Citrus Sinensis ID: 043505
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 75 | ||||||
| 359492699 | 1545 | PREDICTED: pentatricopeptide repeat-cont | 0.866 | 0.042 | 0.738 | 2e-22 | |
| 302142562 | 670 | unnamed protein product [Vitis vinifera] | 0.866 | 0.097 | 0.738 | 9e-22 | |
| 224085738 | 150 | predicted protein [Populus trichocarpa] | 0.866 | 0.433 | 0.738 | 6e-21 | |
| 255538774 | 1218 | pentatricopeptide repeat-containing prot | 0.88 | 0.054 | 0.696 | 6e-21 | |
| 255538778 | 540 | hypothetical protein RCOM_1595950 [Ricin | 0.973 | 0.135 | 0.64 | 3e-20 | |
| 356551872 | 945 | PREDICTED: pentatricopeptide repeat-cont | 0.84 | 0.066 | 0.714 | 5e-20 | |
| 356541741 | 594 | PREDICTED: myrosinase-binding protein-li | 0.866 | 0.109 | 0.681 | 3e-18 | |
| 357490819 | 604 | Myrosinase-binding protein-like protein | 0.8 | 0.099 | 0.704 | 4e-18 | |
| 356569525 | 604 | PREDICTED: agglutinin-like [Glycine max] | 0.866 | 0.107 | 0.666 | 2e-17 | |
| 222619339 | 833 | hypothetical protein OsJ_03649 [Oryza sa | 0.853 | 0.076 | 0.671 | 8e-17 |
| >gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/65 (73%), Positives = 60/65 (92%)
Query: 11 DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
D+ ++VGPWGGQ+G RWDDGV+S+VRQ+VI++G GIDSILIEYDK GSSVWS+KHGGSGG
Sbjct: 948 DNPISVGPWGGQDGLRWDDGVYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGG 1007
Query: 71 FKTNK 75
+TN+
Sbjct: 1008 TRTNR 1012
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302142562|emb|CBI19765.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224085738|ref|XP_002307685.1| predicted protein [Populus trichocarpa] gi|222857134|gb|EEE94681.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|255538778|ref|XP_002510454.1| hypothetical protein RCOM_1595950 [Ricinus communis] gi|223551155|gb|EEF52641.1| hypothetical protein RCOM_1595950 [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356541741|ref|XP_003539332.1| PREDICTED: myrosinase-binding protein-like At1g52040-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357490819|ref|XP_003615697.1| Myrosinase-binding protein-like protein [Medicago truncatula] gi|355517032|gb|AES98655.1| Myrosinase-binding protein-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|356569525|ref|XP_003552950.1| PREDICTED: agglutinin-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|222619339|gb|EEE55471.1| hypothetical protein OsJ_03649 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 75 | ||||||
| TAIR|locus:2032622 | 176 | AT1G73040 "AT1G73040" [Arabido | 0.826 | 0.352 | 0.516 | 6.2e-14 | |
| TAIR|locus:2034081 | 642 | MBP2 "myrosinase-binding prote | 0.626 | 0.073 | 0.416 | 1.2e-07 | |
| TAIR|locus:2034026 | 462 | MBP1 "myrosinase-binding prote | 0.626 | 0.101 | 0.416 | 5.6e-06 | |
| TAIR|locus:2057391 | 449 | AT2G25980 "AT2G25980" [Arabido | 0.626 | 0.104 | 0.416 | 3.1e-05 | |
| TAIR|locus:2088369 | 300 | JAL33 "AT3G16450" [Arabidopsis | 0.72 | 0.18 | 0.421 | 4.3e-05 | |
| TAIR|locus:2088364 | 300 | MLP-300B "AT3G16440" [Arabidop | 0.626 | 0.156 | 0.395 | 5.5e-05 | |
| TAIR|locus:2088374 | 705 | JAL34 "jacalin-related lectin | 0.626 | 0.066 | 0.395 | 6.3e-05 | |
| TAIR|locus:2195628 | 600 | AT1G60130 "AT1G60130" [Arabido | 0.626 | 0.078 | 0.437 | 9.7e-05 | |
| TAIR|locus:2056138 | 458 | JAL22 "AT2G39310" [Arabidopsis | 0.626 | 0.102 | 0.395 | 0.00011 | |
| TAIR|locus:2056128 | 459 | JAL23 "AT2G39330" [Arabidopsis | 0.626 | 0.102 | 0.395 | 0.00011 |
| TAIR|locus:2032622 AT1G73040 "AT1G73040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 32/62 (51%), Positives = 41/62 (66%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
V VGPWGG G WDDG++ VR++ + Y IDSI + YDK G S+KHGG GG KT
Sbjct: 13 VFVGPWGGNGGTTWDDGIYDGVREIRLVYDHCIDSISVIYDKNGKPAKSEKHGGVGGNKT 72
Query: 74 NK 75
++
Sbjct: 73 SE 74
|
|
| TAIR|locus:2034081 MBP2 "myrosinase-binding protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2034026 MBP1 "myrosinase-binding protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2057391 AT2G25980 "AT2G25980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088369 JAL33 "AT3G16450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088364 MLP-300B "AT3G16440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088374 JAL34 "jacalin-related lectin 34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2195628 AT1G60130 "AT1G60130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056138 JAL22 "AT2G39310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056128 JAL23 "AT2G39330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00014540001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (588 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 75 | |||
| cd09612 | 130 | cd09612, Jacalin, Jacalin-like plant lectin domain | 3e-09 | |
| pfam01419 | 132 | pfam01419, Jacalin, Jacalin-like lectin domain | 6e-09 | |
| smart00915 | 128 | smart00915, Jacalin, Jacalin-like lectin domain | 7e-09 | |
| PLN02193 | 470 | PLN02193, PLN02193, nitrile-specifier protein | 0.001 |
| >gnl|CDD|187708 cd09612, Jacalin, Jacalin-like plant lectin domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-09
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 24 GARWDDGVFSS-VRQVVISYGA-GIDSILIEYDKKGSSVWSDKHGGSGG 70
G+ WDDGVF +R++ + G GIDSI EYDK G V HGG GG
Sbjct: 1 GSAWDDGVFPDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGGG 49
|
Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states. Length = 130 |
| >gnl|CDD|216489 pfam01419, Jacalin, Jacalin-like lectin domain | Back alignment and domain information |
|---|
| >gnl|CDD|214909 smart00915, Jacalin, Jacalin-like lectin domain | Back alignment and domain information |
|---|
| >gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 75 | |||
| PLN02193 | 470 | nitrile-specifier protein | 99.56 | |
| PF01419 | 130 | Jacalin: Jacalin-like lectin domain; InterPro: IPR | 98.78 | |
| PF01419 | 130 | Jacalin: Jacalin-like lectin domain; InterPro: IPR | 84.56 |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=110.27 Aligned_cols=58 Identities=34% Similarity=0.619 Sum_probs=53.7
Q ss_pred cEEEceeeCCCCcccccCCCCCEEEEEEEeC-CcEeEEEEEEccCCCEEEcCCCCCCCC
Q 043505 13 HVTVGPWGGQNGARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGSGG 70 (75)
Q Consensus 13 ~~KiGpwGG~GG~~wDdg~~~~v~~I~I~~~-~~I~si~f~Yd~~G~~~~~~~~Gg~gG 70 (75)
..|++||||+||++|||+.+++||||+|.++ .+|++|+|+||++++++.+..||...+
T Consensus 2 ~~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~ 60 (470)
T PLN02193 2 AQKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTE 60 (470)
T ss_pred ceeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCC
Confidence 4799999999999999999999999999999 599999999999999888888998764
|
|
| >PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry | Back alignment and domain information |
|---|
| >PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 75 | ||||
| 1xxq_A | 161 | Structure Of A Mannose-Specific Jacalin-Related Lec | 2e-05 | ||
| 3p8s_A | 157 | Crystal Structure Of Single Chain Recombinant Jacal | 8e-04 |
| >pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin From Morus Nigra Length = 161 | Back alignment and structure |
|
| >pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin Showing Highly Dynamic Posttranslational Excission Loop That Reduces Binding Affinity Length = 157 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 75 | |||
| 1xxq_A | 161 | Mannose-binding lectin; tetrameric B-prism fold, j | 6e-16 | |
| 2jz4_A | 299 | Jasmonate inducible protein isolog; myrosinase bin | 5e-14 | |
| 2jz4_A | 299 | Jasmonate inducible protein isolog; myrosinase bin | 3e-11 | |
| 3p8s_A | 157 | Jacalin; hemeagglutinin, sugars, sugar binding P; | 3e-12 | |
| 4ddn_A | 160 | Ipomoelin; beta prism, carbohydrate binding protei | 7e-12 | |
| 1ouw_A | 152 | Lectin, agglutinin; beta-prism fold, mannose-bindi | 7e-12 | |
| 1zgr_A | 447 | Mannose/glucose-specific lectin; beta-prism, sugar | 8e-12 | |
| 1zgr_A | 447 | Mannose/glucose-specific lectin; beta-prism, sugar | 2e-10 | |
| 1zgr_A | 447 | Mannose/glucose-specific lectin; beta-prism, sugar | 3e-04 | |
| 3mit_A | 141 | Lectin; all beta sheet protein, beta prism-I fold, | 2e-11 | |
| 1c3k_A | 147 | Agglutinin; beta prism, jacalin-related, mannose, | 3e-11 | |
| 3llz_A | 133 | MPA, agglutinin alpha chain; maclura pomifera aggl | 4e-11 | |
| 3apa_A | 141 | Zymogen granule membrane protein 16; beta-prism fo | 5e-07 | |
| 3aqg_A | 158 | ZG16B/PAUF, zymogen granule protein 16 homolog B; | 1e-04 |
| >1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Length = 161 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 6e-16
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 16 VGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
VG WGG G WDDG ++ +R++ +S+G I + + YD G H G+
Sbjct: 19 VGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEP 73
|
| >2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 | Back alignment and structure |
|---|
| >2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 | Back alignment and structure |
|---|
| >3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Length = 157 | Back alignment and structure |
|---|
| >4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Length = 160 | Back alignment and structure |
|---|
| >1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Length = 152 | Back alignment and structure |
|---|
| >1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 | Back alignment and structure |
|---|
| >1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 | Back alignment and structure |
|---|
| >1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 | Back alignment and structure |
|---|
| >3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Length = 141 | Back alignment and structure |
|---|
| >1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Length = 147 | Back alignment and structure |
|---|
| >3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Length = 133 | Back alignment and structure |
|---|
| >3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
| >3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Length = 158 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 75 | |||
| 3p8s_A | 157 | Jacalin; hemeagglutinin, sugars, sugar binding P; | 99.79 | |
| 1c3k_A | 147 | Agglutinin; beta prism, jacalin-related, mannose, | 99.77 | |
| 1xxq_A | 161 | Mannose-binding lectin; tetrameric B-prism fold, j | 99.75 | |
| 2jz4_A | 299 | Jasmonate inducible protein isolog; myrosinase bin | 99.74 | |
| 4ddn_A | 160 | Ipomoelin; beta prism, carbohydrate binding protei | 99.67 | |
| 1ouw_A | 152 | Lectin, agglutinin; beta-prism fold, mannose-bindi | 99.67 | |
| 1zgr_A | 447 | Mannose/glucose-specific lectin; beta-prism, sugar | 99.66 | |
| 1zgr_A | 447 | Mannose/glucose-specific lectin; beta-prism, sugar | 99.66 | |
| 2jz4_A | 299 | Jasmonate inducible protein isolog; myrosinase bin | 99.64 | |
| 3mit_A | 141 | Lectin; all beta sheet protein, beta prism-I fold, | 99.62 | |
| 3apa_A | 141 | Zymogen granule membrane protein 16; beta-prism fo | 99.53 | |
| 3llz_A | 133 | MPA, agglutinin alpha chain; maclura pomifera aggl | 99.42 | |
| 2gud_A | 122 | Griffithsin, GRFT; lectins, domain swapping, manno | 99.36 | |
| 2gux_A | 138 | Griffithsin, GRFT; lectins, domain swapping, manno | 99.29 | |
| 3aqg_A | 158 | ZG16B/PAUF, zymogen granule protein 16 homolog B; | 99.14 | |
| 2gud_A | 122 | Griffithsin, GRFT; lectins, domain swapping, manno | 96.03 | |
| 2gux_A | 138 | Griffithsin, GRFT; lectins, domain swapping, manno | 96.01 | |
| 4ddn_A | 160 | Ipomoelin; beta prism, carbohydrate binding protei | 95.24 | |
| 3mit_A | 141 | Lectin; all beta sheet protein, beta prism-I fold, | 93.97 | |
| 3apa_A | 141 | Zymogen granule membrane protein 16; beta-prism fo | 93.92 | |
| 4gx7_A | 152 | Cytolysin and hemolysin HLYA pore-forming toxin; l | 93.9 | |
| 1c3k_A | 147 | Agglutinin; beta prism, jacalin-related, mannose, | 93.74 | |
| 1ouw_A | 152 | Lectin, agglutinin; beta-prism fold, mannose-bindi | 92.36 | |
| 3aqg_A | 158 | ZG16B/PAUF, zymogen granule protein 16 homolog B; | 92.2 | |
| 3llz_A | 133 | MPA, agglutinin alpha chain; maclura pomifera aggl | 91.46 | |
| 1xxq_A | 161 | Mannose-binding lectin; tetrameric B-prism fold, j | 89.61 | |
| 3p8s_A | 157 | Jacalin; hemeagglutinin, sugars, sugar binding P; | 88.81 | |
| 1xez_A | 721 | Hemolysin, cytolysin; pore-forming toxin, Pro-toxi | 87.25 | |
| 4gx7_A | 152 | Cytolysin and hemolysin HLYA pore-forming toxin; l | 83.15 |
| >3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=120.82 Aligned_cols=62 Identities=34% Similarity=0.706 Sum_probs=57.0
Q ss_pred cCcEEEceeeCCC-----CcccccCCCCCEEEEEEEeCC--cEeEEEEEEccCCCEEEcCCCCC--CCCcc
Q 043505 11 DDHVTVGPWGGQN-----GARWDDGVFSSVRQVVISYGA--GIDSILIEYDKKGSSVWSDKHGG--SGGFK 72 (75)
Q Consensus 11 ~~~~KiGpwGG~G-----G~~wDdg~~~~v~~I~I~~~~--~I~si~f~Yd~~G~~~~~~~~Gg--~gG~~ 72 (75)
..++|+|||||++ |++|||+++++|++|+|++++ +|++|+|.||++|+.+++.+||+ .++..
T Consensus 7 ~~~~k~Gp~GG~g~~~~~G~~~ddg~~~~v~~I~V~~g~~~~I~~I~f~Yd~~G~~~~~~~hGg~~~gg~~ 77 (157)
T 3p8s_A 7 SQTVIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGSPYVGQNHKSFITGFTP 77 (157)
T ss_dssp CCCEEEEEEECCC-----CEEEECCCCSEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCBCCSSCCCEE
T ss_pred ccCEEECcCCCCCCCCCCCCeeecCCCCceEEEEEEECCCceEEEEEEEEeCCCcEEEccCcCCCCCCCCe
Confidence 4689999999999 999999988999999999997 99999999999999999999998 55643
|
| >1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* | Back alignment and structure |
|---|
| >1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* | Back alignment and structure |
|---|
| >2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* | Back alignment and structure |
|---|
| >1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 | Back alignment and structure |
|---|
| >1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* | Back alignment and structure |
|---|
| >1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* | Back alignment and structure |
|---|
| >2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* | Back alignment and structure |
|---|
| >3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... | Back alignment and structure |
|---|
| >2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A | Back alignment and structure |
|---|
| >2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 | Back alignment and structure |
|---|
| >3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
| >2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A | Back alignment and structure |
|---|
| >2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 | Back alignment and structure |
|---|
| >4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* | Back alignment and structure |
|---|
| >3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* | Back alignment and structure |
|---|
| >3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
| >4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} | Back alignment and structure |
|---|
| >1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* | Back alignment and structure |
|---|
| >1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 | Back alignment and structure |
|---|
| >3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
| >3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... | Back alignment and structure |
|---|
| >1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* | Back alignment and structure |
|---|
| >3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} | Back alignment and structure |
|---|
| >1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A | Back alignment and structure |
|---|
| >4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 75 | ||||
| d1vboa_ | 149 | b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus he | 5e-16 | |
| d1c3ma_ | 145 | b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke | 1e-13 | |
| g1ugx.1 | 148 | b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus he | 1e-12 | |
| d1ouwa_ | 151 | b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge | 1e-10 | |
| d2guda1 | 121 | b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffith | 1e-06 |
| >d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Length = 149 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism I superfamily: Mannose-binding lectins family: Mannose-binding lectins domain: Artocarpin species: Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
Score = 65.4 bits (159), Expect = 5e-16
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
+TVGPWGG G WDDG ++ +RQ+ +SY I S + YD G KH +K
Sbjct: 5 ITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKN 64
Query: 74 NK 75
K
Sbjct: 65 VK 66
|
| >d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Length = 145 | Back information, alignment and structure |
|---|
| >d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 151 | Back information, alignment and structure |
|---|
| >d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Length = 121 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 75 | |||
| d1vboa_ | 149 | Artocarpin {Jackfruit (Artocarpus heterophyllus) [ | 99.8 | |
| d1c3ma_ | 145 | Heltuba lectin {Jerusalem artishoke (Helianthus tu | 99.76 | |
| g1ugx.1 | 148 | Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax | 99.64 | |
| d1ouwa_ | 151 | Calystegia sepium agglutinin {Hedge bindweed (Caly | 99.57 | |
| d2guda1 | 121 | Griffithsin {Red alga (Griffithsia) [TaxId: 35158] | 98.96 | |
| d2guda1 | 121 | Griffithsin {Red alga (Griffithsia) [TaxId: 35158] | 93.52 | |
| g1ugx.1 | 148 | Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax | 85.05 | |
| d1vboa_ | 149 | Artocarpin {Jackfruit (Artocarpus heterophyllus) [ | 83.46 | |
| d1ouwa_ | 151 | Calystegia sepium agglutinin {Hedge bindweed (Caly | 81.96 |
| >d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism I superfamily: Mannose-binding lectins family: Mannose-binding lectins domain: Artocarpin species: Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
Probab=99.80 E-value=3.9e-20 Score=120.10 Aligned_cols=61 Identities=38% Similarity=0.797 Sum_probs=56.7
Q ss_pred cCcEEEceeeCCCCcccccCCCCCEEEEEEEeCCcEeEEEEEEccCCCEEEcCCCCCCCCc
Q 043505 11 DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGF 71 (75)
Q Consensus 11 ~~~~KiGpwGG~GG~~wDdg~~~~v~~I~I~~~~~I~si~f~Yd~~G~~~~~~~~Gg~gG~ 71 (75)
+.++|+|||||++|++|||+.+++|++|+|+++++|++|||.|+++++.+....||+..+.
T Consensus 2 ~~~~k~GpwGG~gG~~~dd~~~~~v~~I~i~~g~~I~~i~f~Y~~~g~~~~~~~~gg~~g~ 62 (149)
T d1vboa_ 2 SQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPY 62 (149)
T ss_dssp CCCEEEEEEECSCSEEEECCCCSEEEEEEEEESSSEEEEEEEEEETTEEEECCCBCCCSCC
T ss_pred CccEEEcCCcCCCCcccccCCCCCcEEEEEEECCeEEEEEEEEEcCCeEEEcCCCCCCCCC
Confidence 4689999999999999999999999999999999999999999999999999999887553
|
| >d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} | Back information, alignment and structure |
|---|
| >d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} | Back information, alignment and structure |
|---|
| >d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} | Back information, alignment and structure |
|---|
| >d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} | Back information, alignment and structure |
|---|
| >d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} | Back information, alignment and structure |
|---|
| >d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} | Back information, alignment and structure |
|---|