Citrus Sinensis ID: 043505


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-----
MMSYERYEVEDDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKTNK
cccccccccccccEEEccccccccccccccccccEEEEEEEEccEEEEEEEEEcccccEEEEccccccccccccc
ccccccEEEEcccEEEccccccccccccccccccEEEEEEEEcccEEEEEEEEEccccEEEcccccccccccccc
mmsyeryeveddhvtvgpwggqngarwddgvFSSVRQVVISYGAGIDSILIEYdkkgssvwsdkhggsggfktnk
mmsyeryeveddhvtvgpwggqngarwDDGVFSSVRQVVISYGAGIDSILIEYDKKgssvwsdkhggsggfktnk
MMSYERYEVEDDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKTNK
**********DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKK*******************
******************WGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGS*****************
**********DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDK***********
***YERYEVEDDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWS*************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MMSYERYEVEDDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKTNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query75 2.2.26 [Sep-21-2011]
Q9SAV1642 Myrosinase-binding protei no no 0.626 0.073 0.416 0.0002
Q9SAV0462 Myrosinase-binding protei no no 0.626 0.101 0.416 0.0007
>sp|Q9SAV1|MB11_ARATH Myrosinase-binding protein-like At1g52030 OS=Arabidopsis thaliana GN=F-ATMBP PE=2 SV=1 Back     alignment and function desciption
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 20  GGQNGARWDDGVFSSVRQVVISYGA-GIDSILIEYDKKGSSVWSDKHG 66
           GG  GA WDDGVF  VR++++  G  G+  +  EY+K   ++  D+HG
Sbjct: 497 GGNGGASWDDGVFDGVRKILVGQGNDGVAFVTFEYNKGSQAILGDRHG 544





Arabidopsis thaliana (taxid: 3702)
>sp|Q9SAV0|MB12_ARATH Myrosinase-binding protein-like At1g52040 OS=Arabidopsis thaliana GN=At1g52040 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
359492699 1545 PREDICTED: pentatricopeptide repeat-cont 0.866 0.042 0.738 2e-22
302142562 670 unnamed protein product [Vitis vinifera] 0.866 0.097 0.738 9e-22
224085738150 predicted protein [Populus trichocarpa] 0.866 0.433 0.738 6e-21
255538774 1218 pentatricopeptide repeat-containing prot 0.88 0.054 0.696 6e-21
255538778 540 hypothetical protein RCOM_1595950 [Ricin 0.973 0.135 0.64 3e-20
356551872 945 PREDICTED: pentatricopeptide repeat-cont 0.84 0.066 0.714 5e-20
356541741 594 PREDICTED: myrosinase-binding protein-li 0.866 0.109 0.681 3e-18
357490819 604 Myrosinase-binding protein-like protein 0.8 0.099 0.704 4e-18
356569525 604 PREDICTED: agglutinin-like [Glycine max] 0.866 0.107 0.666 2e-17
222619339 833 hypothetical protein OsJ_03649 [Oryza sa 0.853 0.076 0.671 8e-17
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  109 bits (272), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 60/65 (92%)

Query: 11   DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
            D+ ++VGPWGGQ+G RWDDGV+S+VRQ+VI++G GIDSILIEYDK GSSVWS+KHGGSGG
Sbjct: 948  DNPISVGPWGGQDGLRWDDGVYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGG 1007

Query: 71   FKTNK 75
             +TN+
Sbjct: 1008 TRTNR 1012




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142562|emb|CBI19765.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224085738|ref|XP_002307685.1| predicted protein [Populus trichocarpa] gi|222857134|gb|EEE94681.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255538778|ref|XP_002510454.1| hypothetical protein RCOM_1595950 [Ricinus communis] gi|223551155|gb|EEF52641.1| hypothetical protein RCOM_1595950 [Ricinus communis] Back     alignment and taxonomy information
>gi|356551872|ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein At1g19720-like [Glycine max] Back     alignment and taxonomy information
>gi|356541741|ref|XP_003539332.1| PREDICTED: myrosinase-binding protein-like At1g52040-like [Glycine max] Back     alignment and taxonomy information
>gi|357490819|ref|XP_003615697.1| Myrosinase-binding protein-like protein [Medicago truncatula] gi|355517032|gb|AES98655.1| Myrosinase-binding protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356569525|ref|XP_003552950.1| PREDICTED: agglutinin-like [Glycine max] Back     alignment and taxonomy information
>gi|222619339|gb|EEE55471.1| hypothetical protein OsJ_03649 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query75
TAIR|locus:2032622 176 AT1G73040 "AT1G73040" [Arabido 0.826 0.352 0.516 6.2e-14
TAIR|locus:2034081642 MBP2 "myrosinase-binding prote 0.626 0.073 0.416 1.2e-07
TAIR|locus:2034026462 MBP1 "myrosinase-binding prote 0.626 0.101 0.416 5.6e-06
TAIR|locus:2057391449 AT2G25980 "AT2G25980" [Arabido 0.626 0.104 0.416 3.1e-05
TAIR|locus:2088369 300 JAL33 "AT3G16450" [Arabidopsis 0.72 0.18 0.421 4.3e-05
TAIR|locus:2088364300 MLP-300B "AT3G16440" [Arabidop 0.626 0.156 0.395 5.5e-05
TAIR|locus:2088374705 JAL34 "jacalin-related lectin 0.626 0.066 0.395 6.3e-05
TAIR|locus:2195628600 AT1G60130 "AT1G60130" [Arabido 0.626 0.078 0.437 9.7e-05
TAIR|locus:2056138458 JAL22 "AT2G39310" [Arabidopsis 0.626 0.102 0.395 0.00011
TAIR|locus:2056128459 JAL23 "AT2G39330" [Arabidopsis 0.626 0.102 0.395 0.00011
TAIR|locus:2032622 AT1G73040 "AT1G73040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 32/62 (51%), Positives = 41/62 (66%)

Query:    14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
             V VGPWGG  G  WDDG++  VR++ + Y   IDSI + YDK G    S+KHGG GG KT
Sbjct:    13 VFVGPWGGNGGTTWDDGIYDGVREIRLVYDHCIDSISVIYDKNGKPAKSEKHGGVGGNKT 72

Query:    74 NK 75
             ++
Sbjct:    73 SE 74




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0015996 "chlorophyll catabolic process" evidence=RCA
TAIR|locus:2034081 MBP2 "myrosinase-binding protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034026 MBP1 "myrosinase-binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057391 AT2G25980 "AT2G25980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088369 JAL33 "AT3G16450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088364 MLP-300B "AT3G16440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088374 JAL34 "jacalin-related lectin 34" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195628 AT1G60130 "AT1G60130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056138 JAL22 "AT2G39310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056128 JAL23 "AT2G39330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00014540001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (588 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query75
cd09612130 cd09612, Jacalin, Jacalin-like plant lectin domain 3e-09
pfam01419132 pfam01419, Jacalin, Jacalin-like lectin domain 6e-09
smart00915128 smart00915, Jacalin, Jacalin-like lectin domain 7e-09
PLN02193 470 PLN02193, PLN02193, nitrile-specifier protein 0.001
>gnl|CDD|187708 cd09612, Jacalin, Jacalin-like plant lectin domain Back     alignment and domain information
 Score = 49.1 bits (118), Expect = 3e-09
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 24 GARWDDGVFSS-VRQVVISYGA-GIDSILIEYDKKGSSVWSDKHGGSGG 70
          G+ WDDGVF   +R++ +  G  GIDSI  EYDK G  V    HGG GG
Sbjct: 1  GSAWDDGVFPDGLRKITVRSGENGIDSIKFEYDKDGQHVVGPWHGGGGG 49


Jacalin-like lectins are sugar-binding protein domains mostly found in plants. They adopt a beta-prism topology consistent with a circularly permuted three-fold repeat of a structural motif. Proteins containing this domain may bind mono- or oligosaccharides with high specificity. The domain can occur in tandem-repeat arrangements with up to six copies, and in architectures combined with a variety of other functional domains. The family was initially named after an abundant protein found in the jackfruit seed. Jacalin specifically binds to the alpha-O-glycoside of the disaccharide Gal-beta1-3-GalNAc, and has proven useful in the study of O-linked glycoproteins. Jacalin-like lectins in this family may occur in various oligomerization states. Length = 130

>gnl|CDD|216489 pfam01419, Jacalin, Jacalin-like lectin domain Back     alignment and domain information
>gnl|CDD|214909 smart00915, Jacalin, Jacalin-like lectin domain Back     alignment and domain information
>gnl|CDD|177844 PLN02193, PLN02193, nitrile-specifier protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 75
PLN02193 470 nitrile-specifier protein 99.56
PF01419130 Jacalin: Jacalin-like lectin domain; InterPro: IPR 98.78
PF01419130 Jacalin: Jacalin-like lectin domain; InterPro: IPR 84.56
>PLN02193 nitrile-specifier protein Back     alignment and domain information
Probab=99.56  E-value=1.1e-14  Score=110.27  Aligned_cols=58  Identities=34%  Similarity=0.619  Sum_probs=53.7

Q ss_pred             cEEEceeeCCCCcccccCCCCCEEEEEEEeC-CcEeEEEEEEccCCCEEEcCCCCCCCC
Q 043505           13 HVTVGPWGGQNGARWDDGVFSSVRQVVISYG-AGIDSILIEYDKKGSSVWSDKHGGSGG   70 (75)
Q Consensus        13 ~~KiGpwGG~GG~~wDdg~~~~v~~I~I~~~-~~I~si~f~Yd~~G~~~~~~~~Gg~gG   70 (75)
                      ..|++||||+||++|||+.+++||||+|.++ .+|++|+|+||++++++.+..||...+
T Consensus         2 ~~~~~~~gg~~g~~wddg~~~~v~~i~~~~~~~~i~~~~~~y~~~~~~~~~~~~g~~~~   60 (470)
T PLN02193          2 AQKLEAKGGETGDVWDDGVYDNVRKVYVGQGQYGIAFVKFEYVNGSQVVVGDEHGKKTE   60 (470)
T ss_pred             ceeeccccCCCCCcCcCCCcCCeEEEEEEeCCCEEEEEEEEEeCCCcEEEeccCCCCCC
Confidence            4799999999999999999999999999999 599999999999999888888998764



>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry Back     alignment and domain information
>PF01419 Jacalin: Jacalin-like lectin domain; InterPro: IPR001229 This entry represents a mannose-binding lectin domain with a beta-prism fold consisting of three 4-stranded beta-sheets, with an internal pseudo 3-fold symmetry Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query75
1xxq_A161 Structure Of A Mannose-Specific Jacalin-Related Lec 2e-05
3p8s_A157 Crystal Structure Of Single Chain Recombinant Jacal 8e-04
>pdb|1XXQ|A Chain A, Structure Of A Mannose-Specific Jacalin-Related Lectin From Morus Nigra Length = 161 Back     alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGS-GGFK 72 + VG WGG G WDDG ++ +R++ +S+G I + + YD G H G+ FK Sbjct: 17 IEVGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEPSFK 76 Query: 73 TNK 75 T K Sbjct: 77 TVK 79
>pdb|3P8S|A Chain A, Crystal Structure Of Single Chain Recombinant Jacalin Showing Highly Dynamic Posttranslational Excission Loop That Reduces Binding Affinity Length = 157 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query75
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 6e-16
2jz4_A 299 Jasmonate inducible protein isolog; myrosinase bin 5e-14
2jz4_A299 Jasmonate inducible protein isolog; myrosinase bin 3e-11
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 3e-12
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 7e-12
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 7e-12
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 8e-12
1zgr_A447 Mannose/glucose-specific lectin; beta-prism, sugar 2e-10
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 3e-04
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 2e-11
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 3e-11
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 4e-11
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 5e-07
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 1e-04
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Length = 161 Back     alignment and structure
 Score = 66.4 bits (162), Expect = 6e-16
 Identities = 19/55 (34%), Positives = 29/55 (52%)

Query: 16 VGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGG 70
          VG WGG  G  WDDG ++ +R++ +S+G  I +  + YD  G       H G+  
Sbjct: 19 VGLWGGPGGNAWDDGSYTGIREINLSHGDAIGAFSVIYDLNGQPFTGPTHPGNEP 73


>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Length = 299 Back     alignment and structure
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Length = 157 Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Length = 160 Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Length = 152 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Length = 447 Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Length = 141 Back     alignment and structure
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Length = 147 Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Length = 133 Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Length = 141 Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Length = 158 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query75
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 99.79
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 99.77
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 99.75
2jz4_A299 Jasmonate inducible protein isolog; myrosinase bin 99.74
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 99.67
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 99.67
1zgr_A 447 Mannose/glucose-specific lectin; beta-prism, sugar 99.66
1zgr_A447 Mannose/glucose-specific lectin; beta-prism, sugar 99.66
2jz4_A 299 Jasmonate inducible protein isolog; myrosinase bin 99.64
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 99.62
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 99.53
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 99.42
2gud_A122 Griffithsin, GRFT; lectins, domain swapping, manno 99.36
2gux_A138 Griffithsin, GRFT; lectins, domain swapping, manno 99.29
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 99.14
2gud_A122 Griffithsin, GRFT; lectins, domain swapping, manno 96.03
2gux_A138 Griffithsin, GRFT; lectins, domain swapping, manno 96.01
4ddn_A160 Ipomoelin; beta prism, carbohydrate binding protei 95.24
3mit_A141 Lectin; all beta sheet protein, beta prism-I fold, 93.97
3apa_A141 Zymogen granule membrane protein 16; beta-prism fo 93.92
4gx7_A152 Cytolysin and hemolysin HLYA pore-forming toxin; l 93.9
1c3k_A147 Agglutinin; beta prism, jacalin-related, mannose, 93.74
1ouw_A152 Lectin, agglutinin; beta-prism fold, mannose-bindi 92.36
3aqg_A158 ZG16B/PAUF, zymogen granule protein 16 homolog B; 92.2
3llz_A133 MPA, agglutinin alpha chain; maclura pomifera aggl 91.46
1xxq_A161 Mannose-binding lectin; tetrameric B-prism fold, j 89.61
3p8s_A157 Jacalin; hemeagglutinin, sugars, sugar binding P; 88.81
1xez_A721 Hemolysin, cytolysin; pore-forming toxin, Pro-toxi 87.25
4gx7_A152 Cytolysin and hemolysin HLYA pore-forming toxin; l 83.15
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Back     alignment and structure
Probab=99.79  E-value=1.4e-19  Score=120.82  Aligned_cols=62  Identities=34%  Similarity=0.706  Sum_probs=57.0

Q ss_pred             cCcEEEceeeCCC-----CcccccCCCCCEEEEEEEeCC--cEeEEEEEEccCCCEEEcCCCCC--CCCcc
Q 043505           11 DDHVTVGPWGGQN-----GARWDDGVFSSVRQVVISYGA--GIDSILIEYDKKGSSVWSDKHGG--SGGFK   72 (75)
Q Consensus        11 ~~~~KiGpwGG~G-----G~~wDdg~~~~v~~I~I~~~~--~I~si~f~Yd~~G~~~~~~~~Gg--~gG~~   72 (75)
                      ..++|+|||||++     |++|||+++++|++|+|++++  +|++|+|.||++|+.+++.+||+  .++..
T Consensus         7 ~~~~k~Gp~GG~g~~~~~G~~~ddg~~~~v~~I~V~~g~~~~I~~I~f~Yd~~G~~~~~~~hGg~~~gg~~   77 (157)
T 3p8s_A            7 SQTVIVGPWGAKVSTSSNGKAFDDGAFTGIREINLSYNKETAIGDLQVVYDLNGSPYVGQNHKSFITGFTP   77 (157)
T ss_dssp             CCCEEEEEEECCC-----CEEEECCCCSEEEEEEEEECTTSCEEEEEEEEEETTEEEECCCBCCSSCCCEE
T ss_pred             ccCEEECcCCCCCCCCCCCCeeecCCCCceEEEEEEECCCceEEEEEEEEeCCCcEEEccCcCCCCCCCCe
Confidence            4689999999999     999999988999999999997  99999999999999999999998  55643



>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Back     alignment and structure
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Back     alignment and structure
>1zgr_A Mannose/glucose-specific lectin; beta-prism, sugar binding protein; 2.50A {Parkia platycephala} PDB: 1zgs_A* Back     alignment and structure
>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Back     alignment and structure
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A Back     alignment and structure
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Back     alignment and structure
>2gud_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, SARS, sugar binding protein; HET: MAN BMA; 0.94A {Griffithsia} SCOP: b.77.3.1 PDB: 2guc_A* 2gty_A* 2gue_A* 2hyq_A* 2hyr_A* 2nu5_A* 2nuo_A* 3lky_A 3ll0_A 3ll2_A* 3ll1_A Back     alignment and structure
>2gux_A Griffithsin, GRFT; lectins, domain swapping, mannose binding, HIV, sugar binding protein; 2.00A {Griffithsia} SCOP: b.77.3.1 Back     alignment and structure
>4ddn_A Ipomoelin; beta prism, carbohydrate binding protein, carbohydrate/sugar sugar binding protein; HET: AMG; 1.90A {Ipomoea batatas} PDB: 3r50_A* 3r52_A* 3r51_A* Back     alignment and structure
>3mit_A Lectin; all beta sheet protein, beta prism-I fold, mannose specific, binding protein; HET: MAN; 2.32A {Musa acuminata} SCOP: b.77.3.0 PDB: 1x1v_A* 3miu_A* 3miv_A 2bmz_A* 2bmy_A* 2bn0_A* Back     alignment and structure
>3apa_A Zymogen granule membrane protein 16; beta-prism fold, sugar binding protein; 1.65A {Homo sapiens} Back     alignment and structure
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} Back     alignment and structure
>1c3k_A Agglutinin; beta prism, jacalin-related, mannose, sugar BIND protein; 2.00A {Helianthus tuberosus} SCOP: b.77.3.1 PDB: 1c3m_A* 1c3n_A* Back     alignment and structure
>1ouw_A Lectin, agglutinin; beta-prism fold, mannose-binding, jacali related, sugar binding protein; 1.37A {Calystegia sepium} SCOP: b.77.3.1 Back     alignment and structure
>3aqg_A ZG16B/PAUF, zymogen granule protein 16 homolog B; beta-prism fold, unknown function; 2.75A {Homo sapiens} Back     alignment and structure
>3llz_A MPA, agglutinin alpha chain; maclura pomifera agglutinin, MPA complex, GAL-beta-1, 3 lectin, sugar binding protein; HET: GAL NGA; 1.55A {Maclura pomifera} PDB: 3lly_A 1jot_A* 3lm1_A* 1m26_A* 1jac_A 1kuj_A* 1ku8_A* 1pxd_A* 1ugw_C* 1ugy_C* 1uh0_A* 1uh1_A* 1ws4_C* 1ws5_C* 1ugx_A* 1ugw_A* 1ugy_A* 1ws4_A* 1ws5_A* 1toq_A* ... Back     alignment and structure
>1xxq_A Mannose-binding lectin; tetrameric B-prism fold, jacalin-fold, sugar binding protein; 1.80A {Morus nigra} PDB: 1xxr_A* 1j4t_A 1j4s_A 1j4u_A* 1vbp_A* 1vbo_A* Back     alignment and structure
>3p8s_A Jacalin; hemeagglutinin, sugars, sugar binding P; 2.00A {Artocarpus heterophyllus} Back     alignment and structure
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A {Vibrio cholerae} PDB: 3o44_A Back     alignment and structure
>4gx7_A Cytolysin and hemolysin HLYA pore-forming toxin; lectin, carbohydrate-binding domain, beta-prism, pore-formin hemolysin, glycan-binding; HET: MMA; 2.85A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 75
d1vboa_149 b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus he 5e-16
d1c3ma_145 b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke 1e-13
g1ugx.1148 b.77.3.1 (B:,A:) Jacalin {Jackfruit (Artocarpus he 1e-12
d1ouwa_151 b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge 1e-10
d2guda1121 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffith 1e-06
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Length = 149 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism I
superfamily: Mannose-binding lectins
family: Mannose-binding lectins
domain: Artocarpin
species: Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
 Score = 65.4 bits (159), Expect = 5e-16
 Identities = 25/62 (40%), Positives = 33/62 (53%)

Query: 14 VTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGFKT 73
          +TVGPWGG  G  WDDG ++ +RQ+ +SY   I S  + YD  G      KH     +K 
Sbjct: 5  ITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPYKN 64

Query: 74 NK 75
           K
Sbjct: 65 VK 66


>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Length = 145 Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 151 Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query75
d1vboa_149 Artocarpin {Jackfruit (Artocarpus heterophyllus) [ 99.8
d1c3ma_145 Heltuba lectin {Jerusalem artishoke (Helianthus tu 99.76
g1ugx.1148 Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax 99.64
d1ouwa_151 Calystegia sepium agglutinin {Hedge bindweed (Caly 99.57
d2guda1121 Griffithsin {Red alga (Griffithsia) [TaxId: 35158] 98.96
d2guda1121 Griffithsin {Red alga (Griffithsia) [TaxId: 35158] 93.52
g1ugx.1148 Jacalin {Jackfruit (Artocarpus heterophyllus) [Tax 85.05
d1vboa_149 Artocarpin {Jackfruit (Artocarpus heterophyllus) [ 83.46
d1ouwa_151 Calystegia sepium agglutinin {Hedge bindweed (Caly 81.96
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism I
superfamily: Mannose-binding lectins
family: Mannose-binding lectins
domain: Artocarpin
species: Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]
Probab=99.80  E-value=3.9e-20  Score=120.10  Aligned_cols=61  Identities=38%  Similarity=0.797  Sum_probs=56.7

Q ss_pred             cCcEEEceeeCCCCcccccCCCCCEEEEEEEeCCcEeEEEEEEccCCCEEEcCCCCCCCCc
Q 043505           11 DDHVTVGPWGGQNGARWDDGVFSSVRQVVISYGAGIDSILIEYDKKGSSVWSDKHGGSGGF   71 (75)
Q Consensus        11 ~~~~KiGpwGG~GG~~wDdg~~~~v~~I~I~~~~~I~si~f~Yd~~G~~~~~~~~Gg~gG~   71 (75)
                      +.++|+|||||++|++|||+.+++|++|+|+++++|++|||.|+++++.+....||+..+.
T Consensus         2 ~~~~k~GpwGG~gG~~~dd~~~~~v~~I~i~~g~~I~~i~f~Y~~~g~~~~~~~~gg~~g~   62 (149)
T d1vboa_           2 SQTITVGPWGGPGGNGWDDGSYTGIRQIELSYKEAIGSFSVIYDLNGDPFSGPKHTSKLPY   62 (149)
T ss_dssp             CCCEEEEEEECSCSEEEECCCCSEEEEEEEEESSSEEEEEEEEEETTEEEECCCBCCCSCC
T ss_pred             CccEEEcCCcCCCCcccccCCCCCcEEEEEEECCeEEEEEEEEEcCCeEEEcCCCCCCCCC
Confidence            4689999999999999999999999999999999999999999999999999999887553



>d1c3ma_ b.77.3.1 (A:) Heltuba lectin {Jerusalem artishoke (Helianthus tuberosus) [TaxId: 4233]} Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Back     information, alignment and structure
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia) [TaxId: 35158]} Back     information, alignment and structure
>d1vboa_ b.77.3.1 (A:) Artocarpin {Jackfruit (Artocarpus heterophyllus) [TaxId: 3489]} Back     information, alignment and structure
>d1ouwa_ b.77.3.1 (A:) Calystegia sepium agglutinin {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure