Citrus Sinensis ID: 043478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEEEHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHHHHccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHEccccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mshiqlkelqegnhmklssldlgidddayYKKTLFAIFGrsnqlndnlSFLSVEHKssfenlfsvplmyggcahrspkeicrkycpltmesenFCEEHVSLDkrtknekfMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE
Flexible Loop (DISEMBL)
MSHIQLkelqegnhmklSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLdkrtknekfMLLRSVVpyisevdkasilndTIKYLKRLKARVEE
Low Complexity Region (SEG)
MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE
Disordered region (IsUnstruct)
******************SLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRL******
Disordered Region (DISOPRED)
***********************************************************************************************************EKFMLLRSVVPYISEVDKASILNDTIKYLKRLKA****
Disordered Region (DISEMBL)
MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE
Disordered Region (DISPRO)
***IQLKEL***NHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCA*******************NFC*****LDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHVSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q8W2F1	526	Transcription factor MYC1	yes	no	0.868	0.239	0.356	4e-12
Q9CAD0	596	Transcription factor EGL1	no	no	0.855	0.208	0.335	2e-11
Q9FN69	637	Transcription factor GLAB	no	no	0.834	0.189	0.309	5e-09
Q9FT81	518	Transcription factor TT8	no	no	0.331	0.092	0.490	3e-07
P13027	612	Anthocyanin regulatory R-	N/A	no	0.344	0.081	0.452	5e-06
P13526	610	Anthocyanin regulatory Lc	N/A	no	0.344	0.081	0.452	5e-06
Q9ZPY8	566	Transcription factor ABA-	no	no	0.324	0.083	0.46	1e-05
Q39204	623	Transcription factor MYC2	no	no	0.462	0.107	0.385	2e-05
Q9LSE2	494	Transcription factor ICE1	no	no	0.296	0.087	0.488	3e-05
Q9LPW3	450	Transcription factor SCRE	no	no	0.268	0.086	0.538	3e-05

>sp|Q8W2F1|BH012_ARATH Transcription factor MYC1 OS=Arabidopsis thaliana GN=BHLH12 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 78/146 (53%), Gaps = 20/146 (13%)

Query: 20  LDLGI-DDDAYYKKTLFAIFG----RSNQLNDNL-----SFLSVEHKSSFENLFSVPLMY 69
           L LGI D+D +YK+T+  +      RS + + N+     + ++ E  SSF          
Sbjct: 243 LPLGISDEDLHYKRTISTVLNYSADRSGKNDKNIRHRQPNIVTSEPGSSFLRWKQCEQQV 302

Query: 70  GGCAHRSPKE-ICRKY---CPLTMESENFCEEHVSL------DKRTKNEKFMLLRSVVPY 119
            G   +   + + RK     PL      F  ++  L      D+R +NEKF +LR++VP 
Sbjct: 303 SGFVQKKKSQNVLRKILHDVPLMHTKRMFPSQNSGLNQDDPSDRRKENEKFSVLRTMVPT 362

Query: 120 ISEVDKASILNDTIKYLKRLKARVEE 145
           ++EVDK SILN+TIKYL+ L+ARVEE
Sbjct: 363 VNEVDKESILNNTIKYLQELEARVEE 388

Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 84/170 (49%), Gaps = 46/170 (27%)

Query: 2   SHIQ-LKELQE-GNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF 59
           S IQ L ++QE  NH+ +       DDD +Y+  +  IF  ++QL     F + + +SSF
Sbjct: 307 SRIQRLGQIQEQSNHVNM-------DDDVHYQGVISTIFKTTHQLILGPQFQNFDKRSSF 359

Query: 60  EN---------------------LFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                  LF VPLM       + KE   +  P T E       H
Sbjct: 360 TRWKRSSSVKTLGEKSQKMIKKILFEVPLM-------NKKE---ELLPDTPEETG---NH 406

Query: 99  VSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              +K+ +   NE+FM LRS++P IS++DK SIL+DTI+YL+ L+ RV+E
Sbjct: 407 ALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456

Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation but promotes trichome formation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Involved in seed mucilage production. Activates the transcription of GL2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN69|GL3_ARATH Transcription factor GLABRA 3 OS=Arabidopsis thaliana GN=GL3 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 18/139 (12%)

Query: 25  DDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVPLMYGGCAH-RSPKEICRK 83
           +DD +Y+  +  IF  ++QL     F + + +SSF           G A   +P +   K
Sbjct: 354 NDDVHYQSVISTIFKTNHQLILGPQFRNCDKQSSFTRWKKSSSSSSGTATVTAPSQGMLK 413

Query: 84  YC-----------PLTMESENFCEE---HVSLDKRTK---NEKFMLLRSVVPYISEVDKA 126
                         L ++S    +E   H  L+K+ +   NE+FM LR ++P I+++DK 
Sbjct: 414 KIIFDVPRVHQKEKLMLDSPEARDETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKV 473

Query: 127 SILNDTIKYLKRLKARVEE 145
           SIL+DTI+YL+ L+ RV+E
Sbjct: 474 SILDDTIEYLQELERRVQE 492

Transcription activator, when associated with MYB75/PAP1, MYB90/PAP2 or TT2. Involved in epidermal cell fate specification. Regulates negatively stomata formation, but, in association with TTG1 and MYB0/GL1, promotes trichome formation, branching and endoreplication. Regulates also trichome cell wall maturation. Together with MYB66/WER, promotes the formation of non-hair cells in root epidermis cells in the N position. Whereas together with CPC, promotes the formation of hair cells in root epidermis cells in the H position by inhibiting non-hair cell formation. Seems also to play a role in the activation of anthocyanin biosynthesis, probably together with MYB75/PAP1. Activates the transcription of GL2.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 3/51 (5%)

Query: 98  HVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           HV  ++R +   NEKF+ LRS+VP+++++DK SIL DTI Y+  L+ RV E
Sbjct: 364 HVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHE 414

Transcription activator, when associated with MYB75/PAP1 or MYB90/PAP2. Involved in the control of flavonoid pigmentation. Plays a key role in regulating leucoanthocyanidin reductase (BANYULS) and dihydroflavonol-4-reductase (DFR). Not required for leucoanthocyanidin dioxygenase (LDOX) expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13027|ARRS_MAIZE Anthocyanin regulatory R-S protein OS=Zea mays GN=R-S PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 3/53 (5%)

Query: 96  EEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           + HV  +++ +   NE F++L+S++P I  V+KASIL +TI YLK L+ RV+E
Sbjct: 417 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQE 469

Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Zea mays (taxid: 4577)

>sp|P13526|ARLC_MAIZE Anthocyanin regulatory Lc protein OS=Zea mays GN=LC PE=2 SV=1

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 38/53 (71%), Gaps = 3/53 (5%)

Query: 96  EEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           + HV  +++ +   NE F++L+S++P I  V+KASIL +TI YLK L+ RV+E
Sbjct: 415 KNHVMSERKRREKLNEMFLVLKSLLPSIHRVNKASILAETIAYLKELQRRVQE 467

Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Zea mays (taxid: 4577)

>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 3/50 (6%)

Query: 98  HVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVE 144
           HV  +++ +   N++F  LRSVVP IS++DKAS+L D I Y+K L+ +V+
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVK 445

Transcription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 75  RSPKEICRKYCPLTMESENFCEEHVSLDKRTK-NEKFMLLRSVVPYISEVDKASILNDTI 133
           + PK+  RK  P     E          +R K N++F  LR+VVP +S++DKAS+L D I
Sbjct: 434 KRPKKRGRK--PANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAI 491

Query: 134 KYLKRLKARV 143
            Y+  LK++V
Sbjct: 492 AYINELKSKV 501

Transcriptional activator. Common transcription factor of light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways. In cooperation with MYB2 is involved in the regulation of ABA-inducible genes under drought stress conditions. Binds to the MYC recognition site (5'-CACATG-3'), and to the G-box (5'-CACNTG-3') and Z-box (5'-ATACGTGT-3') of light-responsive promoters. Negative regulator of blue light-mediated photomorphogenic growth and blue- and far-red-light regulated gene expression. Positive regulator of lateral root formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 31/43 (72%)

Query: 103 KRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           ++  N++  +LRSVVP IS++D+ASIL D I YLK L  R+ +
Sbjct: 316 RKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRIND 358

Transcriptional activator that regulates the cold-induced transcription of CBF/DREB1 genes. Binds specifically to the MYC recognition sites (5'-CANNTG-3') found in the CBF3/DREB1A promoter. Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 107 NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           N++  +LRSVVP IS++D+ASIL D I YLK L  R+ +
Sbjct: 280 NDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRIND 318

Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
150416421	656	MYC2 [Citrus sinensis]	1.0	0.221	0.706	3e-60
150416419	656	MYC2 [Citrus sinensis]	1.0	0.221	0.706	4e-60
224127668	649	predicted protein [Populus trichocarpa]	1.0	0.223	0.445	2e-28
224064031	654	predicted protein [Populus trichocarpa]	1.0	0.221	0.445	2e-27
147834195	583	hypothetical protein VITISV_040405 [Viti	1.0	0.248	0.407	2e-26
297745295	639	unnamed protein product [Vitis vinifera]	1.0	0.226	0.407	2e-26
187936004	654	myc anthocyanin regulatory protein [Viti	1.0	0.221	0.407	2e-26
225454234	654	PREDICTED: transcription factor GLABRA 3	1.0	0.221	0.407	2e-26
359489618	659	PREDICTED: transcription factor GLABRA 3	1.0	0.220	0.407	2e-26
255541590	656	transcription factor, putative [Ricinus	0.986	0.217	0.409	8e-22

>gi|150416421|gb|ABR68793.1| MYC2 [Citrus sinensis]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 133/167 (79%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFE 60
           MSHIQLKELQEGNH KLS LDLGIDD A+Y+KTL AIFG SN+L +N  FLSVEHKSSF 
Sbjct: 343 MSHIQLKELQEGNHTKLSLLDLGIDDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFV 402

Query: 61  N----------------------LFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
           +                      LFSVPLM+GGC HRS KEICRKYCP+TMES+NFCEEH
Sbjct: 403 SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH 462

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           +S DKRT+NEKFM+LRS+VPYISEVDKASIL+DTIKYLK+L+ARVEE
Sbjct: 463 ISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEE 509

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150416419|gb|ABR68792.1| MYC2 [Citrus sinensis]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 133/167 (79%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFE 60
           MSHIQLKELQEGNH KLS LDLGIDD A+Y+KTL AIFG SN+L +N  FLSVEHKSSF 
Sbjct: 343 MSHIQLKELQEGNHTKLSLLDLGIDDGAHYRKTLSAIFGSSNRLTENPCFLSVEHKSSFV 402

Query: 61  N----------------------LFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
           +                      LFSVPLM+GGC HRS KEICRKYCP+TMES+NFCEEH
Sbjct: 403 SWKKGGMVKRHWPGIQQNLLKKILFSVPLMHGGCTHRSQKEICRKYCPVTMESDNFCEEH 462

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
           +S DKRT+NEKFM+LRS+VPYISEVDKASIL+DTIKYLK+L+ARVEE
Sbjct: 463 ISSDKRTENEKFMVLRSMVPYISEVDKASILSDTIKYLKKLEARVEE 509

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127668|ref|XP_002320131.1| predicted protein [Populus trichocarpa] gi|222860904|gb|EEE98446.1| predicted protein [Populus trichocarpa]

 Score =  130 bits (326), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 21/166 (12%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFE 60
           +SH+QLK LQEGNH KLSSLD G DDD +Y++T F I   S+QL +N  F S ++KSSF 
Sbjct: 342 ISHLQLKVLQEGNHTKLSSLDPGADDDLHYRRTAFVILKSSSQLIENPCFQSGDYKSSFV 401

Query: 61  N---------------------LFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHV 99
                                 LF+ PLM+GG + RS KE   K C   +E    C+ H 
Sbjct: 402 GWKKGAADGYKPRIQQKMLKKILFAAPLMHGGHSIRSDKENAGKDCLKNLEGCETCKLHF 461

Query: 100 SLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             +K+ +NEK++ L S+V  I+E+DKASIL+DTI Y ++L++RV E
Sbjct: 462 ESEKQKENEKYLALESIVASINEIDKASILSDTINYPRQLESRVAE 507

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064031|ref|XP_002301357.1| predicted protein [Populus trichocarpa] gi|222843083|gb|EEE80630.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 101/166 (60%), Gaps = 21/166 (12%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           ++ +Q +  QEGNH KLSS DLG DDD +Y++T+  I   S+Q  +N  F S +HKSSF 
Sbjct: 341 VTRLQSQVFQEGNHTKLSSFDLGADDDLHYRRTVCVIMKSSSQSIENPCFRSGDHKSSFF 400

Query: 60  ---------------EN-----LFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHV 99
                          +N     LF+VPL+YGG + R  KE     C   +E    C+EH 
Sbjct: 401 SWKKRAVDGVMPRVQQNMLKKILFAVPLIYGGHSLRFDKENGGTDCLKKLEGCETCKEHY 460

Query: 100 SLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             DK+  N+KF++LRS+VP ISE+DK SIL+DTI YLK+L++RV E
Sbjct: 461 KSDKQRVNDKFIVLRSMVPSISEIDKESILSDTINYLKQLESRVAE 506

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147834195|emb|CAN75308.1| hypothetical protein VITISV_040405 [Vitis vinifera]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +++++LK+LQE N  K SSLDLG DDD +Y++T+  +  +S+ L  N  F   + KSSF 
Sbjct: 267 VNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFI 326

Query: 60  ---------------------ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                + LF+VPLM+GGC  +S KE   +       S+  C++H
Sbjct: 327 TWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQH 386

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              DK+ + EKF++LRS+VP I+++D+ SIL DTI+YLK+L+ARVEE
Sbjct: 387 ALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEE 433

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745295|emb|CBI40375.3| unnamed protein product [Vitis vinifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +++++LK+LQE N  K SSLDLG DDD +Y++T+  +  +S+ L  N  F   + KSSF 
Sbjct: 323 VNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFI 382

Query: 60  ---------------------ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                + LF+VPLM+GGC  +S KE   +       S+  C++H
Sbjct: 383 TWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQH 442

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              DK+ + EKF++LRS+VP I+++D+ SIL DTI+YLK+L+ARVEE
Sbjct: 443 ALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEE 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187936004|gb|ABM92332.3| myc anthocyanin regulatory protein [Vitis vinifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +++++LK+LQE N  K SSLDLG DDD +Y++T+  +  +S+ L  N  F   + KSSF 
Sbjct: 338 VNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFI 397

Query: 60  ---------------------ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                + LF+VPLM+GGC  +S KE   +       S+  C++H
Sbjct: 398 TWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQH 457

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              DK+ + EKF++LRS+VP I+++D+ SIL DTI+YLK+L+ARVEE
Sbjct: 458 ALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEE 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454234|ref|XP_002274163.1| PREDICTED: transcription factor GLABRA 3 isoform 1 [Vitis vinifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +++++LK+LQE N  K SSLDLG DDD +Y++T+  +  +S+ L  N  F   + KSSF 
Sbjct: 338 VNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFI 397

Query: 60  ---------------------ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                + LF+VPLM+GGC  +S KE   +       S+  C++H
Sbjct: 398 TWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQH 457

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              DK+ + EKF++LRS+VP I+++D+ SIL DTI+YLK+L+ARVEE
Sbjct: 458 ALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEE 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489618|ref|XP_003633950.1| PREDICTED: transcription factor GLABRA 3 isoform 2 [Vitis vinifera]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 102/167 (61%), Gaps = 22/167 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +++++LK+LQE N  K SSLDLG DDD +Y++T+  +  +S+ L  N  F   + KSSF 
Sbjct: 343 VNNVRLKDLQECNDTKFSSLDLGADDDLHYRRTISTVLRKSHPLIGNSCFRCYDIKSSFI 402

Query: 60  ---------------------ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEH 98
                                + LF+VPLM+GGC  +S KE   +       S+  C++H
Sbjct: 403 TWKKGGMLDAQKPQTQQRILKKILFTVPLMHGGCGFKSQKENAGRDGLWKSGSDGICKQH 462

Query: 99  VSLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
              DK+ + EKF++LRS+VP I+++D+ SIL DTI+YLK+L+ARVEE
Sbjct: 463 ALSDKKREKEKFLVLRSMVPSINKIDEVSILGDTIEYLKKLEARVEE 509

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541590|ref|XP_002511859.1| transcription factor, putative [Ricinus communis] gi|223549039|gb|EEF50528.1| transcription factor, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 96/166 (57%), Gaps = 23/166 (13%)

Query: 1   MSHIQLKELQEGNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF- 59
           +SH+QLK LQEGN  KLSSL  G  DD +YK+TL  +   S QL  N  F S  +KSSF 
Sbjct: 342 VSHLQLKGLQEGNRTKLSSLGQGAKDDLHYKRTLSTVLQSSTQLIGNSCFQSGIYKSSFV 401

Query: 60  ---------------ENLF-----SVPLMYGGCAHRSPKEICRKYCPLTMESENFCEEHV 99
                          +N+      S+PLM+G       KE  RK C   +  +  CE   
Sbjct: 402 TWKKGAFSSQKPQVQQNMLKKILSSIPLMHGAHPLSLHKENERKDCHRKLNCDITCEGLS 461

Query: 100 SLDKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             DK+ ++E+F+ L+S++P ++E+DKA+IL+D I+YLK L+ARVE+
Sbjct: 462 --DKQREHERFLALKSMIPTVTEIDKAAILDDMIRYLKELEARVED 505

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2127023	580	ATMYC1 [Arabidopsis thaliana (	0.303	0.075	0.659	2.2e-12
TAIR|locus:2026629	596	EGL3 "AT1G63650" [Arabidopsis	0.931	0.226	0.352	1.6e-11
TAIR|locus:504954829	637	GL3 "AT5G41315" [Arabidopsis t	0.386	0.087	0.440	1.7e-11
UNIPROTKB|Q7XPS7	567	OSJNBa0065O17.4 "OSJNBa0065O17	0.393	0.100	0.5	3.7e-09
UNIPROTKB|Q657A4	370	P0022F12.30 "Regulatory protei	0.344	0.135	0.509	7.2e-08
UNIPROTKB|Q53L62	458	LOC_Os11g15210 "Helix-loop-hel	0.406	0.128	0.467	1e-07
TAIR|locus:2039094	566	AIB "AT2G46510" [Arabidopsis t	0.855	0.219	0.325	2.4e-07
TAIR|locus:2118524	518	TT8 "AT4G09820" [Arabidopsis t	0.331	0.092	0.490	3.4e-07
UNIPROTKB|Q84LF9	310	RERJ1 "Transcription Factor" [	0.303	0.141	0.533	1.3e-06
UNIPROTKB|Q948Y2	451	Plw-OSB2 "R-type basic helix-l	0.813	0.261	0.309	1.6e-06

TAIR|locus:2127023 ATMYC1 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 29/44 (65%), Positives = 39/44 (88%)

Query:   102 DKRTKNEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             D+R +NEKF +LR++VP ++EVDK SILN+TIKYL+ L+ARVEE
Sbjct:   345 DRRKENEKFSVLRTMVPTVNEVDKESILNNTIKYLQELEARVEE 388

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0048629 "trichome patterning" evidence=IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

GO:0009957 "epidermal cell fate specification" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2026629 EGL3 "AT1G63650" [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.6e-11, P = 1.6e-11
 Identities = 56/159 (35%), Positives = 88/159 (55%)

Query:     2 SHIQ-LKELQE-GNHMKLSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSF 59
             S IQ L ++QE  NH+ +       DDD +Y+  +  IF  ++QL     F + + +SSF
Sbjct:   307 SRIQRLGQIQEQSNHVNM-------DDDVHYQGVISTIFKTTHQLILGPQFQNFDKRSSF 359

Query:    60 ---ENLFSVPLMYGGCAHRSPKEICRKYCPLTMESENFC----EE---HVSLDKRTK--- 106
                +   SV  + G  + +  K+I  +  PL  + E       EE   H   +K+ +   
Sbjct:   360 TRWKRSSSVKTL-GEKSQKMIKKILFEV-PLMNKKEELLPDTPEETGNHALSEKKRREKL 417

Query:   107 NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             NE+FM LRS++P IS++DK SIL+DTI+YL+ L+ RV+E
Sbjct:   418 NERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQE 456

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009913 "epidermal cell differentiation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

TAIR|locus:504954829 GL3 "AT5G41315" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
 Identities = 26/59 (44%), Positives = 42/59 (71%)

Query:    90 ESENFCEEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             E+ +    H  L+K+ +   NE+FM LR ++P I+++DK SIL+DTI+YL+ L+ RV+E
Sbjct:   434 EARDETGNHAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQE 492

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010091 "trichome branching" evidence=IMP

GO:0001708 "cell fate specification" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009957 "epidermal cell fate specification" evidence=IMP

UNIPROTKB|Q7XPS7 OSJNBa0065O17.4 "OSJNBa0065O17.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 129 (50.5 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
 Identities = 31/62 (50%), Positives = 43/62 (69%)

Query:    87 LTMESENFCEEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARV 143
             LT ES    + HV  ++R +   NE F++L+S+VP I +VDKASIL +TI YLK L+ RV
Sbjct:   384 LTQESG--IKNHVISERRRREKLNEMFLILKSIVPSIHKVDKASILEETIAYLKVLEKRV 441

Query:   144 EE 145
             +E
Sbjct:   442 KE 443

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q657A4 P0022F12.30 "Regulatory protein B-Peru-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 130 (50.8 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query:    96 EEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             + HV  ++R +   NE F++L+S+VP I +VDKASIL++TI YLK L+ RV+E
Sbjct:   187 KNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETIAYLKELERRVQE 239

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q53L62 LOC_Os11g15210 "Helix-loop-helix DNA-binding domain, putative" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 130 (50.8 bits), Expect = 1.0e-07, P = 1.0e-07
 Identities = 29/62 (46%), Positives = 42/62 (67%)

Query:    87 LTMESENFCEEHVSLDKRTKN---EKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARV 143
             +T +  +  + HV  ++R +    E F++L+SVVP I +VDKASIL +TI YLK L+ RV
Sbjct:   234 MTTDQGSSIKNHVMSERRRREKLKEMFLILKSVVPSIHKVDKASILAETIAYLKELEKRV 293

Query:   144 EE 145
             EE
Sbjct:   294 EE 295

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 44/135 (32%), Positives = 68/135 (50%)

Query:    17 LSSLDLGIDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKS-SFENLFSVPLMYG-GCA- 73
             L ++++ +D++ Y  KT     G S   + N S  + + KS S      V L+ G G   
Sbjct:   315 LENVNMVVDNNNY--KTQIEFAGSSVAASSNPSTNTQQEKSESCTEKRPVSLLAGAGIVS 372

Query:    74 ---HRSPKEICRKYCPLTMESENFCEEHVSLDKRTK-NEKFMLLRSVVPYISEVDKASIL 129
                 + P++  RK  P     E          +R K N++F  LRSVVP IS++DKAS+L
Sbjct:   373 VVDEKRPRKRGRK--PANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLL 430

Query:   130 NDTIKYLKRLKARVE 144
              D I Y+K L+ +V+
Sbjct:   431 GDAISYIKELQEKVK 445

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 25/51 (49%), Positives = 37/51 (72%)

Query:    98 HVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             HV  ++R +   NEKF+ LRS+VP+++++DK SIL DTI Y+  L+ RV E
Sbjct:   364 HVVAERRRREKLNEKFITLRSMVPFVTKMDKVSILGDTIAYVNHLRKRVHE 414

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009962 "regulation of flavonoid biosynthetic process" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:2000029 "regulation of proanthocyanidin biosynthetic process" evidence=IEP

GO:0010026 "trichome differentiation" evidence=IMP

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

UNIPROTKB|Q84LF9 RERJ1 "Transcription Factor" [Oryza sativa (taxid:4530)]

 Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 24/45 (53%), Positives = 35/45 (77%)

Query:   102 DKRTK-NEKFMLLRSVVPYISEVDKASILNDTIKYLKRLKARVEE 145
             D+R K NEK   LRSVVP I+++DKASI+ D I+Y++RL+A  ++
Sbjct:   100 DRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQ 144

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q948Y2 Plw-OSB2 "R-type basic helix-loop-helix protein" [Oryza sativa (taxid:4530)]

 Score = 119 (46.9 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 39/126 (30%), Positives = 64/126 (50%)

Query:    24 IDDDAYYKKTLFAIFGRSNQLNDNLSFLSVEHKSSFENLFSVP-LMYGGCAHRSPKEICR 82
             +D  AY   + F  + R+N        ++V   +  E+   +   + GG A  S  +   
Sbjct:   308 VDGVAYSHASCFVSWKRANPAE---KVVAVPMTAGIESQKLLKKAVGGGTAWMSNIDDRG 364

Query:    83 KYCPLTMESENFCEEHVSLDKRTK---NEKFMLLRSVVPYISEVDKASILNDTIKYLKRL 139
                  T    N  + HV  ++R +   NE F++L+S++P + +VDKASIL +TI YLK L
Sbjct:   365 SVAITTTPGSNI-KSHVMSERRRREKLNEMFLILKSLLPSVRKVDKASILAETITYLKVL 423

Query:   140 KARVEE 145
             + RV+E
Sbjct:   424 EKRVKE 429

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_XIV1259 hypothetical protein (650 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
smart00353	53	smart00353, HLH, helix loop helix domain	1e-05
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	3e-04
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	0.003

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 104 RTKNEKFMLLRSVVPY---ISEVDKASILNDTIKYLKRLKARVEE 145
           R  NE F  LRS++P      ++ KA IL   I+Y+K L+  +++
Sbjct: 9   RKINEAFDELRSLLPTLPKNKKLSKAEILRLAIEYIKSLQEELQK 53

Length = 53

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 36.4 bits (85), Expect = 3e-04
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 107 NEKFMLLRSVVPYISE---VDKASILNDTIKYLKRLKARVE 144
           N+ F  LRS++P +     + KA IL   + Y+K L+  ++
Sbjct: 20  NDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 33.6 bits (78), Expect = 0.003
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 107 NEKFMLLRSVVP--YISEVDKASILNDTIKYLKRLK 140
           N+ F  LR ++P     ++ KA IL   I+Y+K L+
Sbjct: 17  NDAFEELRELLPTPPNKKLSKAEILRLAIEYIKHLQ 52

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	99.43
smart00353	53	HLH helix loop helix domain.	99.4
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	99.35
KOG1318	411	consensus Helix loop helix transcription factor EB	98.4
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	98.06
KOG2588	953	consensus Predicted DNA-binding protein [Transcrip	97.86
KOG4304	250	consensus Transcriptional repressors of the hairy/	97.83
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	97.79
KOG2483	232	consensus Upstream transcription factor 2/L-myc-2	97.71
KOG0561	373	consensus bHLH transcription factor [Transcription	97.67
KOG3960	284	consensus Myogenic helix-loop-helix transcription	97.36
KOG4029	228	consensus Transcription factor HAND2/Transcription	97.31
KOG3558	768	consensus Hypoxia-inducible factor 1/Neuronal PAS	94.0
KOG3910	632	consensus Helix loop helix transcription factor [T	92.77
PLN03217	93	transcription factor ATBS1; Provisional	92.72
KOG4447	173	consensus Transcription factor TWIST [Transcriptio	87.81
KOG3560	712	consensus Aryl-hydrocarbon receptor [Transcription	83.89
KOG3898	254	consensus Transcription factor NeuroD and related	83.8
KOG3559	598	consensus Transcriptional regulator SIM1 [Transcri	80.39

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=99.43  E-value=2.8e-13  Score=87.54  Aligned_cols=50  Identities=32%  Similarity=0.578  Sum_probs=47.0

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+..||+||   |+.|..|+++||..   .|+||++||..||+||+.|+.+++
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~   60 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ   60 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            567999999999   99999999999988   899999999999999999999874

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=99.40  E-value=5.7e-13  Score=84.81  Aligned_cols=46  Identities=35%  Similarity=0.586  Sum_probs=42.5

Q ss_pred             hHHHHhH---HHhHHHHHhcCCC---CCCcchhhhHHHHHHHHHHHHHHhhC
Q 043478          100 SLDKRTK---NEKFMLLRSVVPY---ISEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus       100 ~~ERrRR---ne~f~~LrslvP~---~~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      ..||+||   |+.|..|+++||.   ..|+||++||..||+||++|+.++++
T Consensus         2 ~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~~   53 (53)
T smart00353        2 ARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQK   53 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence            5799888   9999999999994   57999999999999999999999875

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=99.35  E-value=1.2e-12  Score=84.61  Aligned_cols=46  Identities=35%  Similarity=0.604  Sum_probs=43.0

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC-----CCcchhhhHHHHHHHHHHHH
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI-----SEVDKASILNDTIKYLKRLK  140 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~-----~K~dKaSIL~daI~Yik~Lq  140 (145)
                      ...|+..||+||   |+.|..|+.+||..     .|++|++||..||+||++||
T Consensus         2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq   55 (55)
T PF00010_consen    2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ   55 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence            357999999999   99999999999976     78999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=98.40  E-value=3.7e-07  Score=81.13  Aligned_cols=51  Identities=20%  Similarity=0.477  Sum_probs=45.6

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      .+..|++.|||||   |+++..|..|||.+    .|..|.+||..+.+||++|++.-+
T Consensus       233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q  290 (411)
T KOG1318|consen  233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ  290 (411)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence            3567999999999   99999999999977    477899999999999999987644

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=98.06  E-value=3.9e-06  Score=68.64  Aligned_cols=49  Identities=24%  Similarity=0.430  Sum_probs=43.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC-------CCcchhhhHHHHHHHHHHHHHHh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI-------SEVDKASILNDTIKYLKRLKARV  143 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~-------~K~dKaSIL~daI~Yik~Lq~~V  143 (145)
                      +..|.-+||+||   |..+..|+.|||.+       .|..||.||..||+||.+|..+.
T Consensus        63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k  121 (229)
T KOG1319|consen   63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEK  121 (229)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999   99999999999954       37889999999999999998764

>KOG2588 consensus Predicted DNA-binding protein [Transcription]

Probab=97.86  E-value=1.9e-05  Score=76.02  Aligned_cols=51  Identities=25%  Similarity=0.503  Sum_probs=47.8

Q ss_pred             cchhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHH
Q 043478           92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKAR  142 (145)
Q Consensus        92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~  142 (145)
                      ++.+.+|++.|||.|   |+|+..|+.+||+. .|+.|.+.|..||+||++|+..
T Consensus       274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~  328 (953)
T KOG2588|consen  274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGY  328 (953)
T ss_pred             CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcc
Confidence            467889999999999   99999999999988 8999999999999999999864

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=97.83  E-value=1.2e-05  Score=67.35  Aligned_cols=50  Identities=26%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCC--------CCCCcchhhhHHHHHHHHHHHHHHh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVP--------YISEVDKASILNDTIKYLKRLKARV  143 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP--------~~~K~dKaSIL~daI~Yik~Lq~~V  143 (145)
                      ...+|-+.|||||   |+-+..|+.|||        ..+|++||-||+-|++|+++|++..
T Consensus        32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~   92 (250)
T KOG4304|consen   32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ   92 (250)
T ss_pred             hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence            4567889999999   999999999999        2378999999999999999998753

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=97.79  E-value=2.2e-05  Score=74.78  Aligned_cols=48  Identities=25%  Similarity=0.382  Sum_probs=44.2

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHHH
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKAR  142 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~~  142 (145)
                      +.+|+.+|||||   |.-+.+|.+|||.+    -|+||-+||..||..||.+++.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~   75 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ   75 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence            678999999999   99999999999966    5999999999999999998873

>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]

Probab=97.71  E-value=7.7e-05  Score=62.10  Aligned_cols=54  Identities=24%  Similarity=0.441  Sum_probs=45.6

Q ss_pred             ccchhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcc--hhhhHHHHHHHHHHHHHHhh
Q 043478           91 SENFCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVD--KASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        91 ~~~~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~d--KaSIL~daI~Yik~Lq~~V~  144 (145)
                      ....+..|+.-||+||   .+.|..|+.+||.. +...  -++||..|++||+.|+.+..
T Consensus        56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~  115 (232)
T KOG2483|consen   56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSA  115 (232)
T ss_pred             CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHH
Confidence            4456778999999999   99999999999977 3333  59999999999999998754

>KOG0561 consensus bHLH transcription factor [Transcription]

Probab=97.67  E-value=4e-05  Score=66.51  Aligned_cols=45  Identities=31%  Similarity=0.516  Sum_probs=39.8

Q ss_pred             hhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHH
Q 043478           98 HVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKAR  142 (145)
Q Consensus        98 h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~  142 (145)
                      -+..||||-   |-.|..||+|+|.-  .|..||+||..+-+||.+|+.+
T Consensus        64 ANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~  113 (373)
T KOG0561|consen   64 ANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGH  113 (373)
T ss_pred             hcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence            445688887   99999999999965  8999999999999999999864

>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]

Probab=97.36  E-value=0.00032  Score=59.50  Aligned_cols=54  Identities=26%  Similarity=0.376  Sum_probs=44.0

Q ss_pred             cchhhhhhhHHHHhH---HHhHHHHHhc-CCCC-CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           92 ENFCEEHVSLDKRTK---NEKFMLLRSV-VPYI-SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        92 ~~~~~~h~~~ERrRR---ne~f~~Lrsl-vP~~-~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      -+.++.-.+.||||=   ||-|.+|+.- .++. ..+-|+-||..||+||..||.-++|
T Consensus       116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~  174 (284)
T KOG3960|consen  116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQE  174 (284)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            345667778898886   9999999764 4555 6789999999999999999987653

>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]

Probab=97.31  E-value=0.0006  Score=55.51  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCC----CCCcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPY----ISEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~----~~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ....++..||.|=   |..|..||.+||.    -.|..|+.+|.-||.||+.|+.-++
T Consensus       109 ~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~  166 (228)
T KOG4029|consen  109 QRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLA  166 (228)
T ss_pred             hhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhc
Confidence            3456777798888   9999999999994    4688999999999999999997654

>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]

Probab=94.00  E-value=0.048  Score=51.96  Aligned_cols=38  Identities=42%  Similarity=0.647  Sum_probs=31.9

Q ss_pred             HHHHhH---HHhHHHHHhcCCC---C-CCcchhhhHHHHHHHHHH
Q 043478          101 LDKRTK---NEKFMLLRSVVPY---I-SEVDKASILNDTIKYLKR  138 (145)
Q Consensus       101 ~ERrRR---ne~f~~LrslvP~---~-~K~dKaSIL~daI~Yik~  138 (145)
                      +-|.||   |+-|..|.-+||-   + +-.|||||+.=||.|++-
T Consensus        53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl   97 (768)
T KOG3558|consen   53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL   97 (768)
T ss_pred             hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence            345666   9999999999992   2 678999999999999973

>KOG3910 consensus Helix loop helix transcription factor [Transcription]

Probab=92.77  E-value=0.1  Score=48.35  Aligned_cols=52  Identities=19%  Similarity=0.192  Sum_probs=40.9

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCC---CC-CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVP---YI-SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP---~~-~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      .++.++..||-|-   ||-|++|-.+.-   .. ....|.-||-.|+.-|-.||+||.|
T Consensus       526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE  584 (632)
T KOG3910|consen  526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE  584 (632)
T ss_pred             HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence            4556666777664   999999988764   22 3347899999999999999999986

>PLN03217 transcription factor ATBS1; Provisional

Probab=92.72  E-value=0.19  Score=36.56  Aligned_cols=38  Identities=29%  Similarity=0.606  Sum_probs=31.3

Q ss_pred             HHhHHHHHhcCCCC------CCcchhhhHHHHHHHHHHHHHHhh
Q 043478          107 NEKFMLLRSVVPYI------SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus       107 ne~f~~LrslvP~~------~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      |+-...|++|+|..      .|..-+-+|.+|-.||+.|.++|.
T Consensus        23 ~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvD   66 (93)
T PLN03217         23 NDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVD   66 (93)
T ss_pred             HHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHH
Confidence            77889999999954      344445689999999999999885

>KOG4447 consensus Transcription factor TWIST [Transcription]

Probab=87.81  E-value=0.34  Score=38.77  Aligned_cols=46  Identities=22%  Similarity=0.358  Sum_probs=38.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHH
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLK  140 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq  140 (145)
                      ...|++.||+|-   |+-|.+||.++|..  .|..|.--|.-|-.||..|=
T Consensus        79 rv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~  129 (173)
T KOG4447|consen   79 RVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLY  129 (173)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhh
Confidence            456899999999   99999999999966  67788888888888887664

>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]

Probab=83.89  E-value=0.84  Score=43.01  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=34.4

Q ss_pred             hhhhHHHHhH--HHhHHHHHhcCCC----CCCcchhhhHHHHHHHHH
Q 043478           97 EHVSLDKRTK--NEKFMLLRSVVPY----ISEVDKASILNDTIKYLK  137 (145)
Q Consensus        97 ~h~~~ERrRR--ne~f~~LrslvP~----~~K~dKaSIL~daI~Yik  137 (145)
                      +-+.+-|-|.  |-.+..|.+|+|.    ++|.||.|||.=++.|++
T Consensus        29 kSNPSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr   75 (712)
T KOG3560|consen   29 KSNPSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR   75 (712)
T ss_pred             cCCcchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence            4455666555  9999999999995    489999999999999986

>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]

Probab=83.80  E-value=0.75  Score=38.59  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHH
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKA  141 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~  141 (145)
                      +..=+..||+|-   |+-|..||.++|..   .|+.|+-.|.-|=.||..|++
T Consensus        73 R~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~  125 (254)
T KOG3898|consen   73 RLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE  125 (254)
T ss_pred             cccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence            444566788777   99999999999933   788999999999999998874

>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]

Probab=80.39  E-value=1.7  Score=39.92  Aligned_cols=32  Identities=44%  Similarity=0.592  Sum_probs=28.6

Q ss_pred             HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHH
Q 043478          107 NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKR  138 (145)
Q Consensus       107 ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~  138 (145)
                      |-.|..|..++|-.    +..||+||+.=|-.|||-
T Consensus        17 N~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm   52 (598)
T KOG3559|consen   17 NYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM   52 (598)
T ss_pred             cchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence            99999999999932    678999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	9e-05

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 37.7 bits (88), Expect = 9e-05
 Identities = 9/40 (22%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 107 NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVEE 145
           N+K + L+ +V    ++++K+++L   I Y++ L+   ++
Sbjct: 22  NDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQK 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.59
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.55
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.54
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.49
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.48
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.47
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.46
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.46
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.45
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.33
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.33
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.22
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.13
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.99
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.85
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.6
4ath_A	83	MITF, microphthalmia-associated transcription fact	98.19
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	98.0

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.59  E-value=8.4e-16  Score=107.22  Aligned_cols=51  Identities=24%  Similarity=0.450  Sum_probs=48.3

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...+|+.+||+||   |++|..|+++||+. .|+|||+||.+||+||++|+.+++
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~   60 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ   60 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999   99999999999998 899999999999999999999886

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.55  E-value=1.6e-15  Score=100.96  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=46.2

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCCC------CcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYIS------EVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~~------K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ..+|+.+||+||   |+.|..|++|||.+.      |++|++||.+||+||++||++.+
T Consensus         6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~   64 (65)
T 1an4_A            6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            468999999999   999999999999874      78999999999999999998765

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.54  E-value=7.2e-15  Score=100.97  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARV  143 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V  143 (145)
                      ...+|+++||+||   |++|..|++|||.. .|+||++||..||+||++||+++
T Consensus         8 kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~   61 (71)
T 4h10_B            8 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEIT   61 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence            4678999999999   99999999999975 69999999999999999999986

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.49  E-value=5e-15  Score=99.13  Aligned_cols=51  Identities=18%  Similarity=0.304  Sum_probs=45.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC-------CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI-------SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~-------~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      ..+|.++||+||   |..|..|++|||.+       +|..||+||+.||+||++||++|+.
T Consensus         3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~~   63 (63)
T 1a0a_A            3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGST   63 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSCC
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhhC
Confidence            468999999999   99999999999954       5667999999999999999998863

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.48  E-value=2.1e-14  Score=101.52  Aligned_cols=52  Identities=21%  Similarity=0.400  Sum_probs=47.5

Q ss_pred             chhhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           93 NFCEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        93 ~~~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      +.+..|+..||+||   |+.|..|+.+||.+   .|++|++||.+||+||++|+.+.+
T Consensus         5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~   62 (88)
T 1nkp_A            5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999   99999999999976   599999999999999999998754

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.47  E-value=2.9e-14  Score=98.92  Aligned_cols=50  Identities=22%  Similarity=0.536  Sum_probs=46.6

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+..||+||   |+.|..|+++||.+  .|++|++||..||+||+.|+.+++
T Consensus         3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~   57 (83)
T 1nkp_B            3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH   57 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999   99999999999974  899999999999999999998765

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.46  E-value=3.5e-14  Score=98.12  Aligned_cols=53  Identities=21%  Similarity=0.499  Sum_probs=48.8

Q ss_pred             cchhhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ......|+..||+||   |+.|..|+++||.+  .|++|++||..||+||+.|+++++
T Consensus        10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~   67 (80)
T 1hlo_A           10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH   67 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            345778999999999   99999999999976  699999999999999999999876

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.46  E-value=5.6e-14  Score=104.10  Aligned_cols=51  Identities=20%  Similarity=0.490  Sum_probs=43.8

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCCC----CcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYIS----EVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~~----K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...+|+++||+||   |++|..|++|||.+.    |++|++||.+||+||++||++++
T Consensus        27 kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~   84 (118)
T 4ati_A           27 KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ   84 (118)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999   999999999999773    78899999999999999998875

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.45  E-value=2.4e-14  Score=98.55  Aligned_cols=48  Identities=29%  Similarity=0.438  Sum_probs=44.1

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHH
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKA  141 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~  141 (145)
                      ...+|+.+||+||   |+.|..|++|||.+    .|+|||+||..||+||+.|+.
T Consensus         9 rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~   63 (73)
T 4h10_A            9 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   63 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence            3568999999999   99999999999965    799999999999999999973

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.33  E-value=3.9e-13  Score=93.06  Aligned_cols=53  Identities=23%  Similarity=0.362  Sum_probs=43.6

Q ss_pred             chhhhhhhHHHHhH---HHhHHHHHhcCCC---CCCc-chhhhHHHHHHHHHHHHHHhhC
Q 043478           93 NFCEEHVSLDKRTK---NEKFMLLRSVVPY---ISEV-DKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        93 ~~~~~h~~~ERrRR---ne~f~~LrslvP~---~~K~-dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      +.+..|+..||+||   |+.|..|+.+||.   ..|. .|++||..||+||+.|+++++|
T Consensus         4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e   63 (76)
T 3u5v_A            4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRE   63 (76)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            34678999999999   9999999999994   3555 6889999999999999999975

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.33  E-value=1.9e-12  Score=90.20  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+..||+||   |+.|..|+++||.+   .|+.|++||..|++||++|+.+.+
T Consensus         2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~   57 (80)
T 1nlw_A            2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999   99999999999965   788999999999999999998764

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.22  E-value=1.2e-11  Score=84.02  Aligned_cols=54  Identities=22%  Similarity=0.358  Sum_probs=48.8

Q ss_pred             cchhhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      ......|+..||+|+   |+.|..||.+||..  .|+.|+.||..||+||..|++.+++
T Consensus        10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~~   68 (68)
T 1mdy_A           10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence            345678999999999   99999999999965  7999999999999999999998865

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.13  E-value=9.6e-11  Score=77.66  Aligned_cols=51  Identities=20%  Similarity=0.226  Sum_probs=46.2

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      ...|+..||+|+   |+.|..||.+||..   .|+.|+.||..||+||..|++.+++
T Consensus         3 R~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~~   59 (60)
T 2ql2_B            3 RMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRS   59 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            456899999999   99999999999965   5899999999999999999998764

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.99  E-value=3.1e-10  Score=94.65  Aligned_cols=49  Identities=22%  Similarity=0.368  Sum_probs=39.4

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCC-CCCCcchhhhHHHHHHHHHHHHHH
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVP-YISEVDKASILNDTIKYLKRLKAR  142 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP-~~~K~dKaSIL~daI~Yik~Lq~~  142 (145)
                      ...+|+.+|||||   |+.|..|++||| ...|+||++||..||.|||.|+..
T Consensus        12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~   64 (361)
T 4f3l_A           12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET   64 (361)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence            3568999999999   999999999999 558999999999999999999864

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.85  E-value=1.7e-09  Score=91.35  Aligned_cols=48  Identities=29%  Similarity=0.445  Sum_probs=44.6

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCC----CCCCcchhhhHHHHHHHHHHHHH
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVP----YISEVDKASILNDTIKYLKRLKA  141 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP----~~~K~dKaSIL~daI~Yik~Lq~  141 (145)
                      ...+|+.+|||||   |+.|..|++|||    ...|+||+|||..||.|||.|+.
T Consensus        13 ~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~   67 (387)
T 4f3l_B           13 AREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG   67 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred             hcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence            4678999999999   999999999999    56899999999999999999974

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.60  E-value=2.1e-08  Score=68.36  Aligned_cols=42  Identities=24%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             hHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHH
Q 043478          100 SLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKA  141 (145)
Q Consensus       100 ~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~  141 (145)
                      ..||+|.   |+-|..||.+||..   .|+.|+-||.-||+||..||.
T Consensus        20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~   67 (68)
T 2lfh_A           20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV   67 (68)
T ss_dssp             CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence            4577776   99999999999976   689999999999999999984

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=98.19  E-value=1.6e-06  Score=61.05  Aligned_cols=38  Identities=21%  Similarity=0.510  Sum_probs=34.2

Q ss_pred             HHhHHHHHhcCCCC----CCcchhhhHHHHHHHHHHHHHHhh
Q 043478          107 NEKFMLLRSVVPYI----SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus       107 ne~f~~LrslvP~~----~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      |+++..|..|||..    .|.+|++||..|++||+.||+.++
T Consensus         8 N~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~   49 (83)
T 4ath_A            8 NDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQ   49 (83)
T ss_dssp             HHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHH
T ss_pred             HHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999964    589999999999999999987653

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=98.00  E-value=8.9e-06  Score=58.68  Aligned_cols=39  Identities=31%  Similarity=0.561  Sum_probs=35.7

Q ss_pred             HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478          107 NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus       107 ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      |+-|..||.+||..   .|+.|+-+|.-||+||..|++-+++
T Consensus        41 N~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~   82 (97)
T 4aya_A           41 NDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS   82 (97)
T ss_dssp             HHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999965   6899999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1uklc_	61	a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId	4e-07
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	8e-05
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	6e-04
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	0.001
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	0.002
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	0.002

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 104 RTK-NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVEE 145
           R+  N+K + L+ +V    +++ K+ +L   I Y+K L+    +
Sbjct: 1   RSSINDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNHK 44

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 8e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 107 NEKFMLLRSVVP--YISEVDKASILNDTIKYLKRLKARVEE 145
           NE F  L+          + K  IL + I+Y++ L+A + +
Sbjct: 28  NEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD 68

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 107 NEKFMLLRSVVPYISE---VDKASILNDTIKYLKRLKARVEE 145
              F  LR  +P +       K  IL     Y+  ++A  ++
Sbjct: 22  KRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQK 63

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 107 NEKFMLLRSVVPYISE---VDKASILNDTIKYLKRLKARVEE 145
                 L+ +VP   +       S+L     ++K+L+    +
Sbjct: 17  RLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRK 58

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (75), Expect = 0.002
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 107 NEKFMLLRSVVPYI------SEVDKASILNDTIKYLKRLKARVE 144
           N   + L  ++P        S   K  IL+    Y++ L+    
Sbjct: 21  NNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 107 NEKFMLLRSVVPYISE--VDKASILNDTIKYLKRLKARVEE 145
            + F  LR  VP +      +A IL+   +Y++ ++ +   
Sbjct: 18  KDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHT 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.53
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.52
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.48
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.39
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.37
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	99.32

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=3e-15  Score=99.58  Aligned_cols=54  Identities=22%  Similarity=0.358  Sum_probs=49.3

Q ss_pred             cchhhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhhC
Q 043478           92 ENFCEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVEE  145 (145)
Q Consensus        92 ~~~~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~e  145 (145)
                      .+....|+..||+||   |+.|..|+++||.+  .|++|++||..||+||++||+.|+|
T Consensus        10 ~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~YI~~Lq~~l~e   68 (68)
T d1mdya_          10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLRD   68 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhC
Confidence            345678999999999   99999999999976  6889999999999999999999986

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.2e-15  Score=97.81  Aligned_cols=50  Identities=18%  Similarity=0.317  Sum_probs=45.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCC-------CCCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPY-------ISEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~-------~~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+.+||+||   |+.|..|++|||.       ..|++|++||..||+||++||++|+
T Consensus         3 R~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~yI~~Lq~~v~   62 (63)
T d1a0aa_           3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS   62 (63)
T ss_dssp             TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHHHHHHHHhhc
Confidence            457999999999   9999999999993       4799999999999999999999874

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-14  Score=98.98  Aligned_cols=51  Identities=24%  Similarity=0.450  Sum_probs=47.5

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ....|+.+||+||   |+.|..|++|||+. .|++|++||..||+||+.|+++++
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~   60 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQ   60 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999   99999999999986 799999999999999999999875

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.9e-14  Score=94.77  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=45.9

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+..||+||   |+.|..|+++||..   .|++|++||..||+||++|+.+++
T Consensus         2 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~   57 (79)
T d1nlwa_           2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDR   57 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999   99999999999964   589999999999999999998875

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-13  Score=94.21  Aligned_cols=50  Identities=22%  Similarity=0.536  Sum_probs=46.1

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC--CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI--SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~--~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ..+|+.+||+||   |+.|..|+++||+.  .|++|++||..||+||+.|+.+++
T Consensus         3 R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~yI~~L~~~~~   57 (83)
T d1nkpb_           3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNH   57 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999   99999999999964  789999999999999999988764

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.6e-14  Score=91.94  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=45.2

Q ss_pred             hhhhhhHHHHhH---HHhHHHHHhcCCCC------CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           95 CEEHVSLDKRTK---NEKFMLLRSVVPYI------SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        95 ~~~h~~~ERrRR---ne~f~~LrslvP~~------~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ...|+.+||+||   |+.|..|+++||.+      .|++|++||..||+||++||++.+
T Consensus         6 R~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~yI~~Lq~~~~   64 (65)
T d1an4a_           6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH   64 (65)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence            467999999999   99999999999954      499999999999999999997653

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-13  Score=94.58  Aligned_cols=51  Identities=22%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             hhhhhhhHHHHhH---HHhHHHHHhcCCCC---CCcchhhhHHHHHHHHHHHHHHhh
Q 043478           94 FCEEHVSLDKRTK---NEKFMLLRSVVPYI---SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus        94 ~~~~h~~~ERrRR---ne~f~~LrslvP~~---~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      ....|+..||+||   |+.|..|+++||+.   .|++|++||..||+||+.|+++++
T Consensus         6 rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~L~~~~~   62 (88)
T d1nkpa_           6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQ   62 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999   99999999999964   689999999999999999998875

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.1e-13  Score=87.83  Aligned_cols=38  Identities=26%  Similarity=0.451  Sum_probs=36.4

Q ss_pred             HHhHHHHHhcCCCC-CCcchhhhHHHHHHHHHHHHHHhh
Q 043478          107 NEKFMLLRSVVPYI-SEVDKASILNDTIKYLKRLKARVE  144 (145)
Q Consensus       107 ne~f~~LrslvP~~-~K~dKaSIL~daI~Yik~Lq~~V~  144 (145)
                      |++|..|+++||++ +|+|||+||.+||+||+.||++++
T Consensus         5 n~~f~~L~~lvP~~~~K~~Ka~iL~~Ai~YI~~Lq~~~~   43 (61)
T d1uklc_           5 NDKIIELKDLVMGTDAKMHKSGVLRKAIDYIKYLQQVNH   43 (61)
T ss_dssp             HHHHHHHHHHHSCSSCCCCTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999987 699999999999999999999986