Citrus Sinensis ID: 043502

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------95
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGSIDQTGATKEGHLEEVKTKQKETLKKKDGDGGVDESSDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTARRRKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSEDETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
ccccHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccHHHHHHHcccccccccccEEEEEcccccEEEEcccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccEEEEEEccccEEEEEcccccEEEEEEcccEEEEEcccccccccccEEEEEEEcEEEEEEccccEEEEEcccccccEEEEEEEccccccccccccccEEEEEccEEEEcccEEEEEEccccEEEEEEccccccccccccccccEEEEcccccccccEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEEEccccEEEEccccccccEEEEcccccccccccEEEEEEEcccccEEEEEEccccccccccccccccccccccccHHHccccccccEEEcEEEEEcccccEEEEEccccccccccccccccccEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHEEEEcccEEEEEEccccEEEEEEcccEEEEcccccccccccEEEEcccEEEEEEccccEEEEEccccccEEEEEcccccccEEccccccccccccccccccccEEEEEEccccEEEEEEEcccEEEEccccccccccccccccccccccEEEEEEccccEEEEcccccEEEEccccccEEEEcccccccccccccccccEEEEEccccEEEEEEccccccEEEEccccccccEEEccccccccccEEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEccccccEEEEccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEcccccEEEEEEEcccccccccEEEEEEcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHEEEccccEEEEEcccccEEEEEcccccEEEEcccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHEEEEEEEcccEEEEEcccccEEEEEccccEEEEEccccccccccHHHEEEEccEEEEEEcccEEEEEEEccccccEEEEEEcccccccccccccccEEEEccEEEEccccEEEEEccccEEEEEEEcccccEccccccccccEEEEEccccccccEEEEEEccccEEEEcccccccccHcEcccccccccccccccccEccccccccccEEEEEEccccEEEEEEccccEEEEEcccccccEEEEEccccccccccccEEEEEEccccEEEEEEEcccccccccccccccEEcccccccccEcccccccEEcccEEEEEcccccEEEEccccccccccccccccHHEEccccEEEEEEEccccccccccHHccccccccccEccccccccccccccccccccccHHHHEEEEEccccccccccccccccccHHHHHcccEEEEEcccEEEEEEccccEEEEEEcccEEEEEEcccccccccEEEccccEEEEEEccccEEEEEcccccEEEEEcHHHccccEEcccccccccccccccEcccccEEEEcccccEEHEEEEccccEEEccccccccEEEEEccHHHHHccEEEEEccccEEEEEcccEHHHHHccccccEEEEEcccccEcccccccccEEEEEEccccEEEEEEccccccEEEEcccccccEEEEEcccccccccEEEEEEccccEEEEEcccccEEEEccccccccccccccHHHHcccccccEEccccccHHcHHHHHcccccccccccccEEcccccccccccEEEEEccccEEEEEEcccccEEEEEEcccccHHHHHHHHHHHHc
ILSAVTMSMFHLIFFIRVLLSVSYLVFldsaswcphqyvqqSSQQFEQKTDRFWEFREEtnswievelpydlvscvndncskvgsidqtgatkeghlEEVKTKQKETLkkkdgdggvdessdivlplrkrisltkmsetsiwVTGVSGSVYERFWNGVQwviaphdlpisagpaiSVFIVNQRILALAEAGVLYqmqlgdnsqpiWVEFIPAIDQSINGEAEQRSVIQIKsgvvsqdgervYFCTKNglllelsevepprwlnhgrppganVAAIADAGNVRPEVVYTIsstgdlyeydriskpswrkhiwskgtaanaslipSMACtlhgligdhstsLFLLTKGGNLVERRIQQRKWKWiihgspedthltsitpvqqdesneKFFSLFLTTsagavfeyqipkysgtsqenqfsggwishlhppharaargavglpfqvgrtifplddgrlaelhpsglggensgpinqlsvRRKVSIKYVWSILdapetegwnaeycteersplncmagtkdepndlgitrtarrrkgsqaqydylfpsisggraqnpieeyslpdnwinnYFRLRVMHGsrsfflitdggfTFEYLYAESVWLWLrhdhstpmrgvlgnyngSLYMVDLYGSLLIRERSSNELAWINCTamrkgrqviggppwdgitgkAMKVTAEDALFFVSKNGRLLQFTVALRKFkwkdcrhpldtkvaCIVDQELFRENIVFVVgrngrlyqYNKVTELWHEHYQSQHLVLsilpgtamrppsasltgslfmlsedgglveyhwntwdgwnwvehgtpgkgvtlvgspgpclhgnqllligSDGKVYLRYMDQMTwrwkncgfphkakensedetqigaretteevcndenfeasmdkdaddlndlkshcdpkvaatrpipfsedsvifdlrdgrlgemrrvEDTHWVWSrtintptsscfANYWTAVAS
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGsidqtgatkeghleevktkqketlkkkdgdggvdessdivlplrkrisltkmsetsiwVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIksgvvsqdgerVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAaiadagnvrPEVVYTisstgdlyeyDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPsglggensgpinqlsvrRKVSIKYVWSIldapetegwnAEYCTEErsplncmagtkdepndlgitrtarrrkgsqaqydylfpsisggraqnpiEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTamrkgrqviggppWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGfphkakensedetqigaretteevcndeNFEASMDKDADDLNDLKSHCDpkvaatrpipfsedsviFDLRDGRLgemrrvedthwvwsrtintptsscfaNYWTAVAS
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVqqssqqFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGSIDQTGATKEGHleevktkqketlkkkDGDGGVDESSDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTARRRKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSEDETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
****VTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVG**************************************IVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSI*********EKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAEL************INQLSVRRKVSIKYVWSILDAPETEGWNAEYCTE*********************************YDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMR***ASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFP*******************************************************IPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAV**
**S****SMFHLIFFIRVLLSVSYLVFLDSASWCPHQY***********TDRFWEFREETNSWIEVELPYDLVSCVNDNCSK**********************************VDESSDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIP********************GVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWS*********************GDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLT**************FSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGL*******************KYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKD****************************************SLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPM*GVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSEDETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQ***********KTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGSIDQTGATK*************************ESSDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTARRRKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHK***********GARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVG************************************SDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTK****************GSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSED*********TEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
ILSAVTMSMFHLIFFIRVLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVNDNCSKVGSIDQTGATKEGHLEEVKTKQKETLKKKDGDGGVDESSDIVLPLRKRISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSKGTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAARGAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPETEGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTARRRKGSQAQYDYLFPSISGGRAQNPIEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWVEHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSEDETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRDGRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query949
255544922942 conserved hypothetical protein [Ricinus 0.975 0.983 0.707 0.0
359479451949 PREDICTED: uncharacterized protein LOC10 0.991 0.991 0.685 0.0
297734947948 unnamed protein product [Vitis vinifera] 0.979 0.981 0.687 0.0
147846227952 hypothetical protein VITISV_006042 [Viti 0.979 0.976 0.685 0.0
224054500979 predicted protein [Populus trichocarpa] 0.930 0.901 0.692 0.0
224104181895 predicted protein [Populus trichocarpa] 0.928 0.984 0.688 0.0
356495729901 PREDICTED: uncharacterized protein LOC10 0.940 0.991 0.585 0.0
297596537956 Os01g0275900 [Oryza sativa Japonica Grou 0.968 0.961 0.543 0.0
125525377961 hypothetical protein OsI_01367 [Oryza sa 0.968 0.956 0.539 0.0
357127972961 PREDICTED: uncharacterized protein LOC10 0.945 0.933 0.540 0.0
>gi|255544922|ref|XP_002513522.1| conserved hypothetical protein [Ricinus communis] gi|223547430|gb|EEF48925.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1376 bits (3562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 663/937 (70%), Positives = 765/937 (81%), Gaps = 11/937 (1%)

Query: 18  VLLSVSYLVFLDSASWCPHQYVQQSSQQFEQKTDRFWEFREETNSWIEVELPYDLVSCVN 77
           VL+S S  + L SA  CP  YV+QS++QFEQKTDRFWEF+EE+N+W+EV+LPYDLVSC+N
Sbjct: 12  VLMSGSRFLILSSAFCCPQDYVKQSNRQFEQKTDRFWEFQEESNTWVEVKLPYDLVSCIN 71

Query: 78  DNCSKVGSIDQTGATKEG-HLEEVK--TKQKETLKKKDGDGGV-DESSDIVLPLRKRISL 133
           DNC+KVGSIDQ    KE  HLE     + Q E+LK+KDGDG V +E+S+++LP RKRISL
Sbjct: 72  DNCTKVGSIDQVTKNKEEEHLEREYDVSGQTESLKEKDGDGEVAEENSEVILPQRKRISL 131

Query: 134 TKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEAGVL 193
           T+MSETSIWVTG SGSVYERFWNGVQWVIAPHDLPI AG AI VF VN  ILAL+E GVL
Sbjct: 132 TRMSETSIWVTGESGSVYERFWNGVQWVIAPHDLPILAGHAICVFFVNHTILALSEVGVL 191

Query: 194 YQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLLLEL 253
           YQMQL D+SQPIWV F P +D + N EAEQ S+I IKSGVVS DG R+YFCTK GLLLEL
Sbjct: 192 YQMQLSDSSQPIWVAFTPTLDSTTNKEAEQSSMILIKSGVVSYDGLRIYFCTKEGLLLEL 251

Query: 254 SEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHIWSK 313
           +EVEPPRW++HGRPPG NVAAIADAG +RPEV+YTISS GDLYEYD+ SKPSW+KHIW++
Sbjct: 252 AEVEPPRWVHHGRPPGGNVAAIADAGTIRPEVLYTISSIGDLYEYDKSSKPSWKKHIWTE 311

Query: 314 GTAANASLIPSMACTLHGLIGDHSTSLFLLTKGGNLVERRIQQRKWKWIIHGSPEDTHLT 373
           GT  +A LIPS   T++GL G++S SLFLLTK G LVERR+ QRKWKWIIHGSP+D  LT
Sbjct: 312 GTGEDALLIPSTGYTINGLSGEYSISLFLLTKSGKLVERRLNQRKWKWIIHGSPKDHRLT 371

Query: 374 SITPVQQDESNEKFFSLFLTTSAGAVFEYQIPKYSGTSQENQFSGGWISHLHPPHARAAR 433
           S+TPV QD+SNE F SLF TT+ G +FEY+I K+SGT  +NQ S  W+SH HPP+A+AA+
Sbjct: 372 SMTPVVQDDSNENF-SLFFTTTTGYIFEYRILKHSGT-LDNQVSEPWLSHTHPPNAKAAK 429

Query: 434 GAVGLPFQVGRTIFPLDDGRLAELHPSGLGGENSGPINQLSVRRKVSIKYVWSILDAPET 493
           G  GL  QVGR IF LDDGRLAELH  GLGG+N GP  Q+++RRK S+KY+WS+LDAPET
Sbjct: 430 GIAGLQLQVGRIIFALDDGRLAELHLPGLGGDNIGPNYQINIRRKASVKYLWSMLDAPET 489

Query: 494 EGWNAEYCTEERSPLNCMAGTKDEPNDLGITRTA-RRRKGSQAQYDYLFPSISGGRAQNP 552
           EGWNAEYC EER P NC+ G K EPND GI+R+  RRRKGSQAQ +YL   ++G      
Sbjct: 490 EGWNAEYCKEERGPTNCIIGIKYEPNDSGISRSVTRRRKGSQAQQNYL---VAGASESIS 546

Query: 553 IEEYSLPDNWINNYFRLRVMHGSRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPMRGVL 612
            EEYS P+NWIN  FRLRVMH SRSFFLITDGG  FEYL  E+VWLWLRHDHSTPM+G L
Sbjct: 547 TEEYSFPENWINTNFRLRVMHESRSFFLITDGGLAFEYLNTENVWLWLRHDHSTPMKGAL 606

Query: 613 GNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVTAED 672
           GNYNGSL++VD++G+LL+RERS N+LAW+NCTAMRKG+QV GGPPW+GI GKA KVTAED
Sbjct: 607 GNYNGSLFLVDIHGNLLVRERSGNDLAWLNCTAMRKGKQVTGGPPWEGIPGKAKKVTAED 666

Query: 673 ALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQY 732
           ALFFVSK GRLLQF VALRKFKWKDCRHP +TKVA I+DQEL RE IVFV GRNGRLYQY
Sbjct: 667 ALFFVSKTGRLLQFIVALRKFKWKDCRHPPNTKVANIIDQELIREKIVFVTGRNGRLYQY 726

Query: 733 NKVTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWDGWNWV 792
           NKVTELWHEH+QSQHL+LS LPGTAMR  S SLTGSLFMLSEDGGLVEYHWNT +GWNW+
Sbjct: 727 NKVTELWHEHHQSQHLILSRLPGTAMRSSSVSLTGSLFMLSEDGGLVEYHWNTGEGWNWI 786

Query: 793 EHGTPGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQMTWRWKNCGFPHKAKENSED 852
           EHG P  GVTL+ SP PC   NQL LIGSDGKVY+RYMDQ TWRWKNCGFP   K N +D
Sbjct: 787 EHGKPNTGVTLITSPSPCFD-NQLFLIGSDGKVYMRYMDQKTWRWKNCGFPCARKTNDDD 845

Query: 853 ETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRD 912
           + Q    +  EE C D++  AS +KDA +  D   +CDPKVA+TRPIPFSEDSV+F+LRD
Sbjct: 846 QRQAETEDENEETCIDKDISASWEKDAGNFRDTNRNCDPKVASTRPIPFSEDSVVFELRD 905

Query: 913 GRLGEMRRVEDTHWVWSRTINTPTSSCFANYWTAVAS 949
           GRL EM+RVED+ W W+R I TPTSSC  NYWTAVAS
Sbjct: 906 GRLAEMQRVEDSLWRWARIIGTPTSSCITNYWTAVAS 942

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359479451|ref|XP_002274339.2| PREDICTED: uncharacterized protein LOC100258526 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734947|emb|CBI17181.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147846227|emb|CAN81659.1| hypothetical protein VITISV_006042 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054500|ref|XP_002298291.1| predicted protein [Populus trichocarpa] gi|222845549|gb|EEE83096.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104181|ref|XP_002313349.1| predicted protein [Populus trichocarpa] gi|222849757|gb|EEE87304.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356495729|ref|XP_003516726.1| PREDICTED: uncharacterized protein LOC100791208 [Glycine max] Back     alignment and taxonomy information
>gi|297596537|ref|NP_001042723.2| Os01g0275900 [Oryza sativa Japonica Group] gi|255673109|dbj|BAF04637.2| Os01g0275900 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|125525377|gb|EAY73491.1| hypothetical protein OsI_01367 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357127972|ref|XP_003565650.1| PREDICTED: uncharacterized protein LOC100831527 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00022214001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (943 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 949
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.35
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 98.28
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.27
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 98.21
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 97.72
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 97.53
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 97.24
PRK13684334 Ycf48-like protein; Provisional 97.07
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 97.01
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 96.91
PLN00033398 photosystem II stability/assembly factor; Provisio 96.71
PF07938311 Fungal_lectin: Fungal fucose-specific lectin; Inte 96.69
PF07938311 Fungal_lectin: Fungal fucose-specific lectin; Inte 96.68
COG1520370 FOG: WD40-like repeat [Function unknown] 96.29
PLN00033398 photosystem II stability/assembly factor; Provisio 96.17
COG1520370 FOG: WD40-like repeat [Function unknown] 96.08
cd00216488 PQQ_DH Dehydrogenases with pyrrolo-quinoline quino 95.97
PRK13684334 Ycf48-like protein; Provisional 95.33
PF14517229 Tachylectin: Tachylectin; PDB: 1TL2_A. 94.82
PF14517229 Tachylectin: Tachylectin; PDB: 1TL2_A. 92.1
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 91.83
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 91.42
PHA02790480 Kelch-like protein; Provisional 90.56
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 90.19
PHA02713557 hypothetical protein; Provisional 89.77
PRK05560805 DNA gyrase subunit A; Validated 89.71
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 88.41
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 88.19
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 86.17
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 85.66
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 84.67
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 84.66
PRK05560805 DNA gyrase subunit A; Validated 84.51
PLN02153341 epithiospecifier protein 83.97
PF03664271 Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int 81.51
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information 
Probab=98.35  E-value=7.5e-05  Score=77.52  Aligned_cols=224  Identities=18%  Similarity=0.250  Sum_probs=127.3

Q ss_pred             CceEEEEeeCCeeEEEEecCCEEEEEecCCCCCc----cccccccccceEEEeccCcEEEEEecCCCceeeeccCCCCCc
Q 043502          575 SRSFFLITDGGFTFEYLYAESVWLWLRHDHSTPM----RGVLGNYNGSLYMVDLYGSLLIRERSSNELAWINCTAMRKGR  650 (949)
Q Consensus       575 ~~s~fliTd~G~~fE~~~~~~~WlWl~H~h~T~m----~g~~g~~ngsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~  650 (949)
                      ++.+|+.+.+|.+|=.=-..+.-+|-......++    ..++...++.+|+...+|.|.-=.-..-...|..-...+.|.
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~  224 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR  224 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence            3466777777776644434455555432222111    123333556677767677665444333335664332222222


Q ss_pred             eeecCCCCCCCCCcceeecccCcEEEEecCCeEeEEEEeceeeeeecCCCCCCcceEEeecccccccCeEEEEccCceEe
Q 043502          651 QVIGGPPWDGITGKAMKVTAEDALFFVSKNGRLLQFTVALRKFKWKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLY  730 (949)
Q Consensus       651 ~V~~G~pwdgipG~~~~vt~~dklF~vt~~GrLlq~tva~rkwkW~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLY  730 (949)
                      .-+.  ....+.+.  -+..++.+|+++.+|.|+-+-....+..|..-. +      ....+ .+.++.||+...||+||
T Consensus       225 ~~~~--~~~~~~~~--p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~-~------~~~~p-~~~~~~vyv~~~~G~l~  292 (377)
T TIGR03300       225 TELE--RLVDVDGD--PVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDA-S------SYQGP-AVDDNRLYVTDADGVVV  292 (377)
T ss_pred             Cchh--hhhccCCc--cEEECCEEEEEEcCCEEEEEECCCCcEEEeecc-C------CccCc-eEeCCEEEEECCCCeEE
Confidence            1000  00001011  122578999999999999988888888897631 1      11122 34577999999999999


Q ss_pred             eecC--ceeeeeecCCCCceeeecCCCceecCCCCCCcceEEEEecCCCeEEEEEeCCC-CeEEeecCCCCCCceeecCC
Q 043502          731 QYNK--VTELWHEHYQSQHLVLSILPGTAMRPPSASLTGSLFMLSEDGGLVEYHWNTWD-GWNWVEHGTPGKGVTLVGSP  807 (949)
Q Consensus       731 EwNg--~TW~WhdHGkP~~t~ls~~pGtAM~psk~sl~gslFm~~snG~LyEr~Wntg~-gW~WVdHGtP~~gvtvv~sp  807 (949)
                      -++.  +...|-....+... .+   .-++      ..+.+|+.+.||.||----++|. -|++--|+.|.       ..
T Consensus       293 ~~d~~tG~~~W~~~~~~~~~-~s---sp~i------~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~-------~~  355 (377)
T TIGR03300       293 ALDRRSGSELWKNDELKYRQ-LT---APAV------VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGI-------AS  355 (377)
T ss_pred             EEECCCCcEEEccccccCCc-cc---cCEE------ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcc-------cc
Confidence            9554  45678642211111 00   1122      23579999999999874333333 46555566553       33


Q ss_pred             CCcccCceEEEEecCCceEE
Q 043502          808 GPCLHGNQLLLIGSDGKVYL  827 (949)
Q Consensus       808 G~sf~gsqLFviGSDG~LYe  827 (949)
                      .|++.+++||+.+.||+||-
T Consensus       356 sp~~~~~~l~v~~~dG~l~~  375 (377)
T TIGR03300       356 PPVVVGDGLLVQTRDGDLYA  375 (377)
T ss_pred             CCEEECCEEEEEeCCceEEE
Confidence            45778899999999999983

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level Back     alignment and domain information
>PF07938 Fungal_lectin: Fungal fucose-specific lectin; InterPro: IPR012475 Lectins are involved in many recognition events at the molecular or cellular level Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A Back     alignment and domain information
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PRK05560 DNA gyrase subunit A; Validated Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK05560 DNA gyrase subunit A; Validated Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query949
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 9e-06
 Identities = 55/420 (13%), Positives = 117/420 (27%), Gaps = 132/420 (31%)

Query: 23  SYLVFLDSASWCPHQYVQQSSQQFEQ---KTDRFW---EFREETNSWIEVELPYDL-VSC 75
           +  +F     W      ++  Q+F +   + +  +     + E     +  +   + +  
Sbjct: 64  TLRLF-----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR---QPSMMTRMYIEQ 115

Query: 76  VNDNCSKVGSIDQTGATKEGHLEEVKTKQKETLKKK-----DGDGGVDESSDIVLPLRKR 130
            +   +      +   ++     +++    E L+       DG  G  ++   +      
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCL-- 172

Query: 131 ISLTKMSETSIWVTGVSGSVYERFWNGVQWVIAPHDLPISAGPAISVFIVNQRILALAEA 190
                           S  V  +    + W        ++     S   V + +  L   
Sbjct: 173 ----------------SYKVQCKMDFKIFW--------LNLKNCNSPETVLEMLQKL--- 205

Query: 191 GVLYQMQLGDNSQPIWVEFIPAIDQSINGEAEQRSVIQIKSGVVSQDGERVYFCTKNGLL 250
             LYQ+     S+    +    I   I+   +      +K         + Y   +N LL
Sbjct: 206 --LYQIDPNWTSRS---DHSSNIKLRIH-SIQAELRRLLK--------SKPY---ENCLL 248

Query: 251 LELSEVEPPRWLNHGRPPGANVAAIADAGNVRPEVVYTISSTGDLYEYDRISKPSWRKHI 310
           + L  V+  +                +A N+  +++ T   T      D +S  +   HI
Sbjct: 249 V-LLNVQNAK--------------AWNAFNLSCKILLT---TRFKQVTDFLS-AATTTHI 289

Query: 311 ----WSKGTAANASL-------------IPSMACTLH----GLIGDHSTSLFLLTKGGNL 349
                S     +                +P    T +     +I +       +  G   
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE------SIRDGLAT 343

Query: 350 VE--RRIQQRKWKWIIHGSPEDTHLTSITPVQQDESNEKFFSLFLTTSAGAVFEY--QIP 405
            +  + +   K   II  S     L  + P    E  + F  L       +VF     IP
Sbjct: 344 WDNWKHVNCDKLTTIIESS-----LNVLEP---AEYRKMFDRL-------SVFPPSAHIP 388
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query949
1ofz_A312 Fucose-specific lectin; sugar-binding protein, AAL 98.82
1ofz_A312 Fucose-specific lectin; sugar-binding protein, AAL 98.62
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 98.38
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 98.36
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 97.55
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 97.49
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 97.35
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 97.16
3v9f_A781 Two-component system sensor histidine kinase/RESP 96.79
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 96.78
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 96.06
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 95.69
2hz6_A369 Endoplasmic reticulum to nucleus signalling 1 isof 95.67
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 95.64
1zi0_A307 DNA gyrase subunit A; beta pinwheel, topoisomerase 95.23
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 94.94
2ad6_A571 Methanol dehydrogenase subunit 1; PQQ configuratio 94.7
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 94.65
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 94.6
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 94.54
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 94.51
1kb0_A 677 Quinohemoprotein alcohol dehydrogenase; beta-prope 94.28
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 94.2
1flg_A582 Protein (quinoprotein ethanol dehydrogenase); supe 93.99
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 93.72
2ad6_A 571 Methanol dehydrogenase subunit 1; PQQ configuratio 93.44
2be1_A339 Serine/threonine-protein kinase/endoribonuclease; 93.18
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 93.17
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 92.74
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 92.68
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 92.4
1flg_A 582 Protein (quinoprotein ethanol dehydrogenase); supe 92.12
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 92.05
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 91.97
3a0f_A763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 91.96
1zi0_A307 DNA gyrase subunit A; beta pinwheel, topoisomerase 91.86
1yiq_A 689 Quinohemoprotein alcohol dehydrogenase; electron t 91.43
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 91.41
1kv9_A 668 Type II quinohemoprotein alcohol dehydrogenase; el 91.03
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 90.92
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 90.69
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 90.58
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 90.35
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 90.29
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 90.24
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 90.24
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 89.47
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 88.78
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 88.53
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 87.76
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 87.73
3v9f_A781 Two-component system sensor histidine kinase/RESP 87.46
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 87.41
4a2l_A795 BT_4663, two-component system sensor histidine kin 87.18
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 86.72
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 85.71
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 85.44
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 85.42
1wp5_A323 Topoisomerase IV; broken beta-propeller, hairpin-i 85.36
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 85.22
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 84.78
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 84.75
3l6v_A370 GYRA, DNA gyrase subunit A; gyrase A C-terminal do 84.68
3l6v_A370 GYRA, DNA gyrase subunit A; gyrase A C-terminal do 84.62
1kv9_A668 Type II quinohemoprotein alcohol dehydrogenase; el 84.42
2fp8_A322 Strictosidine synthase; six bladed beta propeller 84.33
1w6s_A599 Methanol dehydrogenase subunit 1; anisotropic, ele 84.27
3a0f_A 763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 83.33
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 83.1
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 83.04
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 82.63
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 82.5
2cn3_A737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 82.47
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 82.46
1wp5_A323 Topoisomerase IV; broken beta-propeller, hairpin-i 81.51
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 80.29
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 80.06
2bt9_A90 Lectin; sugar recognition, beta-propeller; HET: MF 80.01
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A* Back     alignment and structure
Probab=98.82  E-value=1.6e-07  Score=97.82  Aligned_cols=199  Identities=13%  Similarity=0.220  Sum_probs=122.7

Q ss_pred             ceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcceeec----ccCcEEEEecCCeEeEEEEeceee
Q 043502          618 SLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAMKVT----AEDALFFVSKNGRLLQFTVALRKF  693 (949)
Q Consensus       618 sLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~~vt----~~dklF~vt~~GrLlq~tva~rkw  693 (949)
                      .||..|.+|.|+|+.+.++. .|..-+. .  ..+....|-.  |=+|.-.-    ..=.+|..++|+.|.|..+.... 
T Consensus        24 ~Vy~q~~~n~i~e~~~~~~~-~W~~~~~-~--~~~~~~~~~S--plAAv~~~~~~~~~i~Vfy~~~dn~l~e~~~~~~~-   96 (312)
T 1ofz_A           24 RVYFQDLNGKIREAQRGGDN-PWTGGSS-Q--NVIGEAKLFS--PLAAVTWKSAQGIQIRVYCVNKDNILSEFVYDGSK-   96 (312)
T ss_dssp             EEEEEBTTSEEEEEEEETTS-CCEECSG-G--GEEEECSTTC--CCEEEEEEETTEEEEEEEEECTTCBEEEEEEESSC-
T ss_pred             EEEEECCCCCEEEEEECCCC-CcccCcc-c--ccccccccCC--CceEEEecCCCCCEEEEEEECCCCcEEEEEecCCC-
Confidence            47999999999999999844 5877432 1  1111111111  22222121    23478999999999999998644 


Q ss_pred             eeec--CCC-----CCCcceEEee-cccccc--cCeEEEE---ccCceEee--ecCceee-eeecCCCCceeeecCCCce
Q 043502          694 KWKD--CRH-----PLDTKVACIV-DQELFR--ENIVFVV---GRNGRLYQ--YNKVTEL-WHEHYQSQHLVLSILPGTA  757 (949)
Q Consensus       694 kW~d--hg~-----PPgTkIata~-d~~~~r--~~~iFvv---G~NGrLYE--wNg~TW~-WhdHGkP~~t~ls~~pGtA  757 (949)
                       |..  .+.     .|+++||.+- ..--.+  .=+||+-   +.|..|+|  |++. |. |-..|++       .+||+
T Consensus        97 -W~~g~L~~~~~~~~~~S~lAAvs~~~~~~~~~~i~Vf~q~~~~~dn~I~e~~~~g~-W~~~~~lg~~-------~~gT~  167 (312)
T 1ofz_A           97 -WITGQLGSVGVKVGSNSKLAALQWGGSESAPPNIRVYYQKSNLSGSSIHEYVWSGK-WTAGASFGST-------APGTG  167 (312)
T ss_dssp             -EEECGGGGGCCBCCTTCCCEEEEESCBTTBCCEEEEEECSCCSTTEEEEEEEESSS-EEEEEEEEEE-------STTCC
T ss_pred             -ccccccCCcccccCCCCcceEEEecCCCCCCCeEEEEEEeccCCCCeEEEEEccCC-cccCCCcCCc-------cCCCC
Confidence             543  322     2688885541 111001  1148999   99999999  8987 66 6554411       22222


Q ss_pred             ecCCC-CCCcceEEEEecCCCeEEEEEeCCCCeE--EeecCC-CCCCceeecCCCCcccCceEEEEecCCceEEEEEeCC
Q 043502          758 MRPPS-ASLTGSLFMLSEDGGLVEYHWNTWDGWN--WVEHGT-PGKGVTLVGSPGPCLHGNQLLLIGSDGKVYLRYMDQM  833 (949)
Q Consensus       758 M~psk-~sl~gslFm~~snG~LyEr~Wntg~gW~--WVdHGt-P~~gvtvv~spG~sf~gsqLFviGSDG~LYeRywdg~  833 (949)
                      +.... .....++|..+.|+.|+|+.|+ +++|+  -+.++. |.++++.+.-.+..  .-.||..+.|+++|+..|++ 
T Consensus       168 laa~s~~~~~i~vf~q~~dn~i~~~~~d-~~~W~~~~~~~~~~p~s~lAavs~~~~~--~i~lf~~~~~n~i~~~~~~~-  243 (312)
T 1ofz_A          168 IGATAIGPGRLRIYYQATDNKIREHCWD-SNSWYVGGFSASASAGVSIAAISWGSTP--NIRVYWQKGREELYEAAYGG-  243 (312)
T ss_dssp             EEEEEEETTEEEEEEEBTTSEEEEEEES-SSCEEEEEEEEECCTTCEEEEEEETTTT--EEEEEEECTTSCEEEEEESS-
T ss_pred             cceeecCCCCEEEEEEcCCCcEEEEEec-CCcceECCEecCcCCCCCcEEEEeCCCC--EEEEEEECCCCcEEEEEecC-
Confidence            11100 1236799999999999999999 57776  222332 44334433222211  56899999999999999995 


Q ss_pred             cce
Q 043502          834 TWR  836 (949)
Q Consensus       834 tWt  836 (949)
                      +|+
T Consensus       244 ~W~  246 (312)
T 1ofz_A          244 SWN  246 (312)
T ss_dssp             SBC
T ss_pred             Ccc
Confidence            565
>1ofz_A Fucose-specific lectin; sugar-binding protein, AAL, aleuria aurantia lectin; HET: FUL FUC; 1.5A {Aleuria aurantia} SCOP: b.68.8.1 PDB: 1iuc_A* 1iub_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Back     alignment and structure
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Back     alignment and structure
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} Back     alignment and structure
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Back     alignment and structure
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV} Back     alignment and structure
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1 Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2bt9_A Lectin; sugar recognition, beta-propeller; HET: MFU; 0.94A {Ralstonia solanacearum} PDB: 2bs5_A* 2bs6_A* 3zw0_A* 3zw1_B* 3zw2_A* 3zwe_A* 3zzv_A* 3zw0_B* 3zw1_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query949
d1ofza_312 Fucose-specific lectin {Orange peel mushroom (Aleu 99.05
d1ofza_312 Fucose-specific lectin {Orange peel mushroom (Aleu 98.98
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 97.04
d1suua_304 DNA gyrase A C-terminal domain {Lyme disease spiro 96.27
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.13
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 95.0
d2ad6a1571 Methanol dehydrogenase, heavy chain {Methylophilus 94.88
d2ad6a1 571 Methanol dehydrogenase, heavy chain {Methylophilus 94.79
d2ebsa1 427 Oligoxyloglucan reducing end-specific cellobiohydr 93.11
d2ebsa2356 Oligoxyloglucan reducing end-specific cellobiohydr 91.75
d1kb0a2 573 Quinoprotein alcohol dehydrogenase, N-terminal dom 90.75
d1kb0a2573 Quinoprotein alcohol dehydrogenase, N-terminal dom 89.61
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 89.49
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 87.37
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 87.23
d1wp5a_323 Topoisomerase IV subunit A, ParC, C-terminal domai 87.21
d1w6sa_ 596 Methanol dehydrogenase, heavy chain {Methylobacter 84.85
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 84.56
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 83.78
d2ebsa1 427 Oligoxyloglucan reducing end-specific cellobiohydr 81.53
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 80.28
>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]} Back     information, alignment and structure
class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Fucose-specific lectin
family: Fucose-specific lectin
domain: Fucose-specific lectin
species: Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]

Probab=99.05  E-value=2.9e-09  Score=107.16  Aligned_cols=252  Identities=14%  Similarity=0.170  Sum_probs=149.1

Q ss_pred             cceEEEeccCcEEEEEecCCCceeeeccCCCCCceeecCCCCCCCCCcce---eeccc----CcEEEEecCCeEeEEEEe
Q 043502          617 GSLYMVDLYGSLLIRERSSNELAWINCTAMRKGRQVIGGPPWDGITGKAM---KVTAE----DALFFVSKNGRLLQFTVA  689 (949)
Q Consensus       617 gsLf~vd~~GsL~~R~~~g~~~~W~n~t~mr~G~~V~~G~pwdgipG~~~---~vt~~----dklF~vt~~GrLlq~tva  689 (949)
                      --||..|.+|.|++-.|.++. .|..-+.   ..-+..+     -+|-++   .+..+    =.+|++++|+.|++.++.
T Consensus        23 ~~Vy~q~~~g~i~~~~~~~g~-~W~~~~~---~~~~~~a-----~~gs~iaAvs~~~~~~~~~~Vf~~~tdn~l~~~~~~   93 (312)
T d1ofza_          23 QRVYFQDLNGKIREAQRGGDN-PWTGGSS---QNVIGEA-----KLFSPLAAVTWKSAQGIQIRVYCVNKDNILSEFVYD   93 (312)
T ss_dssp             EEEEEEBTTSEEEEEEEETTS-CCEECSG---GGEEEEC-----STTCCCEEEEEEETTEEEEEEEEECTTCBEEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEEcCCC-Ccccccc---cceeccc-----cCCCCceEEEeecCCCccEEEEEECCCCcEEEEEEe
Confidence            348999999999999998855 4755432   2222222     123222   11112    149999999999999998


Q ss_pred             ceeee-----eecCCCCCCcceEEeecccccccCeEEEEccCceEeeecCceee---eeecCCCCceeeecCCCceecCC
Q 043502          690 LRKFK-----WKDCRHPLDTKVACIVDQELFRENIVFVVGRNGRLYQYNKVTEL---WHEHYQSQHLVLSILPGTAMRPP  761 (949)
Q Consensus       690 ~rkwk-----W~dhg~PPgTkIata~d~~~~r~~~iFvvG~NGrLYEwNg~TW~---WhdHGkP~~t~ls~~pGtAM~ps  761 (949)
                      ..+|.     |...+-=|..+++.+.  .--.+..+|+.+.++.++.-......   |..=-+.........|||++...
T Consensus        94 ~~~W~~g~~~~~~~~~a~~S~~aa~~--~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~W~~~~~~~~~~pgt~ia~~  171 (312)
T d1ofza_          94 GSKWITGQLGSVGVKVGSNSKLAALQ--WGGSESAPPNIRVYYQKSNLSGSSIHEYVWSGKWTAGASFGSTAPGTGIGAT  171 (312)
T ss_dssp             SSCEEECGGGGGCCBCCTTCCCEEEE--ESCBTTBCCEEEEEECSCCSTTEEEEEEEESSSEEEEEEEEEESTTCCEEEE
T ss_pred             CCCCccCCCCCccceeccCCcceeEE--ccCCCccceeEEEecccccccceeeeeccCCCCccccCcccccCCCcceeeE
Confidence            88764     2333333455554431  11122346677776666652211111   11111112222344556543322


Q ss_pred             CC-CCcceEEEEecCCCeEEEEEeCCCCe-E-EeecCCCC-CCceee--cCCCCcccCceEEEEecCCceEEEEEeCCcc
Q 043502          762 SA-SLTGSLFMLSEDGGLVEYHWNTWDGW-N-WVEHGTPG-KGVTLV--GSPGPCLHGNQLLLIGSDGKVYLRYMDQMTW  835 (949)
Q Consensus       762 k~-sl~gslFm~~snG~LyEr~Wntg~gW-~-WVdHGtP~-~gvtvv--~spG~sf~gsqLFviGSDG~LYeRywdg~tW  835 (949)
                      .- .-...+|+++.||.|+++.|+ ++.| . |+..|-+. ..+..+  ++.+    .-.||++++||+||.+.|+++.|
T Consensus       172 s~~~~~i~vf~~~~d~~l~~~~~~-~~~w~~~~~~~~g~~~~~~~a~s~~~~~----~l~vf~~~~dn~l~~~~w~~s~~  246 (312)
T d1ofza_         172 AIGPGRLRIYYQATDNKIREHCWD-SNSWYVGGFSASASAGVSIAAISWGSTP----NIRVYWQKGREELYEAAYGGSWN  246 (312)
T ss_dssp             EEETTEEEEEEEBTTSEEEEEEES-SSCEEEEEEEEECCTTCEEEEEEETTTT----EEEEEEECTTSCEEEEEESSSBC
T ss_pred             ecCCCcEEEEEECCCCcEEEEEec-CCCCccccccCCCCCCCCceEEEecCCC----cEEEEEECCCCcEEEEEECCCCC
Confidence            11 123689999999999999998 5555 3 88776443 222222  2221    24679999999999999998877


Q ss_pred             ee---eecCCCCCCCcCcchhhhccccCCccccccchhhhcccccccccccccccCCCCcccccccccCCCCceEEEecC
Q 043502          836 RW---KNCGFPHKAKENSEDETQIGARETTEEVCNDENFEASMDKDADDLNDLKSHCDPKVAATRPIPFSEDSVIFDLRD  912 (949)
Q Consensus       836 tW---~NhG~P~~Gk~~~~~h~q~g~~~~~ee~c~d~d~a~slekdq~nf~d~~~~cd~Kva~~rpipfsedsV~felrD  912 (949)
                      .|   .+-|..     ...                                    -++++|+.++..+. .=.|+|+.-|
T Consensus       247 ~~~~~~~~~~~-----~~~------------------------------------~~gs~~a~~s~~~~-~~~vf~~~~~  284 (312)
T d1ofza_         247 TPGQIKDASRP-----TPS------------------------------------LPDTFIAANSSGNI-DISVFFQASG  284 (312)
T ss_dssp             CCEEECCTTSC-----SCB------------------------------------CTTCCCEEEEETTT-EEEEEEEETT
T ss_pred             CCCccccCCcc-----ccc------------------------------------CCCCceEEEecCCC-eEEEEEECCC
Confidence            64   333321     111                                    24678888875532 2347778899


Q ss_pred             CceeeEEEeccCce
Q 043502          913 GRLGEMRRVEDTHW  926 (949)
Q Consensus       913 Grl~E~~~~e~~~W  926 (949)
                      +.+-|..+-.+..|
T Consensus       285 ~~~~~~~~~~g~~W  298 (312)
T d1ofza_         285 VSLQQWQWISGKGW  298 (312)
T ss_dssp             TEEEEEEEETTTEE
T ss_pred             CCEEEEEEcCCCCc
Confidence            99999999876656
>d1ofza_ b.68.8.1 (A:) Fucose-specific lectin {Orange peel mushroom (Aleuria aurantia) [TaxId: 5188]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Back     information, alignment and structure
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure