhhhhhhccCh
Q 043471 119 DSVDMMFSNWLLMYLSD 135 (485)
Q Consensus 119 ~~~D~v~~~~~~~~~~~ 135 (485)
...-+|+|+..+--+|-
T Consensus 147 ~~~g~iiaNE~fDAlPv 163 (365)
T d1zkda1 147 EGPAVILANEYFDVLPI 163 (365)
T ss_dssp CSSEEEEEESSGGGSCC
T ss_pred cCCeEEEecccCccccc
Confidence 22357888877766663
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.04 Score=50.05 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=74.6
Q ss_pred CCcEEEEcCCCCcchHHHHhhcC--c-EEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC-CCCCCeeEEEhhhhh
Q 043471 55 GKTVLEFGAGIGRFTGELAKKAG--H-VIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT-FSEDSVDMMFSNWLL 130 (485)
Q Consensus 55 ~~~vLDiGcG~G~~~~~l~~~~~--~-v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~D~v~~~~~~ 130 (485)
+.+|+|+-||.|.++.-|.+.|. + |.++|+.+.+.+..+.+. ++..++.+|+.+.... ++...+|+++.....
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPC 78 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhHcCCCCccEEEeeccc
Confidence 56899999999999988877775 3 679999999998888765 4567778888874321 223468998864322
Q ss_pred hccC--------hHHHHHHHHHHHhhc-----ccCcEEEEEeccCCCCCccccCCCCCCCCChhHHHHHhhhccee
Q 043471 131 MYLS--------DKEVEKLAERMVKWL-----KVGGYIFFRESCFHQSGDSKRKHNPTHYREPRFYSKVFKECQIQ 193 (485)
Q Consensus 131 ~~~~--------~~~~~~~l~~~~~~L-----~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
..++ ++++...+.++.+++ +|. +++-|.+..... ....+.+...|++.|+.
T Consensus 79 q~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~----------~~~~~~i~~~l~~~GY~ 142 (343)
T d1g55a_ 79 QPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEV----------SSTRDLLIQTIENCGFQ 142 (343)
T ss_dssp -----------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGG----------SHHHHHHHHHHHHTTEE
T ss_pred ccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCccc----------chhhHHHHhhhhccccc
Confidence 2211 112334445555544 464 344455432110 11345677778887763
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.95 E-value=0.17 Score=45.08 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=52.0
Q ss_pred CcEEEEcCCCCcchHHHHhhcCcE-EEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 56 KTVLEFGAGIGRFTGELAKKAGHV-IALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~~~~~v-~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+|||+=||.|.++.-|.+.|.++ .++|+.+.+.+..+.+.. -..+.+|+.+++.. ....+|+++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~-~~~~~dll~~g 68 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSD-EFPKCDGIIGG 68 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGG-GSCCCSEEEEC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHh-HcccccEEeec
Confidence 479999999999999998888764 599999999988777653 35678999885421 23468999854
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.87 E-value=0.14 Score=38.91 Aligned_cols=86 Identities=15% Similarity=0.051 Sum_probs=60.8
Q ss_pred CCCCcchHHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC--CCCCCeeEEEhhhhhhccChHHH
Q 043471 63 AGIGRFTGELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT--FSEDSVDMMFSNWLLMYLSDKEV 138 (485)
Q Consensus 63 cG~G~~~~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~D~v~~~~~~~~~~~~~~ 138 (485)
||.|..+..+++. +.+|+.+|.+++..+..+. .++.++.+|..+.+.. ..-.+.+.+++.. +++..
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-----~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~d~~ 75 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ESDSE 75 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-----TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SSHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-----cCccccccccCCHHHHHHhhhhcCcEEEEec-----cchhh
Confidence 7889999999886 7789999999999887765 3688999998764311 2235677777632 23333
Q ss_pred HHHHHHHHhhcccCcEEEEE
Q 043471 139 EKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 139 ~~~l~~~~~~L~pgG~l~~~ 158 (485)
.-.+-...|-+.|...++..
T Consensus 76 n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEE
T ss_pred hHHHHHHHHHHCCCceEEEE
Confidence 44555667778888877664
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.83 E-value=0.4 Score=38.40 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=64.6
Q ss_pred HHHHHcCCCCCCEEEEECCCCC-hhHHHHhhcCC-CEEEEEeCCHHHHHHHHHHhcCCCCCeEEEE-ccCCCC------C
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIG-GGDFYMADKFD-VHVVGIDLSINMISFALERAIGLKCSVEFEV-ADCTKK------T 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~-~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~-~d~~~~------~ 344 (485)
.+++...+++|++||=+|+|.+ ..+..+++..+ .+|+++|.+++-.+.+++.-. ...+. .+..+. .
T Consensus 19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga-----~~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA-----TECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC-----eeEEecCCchhHHHHHHHH
Confidence 3456667999999999999654 34555565655 699999999999998877532 11221 121111 0
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCC-cEEEEE
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPG-GTVLIS 385 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 385 (485)
...+.+|+|+-.... ...++.....+++| |.+++.
T Consensus 94 ~~~~G~D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 94 MSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp HTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEEC
T ss_pred HhcCCCCEEEecCCc------hhHHHHHHHHHhcCCcceEEe
Confidence 123568998875432 34567777788886 555554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.72 E-value=0.19 Score=43.70 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+.+|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+.....+.+.++.+|+.+
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~ 65 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK 65 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC
Confidence 468889999988773 34667777999999999999988877776655678888888876
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.02 E-value=0.28 Score=39.43 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=63.0
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcc-hHHHHhh-c-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEe-eccCCC----CC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRF-TGELAKK-A-GHVIALDFIDSVIKKNEEVNGHFENVKFMCA-DVTSPD----LT 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~-~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~----~~ 115 (485)
..+.+....++|++||=+|||.+.. ...+++. + .+|+++|.+++-.+.+++.-. ...+.. +..+.. ..
T Consensus 18 ~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~ 93 (176)
T d2jhfa2 18 GSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTE 93 (176)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC----eeEEecCCchhHHHHHHHH
Confidence 4556677788999999999975543 3444444 4 599999999999999988632 122211 111100 00
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccC-cEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVG-GYIFF 157 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~ 157 (485)
...+.+|+|+-... ....++.+...+++| |.+++
T Consensus 94 ~~~~G~D~vid~~G--------~~~~~~~a~~~~~~~~g~~~~ 128 (176)
T d2jhfa2 94 MSNGGVDFSFEVIG--------RLDTMVTALSCCQEAYGVSVI 128 (176)
T ss_dssp HTTSCBSEEEECSC--------CHHHHHHHHHHBCTTTCEEEE
T ss_pred HhcCCCCEEEecCC--------chhHHHHHHHHHhcCCcceEE
Confidence 12357899885421 224667777788886 55555
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.98 E-value=0.083 Score=43.33 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=61.6
Q ss_pred HhccCCCCCC--CcEEEEc--CCCCcchHHHHhh-cC-cEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC----
Q 043471 46 VLSLLPPYEG--KTVLEFG--AGIGRFTGELAKK-AG-HVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT---- 115 (485)
Q Consensus 46 ~~~~~~~~~~--~~vLDiG--cG~G~~~~~l~~~-~~-~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~---- 115 (485)
+.+....++| ..||=.| .|.|..+..+++. |+ .|+++..+++......+..+. -.. .|..+.++.
T Consensus 20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga---d~v--i~~~~~~~~~~~~ 94 (187)
T d1vj1a2 20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF---DAA--VNYKTGNVAEQLR 94 (187)
T ss_dssp HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC---SEE--EETTSSCHHHHHH
T ss_pred HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc---eEE--eeccchhHHHHHH
Confidence 3444445555 6799877 5778888999986 76 577788887776655554432 111 122221110
Q ss_pred -CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 116 -FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 116 -~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
..+..+|+|+-.. .. ..++...+.|+|||+++.
T Consensus 95 ~~~~~GvDvv~D~v-----Gg----~~~~~~~~~l~~~G~iv~ 128 (187)
T d1vj1a2 95 EACPGGVDVYFDNV-----GG----DISNTVISQMNENSHIIL 128 (187)
T ss_dssp HHCTTCEEEEEESS-----CH----HHHHHHHTTEEEEEEEEE
T ss_pred HHhccCceEEEecC-----Cc----hhHHHHhhhccccccEEE
Confidence 1134699998542 22 467889999999999986
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.33 Score=43.53 Aligned_cols=124 Identities=17% Similarity=0.147 Sum_probs=75.1
Q ss_pred CCEEEEECCCCChhHHHHhhcCCC---EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC---CCCCccEEEEcc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKFDV---HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY---PENSFDVIYSRD 357 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~~~---~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~---~~~~fD~i~~~~ 357 (485)
..+|+|+-||.|.+..-+.+. |. .+.++|+.+.+++..+.+.. ...+...|+.++.. +...+|+++...
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~~----~~~~~~~di~~~~~~~~~~~~~Dll~ggp 76 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP----HTQLLAKTIEGITLEEFDRLSFDMILMSP 76 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT----TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHCC----CCCcccCchhhCCHhHcCCCCccEEEeec
Confidence 458999999999988877655 43 36789999999999888864 34566778776532 223689999865
Q ss_pred ccccc---------CC-HHHHHHHHHhcC-----CCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhC
Q 043471 358 TILHI---------QD-KPALFKSFFKWL-----KPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDA 422 (485)
Q Consensus 358 ~~~~~---------~~-~~~~l~~~~~~L-----kpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 422 (485)
....+ .| ...++-++.+++ ||- .+++....... . ....+.+.+.|++.
T Consensus 77 PCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk-~~i~ENV~~l~---~-------------~~~~~~i~~~l~~~ 139 (343)
T d1g55a_ 77 PCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK-YILLENVKGFE---V-------------SSTRDLLIQTIENC 139 (343)
T ss_dssp C------------------CHHHHHHHHGGGCSSCCS-EEEEEEETTGG---G-------------SHHHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccchhhhhHhhhcCCCc-eeeeeccCCcc---c-------------chhhHHHHhhhhcc
Confidence 54433 11 223444444443 464 34444322110 0 01135678889999
Q ss_pred CCeEEEE
Q 043471 423 GFVDIIA 429 (485)
Q Consensus 423 Gf~~~~~ 429 (485)
|+.+...
T Consensus 140 GY~v~~~ 146 (343)
T d1g55a_ 140 GFQYQEF 146 (343)
T ss_dssp TEEEEEE
T ss_pred cccccee
Confidence 9987543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.77 E-value=0.25 Score=39.65 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCcch-HHHHhh--cCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCC-----CC
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGRFT-GELAKK--AGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPD-----LT 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~~~-~~l~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-----~~ 115 (485)
..+.+....+++++||=+|||.+..+ ..+++. +.+|+++|.+++-++.+++.= --.++...-.+.. ..
T Consensus 18 ~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G----Ad~~in~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 18 GAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG----ATDFVNPNDHSEPISQVLSK 93 (175)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT----CCEEECGGGCSSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC----CcEEEcCCCcchhHHHHHHh
Confidence 34556677889999999999986654 334443 458999999999999998852 1222221111100 00
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
...+.+|+|+-.. . ....+..+.+++++||.+++
T Consensus 94 ~~~~G~d~vid~~-----G---~~~~~~~a~~~~~~g~~~~~ 127 (175)
T d1cdoa2 94 MTNGGVDFSLECV-----G---NVGVMRNALESCLKGWGVSV 127 (175)
T ss_dssp HHTSCBSEEEECS-----C---CHHHHHHHHHTBCTTTCEEE
T ss_pred hccCCcceeeeec-----C---CHHHHHHHHHHhhCCCccee
Confidence 1124688887432 1 12456677777666644433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.69 E-value=0.035 Score=45.02 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=37.4
Q ss_pred CCCCCCCcEEEEcCCCCcc-hHHHHhh-cCcEEEEeCChHHHHHHHHHcC
Q 043471 50 LPPYEGKTVLEFGAGIGRF-TGELAKK-AGHVIALDFIDSVIKKNEEVNG 97 (485)
Q Consensus 50 ~~~~~~~~vLDiGcG~G~~-~~~l~~~-~~~v~giD~s~~~~~~a~~~~~ 97 (485)
++--++.+||=||+|+-.. +...|.. |++|+.+|++++.++..++...
T Consensus 24 ~g~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 24 AGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp TEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred cCCcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 3334678999999997654 5555554 9999999999999999888643
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.50 E-value=0.41 Score=38.09 Aligned_cols=88 Identities=20% Similarity=0.181 Sum_probs=56.2
Q ss_pred EEEEECCCC-C-hhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCCCCCccEEEEccccccc
Q 043471 286 KVLDVGCGI-G-GGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYPENSFDVIYSRDTILHI 362 (485)
Q Consensus 286 ~vLDiGcG~-G-~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~~~~fD~i~~~~~~~~~ 362 (485)
+|+=||||. | .++..|.+.. ..+|+|+|.+++.++.+++.- .+.....+.... .....|+|+..-..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-----~~~~~~~~~~~~--~~~~~dlIila~p~--- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-----IIDEGTTSIAKV--EDFSPDFVMLSSPV--- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-----SCSEEESCGGGG--GGTCCSEEEECSCH---
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-----cchhhhhhhhhh--hccccccccccCCc---
Confidence 588899985 3 3444555442 358999999999999988752 122222222221 23457888875433
Q ss_pred CCHHHHHHHHHhcCCCCcEEE
Q 043471 363 QDKPALFKSFFKWLKPGGTVL 383 (485)
Q Consensus 363 ~~~~~~l~~~~~~LkpgG~l~ 383 (485)
.....++.++...++++..++
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEE
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 245677889999999886554
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=90.45 E-value=0.2 Score=44.81 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCCCcchHHHHhhcCc-EEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhh
Q 043471 54 EGKTVLEFGAGIGRFTGELAKKAGH-VIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSN 127 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~ 127 (485)
.+.+|||+=||.|.++..|.+.|.+ |.++|+.+.+++..+.+.... ..+|+.+++.. ....+|+++..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~-~~~~~Dll~gg 78 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEK-TIPDHDILCAG 78 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGG-GSCCCSEEEEE
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchh-hcceeeeeecc
Confidence 5789999999999999999888875 567899999999888876431 25788775422 22468998854
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.25 E-value=0.39 Score=38.43 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=64.3
Q ss_pred HHHhccCCCCCCCcEEEEcCCCCc-chHHHHhh-c-CcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC-----C
Q 043471 44 PEVLSLLPPYEGKTVLEFGAGIGR-FTGELAKK-A-GHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL-----T 115 (485)
Q Consensus 44 ~~~~~~~~~~~~~~vLDiGcG~G~-~~~~l~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~-----~ 115 (485)
..+.+....++|++||=+|||... .+..+++. | ..|+++|.+++..+.+++.=. ...+...-...+. .
T Consensus 18 ~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa----~~~i~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 18 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIE 93 (176)
T ss_dssp HHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEECGGGCSSCHHHHHHH
T ss_pred HHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC----cEEEeCCchhhHHHHHHHH
Confidence 345566778899999999997322 33444554 6 479999999999999887521 1222111000000 0
Q ss_pred CCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 116 FSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 116 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
...+.+|+|+-.. . -...++.+..++++||.+++.
T Consensus 94 ~~~~g~D~vid~~-----G---~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 94 MTDGGVDYSFECI-----G---NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HTTSCBSEEEECS-----C---CHHHHHHHHHTBCTTTCEEEE
T ss_pred HcCCCCcEeeecC-----C---CHHHHHHHHHhhcCCceeEEE
Confidence 1135689988542 1 225778899999999877653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.05 E-value=0.23 Score=40.59 Aligned_cols=102 Identities=9% Similarity=0.066 Sum_probs=58.1
Q ss_pred HHHcCCCCCCEEEEECCC---CChhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEc---cCCCCC-----
Q 043471 276 VAKLDLKPGQKVLDVGCG---IGGGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVA---DCTKKT----- 344 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~---d~~~~~----- 344 (485)
.+...++||.+||=+.+| .|..+..+++..|++++++--+++..+...+.+..++... ++.. +..+..
T Consensus 21 ~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v~~ 99 (189)
T d1gu7a2 21 THYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTIKE 99 (189)
T ss_dssp HSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHHHH
T ss_pred HHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHHHH
Confidence 344578899888887433 3566778888889999988544333332222222222111 2221 211110
Q ss_pred ---CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCCcEEEEE
Q 043471 345 ---YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 345 ---~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 385 (485)
.....+|+|+-. +. ...+..+.+.|+|||+++..
T Consensus 100 ~~~~~g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 100 WIKQSGGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp HHHHHTCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEEC
T ss_pred HHhhccCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEE
Confidence 012458888753 21 33467888999999998875
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=89.82 E-value=0.54 Score=41.59 Aligned_cols=70 Identities=11% Similarity=0.075 Sum_probs=52.9
Q ss_pred CEEEEECCCCChhHHHHhhcCCCE-EEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCccEEEEccccc
Q 043471 285 QKVLDVGCGIGGGDFYMADKFDVH-VVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTIL 360 (485)
Q Consensus 285 ~~vLDiGcG~G~~~~~l~~~~~~~-v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 360 (485)
++|||+=||.|.+..-+.+. |.+ +.++|+++.+.+..+.+.. -....+|+.++... -...|+++......
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~~-----~~~~~~Di~~~~~~~~~~~dll~~g~PCq 72 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNHS-----AKLIKGDISKISSDEFPKCDGIIGGPPCQ 72 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHCC-----SEEEESCTTTSCGGGSCCCSEEEECCCCT
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHCC-----CCCccCChhhCCHhHcccccEEeeccccc
Confidence 47999999999998887765 654 5599999999998888863 35677898887422 23589999864443
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=89.68 E-value=0.98 Score=39.54 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=71.2
Q ss_pred CcEEEEcCCCCcchHHHHh-hcCcEEEEeCChHHHHHHHHHcC---C--CCCeEEEEeeccCCCCC-------CCCCCee
Q 043471 56 KTVLEFGAGIGRFTGELAK-KAGHVIALDFIDSVIKKNEEVNG---H--FENVKFMCADVTSPDLT-------FSEDSVD 122 (485)
Q Consensus 56 ~~vLDiGcG~G~~~~~l~~-~~~~v~giD~s~~~~~~a~~~~~---~--~~~~~~~~~d~~~~~~~-------~~~~~~D 122 (485)
..|+.+|||-=.-...|.. .+..++-+|. |++++..++.+. . ..+...+..|+.+. +. +..+.--
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~-~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQD-WPPALRSAGFDPSART 168 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSC-HHHHHHHTTCCTTSCE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccch-HHHHHHhcCCCCCCCE
Confidence 4677799887776655532 2557777774 677765555432 1 13567777777641 21 2223344
Q ss_pred EEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEec
Q 043471 123 MMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRES 160 (485)
Q Consensus 123 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (485)
++++-++++|++.+...+.++.+.+...||+.|++...
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 67788899999998899999999999999999998644
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.58 E-value=0.99 Score=38.56 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCC----------CCCC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKT----------YPEN 348 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~----------~~~~ 348 (485)
++.+|=-|++.| ++..+++++ |++|+.++.+++.++.+.+.+... ..++.++.+|+.+.. -.-+
T Consensus 10 ~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 668999998766 444444433 899999999999888877666532 346778889997732 0025
Q ss_pred CccEEEEccccccc
Q 043471 349 SFDVIYSRDTILHI 362 (485)
Q Consensus 349 ~fD~i~~~~~~~~~ 362 (485)
..|+++.+....+.
T Consensus 89 ~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 89 GVDICINNAGLARP 102 (257)
T ss_dssp CCSEEEECCCCCCC
T ss_pred CCCEEEecccccCC
Confidence 68999887655443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.23 E-value=0.3 Score=41.91 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=47.8
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCC
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSP 112 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 112 (485)
.+|+++|=-|++.| .++..|++.|++|+.+|.+++.++.+.+.....+++.++.+|+.+.
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDE 66 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCH
Confidence 45788888887776 2456777789999999999999888777766556889999998863
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.13 E-value=0.53 Score=40.83 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCEEEEE-CCCCChhHH----HHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC--------C--CCC
Q 043471 284 GQKVLDV-GCGIGGGDF----YMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT--------Y--PEN 348 (485)
Q Consensus 284 ~~~vLDi-GcG~G~~~~----~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~--------~--~~~ 348 (485)
|+||-=| |++. .++. .|++..+.+|+.++.+++.++.+.+.+...+.++.++.+|+.+.. . .-+
T Consensus 2 g~rVAlVTGas~-GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g 80 (275)
T d1wmaa1 2 GIHVALVTGGNK-GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 80 (275)
T ss_dssp CCCEEEESSCSS-HHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCeEEEECCCCC-HHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence 5677444 5444 4444 444443679999999999998888877655667889999997742 0 125
Q ss_pred CccEEEEcccccccC---C----------------HHHHHHHHHhcCCCCcEEEEE
Q 043471 349 SFDVIYSRDTILHIQ---D----------------KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~---~----------------~~~~l~~~~~~LkpgG~l~i~ 385 (485)
..|+++.+..+.+.. + .-.+.+.+...|+++|+++..
T Consensus 81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni 136 (275)
T d1wmaa1 81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 136 (275)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 799999987664331 1 113456677788999998765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=87.85 E-value=0.47 Score=40.84 Aligned_cols=59 Identities=27% Similarity=0.288 Sum_probs=45.9
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~ 111 (485)
.+|+++|=-|.+.|. ++..|++.|++|+.+|.+++.++.+.+..... .++.++.+|+.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~ 65 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTS 65 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 468889988987763 45777788999999999999888777654332 478888999876
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.43 E-value=0.51 Score=40.15 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCC----CCCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDL----TFSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~D~v~ 125 (485)
.+|+++|=-|++.| .++..|++.|++|+.+|.+++.++...+.. +++..+++|+.+.+. --.-++.|+++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 46889999998877 455777788999999999999888776654 467888888876310 01125677776
Q ss_pred hhh
Q 043471 126 SNW 128 (485)
Q Consensus 126 ~~~ 128 (485)
.+.
T Consensus 82 nnA 84 (244)
T d1pr9a_ 82 NNA 84 (244)
T ss_dssp ECC
T ss_pred ecc
Confidence 543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.31 E-value=0.32 Score=41.88 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=44.5
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~ 111 (485)
.+++.+|=-|++.|. ++..|++.|++|+.++.+++.++.+.+.+.. ..++.++++|+.+
T Consensus 8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~ 72 (257)
T d1xg5a_ 8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN 72 (257)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC
Confidence 457889999988873 4567777899999999999888776554321 2367888889876
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.25 E-value=0.44 Score=40.60 Aligned_cols=59 Identities=22% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcC-CCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNG-HFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~ 111 (485)
..|+.+|=-|++.|. ++..|+++|.+|+.+|.+++.++...+... ..+++.++.+|+++
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~ 67 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN 67 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC
Confidence 457888888998883 567788889999999999988876655432 22478888888876
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.87 E-value=0.55 Score=39.96 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=44.4
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.| .++..|++.|++|+.+|.+++.++...+... +++.++++|+.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~ 63 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQ 63 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh--CcceEEEeecCC
Confidence 46788999998877 3556777889999999999988877766553 467778887765
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.71 E-value=0.41 Score=36.31 Aligned_cols=83 Identities=8% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCC----CCCCccEEEEcccccccCC-
Q 043471 293 GIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTY----PENSFDVIYSRDTILHIQD- 364 (485)
Q Consensus 293 G~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~----~~~~fD~i~~~~~~~~~~~- 364 (485)
|.|.++..+++.+ |..|+.+|.+++.++.++.. ....+.+|..+... .-...|.|++... .+
T Consensus 7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~----~~~ 76 (134)
T d2hmva1 7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------ATHAVIANATEENELLSLGIRNFEYVIVAIG----ANI 76 (134)
T ss_dssp CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------CSEEEECCTTCTTHHHHHTGGGCSEEEECCC----SCH
T ss_pred CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------CCcceeeecccchhhhccCCccccEEEEEcC----chH
Confidence 5567777777654 78999999999998887532 34567788876531 1235676665321 12
Q ss_pred HHHHHHHHHhcCCCCcEEEEE
Q 043471 365 KPALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 365 ~~~~l~~~~~~LkpgG~l~i~ 385 (485)
....+-.+.+.+.|...++..
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEE
T ss_pred HhHHHHHHHHHHcCCCcEEee
Confidence 223334444445566665544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=0.49 Score=36.87 Aligned_cols=93 Identities=9% Similarity=0.027 Sum_probs=56.5
Q ss_pred cEEEEcCCCCcchHHHHh----hcCcEEEEeCChHHHH-HHHHHcCCCCCeEEEEeeccCCCCC--CCCCCeeEEEhhhh
Q 043471 57 TVLEFGAGIGRFTGELAK----KAGHVIALDFIDSVIK-KNEEVNGHFENVKFMCADVTSPDLT--FSEDSVDMMFSNWL 129 (485)
Q Consensus 57 ~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~~~-~a~~~~~~~~~~~~~~~d~~~~~~~--~~~~~~D~v~~~~~ 129 (485)
.|+=+ |.|..+..+++ .+.+|+.+|.+++... ...+... .++.++.+|..+.+.. ..-+..|.|++..
T Consensus 5 HiII~--G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~- 79 (153)
T d1id1a_ 5 HFIVC--GHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRAILALS- 79 (153)
T ss_dssp CEEEE--CCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSEEEECS-
T ss_pred EEEEE--CCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--CCcEEEEccCcchHHHHHhccccCCEEEEcc-
Confidence 34444 55677666655 4889999999986543 3333222 4789999998874311 1234678777642
Q ss_pred hhccChHHHHHHHHHHHhhcccCcEEEEE
Q 043471 130 LMYLSDKEVEKLAERMVKWLKVGGYIFFR 158 (485)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 158 (485)
+++.....+....+-+.|...++..
T Consensus 80 ----~~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 80 ----DNDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp ----SCHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred ----ccHHHHHHHHHHHHHhCCCCceEEE
Confidence 2232334445566677788777664
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=86.55 E-value=0.43 Score=41.04 Aligned_cols=58 Identities=24% Similarity=0.195 Sum_probs=44.8
Q ss_pred CCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccC
Q 043471 54 EGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTS 111 (485)
Q Consensus 54 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~ 111 (485)
+|+++|=.|+..| .++..|++.|++|+.++.+++.++.+.+..... .++.++.+|+.+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~ 66 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS 66 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC
Confidence 6889999999877 345677778999999999998887766654322 467888888876
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=86.24 E-value=0.61 Score=39.85 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=44.4
Q ss_pred CCCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC-CCeEEEEeeccC
Q 043471 52 PYEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF-ENVKFMCADVTS 111 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~~~~d~~~ 111 (485)
..+++.+|=-|++.| .++..|++.|++|+.+|.+++.++.+.+.+... .++.++.+|+++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~ 70 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK 70 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC
Confidence 346778888898766 234566677999999999998888766654332 478888888876
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.21 E-value=0.77 Score=39.13 Aligned_cols=56 Identities=27% Similarity=0.337 Sum_probs=44.5
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.| .++..|++.|++|+.+|.+++.++...+.. +++.++.+|+++
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~ 62 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQ 62 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEccCCC
Confidence 46889999998877 345677778999999999999888777654 467888888765
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.98 E-value=0.49 Score=40.99 Aligned_cols=76 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred CCCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCC----CCeEEEEeeccCCCC--------CC
Q 043471 52 PYEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHF----ENVKFMCADVTSPDL--------TF 116 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~----~~~~~~~~d~~~~~~--------~~ 116 (485)
..+|+++|=-|++.| .++..|++.|++|+.+|.+++.++.+.+..... .++.++++|+.+.+- .-
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 356888999998777 345777788999999999999888776654321 368899999886310 00
Q ss_pred CCCCeeEEEhh
Q 043471 117 SEDSVDMMFSN 127 (485)
Q Consensus 117 ~~~~~D~v~~~ 127 (485)
.-+..|+++.+
T Consensus 82 ~~g~iDilvnn 92 (272)
T d1xkqa_ 82 QFGKIDVLVNN 92 (272)
T ss_dssp HHSCCCEEEEC
T ss_pred HhCCceEEEeC
Confidence 12567877755
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=85.77 E-value=0.57 Score=37.55 Aligned_cols=92 Identities=20% Similarity=0.258 Sum_probs=59.2
Q ss_pred CcEEEEcCCCCcc--hHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeE------EEEeeccCCCCCCCCCCeeEE
Q 043471 56 KTVLEFGAGIGRF--TGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVK------FMCADVTSPDLTFSEDSVDMM 124 (485)
Q Consensus 56 ~~vLDiGcG~G~~--~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~------~~~~d~~~~~~~~~~~~~D~v 124 (485)
++|-=||+|.-.. +..|+++|++|+.+|.+++.++..++.-.. .+... ....|..+ .-...|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-----~~~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-----AVKDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-----HHTTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-----HhcCCCEE
Confidence 4677788887654 467778899999999999988877764210 01111 11111111 01468888
Q ss_pred EhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 125 FSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+..- +....+.+++++...|+++-.+++
T Consensus 77 ii~v-----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 77 LIVV-----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EECS-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred EEEE-----chhHHHHHHHHhhhccCCCCEEEE
Confidence 8642 223366899999999999887654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=85.55 E-value=0.91 Score=36.71 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=57.0
Q ss_pred HHhccCCCCCCCcEEEEcCCCC---cchHHHHhh-cCcEEEEeCCh----HHHHHHHHHcCCCCCeEEEEee---ccCCC
Q 043471 45 EVLSLLPPYEGKTVLEFGAGIG---RFTGELAKK-AGHVIALDFID----SVIKKNEEVNGHFENVKFMCAD---VTSPD 113 (485)
Q Consensus 45 ~~~~~~~~~~~~~vLDiGcG~G---~~~~~l~~~-~~~v~giD~s~----~~~~~a~~~~~~~~~~~~~~~d---~~~~~ 113 (485)
.+.+.....+|.+||=+.+|+| ..+..+++. |++|+++--++ +..+.+++. +--..+..+ ..++.
T Consensus 19 ~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~l----Gad~vi~~~~~~~~~~~ 94 (189)
T d1gu7a2 19 MLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKEL----GATQVITEDQNNSREFG 94 (189)
T ss_dssp HHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHH----TCSEEEEHHHHHCGGGH
T ss_pred HHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhc----cccEEEeccccchhHHH
Confidence 4445566778888888855444 455667765 99999884443 334444443 211222221 11100
Q ss_pred -----C-CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEE
Q 043471 114 -----L-TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFF 157 (485)
Q Consensus 114 -----~-~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 157 (485)
+ ....+.+|+|+-. +.. ..+....+.|+|+|.++.
T Consensus 95 ~~v~~~~~~~g~~vdvv~D~-----vg~----~~~~~~~~~l~~~G~~v~ 135 (189)
T d1gu7a2 95 PTIKEWIKQSGGEAKLALNC-----VGG----KSSTGIARKLNNNGLMLT 135 (189)
T ss_dssp HHHHHHHHHHTCCEEEEEES-----SCH----HHHHHHHHTSCTTCEEEE
T ss_pred HHHHHHHhhccCCceEEEEC-----CCc----chhhhhhhhhcCCcEEEE
Confidence 0 0012468998843 232 355677899999999886
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.43 E-value=1.1 Score=37.93 Aligned_cols=79 Identities=19% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCEEEEECCCCCh---hHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----------CCCCC
Q 043471 283 PGQKVLDVGCGIGG---GDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----------YPENS 349 (485)
Q Consensus 283 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 349 (485)
.|+.+|=-|++.|. ++..+++. |++|+.+|.+++.++...+.+...+.++....+|+.+.. -..+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 46788888887762 44455555 899999999999988888777766678889999998742 01356
Q ss_pred ccEEEEccccccc
Q 043471 350 FDVIYSRDTILHI 362 (485)
Q Consensus 350 fD~i~~~~~~~~~ 362 (485)
.|+++.+..+.+.
T Consensus 85 idilinnag~~~~ 97 (244)
T d1yb1a_ 85 VSILVNNAGVVYT 97 (244)
T ss_dssp CSEEEECCCCCCC
T ss_pred CceeEeecccccc
Confidence 8998887666544
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=85.27 E-value=0.89 Score=38.47 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=44.7
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+++|=.|++.|. ++..|+++|++|+.++.+.+.++...+..+ +++.++++|+.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~ 62 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE--AEAIAVVADVSD 62 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC--SSEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CceEEEEecCCC
Confidence 468889999988763 456777779999999999988776666543 578888999876
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=85.20 E-value=0.67 Score=34.87 Aligned_cols=85 Identities=9% Similarity=0.055 Sum_probs=56.8
Q ss_pred CCCChhHHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----CCCCCccEEEEcccccccCCHH
Q 043471 292 CGIGGGDFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----YPENSFDVIYSRDTILHIQDKP 366 (485)
Q Consensus 292 cG~G~~~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----~~~~~fD~i~~~~~~~~~~~~~ 366 (485)
||.|..+..+++.+ +..++.+|.++..++..+.. .+.++.+|..+.. ..-+..+.+++... -+...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~---~d~~n 76 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS------GANFVHGDPTRVSDLEKANVRGARAVIVNLE---SDSET 76 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT------TCEEEESCTTSHHHHHHTTCTTCSEEEECCS---SHHHH
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc------CccccccccCCHHHHHHhhhhcCcEEEEecc---chhhh
Confidence 56678899998877 55788999999988877543 5788999987632 22356777776321 11122
Q ss_pred HHHHHHHhcCCCCcEEEEE
Q 043471 367 ALFKSFFKWLKPGGTVLIS 385 (485)
Q Consensus 367 ~~l~~~~~~LkpgG~l~i~ 385 (485)
..+-...|.+.|...++..
T Consensus 77 ~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 77 IHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp HHHHHHHHHHCSSSCEEEE
T ss_pred HHHHHHHHHHCCCceEEEE
Confidence 2345556778888776665
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.13 E-value=0.59 Score=42.83 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=38.1
Q ss_pred CCCCCCcEEEEcCCCCcchHHHHhh----cCcEEEEeCChHHHHHHHHHc
Q 043471 51 PPYEGKTVLEFGAGIGRFTGELAKK----AGHVIALDFIDSVIKKNEEVN 96 (485)
Q Consensus 51 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~~v~giD~s~~~~~~a~~~~ 96 (485)
...++..++|||+-.|..+..+++. +.+|+++|+++...+..++..
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi 258 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL 258 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4567789999999999998877754 358999999999998887753
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=84.91 E-value=0.63 Score=39.85 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=44.6
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|.+.| .++..|+++|++|+.+|.+++.++...+... .++.++++|+.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~ 62 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG--DAARYQHLDVTI 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG--GGEEEEECCTTC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEcccCC
Confidence 46888999998887 3467778889999999999988776655443 467888888765
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.80 E-value=0.62 Score=39.90 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=45.5
Q ss_pred CCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCC
Q 043471 54 EGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSP 112 (485)
Q Consensus 54 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 112 (485)
+|+++|=-|++.| .++..|++.|++|+.+|.+++.++.+.+..+ +++.++.+|+++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~ 63 (256)
T d1k2wa_ 4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG--PAACAIALDVTDQ 63 (256)
T ss_dssp TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCH
Confidence 5778999998777 3456777789999999999988887766654 5788899998763
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=84.78 E-value=0.99 Score=39.95 Aligned_cols=126 Identities=12% Similarity=0.103 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCChhHHHHhhcCCC-EEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCCCC-CCCccEEEEccccc
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKFDV-HVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKTYP-ENSFDVIYSRDTIL 360 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~~~-~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~~~-~~~fD~i~~~~~~~ 360 (485)
.+.+|||+=||.|.+...|.+. |. .+.++|+++.+++..+.+.... .++|+.++... -..+|+++......
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~~------~~~Di~~~~~~~~~~~Dll~ggpPCq 82 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGEK------PEGDITQVNEKTIPDHDILCAGFPCQ 82 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSCC------CBSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCCC------CcCchhcCchhhcceeeeeecccccc
Confidence 5689999999999999888765 66 4566899999999999987532 24677665322 23589999864433
Q ss_pred cc---------CC-HHHHH---HHHHhcCCCCcEEEEEecccCCCCCChhHHHHHHhcCCCCCCHHHHHHHHHhCCCeEE
Q 043471 361 HI---------QD-KPALF---KSFFKWLKPGGTVLISDYCKSFGTPSVEFSEYIKQRGYDLHDVKSYGQMLKDAGFVDI 427 (485)
Q Consensus 361 ~~---------~~-~~~~l---~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 427 (485)
-+ .| ...++ -++.+.++|. .+++......... . .......+.+.|++.|+.+.
T Consensus 83 ~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP~-~~~lENV~~~~~~-----------~--~~~~~~~i~~~l~~lGY~~~ 148 (327)
T d2c7pa1 83 AFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVKNFASH-----------D--NGNTLEVVKNTMNELDYSFH 148 (327)
T ss_dssp TTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEGGGGTG-----------G--GGHHHHHHHHHHHHTTBCCE
T ss_pred hhhhhhhhcCCcccchhHHHHHHHHHhccCCc-EEecccchhhhhh-----------c--cchhhHHhhhHHHhcCCcce
Confidence 22 11 11233 3344556774 4444432211100 0 01123567788899998765
Q ss_pred EE
Q 043471 428 IA 429 (485)
Q Consensus 428 ~~ 429 (485)
..
T Consensus 149 ~~ 150 (327)
T d2c7pa1 149 AK 150 (327)
T ss_dssp EE
T ss_pred ee
Confidence 43
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.09 E-value=0.95 Score=38.31 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=51.5
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCCCCC----CCCCCeeEEE
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSPDLT----FSEDSVDMMF 125 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~D~v~ 125 (485)
.+|+++|=-|++.|. ++..|++.|++|+.+|.+++.++...+.. +++.++++|+.+.+.. -.-+..|+++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 79 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLV 79 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence 368889989987772 45677778999999999988877666554 4688889998763210 0125788877
Q ss_pred hh
Q 043471 126 SN 127 (485)
Q Consensus 126 ~~ 127 (485)
.+
T Consensus 80 nn 81 (242)
T d1cyda_ 80 NN 81 (242)
T ss_dssp EC
T ss_pred EC
Confidence 54
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.57 Score=31.71 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHcCCCCCCEEEEECC--CCChhHHHHhhcCCCEEEEEeCCHHHHHHHHHH
Q 043471 276 VAKLDLKPGQKVLDVGC--GIGGGDFYMADKFDVHVVGIDLSINMISFALER 325 (485)
Q Consensus 276 ~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~ 325 (485)
.+....+++.+||=.|. |.|.++..+++..|++|+++.-|++-.+.+++.
T Consensus 24 ~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~l 75 (77)
T d1o8ca2 24 EDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL 75 (77)
T ss_dssp HHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH
T ss_pred HhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHC
Confidence 34445678889998886 446778888888899999999999988888763
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.90 E-value=1.2 Score=37.80 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=57.6
Q ss_pred CCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCC--CCCeEEEEccCCCCC-----C-----CCC
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGL--KCSVEFEVADCTKKT-----Y-----PEN 348 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~--~~~i~~~~~d~~~~~-----~-----~~~ 348 (485)
|+.+|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+... +.++.++.+|+.+.. + .-+
T Consensus 3 GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 667888887655 444444433 899999999999888877766432 346788889987742 0 015
Q ss_pred CccEEEEcccccccCCHHH
Q 043471 349 SFDVIYSRDTILHIQDKPA 367 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~~~~ 367 (485)
+.|+++.+.......+.++
T Consensus 82 ~iDilVnnAg~~~~~~~~~ 100 (254)
T d2gdza1 82 RLDILVNNAGVNNEKNWEK 100 (254)
T ss_dssp CCCEEEECCCCCCSSSHHH
T ss_pred CcCeecccccccccccchh
Confidence 7899999877766655443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.68 E-value=1.1 Score=38.23 Aligned_cols=103 Identities=18% Similarity=0.139 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCChhHHHHhhcC---CCEEEEE-eCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----------CCCC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF---DVHVVGI-DLSINMISFALERAIGLKCSVEFEVADCTKKT----------YPEN 348 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~-D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------~~~~ 348 (485)
.|+.+|=-|++ +.++..+++.+ |++|+.+ .-+...++.+.+.+...+.++.++.+|+.+.. ..-+
T Consensus 5 ~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 47788877755 44454444433 7888865 56677777777777766778889999987631 0125
Q ss_pred CccEEEEcccccccCC-------------------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 349 SFDVIYSRDTILHIQD-------------------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 349 ~fD~i~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
..|+++.+..+.+..+ .-...+.+...|+.+|..++..
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~ 140 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTS 140 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccc
Confidence 6899999877655432 2233566666777777766553
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.50 E-value=2.3 Score=36.44 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=66.0
Q ss_pred CCEEEEECCCCCh---hHHHHhhcCCCEEEEEeCC-HHHHHHHHHHhcCCCCCeEEEEccCCCCC----------CCCCC
Q 043471 284 GQKVLDVGCGIGG---GDFYMADKFDVHVVGIDLS-INMISFALERAIGLKCSVEFEVADCTKKT----------YPENS 349 (485)
Q Consensus 284 ~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s-~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 349 (485)
|+.+|=-|++.|. ++..|++. |++|+.+|.+ ++.++...+.+...+.++.+..+|+.+.. -..+.
T Consensus 18 gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 96 (272)
T d1g0oa_ 18 GKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 96 (272)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 6788888876652 34444444 8899999986 55666666655555667888889987631 01256
Q ss_pred ccEEEEcccccccCC-------------------HHHHHHHHHhcCCCCcEEEEEe
Q 043471 350 FDVIYSRDTILHIQD-------------------KPALFKSFFKWLKPGGTVLISD 386 (485)
Q Consensus 350 fD~i~~~~~~~~~~~-------------------~~~~l~~~~~~LkpgG~l~i~~ 386 (485)
.|+++.+........ .-...+.+.+.|+.+|..++..
T Consensus 97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 899888765543321 2223566677788777776653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=83.49 E-value=1.7 Score=36.97 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=55.3
Q ss_pred CCCEEEEECCCCCh---hHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----C-----CCCC
Q 043471 283 PGQKVLDVGCGIGG---GDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-----Y-----PENS 349 (485)
Q Consensus 283 ~~~~vLDiGcG~G~---~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-----~-----~~~~ 349 (485)
.|+.+|=-|.+.|. ++..|++. |++|+.+|.+++.++.+.+.+...+.++..+.+|+.+.. + .-+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 46788888876552 34444444 899999999999999888888777778888999987642 0 0157
Q ss_pred ccEEEEcccc
Q 043471 350 FDVIYSRDTI 359 (485)
Q Consensus 350 fD~i~~~~~~ 359 (485)
.|+++.+...
T Consensus 83 iDilVnnaG~ 92 (260)
T d1zema1 83 IDFLFNNAGY 92 (260)
T ss_dssp CCEEEECCCC
T ss_pred CCeehhhhcc
Confidence 8998876543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.29 E-value=0.66 Score=39.83 Aligned_cols=59 Identities=22% Similarity=0.120 Sum_probs=45.2
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcC-CCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNG-HFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+... ...++.++.+|+.+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~ 68 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS 68 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC
Confidence 368889999987763 456777789999999999988876665543 22478888999876
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=83.07 E-value=0.95 Score=41.37 Aligned_cols=48 Identities=15% Similarity=0.019 Sum_probs=40.3
Q ss_pred CCCCCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhc
Q 043471 280 DLKPGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAI 327 (485)
Q Consensus 280 ~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~ 327 (485)
.++++..++|||+-.|..+..++... ..+|+++|+++...+..++++.
T Consensus 209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 46678899999999999888776643 3589999999999999988865
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=82.90 E-value=0.73 Score=39.08 Aligned_cols=56 Identities=29% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 54 EGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 54 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
+|+++|=-|++.| .++..|++.|++|+.+|.+++.++...+... .+..++.+|+.+
T Consensus 3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~ 61 (243)
T d1q7ba_ 3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG--ANGKGLMLNVTD 61 (243)
T ss_dssp TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG--GGEEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecC
Confidence 5778888887776 3456777789999999999998887666553 467788888775
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.73 E-value=0.71 Score=32.77 Aligned_cols=67 Identities=12% Similarity=0.192 Sum_probs=41.1
Q ss_pred CCCcEEEEc-CCCCcc--hHHHHhhcCcEEEEeCChH-HHHHHHHHcCCCCCeEEEEeeccCCCCCCCCCCeeEEEhhhh
Q 043471 54 EGKTVLEFG-AGIGRF--TGELAKKAGHVIALDFIDS-VIKKNEEVNGHFENVKFMCADVTSPDLTFSEDSVDMMFSNWL 129 (485)
Q Consensus 54 ~~~~vLDiG-cG~G~~--~~~l~~~~~~v~giD~s~~-~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~~~~D~v~~~~~ 129 (485)
...+|.=|| ||+|-. +..|.++|++|+|.|.... ..+...+ ..+.+..+..... + ...|+|+.+..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~-----~Gi~v~~g~~~~~-i----~~~d~vV~S~A 76 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ-----AGAKIYIGHAEEH-I----EGASVVVVSSA 76 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH-----TTCEEEESCCGGG-G----TTCSEEEECTT
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH-----CCCeEEECCcccc-C----CCCCEEEECCC
Confidence 456777786 566644 5677788999999999643 3333333 2455555544331 2 35788876654
Q ss_pred h
Q 043471 130 L 130 (485)
Q Consensus 130 ~ 130 (485)
+
T Consensus 77 I 77 (96)
T d1p3da1 77 I 77 (96)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=82.73 E-value=1.7 Score=37.05 Aligned_cols=79 Identities=16% Similarity=0.078 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCC---hhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-----------CCCC
Q 043471 283 PGQKVLDVGCGIG---GGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT-----------YPEN 348 (485)
Q Consensus 283 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~-----------~~~~ 348 (485)
.|+.+|=.|++.| .++..+++. |++|+.++.++..++.+.+.+...+.++.+..+|+.+.. ...+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4778999998765 234444444 889999999999888888877766667888889987642 1135
Q ss_pred CccEEEEccccccc
Q 043471 349 SFDVIYSRDTILHI 362 (485)
Q Consensus 349 ~fD~i~~~~~~~~~ 362 (485)
..|+++++....+.
T Consensus 84 ~idilinnag~~~~ 97 (258)
T d1ae1a_ 84 KLNILVNNAGVVIH 97 (258)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CcEEEecccccccc
Confidence 68888886655443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.55 E-value=1.2 Score=37.89 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCC---CCCeEEEEeeccCCCCC--------CCCC
Q 043471 54 EGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGH---FENVKFMCADVTSPDLT--------FSED 119 (485)
Q Consensus 54 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~---~~~~~~~~~d~~~~~~~--------~~~~ 119 (485)
.|+.+|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+.... ..++.++.+|+++.+.. -.-+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 47788888987763 4566777799999999999888776665432 13688999999873100 0125
Q ss_pred CeeEEEhhhhhh
Q 043471 120 SVDMMFSNWLLM 131 (485)
Q Consensus 120 ~~D~v~~~~~~~ 131 (485)
..|+++.+....
T Consensus 82 ~iDilVnnAg~~ 93 (254)
T d2gdza1 82 RLDILVNNAGVN 93 (254)
T ss_dssp CCCEEEECCCCC
T ss_pred CcCeeccccccc
Confidence 688887665443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=82.44 E-value=0.84 Score=36.29 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=61.4
Q ss_pred HHHHHcCCCCCCEEEEECCCCChh-HHHHhhcC-CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC-------
Q 043471 274 EFVAKLDLKPGQKVLDVGCGIGGG-DFYMADKF-DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------- 344 (485)
Q Consensus 274 ~~~~~~~~~~~~~vLDiGcG~G~~-~~~l~~~~-~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------- 344 (485)
.+++...++++.+||=+|||.+.. +..++... +..|+++|.+++-++.+++.-. -.++...-.+..
T Consensus 19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA-----d~~in~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA-----TDFVNPNDHSEPISQVLSK 93 (175)
T ss_dssp HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC-----CEEECGGGCSSCHHHHHHH
T ss_pred HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC-----cEEEcCCCcchhHHHHHHh
Confidence 344566799999999999988544 44444444 4589999999999998886421 122221111111
Q ss_pred CCCCCccEEEEcccccccCCHHHHHHHHHhcCCCC-cEEEEE
Q 043471 345 YPENSFDVIYSRDTILHIQDKPALFKSFFKWLKPG-GTVLIS 385 (485)
Q Consensus 345 ~~~~~fD~i~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 385 (485)
.....+|+|+-.-. ....+..+...+++| |.+++.
T Consensus 94 ~~~~G~d~vid~~G------~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 94 MTNGGVDFSLECVG------NVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp HHTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred hccCCcceeeeecC------CHHHHHHHHHHhhCCCcceeEE
Confidence 11245888876432 244566777776666 444443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=0.66 Score=39.73 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=43.8
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCC-CCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGH-FENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~-~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+.+.. .+++.++.+|+.+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~ 71 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITS 71 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC
Confidence 357888888877663 3466777799999999999888766554332 2478888999876
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.68 E-value=0.71 Score=39.63 Aligned_cols=59 Identities=17% Similarity=0.014 Sum_probs=44.6
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcC-CCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNG-HFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+... ...++.++.+|+.+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~ 68 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL 68 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC
Confidence 368899999988773 556777889999999999988876655432 22478888888765
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.63 E-value=1 Score=38.95 Aligned_cols=56 Identities=27% Similarity=0.348 Sum_probs=43.8
Q ss_pred CCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 54 EGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 54 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
+|+++|=-|++.|. .+..|++.|++|+.+|.+++.++...+..+ .++..+.+|+.+
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~ 62 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG--DNVLGIVGDVRS 62 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC--CCeeEEeccccc
Confidence 57889999987663 456777779999999999988876666543 478888988876
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.57 E-value=2.5 Score=35.59 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=52.6
Q ss_pred CCCEEEEECCCCC---hhHHHHhhcCCCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC------CCCCCccEE
Q 043471 283 PGQKVLDVGCGIG---GGDFYMADKFDVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT------YPENSFDVI 353 (485)
Q Consensus 283 ~~~~vLDiGcG~G---~~~~~l~~~~~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~------~~~~~fD~i 353 (485)
.|+++|=-|++.| .++..|++. |++|+.+|.+++.++...+... .+..+..|+.+.. -.-++.|++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~g~iDil 80 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHhCCceEE
Confidence 4789999998766 234444444 8899999999988887766653 5677888886631 112579999
Q ss_pred EEccccccc
Q 043471 354 YSRDTILHI 362 (485)
Q Consensus 354 ~~~~~~~~~ 362 (485)
+.+......
T Consensus 81 VnnAg~~~~ 89 (244)
T d1pr9a_ 81 VNNAAVALL 89 (244)
T ss_dssp EECCCCCCC
T ss_pred Eeccccccc
Confidence 987655443
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.25 E-value=3.4 Score=34.60 Aligned_cols=75 Identities=16% Similarity=0.089 Sum_probs=50.9
Q ss_pred CCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----------CCCCCc
Q 043471 284 GQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----------YPENSF 350 (485)
Q Consensus 284 ~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------~~~~~f 350 (485)
|+.+|=-|++.| ++..+++.+ |++|+.+|.+++.++...+.+. .+...+.+|+.+.. -.-+..
T Consensus 4 gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (243)
T d1q7ba_ 4 GKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEFGEV 79 (243)
T ss_dssp TCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence 667777787655 444444433 8999999999988887776653 25777888887631 012578
Q ss_pred cEEEEccccccc
Q 043471 351 DVIYSRDTILHI 362 (485)
Q Consensus 351 D~i~~~~~~~~~ 362 (485)
|+++.+....+.
T Consensus 80 DilVnnAg~~~~ 91 (243)
T d1q7ba_ 80 DILVNNAGITRD 91 (243)
T ss_dssp SEEEECCCCCCC
T ss_pred ceehhhhhhccc
Confidence 999987655443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.13 E-value=1.1 Score=38.24 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=43.8
Q ss_pred CCCCcEEEEcCCCC---cchHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 53 YEGKTVLEFGAGIG---RFTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 53 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
.+|+++|=-|++.| .++..|++.|++|+.+|.+++.++...+... .+..++.+|+.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~ 63 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG--ERSMFVRHDVSS 63 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC--TTEEEECCCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--CCeEEEEeecCC
Confidence 46788888887766 3456777789999999999988887766654 467778888775
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=81.08 E-value=0.52 Score=42.35 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCcchHHHHh----hcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccCC
Q 043471 54 EGKTVLEFGAGIGRFTGELAK----KAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTSP 112 (485)
Q Consensus 54 ~~~~vLDiGcG~G~~~~~l~~----~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~ 112 (485)
++++||=.| |+|.++.++++ +|++|+++|.++.-.....+.....++++++.+|+.+.
T Consensus 7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 68 (356)
T d1rkxa_ 7 QGKRVFVTG-HTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQ 68 (356)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCH
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccCh
Confidence 467899888 56887766655 49999999986543322222222235899999998763
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=80.78 E-value=0.98 Score=38.76 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=44.8
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcC----CCCCeEEEEeeccCC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNG----HFENVKFMCADVTSP 112 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~ 112 (485)
.+|+.+|=-|++.|. .+..|++.|++|+.+|.+++.++.+.+... ...++.++++|+.+.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~ 69 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD 69 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCH
Confidence 357788888887763 456777889999999999988877665432 123689999999763
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.73 E-value=1.4 Score=37.18 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHcCCCCCeEEEEeeccC
Q 043471 54 EGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVNGHFENVKFMCADVTS 111 (485)
Q Consensus 54 ~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~~d~~~ 111 (485)
+++++|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+.. +..++.+|+.+
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~ 60 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVAD 60 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc----CCeEEEEecCC
Confidence 57789999987772 35667777999999999998888776643 46778888765
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=80.66 E-value=1.9 Score=36.73 Aligned_cols=60 Identities=20% Similarity=0.234 Sum_probs=45.3
Q ss_pred CCCCcEEEEcCCCCc---chHHHHhhcCcEEEEeCChHHHHHHHHHc---CCCCCeEEEEeeccCC
Q 043471 53 YEGKTVLEFGAGIGR---FTGELAKKAGHVIALDFIDSVIKKNEEVN---GHFENVKFMCADVTSP 112 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~---~~~~l~~~~~~v~giD~s~~~~~~a~~~~---~~~~~~~~~~~d~~~~ 112 (485)
.+|+++|=-|++.|. ++..|++.|++|+.+|.+++.++.+.+.. ....++.++++|+.+.
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE 67 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCH
Confidence 357788889988773 56788888999999999998877655432 2224788899998863
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=80.60 E-value=2.1 Score=36.16 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCcchHHHHhh------------------------------------------cCcEEEEeCChHHH
Q 043471 52 PYEGKTVLEFGAGIGRFTGELAKK------------------------------------------AGHVIALDFIDSVI 89 (485)
Q Consensus 52 ~~~~~~vLDiGcG~G~~~~~l~~~------------------------------------------~~~v~giD~s~~~~ 89 (485)
-..+..++|--||+|.+.+..+-. ...++|.|+.+.++
T Consensus 48 w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai 127 (249)
T d1o9ga_ 48 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAA 127 (249)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHH
Confidence 344567999999999988655431 12457888888888
Q ss_pred HHHHH---H---cCCCCCeEEEEeeccCCCC-C--CCCCCeeEEEhhhhhh-cc------ChHHHHHHHHHHHhhcccCc
Q 043471 90 KKNEE---V---NGHFENVKFMCADVTSPDL-T--FSEDSVDMMFSNWLLM-YL------SDKEVEKLAERMVKWLKVGG 153 (485)
Q Consensus 90 ~~a~~---~---~~~~~~~~~~~~d~~~~~~-~--~~~~~~D~v~~~~~~~-~~------~~~~~~~~l~~~~~~L~pgG 153 (485)
+.|++ + .+....+.+.++|+.+..- . .+....++|++|=-.. -+ ..+.+.++...+.+.+..-.
T Consensus 128 ~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s 207 (249)
T d1o9ga_ 128 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHA 207 (249)
T ss_dssp HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCc
Confidence 87742 2 2223468999999865311 0 1235678999983321 12 22346778888899897666
Q ss_pred EEEEEe
Q 043471 154 YIFFRE 159 (485)
Q Consensus 154 ~l~~~~ 159 (485)
.++++.
T Consensus 208 ~~~it~ 213 (249)
T d1o9ga_ 208 VIAVTD 213 (249)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 666653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=80.45 E-value=2.5 Score=35.71 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=56.5
Q ss_pred CCCEEEEECCCCChhHHHHhhcC---CCEEEEEeCCHHHHHHHHHHhcCCCCCeEEEEccCCCCC----------CCCCC
Q 043471 283 PGQKVLDVGCGIGGGDFYMADKF---DVHVVGIDLSINMISFALERAIGLKCSVEFEVADCTKKT----------YPENS 349 (485)
Q Consensus 283 ~~~~vLDiGcG~G~~~~~l~~~~---~~~v~g~D~s~~~~~~a~~~~~~~~~~i~~~~~d~~~~~----------~~~~~ 349 (485)
.++.+|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+...+.++.++.+|+.+.. -.-+.
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 3567777787655 555554433 889999999999998888888776678889999997742 01257
Q ss_pred ccEEEEcccccc
Q 043471 350 FDVIYSRDTILH 361 (485)
Q Consensus 350 fD~i~~~~~~~~ 361 (485)
.|+++.+.....
T Consensus 88 iDilvnnag~~~ 99 (251)
T d2c07a1 88 VDILVNNAGITR 99 (251)
T ss_dssp CCEEEECCCCCC
T ss_pred ceeeeecccccc
Confidence 899888765543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.45 E-value=2.2 Score=37.76 Aligned_cols=107 Identities=16% Similarity=0.248 Sum_probs=68.8
Q ss_pred CCCCcEEEEcCCCCcchHHHHhhcCcE--EEEeCChHHHHHHHHHc----------C-------------CCCCeEEEEe
Q 043471 53 YEGKTVLEFGAGIGRFTGELAKKAGHV--IALDFIDSVIKKNEEVN----------G-------------HFENVKFMCA 107 (485)
Q Consensus 53 ~~~~~vLDiGcG~G~~~~~l~~~~~~v--~giD~s~~~~~~a~~~~----------~-------------~~~~~~~~~~ 107 (485)
.+...|+-+|||.=.....|.....++ +=||..+ .++.-++.+ + ..++..++-+
T Consensus 95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~ 173 (328)
T d1rjda_ 95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 173 (328)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence 445689999999998887776654454 5555444 333222211 0 1146788888
Q ss_pred eccCCCC-------CCCCCCeeEEEhhhhhhccChHHHHHHHHHHHhhcccCcEEEEEecc
Q 043471 108 DVTSPDL-------TFSEDSVDMMFSNWLLMYLSDKEVEKLAERMVKWLKVGGYIFFRESC 161 (485)
Q Consensus 108 d~~~~~~-------~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (485)
|+.+..+ .+..+..-++++-.++.+++.+...++++.+.+.... |.+++-++.
T Consensus 174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~-~~~i~YE~i 233 (328)
T d1rjda_ 174 DLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH-GLWISYDPI 233 (328)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC-ceEEEeccC
Confidence 8876321 1222334478888899999988889999999988865 455554554
|