Citrus Sinensis ID: 043481

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccEEEccccEEEHHccccHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccEEEEEEHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHcccccHccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLaskdrsshllvfnedlfflyllppiifnagFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTlqvlsqdetpflYSIVFGEGVVNDATSIVLFNAiqsfdfnnidGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRhstdregaPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDidkwkasnarniFAVSSTMFSL
Flexible Loop (DISEMBL)
MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAvsstmfsl
Low Complexity Region (SEG)
MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITalllglcaggvvllaSKDRSSHLLVFNEDlfflyllppiifNAGfqvkkkqffknfTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Disordered region (IsUnstruct)
***********ALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAV*******
Disordered Region (DISOPRED)
*****************SFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Disordered Region (DISEMBL)
********QLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Disordered Region (DISPRO)
********QLSA*****SFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
Q56XP4	546	Sodium/hydrogen exchanger	yes	no	0.974	0.626	0.665	1e-131
Q68KI4	538	Sodium/hydrogen exchanger	no	no	0.943	0.615	0.681	1e-126
Q84WG1	503	Sodium/hydrogen exchanger	no	no	0.891	0.622	0.677	1e-125
Q8S397	529	Sodium/hydrogen exchanger	no	no	0.891	0.591	0.642	1e-117
Q5ZJ75	574	Sodium/hydrogen exchanger	yes	no	0.843	0.515	0.349	8e-43
Q9Y2E8	581	Sodium/hydrogen exchanger	yes	no	0.843	0.509	0.349	4e-42
Q4L208	575	Sodium/hydrogen exchanger	yes	no	0.843	0.514	0.346	1e-41
Q8R4D1	576	Sodium/hydrogen exchanger	yes	no	0.843	0.513	0.346	1e-41
Q04121	633	Endosomal/prevacuolar sod	yes	no	0.786	0.436	0.327	1e-37
Q552S0	674	Sodium/hydrogen exchanger	yes	no	0.743	0.387	0.343	3e-35

>sp|Q56XP4|NHX2_ARATH Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=1 SV=2

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/344 (66%), Positives = 280/344 (81%), Gaps = 2/344 (0%)

Query: 10  LSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVL 69
           L++  +S S  + +++++L++F  LLCACI+IGHL+EENRW NESITALL+GL  G V+L
Sbjct: 7   LTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVIL 66

Query: 70  LASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYL 129
           L S+ ++SHLLVF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T++ FG  GTV+S  +
Sbjct: 67  LISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCTI 126

Query: 130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVN 189
           IS+GA   FKK+ + +  + DFLAIGAI +ATDSVCTLQVL+QDETP LYS+VFGEGVVN
Sbjct: 127 ISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVN 186

Query: 190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLR 249
           DATS+VLFNAIQSFD  +++   A   LG F YL+  ST LG+  GL+SAY+IK LYF R
Sbjct: 187 DATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYFGR 246

Query: 250 HSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFA 309
           HSTDRE A MMLMAYLS +LAEL  LSGILT+FFCGI+MSHYTWHNVTESSRITTKHAFA
Sbjct: 247 HSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFA 306

Query: 310 TISFIAETFIFLYVFMDALDIDKWK--ASNARNIFAVSSTMFSL 351
           T+SF+AETFIFLYV MDALDI+KW+  + +     AVSS +  L
Sbjct: 307 TLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGL 350

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification.
Arabidopsis thaliana (taxid: 3702)

>sp|Q68KI4|NHX1_ARATH Sodium/hydrogen exchanger 1 OS=Arabidopsis thaliana GN=NHX1 PE=1 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/333 (68%), Positives = 274/333 (82%), Gaps = 2/333 (0%)

Query: 21  NTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLL 80
           + ++++AL++F  LLCACI++GHL+EENRW NESITALL+GL  G  +LL SK +SSHLL
Sbjct: 16  DHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGVTILLISKGKSSHLL 75

Query: 81  VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKK 140
           VF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T++LFG  GT+IS  +IS+G    FKK
Sbjct: 76  VFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIISCTIISLGVTQFFKK 135

Query: 141 MGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAI 200
           + + +  + D+LAIGAI +ATDSVCTLQVL+QDETP LYS+VFGEGVVNDATS+V+FNAI
Sbjct: 136 LDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVVFNAI 195

Query: 201 QSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMM 260
           QSFD  +++   A +LLG FLYL+  ST LG   GL+SAY+IK LYF RHSTDRE A MM
Sbjct: 196 QSFDLTHLNHEAAFHLLGNFLYLFLLSTLLGAATGLISAYVIKKLYFGRHSTDREVALMM 255

Query: 261 LMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIF 320
           LMAYLS +LAEL +LSGILT+FFCGI+MSHYTWHNVTESSRITTKH FAT+SF+AETFIF
Sbjct: 256 LMAYLSYMLAELFDLSGILTVFFCGIVMSHYTWHNVTESSRITTKHTFATLSFLAETFIF 315

Query: 321 LYVFMDALDIDKWK--ASNARNIFAVSSTMFSL 351
           LYV MDALDIDKW+  +       AVSS +  L
Sbjct: 316 LYVGMDALDIDKWRSVSDTPGTSIAVSSILMGL 348

Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. Can also exchange Li(+) and Cs(+) with a lower affinity. Involved in vacuolar ion compartmentalization necessary for cell volume regulation and cytoplasmic Na(+) detoxification. Required during leaves expansion, probably to stimulate epidermal cell expansion. Confers competence to grow in high salinity conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG1|NHX3_ARATH Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/313 (67%), Positives = 260/313 (83%)

Query: 21  NTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLL 80
           + ++++++++F  LLCACI++GHL+EE RW NESITAL++G C G V+LL S  +SS +L
Sbjct: 19  DHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGSCTGIVILLISGGKSSRIL 78

Query: 81  VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKK 140
           VF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T++LFG  GT+ISF +IS GA  +F+K
Sbjct: 79  VFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISFGAKHLFEK 138

Query: 141 MGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAI 200
           M +  L I D+LAIGAI SATDSVCTLQVL+QDETP LYS+VFGEGVVNDATS+VLFNAI
Sbjct: 139 MNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAI 198

Query: 201 QSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMM 260
           Q FD  NI+  +AL   G F YL+  STALG+  GLLSA++IK LY  RHSTDRE A MM
Sbjct: 199 QRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVIKKLYIGRHSTDREVALMM 258

Query: 261 LMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIF 320
           L+AYLS +LAEL +LS ILT+FFCGI+MSHYTWHNVT+ S++TTKH FA +SF+AE FIF
Sbjct: 259 LLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKVTTKHTFAAMSFLAEIFIF 318

Query: 321 LYVFMDALDIDKW 333
           LYV MDALDI+KW
Sbjct: 319 LYVGMDALDIEKW 331

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S397|NHX4_ARATH Sodium/hydrogen exchanger 4 OS=Arabidopsis thaliana GN=NHX4 PE=2 SV=2

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/313 (64%), Positives = 254/313 (81%)

Query: 25  IIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNE 84
           +I +SVF  +LC C++IGHL+EENRW NESITA+L+G  +G V+LL SK +SSH+LVF+E
Sbjct: 20  VIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVILLISKGKSSHILVFDE 79

Query: 85  DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMT 144
           +LFF+YLLPPIIFNAGFQVKKK+FF NF T++ FG+ G  IS  +IS G + +F K+G  
Sbjct: 80  ELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVIISFGTWWLFPKLGFK 139

Query: 145 SLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFD 204
            L  +D+LAIG I S+TD+VCTLQ+L QDETP LYS+VFGEGVVNDATS+VLFNA+Q   
Sbjct: 140 GLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIQ 199

Query: 205 FNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY 264
           F ++ G  AL + G FLYL+ TST LGI +GL++++++KTLYF RHST RE A M+LMAY
Sbjct: 200 FESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGRHSTTRELAIMVLMAY 259

Query: 265 LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVF 324
           LS +LAEL +LSGILT+FFCG++MSHY  +NVTESSRIT++H FA +SFIAETFIFLYV 
Sbjct: 260 LSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFAMLSFIAETFIFLYVG 319

Query: 325 MDALDIDKWKASN 337
            DALD  KWK S+
Sbjct: 320 TDALDFTKWKTSS 332

May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZJ75|SL9A8_CHICK Sodium/hydrogen exchanger 8 OS=Gallus gallus PE=2 SV=1

 Score =  174 bits (441), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 179/309 (57%), Gaps = 13/309 (4%)

Query: 27  ALSVFFTLL--CACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSSHLL-- 80
            +++FF+LL    CII+ HL+ + R  +  ES+  + LG+  G  + +    + ++    
Sbjct: 52  GMTIFFSLLVLAICIILVHLLIKYRLHFLPESVAVVSLGIIMGAFIKIIEAQKLANWKEE 111

Query: 81  -VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK 139
            +F  ++FFL LLPPIIF +G+ + K  FF+N  ++ LF + GT IS +++  G + + +
Sbjct: 112 EMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFSVFGTAISAFIVGGGIYFLGQ 171

Query: 140 KMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ-DETPFLYSIVFGEGVVNDATSIVLFN 198
              +  L + D  A G+++SA D V T+ + +  +  P L  +VFGE ++NDA SIVL N
Sbjct: 172 ADVIYKLNMTDSFAFGSLISAVDPVATIAIFNALNVDPVLNMLVFGESILNDAVSIVLTN 231

Query: 199 AIQSFDFNNIDGTVA----LNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDR 254
             +     N+         L  LG FL ++F S ALG + GL+SA ++K +  LR +   
Sbjct: 232 TAEGLTRENMSDVSGWQTFLQALGYFLKMFFGSAALGTLTGLISALVLKHID-LRKTPSL 290

Query: 255 EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFI 314
           E   M++ AYL   LAE ++LSGI+ I F GI+MSHYT HN++  ++I  +    T++F+
Sbjct: 291 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFM 350

Query: 315 AETFIFLYV 323
            ET +F ++
Sbjct: 351 CETCVFAFL 359

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Gallus gallus (taxid: 9031)

>sp|Q9Y2E8|SL9A8_HUMAN Sodium/hydrogen exchanger 8 OS=Homo sapiens GN=SLC9A8 PE=1 SV=4

 Score =  172 bits (435), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/309 (34%), Positives = 178/309 (57%), Gaps = 13/309 (4%)

Query: 27  ALSVFFTLL--CACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSSHLL-- 80
            +++FF+LL    CII+ HL+   R  +  ES+  + LG+  G V+ +    + ++    
Sbjct: 59  GMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKIIEFKKLANWKEE 118

Query: 81  -VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK 139
            +F  ++FFL LLPPIIF +G+ + K  FF+N  ++ LF + GT IS +++  G + + +
Sbjct: 119 EMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQ 178

Query: 140 KMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ-DETPFLYSIVFGEGVVNDATSIVLFN 198
              ++ L + D  A G+++SA D V T+ + +     P L  +VFGE ++NDA SIVL N
Sbjct: 179 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 238

Query: 199 AIQSFDFNNIDGTVA----LNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDR 254
             +     N+         L  L  FL ++F S ALG + GL+SA ++K +  LR +   
Sbjct: 239 TAEGLTRKNMSDVSGWQTFLQALDYFLKMFFGSAALGTLTGLISALVLKHID-LRKTPSL 297

Query: 255 EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFI 314
           E   M++ AYL   LAE ++LSGI+ I F GI+MSHYT HN++  ++I  +    T++F+
Sbjct: 298 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 357

Query: 315 AETFIFLYV 323
            ET +F ++
Sbjct: 358 CETCVFAFL 366

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Homo sapiens (taxid: 9606)

>sp|Q4L208|SL9A8_RAT Sodium/hydrogen exchanger 8 OS=Rattus norvegicus GN=Slc9a8 PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 13/309 (4%)

Query: 27  ALSVFFTLL--CACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSSHLL-- 80
            +++FF+LL    CII+ HL+   R  +  ES+  + LG+  G V+ +    + ++    
Sbjct: 53  GMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEE 112

Query: 81  -VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK 139
            +F  ++FFL LLPPIIF +G+ + K  FF+N  ++ LF + GT IS +++  G + + +
Sbjct: 113 EMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQ 172

Query: 140 KMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ-DETPFLYSIVFGEGVVNDATSIVLFN 198
              ++ L + D  A G+++SA D V T+ + +     P L  +VFGE ++NDA SIVL N
Sbjct: 173 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 232

Query: 199 AIQSFDFNNIDGTVALNL----LGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDR 254
             +     ++            LG FL ++F S ALG + GL+SA ++K +  LR +   
Sbjct: 233 TAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHID-LRKTPSL 291

Query: 255 EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFI 314
           E   M++ AYL   LAE ++LSGI+ I F GI+MSHYT HN++  ++I  +    T++F+
Sbjct: 292 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 351

Query: 315 AETFIFLYV 323
            ET +F ++
Sbjct: 352 CETCVFAFL 360

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|Q8R4D1|SL9A8_MOUSE Sodium/hydrogen exchanger 8 OS=Mus musculus GN=Slc9a8 PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 178/309 (57%), Gaps = 13/309 (4%)

Query: 27  ALSVFFTLL--CACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSSHLL-- 80
            +++FF+LL    CII+ HL+   R  +  ES+  + LG+  G V+ +    + ++    
Sbjct: 54  GMTIFFSLLVLAICIILVHLLIRYRLHFLPESVAVVSLGILMGAVIKVIEFKKLANWKEE 113

Query: 81  -VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK 139
            +F  ++FFL LLPPIIF +G+ + K  FF+N  ++ LF + GT IS +++  G + + +
Sbjct: 114 EMFRPNMFFLLLLPPIIFESGYSLHKGNFFQNIGSITLFAVFGTAISAFVVGGGIYFLGQ 173

Query: 140 KMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ-DETPFLYSIVFGEGVVNDATSIVLFN 198
              ++ L + D  A G+++SA D V T+ + +     P L  +VFGE ++NDA SIVL N
Sbjct: 174 ADVISKLNMTDSFAFGSLISAVDPVATIAIFNALHVDPVLNMLVFGESILNDAVSIVLTN 233

Query: 199 AIQSFDFNNIDGTVALNL----LGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDR 254
             +     ++            LG FL ++F S ALG + GL+SA ++K +  LR +   
Sbjct: 234 TAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSAALGTLTGLISALVLKHID-LRKTPSL 292

Query: 255 EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFI 314
           E   M++ AYL   LAE ++LSGI+ I F GI+MSHYT HN++  ++I  +    T++F+
Sbjct: 293 EFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVMSHYTHHNLSPVTQILMQQTLRTVAFL 352

Query: 315 AETFIFLYV 323
            ET +F ++
Sbjct: 353 CETCVFAFL 361

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Mus musculus (taxid: 10090)

>sp|Q04121|NHX1_YEAST Endosomal/prevacuolar sodium/hydrogen exchanger OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NHX1 PE=1 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 164/281 (58%), Gaps = 5/281 (1%)

Query: 49  RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQF 108
           R  +E++ ++  G+  G ++ ++        + FN   FF  LLPPII N+G+++ +  F
Sbjct: 87  RAVHETVLSIFYGMVIGLIIRMSPGHYIQDTVTFNSSYFFNVLLPPIILNSGYELNQVNF 146

Query: 109 FKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQ--DFLAIGAILSATDSVCT 166
           F N  ++L+F I GT IS  +I +  + I+  +G+ S+ I   D +++GA LSATD V  
Sbjct: 147 FNNMLSILIFAIPGTFISAVVIGIILY-IWTFLGLESIDISFADAMSVGATLSATDPVTI 205

Query: 167 LQVLSQDET-PFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYF 225
           L + +  +  P LY+I+FGE ++NDA SIV+F   Q F       +      G FL  + 
Sbjct: 206 LSIFNAYKVDPKLYTIIFGESLLNDAISIVMFETCQKFHGQPATFSSVFEGAGLFLMTFS 265

Query: 226 TSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCG 285
            S  +G+++G+L A ++K  +  R+    E   ++L+AY S   +   ++SGI+++ FCG
Sbjct: 266 VSLLIGVLIGILVALLLKHTHIRRYP-QIESCLILLIAYESYFFSNGCHMSGIVSLLFCG 324

Query: 286 IIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMD 326
           I + HY ++N++  S+IT K+ F  ++ ++E FIF+Y+ ++
Sbjct: 325 ITLKHYAYYNMSRRSQITIKYIFQLLARLSENFIFIYLGLE 365

Endosomal/prevacuolar electroneutral Na(+)/H(+) exchanger which mediates intracellular sequestration of Na(+) cations, regulates vacuolar pH and contributes to osmotolerance following sudden exposure to hyperosmotic media. Contributes also to the postdiauxic/stationary phase resistance to osmotic stress and allows for the continued growth of cells until the acquired osmotolerance response can occur. Involved in hygromycin resistance probably through its influence on the electrochemical proton gradient affecting secondarily the entrance of hygromycin. Mediates pH-dependent vesicle trafficking out of the endosome. Contributes to K(+) sequestration and homeostasis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q552S0|NHE1_DICDI Sodium/hydrogen exchanger 1 OS=Dictyostelium discoideum GN=nhe1 PE=2 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 163/274 (59%), Gaps = 13/274 (4%)

Query: 53  ESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF 112
           ES+  +  G+  G V      D  +H++ F  + FFL++LP IIF  G+ + K  FF N 
Sbjct: 149 ESVAVVTYGIILGIVFRFFYSDIVNHVVSFEPENFFLFILPTIIFETGYSLHKTDFFNNI 208

Query: 113 TTMLLFGICGTVISFYLISVGAFSIFKKMGMT-SLRIQDFLAIGAILSATDSVCTL---Q 168
             +L+F + GT+I+F ++  G + I    G++ +L ++D  A G+I+S+TD VCTL   Q
Sbjct: 209 GPILMFAVFGTIITFLVVGFGIY-IVGYFGVSIALSLKDSFAFGSIISSTDPVCTLAIFQ 267

Query: 169 VLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTST 228
            L+ D  P LY +V GE ++NDATS++L++ ++     +I  + A+     F  +   S 
Sbjct: 268 ALNVD--PMLYILVLGESILNDATSMMLYSVVEDTSTRDIIISCAM-----FTVVAIGSV 320

Query: 229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
            LG+V+ LL + I+K +   +     E   M++ +Y+S +LA  L++SG+L +FF GI +
Sbjct: 321 ILGVVMALLLSLILKWINIGKFPA-LETIFMVMFSYMSYVLAGALDISGVLAVFFFGITL 379

Query: 289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLY 322
           + Y  ++++  +++T+   F T +FI+ETF+FLY
Sbjct: 380 NQYGAYSLSPYTKLTSGQLFRTAAFISETFLFLY 413

Regulation of intracellular pH homeostasis in response to cAMP, which is essential for chemotaxis. Necessary for F-actin localization and the kinetics of actin polymerization during chemotaxis and cell polarity but not for directional sensing.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
255542542	709	sodium/hydrogen exchanger, putative [Ric	0.997	0.493	0.801	1e-154
255317077	555	Na+/H+ exchanger 5 [Populus euphratica]	0.988	0.625	0.784	1e-152
359487770	541	PREDICTED: sodium/hydrogen exchanger 2-l	0.951	0.617	0.781	1e-150
357441573	579	Sodium/hydrogen exchanger [Medicago trun	0.931	0.564	0.784	1e-143
302334775	553	Na+/H+ antiporter protein [Fagopyrum tat	0.985	0.625	0.75	1e-142
158935521	549	Na+/H+ antiporter [Mesembryanthemum crys	0.945	0.604	0.724	1e-137
414888015	539	TPA: sodium/hydrogen exchanger [Zea mays	0.928	0.604	0.711	1e-134
333033744	538	Na+/H+ exchanger [Puccinellia tenuiflora	0.928	0.605	0.714	1e-134
242046844	442	hypothetical protein SORBIDRAFT_02g04219	0.928	0.737	0.711	1e-134
357121559	543	PREDICTED: sodium/hydrogen exchanger 2-l	0.894	0.578	0.726	1e-134

>gi|255542542|ref|XP_002512334.1| sodium/hydrogen exchanger, putative [Ricinus communis] gi|223548295|gb|EEF49786.1| sodium/hydrogen exchanger, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 283/353 (80%), Positives = 313/353 (88%), Gaps = 3/353 (0%)

Query: 1   MAPHETLQQLSALKVSAS-FLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALL 59
           MA HET+  L  L+  +S FL TST+IALSVFF LLCACIIIGHL+EENRWANESITALL
Sbjct: 166 MASHETISLLLPLQQLSSSFLTTSTVIALSVFFALLCACIIIGHLLEENRWANESITALL 225

Query: 60  LGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFG 119
           LGLCAGGVVLL +K ++S LLVF+EDLFFLYLLPPIIFNAGFQVKKK FFKNFTT+LLFG
Sbjct: 226 LGLCAGGVVLLITKGKNSRLLVFSEDLFFLYLLPPIIFNAGFQVKKKHFFKNFTTILLFG 285

Query: 120 ICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLY 179
           I GTVISF LIS+GAF +FK++G TS+ IQDFLA GAILSATDSVCTLQVLSQDETPFLY
Sbjct: 286 ILGTVISFCLISLGAFLLFKRIGFTSMDIQDFLAAGAILSATDSVCTLQVLSQDETPFLY 345

Query: 180 SIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSA 239
           S+VFGEGVVNDATSIVL+NA+QS +F+NIDGT+AL LLG F YL+FTSTALG+ +GLLSA
Sbjct: 346 SVVFGEGVVNDATSIVLYNAVQSMNFDNIDGTIALKLLGNFFYLFFTSTALGLGVGLLSA 405

Query: 240 YIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTES 299
           +IIKTLYF RHSTDRE A MMLMAY S +LAELLNLSGILT+FFCGI+MSHYTWHNVTES
Sbjct: 406 FIIKTLYFGRHSTDREVALMMLMAYSSYMLAELLNLSGILTVFFCGIVMSHYTWHNVTES 465

Query: 300 SRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNAR--NIFAVSSTMFS 350
           SRITTKHAFATISFI+ETFIFLYV MDA DI KWK SNA      AVSST+FS
Sbjct: 466 SRITTKHAFATISFISETFIFLYVGMDAFDIQKWKGSNASAGTFMAVSSTLFS 518

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255317077|gb|ACU01856.1| Na+/H+ exchanger 5 [Populus euphratica]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 277/353 (78%), Positives = 308/353 (87%), Gaps = 6/353 (1%)

Query: 1   MAPHETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLL 60
           M+ HE L     L + +SFLNTSTIIAL VFF LLCACI IGHL+EENRWANESITALLL
Sbjct: 18  MSSHEHL----PLGLDSSFLNTSTIIALCVFFALLCACITIGHLLEENRWANESITALLL 73

Query: 61  GLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGI 120
           GLCAGGVVLL  K  SSHLL F+EDLFFLYLLPPIIFNAGFQVKKK+FFKNF+T+LLFGI
Sbjct: 74  GLCAGGVVLLVRKGESSHLLKFSEDLFFLYLLPPIIFNAGFQVKKKRFFKNFSTILLFGI 133

Query: 121 CGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYS 180
            GTVISF +IS+G F IF+K+G+ SL ++D LAIGAI+SATDSVCTLQVLSQDETPFLYS
Sbjct: 134 FGTVISFCIISLGVFWIFRKIGVKSLSLKDHLAIGAIMSATDSVCTLQVLSQDETPFLYS 193

Query: 181 IVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAY 240
           I FGEGVVNDATSIVLFN++Q+ DF+NIDG   L L+GTFLYL FTSTALGI +GLLSA+
Sbjct: 194 IGFGEGVVNDATSIVLFNSVQTLDFHNIDGLTVLKLIGTFLYLLFTSTALGIAVGLLSAF 253

Query: 241 IIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESS 300
           IIKTLYF RHSTDRE A M+LMAYLS +LAELLNLSGILT+FFCGI+MSHYTWHNVTESS
Sbjct: 254 IIKTLYFGRHSTDREFALMILMAYLSYLLAELLNLSGILTVFFCGIVMSHYTWHNVTESS 313

Query: 301 RITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNAR--NIFAVSSTMFSL 351
           RITTKHAFAT+SFIAETFIFLYV MDALDIDKW+ S A      AVSST+F+L
Sbjct: 314 RITTKHAFATMSFIAETFIFLYVGMDALDIDKWRESKASAGTSAAVSSTLFAL 366

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487770|ref|XP_002281198.2| PREDICTED: sodium/hydrogen exchanger 2-like [Vitis vinifera] gi|296088287|emb|CBI36732.3| unnamed protein product [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/334 (78%), Positives = 301/334 (90%)

Query: 5   ETLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCA 64
           + +    +L+ S+SFLNT+T+IAL +FF LLCACI+IGHL+EE+RWANESITALLLGLCA
Sbjct: 5   DAIPNKHSLQDSSSFLNTTTVIALCLFFALLCACIVIGHLLEEHRWANESITALLLGLCA 64

Query: 65  GGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTV 124
           G VVLL SK RSS +L FNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF+ +L+FG+ GT+
Sbjct: 65  GVVVLLVSKGRSSKILAFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFSIILMFGVFGTI 124

Query: 125 ISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFG 184
           ISF LIS GAF +FKK+G+T+L I+D+LA+GAILSATDSVCTLQVL+Q+ETPFLYS+VFG
Sbjct: 125 ISFCLISAGAFLLFKKIGITTLNIEDYLAVGAILSATDSVCTLQVLNQEETPFLYSVVFG 184

Query: 185 EGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT 244
           EGVVNDATSIV++NA+QS D +NID   AL LLGTFLYL+FTST LG+V GLLSAYIIKT
Sbjct: 185 EGVVNDATSIVIYNAVQSLDLSNIDALTALKLLGTFLYLFFTSTILGVVAGLLSAYIIKT 244

Query: 245 LYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITT 304
           LYF RHSTDRE A MM+MAYLS +LAELL+LSGILT+FFCGI+MSHYTWHNVTESSRITT
Sbjct: 245 LYFGRHSTDREVALMMIMAYLSYMLAELLSLSGILTVFFCGIVMSHYTWHNVTESSRITT 304

Query: 305 KHAFATISFIAETFIFLYVFMDALDIDKWKASNA 338
           KHAFATISFIAETFIFLYV MDALDIDKW++S A
Sbjct: 305 KHAFATISFIAETFIFLYVGMDALDIDKWRSSKA 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441573|ref|XP_003591064.1| Sodium/hydrogen exchanger [Medicago truncatula] gi|355480112|gb|AES61315.1| Sodium/hydrogen exchanger [Medicago truncatula]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/329 (78%), Positives = 294/329 (89%), Gaps = 2/329 (0%)

Query: 25  IIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNE 84
           I++L VFF LLCACII+GHL+EE RWA+ESI ALLLGLC+G VVLL +K RS+ +L+FNE
Sbjct: 23  IVSLCVFFALLCACIIVGHLLEEYRWASESIIALLLGLCSGVVVLLVTKFRSTEILIFNE 82

Query: 85  DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMT 144
           DLFFLYLLPPIIFNAGFQVKKKQFF+NFTT+LLFG+ GTVISF +ISVGAF +F ++G+T
Sbjct: 83  DLFFLYLLPPIIFNAGFQVKKKQFFRNFTTILLFGVLGTVISFCVISVGAFLLFNRIGIT 142

Query: 145 SLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFD 204
           +L I+D LAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFN++QS +
Sbjct: 143 NLSIKDHLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNSVQSLN 202

Query: 205 FNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY 264
           F++I+   AL LLGTFLYL+ TSTALG+V+GLLSAYIIKTLYF RHSTDRE A MMLMAY
Sbjct: 203 FDSINAITALKLLGTFLYLFCTSTALGVVVGLLSAYIIKTLYFGRHSTDREVALMMLMAY 262

Query: 265 LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVF 324
           LS ++AELLNLSGILTIFFCGI+MSHYTWHNVT SSRITTKHAFATISFIAETFIF+YV 
Sbjct: 263 LSYMIAELLNLSGILTIFFCGIVMSHYTWHNVTGSSRITTKHAFATISFIAETFIFVYVG 322

Query: 325 MDALDIDKWKASNAR--NIFAVSSTMFSL 351
           M+ALDIDKWK S A      AVSST+ +L
Sbjct: 323 MEALDIDKWKRSKASIGTSVAVSSTLIAL 351

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302334775|gb|ADL27439.1| Na+/H+ antiporter protein [Fagopyrum tataricum]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 261/348 (75%), Positives = 308/348 (88%), Gaps = 2/348 (0%)

Query: 6   TLQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAG 65
           TL  L + K+  S  NT+T+IA++VFF+LLCACIIIGHL+EE+RWANESITALLLGL +G
Sbjct: 3   TLIDLLSSKLQNSSFNTTTVIAITVFFSLLCACIIIGHLLEEHRWANESITALLLGLISG 62

Query: 66  GVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVI 125
           GVVLL SK +SS +L F+E+LFF+YLLPPIIFNAGFQVKKKQFFKNF+T+LLFG+ GT+I
Sbjct: 63  GVVLLFSKGQSSQILEFSEELFFIYLLPPIIFNAGFQVKKKQFFKNFSTILLFGVLGTII 122

Query: 126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGE 185
           SF LIS+GAF +FK++G+T L +QD+LA+GAILSATDSVCTLQVLSQD+TP LYSIVFGE
Sbjct: 123 SFCLISLGAFLLFKRLGVTELDLQDYLAVGAILSATDSVCTLQVLSQDDTPLLYSIVFGE 182

Query: 186 GVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTL 245
           GVVNDATSIVLFNAIQS DF+ +  T AL+L+GTFLYL+FTST LG+ +GLLSA+IIKTL
Sbjct: 183 GVVNDATSIVLFNAIQSLDFSEVSATTALSLIGTFLYLFFTSTLLGLTVGLLSAFIIKTL 242

Query: 246 YFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTK 305
           Y  RHSTDRE A MMLMAYLS ++ EL++LSGILT+FFCGI+MSHYTWHN+TESSRITTK
Sbjct: 243 YIGRHSTDREIAIMMLMAYLSYMITELIDLSGILTVFFCGIVMSHYTWHNITESSRITTK 302

Query: 306 HAFATISFIAETFIFLYVFMDALDIDKWKASNAR--NIFAVSSTMFSL 351
           HAFAT+SFIAETFIFLYV MDALDIDKWK SNA     FAVS+T+ +L
Sbjct: 303 HAFATMSFIAETFIFLYVGMDALDIDKWKDSNASAGTSFAVSATLLAL 350

Source: Fagopyrum tataricum

Species: Fagopyrum tataricum

Genus: Fagopyrum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158935521|emb|CAP16138.1| Na+/H+ antiporter [Mesembryanthemum crystallinum]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/334 (72%), Positives = 287/334 (85%), Gaps = 2/334 (0%)

Query: 17  ASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRS 76
           AS   TS ++++SVFF+L+C CI+IGHL+E+NRWANESI +LLLGL +G +VL+ SK +S
Sbjct: 19  ASPTETSVVVSISVFFSLICLCIVIGHLLEKNRWANESIASLLLGLVSGAIVLVLSKGQS 78

Query: 77  SHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFS 136
           S +LVFNE+LFF+YLLPPIIFNAGFQVKKKQFFKNF+ +L+FG+ GT+ISF LIS GA  
Sbjct: 79  SRILVFNEELFFIYLLPPIIFNAGFQVKKKQFFKNFSFILMFGVLGTIISFCLISSGAVL 138

Query: 137 IFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVL 196
           + KK+G+T L + D+LA+GAI SATDSVCTLQVL+QDETP LYSIVFGEGVVNDATSIVL
Sbjct: 139 LLKKIGLTQLNLNDYLALGAIFSATDSVCTLQVLNQDETPLLYSIVFGEGVVNDATSIVL 198

Query: 197 FNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREG 256
           FNA+QS D +N+    AL LLGTFLYL+FTST LGI++GLLSAY+IK LY  RHSTDRE 
Sbjct: 199 FNAVQSLDLSNLSSMTALALLGTFLYLFFTSTILGILVGLLSAYVIKKLYMGRHSTDREI 258

Query: 257 APMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAE 316
           A MMLMAYLS ++AEL+NLSGILT+FFCGI+MSHYTWHNVTESSRIT +HAFAT+SFI+E
Sbjct: 259 ALMMLMAYLSYMIAELMNLSGILTVFFCGIVMSHYTWHNVTESSRITAQHAFATMSFISE 318

Query: 317 TFIFLYVFMDALDIDKWKASN--ARNIFAVSSTM 348
           TFIFLYV MD LDIDKWK SN  A    AVSST+
Sbjct: 319 TFIFLYVGMDTLDIDKWKGSNSSAGTFLAVSSTL 352

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414888015|tpg|DAA64029.1| TPA: sodium/hydrogen exchanger [Zea mays]

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/326 (71%), Positives = 281/326 (86%)

Query: 9   QLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVV 68
           +L  L V +S  + ++++++++F  LLCACI++GHL+EENRW NESITAL++GLC G V+
Sbjct: 8   ELVRLGVLSSTSDHASVVSINLFVALLCACIVLGHLLEENRWVNESITALIIGLCTGVVI 67

Query: 69  LLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128
           LL +K +SSH+LVF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T+ LFG  GT+ISF+
Sbjct: 68  LLTTKGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFF 127

Query: 129 LISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVV 188
            IS+GA +IF +M + +L + DFLAIGAI SATDSVCTLQVL QDETPFLYS+VFGEGVV
Sbjct: 128 TISLGAIAIFSRMNIGTLDVGDFLAIGAIFSATDSVCTLQVLHQDETPFLYSLVFGEGVV 187

Query: 189 NDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFL 248
           NDATS+VLFNA+Q+FD N+ID  V LN LG F YL+ +ST LG+  GLLSAYIIK LY  
Sbjct: 188 NDATSVVLFNALQNFDLNHIDVAVVLNFLGNFCYLFVSSTLLGVFTGLLSAYIIKKLYIG 247

Query: 249 RHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAF 308
           RHSTDRE A MMLMAYLS +LAELL+LSGILT+FFCGI+MSHYTWHNVTESSR+TTKHAF
Sbjct: 248 RHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAF 307

Query: 309 ATISFIAETFIFLYVFMDALDIDKWK 334
           AT+SFIAETF+FLYV MDALDI+KW+
Sbjct: 308 ATLSFIAETFLFLYVGMDALDIEKWE 333

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333033744|dbj|BAK23261.1| Na+/H+ exchanger [Puccinellia tenuiflora]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/326 (71%), Positives = 281/326 (86%)

Query: 9   QLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVV 68
           QL+ L  + +  + ++++++++F  LLCACI++GHL+EENRW NESITAL++GLC G V+
Sbjct: 9   QLTRLGGALTTSDHASVVSINLFVALLCACIVLGHLLEENRWLNESITALIIGLCTGVVI 68

Query: 69  LLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128
           LL +K +SSH+LVF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T+ LFG  GT+ISF+
Sbjct: 69  LLTTKGKSSHVLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFF 128

Query: 129 LISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVV 188
            IS+ A +IF KM + +L + DFLAIGAI SATDSVCTLQVL+QDETPFLYS+VFGEGVV
Sbjct: 129 TISLAAIAIFSKMNIGTLDVSDFLAIGAIFSATDSVCTLQVLNQDETPFLYSLVFGEGVV 188

Query: 189 NDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFL 248
           NDATS+VLFNA+Q+FD N+ID  V L  LG FLYL+ +ST LG+  GLLSAYIIK LY  
Sbjct: 189 NDATSVVLFNALQNFDLNHIDTMVILKFLGNFLYLFVSSTFLGVFSGLLSAYIIKKLYIG 248

Query: 249 RHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAF 308
           RHSTDRE A MMLMAYLS +LAELL+LSGILT+FFCGI+MSHYTWHNVTESSRITTKHAF
Sbjct: 249 RHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAF 308

Query: 309 ATISFIAETFIFLYVFMDALDIDKWK 334
           AT+SFIAETF+FLYV MDALDI+KWK
Sbjct: 309 ATLSFIAETFLFLYVGMDALDIEKWK 334

Source: Puccinellia tenuiflora

Species: Puccinellia tenuiflora

Genus: Puccinellia

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242046844|ref|XP_002461168.1| hypothetical protein SORBIDRAFT_02g042190 [Sorghum bicolor] gi|241924545|gb|EER97689.1| hypothetical protein SORBIDRAFT_02g042190 [Sorghum bicolor]

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 232/326 (71%), Positives = 280/326 (85%)

Query: 9   QLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVV 68
           +L  L V +S  + S+++++++F  LLCACI++GHL+EENRW NESITAL++GLC G V+
Sbjct: 8   ELVRLGVLSSTSDHSSVVSINLFVALLCACIVLGHLLEENRWVNESITALIIGLCTGVVI 67

Query: 69  LLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY 128
           LL +K +SSH+LVF+ED FF+YLLPPIIFNAGFQVKKKQFF+NF T+ LFG  GT+ISF+
Sbjct: 68  LLTTKGKSSHILVFSEDFFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFF 127

Query: 129 LISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVV 188
            IS+GA +IF +M + +L + DFLAIGAI SATDSVCTLQVL QDETP LYS+VFGEGVV
Sbjct: 128 TISLGAIAIFSRMNIGTLDVGDFLAIGAIFSATDSVCTLQVLHQDETPLLYSLVFGEGVV 187

Query: 189 NDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFL 248
           NDATS+VLFNA+Q+FD N+ID TV LN LG F YL+ +ST LG+  GLLSAYIIK LY  
Sbjct: 188 NDATSVVLFNALQNFDLNHIDVTVVLNFLGNFCYLFLSSTLLGVFSGLLSAYIIKKLYIG 247

Query: 249 RHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAF 308
           RHSTDRE A MMLMAYLS +LAELL+LSGILT+FFCGI+MSHYTWHNVTESSR+TTKHAF
Sbjct: 248 RHSTDREVALMMLMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAF 307

Query: 309 ATISFIAETFIFLYVFMDALDIDKWK 334
           AT+SFIAETF+FLYV MDALDI+KW+
Sbjct: 308 ATLSFIAETFLFLYVGMDALDIEKWE 333

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357121559|ref|XP_003562486.1| PREDICTED: sodium/hydrogen exchanger 2-like [Brachypodium distachyon]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/314 (72%), Positives = 273/314 (86%)

Query: 21  NTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLL 80
           + ++++++++F  LLCACI++GHL+EENRW NESITAL++GLC G V+LL +K +SSH+L
Sbjct: 25  DHASVVSINLFVALLCACIVLGHLLEENRWVNESITALIIGLCTGVVILLTTKGKSSHVL 84

Query: 81  VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKK 140
           VF+EDLFF+YLLPPIIFNAGFQVKKKQFF+NF T+ LFG  GT+ISF+ IS+ A +IF K
Sbjct: 85  VFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTITLFGAVGTMISFFTISLAAIAIFSK 144

Query: 141 MGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAI 200
           M + +L + DFLAIGAI SATDSVCTLQVL+QDETPFLYS+VFGEGVVNDATS+VLFNA+
Sbjct: 145 MNIGTLDVGDFLAIGAIFSATDSVCTLQVLNQDETPFLYSLVFGEGVVNDATSVVLFNAL 204

Query: 201 QSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMM 260
           Q+FD N ID  V L  LG FLYL+ +ST LG+  GLLSAY+IK LY  RHSTDRE A MM
Sbjct: 205 QNFDLNQIDAMVVLKFLGNFLYLFVSSTFLGVFAGLLSAYVIKKLYIGRHSTDREVALMM 264

Query: 261 LMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIF 320
           LMAYLS +LAELL LSGILT+FFCGI+MSHYTWHNVTESSR+TTKHAFAT+SFIAETF+F
Sbjct: 265 LMAYLSYMLAELLELSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFIAETFLF 324

Query: 321 LYVFMDALDIDKWK 334
           LYV MDALDI+KWK
Sbjct: 325 LYVGMDALDIEKWK 338

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
TAIR|locus:2181246	538	NHX1 "Na+/H+ exchanger 1" [Ara	0.982	0.641	0.582	5.6e-100
TAIR|locus:2114810	546	NHX2 "sodium hydrogen exchange	0.974	0.626	0.575	1.5e-99
TAIR|locus:2081111	503	NHX4 "sodium hydrogen exchange	0.960	0.669	0.558	1.1e-94
TAIR|locus:2173972	529	NHX3 "AT5G55470" [Arabidopsis	0.891	0.591	0.552	2.2e-89
UNIPROTKB|Q5ZJ75	574	Q5ZJ75 "Sodium/hydrogen exchan	0.595	0.364	0.358	9.8e-34
UNIPROTKB|E2R7C3	581	SLC9A8 "Sodium/hydrogen exchan	0.595	0.359	0.358	1.1e-33
UNIPROTKB|F1MWW1	585	LOC617800 "Sodium/hydrogen exc	0.595	0.357	0.358	1.2e-33
RGD|1308193	575	Slc9a8 "solute carrier family	0.595	0.363	0.353	4.8e-33
UNIPROTKB|Q4L208	575	Slc9a8 "Sodium/hydrogen exchan	0.595	0.363	0.353	4.8e-33
MGI|MGI:1924281	576	Slc9a8 "solute carrier family	0.595	0.362	0.353	4.9e-33

TAIR|locus:2181246 NHX1 "Na+/H+ exchanger 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
 Identities = 202/347 (58%), Positives = 247/347 (71%)

Query:     7 LQQLSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITXXXXXXXXXX 66
             L  L +   S S  + ++++AL++F  LLCACI++GHL+EENRW NESIT          
Sbjct:     2 LDSLVSKLPSLSTSDHASVVALNLFVALLCACIVLGHLLEENRWMNESITALLIGLGTGV 61

Query:    67 XXXXXSKDRSSHLLVFNEDXXXXXXXXXXXXNAGXXXXXXXXXXXXTTMLLFGICGTVIS 126
                  SK +SSHLLVF+ED            NAG             T++LFG  GT+IS
Sbjct:    62 TILLISKGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMLFGAVGTIIS 121

Query:   127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEG 186
               +IS+G    FKK+ + +  + D+LAIGAI +ATDSVCTLQVL+QDETP LYS+VFGEG
Sbjct:   122 CTIISLGVTQFFKKLDIGTFDLGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEG 181

Query:   187 VVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLY 246
             VVNDATS+V+FNAIQSFD  +++   A +LLG FLYL+  ST LG   GL+SAY+IK LY
Sbjct:   182 VVNDATSVVVFNAIQSFDLTHLNHEAAFHLLGNFLYLFLLSTLLGAATGLISAYVIKKLY 241

Query:   247 FLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKH 306
             F RHSTDRE A MMLMAYLS +LAEL +LSGILT+FFCGI+MSHYTWHNVTESSRITTKH
Sbjct:   242 FGRHSTDREVALMMLMAYLSYMLAELFDLSGILTVFFCGIVMSHYTWHNVTESSRITTKH 301

Query:   307 AFATISFIAETFIFLYVFMDALDIDKWKA-SNARNI-FAVSSTMFSL 351
              FAT+SF+AETFIFLYV MDALDIDKW++ S+      AVSS +  L
Sbjct:   302 TFATLSFLAETFIFLYVGMDALDIDKWRSVSDTPGTSIAVSSILMGL 348

GO:0005576 "extracellular region" evidence=ISM

GO:0015081 "sodium ion transmembrane transporter activity" evidence=IGI;ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;IGI;ISS;IDA;TAS

GO:0035725 "sodium ion transmembrane transport" evidence=IGI;ISS;IDA;TAS

GO:0000325 "plant-type vacuole" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP;TAS

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0006814 "sodium ion transport" evidence=IGI;IC;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0055075 "potassium ion homeostasis" evidence=IGI

GO:0090333 "regulation of stomatal closure" evidence=IGI

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=IGI;RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2114810 NHX2 "sodium hydrogen exchanger 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 198/344 (57%), Positives = 245/344 (71%)

Query:    10 LSALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITXXXXXXXXXXXXX 69
             L++  +S S  + +++++L++F  LLCACI+IGHL+EENRW NESIT             
Sbjct:     7 LTSKMLSVSTSDHASVVSLNLFVALLCACIVIGHLLEENRWMNESITALLIGLGTGVVIL 66

Query:    70 XXSKDRSSHLLVFNEDXXXXXXXXXXXXNAGXXXXXXXXXXXXTTMLLFGICGTVISFYL 129
               S+ ++SHLLVF+ED            NAG             T++ FG  GTV+S  +
Sbjct:    67 LISRGKNSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFVTIMAFGAIGTVVSCTI 126

Query:   130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVN 189
             IS+GA   FKK+ + +  + DFLAIGAI +ATDSVCTLQVL+QDETP LYS+VFGEGVVN
Sbjct:   127 ISLGAIQFFKKLDIGTFDLGDFLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVN 186

Query:   190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLR 249
             DATS+VLFNAIQSFD  +++   A   LG F YL+  ST LG+  GL+SAY+IK LYF R
Sbjct:   187 DATSVVLFNAIQSFDLTHLNHEAAFQFLGNFFYLFLLSTGLGVATGLISAYVIKKLYFGR 246

Query:   250 HSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFA 309
             HSTDRE A MMLMAYLS +LAEL  LSGILT+FFCGI+MSHYTWHNVTESSRITTKHAFA
Sbjct:   247 HSTDREVALMMLMAYLSYMLAELFALSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFA 306

Query:   310 TISFIAETFIFLYVFMDALDIDKWK--ASNARNIFAVSSTMFSL 351
             T+SF+AETFIFLYV MDALDI+KW+  + +     AVSS +  L
Sbjct:   307 TLSFLAETFIFLYVGMDALDIEKWRFVSDSPGTSVAVSSILMGL 350

GO:0005576 "extracellular region" evidence=ISM

GO:0006814 "sodium ion transport" evidence=ISS;RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0010107 "potassium ion import" evidence=IDA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0055075 "potassium ion homeostasis" evidence=IGI

GO:0090333 "regulation of stomatal closure" evidence=IGI

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2081111 NHX4 "sodium hydrogen exchanger 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 191/342 (55%), Positives = 238/342 (69%)

Query:    14 KVSASFLNT-STIIALSVFFTLLCACIIIGHLIEENRWANESITXXXXXXXXXXXXXXXS 72
             K  A F +  ++++++++F  LLCACI++GHL+EE RW NESIT               S
Sbjct:    11 KTEALFASDHASVVSMNLFVALLCACIVLGHLLEETRWMNESITALIIGSCTGIVILLIS 70

Query:    73 KDRSSHLLVFNEDXXXXXXXXXXXXNAGXXXXXXXXXXXXTTMLLFGICGTVISFYLISV 132
               +SS +LVF+ED            NAG             T++LFG  GT+ISF +IS 
Sbjct:    71 GGKSSRILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFRNFMTIMLFGAIGTLISFVIISF 130

Query:   133 GAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDAT 192
             GA  +F+KM +  L I D+LAIGAI SATDSVCTLQVL+QDETP LYS+VFGEGVVNDAT
Sbjct:   131 GAKHLFEKMNIGDLTIADYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDAT 190

Query:   193 SIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHST 252
             S+VLFNAIQ FD  NI+  +AL   G F YL+  STALG+  GLLSA++IK LY  RHST
Sbjct:   191 SVVLFNAIQRFDLTNINSAIALEFAGNFFYLFILSTALGVAAGLLSAFVIKKLYIGRHST 250

Query:   253 DREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATIS 312
             DRE A MML+AYLS +LAEL +LS ILT+FFCGI+MSHYTWHNVT+ S++TTKH FA +S
Sbjct:   251 DREVALMMLLAYLSYMLAELFHLSSILTVFFCGIVMSHYTWHNVTDKSKVTTKHTFAAMS 310

Query:   313 FIAETFIFLYVFMDALDIDKW---KASNARNIFAVSSTMFSL 351
             F+AE FIFLYV MDALDI+KW   + S  ++I  VSS +  L
Sbjct:   311 FLAEIFIFLYVGMDALDIEKWDVVRNSPGQSI-GVSSILLGL 351

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2173972 NHX3 "AT5G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 173/313 (55%), Positives = 220/313 (70%)

Query:    25 IIALSVFFTLLCACIIIGHLIEENRWANESITXXXXXXXXXXXXXXXSKDRSSHLLVFNE 84
             +I +SVF  +LC C++IGHL+EENRW NESIT               SK +SSH+LVF+E
Sbjct:    20 VIPISVFIAILCLCLVIGHLLEENRWVNESITAILVGAASGTVILLISKGKSSHILVFDE 79

Query:    85 DXXXXXXXXXXXXNAGXXXXXXXXXXXXTTMLLFGICGTVISFYLISVGAFSIFKKMGMT 144
             +            NAG             T++ FG+ G  IS  +IS G + +F K+G  
Sbjct:    80 ELFFIYLLPPIIFNAGFQVKKKKFFHNFLTIMSFGVIGVFISTVIISFGTWWLFPKLGFK 139

Query:   145 SLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFD 204
              L  +D+LAIG I S+TD+VCTLQ+L QDETP LYS+VFGEGVVNDATS+VLFNA+Q   
Sbjct:   140 GLSARDYLAIGTIFSSTDTVCTLQILHQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIQ 199

Query:   205 FNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY 264
             F ++ G  AL + G FLYL+ TST LGI +GL++++++KTLYF RHST RE A M+LMAY
Sbjct:   200 FESLTGWTALQVFGNFLYLFSTSTLLGIGVGLITSFVLKTLYFGRHSTTRELAIMVLMAY 259

Query:   265 LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVF 324
             LS +LAEL +LSGILT+FFCG++MSHY  +NVTESSRIT++H FA +SFIAETFIFLYV 
Sbjct:   260 LSYMLAELFSLSGILTVFFCGVLMSHYASYNVTESSRITSRHVFAMLSFIAETFIFLYVG 319

Query:   325 MDALDIDKWKASN 337
              DALD  KWK S+
Sbjct:   320 TDALDFTKWKTSS 332

GO:0006814 "sodium ion transport" evidence=ISS;RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=ISS

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0055075 "potassium ion homeostasis" evidence=IMP

GO:0010351 "lithium ion transport" evidence=RCA

UNIPROTKB|Q5ZJ75 Q5ZJ75 "Sodium/hydrogen exchanger 8" [Gallus gallus (taxid:9031)]

 Score = 346 (126.9 bits), Expect = 9.8e-34, Sum P(2) = 9.8e-34
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ- 172
             ++ LF + GT IS +++  G + + +   +  L + D  A G+++SA D V T+ + +  
Sbjct:   146 SITLFSVFGTAISAFIVGGGIYFLGQADVIYKLNMTDSFAFGSLISAVDPVATIAIFNAL 205

Query:   173 DETPFLYSIVFGEGVVNDATSIVLFNAIQSF---DFNNIDG-TVALNLLGTFLYLYFTST 228
             +  P L  +VFGE ++NDA SIVL N  +     + +++ G    L  LG FL ++F S 
Sbjct:   206 NVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRENMSDVSGWQTFLQALGYFLKMFFGSA 265

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   266 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 324

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   325 SHYTHHNLSPVTQILMQQTLRTVAFMCETCVFAFL 359

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|E2R7C3 SLC9A8 "Sodium/hydrogen exchanger" [Canis lupus familiaris (taxid:9615)]

 Score = 347 (127.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD 173
             ++ LF + GT IS +++  G + + +   ++ L + D  A G+++SA D V T+ + +  
Sbjct:   153 SITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNAL 212

Query:   174 ET-PFLYSIVFGEGVVNDATSIVLFNAIQSF---DFNNIDG-TVALNLLGTFLYLYFTST 228
                P L  +VFGE ++NDA SIVL N  +     + +++ G    L  LG FL ++F S 
Sbjct:   213 HVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSA 272

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   273 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 331

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   332 SHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFL 366

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MWW1 LOC617800 "Sodium/hydrogen exchanger" [Bos taurus (taxid:9913)]

 Score = 347 (127.2 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
 Identities = 77/215 (35%), Positives = 128/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD 173
             ++ LF + GT IS +++  G + + +   ++ L + D  A G+++SA D V T+ + +  
Sbjct:   156 SITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNAL 215

Query:   174 ET-PFLYSIVFGEGVVNDATSIVLFNAIQSF---DFNNIDG-TVALNLLGTFLYLYFTST 228
                P L  +VFGE ++NDA SIVL N  +     + +++ G    L  LG FL ++F S 
Sbjct:   216 HVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKNMSDVSGWQTFLQALGYFLKMFFGSA 275

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   276 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 334

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   335 SHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFL 369

GO:0051453 "regulation of intracellular pH" evidence=IEA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1308193 Slc9a8 "solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 4.8e-33, Sum P(2) = 4.8e-33
 Identities = 76/215 (35%), Positives = 127/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD 173
             ++ LF + GT IS +++  G + + +   ++ L + D  A G+++SA D V T+ + +  
Sbjct:   147 SITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNAL 206

Query:   174 ET-PFLYSIVFGEGVVNDATSIVLFNAIQSFD---FNNIDGTVALN-LLGTFLYLYFTST 228
                P L  +VFGE ++NDA SIVL N  +       +++ G    +  LG FL ++F S 
Sbjct:   207 HVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSA 266

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   267 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 325

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   326 SHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFL 360

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006813 "potassium ion transport" evidence=ISO

GO:0006814 "sodium ion transport" evidence=ISO

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISO

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IEA;ISO

GO:0015992 "proton transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0051453 "regulation of intracellular pH" evidence=IEA;ISO

UNIPROTKB|Q4L208 Slc9a8 "Sodium/hydrogen exchanger 8" [Rattus norvegicus (taxid:10116)]

 Score = 341 (125.1 bits), Expect = 4.8e-33, Sum P(2) = 4.8e-33
 Identities = 76/215 (35%), Positives = 127/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD 173
             ++ LF + GT IS +++  G + + +   ++ L + D  A G+++SA D V T+ + +  
Sbjct:   147 SITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNAL 206

Query:   174 ET-PFLYSIVFGEGVVNDATSIVLFNAIQSFD---FNNIDGTVALN-LLGTFLYLYFTST 228
                P L  +VFGE ++NDA SIVL N  +       +++ G    +  LG FL ++F S 
Sbjct:   207 HVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSA 266

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   267 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 325

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   326 SHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFL 360

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1924281 Slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Mus musculus (taxid:10090)]

 Score = 341 (125.1 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 76/215 (35%), Positives = 127/215 (59%)

Query:   114 TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD 173
             ++ LF + GT IS +++  G + + +   ++ L + D  A G+++SA D V T+ + +  
Sbjct:   148 SITLFAVFGTAISAFVVGGGIYFLGQADVISKLNMTDSFAFGSLISAVDPVATIAIFNAL 207

Query:   174 ET-PFLYSIVFGEGVVNDATSIVLFNAIQSFD---FNNIDGTVALN-LLGTFLYLYFTST 228
                P L  +VFGE ++NDA SIVL N  +       +++ G    +  LG FL ++F S 
Sbjct:   208 HVDPVLNMLVFGESILNDAVSIVLTNTAEGLTRKHMSDVSGWQTFSQALGYFLKMFFGSA 267

Query:   229 ALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIM 288
             ALG + GL+SA ++K +  LR +   E   M++ AYL   LAE ++LSGI+ I F GI+M
Sbjct:   268 ALGTLTGLISALVLKHID-LRKTPSLEFGMMIIFAYLPYGLAEGISLSGIMAILFSGIVM 326

Query:   289 SHYTWHNVTESSRITTKHAFATISFIAETFIFLYV 323
             SHYT HN++  ++I  +    T++F+ ET +F ++
Sbjct:   327 SHYTHHNLSPVTQILMQQTLRTVAFLCETCVFAFL 361

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IDA

GO:0015386 "potassium:hydrogen antiporter activity" evidence=IDA

GO:0015992 "proton transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IDA

GO:0051453 "regulation of intracellular pH" evidence=IDA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56XP4	NHX2_ARATH	No assigned EC number	0.6656	0.9743	0.6263	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022880001 RecName- Full=Sodium/hydrogen exchanger; (541 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	351
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	5e-47
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	6e-23
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	4e-19
TIGR00831	525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	9e-17
COG3263	574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	4e-04

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score =  166 bits (423), Expect = 5e-47
 Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 13/308 (4%)

Query: 22  TSTIIALSVFFTLLCACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLL 80
             +     ++  L     I  HL  +  R   ES+  ++ GL  GG++  +         
Sbjct: 5   VQSPYEFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDP---P 61

Query: 81  VFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKK 140
             +   FFLYLLPPI+ +AG+ + ++ FF+N  ++L+F + GT+I+ ++I +  + I   
Sbjct: 62  TLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLI 121

Query: 141 MGMTSLRIQ--DFLAIGAILSATDSVCTLQVLSQ-DETPFLYSIVFGEGVVNDATSIVLF 197
            G  S+ I   D L  G+++SA D V  L V  +      LY I+FGE ++NDA ++VL+
Sbjct: 122 GGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIIIFGESLLNDAVTVVLY 181

Query: 198 NAIQSFDFNNIDGTVALNLLGTFLYLY---FTSTALGIVLGLLSAYIIKTLYFLRHSTDR 254
           N    F     +    +++       +        +G+V G L A+I +   F  H    
Sbjct: 182 NTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITR---FTHHIRQI 238

Query: 255 EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFI 314
           E   + L++YLS + AE L+LSGIL + FCGI M  Y   N++  S+ T K+    +S +
Sbjct: 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSL 298

Query: 315 AETFIFLY 322
           +ET IF++
Sbjct: 299 SETLIFIF 306

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score = 98.5 bits (246), Expect = 6e-23
 Identities = 64/275 (23%), Positives = 120/275 (43%), Gaps = 15/275 (5%)

Query: 53  ESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF 112
           E    LLLGL  G   L       S  L  + +LF +  L  ++F  G ++  ++  + +
Sbjct: 32  EIPLLLLLGLLGGPPGLNLI----SPDLELDPELFLVLFLAILLFAGGLELDLRELRRVW 87

Query: 113 TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ 172
            ++L+  +   +I+   I + A  +   + +          +GAILS TD V    +  +
Sbjct: 88  RSILVLALPLVLITALGIGLLAHWLLPGIPLA-----AAFLLGAILSPTDPVAVSPIFKR 142

Query: 173 DETPF-LYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALG 231
              P  + +I+ GE ++ND   IVLF    +        ++    L  FL        LG
Sbjct: 143 VRVPKRIRTILEGESLLNDGVGIVLFKVALAALLGTGAFSLG-WALLLFLIEALGGILLG 201

Query: 232 IVLGLLSAYIIKTLYFLRHSTDR--EGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMS 289
           ++LG L   +++ L   R  T    E    +L+A+ + +LAE L +SGIL +   G+++ 
Sbjct: 202 LLLGYLLGRLLRRLDR-RGWTSPLLETLLTLLLAFAAYLLAEALGVSGILAVVVAGLVLG 260

Query: 290 HYT-WHNVTESSRITTKHAFATISFIAETFIFLYV 323
                +    S+R+     +  + F+    +F+ +
Sbjct: 261 EAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLL 295

Length = 429

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 17/241 (7%)

Query: 85  DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMT 144
           ++     LP ++F AG ++  ++  KN  ++LL  + G +I F L  + A      + + 
Sbjct: 48  EVLAELGLPLLLFLAGLELDLRELRKNGKSILLLALLGVLIPFLLGLLLALLGGLGIPLL 107

Query: 145 SLRIQDFLAIGAILSATDSVCTLQVL--SQDETPFLYSIVFGEGVVNDATSIVLFNAIQS 202
                + L  GA LSAT  V  L +L         L +++ GE V+NDA ++VL   + +
Sbjct: 108 -----EALLFGAALSATSPVVVLAILKERGRLNTRLGTLILGESVLNDAVAVVLLAVLLA 162

Query: 203 FDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLM 262
                   +    LL  FL +      LG+V G L   I +   F     + E   ++ +
Sbjct: 163 L-AGVGGLSDLGLLLLIFLVVALGGLLLGLVFGWLLRLITR---FTSGDRELEVLLVLAL 218

Query: 263 AYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLY 322
           A L+ +LAELL LSGIL  F  G+++S+Y       ++ ++ K        +     F+ 
Sbjct: 219 ALLAALLAELLGLSGILGAFLAGLVLSNY-----AFANELSEK-LEPFGYGLFLPLFFVS 272

Query: 323 V 323
           V
Sbjct: 273 V 273

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form

 Score = 80.7 bits (199), Expect = 9e-17
 Identities = 61/250 (24%), Positives = 107/250 (42%), Gaps = 24/250 (9%)

Query: 82  FNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKM 141
            + ++     LPP++F A      ++  +NF  + L      V++  ++    FS+   +
Sbjct: 46  LDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVVVG---FSLNWIL 102

Query: 142 GMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETPFLYSIVF-GEGVVNDATSIVLFNAI 200
           G+        L +GA+LS TD+V  L        P   SI+  GE ++ND  ++V+F AI
Sbjct: 103 GIPLALA---LILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF-AI 158

Query: 201 QSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDR---EGA 257
                        LN    F  +     A G+ +G L+  +      LR   D    E A
Sbjct: 159 AVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRL------LRAKIDDPLVEIA 212

Query: 258 PMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTK---HAF-ATISF 313
             +L  +   +LAE  + SG++ +   G+I+++Y       S   TT+     F + I F
Sbjct: 213 LTILAPFAGFLLAERFHFSGVIAVVAAGLILTNY---GRDFSMSPTTRLIALDFWSVIVF 269

Query: 314 IAETFIFLYV 323
           +    IF+ +
Sbjct: 270 LVNGIIFILI 279

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 525

>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 26/233 (11%)

Query: 95  IIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAI 154
           I+F+ GF  +   F       L     G +I+  L  V A  +     +  L       I
Sbjct: 71  ILFDGGFGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGL------LI 124

Query: 155 GAILSATDSVCTLQVLS----QDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDG 210
           GAI+ +TD+     +L      +       I   E   ND  ++ L     +     +  
Sbjct: 125 GAIVGSTDAAAVFSLLGGKNLNERVASTLEI---ESGSNDPMAVFL-----TITLIELIA 176

Query: 211 TVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY--LSCI 268
               NL   FL  +     LG++LGL    ++  L   R + D    P++ +A   L   
Sbjct: 177 GGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQL-INRINLDSGLYPILALAGGLLIFS 235

Query: 269 LAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFL 321
           L   +  SGIL ++  G+++      N    +R      F  ++++A+  +FL
Sbjct: 236 LTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFL 283

Length = 574

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	100.0
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	100.0
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	100.0
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	100.0
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	100.0
PRK05326	562	potassium/proton antiporter; Reviewed	100.0
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	100.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	99.97
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	99.97
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	99.95
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	99.94
PRK03562	621	glutathione-regulated potassium-efflux system prot	99.94
PRK03659	601	glutathione-regulated potassium-efflux system prot	99.93
PLN03159	832	cation/H(+) antiporter 15; Provisional	99.93
PRK10669	558	putative cation:proton antiport protein; Provision	99.91
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	99.61
KOG1650	769	consensus Predicted K+/H+-antiporter [Inorganic io	99.31
PRK14853	423	nhaA pH-dependent sodium/proton antiporter; Provis	98.77
TIGR00773	373	NhaA Na+/H+ antiporter NhaA. These proteins are me	97.98
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	97.02
PF06965	378	Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP	96.6
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	96.27
PRK09560	389	nhaA pH-dependent sodium/proton antiporter; Review	96.06
PRK09561	388	nhaA pH-dependent sodium/proton antiporter; Review	95.66
PRK14855	423	nhaA pH-dependent sodium/proton antiporter; Provis	95.58
PRK14854	383	nhaA pH-dependent sodium/proton antiporter; Provis	95.48
COG0385	319	Predicted Na+-dependent transporter [General funct	95.29
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	95.27
COG2855	334	Predicted membrane protein [Function unknown]	95.18
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	95.04
PRK14856	438	nhaA pH-dependent sodium/proton antiporter; Provis	94.82
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.76
PF05684	378	DUF819: Protein of unknown function (DUF819); Inte	94.69
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	94.62
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.5
PF03956	191	DUF340: Membrane protein of unknown function (DUF3	93.78
TIGR00808	254	malonate_madM malonate transporter, MadM subunit.	93.74
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	93.67
PRK10669	558	putative cation:proton antiport protein; Provision	93.03
COG2431	297	Predicted membrane protein [Function unknown]	92.69
PLN03159	832	cation/H(+) antiporter 15; Provisional	92.44
TIGR00841	286	bass bile acid transporter. Functionally character	91.37
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	91.06
COG3493	438	CitS Na+/citrate symporter [Energy production and	90.78
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	90.61
COG3004	390	NhaA Na+/H+ antiporter [Inorganic ion transport an	90.35
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	90.3
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	90.18
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	90.16
PF03616	368	Glt_symporter: Sodium/glutamate symporter; InterPr	90.05
KOG3826	252	consensus Na+/H+ antiporter [Inorganic ion transpo	89.84
PF03390	414	2HCT: 2-hydroxycarboxylate transporter family; Int	88.73
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	88.63
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	88.22
COG0786	404	GltS Na+/glutamate symporter [Amino acid transport	87.85
PF05982	327	DUF897: Domain of unknown function (DUF897) ; Inte	87.58
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	87.56
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	86.87
TIGR00698	335	conserved hypothetical integral membrane protein.	86.73
TIGR00210	398	gltS sodium--glutamate symport carrier (gltS).	86.67
PRK03818	552	putative transporter; Validated	85.57
TIGR03802	562	Asp_Ala_antiprt aspartate-alanine antiporter. All	84.99
TIGR00783	347	ccs citrate carrier protein, CCS family. These pro	84.86
TIGR00698	335	conserved hypothetical integral membrane protein.	84.63
PRK04288	232	antiholin-like protein LrgB; Provisional	84.24
PRK04972	558	putative transporter; Provisional	82.95
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	82.28
PRK04972	558	putative transporter; Provisional	81.56
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	80.56
TIGR01625	154	YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplicati	80.14

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-50  Score=389.63  Aligned_cols=320  Identities=49%  Similarity=0.834  Sum_probs=291.9

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHhhcC--ccchHHHHHHHHHHHHHHHHhhccCCCc---cccccChhHHHHhh
Q 043481           17 ASFLNTSTIIALSVFFTLLCACIIIGHLIEENR--WANESITALLLGLCAGGVVLLASKDRSS---HLLVFNEDLFFLYL   91 (351)
Q Consensus        17 ~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~--~iP~~~~~ll~GillG~~~~~~~~~~~~---~~~~~~~~~~~~i~   91 (351)
                      ++++|+++...+..++.+++.+++++|+++++|  ++|+.+..+++|+++|.+..+..+....   .+..++||.+..+.
T Consensus        26 ~~~~e~~~~~al~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vL  105 (575)
T KOG1965|consen   26 ASEQEHASSVALLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVL  105 (575)
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHh
Confidence            456788888899999999999999999998755  7999999999999999988877665555   56789999999999


Q ss_pred             hHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhc
Q 043481           92 LPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLS  171 (351)
Q Consensus        92 L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~  171 (351)
                      +|+|+|++|++++.+.++||..++..++++|+.+++.+++..+|++.......+++|.+++.+|+++|||||+.++++++
T Consensus       106 LPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfn  185 (575)
T KOG1965|consen  106 LPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFN  185 (575)
T ss_pred             hchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHH
Confidence            99999999999999999999999999999999999999999998874433334899999999999999999999999999


Q ss_pred             cCCC-cchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043481          172 QDET-PFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRH  250 (351)
Q Consensus       172 ~~~~-~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~  250 (351)
                      |.++ |++..+++|||++||++++++++.+......+.+.....+.++.++..++++..+|++.|.+.++++|+.+. ||
T Consensus       186 el~vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l-~~  264 (575)
T KOG1965|consen  186 ELGVDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYL-RR  264 (575)
T ss_pred             HhCCCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence            9997 589999999999999999999999998876544443444789999999999999999999999999999976 47


Q ss_pred             CCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481          251 STDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI  330 (351)
Q Consensus       251 ~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~  330 (351)
                      .+..|..+.+.++|.+|++||.+|+||++++++||++++.|.++|.+++++...+++|+.+++++|+++|.|+|+.+.+.
T Consensus       265 ~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~  344 (575)
T KOG1965|consen  265 TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF  344 (575)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             ccchhhH
Q 043481          331 DKWKASN  337 (351)
Q Consensus       331 ~~~~~~~  337 (351)
                      ++|.+..
T Consensus       345 ~k~~~~~  351 (575)
T KOG1965|consen  345 QKHVYKS  351 (575)
T ss_pred             cceeeec
Confidence            8887773

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=100.00  E-value=1.5e-44  Score=362.01  Aligned_cols=303  Identities=30%  Similarity=0.543  Sum_probs=256.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCH
Q 043481           27 ALSVFFTLLCACIIIGHLIEENR-WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKK  105 (351)
Q Consensus        27 ~l~i~~~ll~~~~~~~~~l~~~~-~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~  105 (351)
                      ...+++.+...+.+..++..|+. ++|+++.++++|+++|+........   +..+++|+++..++||+|+|++|+++|+
T Consensus        10 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~---~~~~l~~~lf~~~~LPpIlFe~g~~l~~   86 (559)
T TIGR00840        10 EFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHI---DPPTLDSSYFFLYLLPPIVLDAGYFMPQ   86 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCC---ccCCcCHHHHHHHHHHHHHHHHHhcCCH
Confidence            34555566666777778776644 6999999999999999976543322   2356789999999999999999999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhh
Q 043481          106 KQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGM--TSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIV  182 (351)
Q Consensus       106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~--~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll  182 (351)
                      +++||++++++.+|++|++++++++|..+|++.+..+.  .++||..|+++||++|||||+++.+++|+.+.| |+.+++
T Consensus        87 ~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v~~~L~~ll  166 (559)
T TIGR00840        87 RNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHVNEKLYIII  166 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCCCcchhhhe
Confidence            99999999999999999999999999999977653332  267999999999999999999999999999987 799999


Q ss_pred             hhhhhhhhHHHHHHHHHHHhhhcc---CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHH
Q 043481          183 FGEGVVNDATSIVLFNAIQSFDFN---NIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPM  259 (351)
Q Consensus       183 ~ges~~nD~~~iil~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~  259 (351)
                      +|||++||++++++|..+..+...   +.+..++......++...++|+++|+++|++..++.|+..   +.+..+..++
T Consensus       167 ~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~---~~~~~e~~l~  243 (559)
T TIGR00840       167 FGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTH---HIRQIEPLFV  243 (559)
T ss_pred             ehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHH
Confidence            999999999999999988877542   2233344445566677778899999999999999998763   3346788999


Q ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc-ccchh
Q 043481          260 MLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI-DKWKA  335 (351)
Q Consensus       260 l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~-~~~~~  335 (351)
                      +.++|++|++||.+|.||++|+++||++++++.+++.++++++..+++|+.+++++|+++|+++|+++... ..|++
T Consensus       244 l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~  320 (559)
T TIGR00840       244 FLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNW  320 (559)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            99999999999999999999999999999998888888999999999999999999999999999987544 34554

This model is specific for the eukaryotic members members of this family.

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=100.00  E-value=7.1e-41  Score=335.30  Aligned_cols=274  Identities=21%  Similarity=0.348  Sum_probs=235.7

Q ss_pred             HHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHH
Q 043481           39 IIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLF  118 (351)
Q Consensus        39 ~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~l  118 (351)
                      ......+.|+.++|+++++++.|+++||.....       ..++||+.+..+++|+++|++|+++|++++||+++++..+
T Consensus        10 ~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~-------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~l   82 (525)
T TIGR00831        10 ATAVAVTVKFIRLPYPIALILAGLLLGLAGLLP-------EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALI   82 (525)
T ss_pred             HHHHHHHhcccCCCHHHHHHHHHHHHHhccccC-------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            333455566678999999999999999864321       1346788899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhhhHHHHHHH
Q 043481          119 GICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVNDATSIVLF  197 (351)
Q Consensus       119 a~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~nD~~~iil~  197 (351)
                      ++++++++++.++..+|++.      ++||..|+++|++++||||+++.+++|+.+.| |+.++++|||++||++++++|
T Consensus        83 a~~~vlit~~~v~~~~~~~~------~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~alvlf  156 (525)
T TIGR00831        83 AFLLVVVTTVVVGFSLNWIL------GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGAALVVF  156 (525)
T ss_pred             HHHHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchHHHHHH
Confidence            99999999999998888754      88999999999999999999999999999988 799999999999999999999


Q ss_pred             HHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcch
Q 043481          198 NAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSG  277 (351)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sg  277 (351)
                      .+...+..++. ..+.......+++...+|+++|+++|++..++.|+.   .+++..+..+++..+|.+|++||.+|.||
T Consensus       157 ~~~~~~~~~~~-~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~---~~~~~~~~~l~l~~~~~~y~lAe~lg~Sg  232 (525)
T TIGR00831       157 AIAVAVALGKG-VFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAK---IDDPLVEIALTILAPFAGFLLAERFHFSG  232 (525)
T ss_pred             HHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            98887764311 122334566778888889999999998888877543   34455678899999999999999999999


Q ss_pred             HHHHHHHHHHhhhcccc-CCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481          278 ILTIFFCGIIMSHYTWH-NVTESSRITTKHAFATISFIAETFIFLYVFMDALD  329 (351)
Q Consensus       278 ila~~v~Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~  329 (351)
                      ++|++++|++++|+.++ +.+++.+...+++|+.+++++|+++|+++|++++.
T Consensus       233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~  285 (525)
T TIGR00831       233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG  285 (525)
T ss_pred             HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998766 67788888899999999999999999999999865

This model is specific for the bacterial members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-40  Score=323.15  Aligned_cols=307  Identities=21%  Similarity=0.296  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHH
Q 043481           31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFK  110 (351)
Q Consensus        31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~  110 (351)
                      ...++......+.+.+| .++|+...+++.|++.|+........    ..+.++|.+..+++|+++|++|+|+|++++||
T Consensus        11 ~~lil~l~~~~~~~~~~-l~~~~i~~~ll~g~i~g~~~l~~~~~----~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~   85 (429)
T COG0025          11 LLLILLLGLLVSVLAGR-LLLPEIPLLLLLGLLGGPPGLNLISP----DLELDPELFLVLFLAILLFAGGLELDLRELRR   85 (429)
T ss_pred             HHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhhhhhccccc----cccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence            33434444444444444 56899999999999999865433221    23557888899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhh
Q 043481          111 NFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVN  189 (351)
Q Consensus       111 ~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~n  189 (351)
                      +++++..++++++++++...+...|++++     ++|+..|+++||+++||||+++.+++|+.+.| |++++++|||++|
T Consensus        86 ~~~~I~~La~~~v~it~~~~g~~~~~l~~-----~i~~~~a~l~gAilspTDPv~v~~i~~~~~vp~ri~~iL~gESl~N  160 (429)
T COG0025          86 VWRSILVLALPLVLITALGIGLLAHWLLP-----GIPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLN  160 (429)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHhHHhcCCCchhhHHHHhcCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999864     78999999999999999999999999999988 7999999999999


Q ss_pred             hHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcchHHHHHHHHHHHH
Q 043481          190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRH-STDREGAPMMLMAYLSCI  268 (351)
Q Consensus       190 D~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~-~~~~~~~l~l~~~~~~~~  268 (351)
                      |++++++|.+......++.+. +..+....+++...+|+++|.+.|++..++.|++.+++. ++..+..+++..++.+|.
T Consensus       161 D~~giv~f~~~l~~~~~~~~~-~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~  239 (429)
T COG0025         161 DGVGIVLFKVALAALLGTGAF-SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYL  239 (429)
T ss_pred             hHHHHHHHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence            999999999988876543221 144578889999999999999999999999999864321 245578999999999999


Q ss_pred             HHHhcCcchHHHHHHHHHHhhhccccCCCh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHH
Q 043481          269 LAELLNLSGILTIFFCGIIMSHYTWHNVTE-SSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSST  347 (351)
Q Consensus       269 ~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      .||.+|.||++|++++|++.+++.+.+.++ +.|.+.+++||.+++++|.++|+++|.+++....+...+.+++++...+
T Consensus       240 ~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~  319 (429)
T COG0025         240 LAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAV  319 (429)
T ss_pred             HHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999997333333333 5578889999999999999999999999977655555455555554444


Q ss_pred             H
Q 043481          348 M  348 (351)
Q Consensus       348 ~  348 (351)
                      +
T Consensus       320 ~  320 (429)
T COG0025         320 L  320 (429)
T ss_pred             H
Confidence            3

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=100.00  E-value=3.6e-38  Score=318.76  Aligned_cols=304  Identities=16%  Similarity=0.181  Sum_probs=239.6

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHh-hccCCCccccccChhHHHHhhhH
Q 043481           15 VSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLL-ASKDRSSHLLVFNEDLFFLYLLP   93 (351)
Q Consensus        15 ~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~-~~~~~~~~~~~~~~~~~~~i~L~   93 (351)
                      |+.-+....+.. +.++...+++..+++.+++++.++|+++.++++|+++||.... +++....+.-.+..+ +.++.++
T Consensus         3 w~~l~~~~~~l~-~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~le-IteIvL~   80 (810)
T TIGR00844         3 WEQLEVTKAHVA-YSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLE-ISRILLC   80 (810)
T ss_pred             cccccccchhhH-HHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHH-HHHHHHH
Confidence            555556666654 4444555666777799999888999999999999999997653 332211100011112 7789999


Q ss_pred             HHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhcc-
Q 043481           94 PIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ-  172 (351)
Q Consensus        94 ~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~-  172 (351)
                      +++|.+|+++|++++||+|+.+..++++++.++++++++++|++++     +++|..|+++||+++||||+.+.++++. 
T Consensus        81 I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~-----GL~~~~ALLLGAILAPTDPVLAssV~kg~  155 (810)
T TIGR00844        81 LQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVP-----GLNFPASLLMGACITATDPVLAQSVVSGT  155 (810)
T ss_pred             HHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHHhhhcCCcHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999998753     8899999999999999999999999983 


Q ss_pred             --CCCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhcc-C-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          173 --DETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFN-N-IDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYF  247 (351)
Q Consensus       173 --~~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~  247 (351)
                        .+.| |+++++++||++||+++++++.+.+.+... + .......+.+..+++.+++|+++|+++|++.+++.++..+
T Consensus       156 ~~~rvP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~r  235 (810)
T TIGR00844       156 FAQKVPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEG  235 (810)
T ss_pred             ccccCChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              4566 799999999999999999988876655432 1 1111112346788999999999999999999999998853


Q ss_pred             hcc-CCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 043481          248 LRH-STDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMD  326 (351)
Q Consensus       248 ~~~-~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~  326 (351)
                      ++. .++....+.+.+++++|..++.+|+||++|+|+||++++|..+.  .+  +.+...+|+.++.+++..+|+++|+.
T Consensus       236 r~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~--~~--~~~~~~f~e~ie~LLn~~lFVlLGa~  311 (810)
T TIGR00844       236 KNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWF--AQ--KTHESNVSNVIDVLLNYAYFVYLGSI  311 (810)
T ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccch--hh--hHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            222 22344566788899999999999999999999999999986542  11  22345699999999999999999999


Q ss_pred             ccc
Q 043481          327 ALD  329 (351)
Q Consensus       327 ~~~  329 (351)
                      +++
T Consensus       312 L~~  314 (810)
T TIGR00844       312 LPW  314 (810)
T ss_pred             hCH
Confidence            864

This model is specific for the fungal members of this family.

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=314.27  Aligned_cols=318  Identities=31%  Similarity=0.546  Sum_probs=266.9

Q ss_pred             hccccccccccchhHHHHHHHHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHh
Q 043481           12 ALKVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENR-WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLY   90 (351)
Q Consensus        12 ~~~~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~-~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i   90 (351)
                      ++-|++.....+....+  ++.+...+.+..|+..+.+ .+|+++.++++|+++|.+........   ...++++.++.+
T Consensus        30 ~~~~~w~~V~~p~vi~l--wil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~---~~~L~s~vFFly  104 (670)
T KOG1966|consen   30 VVTWDWEHVHIPYVITL--WILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIA---PFFLESDVFFLY  104 (670)
T ss_pred             ceEEehhhccCchhhHH--HHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccc---cccccccchhhh
Confidence            34455555555554444  4445555777788886644 48999999999999999876554332   245678999999


Q ss_pred             hhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCCHHHHHHhhhhcccccHHHHHH
Q 043481           91 LLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFK--KMGMTSLRIQDFLAIGAILSATDSVCTLQ  168 (351)
Q Consensus        91 ~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~--~~g~~~~~~~~alllGailsaTdp~~v~~  168 (351)
                      .||+|++++|+-++.|.|..|..+++.+|++|++..++..|..+|.+..  .+|. ..++.+-+++|+++|+.||++|++
T Consensus       105 LLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~-~~glld~LlFgSLIsAVDPVAVLa  183 (670)
T KOG1966|consen  105 LLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGM-SIGLLDILLFGSLISAVDPVAVLA  183 (670)
T ss_pred             hcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CchHHHHHHHHHHHHhcCchhhhh
Confidence            9999999999999999999999999999999999999999888776543  2332 267999999999999999999999


Q ss_pred             HhccCCCcc-hhHhhhhhhhhhhHHHHHHHHHHHhhhc---cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          169 VLSQDETPF-LYSIVFGEGVVNDATSIVLFNAIQSFDF---NNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT  244 (351)
Q Consensus       169 il~~~~~~~-l~~ll~ges~~nD~~~iil~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~  244 (351)
                      +++|.++.+ +..++.|||++||++.+++|+.+.++..   ++..+.+......+|+...+||+++|+++|++.+..+|.
T Consensus       184 VFEEihVNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkf  263 (670)
T KOG1966|consen  184 VFEEIHVNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKF  263 (670)
T ss_pred             hhhhhccccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHh
Confidence            999999875 8999999999999999999998887753   244444444556777788899999999999999999997


Q ss_pred             HHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043481          245 LYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVF  324 (351)
Q Consensus       245 ~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG  324 (351)
                      .   ++.+..|+.+.+.++|++|+.||.+|+||++|..+||+.+++|.+.|++++++..++.+.+++++..|+++|+++|
T Consensus       264 t---~~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLG  340 (670)
T KOG1966|consen  264 T---KHVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLG  340 (670)
T ss_pred             h---cceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeeh
Confidence            7   5677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccc-cchhhHH
Q 043481          325 MDALDID-KWKASNA  338 (351)
Q Consensus       325 ~~~~~~~-~~~~~~~  338 (351)
                      .+..+.. .|++..+
T Consensus       341 vs~v~~~h~wd~~Fi  355 (670)
T KOG1966|consen  341 VSTVSSNHHWDFAFI  355 (670)
T ss_pred             hhhcCCcceeehhhh
Confidence            9987653 4555433

>PRK05326 potassium/proton antiporter; Reviewed

Probab=100.00  E-value=1.1e-35  Score=301.25  Aligned_cols=290  Identities=18%  Similarity=0.171  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481           32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN  111 (351)
Q Consensus        32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~  111 (351)
                      ..+++.+.+.+.+.+| .++|.+++++++|+++||......+..+.   + ..+.+.++++++++|++|+|+|++.+||+
T Consensus        12 ~~ll~l~~~~~~l~~r-~~~P~ll~~il~GillGp~~lg~i~~~~~---~-~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~   86 (562)
T PRK05326         12 ALLLLLSILASRLSSR-LGIPSLLLFLAIGMLAGEDGLGGIQFDNY---P-LAYLVGNLALAVILFDGGLRTRWSSFRPA   86 (562)
T ss_pred             HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhCccccCCcccCcH---H-HHHHHHHHHHHHHHHcCccCCCHHHHHHH
Confidence            3444445555555444 67999999999999999976542211111   1 12568899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC--Cc-chhHhhhhhhhh
Q 043481          112 FTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE--TP-FLYSIVFGEGVV  188 (351)
Q Consensus       112 ~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~--~~-~l~~ll~ges~~  188 (351)
                      +++++.+++.++++++..++..+++++      +++|..|+++|+++++|||+++.++++|.+  .+ |+++++++||++
T Consensus        87 ~~~~~~la~~gv~~t~~~~g~~~~~l~------g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~  160 (562)
T PRK05326         87 LGPALSLATLGVLITAGLTGLFAHWLL------GLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGS  160 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhc
Confidence            999999999999999988888888876      889999999999999999999999999988  66 799999999999


Q ss_pred             hhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHH
Q 043481          189 NDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCI  268 (351)
Q Consensus       189 nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~  268 (351)
                      ||+.+++++.+...+..++.+..++ ..+..++.++.+++++|+++|+...++.++.+  ++.+..+..+.++.++++|+
T Consensus       161 nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~--~~~~~~~~i~~l~~~l~~~~  237 (562)
T PRK05326        161 NDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRIA--LPAEGLYPILVLAGALLIFA  237 (562)
T ss_pred             ccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHHHH
Confidence            9999999999887765433221122 23556777888888888888888888887652  12234567788999999999


Q ss_pred             HHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHH
Q 043481          269 LAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARN  340 (351)
Q Consensus       269 ~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~  340 (351)
                      +||.+|.||++|++++|++++|.+.     +.+++.+++++.+++++++++|+++|+.+......+..+.++
T Consensus       238 ~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l  304 (562)
T PRK05326        238 LTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPAL  304 (562)
T ss_pred             HHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999999999999998542     334567899999999999999999999985543333333333

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-32  Score=255.95  Aligned_cols=301  Identities=19%  Similarity=0.166  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHH
Q 043481           31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFK  110 (351)
Q Consensus        31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~  110 (351)
                      ...+++...++...+..|..+|-.+..+..|++.|.-.....+..+.+   + ...+.+++|..|+|++|++.+++.+|.
T Consensus        11 ~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~---~-Ay~vg~lALaiILfdgG~~T~lss~r~   86 (574)
T COG3263          11 LGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYP---F-AYMVGNLALAIILFDGGFGTQLSSFRV   86 (574)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccH---H-HHHHHHHHHHHHhhcCccCCcHHHHHH
Confidence            333444444444444444679999999999999997443322222211   1 245678999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc-chhHhhhhhhhhh
Q 043481          111 NFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP-FLYSIVFGEGVVN  189 (351)
Q Consensus       111 ~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~-~l~~ll~ges~~n  189 (351)
                      ..++.+.++++|+++|....+..++|++      +.+|.+++++||++.+||.++|.+++++.+.+ |+++++|-||+-|
T Consensus        87 a~~palsLATlGVl~Ts~Ltg~aA~~ll------~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl~erv~stLEiESGtN  160 (574)
T COG3263          87 AAGPALSLATLGVLITSGLTGVAAAYLL------NLDWLEGLLIGAIVGSTDAAAVFSLLGGKNLNERVASTLEIESGSN  160 (574)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHhhccccHHHHHHHHccCChhhhhhhhEEeecCCC
Confidence            9999999999999999999999999998      89999999999999999999999999998876 8999999999999


Q ss_pred             hHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481          190 DATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL  269 (351)
Q Consensus       190 D~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~  269 (351)
                      |+.++.+.-.+..+..++.+..++.. +..+++++..|.++|+..|++..++.+|.   +-+.-..+.+.++..++.|.+
T Consensus       161 DPmAvfLTitlieli~~get~l~~~~-ll~f~~q~glG~l~G~~gg~l~~~~Inr~---nLd~GL~pil~la~~Ll~fs~  236 (574)
T COG3263         161 DPMAVFLTITLIELIAGGETNLSWGF-LLGFLQQFGLGLLLGLGGGKLLLQLINRI---NLDSGLYPILALAGGLLIFSL  236 (574)
T ss_pred             CceeeehhHHHHHHHhccccccCHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHhh---ccccchhHHHHHHHHHHHHHH
Confidence            99999998888777655433233333 44488999999999999999999999876   234556789999999999999


Q ss_pred             HHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHHHHHHh
Q 043481          270 AELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDIDKWKASNARNIFAVSSTMF  349 (351)
Q Consensus       270 ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~~~~~~~~~~~~~~~~~~~i  349 (351)
                      ++.+|+||++|+++||+..+|..     -+.|+.+.+++|-+++++....|...|..+...+.|.....++.+++..+++
T Consensus       237 t~aiGGsG~LaVYl~Gll~GN~~-----i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifv  311 (574)
T COG3263         237 TGAIGGSGILAVYLAGLLLGNRP-----IRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFV  311 (574)
T ss_pred             HHHhcCcccHHHHHHHHHhCCCc-----chhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHH
Confidence            99999999999999999999864     4677888999999999999999999999998888999999999999888776


Q ss_pred             c
Q 043481          350 S  350 (351)
Q Consensus       350 ~  350 (351)
                      +
T Consensus       312 a  312 (574)
T COG3263         312 A  312 (574)
T ss_pred             H
Confidence            4

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=99.97  E-value=5.1e-29  Score=231.01  Aligned_cols=267  Identities=16%  Similarity=0.191  Sum_probs=204.0

Q ss_pred             HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH
Q 043481           38 CIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL  117 (351)
Q Consensus        38 ~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~  117 (351)
                      +.+.+.+.+| .++|+++++++.|+++||......++.  +    .-+.+.++++.+++|.+|+|+|++++||++++...
T Consensus         4 a~~~~~l~~~-l~lP~~v~~il~GillGp~~lg~i~~~--~----~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~   76 (273)
T TIGR00932         4 AVLAVPLSRR-LGIPSVLGYLLAGVLIGPSGLGLISNV--E----GVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFG   76 (273)
T ss_pred             HHHHHHHHHH-hCCCHHHHHHHHHHHhCcccccCCCCh--H----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3344555555 679999999999999999754432211  1    12457889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC-c-chhHhhhhhhhhhhHHHHH
Q 043481          118 FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET-P-FLYSIVFGEGVVNDATSIV  195 (351)
Q Consensus       118 la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~-~-~l~~ll~ges~~nD~~~ii  195 (351)
                      ++..++++++..++...++.+      ++++..++++|+++++|||+++.++++|.+. + +.++++.+|+.+||..+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~  150 (273)
T TIGR00932        77 VGVLQVLVPGVLLGLLLGHLL------GLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVP  150 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHH
Confidence            999999999777776556555      7899999999999999999999999999984 4 7999999999999999999


Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCc
Q 043481          196 LFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNL  275 (351)
Q Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~  275 (351)
                      ++.+.....++....  ...............++.+.+.++...|..|+..+ +++++.+...++..++..+.++|.+|.
T Consensus       151 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~la~~~g~  227 (273)
T TIGR00932       151 LLALLPLLATSASTE--HVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAE-LRPSELFTAGSLLLMFGSAYFADLLGL  227 (273)
T ss_pred             HHHHHHHHhcCCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCC
Confidence            998887665432111  11122223333444455566666777777776543 233455677788888999999999999


Q ss_pred             chHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 043481          276 SGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDA  327 (351)
Q Consensus       276 Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~  327 (351)
                      |+.++++++|++++|..+       +++.++..+.+..++.|++|+.+|+++
T Consensus       228 s~~lgaf~aGl~~~~~~~-------~~~l~~~l~~~~~~f~plFF~~~G~~~  272 (273)
T TIGR00932       228 SMALGAFLAGVVLSESEY-------RHKLESDLEPIGGVLLPLFFISVGMSV  272 (273)
T ss_pred             cHHHHHHHHHHHHcCCch-------HHHHHHHHHhHHHHHHHHHHHHhCccC
Confidence            999999999999997421       223445555566899999999999874

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=9.5e-29  Score=223.85  Aligned_cols=305  Identities=16%  Similarity=0.189  Sum_probs=243.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHH-hhccCCCccccccChhHHHHhhh
Q 043481           14 KVSASFLNTSTIIALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVL-LASKDRSSHLLVFNEDLFFLYLL   92 (351)
Q Consensus        14 ~~~~~~~~~~~~~~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~-~~~~~~~~~~~~~~~~~~~~i~L   92 (351)
                      +|++-+.+..+......... .....+++..++++..+.++....+.|+++||... ..++..+.+- +.-...+..+.|
T Consensus         2 aw~qleidkvh~al~~~g~F-~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~-d~it~ei~RvvL   79 (467)
T KOG4505|consen    2 AWRQLEIDKVHLALAASGGF-VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNK-DYITYEISRVVL   79 (467)
T ss_pred             CchhhcccHHHHHHHHHhhH-HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCc-chhhhhhhhhhH
Confidence            48888888887654433333 33344568899998889999999999999999765 4555443221 112234788999


Q ss_pred             HHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhcc
Q 043481           93 PPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQ  172 (351)
Q Consensus        93 ~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~  172 (351)
                      .+..|..+.|++.+++.++|++++.+..+.+...+++.+..+|.+.|     ++++.++++++++++||||+...++..+
T Consensus        80 cvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p-----~lnf~~Sl~iaaCiTaTDPiLsssIV~~  154 (467)
T KOG4505|consen   80 CVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIP-----NLNFLTSLLIAACITATDPILSSSIVGG  154 (467)
T ss_pred             hHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHccCCchhHHHHHhcC
Confidence            99999999999999999999999999999888898888888887764     8899999999999999999999999986


Q ss_pred             C----CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          173 D----ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNID---GTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT  244 (351)
Q Consensus       173 ~----~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~  244 (351)
                      .    ++| |+|+++.+||+-||+.+++++.....+..++..   ..+  +.....++....|+++|.++|++.+...|+
T Consensus       155 g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rd--wv~~~iLyec~fg~llG~vIG~l~r~~lk~  232 (467)
T KOG4505|consen  155 GKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRD--WVCDNILYECFFGCLLGCVIGYLSRQGLKF  232 (467)
T ss_pred             chHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCc--eehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4    367 899999999999999999998877766543221   223  366778899999999999999999999999


Q ss_pred             HHHhccC-CCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 043481          245 LYFLRHS-TDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYV  323 (351)
Q Consensus       245 ~~~~~~~-~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~v  323 (351)
                      .+++|-. +++...+-+.+++.+.++.+.+|.+.++..|++|..+++.++..  ++++  ..+..+.++.+++..+|++.
T Consensus       233 aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFs--k~t~--~s~v~~viD~lls~sfF~yf  308 (467)
T KOG4505|consen  233 AEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFS--KKTK--ESRVSEVIDLLLSLSFFLYF  308 (467)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhh--hhhh--hccHHHHHHHHHHHHHHHHh
Confidence            8753322 33445566777888999999999999999999999999877642  2322  24677888899999999999


Q ss_pred             hhhccccc
Q 043481          324 FMDALDID  331 (351)
Q Consensus       324 G~~~~~~~  331 (351)
                      |..+++.+
T Consensus       309 Gaiipwsq  316 (467)
T KOG4505|consen  309 GAIIPWSQ  316 (467)
T ss_pred             ccccchhh
Confidence            99997643

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=99.95  E-value=2.5e-30  Score=250.53  Aligned_cols=271  Identities=25%  Similarity=0.327  Sum_probs=57.3

Q ss_pred             HHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH
Q 043481           38 CIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL  117 (351)
Q Consensus        38 ~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~  117 (351)
                      +.+.+.. .||.++|+++++++.|+++||......++.     +.+.+.+.++++++++|++|+|+|.+++||++++...
T Consensus         8 ~~~~~~l-~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~-----~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~   81 (380)
T PF00999_consen    8 AFVAGIL-FRRLGIPSIIGYILVGIVLGPSGLGLLEPD-----NPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA   81 (380)
T ss_dssp             ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred             HHHHHHH-HHHhCCCHHHHHHHheeehhhhhhhhccch-----hhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            3343444 455679999999999999999876532221     1133568999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccC-CCc-chhHhhhhhhhhhhHHHHH
Q 043481          118 FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQD-ETP-FLYSIVFGEGVVNDATSIV  195 (351)
Q Consensus       118 la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~-~~~-~l~~ll~ges~~nD~~~ii  195 (351)
                      .+..++.+++...+...++.+   ...++++.+++++|+++++|||+.+.++++|. +.+ |.++++.+|+.+||..+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~  158 (380)
T PF00999_consen   82 LGLVGFLLPFILVGFLLSFFL---FILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAII  158 (380)
T ss_dssp             -----------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTT
T ss_pred             cccceeeehhhHHHHHHHHhh---ccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhh
Confidence            999999999887676666311   00188999999999999999999999999664 455 7999999999999999999


Q ss_pred             HHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCcchHHHHHHHHHHHHHHHhcC
Q 043481          196 LFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFL-RHSTDREGAPMMLMAYLSCILAELLN  274 (351)
Q Consensus       196 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~-~~~~~~~~~l~l~~~~~~~~~ae~~g  274 (351)
                      ++.+.....+++ ...+.......++..    +..|.+.|+...|+.++..++ +++++.+...++..++..|+++|.+|
T Consensus       159 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g  233 (380)
T PF00999_consen  159 LLSILISLAQAS-GQSSLGQLLLSFLWI----ILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILG  233 (380)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             hhhhhhhhhccc-ccccccchhcchhhh----hhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccc
Confidence            999887776221 122223334444444    444555555555555554432 24566788889999999999999999


Q ss_pred             cchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 043481          275 LSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDAL  328 (351)
Q Consensus       275 ~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~  328 (351)
                      .|++++++++|+.+++.+.+   ++.+++.+++++   .++++++|+.+|++++
T Consensus       234 ~s~~l~af~~Gl~~~~~~~~---~~~~~~l~~~~~---~~~~~lfF~~iG~~~~  281 (380)
T PF00999_consen  234 LSGILGAFIAGLILSNSPFA---ERLEEKLESFWY---GFFIPLFFVFIGMSLD  281 (380)
T ss_dssp             ------------------------------------------------------
T ss_pred             ccccceeeeeehcccccccc---chhhhcccchhh---HHHhhHHhhhhccccc
Confidence            99999999999999954332   234444555554   7999999999999986

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-24  Score=210.49  Aligned_cols=281  Identities=20%  Similarity=0.208  Sum_probs=200.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481           28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQ  107 (351)
Q Consensus        28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~  107 (351)
                      +.....++..+.+.+.+++| .++|+++++++.|+++||.......+.+ +    .-+.+.++++.+++|.+|+|.|.++
T Consensus         8 l~~~~iiL~~a~i~~~l~~r-l~lp~vlg~llaGiilGp~~~~~~~~~~-~----~i~~laelGvi~LlF~~GLE~~~~~   81 (397)
T COG0475           8 LLQLLILLLVAVILGPLFKR-LGLPPVLGYLLAGIILGPWGLLLIIESS-E----IIELLAELGVVFLLFLIGLEFDLER   81 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHhcCcccccccCCch-H----HHHHHHHHhHHHHHHHHHHCcCHHH
Confidence            44455666777777766666 5699999999999999993222221111 1    1145889999999999999999999


Q ss_pred             HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC-Cc-chhHhhhh
Q 043481          108 FFKNFTT-MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE-TP-FLYSIVFG  184 (351)
Q Consensus       108 l~~~~~~-i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~-~~-~l~~ll~g  184 (351)
                      +||++++ ....+..+............+..+      ++++..++++|++++.||.+.+.++++|.| .+ |..+.+.+
T Consensus        82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~  155 (397)
T COG0475          82 LKKVGRSVGLGVAQVGLTAPFLLGLLLLLGIL------GLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILG  155 (397)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHHHHHHHHHHh------ccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            9999999 555565555444332221222123      789999999999999999999999999987 44 79999999


Q ss_pred             hhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcchHHHHHHH
Q 043481          185 EGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG-LLSAYIIKTLYFLRHSTDREGAPMMLMA  263 (351)
Q Consensus       185 es~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~  263 (351)
                      ...++|..+++++.++.....++......   ..........-.++-...| ++..++.|+..+ .+.++.....++.++
T Consensus       156 ~~i~~Di~~i~lLai~~~l~~~g~~~~~~---~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~-~~~~e~~~~~~l~i~  231 (397)
T COG0475         156 ALVFDDIAAILLLAIVPALAGGGSGSVGF---ILGLLLAILAFLALLLLLGRYLLPPLFRRVAK-TESSELFILFVLLLV  231 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCccHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHH
Confidence            99999999999999988886543222111   1111111111112222223 445555555532 244555677888899


Q ss_pred             HHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHH-HHHHHHHHHhhhhcccc
Q 043481          264 YLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISF-IAETFIFLYVFMDALDI  330 (351)
Q Consensus       264 ~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Fv~vG~~~~~~  330 (351)
                      +...+++|..|.|.++++|.+|+.+++...+      +++.++-.+.+.+ ++-|+||+.+|+.++..
T Consensus       232 l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~------~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~  293 (397)
T COG0475         232 LGAAYLAELLGLSMILGAFLAGLLLSESEYR------KHELEEKIEPFGDGLFIPLFFISVGMSLDLG  293 (397)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHhcccccc------hHHHHHHHHhHHhHHHHHHHHHHhhHHcCHH
Confidence            9999999999999999999999999975322      1455666777777 99999999999998543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=99.94  E-value=3e-24  Score=219.31  Aligned_cols=274  Identities=16%  Similarity=0.098  Sum_probs=198.6

Q ss_pred             HHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHH
Q 043481           30 VFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFF  109 (351)
Q Consensus        30 i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~  109 (351)
                      ....++..+.+...+.+| .++|.+++++++|+++||......+..  .    +-+.+.++++.+++|..|+|+|++++|
T Consensus         9 ~~~~~l~~a~i~~~l~~r-l~lp~vlgyilaGillGP~~lg~i~~~--~----~i~~laelGvv~LlF~iGLEl~~~~l~   81 (621)
T PRK03562          9 QALIYLGAAVLIVPIAVR-LGLGSVLGYLIAGCIIGPWGLRLVTDV--E----SILHFAEFGVVLMLFVIGLELDPQRLW   81 (621)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhCcccccCCCCH--H----HHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence            334445555555565555 679999999999999999765433211  1    124588999999999999999999999


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC-c-chhHhhhhhhh
Q 043481          110 KNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET-P-FLYSIVFGEGV  187 (351)
Q Consensus       110 ~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~-~-~l~~ll~ges~  187 (351)
                      +.+++++.++..++.+++...+...++ +      +++|..|+++|.+++.||++.+.++++|.+. + +.++...+..+
T Consensus        82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~-~------g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll  154 (621)
T PRK03562         82 KLRRSIFGGGALQMVACGGLLGLFCML-L------GLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILL  154 (621)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH
Confidence            999999999999998888766555444 3      7899999999999999999999999999873 3 78999999999


Q ss_pred             hhhHHHHHHHHHHHhhhccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCCcchHHHHHHHH
Q 043481          188 VNDATSIVLFNAIQSFDFNNID--GTVALNLLGTFLYLYFTSTALGIVLGL-LSAYIIKTLYFLRHSTDREGAPMMLMAY  264 (351)
Q Consensus       188 ~nD~~~iil~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~i~~G~~~G~-~~~~~~~~~~~~~~~~~~~~~l~l~~~~  264 (351)
                      +||..+++++.++..+...+.+  ....+....    ..++.++..++.|. +..++.++..+ ++.++.....++.+++
T Consensus       155 ~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~l~~~l~~~~~~-~~~~e~~~~~~l~lv~  229 (621)
T PRK03562        155 FQDIAAIPLVAMIPLLAASGASTTLGAFALSAL----KVAGALALVVLGGRYVTRPALRFVAR-SGLREVFTAVALFLVF  229 (621)
T ss_pred             HHHHHHHHHHHHHHHHccCCCccchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence            9999999998876555432111  111111111    11222222233332 34455555432 2334445566777788


Q ss_pred             HHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481          265 LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD  329 (351)
Q Consensus       265 ~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~  329 (351)
                      ++.+++|.+|+|..+++|++|+++++.       +.+++.++-.+.+..++.++||+.+|+.+..
T Consensus       230 ~~a~la~~~Gls~~lGAFlAGl~l~~~-------~~~~~le~~i~pf~~lll~lFFi~vG~~id~  287 (621)
T PRK03562        230 GFGLLMEEVGLSMALGAFLAGVLLASS-------EYRHALESDIEPFKGLLLGLFFIAVGMSIDF  287 (621)
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccH
Confidence            899999999999999999999999963       2344455556666678899999999999753

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=99.93  E-value=1.5e-23  Score=213.74  Aligned_cols=270  Identities=14%  Similarity=0.091  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhh
Q 043481           33 TLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF  112 (351)
Q Consensus        33 ~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~  112 (351)
                      .++..+.+...+.+| .++|.+++++++|+++||......+...      +-+.+.++++.+++|..|+|+|++++|+.+
T Consensus        12 ~~l~~a~~~~~l~~r-l~~p~ilg~ilaGillGP~~lg~i~~~~------~i~~laelGvv~LLF~iGLel~~~~l~~~~   84 (601)
T PRK03659         12 LFLFAAVVAVPLAQR-LGIGAVLGYLLAGIAIGPWGLGFISDVD------EILHFSELGVVFLMFIIGLELNPSKLWQLR   84 (601)
T ss_pred             HHHHHHHHHHHHHHH-hCCChHHHHHHHHHHhccccccCCCcHH------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            344444454555555 6799999999999999997654332110      124578999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCCc--chhHhhhhhhhhhh
Q 043481          113 TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDETP--FLYSIVFGEGVVND  190 (351)
Q Consensus       113 ~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~~--~l~~ll~ges~~nD  190 (351)
                      +.++.++..++++++.+.+...++ +      +++|..++++|..++.||++.+.++++|.+..  +.+++..+..++||
T Consensus        85 ~~~~~~g~~~v~~t~~~~~~~~~~-~------g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D  157 (601)
T PRK03659         85 RSIFGVGAAQVLLSAAVLAGLLML-T------DFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD  157 (601)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-H------ccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence            999999999999998776655443 3      78999999999999999999999999998843  68889999999999


Q ss_pred             HHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481          191 ATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG-LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL  269 (351)
Q Consensus       191 ~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G-~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~  269 (351)
                      ..+++++.+...+...+.+...+.....    . ...++..++.| ++..++.++..+ .+.++.....++.+++++.++
T Consensus       158 i~~i~ll~l~~~l~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l  231 (601)
T PRK03659        158 LAVIPALALVPLLAGSADEHFDWMKIGM----K-VLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALF  231 (601)
T ss_pred             HHHHHHHHHHHHHhcCCCcchHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHH
Confidence            9999888876555432221111211111    1 11111112223 233444444422 233444556666677888889


Q ss_pred             HHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481          270 AELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD  329 (351)
Q Consensus       270 ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~  329 (351)
                      +|.+|+|+.+++|++|+++++.       +.+++.++-.+.+..++.++||+.+|+.+..
T Consensus       232 ~~~~Gls~~LGAFlaGl~l~~s-------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~  284 (601)
T PRK03659        232 MDALGLSMALGTFIAGVLLAES-------EYRHELEIAIEPFKGLLLGLFFISVGMALNL  284 (601)
T ss_pred             HHHhCccHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence            9999999999999999999973       2233344444555568899999999999754

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=99.93  E-value=5e-23  Score=215.83  Aligned_cols=287  Identities=13%  Similarity=0.081  Sum_probs=192.0

Q ss_pred             HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCcccccc----ChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481           32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVF----NEDLFFLYLLPPIIFNAGFQVKKKQ  107 (351)
Q Consensus        32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~----~~~~~~~i~L~~ilF~~gl~l~~~~  107 (351)
                      .++++.+.+++.+++| .++|.+++++++|+++||......+......+..    .-+.+.++++.+++|.+|+|+|.+.
T Consensus        49 ~lil~~a~l~~~ll~r-l~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~  127 (832)
T PLN03159         49 TLVVVTTRLLVFILKP-FRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV  127 (832)
T ss_pred             HHHHHHHHHHHHHHHh-cCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            3444555555555554 6799999999999999998765432211111111    1256889999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhhhhh
Q 043481          108 FFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIVFGE  185 (351)
Q Consensus       108 l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll~ge  185 (351)
                      +||+.++.+..+..++++++.+.....+++ ...+........++++|.++|.|+..++.++++|.|.  ++..++..+.
T Consensus       128 lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l-~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsa  206 (832)
T PLN03159        128 IRRTGKKALAIAIAGMALPFCIGLAFSFIF-HQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAMSA  206 (832)
T ss_pred             HHhcchHHHHHHHHHHHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHH
Confidence            999999999999999988876544444433 2211101123456889999999999999999999884  3799999999


Q ss_pred             hhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHH
Q 043481          186 GVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYL  265 (351)
Q Consensus       186 s~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~  265 (351)
                      +.+||..+++++.++..+...+......   +...+..+...++..++...+..|+.|+....++.++....+.+.++++
T Consensus       207 avv~Dl~~~ilLav~~~l~~~~~~~~~~---l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl~  283 (832)
T PLN03159        207 ALVNDMCAWILLALAIALAENDSTSLAS---LWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVMI  283 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHHH
Confidence            9999999999998776665432211111   1111111111122222333344455544321112233445567777788


Q ss_pred             HHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 043481          266 SCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALD  329 (351)
Q Consensus       266 ~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~  329 (351)
                      +.+++|.+|.|.++++|++|+++.+.      +..+...+++-.....++.++||+.+|+.+..
T Consensus       284 ~a~lae~~Gl~~ilGAFlaGl~lp~~------~~~~~l~ekle~~~~~lflPlFFv~vGl~idl  341 (832)
T PLN03159        284 SGFITDAIGTHSVFGAFVFGLVIPNG------PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNV  341 (832)
T ss_pred             HHHHHHHhCccHHHHHHHHhhccCCc------chHHHHHHHHHHHHHHHHHHHHHHHhhheeeH
Confidence            88999999999999999999999852      11122233444444569999999999999743

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=99.91  E-value=3.7e-22  Score=202.60  Aligned_cols=277  Identities=15%  Similarity=0.100  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481           32 FTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN  111 (351)
Q Consensus        32 ~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~  111 (351)
                      ..++..+.+++.+.+| .++|..++++++|+++||......+..     + ..+.+.++++.+++|.+|+|+|++++||.
T Consensus        12 ~~~l~~a~~~~~l~~r-l~~P~ivg~IlaGillGp~~lg~~~~~-----~-~~~~la~lGli~llF~~Gle~d~~~l~~~   84 (558)
T PRK10669         12 VGGLVLAFILGMLANR-LRISPLVGYLLAGVLAGPFTPGFVADT-----K-LAPELAELGVILLMFGVGLHFSLKDLMAV   84 (558)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhCccccccccch-----H-HHHHHHHHHHHHHHHHhHhcCCHHHHHHH
Confidence            3444555555665555 679999999999999999765432211     1 13568999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC-Cc-chhHhhhhhhhhh
Q 043481          112 FTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE-TP-FLYSIVFGEGVVN  189 (351)
Q Consensus       112 ~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~-~~-~l~~ll~ges~~n  189 (351)
                      ++.....+..+++.+.. .+...++.+      ++++..++++|++++.|+++++.++++|.+ .+ +..++..+.+.+|
T Consensus        85 ~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~  157 (558)
T PRK10669         85 KSIAIPGAIAQIAVATL-LGMALSAVL------GWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVE  157 (558)
T ss_pred             hhHHHHHHHHHHHHHHH-HHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHH
Confidence            87766666666665554 333444444      789999999999999999999999999988 34 7999999999999


Q ss_pred             hHHHHHHHHHHHhhhcc-CCchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Q 043481          190 DATSIVLFNAIQSFDFN-NIDGTVALNLLGTFLYLYFTS----TALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAY  264 (351)
Q Consensus       190 D~~~iil~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~----i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~  264 (351)
                      |..+++++.+...+... ..+..+.........+.+...    ....++..+...|+.++..+ ++.++......+..++
T Consensus       158 Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~e~~~l~~l~~~l  236 (558)
T PRK10669        158 DLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAA-TGSRELFTLSVLALAL  236 (558)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHH
Confidence            99998888766544321 000111111111111111211    22233333444555555432 2222333333444455


Q ss_pred             HHH-HHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481          265 LSC-ILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI  330 (351)
Q Consensus       265 ~~~-~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~  330 (351)
                      +.. ..+|.+|+|+.+++|++|+++++..       .+++..+-...+..++.++||+.+|+++...
T Consensus       237 ~~a~~~~~~lGls~~lGAflaGl~l~~~~-------~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~  296 (558)
T PRK10669        237 GIAFGAVELFDVSFALGAFFAGMVLNESE-------LSHRAAHDTLPLRDAFAVLFFVSVGMLFDPM  296 (558)
T ss_pred             HHHHHHHHHcCccHHHHHHHHHHHHhCCh-------hHHHHHHHHhhHHHHHHHHHHHHhhhhcCHH
Confidence            443 4579999999999999999998632       1222222222345678999999999997543

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=99.61  E-value=1e-13  Score=125.08  Aligned_cols=278  Identities=17%  Similarity=0.188  Sum_probs=178.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHH
Q 043481           28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQ  107 (351)
Q Consensus        28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~  107 (351)
                      +...+..+..+.++|.+-.| .|+|+.++++++|++.||+.......+     ++. +.+.++.+..++|..|++.+.++
T Consensus         8 i~tiv~gl~lAFl~G~lA~r-lrlsPLVGyL~AGv~~gpftpGFvad~-----~La-~~LAelGViLLmFgvGLhfslkd   80 (408)
T COG4651           8 ITTIVGGLVLAFLLGALANR-LRLSPLVGYLLAGVLAGPFTPGFVADQ-----TLA-PELAELGVILLMFGVGLHFSLKD   80 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhcCCCCCCcccch-----hHH-HHHHHhhHHHHHHhcchheeHHH
Confidence            33444556667776665555 679999999999999999875543222     112 35799999999999999999998


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhh
Q 043481          108 FFKNFTTMLLFGICGTVISFYLI---SVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIV  182 (351)
Q Consensus       108 l~~~~~~i~~la~~g~~~~~~~~---~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll  182 (351)
                      +...+.    ++++|.+......   +...-+..      ||++...+.+|-.+|-.|.++..+-++|.+.  ++-+++-
T Consensus        81 LLavk~----iAipgAl~qia~at~lg~gL~~~l------gws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iA  150 (408)
T COG4651          81 LLAVKA----IAIPGALAQIALATLLGMGLSSLL------GWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIA  150 (408)
T ss_pred             HhhHHH----HhcchHHHHHHHHHHHHhHHHHHc------CCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEE
Confidence            876543    3344444443332   23333333      8999999999999999999999999998772  2456666


Q ss_pred             hhhhhhhhHHHHHHHHHHHhhhc----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCCCcchH
Q 043481          183 FGEGVVNDATSIVLFNAIQSFDF----NNIDGTVALNLLGTFLYLYFTSTALGIVLGLLS-AYIIKTLYFLRHSTDREGA  257 (351)
Q Consensus       183 ~ges~~nD~~~iil~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~-~~~~~~~~~~~~~~~~~~~  257 (351)
                      .|==+..|...+......-+++.    ++....+....+...+.+...-+.++.++|.-. -|+..+.-. ..+++....
T Consensus       151 iGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~-tGsrElf~L  229 (408)
T COG4651         151 IGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA-TGSRELFTL  229 (408)
T ss_pred             EeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHH
Confidence            77778888887766654433321    122222222233333334444556677777643 344444321 222333344


Q ss_pred             HHHHHHH-HHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 043481          258 PMMLMAY-LSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDALDI  330 (351)
Q Consensus       258 l~l~~~~-~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~~~  330 (351)
                      ..+..++ .+|+.+|.+|.|.-+++|++|+++++.+   .+++..+..-    .+...+..+||+-+||....+
T Consensus       230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~sl----pLrdaFaVlFFvsVGmlf~P~  296 (408)
T COG4651         230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAEDSL----PLRDAFAVLFFVSVGMLFDPM  296 (408)
T ss_pred             HHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHhcc----CHHHHHHHHHHHHhhhhcCcH
Confidence            4444444 3456778999999999999999998532   2222222222    234478889999999998654

>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.7e-11  Score=126.18  Aligned_cols=280  Identities=16%  Similarity=0.100  Sum_probs=180.6

Q ss_pred             HHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccCh----hHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHH
Q 043481           41 IGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNE----DLFFLYLLPPIIFNAGFQVKKKQFFKNFTTML  116 (351)
Q Consensus        41 ~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~----~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~  116 (351)
                      +.+++-|+.++|..+-.++.|+++||..+...+......++.+.    +.+..++.-+.+|..|+++|.+.+||+.++..
T Consensus        37 ~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~  116 (769)
T KOG1650|consen   37 LLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAI  116 (769)
T ss_pred             HHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeE
Confidence            34555566779999999999999999876443222111222111    44667778889999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----HHHHHHhhhhcccccHHHHHHHhccCCC--cchhHhhhhhhhhhh
Q 043481          117 LFGICGTVISFYLISVGAFSIFKKMGMTSLR----IQDFLAIGAILSATDSVCTLQVLSQDET--PFLYSIVFGEGVVND  190 (351)
Q Consensus       117 ~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~----~~~alllGailsaTdp~~v~~il~~~~~--~~l~~ll~ges~~nD  190 (351)
                      .++..++++++...................+    ...=...+...+.|+-....+++.|.+.  ++++++...++.+||
T Consensus       117 ~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~d  196 (769)
T KOG1650|consen  117 VIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVND  196 (769)
T ss_pred             EEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhh
Confidence            8888888777543222222221011000111    1134567788899999999999999883  479999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHH
Q 043481          191 ATSIVLFNAIQSFDFNNID-GTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCIL  269 (351)
Q Consensus       191 ~~~iil~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~  269 (351)
                      ..++.++.......+.... +.   .....+...+...+..=.++-....|+.|+....++..+......+...+.+...
T Consensus       197 v~~~~ll~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~  273 (769)
T KOG1650|consen  197 VAGWILLALALAFSSELKLSPL---RSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICVTLLGVLASAFL  273 (769)
T ss_pred             HHHHHHHHHHHHHhccCCCcch---HHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehhhHHHHHHHHHH
Confidence            9999988877766554321 11   1122222222222222223334555555553222223344566677778888888


Q ss_pred             HHhcC-cchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 043481          270 AELLN-LSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAETFIFLYVFMDAL  328 (351)
Q Consensus       270 ae~~g-~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv~vG~~~~  328 (351)
                      .+.++ .+++.++|+.|+.+-+..+     -.....+++-.....++.++.|...|....
T Consensus       274 ~~~~~~i~~~~Gaf~~Gl~iP~~~p-----~g~~L~ekle~~~~~~llPl~~~~~G~k~d  328 (769)
T KOG1650|consen  274 TDLIGGIHSIFGAFILGLAIPHGPP-----LGSALIEKLEDLVSGLLLPLYFAISGLKTD  328 (769)
T ss_pred             HHHhccccccchhheEEEecCCCCc-----hhHHHHHHHHHHHHHHHHHHHHHhhcccee
Confidence            88887 7889999999999986432     111222333334456889999999998864

>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=98.77  E-value=2.1e-06  Score=83.15  Aligned_cols=207  Identities=15%  Similarity=0.126  Sum_probs=124.4

Q ss_pred             HHHHhhhHHHhhHhhhcCCHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481           86 LFFLYLLPPIIFNAGFQVKKK-------QFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL  158 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~-------~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail  158 (351)
                      .+-+....+--|..|+|++.+       ..||...+ ..-++.|++.++.     .|+.+.      ..-..+.-=-++-
T Consensus        65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP-~~aAlGGm~vPal-----iy~~~n------~~~~~~~~GW~Ip  132 (423)
T PRK14853         65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALP-VAAALGGMIVPAL-----IYVAVN------LAGGGALRGWAIP  132 (423)
T ss_pred             HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHH-HHHHHHhHHHHHH-----HHHHHh------CCchhhhhhhhhh
Confidence            344455566668899999654       33333333 2336667666653     344442      2112222222567


Q ss_pred             ccccHHHHHHHhccCC--Cc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          159 SATDSVCTLQVLSQDE--TP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG  235 (351)
Q Consensus       159 saTdp~~v~~il~~~~--~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G  235 (351)
                      ++||.+.+..++...|  .| +++..+.+-+++||..++++-.++.   .++.+..   ....             ....
T Consensus       133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t~~i~~~---~L~~-------------a~~~  193 (423)
T PRK14853        133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---TSELNLE---ALLL-------------ALVP  193 (423)
T ss_pred             hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---CCCCCHH---HHHH-------------HHHH
Confidence            8999999999998865  46 7999999999999999999877665   2222211   1110             0011


Q ss_pred             HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCC-C----hhHHHHHHHHHH-
Q 043481          236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNV-T----ESSRITTKHAFA-  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~-~----~~~~~~~~~~~~-  309 (351)
                      ...-+..++    ++.++.  ...+.+....++..+..|.++.+|.++.|+.+....+.+. +    ++..++.++..+ 
T Consensus       194 ~~~l~~l~~----~~V~~~--~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p  267 (423)
T PRK14853        194 LALFWLLVQ----KRVRKW--WLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRP  267 (423)
T ss_pred             HHHHHHHHH----cCCchh--hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHH
Confidence            111223332    233332  2333335577889999999999999999999964222110 0    122344444444 


Q ss_pred             HHHHHHHHHH-HHHhhhhccc
Q 043481          310 TISFIAETFI-FLYVFMDALD  329 (351)
Q Consensus       310 ~~~~~~~~~~-Fv~vG~~~~~  329 (351)
                      .+.+++-|+| |.-.|..+..
T Consensus       268 ~V~~~ILPLFAFANaGV~l~~  288 (423)
T PRK14853        268 LSAGVAVPVFAFFSAGVAIGG  288 (423)
T ss_pred             HHHHHHHHHHHHHHhhheecC
Confidence            4467999999 9999999854

>TIGR00773 NhaA Na+/H+ antiporter NhaA

Probab=97.98  E-value=0.00027  Score=67.46  Aligned_cols=204  Identities=15%  Similarity=0.180  Sum_probs=119.5

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHh---hhHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKN---FTTM---LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS  159 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~---~~~i---~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails  159 (351)
                      +-+....+--|..|+|+|.+-+...   .|+.   ..-+..|++.++.     .|..+.. |-+      ...=| ++=+
T Consensus        56 iNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~-----iy~~~n~-~~~------~~~~GW~IP~  123 (373)
T TIGR00773        56 INDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPAL-----IYLAFNA-NDP------ITREGWAIPA  123 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheec-CCC------cccCcccccc
Confidence            3445555666788999987755422   2221   2225555555543     3444421 100      00112 4558


Q ss_pred             cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL  236 (351)
Q Consensus       160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~  236 (351)
                      +||.+-...++.-.  |.| .+|.-+.+-++.||.-+++.-.++..   ++.+..   ...             ..+.+.
T Consensus       124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~i~~~---~L~-------------~a~~~~  184 (373)
T TIGR00773       124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---NDLSMA---ALL-------------VAAVAI  184 (373)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CCCCHH---HHH-------------HHHHHH
Confidence            89999999988654  466 69999999999999999887665542   122211   111             111122


Q ss_pred             HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHH-HHHH
Q 043481          237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATI-SFIA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  315 (351)
                      ..-+..+|.    +.++....  .......++..+..|.++.+|.++.|+++.++.+.+  ++..++.++..+.. .++.
T Consensus       185 ~~l~~~~~~----~v~~~~~y--~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~--~~pl~rleh~L~p~v~~li  256 (373)
T TIGR00773       185 AVLAVLNRC----GVRRLGPY--MLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKG--ESPLKRLEHVLHPWVAYLI  256 (373)
T ss_pred             HHHHHHHHc----CCchhhHH--HHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCC--CCHHHHHHHHHHHHHHHHH
Confidence            223344432    33332222  223334444448999999999999999998743322  23345666666655 4678


Q ss_pred             HHHH-HHHhhhhccc
Q 043481          316 ETFI-FLYVFMDALD  329 (351)
Q Consensus       316 ~~~~-Fv~vG~~~~~  329 (351)
                      .|+| |.-.|..+..
T Consensus       257 lPlFAFanAGv~l~~  271 (373)
T TIGR00773       257 LPLFAFANAGVSLQG  271 (373)
T ss_pred             HHHHHHHhcCeeeec
Confidence            8999 9999999844

These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=97.02  E-value=0.26  Score=46.63  Aligned_cols=33  Identities=12%  Similarity=0.282  Sum_probs=26.2

Q ss_pred             ChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHH
Q 043481           83 NEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTM  115 (351)
Q Consensus        83 ~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i  115 (351)
                      ++|....+.+..+.|..|+++|.+++++..++.
T Consensus        28 ~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~   60 (313)
T PF13593_consen   28 KPEYVIKYGVALIFFISGLSLPTEELKAALRNW   60 (313)
T ss_pred             chhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcc
Confidence            445667778888899999999999998765553

>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH

Probab=96.60  E-value=0.055  Score=51.94  Aligned_cols=206  Identities=17%  Similarity=0.199  Sum_probs=106.0

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHH----HhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFF----KNFTTM--LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL  158 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~----~~~~~i--~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail  158 (351)
                      .+-+....+--|..|+|++.+-..    +.++..  ..-++.|++.++.     .|..+..    +-+  . -.=| ++=
T Consensus        58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~----~~~--~-~~~GW~IP  125 (378)
T PF06965_consen   58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNA----GGP--E-AAHGWAIP  125 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG------SST--T-HHHHTSSS
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeec----CCC--C-cCceEEec
Confidence            444566666778899999877543    222221  2235555554432     2444421    111  0 1222 567


Q ss_pred             ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG  235 (351)
Q Consensus       159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G  235 (351)
                      ++||.+-...++.-.  +.| .+|..+.+-++.||..++..-.++.+   ++.+   +....             ....+
T Consensus       126 ~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~i~---~~~L~-------------~a~~~  186 (378)
T PF06965_consen  126 MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DGIS---LLWLL-------------LAAAA  186 (378)
T ss_dssp             S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----------HHHHH-------------HHHHH
T ss_pred             ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CCCC---HHHHH-------------HHHHH
Confidence            899999999998754  466 59999999999999999988776652   1221   11111             11111


Q ss_pred             HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccC--CChhHHHHHHHHHHHHHH
Q 043481          236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHN--VTESSRITTKHAFATISF  313 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~~~  313 (351)
                      ...-+..+|.    +.++.  ..........++.-..-|.++-+|-++.|+.+..+.+.+  ..++.-++.++..+....
T Consensus       187 ~~~l~~l~r~----~v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~  260 (378)
T PF06965_consen  187 LLLLFVLNRL----GVRSL--WPYLLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVA  260 (378)
T ss_dssp             HHHHHHHHHT----T---T--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHC----CCcee--hHHHHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhh
Confidence            1222334432    22222  223344456777777889999999999999998765542  112233455555555544


Q ss_pred             HHHHHHHH--Hhhhhcc
Q 043481          314 IAETFIFL--YVFMDAL  328 (351)
Q Consensus       314 ~~~~~~Fv--~vG~~~~  328 (351)
                      ..-.-+|.  =.|..+.
T Consensus       261 ~~IlPlFAlaNAGV~l~  277 (378)
T PF06965_consen  261 FVILPLFALANAGVSLS  277 (378)
T ss_dssp             HTHHHHHHHHHS----S
T ss_pred             hhhHHhHhheeCceEEe
Confidence            33333444  4455543

NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=96.27  E-value=1  Score=42.36  Aligned_cols=112  Identities=19%  Similarity=0.191  Sum_probs=68.8

Q ss_pred             CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 043481           49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY  128 (351)
Q Consensus        49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~  128 (351)
                      ..+++....++.|++++......++ ...+-.++..+.+.+++    +-.-|.+++.+++.+..++.+......+..+..
T Consensus        24 ~~l~~~~~AillG~~i~n~~~~~~~-~~~~Gi~~~~k~~Lr~g----IVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~   98 (305)
T PF03601_consen   24 PGLGALLIAILLGMLIGNLFFGLPA-RFKPGIKFSSKKLLRLG----IVLLGFRLSFSDILALGWKGLLIIIIVVILTFL   98 (305)
T ss_pred             cCccHHHHHHHHHHHHhhhccCCcH-HHHhHHHHHHHHHHHHH----HHHHCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence            4578888889999999861111111 11111222233344444    456699999999999999877777666655554


Q ss_pred             HHHHHHHHHH-hhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhcc
Q 043481          129 LISVGAFSIF-KKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLSQ  172 (351)
Q Consensus       129 ~~~~~~~~~~-~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~~  172 (351)
                      ..    +++. +.+   +.|...+.++|   ++..++..+++.++.|.
T Consensus        99 ~~----~~lg~r~~---~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a  139 (305)
T PF03601_consen   99 LT----YWLGRRLF---GLDRKLAILIAAGTSICGASAIAATAPVIKA  139 (305)
T ss_pred             HH----HHHHHHHh---CCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence            33    3333 333   66888888888   45555555666666654

; GO: 0016021 integral to membrane

>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=96.06  E-value=0.28  Score=47.29  Aligned_cols=203  Identities=15%  Similarity=0.176  Sum_probs=114.5

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHHHhh---hH---HHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCHHHHHHhhh
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFFKNF---TT---MLLFGICGTVISFYLISVGAFSIFKKMG---MTSLRIQDFLAIGA  156 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g---~~~~~~~~alllGa  156 (351)
                      .+-+....+--|..|+|++.+-.....   |+   ...-|+.|++.++.     .|+.+..-+   ..||         +
T Consensus        62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAl-----Iy~~~n~g~~~~~~GW---------g  127 (389)
T PRK09560         62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPAL-----IYAAFNYNNPETLRGW---------A  127 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHheeecCCCcccCcc---------c
Confidence            344455666678889999877554222   22   12225555555543     244432100   0123         3


Q ss_pred             hcccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 043481          157 ILSATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIV  233 (351)
Q Consensus       157 ilsaTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~  233 (351)
                      +=++||.+-...++.-.  +.| .++.-+.+-++.||..+++.-.++..   ++.+.   ....             ..+
T Consensus       128 IPmATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~i~~---~~L~-------------~a~  188 (389)
T PRK09560        128 IPAATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SDLSL---PALA-------------LAA  188 (389)
T ss_pred             cccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCCCH---HHHH-------------HHH
Confidence            55789999999998754  466 68999999999999999887665542   12221   1111             111


Q ss_pred             HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHH
Q 043481          234 LGLLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISF  313 (351)
Q Consensus       234 ~G~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (351)
                      .+...-+..+|.    +.+.  ...........++.-..-|.++-+|.++.|+++..+.+.+..++.-++.+|..+....
T Consensus       189 ~~~~~l~~ln~~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~  262 (389)
T PRK09560        189 IAIAVLFLLNRL----GVTK--LTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA  262 (389)
T ss_pred             HHHHHHHHHHHc----CCcc--chHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence            112222334432    2222  2333445567778888899999999999999998643322111223455565665554


Q ss_pred             HHHHHHHHHh--hhhc
Q 043481          314 IAETFIFLYV--FMDA  327 (351)
Q Consensus       314 ~~~~~~Fv~v--G~~~  327 (351)
                      ..-.-+|.+.  |..+
T Consensus       263 ~~IlPlFAlaNAGV~l  278 (389)
T PRK09560        263 FAILPLFAFANAGVSL  278 (389)
T ss_pred             hhhHHHHHhhcCCeee
Confidence            4444445443  4444

>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed

Probab=95.66  E-value=0.32  Score=46.89  Aligned_cols=202  Identities=14%  Similarity=0.168  Sum_probs=112.1

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHh---hhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKN---FTT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS  159 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~---~~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails  159 (351)
                      +-+....+--|..|+|++.+-....   +|+   ...-|..|++.++.     .|+.+.. |-+      ...=| ++=+
T Consensus        63 iNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAl-----iy~~~n~-~~~------~~~~GWaIP~  130 (388)
T PRK09561         63 INDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPAL-----IYLLFNY-ADP------VTREGWAIPA  130 (388)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHH-----HHhheec-CCC------cccCcccccc
Confidence            4445556666888999987765422   222   12235555555543     3444421 100      00112 4558


Q ss_pred             cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL  236 (351)
Q Consensus       160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~  236 (351)
                      +||.+-+..++.-.  |.| .++.-+.+-++.||..+++.-.++..   ++.++.   ...       .      .....
T Consensus       131 ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~~---~L~-------~------a~~~~  191 (388)
T PRK09561        131 ATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SDLSMV---SLG-------V------AAVAI  191 (388)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCccHH---HHH-------H------HHHHH
Confidence            89999999998644  466 68999999999999999987665542   222211   110       1      11111


Q ss_pred             HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHHH
Q 043481          237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIAE  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (351)
                      ..-+..+|.    +.+.  ...........++.-..-|.++-+|-++.|+.+..+.+++  ++.-++.+|..+......-
T Consensus       192 ~~l~~ln~~----~v~~--~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~--~~pl~rleh~L~p~v~~~I  263 (388)
T PRK09561        192 AVLAVLNLC----GVRR--TSVYILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAERLEHGLHPWVAFLI  263 (388)
T ss_pred             HHHHHHHHc----CCcc--chHHHHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCC--CCHHHHHHHHhhhhhhhee
Confidence            222333432    2222  2333445567788888899999999999999998643322  1223445555554444433


Q ss_pred             HHHHHHh--hhhc
Q 043481          317 TFIFLYV--FMDA  327 (351)
Q Consensus       317 ~~~Fv~v--G~~~  327 (351)
                      .-+|.+.  |..+
T Consensus       264 lPlFAfaNAGV~l  276 (388)
T PRK09561        264 LPLFAFANAGVSL  276 (388)
T ss_pred             HHHHHhhcCCeee
Confidence            3444443  5444

>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=95.58  E-value=0.49  Score=46.20  Aligned_cols=167  Identities=16%  Similarity=0.186  Sum_probs=98.1

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhh---hHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcc
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNF---TTM---LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILS  159 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~---~~i---~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ails  159 (351)
                      +-+....+--|..|+|++.+-+.-..   |+.   ..-|+.|++.+++     .|+.+.. |-   +  .  .=| ++=+
T Consensus        67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAl-----Iy~~~n~-~~---~--~--~~GWgIPm  133 (423)
T PRK14855         67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAA-----LYTALNA-GG---P--G--ASGWGVPM  133 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHH-----HHheeec-CC---C--c--cCcccccc
Confidence            44455566667889999877654222   221   2225555555543     3444421 10   1  0  122 4668


Q ss_pred             cccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          160 ATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGL  236 (351)
Q Consensus       160 aTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~  236 (351)
                      +||.+-+..++.-.  +.| .++.-+.+-++.||..+++.-.++..   ++.+   +....             ..+.+.
T Consensus       134 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~---~~~L~-------------~a~~~~  194 (423)
T PRK14855        134 ATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGLN---LLALL-------------LAALTW  194 (423)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCCC---HHHHH-------------HHHHHH
Confidence            99999999998754  467 69999999999999999876555442   1222   11111             111111


Q ss_pred             HHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhc
Q 043481          237 LSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHY  291 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~  291 (351)
                      ..-+..+|.    +.+..  ...+......++.-..-|.++-+|-++.|+++..+
T Consensus       195 ~~l~~ln~~----~v~~~--~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~  243 (423)
T PRK14855        195 ALALLAGRL----GVTSL--KIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIR  243 (423)
T ss_pred             HHHHHHHHc----CCccc--cHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccc
Confidence            222333432    22222  33334556778888889999999999999999753

>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=95.48  E-value=0.57  Score=45.05  Aligned_cols=203  Identities=13%  Similarity=0.143  Sum_probs=110.7

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHHHh---hhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFFKN---FTT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL  158 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~~~---~~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail  158 (351)
                      .+-+....+--|..|+|+|.+-....   +|+   ...-|+.|++.++.     .|..+.      .+  ....=| ++=
T Consensus        59 WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAl-----Iy~~~n------~~--~~~~~GW~IP  125 (383)
T PRK14854         59 WINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSL-----IYLSIN------HD--IKVINGWAIP  125 (383)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHH-----HHHhhc------cC--CcccCccccc
Confidence            34445555566788999887654322   222   12235556555543     344442      11  111122 456


Q ss_pred             ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG  235 (351)
Q Consensus       159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G  235 (351)
                      ++||.+-...++.-.  +.| .++..+.+-++.||..+++.-.++..   ++.+.   ....       ....      .
T Consensus       126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~L~-------~A~~------~  186 (383)
T PRK14854        126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KSLSL---LSLS-------LGTL------F  186 (383)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CCccH---HHHH-------HHHH------H
Confidence            889999999988754  466 68999999999999999887655542   22221   1110       0000      1


Q ss_pred             HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHHHHH
Q 043481          236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATISFIA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (351)
                      ...-+..+|.   ++.+..  ...+......++.-..-|.++-+|-++.|+.+..+.++.  ++..++.++..+.....+
T Consensus       187 ~~~l~~~nr~---~~v~~~--~~Y~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~--~~pl~rleh~L~p~v~~~  259 (383)
T PRK14854        187 ILAMIICNRI---FKINRS--SVYVVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDK--DSPANFMEDSLHPWIIYF  259 (383)
T ss_pred             HHHHHHHHHh---cCCcee--hHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC--CCHHHHHHHHhhchHHHh
Confidence            1111223322   133332  223445567788888899999999999999998643322  122244444444443334


Q ss_pred             HHHHHHH--hhhhc
Q 043481          316 ETFIFLY--VFMDA  327 (351)
Q Consensus       316 ~~~~Fv~--vG~~~  327 (351)
                      -.-+|.+  .|..+
T Consensus       260 IlPlFA~aNAGV~l  273 (383)
T PRK14854        260 ILPVFAFANAGISF  273 (383)
T ss_pred             hHHHHHhhcCCeee
Confidence            4444444  35444

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=95.29  E-value=2.7  Score=39.68  Aligned_cols=152  Identities=15%  Similarity=0.106  Sum_probs=85.6

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT  166 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v  166 (351)
                      ....++..++|.-|++++.+++++..+.-... ..+...++.+.-..++.+...     .+.+.-+..|-++-++-|..+
T Consensus        39 ~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~~~~~~-----~~l~~~l~~Gl~ll~~~Pggv  112 (319)
T COG0385          39 AIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLALLLAKL-----FPLPPELAVGLLLLGCCPGGV  112 (319)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHhHHheeeCCCch
Confidence            45788999999999999999998776554432 224555665555555544322     235566777877777777666


Q ss_pred             HHHhccCCCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          167 LQVLSQDETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKTL  245 (351)
Q Consensus       167 ~~il~~~~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~~  245 (351)
                      .+..-..-.+ ++.- -.++...+..++....=....+..++....+.++...+.+.+.+.-+.+|.++-.......++.
T Consensus       113 ~S~~~t~lAkGnVal-sV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~  191 (319)
T COG0385         113 ASNAMTYLAKGNVAL-SVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKWVERL  191 (319)
T ss_pred             hHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6633211111 1111 1123445555665544333333222222223445566666666666666666665555444443

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=95.27  E-value=3.1  Score=40.30  Aligned_cols=79  Identities=14%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             HHHHHHHHhh------cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHh
Q 043481           38 CIIIGHLIEE------NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKN  111 (351)
Q Consensus        38 ~~~~~~~l~~------~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~  111 (351)
                      ..++|+++|+      |..+|+++.-=+.+.++.+........    ..++|.+ +.+..+....-..|+.-+.+.+||-
T Consensus        15 lLliG~~Lr~ki~~lqk~~IPasvIgGli~~il~~~l~~~~~~----~~~f~~~-l~~~lm~~fF~~igL~~~~~~lkkg   89 (368)
T PF03616_consen   15 LLLIGKFLRAKIPFLQKLFIPASVIGGLIFAILPLILGGFGGI----SISFDTS-LQDFLMIIFFTTIGLGASLKLLKKG   89 (368)
T ss_pred             HHHHHHHHHHHhHHHHHccCCchHHHHHHHHHHHHHHHhcCce----EEEechh-HHHHHHHHHHHHHhhccchhhHHhh
Confidence            3344555653      345899864444444444443322111    1334433 3333222222235888899999998


Q ss_pred             hhHHHHHHHH
Q 043481          112 FTTMLLFGIC  121 (351)
Q Consensus       112 ~~~i~~la~~  121 (351)
                      ++++......
T Consensus        90 g~~~~~~~~~   99 (368)
T PF03616_consen   90 GKAVLIFLLI   99 (368)
T ss_pred             HHHHHHHHHH
Confidence            8877664443

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>COG2855 Predicted membrane protein [Function unknown]

Probab=95.18  E-value=0.4  Score=45.26  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481           36 CACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT  114 (351)
Q Consensus        36 ~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~  114 (351)
                      +.+..+++.... ...+|+.+..++.|+++|....  .+++...-.++..+.+.++++    -.-|++++++++.+...+
T Consensus        21 ~~a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~--~~~~~~~GI~fs~k~LLr~gI----vLlG~~ltl~~i~~~G~~   94 (334)
T COG2855          21 GLAMLLGAFFFSIHLGLSALTLAILLGILLGILPQ--IPAQTSAGITFSSKKLLRLGI----VLLGFRLTLSDIADVGGS   94 (334)
T ss_pred             HHHHHHhchHHhhhcCchHHHHHHHHHHHHhcccc--chhhhccchhhhHHHHHHHHH----HHHcceeeHHHHHHcCcc
Confidence            334444444432 3348899999999999994322  122222335556666666665    445899999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhc
Q 043481          115 MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLS  171 (351)
Q Consensus       115 i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~  171 (351)
                      .+......+..+....-++.. .+      +.|+..+++.|   ++..+...+++.++.|
T Consensus        95 ~v~~~~~~l~~t~~~~~~lg~-~l------gld~~~a~Lia~GssICGasAiaA~~pvik  147 (334)
T COG2855          95 GVLIIAITLSSTFLFAYFLGK-LL------GLDKKLALLIAAGSSICGASAIAATAPVIK  147 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHccchhhHHHHHHHhCCcCC
Confidence            777555443333322222223 23      78999999998   4555555566656665

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=95.04  E-value=0.53  Score=40.92  Aligned_cols=145  Identities=14%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHH
Q 043481           90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQV  169 (351)
Q Consensus        90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~i  169 (351)
                      +.+..++|..|+++|.+++|+..|+.-. -..+.+......-..++.+...    -++.......|.++.+..|....+-
T Consensus         2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~-l~~~l~~~~~i~Plla~~l~~~----~~~~~~~~~~Gl~l~~~~P~~~~s~   76 (187)
T PF01758_consen    2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL-LLIGLLAQFLIMPLLAFGLAWL----LLPLSPALALGLLLVAACPGGPASN   76 (187)
T ss_dssp             -HHHHHHHHHHHC--GGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHH-H----HTT--HHHHHHHHHHHHS-B-THHH
T ss_pred             hhhhHHHHHhhhcccHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHH----HhcCCHHHHHHHHHHhcCCcHHHHH
Confidence            3467789999999999999977665333 2223444555554444443211    1244445666655555555433332


Q ss_pred             hc-c--CCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          170 LS-Q--DETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIK  243 (351)
Q Consensus       170 l~-~--~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~  243 (351)
                      .. +  .|...+.   .+-..+|...+....=....+..+.....+ .....+...+....+++=.+.|...++..+
T Consensus        77 ~~t~l~~Gd~~ls---~~lt~istll~~~~~P~~~~l~~~~~~~~~-~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p  149 (187)
T PF01758_consen   77 VFTYLAGGDVALS---VSLTLISTLLAPFLMPLLLYLLSGGSVDVD-SISPWDIIKSLLLIVILPLLLGMLLRKYLP  149 (187)
T ss_dssp             HHHHHTT--HHHH---HHHHHHHHHHHHHHHHHHHHHHH-GGGHHH----HHHHHHHHHHHTHHHHHHHHHHHHHHG
T ss_pred             HHHHHhCCCcccc---cceeeHHHHHHHHHHHHHHHHHhccccCCc-hhhHHHHHHHHHheehHHHhHHHHHHHHhh
Confidence            22 2  2222222   223455555555544333333222211222 111223333344444445555555555444

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional

Probab=94.82  E-value=0.89  Score=44.64  Aligned_cols=168  Identities=16%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHHHhh---hH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhc
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFFKNF---TT---MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AIL  158 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~---i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ail  158 (351)
                      .+-+....+--|..|+|++.+-..-..   |+   ...-|+.|++.++.     .|+.+.. +-   +   . .=| ++=
T Consensus        71 wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~-~~---~---~-~~GWgIP  137 (438)
T PRK14856         71 WIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNA-DT---P---S-QHGFGIP  137 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheec-CC---C---c-cCccccc
Confidence            344455666668889999877553221   11   12225555555542     3444421 10   0   0 112 456


Q ss_pred             ccccHHHHHHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          159 SATDSVCTLQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG  235 (351)
Q Consensus       159 saTdp~~v~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G  235 (351)
                      ++||.+-+..++.-.  +.| .++.-+.+-++.||.-++++-.++..   ++.+.   ....             ..+.+
T Consensus       138 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i~~---~~L~-------------~a~~~  198 (438)
T PRK14856        138 MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TNLKF---AWLL-------------GALGV  198 (438)
T ss_pred             cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CCCcH---HHHH-------------HHHHH
Confidence            899999999988644  467 69999999999999999987665542   12221   1111             11111


Q ss_pred             HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhc
Q 043481          236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHY  291 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~  291 (351)
                      ...-+..+|.    +.+..  ...+......++.-..-|.++-+|.++.|+.+..+
T Consensus       199 ~~~l~~ln~~----~v~~~--~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~  248 (438)
T PRK14856        199 VLVLAVLNRL----NVRSL--IPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVK  248 (438)
T ss_pred             HHHHHHHHHc----CCccc--cHHHHHHHHHHHHHHHccCcHHHHHHHHHheeecc
Confidence            2223344433    22222  23333556777888889999999999999999753

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.76  E-value=1.2  Score=46.16  Aligned_cols=101  Identities=12%  Similarity=0.118  Sum_probs=62.0

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT  166 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v  166 (351)
                      +..+++|+.-...|+++|++.+.++++.++.+.....+.-.......+.+ +      ++++.+++.+|..+++......
T Consensus       266 f~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~-~------g~~~~~al~~g~~L~~~Gef~~  338 (601)
T PRK03659        266 FKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARL-Y------GLRSSERMQFAGVLSQGGEFAF  338 (601)
T ss_pred             HHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHHHHHHHHHHHhccccHHH
Confidence            66788888888889999999998887766554444444444333333322 2      7899999999999988776443


Q ss_pred             H--HHhccCC-Cc-chhHhhhhhhhhhhHHHH
Q 043481          167 L--QVLSQDE-TP-FLYSIVFGEGVVNDATSI  194 (351)
Q Consensus       167 ~--~il~~~~-~~-~l~~ll~ges~~nD~~~i  194 (351)
                      +  +.-.+.+ .+ +..+.+.....+.-.++-
T Consensus       339 vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP  370 (601)
T PRK03659        339 VLFSAASSQRLLQGDQMALLLVVVTLSMMTTP  370 (601)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            2  2223344 23 454444444444433333

>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species

Probab=94.69  E-value=4.6  Score=39.30  Aligned_cols=86  Identities=20%  Similarity=0.282  Sum_probs=58.1

Q ss_pred             CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHH
Q 043481           49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFY  128 (351)
Q Consensus        49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~  128 (351)
                      +++|.++...+.|+++...... +++..++..    +.+.+..+|.-++.-=++.|.|+++|..++.+. ++....++.+
T Consensus        23 ~~l~~~vl~~~~~~~lsnlgli-~~p~~s~~y----~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~-~F~~~~~g~v   96 (378)
T PF05684_consen   23 KYLPGAVLCYLLGMLLSNLGLI-DSPASSPVY----DFVWTYLVPLAIPLLLLSADLRRILRLGGRLLL-AFLIGAVGTV   96 (378)
T ss_pred             hhcCHHHHHHHHHHHHHHCCCc-CCCCcchHH----HHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHH-HHHHHHHHHH
Confidence            4689999999999999875432 222222222    457778888888888889999999999888665 3333344445


Q ss_pred             HHHHHHHHHHhh
Q 043481          129 LISVGAFSIFKK  140 (351)
Q Consensus       129 ~~~~~~~~~~~~  140 (351)
                      +.+.+.+++++.
T Consensus        97 iG~~va~~l~~~  108 (378)
T PF05684_consen   97 IGAVVAFLLFGG  108 (378)
T ss_pred             HHHHHHHHHHhh
Confidence            555566666653

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=94.62  E-value=4.6  Score=39.03  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=44.2

Q ss_pred             HHHHHHHHhhc------CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhH-hhhcCCHHHHHH
Q 043481           38 CIIIGHLIEEN------RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFN-AGFQVKKKQFFK  110 (351)
Q Consensus        38 ~~~~~~~l~~~------~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~-~gl~l~~~~l~~  110 (351)
                      ..++|+.++||      ..+|+++.-=+...++++..+.....+    .++|. .+-+. +..+.|. .|+.-|.+.+||
T Consensus        17 llllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~----~~fd~-~l~~~-fmliFFttiglsa~~~~lkk   90 (404)
T COG0786          17 LLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVS----LNFDT-SLQDV-FMLIFFATIGLSASFKLLKK   90 (404)
T ss_pred             HHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEE----EeCCc-ccccH-HHHHHHHHhccccchhHHHh
Confidence            34456666542      348999766555566666554322111    12221 01112 2223344 599999999999


Q ss_pred             hhhHHHHHHHHH
Q 043481          111 NFTTMLLFGICG  122 (351)
Q Consensus       111 ~~~~i~~la~~g  122 (351)
                      -+++........
T Consensus        91 gGk~l~if~~~a  102 (404)
T COG0786          91 GGKKLAIFLATA  102 (404)
T ss_pred             cChhHHHHHHHH
Confidence            999877754443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.50  E-value=1.3  Score=45.97  Aligned_cols=92  Identities=10%  Similarity=0.049  Sum_probs=57.6

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHH-
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVC-  165 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~-  165 (351)
                      +..+++|+.-...|+++|++.+.++++.++.+....++.-.+.....+.+ +      ++++.+++.+|..+++-.... 
T Consensus       269 f~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~-~------g~~~~~a~~~gl~L~~~Gef~~  341 (621)
T PRK03562        269 FKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARP-L------GVPRKQRRWFAVLLGQGGEFAF  341 (621)
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------CCCHhHHHHHHHHHhccccHHH
Confidence            56677877777789999999998887766554444444444333333332 2      789999999999998765532 


Q ss_pred             -HHHHhccCC-Cc-chhHhhhhh
Q 043481          166 -TLQVLSQDE-TP-FLYSIVFGE  185 (351)
Q Consensus       166 -v~~il~~~~-~~-~l~~ll~ge  185 (351)
                       +..+-.+.+ .+ +..+.+...
T Consensus       342 vl~~~a~~~~~i~~~~~~~lv~~  364 (621)
T PRK03562        342 VVFGAAQMANVLEPEWAKLLTLA  364 (621)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHH
Confidence             223334444 23 454444433

>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments

Probab=93.78  E-value=0.36  Score=42.26  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCC-----HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 043481           56 TALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVK-----KKQFFKNFTTMLLFGICGTVISFYLI  130 (351)
Q Consensus        56 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~-----~~~l~~~~~~i~~la~~g~~~~~~~~  130 (351)
                      ..++.|+++|.....-        .+. ++...+..|-.++|..|.++.     ++++|+..++.+.+.+.. ++..+..
T Consensus         3 ~~li~Gi~lG~~~~~~--------~~~-~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~t-IlGSllg   72 (191)
T PF03956_consen    3 IALILGILLGYFLRPP--------FSL-IDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLAT-ILGSLLG   72 (191)
T ss_pred             eeHHHHHHHHHHhccc--------ccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHH-HHHHHHH
Confidence            4567888888764321        111 134788889999999999874     345666667877766654 4555566


Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHhhhhcc
Q 043481          131 SVGAFSIFKKMGMTSLRIQDFLAIGAILS  159 (351)
Q Consensus       131 ~~~~~~~~~~~g~~~~~~~~alllGails  159 (351)
                      +.....++      ++|+.+++.+|+=..
T Consensus        73 g~l~~~ll------~~~~~~~lav~sG~G   95 (191)
T PF03956_consen   73 GLLASLLL------GLSLKESLAVASGFG   95 (191)
T ss_pred             HHHHHHHh------cCCHHHHHHHHccCc
Confidence            66666665      789999998886553

Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.

>TIGR00808 malonate_madM malonate transporter, MadM subunit

Probab=93.74  E-value=2.3  Score=37.23  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=60.3

Q ss_pred             HHHHHHHHhh---cCccchHHHHHHHHHHHHHHHHhhccCCCcccccc---------ChhHHHHhhhHHHhhHhhhcCCH
Q 043481           38 CIIIGHLIEE---NRWANESITALLLGLCAGGVVLLASKDRSSHLLVF---------NEDLFFLYLLPPIIFNAGFQVKK  105 (351)
Q Consensus        38 ~~~~~~~l~~---~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~---------~~~~~~~i~L~~ilF~~gl~l~~  105 (351)
                      ....++++.|   +.|+|.+...++.|+++..........+- .+.++         ....+++++    +...+++.|.
T Consensus        24 ~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~k-GlaDi~lfsGiglmGGaMlRDfA----IvaTAf~v~~   98 (254)
T TIGR00808        24 MMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEK-GLADIAIFGGFGLMGGAMLRDLA----IVATAFEVDV   98 (254)
T ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCcc-ccchhhhhcchhhhhhHHHHHHH----HHHHhhcCcH
Confidence            3334555543   35799999999999999987543222111 11111         112233333    3677999999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          106 KQFFKNFTTMLLFGICGTVISFYLISVGAFS  136 (351)
Q Consensus       106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~  136 (351)
                      ++.||....-..-.+.|+++++...+.+++.
T Consensus        99 ~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~a  129 (254)
T TIGR00808        99 KEVKKAGKVGMVALLLGCVIPFVIGAMVAWA  129 (254)
T ss_pred             HHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999887777778888887665555543

The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=93.67  E-value=1.4  Score=37.78  Aligned_cols=111  Identities=15%  Similarity=0.126  Sum_probs=69.5

Q ss_pred             CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHH
Q 043481           49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVI  125 (351)
Q Consensus        49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~  125 (351)
                      .++-...+.++.|+++|......+...+   .. -++.+.++.+.+-++..|++--.+   .+||+..+...+++.-+.+
T Consensus        21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~---~~-~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~   96 (169)
T PF06826_consen   21 FSLGAAGGVLFVGLILGALGRTGPIFLP---IS-APSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLV   96 (169)
T ss_pred             eeccccHHHHHHHHHHHHhhhccCCCCC---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            3456667889999999986532111111   11 235688899999999999987754   5667777777777777777


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc-ccHHHHHHHhc
Q 043481          126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA-TDSVCTLQVLS  171 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa-Tdp~~v~~il~  171 (351)
                      +..+.....++++      ++|.  ....|.+-.+ |+|.......+
T Consensus        97 ~~~~~~~~~~~~~------~l~~--~~~~G~~aGa~T~tp~L~~A~~  135 (169)
T PF06826_consen   97 PLLIALVIGRYLF------KLNP--GIAAGILAGALTSTPALAAAQE  135 (169)
T ss_pred             HHHHHHHHHHHHc------CCCH--HHHHHHHHccccCcHHHHHHHH
Confidence            7665555555554      4553  3555655533 55555444433

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.03  E-value=4.4  Score=41.53  Aligned_cols=105  Identities=11%  Similarity=0.006  Sum_probs=59.3

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT  166 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v  166 (351)
                      +..+++|+.-...|+++|++.+.+++..+..+.....+.-......... .+      +.++.+++..|..+++......
T Consensus       277 ~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~~~~-~~------g~~~~~a~~~gl~l~~~Gef~l  349 (558)
T PRK10669        277 LRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFFLVR-LF------GHSRRTALTIAASLAQIGEFAF  349 (558)
T ss_pred             HHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCChhhHHHHHHHHhcccchHH
Confidence            4567777777778999999999877654433322222222222222222 22      7799999999999987666333


Q ss_pred             H--HHhccCC-Cc-chhHhhhhhhhhhhHHHHHHHH
Q 043481          167 L--QVLSQDE-TP-FLYSIVFGEGVVNDATSIVLFN  198 (351)
Q Consensus       167 ~--~il~~~~-~~-~l~~ll~ges~~nD~~~iil~~  198 (351)
                      .  .+-.+.+ .+ +....+...+.+.-.++=.++.
T Consensus       350 ii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~  385 (558)
T PRK10669        350 ILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFT  385 (558)
T ss_pred             HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2  2223444 23 4554554444444444444433

>COG2431 Predicted membrane protein [Function unknown]

Probab=92.69  E-value=1  Score=41.22  Aligned_cols=90  Identities=20%  Similarity=0.121  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCC---HHHHHHh-hhHHHHHHHHHHHHHHH
Q 043481           53 ESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVK---KKQFFKN-FTTMLLFGICGTVISFY  128 (351)
Q Consensus        53 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~---~~~l~~~-~~~i~~la~~g~~~~~~  128 (351)
                      ..++..+.|+++|.......        + +++.-.+..|-.++|..|.++.   ....++. -|+.+.+++. ++++..
T Consensus       108 k~~~~vl~g~~~G~l~~~~~--------~-~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i-~ilssl  177 (297)
T COG2431         108 KLLGVVLLGLALGLLTGSFL--------N-FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFI-TLLSSL  177 (297)
T ss_pred             HHHHHHHHHHHHHHHhcccc--------c-CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHH-HHHHHH
Confidence            45667788888887654221        1 2345678888999999999887   2222221 1344454554 566777


Q ss_pred             HHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481          129 LISVGAFSIFKKMGMTSLRIQDFLAIGAIL  158 (351)
Q Consensus       129 ~~~~~~~~~~~~~g~~~~~~~~alllGail  158 (351)
                      ..|....+++      ++|+.+++.+++=.
T Consensus       178 iGG~iaa~~l------~lpl~~~lAmasG~  201 (297)
T COG2431         178 IGGLIAAFLL------DLPLTTGLAMASGF  201 (297)
T ss_pred             HHHHHHHHHH------hccHHHHHHHHhcc
Confidence            7777777776      78988888776544

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=92.44  E-value=2.1  Score=46.02  Aligned_cols=72  Identities=14%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHH
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNF--TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSV  164 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~--~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~  164 (351)
                      ...+++|+.....|+++|.+.+....  .....+.+...+.-.......+. .+      ++|+.+++.+|.++++-.-.
T Consensus       323 ~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~-~~------g~~~~eal~lG~lm~~kG~~  395 (832)
T PLN03159        323 VSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAF-FY------TMPFREGITLGFLMNTKGLV  395 (832)
T ss_pred             HHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh------CCCHHHHHHHHHHHhcccHH
Confidence            35677888888899999998885432  11122222222222222222222 22      78999999999999886643


Q ss_pred             H
Q 043481          165 C  165 (351)
Q Consensus       165 ~  165 (351)
                      .
T Consensus       396 ~  396 (832)
T PLN03159        396 E  396 (832)
T ss_pred             H
Confidence            3

>TIGR00841 bass bile acid transporter

Probab=91.37  E-value=12  Score=34.78  Aligned_cols=69  Identities=19%  Similarity=0.322  Sum_probs=38.8

Q ss_pred             hHHHhhHhhhcCCHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHH
Q 043481           92 LPPIIFNAGFQVKKKQFFKNFTT--MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQ  168 (351)
Q Consensus        92 L~~ilF~~gl~l~~~~l~~~~~~--i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~  168 (351)
                      +..++|..|.+++.+++++..++  ....++   +......-..++.+...++   .  ......|.++.+.-|..+.+
T Consensus        14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~---~~~~vi~Plla~~l~~~~~---l--~~~~~~glvL~~~~P~~~~s   84 (286)
T TIGR00841        14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGL---LAQYGIMPLTGFLLAKVFK---L--PPELAVGVLIVGCCPGGTAS   84 (286)
T ss_pred             HHHHHHHccCCCcHHHHHHHHhCchHHHHHH---HHHHHHHHHHHHHHHHHhC---C--CHHHHHHHHheeeCCCchHH
Confidence            78889999999999999887663  222222   2233333333333322222   2  24456666665555544444

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=91.06  E-value=3.1  Score=40.78  Aligned_cols=99  Identities=17%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             CccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHH-hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHH
Q 043481           49 RWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFL-YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISF  127 (351)
Q Consensus        49 ~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~-i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~  127 (351)
                      .+++..++..++|+++.-.-.      ..+..+-+-+.+.+ +++|+--...|+++|++.+.+++..+..+....+..-.
T Consensus       241 ~gls~ilGAFlaGl~ls~~~~------~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~  314 (397)
T COG0475         241 LGLSMILGAFLAGLLLSESEY------RKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKI  314 (397)
T ss_pred             hChhHHHHHHHHHHHhccccc------chHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHH
Confidence            345666666666665543211      00011112245778 88888888899999999999998885554444333333


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc
Q 043481          128 YLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA  160 (351)
Q Consensus       128 ~~~~~~~~~~~~~~g~~~~~~~~alllGailsa  160 (351)
                      ......+. ..      +++...+...|...++
T Consensus       315 ~~~~~~~~-~~------g~~~~~~~~~g~~~~~  340 (397)
T COG0475         315 LGAYLAAR-LL------GFSKRLALGIGLLLRQ  340 (397)
T ss_pred             HHHHHHHH-HH------cCcHHHHHHHHhhhhh
Confidence            22222222 22      5666777777666554

>COG3493 CitS Na+/citrate symporter [Energy production and conversion]

Probab=90.78  E-value=5.9  Score=38.07  Aligned_cols=138  Identities=13%  Similarity=0.121  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCHHHHH
Q 043481           31 FFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKKKQFF  109 (351)
Q Consensus        31 ~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~~~l~  109 (351)
                      -..+-+.....++++.|...+|.+...++.=..+=-..+..+++..+...+++ +.+..=..=++++..|.. .|+++.-
T Consensus       269 G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~-~F~sk~~t~~Lm~giGv~ytdl~ev~  347 (438)
T COG3493         269 GMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLS-QFFSKNLTWPLMAGIGVAYTDLNEVA  347 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHH-HHHHHhhHHHHHHhhhhccccHHHHH
Confidence            34445556667888888777887773333222221122222222111112221 344555566788999997 9999998


Q ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc---ccHHHHHHHhccCC
Q 043481          110 KNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA---TDSVCTLQVLSQDE  174 (351)
Q Consensus       110 ~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa---Tdp~~v~~il~~~~  174 (351)
                      +.......+-...+++.....+...-.++   |  -+|...|..=|.+.+.   |--+++.+--++++
T Consensus       348 ~alt~~~vii~~~vVl~~i~~~~f~grl~---~--~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~  410 (438)
T COG3493         348 AALTWQNVIIALSVVLGAILGGAFVGRLM---G--FYPVEAAITAGLCMANMGGTGDVAVLSAADRME  410 (438)
T ss_pred             HHhchhHHHHHHHHHHHHHHHHHHHHHHh---c--CCchHHHHHHhHHhcCCCCCCchHHhhhcchhc
Confidence            87655455444455555555544433333   2  3577777777777754   55566666666665

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=90.61  E-value=1.5  Score=41.19  Aligned_cols=88  Identities=17%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043481           56 TALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAF  135 (351)
Q Consensus        56 ~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~  135 (351)
                      .-++..+++|....+.+++.. +..  .+  =..+.+|+..|.-|.++|++++.+...+.+.+++..+..+...    .+
T Consensus       167 v~lilpILiGmilGNld~~~~-~~l--~~--Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~----~~  237 (312)
T PRK12460        167 VAALLPLVLGMILGNLDPDMR-KFL--TK--GGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF----NI  237 (312)
T ss_pred             HHHHHHHHHHHHHhccchhhH-HHH--hc--cceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH----HH
Confidence            335566666665544443111 000  11  1223778888999999999999999999888888766555433    23


Q ss_pred             HHHhhcCCCCCCHHHHHHhh
Q 043481          136 SIFKKMGMTSLRIQDFLAIG  155 (351)
Q Consensus       136 ~~~~~~g~~~~~~~~alllG  155 (351)
                      ++-+.+   +.+-..+.+.|
T Consensus       238 ~i~rll---g~~~~~g~li~  254 (312)
T PRK12460        238 FADRLV---GGTGIAGAAAS  254 (312)
T ss_pred             HHHHHh---CCChhHHHHHH
Confidence            333333   45666677777

>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=90.35  E-value=16  Score=34.50  Aligned_cols=197  Identities=17%  Similarity=0.203  Sum_probs=104.2

Q ss_pred             HHhhHhhhcCCHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhh-hhcccccHHHH
Q 043481           94 PIIFNAGFQVKKKQFFKNFTTML------LFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIG-AILSATDSVCT  166 (351)
Q Consensus        94 ~ilF~~gl~l~~~~l~~~~~~i~------~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllG-ailsaTdp~~v  166 (351)
                      +--+..|+|++++.+....++.-      .-|..|++.++.     .|..+.      .+-+. -.=| ++=++||.+-.
T Consensus        73 vFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAl-----iy~~~n------~~~p~-~~~GWaIP~ATDiAFA  140 (390)
T COG3004          73 VFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPAL-----IYLALN------AGDPA-TLEGWAIPMATDIAFA  140 (390)
T ss_pred             HHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhh-----Hhheee------cCChh-hhcCcCcccHHHHHHH
Confidence            33456799999887764333222      223444444432     233331      11111 1112 56689999999


Q ss_pred             HHHhccC--CCc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          167 LQVLSQD--ETP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIK  243 (351)
Q Consensus       167 ~~il~~~--~~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~  243 (351)
                      ..++.-.  ++| .++.-+.+-+++||.-+++.-.++..   ++.+..   ..       ...    +.+..  .-..++
T Consensus       141 lGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt---~~Ls~~---al-------~~a----~~~i~--vL~~lN  201 (390)
T COG3004         141 LGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT---TDLSMA---AL-------GIA----ALAIA--VLAVLN  201 (390)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc---CCccHH---HH-------HHH----HHHHH--HHHHHH
Confidence            9998754  467 68989999999999999887766542   122211   10       011    11111  111223


Q ss_pred             HHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHH-HHHHHH-HHHH
Q 043481          244 TLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATI-SFIAET-FIFL  321 (351)
Q Consensus       244 ~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~Fv  321 (351)
                      ++    +.+..  ...+.+....+..-..-|.+.-+|.++.|++..-...+.  ++.-++.+|..+.. .++..| +-|.
T Consensus       202 ~~----~v~~l--~~Y~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~--~spl~~leh~L~pwvaf~IlPlFaFa  273 (390)
T COG3004         202 RL----GVRRL--SPYLLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEG--ESPLERLEHALHPWVAFFILPLFAFA  273 (390)
T ss_pred             Hh----Cchhh--hHHHHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCC--CCcHHHHHHHhhhhHHHHHHHHHHHc
Confidence            22    22222  223344445555556778888899999888877543322  23334445544443 443333 3345


Q ss_pred             Hhhhhccc
Q 043481          322 YVFMDALD  329 (351)
Q Consensus       322 ~vG~~~~~  329 (351)
                      =-|..+..
T Consensus       274 NAGvsl~g  281 (390)
T COG3004         274 NAGVSLQG  281 (390)
T ss_pred             cCCccccc
Confidence            55666543

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=90.30  E-value=9.9  Score=36.04  Aligned_cols=64  Identities=6%  Similarity=-0.132  Sum_probs=39.5

Q ss_pred             hhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481           84 EDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA  153 (351)
Q Consensus        84 ~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all  153 (351)
                      |+.+...+-..+=...|.++|.+.+|+..+....  ......+......+...+.+.      ++|+.++++
T Consensus       202 P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~------~~~~~t~~L  267 (318)
T PF05145_consen  202 PPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSRLT------GIDFLTALL  267 (318)
T ss_pred             CHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence            4567888888888889999998887776654332  122223333334444444433      778877665

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00832 acr3 arsenical-resistance protein

Probab=90.18  E-value=17  Score=34.54  Aligned_cols=99  Identities=14%  Similarity=0.066  Sum_probs=51.4

Q ss_pred             hhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHH
Q 043481           90 YLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQV  169 (351)
Q Consensus        90 i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~i  169 (351)
                      +.+.+++|.-|++++.+++||..++.-. -..+........-..++.+...+    ++....+..|-++-+.-|..+.+.
T Consensus        47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Plla~~l~~l~----~~~~p~l~~GliLv~~~Pgg~~S~  121 (328)
T TIGR00832        47 IGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFLMFLLAWLF----LRDLFEYIAGLILLGLARCIAMVF  121 (328)
T ss_pred             HHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHHH----cCCCHHHHHHHHHHHhcchHHHHH
Confidence            3455789999999999999887665333 22244445555544444332211    022233556655555555444443


Q ss_pred             h----ccCCCcchhHhhhhhhhhhhHHHHHHH
Q 043481          170 L----SQDETPFLYSIVFGEGVVNDATSIVLF  197 (351)
Q Consensus       170 l----~~~~~~~l~~ll~ges~~nD~~~iil~  197 (351)
                      .    .+.+.+ +...+   ...|...+.++.
T Consensus       122 v~T~lAkGnva-lsv~l---t~~stLl~~~~~  149 (328)
T TIGR00832       122 VWNQLAKGDPE-YTLVL---VAVNSLFQVFLY  149 (328)
T ss_pred             HHHHHcCCCHH-HHHHH---HHHHHHHHHHHH
Confidence            3    222222 22222   356666665554

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=90.16  E-value=17  Score=34.48  Aligned_cols=178  Identities=13%  Similarity=0.091  Sum_probs=91.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhccCCCc-cccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhh---hHHHHHHHHHHHHHH
Q 043481           52 NESITALLLGLCAGGVVLLASKDRSS-HLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNF---TTMLLFGICGTVISF  127 (351)
Q Consensus        52 P~~~~~ll~GillG~~~~~~~~~~~~-~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~---~~i~~la~~g~~~~~  127 (351)
                      +-+...+..|+.+|.......+..+. +...  -+.-..+.+...++--=.++|++++++..   |.....-+...++..
T Consensus        18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~--~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P   95 (342)
T COG0798          18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGG--VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGP   95 (342)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhcccceeCc--eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            34666777888888754432211110 1111  13345566777777777899999887554   444444455555555


Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHh-ccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhcc
Q 043481          128 YLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVL-SQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFN  206 (351)
Q Consensus       128 ~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il-~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~  206 (351)
                      +.....++..++     +.|   .+..|.++-.-.|-..+.+. .+. ++--++.-..--.+||...+++|.....+.-+
T Consensus        96 ~lm~~la~~fl~-----~~p---ey~~GlILlglApC~aMVivw~~L-a~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~  166 (342)
T COG0798          96 LLMFALAWFFLP-----DEP---EYRAGLILLGLAPCIAMVIVWSGL-AKGDRELTLVLVAFNSLLQIVLYAPLGKFFLG  166 (342)
T ss_pred             HHHHHHHHHHhC-----CCH---HHHHHHHHHHhhhhHHHHHHHHhh-ccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            554444444431     334   55666666555554443333 221 11011222234569999999998755443222


Q ss_pred             -CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          207 -NIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYIIKT  244 (351)
Q Consensus       207 -~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~~~  244 (351)
                       .....++...+.+.+..    +.+=...|.+.++...|
T Consensus       167 v~~~~v~~~~i~~Sv~ly----l~iPli~G~lTR~i~~k  201 (342)
T COG0798         167 VISISVPFWTIAKSVLLY----LGIPLIAGVLTRYILIK  201 (342)
T ss_pred             hccccccHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence             11122344444443333    33344555666665554

>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate

Probab=90.05  E-value=15  Score=35.50  Aligned_cols=92  Identities=13%  Similarity=0.056  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhh
Q 043481           35 LCACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFT  113 (351)
Q Consensus        35 l~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~  113 (351)
                      +..+..+++++++ ...+|.-+..++.|+++-.........+   +-+-.-+.+..+++-+.+..+=..+|...+.++..
T Consensus       230 ~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~---id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~  306 (368)
T PF03616_consen  230 IGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK---IDRKTIDRISGISLDLFLAMALMSLKLWVLADYAL  306 (368)
T ss_pred             HHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc---CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3344444555554 3357988888888888877654332221   10001145777888888888888999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 043481          114 TMLLFGICGTVISFYL  129 (351)
Q Consensus       114 ~i~~la~~g~~~~~~~  129 (351)
                      +.+.+...+++++.+.
T Consensus       307 Plliil~~q~i~~~~f  322 (368)
T PF03616_consen  307 PLLIILAVQTILMVLF  322 (368)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9988777777766543

The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane

>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=89.84  E-value=0.61  Score=41.61  Aligned_cols=83  Identities=10%  Similarity=0.006  Sum_probs=67.2

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHH
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVC  165 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~  165 (351)
                      .+..+.+-++.-+.|++++.|.+++.......+.+......+-..+...++..      +.+|.++++.|.+..+..+..
T Consensus       158 ~l~t~a~~I~~ik~gLgt~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l------~~~ii~~~l~g~v~~~i~~~~  231 (252)
T KOG3826|consen  158 PLRTVALTIIKIKAGLGTLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLL------AGPIIWAFLLGIVIGSILWRF  231 (252)
T ss_pred             hhhhccchHHHHHhhhcccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHh------ccchHHHhccccceeeeecCC
Confidence            46778888899999999999999999998888888777777766666667665      789999999999999988876


Q ss_pred             HHHHhccCC
Q 043481          166 TLQVLSQDE  174 (351)
Q Consensus       166 v~~il~~~~  174 (351)
                      .-+-....+
T Consensus       232 ~r~~~~h~~  240 (252)
T KOG3826|consen  232 PRPDYQHTQ  240 (252)
T ss_pred             ccccchhhc
Confidence            655544333

>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom

Probab=88.73  E-value=11  Score=36.93  Aligned_cols=141  Identities=15%  Similarity=0.160  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCH
Q 043481           27 ALSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKK  105 (351)
Q Consensus        27 ~l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~  105 (351)
                      ++-.-..+.+....++.++++...+|+...+++.-+++=.. ...+++..+...+ -.+.+..-..+++++..|.. +|+
T Consensus       247 ~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~-~lvP~~~e~~a~~-~~~f~~~~lt~~lLvgiGv~~~~l  324 (414)
T PF03390_consen  247 DMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF-GLVPESLEEGAKQ-WYKFFSKNLTWPLLVGIGVAYTDL  324 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh-CcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCcH
Confidence            34444455556666788888877899998877655544322 2222211111111 12456677899999999998 999


Q ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc---cccHHHHHHHhccCC
Q 043481          106 KQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS---ATDSVCTLQVLSQDE  174 (351)
Q Consensus       106 ~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGails---aTdp~~v~~il~~~~  174 (351)
                      +++-+.......+-...+++.....+...-.++   |  =+|...|+.-|-+.+   .|-=+++.+.-++++
T Consensus       325 ~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~---g--~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~  391 (414)
T PF03390_consen  325 NDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLV---G--FYPVESAITAGLCMANMGGTGDVAVLSAANRME  391 (414)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh---C--CChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence            999998876665555555555555444333333   2  245555555552333   244445555556655

They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=88.63  E-value=13  Score=31.14  Aligned_cols=64  Identities=5%  Similarity=-0.144  Sum_probs=39.3

Q ss_pred             hhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481           84 EDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA  153 (351)
Q Consensus        84 ~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all  153 (351)
                      |+.+...+..++-...|.+++.+.+++..+....  .....++......+...+...      ++|+.++++
T Consensus        45 P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~------~~~~~ta~L  110 (156)
T TIGR03082        45 PPWLLALAQVVIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLT------GVDPLTAFL  110 (156)
T ss_pred             CHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHH
Confidence            4567888888888899999998877766554332  222222333333333333332      788888864

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=88.22  E-value=27  Score=34.19  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=17.8

Q ss_pred             cCcchHHHHHHHHHHhhhccc
Q 043481          273 LNLSGILTIFFCGIIMSHYTW  293 (351)
Q Consensus       273 ~g~Sgila~~v~Gl~~~~~~~  293 (351)
                      ......+.+++.|+.++|..+
T Consensus       243 ~~lP~fv~am~~giiirni~~  263 (398)
T TIGR00210       243 LMLPTFVWCLFVGVILRNPLS  263 (398)
T ss_pred             CCCCchHHHHHHHHHHHHHHH
Confidence            458889999999999998654

>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]

Probab=87.85  E-value=27  Score=33.88  Aligned_cols=151  Identities=15%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHH
Q 043481           37 ACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTM  115 (351)
Q Consensus        37 ~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i  115 (351)
                      .+..+.+++++ ...+|.-+..++.|+++-.........+   ..+-.-|.+.++.|-..+=.+=.++++-++-+..-+.
T Consensus       233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~---v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl  309 (404)
T COG0786         233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYR---VFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPL  309 (404)
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhcccc---ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccH
Confidence            33344444443 3358999999999999887665433222   1111225678888888888888899999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH----hh--hhcccccHHHHHHHhccCCCc-c--hhHhhhhhh
Q 043481          116 LLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA----IG--AILSATDSVCTLQVLSQDETP-F--LYSIVFGEG  186 (351)
Q Consensus       116 ~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all----lG--ailsaTdp~~v~~il~~~~~~-~--l~~ll~ges  186 (351)
                      +.+-.++++...+..-+   ..++.+|.   ++..+.+    .|  .=.+||.-+-..++-++.|.+ |  +-.=+.| +
T Consensus       310 ~viL~vQ~i~m~lfa~f---vtfr~mG~---~YdAaV~~~G~~G~gLGATPtAianM~av~~k~g~S~kAf~ivPiVG-A  382 (404)
T COG0786         310 LVILAVQTIVMALFAIF---VTFRLMGK---NYDAAVLAAGHCGFGLGATPTAIANMQAVTEKFGPSHKAFIVVPIVG-A  382 (404)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHhCc---chhHHHHhcccccCccCCcHHHHHhhhcchhhcCCCceeeEEeehHH-H
Confidence            88777776555432222   23444443   4444444    22  333455555555565666765 3  2222455 7


Q ss_pred             hhhhHHHHHHH
Q 043481          187 VVNDATSIVLF  197 (351)
Q Consensus       187 ~~nD~~~iil~  197 (351)
                      .+-|.+....-
T Consensus       383 ffid~ina~ii  393 (404)
T COG0786         383 FFIDIINALII  393 (404)
T ss_pred             HHHHHHHHHHH
Confidence            77777774443

>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function

Probab=87.58  E-value=6.9  Score=36.95  Aligned_cols=139  Identities=18%  Similarity=0.173  Sum_probs=83.3

Q ss_pred             chHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcC--CHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481           52 NESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQV--KKKQFFKNFTTMLLFGICGTVISFYL  129 (351)
Q Consensus        52 P~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l--~~~~l~~~~~~i~~la~~g~~~~~~~  129 (351)
                      ...+.+++-|+++|.....   +....+-.+- +..+.-.|++.+.+-|+.-  +.+++||..+....+++..-++...+
T Consensus       177 ~~sv~LLlGgliIG~~~g~---~g~~~i~pf~-~~lF~G~L~lFLLeMGl~A~~rL~~l~~~g~~li~Fgi~~Pli~a~i  252 (327)
T PF05982_consen  177 NKSVVLLLGGLIIGFLAGP---EGVESIKPFF-VDLFKGVLCLFLLEMGLVAARRLRDLRKVGWFLIAFGILMPLINALI  252 (327)
T ss_pred             CchHHHHHHHHHHhheeCc---cchhhccchh-hccHHHHHHHHHHHhhHHHHHhhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            4567778888898875431   1111111111 1245566777888888754  46688999888888888777776655


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC---CcchhHh-hhhh-hhhhhHHHHHHHHHHH
Q 043481          130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE---TPFLYSI-VFGE-GVVNDATSIVLFNAIQ  201 (351)
Q Consensus       130 ~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~---~~~l~~l-l~ge-s~~nD~~~iil~~~~~  201 (351)
                      .....+++       +++.-.+.+++.+.++-|=.++-+.+|..-   .|.+.-. -.|- ==+|=.+++++|.-..
T Consensus       253 g~~lg~~~-------gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la  322 (327)
T PF05982_consen  253 GIGLGWLL-------GLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALA  322 (327)
T ss_pred             HHHHHHHh-------CCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHH
Confidence            44444443       778888999998887766666656665421   1112111 0111 1367777777776443

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=87.56  E-value=18  Score=32.44  Aligned_cols=98  Identities=17%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHH--hhHhhhcCCHH
Q 043481           29 SVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPI--IFNAGFQVKKK  106 (351)
Q Consensus        29 ~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~i--lF~~gl~l~~~  106 (351)
                      ++.+.+-+.+...++.+.||.+-|-.-..++.=+++-..+...+-  +.+..+-..+.+ ...|.+-  -+..-+.-+++
T Consensus         5 ~~~l~lTl~~y~~~~~l~~r~~~~~lnPvl~~~~~ii~~L~~~~i--~Y~~Y~~g~~~l-~~lLgPAtVALAvPLY~~~~   81 (226)
T TIGR00659         5 IVSLFLTLLVFFGAKKLYQRFKRPYLNPLLLTPLVLVGILLLVGI--PYESYMLGGGVI-NDLLGPAVVALAIPLYKQLP   81 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhCC--CHHHHHHhhHHH-HHhhHHHHHHHHHHHHHhHH
Confidence            344455555666777777655443322222222222222222111  111122123333 3333333  23334456789


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHH
Q 043481          107 QFFKNFTTMLLFGICGTVISFYL  129 (351)
Q Consensus       107 ~l~~~~~~i~~la~~g~~~~~~~  129 (351)
                      .+||++++++.-...|...+...
T Consensus        82 ~lk~~~~~Il~~~~~G~~~~~~s  104 (226)
T TIGR00659        82 QIKKYWKEIILNVAVGSVIAIIS  104 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888666666655433

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=86.87  E-value=5.7  Score=40.78  Aligned_cols=108  Identities=13%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481           50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS  126 (351)
Q Consensus        50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~  126 (351)
                      ++-.+.+.+++|+++|....           +++ +.+.++++.+-+|..|++.-++   .+||+..+...++++.++..
T Consensus        34 ~LG~~~gvLfvgl~~G~~g~-----------~i~-~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~~~  101 (562)
T TIGR03802        34 QLGGVAGSLIVAVLIGQLGI-----------QID-PGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAVSG  101 (562)
T ss_pred             ecchHHHHHHHHHHHHhcCC-----------CCC-hHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45556788999999996421           122 3477899999999999999965   45555555566665544433


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHHHHHhccCC
Q 043481          127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCTLQVLSQDE  174 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v~~il~~~~  174 (351)
                       +.+++.+.+++   |+ +.+....++=|+.-+...-++....+++.+
T Consensus       102 -~~~~~~~~~~~---g~-~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~  144 (562)
T TIGR03802       102 -LITVYALAKIF---GL-DKGTAAGLAAGGLTQSAVIGTAGDAIEKLG  144 (562)
T ss_pred             -HHHHHHHHHHh---CC-CHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence             34444445444   33 334555566666654444444444445444

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR00698 conserved hypothetical integral membrane protein

Probab=86.73  E-value=30  Score=33.07  Aligned_cols=112  Identities=15%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481           50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYL  129 (351)
Q Consensus        50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~  129 (351)
                      .+++.+..++.|++++.......++....-.++..+.+.++++    -.-|.+++++++.+..++.+......+..+...
T Consensus        30 ~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gI----VLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~  105 (335)
T TIGR00698        30 ALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGI----TLYGFRLTFPYIADVGPNEIVADTLILTSTFFL  105 (335)
T ss_pred             CCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHH----HHHCccccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4777777777777777632100111111112233334455544    456899999999999988877666554444332


Q ss_pred             HHHHHHHHH-hhcCCCCCCHHHHHHhh---hhcccccHHHHHHHhcc
Q 043481          130 ISVGAFSIF-KKMGMTSLRIQDFLAIG---AILSATDSVCTLQVLSQ  172 (351)
Q Consensus       130 ~~~~~~~~~-~~~g~~~~~~~~alllG---ailsaTdp~~v~~il~~  172 (351)
                      .    +++. +++   +.+...+.++|   ++..++..+++.++.|.
T Consensus       106 ~----~~~g~k~l---~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A  145 (335)
T TIGR00698       106 T----VFLGSSRL---KLDKQMSILLGAGSSICGAAAVAAIEPVIKA  145 (335)
T ss_pred             H----HHHHHHHh---CCChhHHHHHHcchhHHHHHHHHHhccccCC
Confidence            2    3333 233   66788888887   55566666666666654

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>TIGR00210 gltS sodium--glutamate symport carrier (gltS)

Probab=86.67  E-value=34  Score=33.57  Aligned_cols=158  Identities=10%  Similarity=-0.010  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhh-cCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481           36 CACIIIGHLIEE-NRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT  114 (351)
Q Consensus        36 ~~~~~~~~~l~~-~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~  114 (351)
                      ..+..+.+.+++ ...+|.-+..++.|+++-.........+.   .+-.-+.+..+.+-+.+-.+=..+|..++.+++.+
T Consensus       229 ~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~---~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~P  305 (398)
T TIGR00210       229 LVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWV---AERAVSVIGNVSLSLFLAIALMSLQLWELADLAGP  305 (398)
T ss_pred             HHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            334444444443 23589999999999999887654332221   11022457778888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH--HHHHHhhhhccc--ccHHHHHHHhccCCCc-chhHhh-hhhhhh
Q 043481          115 MLLFGICGTVISFYLISVGAFSIFKKMGMTSLRI--QDFLAIGAILSA--TDSVCTLQVLSQDETP-FLYSIV-FGEGVV  188 (351)
Q Consensus       115 i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~--~~alllGailsa--Tdp~~v~~il~~~~~~-~l~~ll-~ges~~  188 (351)
                      .+.+.+.+++++.+..-++.+   +.+|. +++-  ..|-..|--+.+  |.-+-.-++-++.|.+ |-.-++ .--+.+
T Consensus       306 lliil~~q~i~~~l~~~fv~f---r~mg~-~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~  381 (398)
T TIGR00210       306 IALILLVQVMFMALYAIFVTF---RLMGK-DYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFF  381 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhH---Hhccc-hHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHH
Confidence            999999999888754443333   33432 3221  112234545544  4445555677788854 411111 223556


Q ss_pred             hhHHHHHHHHHH
Q 043481          189 NDATSIVLFNAI  200 (351)
Q Consensus       189 nD~~~iil~~~~  200 (351)
                      -|..-.+.-+.+
T Consensus       382 id~~n~~~i~~f  393 (398)
T TIGR00210       382 IDIINALVIKQF  393 (398)
T ss_pred             HHHhhHHHHHHH
Confidence            666665554444

>PRK03818 putative transporter; Validated

Probab=85.57  E-value=7.3  Score=39.93  Aligned_cols=80  Identities=16%  Similarity=0.102  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHHHHHH
Q 043481           54 SITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVISFYLI  130 (351)
Q Consensus        54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~~~~~  130 (351)
                      ..+.++.|+++|......    ..++.+--.+.+.++++.+-+|..|++.-++   .+||+..+...++++.++...++ 
T Consensus        33 ~~g~L~~gl~~G~~~~~~----~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~-  107 (552)
T PRK03818         33 IGGVLFGGIIVGHFVSQF----GLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLV-  107 (552)
T ss_pred             cHHHHHHHHHHhcccccc----CcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHH-
Confidence            467788888888643211    1001000113477899999999999998855   55666666666676655555443 


Q ss_pred             HHHHHHHH
Q 043481          131 SVGAFSIF  138 (351)
Q Consensus       131 ~~~~~~~~  138 (351)
                      ++..++++
T Consensus       108 ~~~~~~~~  115 (552)
T PRK03818        108 TAILHKLF  115 (552)
T ss_pred             HHHHHHHh
Confidence            55556655

>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter

Probab=84.99  E-value=26  Score=36.06  Aligned_cols=108  Identities=19%  Similarity=0.136  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHHhhccCCCccccccCh---hHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481           53 ESITALLLGLCAGGVVLLASKDRSSHLLVFNE---DLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS  126 (351)
Q Consensus        53 ~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~  126 (351)
                      ...+.++.|+++|...... +.    ..++++   ..+.+++|.+-++..|++--.+   .+|++..+.+.++..-++++
T Consensus       417 ~~~g~l~~gl~~g~~~~~~-~~----~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~  491 (562)
T TIGR03802       417 TGGGALISGLVFGWLRSKH-PT----FGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP  491 (562)
T ss_pred             hhHHHHHHHHHHHHhcccC-Cc----ceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3456778888888753211 11    111222   2577888988888889887754   55677777777777777666


Q ss_pred             HHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhccc-ccHHHHHHHhccC
Q 043481          127 FYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSA-TDSVCTLQVLSQD  173 (351)
Q Consensus       127 ~~~~~~~~~~~~~~~g~~~~~~~~alllGailsa-Tdp~~v~~il~~~  173 (351)
                      .++.....++++      +++..  ...|.+-.+ |+|++.....+..
T Consensus       492 ~~~~~~~~~~~~------~~~~~--~~~G~~aG~~t~t~~l~~a~~~~  531 (562)
T TIGR03802       492 LIITMLIGKYVL------KYDPA--LLLGALAGARTATPALGAVLERA  531 (562)
T ss_pred             HHHHHHHHHHHh------CCCHH--HHHHHhhccCCCcHHHHHHHHhc
Confidence            666666666665      55544  667776644 7777765555433

All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).

>TIGR00783 ccs citrate carrier protein, CCS family

Probab=84.86  E-value=21  Score=34.26  Aligned_cols=139  Identities=12%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhc-CCHH
Q 043481           28 LSVFFTLLCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQ-VKKK  106 (351)
Q Consensus        28 l~i~~~ll~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~-l~~~  106 (351)
                      +-.-+.+.+....++.+++...++|+...+++.|+++-... .++++..+...+ -.+.+..-...+++...|+. .|++
T Consensus       181 ~g~Gl~~a~~~y~~g~l~~~~~~Ih~~v~mII~~vi~k~~g-llp~~i~~~a~~-~~~F~~~~lt~~ll~giGla~t~l~  258 (347)
T TIGR00783       181 MGSGVLFAVALFMAGGLLKSFPGIPAYAFMILIAAALKAFG-LVPKEIEEGAKM-LSQFISKNLTWPLMVGVGVSYIDLD  258 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHHHHHHHHHHHHHcccccCCHH
Confidence            33333444445555666664446899999998888876432 122111111111 11345556677888888986 8999


Q ss_pred             HHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc---cccHHHHHHHhccCC
Q 043481          107 QFFKNF-TTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS---ATDSVCTLQVLSQDE  174 (351)
Q Consensus       107 ~l~~~~-~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGails---aTdp~~v~~il~~~~  174 (351)
                      ++-+.. ++.+.+.+.++ +...+.+...-.++   |  -+|...|+.-|-+.+   .|-=+++.+.-++++
T Consensus       259 ~L~~a~t~~~vviiv~~V-lg~ii~s~lvGKll---G--~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~  324 (347)
T TIGR00783       259 DLVAALSWQFVVICLSVV-VAMILGGAFLGKLM---G--MYPVESAITAGLCNSGMGGTGDVAVLSASNRMN  324 (347)
T ss_pred             HHHHHhchhHhhhHHHHH-HHHHHHHHHHHHHh---C--CChHHHHHHHhhhccCCCCCCceeeeehhhhcc
Confidence            999988 55444444333 33333333322223   2  346666666563433   244444555555555

These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.

>TIGR00698 conserved hypothetical integral membrane protein

Probab=84.63  E-value=7.9  Score=36.97  Aligned_cols=41  Identities=15%  Similarity=0.096  Sum_probs=34.2

Q ss_pred             HHHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHH
Q 043481           86 LFFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVIS  126 (351)
Q Consensus        86 ~~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~  126 (351)
                      .+....+.+=++..|++.|++++||..++.+.++....+.-
T Consensus       280 ~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g~i~~~~l  320 (335)
T TIGR00698       280 PLDTFLLATAMAALGLTTNVSAVKKAGVKPLFASYAGYLWL  320 (335)
T ss_pred             HHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHHHHHHHHH
Confidence            46777888889999999999999999999998887765433

Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=84.24  E-value=27  Score=31.48  Aligned_cols=33  Identities=21%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             hHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHH
Q 043481           97 FNAGFQVKKKQFFKNFTTMLLFGICGTVISFYL  129 (351)
Q Consensus        97 F~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~  129 (351)
                      +..-+.-+++.+||++++++.=.+.|...+.+.
T Consensus        78 LAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s  110 (232)
T PRK04288         78 FAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLI  110 (232)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456678999999999888666666655433

>PRK04972 putative transporter; Provisional

Probab=82.95  E-value=19  Score=36.99  Aligned_cols=110  Identities=12%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             chHHHHHHHHHHHHHHHHhhccCCCccccccCh---hHHHHhhhHHHhhHhhhcCCH---HHHHHhhhHHHHHHHHHHHH
Q 043481           52 NESITALLLGLCAGGVVLLASKDRSSHLLVFNE---DLFFLYLLPPIIFNAGFQVKK---KQFFKNFTTMLLFGICGTVI  125 (351)
Q Consensus        52 P~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~---~~~~~i~L~~ilF~~gl~l~~---~~l~~~~~~i~~la~~g~~~  125 (351)
                      -...+.++.|+++|..-..-+ .    ...+++   ..+.++.|.+-+...|++--.   +.++++.++.+..+...+++
T Consensus       411 G~agG~L~~gl~~g~~~~~~~-~----~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~  485 (558)
T PRK04972        411 GNAAGLLFAGIMLGFLRANHP-T----FGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLV  485 (558)
T ss_pred             cccHHHHHHHHHHHhccccCC-C----ceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            335677888999987532111 1    111221   357788888888888887664   45677777888888877777


Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcc-cccHHHHHHHhccCC
Q 043481          126 SFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILS-ATDSVCTLQVLSQDE  174 (351)
Q Consensus       126 ~~~~~~~~~~~~~~~~g~~~~~~~~alllGails-aTdp~~v~~il~~~~  174 (351)
                      +.++..+..++++      ++++.  .+.|++-. -|+|++.....+..+
T Consensus       486 ~~~~~~~~~~~~~------k~~~~--~~~G~~aG~~t~~~~l~~~~~~~~  527 (558)
T PRK04972        486 PVVICFLFGAYVL------RMNRA--LLFGAIMGARTCAPAMEIISDTAR  527 (558)
T ss_pred             HHHHHHHHHHHHH------cCCHH--HHHHHHhCCCCCcHHHHHHHhhcC
Confidence            7777777777776      66665  67787764 488877766655544

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=82.28  E-value=37  Score=30.45  Aligned_cols=73  Identities=18%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             HhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc--ccccHHHHHHHhcc
Q 043481           95 IIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL--SATDSVCTLQVLSQ  172 (351)
Q Consensus        95 ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail--saTdp~~v~~il~~  172 (351)
                      .-|..-+.=+++.+||+|++++.-...|...........+.+    +   +.+-  .+ .-+++  |.|.|.+. .+-++
T Consensus        73 VAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~----~---g~~~--~~-~~Sl~PkSvTTpiAm-~vs~~  141 (230)
T COG1346          73 VALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKL----F---GLSP--EL-ILSLLPKSVTTPIAM-EVSES  141 (230)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---CCCH--HH-HHHhcccccccHHHH-HHHHh
Confidence            345556667899999999999886666665554433333332    2   3331  12 22222  55667665 55566


Q ss_pred             CC-Ccch
Q 043481          173 DE-TPFL  178 (351)
Q Consensus       173 ~~-~~~l  178 (351)
                      .| .|.+
T Consensus       142 iGGip~l  148 (230)
T COG1346         142 IGGIPAL  148 (230)
T ss_pred             cCCchHH
Confidence            54 5554

>PRK04972 putative transporter; Provisional

Probab=81.56  E-value=21  Score=36.62  Aligned_cols=67  Identities=18%  Similarity=0.206  Sum_probs=45.1

Q ss_pred             ccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhhhHHHHHHHHHHHHH
Q 043481           50 WANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNFTTMLLFGICGTVIS  126 (351)
Q Consensus        50 ~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~~~i~~la~~g~~~~  126 (351)
                      ++-...+.++.|+++|....           +.+ +...++++.+-+|..|++.-.+   .+||+..+...++++.++..
T Consensus        36 ~LG~~~g~L~vgl~~g~~~~-----------~~~-~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~  103 (558)
T PRK04972         36 QLGNSIGVLVVSLLLGQQHF-----------SIN-TDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSA  103 (558)
T ss_pred             ecCcchHHHHHHHHHHhCCC-----------CCC-hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45666788999999996421           112 2356788888899999998855   55666566666666655554


Q ss_pred             HH
Q 043481          127 FY  128 (351)
Q Consensus       127 ~~  128 (351)
                      .+
T Consensus       104 ~~  105 (558)
T PRK04972        104 LV  105 (558)
T ss_pred             HH
Confidence            43

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=80.56  E-value=48  Score=31.84  Aligned_cols=106  Identities=10%  Similarity=-0.012  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHHHHHHhhhH
Q 043481           35 LCACIIIGHLIEENRWANESITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTT  114 (351)
Q Consensus        35 l~~~~~~~~~l~~~~~iP~~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~~l~~~~~~  114 (351)
                      +....+.+..+.|+.|+|.+.  ++..++++...+....    ...+ -|+.+..++-.++--..|.++|...+++..|.
T Consensus       193 l~~~~~~~g~l~~~lr~Pa~~--ll~~l~l~a~v~~~~~----~~~~-lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~  265 (352)
T COG3180         193 LILAALLGGLLGKLLRFPAPT--LLGPLLLGAIVHFGGG----ITIQ-LPAWLLAVAQALIGALIGSRFDRSILREAKRL  265 (352)
T ss_pred             HHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHhhcccc----eeee-CCHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence            333444455555556687765  4455555554443210    0122 24556666666677778999998887766555


Q ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 043481          115 MLL--FGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLA  153 (351)
Q Consensus       115 i~~--la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~all  153 (351)
                      ...  +..++..+-+...+...++..      +.|+.++++
T Consensus       266 ~~~~~v~ii~l~~~~~~~a~ll~~~~------~i~~~ta~L  300 (352)
T COG3180         266 LPAILVSIIALMAIAAGMAGLLSWLT------GIDLNTAYL  300 (352)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHH
Confidence            332  233333333333333333332      778887765

>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain

Probab=80.14  E-value=30  Score=29.11  Aligned_cols=109  Identities=13%  Similarity=0.087  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCccccccChhHHHHhhhHHHhhHhhhcCCHH---HHHHhh-hHHHHHHHHHHHHHHHH
Q 043481           54 SITALLLGLCAGGVVLLASKDRSSHLLVFNEDLFFLYLLPPIIFNAGFQVKKK---QFFKNF-TTMLLFGICGTVISFYL  129 (351)
Q Consensus        54 ~~~~ll~GillG~~~~~~~~~~~~~~~~~~~~~~~~i~L~~ilF~~gl~l~~~---~l~~~~-~~i~~la~~g~~~~~~~  129 (351)
                      ..+.++.|+++|..... .+... ++..--++.+.++.|.+-++..|++--.+   .+||.. ...+.++...+++....
T Consensus        24 ~~G~L~vgL~~G~~~~~-~p~~~-~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~  101 (154)
T TIGR01625        24 AGGVLFVGLLLGHFGAT-GPLTW-YIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLL  101 (154)
T ss_pred             cHHHHHHHHHHHhcccc-CCcce-ecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            56788889888875321 00000 00000124677899988899999988755   444543 23333444445555555


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHhhhhcc-cccHHHHHHHhcc
Q 043481          130 ISVGAFSIFKKMGMTSLRIQDFLAIGAILS-ATDSVCTLQVLSQ  172 (351)
Q Consensus       130 ~~~~~~~~~~~~g~~~~~~~~alllGails-aTdp~~v~~il~~  172 (351)
                      ..+..++++      +++..  ...|.+-. -|+|.+.....+.
T Consensus       102 ~~~~~~~~~------~~~~~--~~~G~~aGa~T~tpaL~aa~~~  137 (154)
T TIGR01625       102 VAVALIKLL------RINYA--LTAGMLAGATTNTPALDAANDT  137 (154)
T ss_pred             HHHHHHHHh------CCCHH--HHHHHHhccccChHHHHHHHHH
Confidence            555666655      55643  66676653 3777666555443

This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	99.12
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	98.27
2htg_A	28	NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute;	97.68
2k3c_A	33	TMIX peptide; membrane peptide, dodecylphosphochol	97.11
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	95.94
1y4e_A	27	Sodium/hydrogen exchanger 1; NHE1 isoform, transme	93.38

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=99.12  E-value=8.8e-10  Score=104.80  Aligned_cols=207  Identities=14%  Similarity=0.115  Sum_probs=140.8

Q ss_pred             hHHHHhhhHHHhhHhhhcCCHHHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhc
Q 043481           85 DLFFLYLLPPIIFNAGFQVKKKQF----FKNFT--TMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAIL  158 (351)
Q Consensus        85 ~~~~~i~L~~ilF~~gl~l~~~~l----~~~~~--~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGail  158 (351)
                      +.+-+-.+.+.+|..|+|+|.+.+    |+.++  .....+..|+++++.+     |+.+      +.+.+.+.--+++.
T Consensus        61 ~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~i-----y~~~------~~~~~~~~~gw~ip  129 (388)
T 1zcd_A           61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALL-----YLAF------NYADPITREGWAIP  129 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH-----HGGG------CCSSTTHHHHTSSS
T ss_pred             HHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHH-----HHHH------hcCChhhhhhhHHH
Confidence            456667888899999999998877    55544  3566788888877644     4444      45555677888999


Q ss_pred             ccccHHHHHHHhccCC--Cc-chhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          159 SATDSVCTLQVLSQDE--TP-FLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLG  235 (351)
Q Consensus       159 saTdp~~v~~il~~~~--~~-~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G  235 (351)
                      ++||.+.+..++...+  .| .++..+.+.+.+||..++++..++..   ++.+.   .....             .+..
T Consensus       130 ~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~~~---~~l~~-------------~~~~  190 (388)
T 1zcd_A          130 AATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDLSM---ASLGV-------------AAVA  190 (388)
T ss_dssp             SCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCCCH---HHHHH-------------HHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccH---HHHHH-------------HHHH
Confidence            9999999999998865  45 58899999999999999999988854   22221   11110             0111


Q ss_pred             HHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHhhhccccCCChhHHHHHHHHHHHHH-HH
Q 043481          236 LLSAYIIKTLYFLRHSTDREGAPMMLMAYLSCILAELLNLSGILTIFFCGIIMSHYTWHNVTESSRITTKHAFATIS-FI  314 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  314 (351)
                      ....+..+|    ++.+......  ......++.+|..|.++.+|.+++|+++.+..+++  ++..++.++-.+.+. ++
T Consensus       191 ~~~~~~l~r----~~v~~~~~y~--~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~--~~~~~~le~~l~p~v~~~  262 (388)
T 1zcd_A          191 IAVLAVLNL----CGARRTGVYI--LVGVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHG--RSPAKRLEHVLHPWVAYL  262 (388)
T ss_dssp             HHHHHHHHH----TTCCCTHHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGS--SCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH----hcchhHHHHH--HHHHHHHHHHHHhCccHHHHHHHHHHhccCCCccC--CCHHHHHHHHHHHHHHHH
Confidence            111122332    2222222233  22346678889999999999999999999753322  122445556566554 58


Q ss_pred             HHHHH-HHHhhhhccc
Q 043481          315 AETFI-FLYVFMDALD  329 (351)
Q Consensus       315 ~~~~~-Fv~vG~~~~~  329 (351)
                      +.|+| |...|..+..
T Consensus       263 ilPlFaFanaGv~l~~  278 (388)
T 1zcd_A          263 ILPLFAFANAGVSLQG  278 (388)
T ss_dssp             HHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHhcCeeecc
Confidence            89999 9999999854

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=98.27  E-value=4.1e-08  Score=59.09  Aligned_cols=31  Identities=32%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             CHHHHHHhhhhcccccHHHHHHHhccCCCcc
Q 043481          147 RIQDFLAIGAILSATDSVCTLQVLSQDETPF  177 (351)
Q Consensus       147 ~~~~alllGailsaTdp~~v~~il~~~~~~~  177 (351)
                      +|..++++|+++|+|||+++.+++|+.+.|+
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~   32 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKK   32 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcCCCC
Confidence            4556899999999999999999999998775

>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}

Probab=97.68  E-value=2.8e-06  Score=48.61  Aligned_cols=22  Identities=45%  Similarity=0.881  Sum_probs=20.5

Q ss_pred             chhHhhhhhhhhhhHHHHHHHH
Q 043481          177 FLYSIVFGEGVVNDATSIVLFN  198 (351)
Q Consensus       177 ~l~~ll~ges~~nD~~~iil~~  198 (351)
                      |+..+++|||++||++++++|.
T Consensus         5 ~L~~lvfGESllNDavaiVlf~   26 (28)
T 2htg_A            5 LLHILVFGESLLNDAVTVVLYK   26 (28)
T ss_dssp             TTHHHHTTTTTTTTTTTTTTTT
T ss_pred             eEEEEEEeeeeecccEEEEEEe
Confidence            7999999999999999998875

>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}

Probab=97.11  E-value=3.5e-06  Score=50.72  Aligned_cols=31  Identities=32%  Similarity=0.650  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHhhhcc
Q 043481          262 MAYLSCILAELLNLSGILTIFFCGIIMSHYT  292 (351)
Q Consensus       262 ~~~~~~~~ae~~g~Sgila~~v~Gl~~~~~~  292 (351)
                      .+|.+|..||.+|+||++|+++||+.++++.
T Consensus         2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~   32 (33)
T 2k3c_A            2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK   32 (33)
T ss_dssp             CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred             hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence            3678899999999999999999999998763

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=95.94  E-value=0.69  Score=42.78  Aligned_cols=146  Identities=20%  Similarity=0.222  Sum_probs=67.1

Q ss_pred             HHHhhhHHHhhHhhhcCCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHhhhhcccccHHHH
Q 043481           87 FFLYLLPPIIFNAGFQVKKKQFFKNFTTMLLFGICGTVISFYLISVGAFSIFKKMGMTSLRIQDFLAIGAILSATDSVCT  166 (351)
Q Consensus        87 ~~~i~L~~ilF~~gl~l~~~~l~~~~~~i~~la~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~alllGailsaTdp~~v  166 (351)
                      .....++.++|..|.++|.+++++..++.-... .+......+.-..++.+...++. +-+...++++-++.-+++-+.+
T Consensus        44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~-~~l~~~~vi~Pll~~~l~~~~~l-~~~~~~Glil~~~~P~~~~s~v  121 (332)
T 3zux_A           44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVI-IGVIAQFAIMPATAWCLSKLLNL-PAEIAVGVILVGCCPGGTASNV  121 (332)
T ss_dssp             GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHH-HHHHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHSCCCTHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHhcCCchhHHHH
Confidence            456788999999999999999995443322111 12233343333333333322332 1123333444344433333333


Q ss_pred             HHHhccCCCcchhHhhhhhhhhhhHHHHHHHHHHHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043481          167 LQVLSQDETPFLYSIVFGEGVVNDATSIVLFNAIQSFDFNNIDGTVALNLLGTFLYLYFTSTALGIVLGLLSAYII  242 (351)
Q Consensus       167 ~~il~~~~~~~l~~ll~ges~~nD~~~iil~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~G~~~G~~~~~~~  242 (351)
                      ..-+-+ |....   -.....+|+..+++..=....+..++....+......+    +..-+++=.+.|.+.++..
T Consensus       122 ~t~~a~-Gd~~l---a~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~~~~~~~----l~~~vllP~~lG~l~r~~~  189 (332)
T 3zux_A          122 MTYLAR-GNVAL---SVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMS----IVKMVLLPIVLGLIVHKVL  189 (332)
T ss_dssp             HHHHTT-CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            222222 23222   22345677777776655444333222122233333333    3333344445555554443

>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}

Probab=93.38  E-value=0.0077  Score=33.98  Aligned_cols=25  Identities=48%  Similarity=1.081  Sum_probs=21.4

Q ss_pred             cChhHHHHhhhHHHhhHhhhcCCHH
Q 043481           82 FNEDLFFLYLLPPIIFNAGFQVKKK  106 (351)
Q Consensus        82 ~~~~~~~~i~L~~ilF~~gl~l~~~  106 (351)
                      ++++.+....||+|+|++|+.++.+
T Consensus         2 ~~~~~FF~~LLPPII~~aGy~l~~r   26 (27)
T 1y4e_A            2 LQSDVFFLFLLPPIILDAGYFLPLR   26 (27)
T ss_dssp             CCSCSSHHHHSCCSSHHHHTTGGGG
T ss_pred             CccceeeeeccCccEeeccccccCC
Confidence            4677899999999999999998754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00