Citrus Sinensis ID: 043512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MRTLSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLDL
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccEEEEcccHHHHHHHHHHHHccccccccEEEEEcccccccccEEEEEEccEEEEcccEEEEcccHHHHHHHHHccccccccccccccccEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHcccEEEEcccEEEEEEEccEEEEEcccccEEEccEEEEccccccccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEcccccccEEEEEccccccccccEEEEcccccccHHHHHHHccccccEEEEEEcccccccccccccccEEEcccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHEHEEEccccccccccccEEEEEccHHHHHHHHHHHHHccccccEEEEEEEEcccEccEEEEEEcccccEcccHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccEEEEEEcccccccccHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccHHHHHccHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEcccccHHHcccccccccccEEEEcccccccEEEEEEccccccccEEEEEEccccccHHHHHHHHHccccEEEEEcccccccccccccccEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccc
Coil and Loop (DISEMBL)
MRTLSILILLIfspqptfqqeptvciigsgiggssLAHFLRQyssknwhprilmferngvvggrmATVTISGqtfeagasilhpknyhtvnftkllnlkpkdppssedstafgiwdgskFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLagsggglwaveggnWQMAAGLINRSDVALHLHEEIESISYLREYYELnstkgnsytcqitvvatpldelnlhfsppisiperklqhtHATFVrgalnpayfgldgvskipelvatiedpdlpftCISVLkqhdendftykifsrkpmtdtlLDDIFSVRKETirinwgayphykapevfapfildgrhlYYVNAFENAASTMETSAVAAENVARLILSRFfskpsvtslnlktssDAREELHLDL
Flexible Loop (DISEMBL)
MRTLSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFtykifsrkpmtdtlLDDIFSVRKETIRInwgayphykaPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRffskpsvtslnlktssdareelhldl
Low Complexity Region (SEG)
MRTLSILILLIFSPQPTFQQEPTVCiigsgiggssLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQslsisglagavslagsggglwaVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLDL
Disordered region (IsUnstruct)
***LSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL************AFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFS***********************
Disordered Region (DISOPRED)
*RTLSILILL**************CIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFS***********************
Disordered Region (DISEMBL)
MRTLSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP*********TAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSS**********
Disordered Region (DISPRO)
MRTLSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD*PSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKP*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTLSILILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
P57681	500	Farnesylcysteine lyase OS	yes	no	0.915	0.892	0.667	0.0
Q95KC9	505	Prenylcysteine oxidase OS	N/A	no	0.862	0.831	0.335	1e-57
Q9UHG3	505	Prenylcysteine oxidase 1	yes	no	0.833	0.803	0.341	2e-53
Q5R748	505	Prenylcysteine oxidase OS	yes	no	0.841	0.811	0.329	2e-52
Q8C7K6	495	Prenylcysteine oxidase-li	yes	no	0.854	0.840	0.317	3e-52
Q9CQF9	505	Prenylcysteine oxidase OS	no	no	0.862	0.831	0.311	4e-49
Q0P5H1	492	Prenylcysteine oxidase-li	no	no	0.852	0.843	0.299	5e-49
Q8NBM8	494	Prenylcysteine oxidase-li	no	no	0.854	0.842	0.303	7e-49
Q99ML5	504	Prenylcysteine oxidase OS	yes	no	0.860	0.831	0.307	4e-47

>sp|P57681|PCYOX_ARATH Farnesylcysteine lyase OS=Arabidopsis thaliana GN=FLCY PE=1 SV=1

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 299/448 (66%), Positives = 365/448 (81%), Gaps = 2/448 (0%)

Query: 23  TVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGGRMATVTISGQTFEAGAS 80
           TVCI+GSGIGGSS+AHFLR YS        +ILMFER+ +VGGRM TVT++G TFEAG S
Sbjct: 37  TVCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFEAGGS 96

Query: 81  ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSL 140
           ILHPKNYH  +F +  NL  + P   E+S+A GIWDG +FV KT    +  PF+  IVS 
Sbjct: 97  ILHPKNYHVKDFVERFNLTVRLPTPIEESSAIGIWDGKRFVVKTFGSGTKFPFLDTIVSW 156

Query: 141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
            N + + LRYGLSLLRM SF E+ VD FLKYYES E+RP+F++V+ MLKW+GL+NLT  +
Sbjct: 157 VNDLYLFLRYGLSLLRMSSFIENTVDNFLKYYESLESRPIFDNVEGMLKWSGLYNLTKLT 216

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           L+E+L +A+LSPLL+ ELVT+ITRINYGQS+ ISGLAGAVSLAGSGGGLW+VEGGNWQMA
Sbjct: 217 LQEKLSEAQLSPLLVNELVTVITRINYGQSVLISGLAGAVSLAGSGGGLWSVEGGNWQMA 276

Query: 261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPIS 320
           A LIN SDV LHL+E+IESISYL  +YEL STKGNSY C +TVVATPLDE+++ FSP IS
Sbjct: 277 AKLINHSDVTLHLNEKIESISYLENHYELKSTKGNSYKCDVTVVATPLDEVDIQFSPTIS 336

Query: 321 IPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFT 380
           IP+R+LQHTH TFVRG LNP YFG+  +S +P LV T+EDP +PF+CIS+L+++ + D T
Sbjct: 337 IPKRELQHTHTTFVRGLLNPGYFGMKSLSDVPALVGTLEDPLIPFSCISILRKYSKTDMT 396

Query: 381 YKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENA 440
           YKIF+R+P +D+LLD++FS R ET+RI+WGAYP Y APEVFAPFILD  HLYYVNAFENA
Sbjct: 397 YKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDDHHLYYVNAFENA 456

Query: 441 ASTMETSAVAAENVARLILSRFFSKPSV 468
           ASTMETSAVA EN+ARLI+SRF +K S+
Sbjct: 457 ASTMETSAVAGENIARLIISRFMTKESL 484

Involved in the degradation of prenylcysteine. Cleaves specifically the thioether bond of S-farnesyl-L-cysteine and has no activity with S-geranylgeranyl-L-cysteine. Recognizes also N-acetyl-farnesylcysteine and may have a role in deprenylation of farnesylated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 3EC: .EC: 6

>sp|Q95KC9|PCYOX_MACFA Prenylcysteine oxidase OS=Macaca fascicularis GN=PCYOX1 PE=2 SV=1

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 232/468 (49%), Gaps = 48/468 (10%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           + +IG+GIGG+S A++LRQ   K+   +I +FER   VGGR+AT+ + GQ +EAG S++H
Sbjct: 37  IAVIGAGIGGTSAAYYLRQKFGKD--VKIDLFERE-EVGGRLATMMVQGQEYEAGGSVIH 93

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS 143
           P N H   F K L L              GI++G   VF+           +    + N 
Sbjct: 94  PLNLHMKRFVKDLGLSTVQASGG----LLGIYNGEALVFE-----------ESNWFIINV 138

Query: 144 VLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARS 200
           + +V RYG   LRM  + E  +DKF++ Y        F SV+++L   G      +  R+
Sbjct: 139 IKLVWRYGFQSLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRT 198

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           L E L  A  S   + E++  + R++YGQS  I+   GAVSL+ S  GLWAVEGGN  + 
Sbjct: 199 LLETLQKAGFSEKFLNEMIAPVMRVDYGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVC 258

Query: 261 AGLINRSDVAL------HLHEEIESI-----SYLREYYELNSTKGNSYTCQITVVATPLD 309
           +GL+  S   L      ++ E+ ++      + + E      T+ +S    I +VATPL+
Sbjct: 259 SGLLQASKSNLISGSVMYIEEKTKTKHTGNPTKMYEVVYQIGTETHSDFYDIVLVATPLN 318

Query: 310 ELN-----LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDL 363
                   L+F PPI    +  QH   T V+G LN + F    + K     V T ++ DL
Sbjct: 319 RKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLSTVLTTDNSDL 378

Query: 364 PFTCISVLKQHDEND---------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPH 414
               I ++    E +         + +KIFS++ +T   +  +F      ++  W AYPH
Sbjct: 379 FINSIGIVSSVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPH 438

Query: 415 YKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
           YK PE     IL  R LYY+N  E AAS ME SA+AA N A L   R+
Sbjct: 439 YKPPEKCPSIILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485

Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q9UHG3|PCYOX_HUMAN Prenylcysteine oxidase 1 OS=Homo sapiens GN=PCYOX1 PE=1 SV=3

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 158/462 (34%), Positives = 222/462 (48%), Gaps = 56/462 (12%)

Query: 34  SSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFT 93
           +S A++LRQ   K+   +I +FER  V GGR+AT+ + GQ +EAG S++HP N H   F 
Sbjct: 47  TSAAYYLRQKFGKD--VKIDLFEREEV-GGRLATMMVQGQEYEAGGSVIHPLNLHMKRFV 103

Query: 94  KLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLS 153
           K L L              GI++G   VF+           +    + N + +V RYG  
Sbjct: 104 KDLGLSAVQASGG----LLGIYNGETLVFE-----------ESNWFIINVIKLVWRYGFQ 148

Query: 154 LLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARL 210
            LRM  + E  +DKF++ Y        F SV+++L   G      +  R+L E L  A  
Sbjct: 149 SLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGF 208

Query: 211 SPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVA 270
           S   + E++  + R+NYGQS  I+   GAVSL+ S  GLWAVEGGN  + +GL+  S   
Sbjct: 209 SEKFLNEMIAPVMRVNYGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVCSGLLQASKSN 268

Query: 271 LHLHEEIESISYLRE----YYELNSTKGNSYTCQ-----------ITVVATPLDELN--- 312
           L       S+ Y+ E     Y  N TK      Q           I +VATPL+      
Sbjct: 269 LI----SGSVMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPLNRKMSNI 324

Query: 313 --LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCI- 368
             L+F PPI    +  QH   T V+G LN + F    + K     V T ++ DL    I 
Sbjct: 325 TFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLTTDNSDLFINSIG 384

Query: 369 ---SVLKQHD-----ENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEV 420
              SV ++ D     +  + +KIFS++ +T   +  +F      ++  W AYPHYK PE 
Sbjct: 385 IVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEK 444

Query: 421 FAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
               IL  R LYY+N  E AAS ME SA+AA N A L   R+
Sbjct: 445 CPSIILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485

Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q5R748|PCYOX_PONAB Prenylcysteine oxidase OS=Pongo abelii GN=PCYOX1 PE=2 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/458 (32%), Positives = 221/458 (48%), Gaps = 48/458 (10%)

Query: 34  SSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFT 93
           +S A++LRQ   K+   +I +FER  V GGR+AT+ + GQ +EAG S++HP N     F 
Sbjct: 47  TSAAYYLRQKFGKD--VKIDLFEREEV-GGRLATMMVQGQEYEAGGSVIHPLNLRMKRFV 103

Query: 94  KLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLS 153
           K L L              GI++G   VF+           +    + N + +V RYG  
Sbjct: 104 KDLGLSTVQASGG----LLGIYNGETLVFE-----------ESNWFIINVIKLVWRYGFQ 148

Query: 154 LLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARL 210
            LRM  + E  +DKF++ Y        F SV+++L   G      +  R+L E L  A  
Sbjct: 149 SLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGF 208

Query: 211 SPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVA 270
           S   + E++  + R+NYGQS  I+   GAVSL+ S  GLWAVEGGN  + +GL+  S   
Sbjct: 209 SEKFLNEMIAPVMRVNYGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVCSGLLQASKSN 268

Query: 271 L------HLHEEIESI-----SYLREYYELNSTKGNSYTCQITVVATPLDELN-----LH 314
           L      ++ E+ ++      + + E      T+  S    I +VATPL+        L+
Sbjct: 269 LISGSVMYIEEKTKTKHTGNPTKMYEVVYQIGTETRSDFYDIVLVATPLNRKMSNITFLN 328

Query: 315 FSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVLKQ 373
           F PPI    +  QH   T V+G LN + F    + K     V T ++ DL    I ++  
Sbjct: 329 FDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLTTDNSDLFINSIGIVSS 388

Query: 374 HDEND---------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPF 424
             E +         + +KIFS++ +T   +  +F      ++  W AYPHYK PE     
Sbjct: 389 VREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPSI 448

Query: 425 ILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
           IL  R LYY+N  E AAS ME SA+AA N A L   R+
Sbjct: 449 ILHDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485

Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q8C7K6|PCYXL_MOUSE Prenylcysteine oxidase-like OS=Mus musculus GN=Pcyox1l PE=2 SV=1

 Score =  206 bits (525), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 242/472 (51%), Gaps = 56/472 (11%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPR--ILMFERNGVVGGRMATVTISGQTFEAGASI 81
           + +IG+GIGGS++AHFL+Q+    + PR  I+++E+ G VGGR+AT++++ Q +E+GA+ 
Sbjct: 29  IAVIGAGIGGSAVAHFLQQH----FGPRVQIVVYEK-GTVGGRLATISVNKQNYESGAAS 83

Query: 82  LHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLA 141
            H  + H  +F KLL L+ +       +    I+ G  FV +           +    L 
Sbjct: 84  FHSLSLHMQDFVKLLGLRQRREVVGRSA----IFGGEHFVLE-----------ETDWYLL 128

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTA 198
           N   +   YG+S LR++ + E  ++KF++ Y+       F  V+E+L   G     N+T 
Sbjct: 129 NLFRLWWYYGISFLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGEATFVNMTQ 188

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQ 258
           RS+ E L+   ++   + ++V+ + R +YGQS S+   AGA+SLAG+ G LW+VEGGN  
Sbjct: 189 RSVAESLLQVGVTQRFIDDVVSAVLRASYGQSASMPAFAGAMSLAGAQGNLWSVEGGNKL 248

Query: 259 MAAGLINRSDVALHLHEEIESISYL----REYYEL--NSTKGNSYT-CQITVVATPLDEL 311
           + +GL+  +   + +H  + S++      +  Y++   S KGNS     I V+ATPL   
Sbjct: 249 VCSGLLKLAKATV-IHATVTSVTLHSTEGKALYQVAYESDKGNSSDFYDIVVIATPLHLD 307

Query: 312 NLH--------FSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDL 363
           N          F+PPI   +   Q T  + V G LN +YFG       P   A I   D 
Sbjct: 308 NSSNNNITFEGFTPPIEDIQGSFQPTVVSLVHGYLNSSYFGFPDPKLFP--FANILTTDF 365

Query: 364 P-FTCI-----------SVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGA 411
           P F C            S  ++  +    +++ S KP+  T L  +F          W A
Sbjct: 366 PSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTELKTLFRSYYSVQTAEWQA 425

Query: 412 YPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
           +P Y +      F L  + L+Y+NA E AAS++E +AVAA+NVA L  +R++
Sbjct: 426 HPLYGSRRTLPRFALHDQ-LFYLNALEWAASSVEVTAVAAKNVALLAYNRWY 476

Probable oxidoreductase.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: -

>sp|Q9CQF9|PCYOX_MOUSE Prenylcysteine oxidase OS=Mus musculus GN=Pcyox1 PE=1 SV=1

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 146/468 (31%), Positives = 223/468 (47%), Gaps = 48/468 (10%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           + I+G+GIGG+S A++LR+   K+   +I +FER  V GGR+AT+ + G  +EAG S++H
Sbjct: 37  IAIVGAGIGGTSSAYYLRKKFGKD--VKIDVFEREEV-GGRLATLKVQGHDYEAGGSVIH 93

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS 143
           P N H   F K L L     P+S      G+++G   VF+  S      FV  ++ L   
Sbjct: 94  PLNLHMKRFVKELGLS--SVPAS--GGLVGVYNGKSLVFEESSW-----FVINVIKL--- 141

Query: 144 VLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARS 200
              V RYG   LRM  + E  +DKF++ Y        F SV++++   G      L  ++
Sbjct: 142 ---VWRYGFQSLRMHMWVEDLLDKFMRIYRYQSHDYAFSSVEKLMHAIGGDDYVRLLNQT 198

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           L E L  A  S   + E++  + ++NYGQS  I+   GAVSL  +   LWAVEGGN  + 
Sbjct: 199 LRENLKKAGFSETFLNEMIAPVMKVNYGQSTDINAFVGAVSLTAADSNLWAVEGGNKIVC 258

Query: 261 AGLINRSD--------VALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLD 309
           +GL+  S         +++      +      + YE+    G   +S    I +VA PL+
Sbjct: 259 SGLLQASSSNLISGSVMSIEEKTRTKQTGNPTKMYEVVYKTGSETHSDFYDIVLVAAPLN 318

Query: 310 EL--NL---HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDL 363
               N+   +F PPI       Q    TF++G LN   F      +     +   +D D+
Sbjct: 319 RKMSNITFRNFDPPIEEFNDPYQQLVTTFIKGELNSTLFSSRPKDQFGLSAILVTDDSDM 378

Query: 364 PFTCISVLKQHDEND---------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPH 414
               +S++    + +           +K FSR  +T   +  +F      +R  W +YPH
Sbjct: 379 FINSLSIVASVRQKEGPPPAVDGMHVWKTFSRDILTKEQISKLFLSYDYAVRKPWLSYPH 438

Query: 415 YKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
           Y+ P+     IL  R LYY+N  E AAS ME SA+A  N A L   R+
Sbjct: 439 YEPPQKCPSIILHDR-LYYLNGIEFAASCMEMSAIAGYNAALLAYHRW 485

Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

>sp|Q0P5H1|PCYXL_BOVIN Prenylcysteine oxidase-like OS=Bos taurus GN=PCYOX1L PE=2 SV=1

 Score =  195 bits (496), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 141/471 (29%), Positives = 233/471 (49%), Gaps = 56/471 (11%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILM--FERNGVVGGRMATVTISGQTFEAGASI 81
           + ++G+GIGGS++AHFL+Q+    + PR+ +  FE+ G VGGR+AT++++ Q +E+GA+ 
Sbjct: 28  IAVVGAGIGGSAVAHFLQQH----FGPRVQIDVFEK-GTVGGRLATISVNKQHYESGAAS 82

Query: 82  LHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLA 141
            H  + H   F K L L+ +       +    I++G  FV +                L 
Sbjct: 83  FHSLSLHMQGFVKQLGLRHRREVGGRSA----IFNGENFVLEETDWY-----------LL 127

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTA 198
           N   +   YG+S LR++ + E  ++KF++ Y+       F  V+E+L   G     N+T 
Sbjct: 128 NLFRLWWHYGISFLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGESAFVNMTQ 187

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQ 258
           RS+ E L+   ++   + ++V+ + R +YGQS ++   AGA+SLAG+ G LW+VEGGN  
Sbjct: 188 RSVAESLLQVGVTQRFIDDVVSAVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKL 247

Query: 259 MAAGLINRSDVALHLHEEIESIS--------YLREYYELNSTKGNSYTCQITVVATPLDE 310
           + +GL+  +   + +H  + +++          R  YE N     S    I V+ATPL  
Sbjct: 248 VCSGLLKLTKANV-IHATVTTVTLQPTEGKPLYRVRYE-NEAGTGSDNYDIVVIATPLHL 305

Query: 311 LNLH------FSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLP 364
            N        F PPI + +   Q T  + V G LN +YFG       P   A I   D P
Sbjct: 306 DNSSTIAFEGFDPPIDVVQGSFQPTIVSLVHGYLNSSYFGFPDPKLFP--FANILTTDFP 363

Query: 365 -FTC-----------ISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAY 412
            F C            S  ++  +    +++ S +P+  + L  +F          W A+
Sbjct: 364 TFFCALDNICPVNISASFRRKQPQEAAVWRVQSPQPLLRSQLKTLFRSYYSVQTAEWQAH 423

Query: 413 PHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
           P   +P    P       L+++NA E AAS++E +AVAA+NVA L  +R++
Sbjct: 424 P-VHSPHTPLPRFTLHDQLFHLNALEWAASSVEVTAVAAKNVALLAFNRWY 473

Probable oxidoreductase.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: -

>sp|Q8NBM8|PCYXL_HUMAN Prenylcysteine oxidase-like OS=Homo sapiens GN=PCYOX1L PE=1 SV=2

 Score =  195 bits (495), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 143/471 (30%), Positives = 237/471 (50%), Gaps = 55/471 (11%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILM--FERNGVVGGRMATVTISGQTFEAGASI 81
           + ++G+GIGGS++AHFL+Q+    + PR+ +  +E+ G VGGR+AT++++ Q +E+GA+ 
Sbjct: 29  IAVVGAGIGGSAVAHFLQQH----FGPRVQIDVYEK-GTVGGRLATISVNKQHYESGAAS 83

Query: 82  LHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLA 141
            H  + H  +F KLL L+ +       +    I+ G  F+ +                L 
Sbjct: 84  FHSLSLHMQDFVKLLGLRHRREVVGRSA----IFGGEHFMLEETDWY-----------LL 128

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTA 198
           N   +   YG+S LR++ + E  ++KF++ Y+       F  V+E+L   G     N+T 
Sbjct: 129 NLFRLWWHYGISFLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGESTFVNMTQ 188

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQ 258
            S+ E L+   ++   + ++V+ + R +YGQS ++   AGA+SLAG+ G LW+VEGGN  
Sbjct: 189 HSVAESLLQVGVTQRFIDDVVSAVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKL 248

Query: 259 MAAGLINRSDVALHLHEEIESISYL----REYYEL---NSTKGNSYTCQITVVATPL--- 308
           + +GL+  +   + +H  + S++      +  Y++   N    +S    I V+ATPL   
Sbjct: 249 VCSGLLKLTKANV-IHATVTSVTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATPLHLD 307

Query: 309 -DELNLHFS---PPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLP 364
               NL F+   PPI   +   Q T  + V G LN +YFG       P   A I   D P
Sbjct: 308 NSSSNLTFAGFHPPIDDVQGSFQPTVVSLVHGYLNSSYFGFPDPKLFP--FANILTTDFP 365

Query: 365 -FTCI-----------SVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAY 412
            F C            S  ++  +    +++ S KP+  T L  +F          W A+
Sbjct: 366 SFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAEWQAH 425

Query: 413 PHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
           P Y +      F L  + L+Y+NA E AAS++E  AVAA+NVA L  +R++
Sbjct: 426 PLYGSRPTLPRFALHDQ-LFYLNALEWAASSVEVMAVAAKNVALLAYNRWY 475

Probable oxidoreductase.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: -

>sp|Q99ML5|PCYOX_RAT Prenylcysteine oxidase OS=Rattus norvegicus GN=Pcyox1 PE=1 SV=1

 Score =  189 bits (480), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 144/468 (30%), Positives = 224/468 (47%), Gaps = 49/468 (10%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           + I+G+GIGG+S A++LR+   K+   +I +FER  + GGR+AT+ + G  +EAG S++H
Sbjct: 37  IAIVGAGIGGTSSAYYLRKKFGKD--VKIDVFEREEI-GGRLATLKVQGHDYEAGGSVIH 93

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS 143
           P N H   F K L L     P+S      G+++G   VF+  S      F+  ++ L   
Sbjct: 94  PLNLHMKRFVKELGLS--SVPAS--GGLVGVYNGKSLVFEESSW-----FIINVIKL--- 141

Query: 144 VLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARS 200
              V RYG   LRM  + E  +DKF++ Y        F SV++++   G      L  ++
Sbjct: 142 ---VWRYGFQSLRMHMWVEDLLDKFMRIYRYQSHDYAFSSVEKLMYAIGGDDYVRLLNQT 198

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           L E L  A  S   + E++  + ++N+GQS  ++   GAVS+  +   LWAVEGGN  + 
Sbjct: 199 LRENLKKAGFSETFLNEMIAPVMKVNFGQSTDLNAFVGAVSMTAADSNLWAVEGGNKVVC 258

Query: 261 AGLINRSDVALHLHEEIESISYLR--------EYYELNSTKG---NSYTCQITVVATPLD 309
           +GL+  S+  L +   + SI   R        + YE+    G   +S    I +VA PL+
Sbjct: 259 SGLLQASNSNL-ISGSVMSIEKTRTKQTGTPPKMYEVVYKTGSEIHSDFYDIVLVAAPLN 317

Query: 310 EL--NL---HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDL 363
               N+   +F PPI       Q    T ++G LN   F      +     +   +D D+
Sbjct: 318 RKMSNITFRNFDPPIEEFNDPYQQLVTTLIKGELNSTLFSSRHKDQFGLSAILVTDDSDM 377

Query: 364 PFTCISVLK--QHDEND-------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPH 414
               +S++    H E           +K FS+  +T   +  +F      +R  W +YP+
Sbjct: 378 FINSLSIVASVSHKEGPPPAVDGMHVWKTFSKDILTKEQISKLFLSYDYAVRKPWLSYPY 437

Query: 415 YKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
           Y  P+     IL  R LYY+N  E AAS ME SA+A  N A L   R+
Sbjct: 438 YNPPQKCPSIILHDR-LYYLNGIEFAASCMEMSAIAGYNAALLAYHRW 484

Involved in the degradation of prenylated proteins. Cleaves the thioether bond of prenyl-L-cysteines, such as farnesylcysteine and geranylgeranylcysteine.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 3

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
356516383	507	PREDICTED: farnesylcysteine lyase-like [	0.950	0.913	0.711	0.0
255550566	495	conserved hypothetical protein [Ricinus	0.946	0.931	0.733	0.0
359480755	502	PREDICTED: farnesylcysteine lyase-like [	0.940	0.912	0.728	0.0
224093542	744	predicted protein [Populus trichocarpa]	0.985	0.645	0.664	0.0
449480838	499	PREDICTED: farnesylcysteine lyase-like [	0.944	0.921	0.704	0.0
357464747	1114	CCP [Medicago truncatula] gi|355491703|g	0.944	0.412	0.689	0.0
449457291	499	PREDICTED: farnesylcysteine lyase-like [	0.944	0.921	0.701	0.0
224109208	790	predicted protein [Populus trichocarpa]	0.950	0.586	0.671	0.0
15237560	500	prenylcysteine oxidase [Arabidopsis thal	0.915	0.892	0.667	1e-180
297797397	500	hypothetical protein ARALYDRAFT_496583 [	0.915	0.892	0.662	1e-180

>gi|356516383|ref|XP_003526874.1| PREDICTED: farnesylcysteine lyase-like [Glycine max]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/475 (71%), Positives = 399/475 (84%), Gaps = 12/475 (2%)

Query: 24  VCIIGSGIGGSSLAHFLRQYS-SKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASIL 82
           VC+IG+GIGGSS+AHFLR+YS S     +I +FERNG VGGR+ATVT++G+TFEAGASIL
Sbjct: 34  VCVIGAGIGGSSVAHFLRKYSPSSTPSTKIRVFERNGRVGGRIATVTVAGETFEAGASIL 93

Query: 83  HPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTIS-VSSTVP--------- 132
           HPKN HTV++ K+L LK K+P +SEDS + GIWDG+KFVFKT+S +SSTVP         
Sbjct: 94  HPKNLHTVDYVKILKLKVKEPTASEDSLSLGIWDGNKFVFKTVSPLSSTVPLIDKLLKLP 153

Query: 133 FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG 192
           FV  +VS  NS LM +RYG SL +M++F E AVDKF+KYYE   +RP+FE+VDEML+WAG
Sbjct: 154 FVNTLVSFVNSALMFVRYGFSLFKMQNFVEIAVDKFVKYYEDPGSRPIFETVDEMLQWAG 213

Query: 193 LFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAV 252
           L+NLT R+L +EL+DA LS  L+ ELVT+ITRINYGQS+S+SGL G VSLAGSGGGLW++
Sbjct: 214 LYNLTTRTLRDELVDAGLSTSLINELVTVITRINYGQSVSMSGLGGVVSLAGSGGGLWSI 273

Query: 253 EGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN 312
           EGGNWQMAAGLIN+SDVALHLHEEI+S++ L +YYELNSTKGNSY C++ VVATPLDEL+
Sbjct: 274 EGGNWQMAAGLINQSDVALHLHEEIKSVADLGDYYELNSTKGNSYRCEVAVVATPLDELD 333

Query: 313 LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLK 372
           + F PPISIPERKLQHT  TFVRG LNPAYFGL  V+KIP+LV TIEDP+LPF+CI+VLK
Sbjct: 334 IQFIPPISIPERKLQHTFTTFVRGLLNPAYFGLKAVTKIPDLVGTIEDPELPFSCIAVLK 393

Query: 373 QHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLY 432
           +H+E + TYK+FSR+PM DTLLD IFSVRKETIRINW AYPHY APEVFAPFILDGRHLY
Sbjct: 394 KHNEKESTYKLFSRQPMADTLLDSIFSVRKETIRINWAAYPHYHAPEVFAPFILDGRHLY 453

Query: 433 YVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLDL 487
           YVNAFENAASTMETSAVAAEN+ARLILSR+F +  V S NL  SS   E  HLDL
Sbjct: 454 YVNAFENAASTMETSAVAAENIARLILSRYFGQVIVHSSNLSASSQG-EGTHLDL 507

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550566|ref|XP_002516333.1| conserved hypothetical protein [Ricinus communis] gi|223544563|gb|EEF46080.1| conserved hypothetical protein [Ricinus communis]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/473 (73%), Positives = 393/473 (83%), Gaps = 12/473 (2%)

Query: 22  PTVCIIGSGIGGSSLAHFLRQYS---SKNWHPRILMFERNGVVGGRMATVTISGQTFEAG 78
           P +CIIGSGI GSSLAHFLR+YS   S +   RIL+FERNG+VGGRMATVTISG+TFEAG
Sbjct: 28  PNICIIGSGIAGSSLAHFLRRYSPPDSPSSAARILVFERNGLVGGRMATVTISGETFEAG 87

Query: 79  ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV 138
           ASILHPKNYH  NFT+LLNLK K P SSE S + GIWDG KFVFKTIS  S +PFVQKI+
Sbjct: 88  ASILHPKNYHASNFTRLLNLKRKAPSSSESSISLGIWDGKKFVFKTISCESKIPFVQKIL 147

Query: 139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTA 198
           S AN   M LRYG SL +M SF E  V+ FLKYYESF TRP+FE+VDEMLKWAGL++LT 
Sbjct: 148 SFANDFYMFLRYGFSLFKMSSFVEDTVNNFLKYYESFGTRPIFETVDEMLKWAGLYDLTT 207

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQ 258
           R+L++EL++  LS LL+QELVT+ITRINYGQS+ ISGLAGAVSLAGSGGGLWA+EGGNWQ
Sbjct: 208 RTLQDELVNVGLSTLLIQELVTVITRINYGQSVYISGLAGAVSLAGSGGGLWAIEGGNWQ 267

Query: 259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPP 318
           M  GLIN S+V LHL+EEI SISYL EYYELNSTKG SY C++ VVATPLDE N+ FSPP
Sbjct: 268 MVGGLINSSNVELHLYEEIHSISYLGEYYELNSTKG-SYPCEVAVVATPLDESNIQFSPP 326

Query: 319 ISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDEND 378
           ISIP+R+LQHTHATFVRG L+P YFGL  VS+IPELV T+EDP+LPF+ IS+LKQH++ D
Sbjct: 327 ISIPKRQLQHTHATFVRGLLSPEYFGLKAVSEIPELVGTLEDPELPFSSISILKQHNQTD 386

Query: 379 FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFE 438
            TYKIFSRK M+D+LLD IFS R+ETIRINWGAYP YKAPEVFAPFILDG +LYYVNAFE
Sbjct: 387 MTYKIFSRKAMSDSLLDSIFSGREETIRINWGAYPQYKAPEVFAPFILDGHNLYYVNAFE 446

Query: 439 NAASTMETSAVAAENVARLILSRF----FSKPSVTSLNLKTSSDAREELHLDL 487
           NAASTMETSAVAAENVARLILSR     FS PS    +  +S   RE LH DL
Sbjct: 447 NAASTMETSAVAAENVARLILSRISSEVFSDPS----DFMSSCSDREVLHSDL 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480755|ref|XP_002275222.2| PREDICTED: farnesylcysteine lyase-like [Vitis vinifera] gi|296082596|emb|CBI21601.3| unnamed protein product [Vitis vinifera]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/467 (72%), Positives = 397/467 (85%), Gaps = 9/467 (1%)

Query: 25  CIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHP 84
           CI+G GI GSS+AHFLR+YS       + +FER+GVVGGRMATV ++G+TFEAGASILHP
Sbjct: 41  CIVGGGISGSSVAHFLRRYSPHT-ALTLRIFERSGVVGGRMATVVLAGETFEAGASILHP 99

Query: 85  KNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSV 144
           KN+H VNFTK+LNL  K PPSSE S + GIWDG KFVFKT+  +S    VQ+IV++ NSV
Sbjct: 100 KNFHAVNFTKMLNLSVKTPPSSESSLSLGIWDGEKFVFKTLDSNSKSSIVQRIVAITNSV 159

Query: 145 LMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEE 204
           L+ +RYG SLL+M+SF ++ VD FLKYY SFE+RPVFE+VDEMLKWA L+NLTAR+L++E
Sbjct: 160 LLFVRYGFSLLKMDSFVQTTVDNFLKYYASFESRPVFETVDEMLKWADLYNLTARTLQDE 219

Query: 205 LIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLI 264
           L++A LSPLL++ELVT+ITRINYGQS+SISGLAGAVSLAGSGGGLW+VE GNWQ+ AGLI
Sbjct: 220 LVEAGLSPLLIEELVTVITRINYGQSVSISGLAGAVSLAGSGGGLWSVERGNWQIVAGLI 279

Query: 265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPER 324
           N SDV LH +EEIESISY  EYYELNSTKGNSY C++ V+ATPLDELN+HF+PPISIP+R
Sbjct: 280 NHSDVVLHRNEEIESISYHGEYYELNSTKGNSYKCEVAVIATPLDELNIHFNPPISIPKR 339

Query: 325 KLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIF 384
           KLQHTHATFVRG LNPAYFGL  VS+IPELV T+EDP+LPF+ ISVL++HDE D +YKIF
Sbjct: 340 KLQHTHATFVRGLLNPAYFGLVAVSEIPELVGTLEDPNLPFSSISVLRKHDEKDMSYKIF 399

Query: 385 SRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTM 444
           SRKPM D LLD IFS+RKETIRINWGAYPHY APEVFAPF+LDGRHLYYVNAFENAASTM
Sbjct: 400 SRKPMADVLLDRIFSLRKETIRINWGAYPHYSAPEVFAPFVLDGRHLYYVNAFENAASTM 459

Query: 445 ETSAVAAENVARLILSRF----FSKPSVTSLNLKTSSDAREELHLDL 487
           ETSAVAAEN+ARLILSR+     S PS    NLK+     E+LH DL
Sbjct: 460 ETSAVAAENIARLILSRYSGLMLSSPS----NLKSPGSDEEDLHSDL 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093542|ref|XP_002309934.1| predicted protein [Populus trichocarpa] gi|222852837|gb|EEE90384.1| predicted protein [Populus trichocarpa]

 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/504 (66%), Positives = 399/504 (79%), Gaps = 24/504 (4%)

Query: 7   LILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66
           L+L +   +       TVCIIGSGIGG+S+AHFLR++S+ N HP+IL+FER+ +VGGR+A
Sbjct: 242 LVLCLLPLEEAGGDGATVCIIGSGIGGASVAHFLRRHST-NHHPKILIFERHAIVGGRIA 300

Query: 67  TVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTIS 126
           +VTI G  FEAGASILHPKNYH  N+T  LNL  K P SSE S + GIWDG+ FV KT++
Sbjct: 301 SVTIGGDAFEAGASILHPKNYHASNYTNFLNLTRKRPSSSEGSFSLGIWDGNGFVVKTLN 360

Query: 127 VSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDE 186
           + S    V KIVS  N V + +RYG SL++M+ F +  V+KFLKYYE  ETRPVFESV+E
Sbjct: 361 LKSKWGIVNKIVSFFNGVSLFMRYGFSLVKMKGFVDETVNKFLKYYEGVETRPVFESVEE 420

Query: 187 MLKWAGLFNLTARSLEEELIDA-RLSPLLMQELVTI---------------------ITR 224
           MLKWAGLFNLT +SL+EEL+D  +L+PLL++ELVT+                     ITR
Sbjct: 421 MLKWAGLFNLTGKSLKEELVDGVKLAPLLIKELVTVRWLIYPITSDINCHFGLADVVITR 480

Query: 225 INYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLR 284
           +NYGQ ++ISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLIN SDV L+LHEEI+SISYL 
Sbjct: 481 VNYGQGVNISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINSSDVELYLHEEIDSISYLG 540

Query: 285 EYYELNSTKGNSYTCQITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFG 344
           EYYELNSTKGN+Y+C++ VVATPLDE ++ FSPP+S+P R+LQHTHATFVRG +NP YFG
Sbjct: 541 EYYELNSTKGNAYSCEVAVVATPLDESSIQFSPPVSVPVRQLQHTHATFVRGLVNPVYFG 600

Query: 345 LDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKET 404
           L  VS+IPELVATIEDP LPFT IS+LK ++E D TYKIFSR+ MTD LLD IFSVRKET
Sbjct: 601 LKAVSEIPELVATIEDPRLPFTSISILKCYNETDMTYKIFSRQAMTDALLDSIFSVRKET 660

Query: 405 IRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFS 464
           ++INWGAYPHYKAPE FAPFILDG+HLYYVNAFENAAST+ETSAVAAEN+ARLILSRFF 
Sbjct: 661 VQINWGAYPHYKAPERFAPFILDGKHLYYVNAFENAASTVETSAVAAENIARLILSRFFG 720

Query: 465 KPSVTSLNLK-TSSDAREELHLDL 487
           K S    +LK TS  + E LH D+
Sbjct: 721 KDSSCPSDLKRTSCSSAEALHSDM 744

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480838|ref|XP_004156010.1| PREDICTED: farnesylcysteine lyase-like [Cucumis sativus]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/473 (70%), Positives = 390/473 (82%), Gaps = 13/473 (2%)

Query: 24  VCIIGSGIGGSSLAHFLRQYS-----SKNWHPRILMFERNGVVGGRMATVTISGQTFEAG 78
           VCIIGSGIG SS++HFLRQY+     S +++ R  MFER+ +VGGRMATV I+G TFEAG
Sbjct: 31  VCIIGSGIGASSVSHFLRQYAPSYNVSTDFNIR--MFERHNIVGGRMATVNIAGDTFEAG 88

Query: 79  ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTIS--VSSTVPFVQK 136
           ASILHPKN H + FT+LLNL  K P SS  S + GIWDG KFVF+T++  ++STVPFV K
Sbjct: 89  ASILHPKNLHALRFTELLNLTVKKP-SSSGSFSLGIWDGHKFVFRTLTSGLTSTVPFVDK 147

Query: 137 IVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNL 196
           IV L N ++M LRYG SLLRME F E AV+KF KYYE FE+RP+FE+V+EML W+GL+ L
Sbjct: 148 IVDLWNQLVMFLRYGFSLLRMEEFVEGAVEKFSKYYEGFESRPIFETVNEMLNWSGLYKL 207

Query: 197 TARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGN 256
           T R+L EELIDARLS LL+QELVT+ITRINYGQS+SISGLAGAVSLAGSGGGLW+VEGGN
Sbjct: 208 TTRTLYEELIDARLSHLLIQELVTVITRINYGQSVSISGLAGAVSLAGSGGGLWSVEGGN 267

Query: 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFS 316
           WQMAA LIN SD  LHL EEI+SISY  EYYE+ S KGN+Y+C++TVVATPLDE+N+ F+
Sbjct: 268 WQMAARLINHSDSTLHLEEEIKSISYRGEYYEVMSNKGNNYSCEVTVVATPLDEVNIQFT 327

Query: 317 PPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDE 376
           PPI IP+R+LQHTH TFVRG LNP YFGL   SK+P+LV T+E  ++ F+ ISVLKQHDE
Sbjct: 328 PPIIIPKRELQHTHTTFVRGLLNPVYFGLKASSKLPKLVGTMETENVQFSSISVLKQHDE 387

Query: 377 NDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNA 436
           ND TYKIFSRKPM DTLLD IFS+RKETIRI+W AYPH+KAPEVFAPFILDG+HLYYVNA
Sbjct: 388 NDMTYKIFSRKPMEDTLLDKIFSIRKETIRIDWAAYPHFKAPEVFAPFILDGQHLYYVNA 447

Query: 437 FENAASTMETSAVAAENVARLILSRFFSKPSVTSL--NLKTSSDAREELHLDL 487
           FEN ASTMETSAVAAEN+ARL+LSRF +K    SL  NL +  DA   LH+DL
Sbjct: 448 FENGASTMETSAVAAENIARLVLSRFLAKVGHDSLHFNLDSGLDA-SPLHIDL 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464747|ref|XP_003602655.1| CCP [Medicago truncatula] gi|355491703|gb|AES72906.1| CCP [Medicago truncatula]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/476 (68%), Positives = 396/476 (83%), Gaps = 16/476 (3%)

Query: 23   TVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVVGGRMATVTISGQTFEAGAS 80
            TVCIIG+GIGGSS+AHF+R+YS  +  P  +I +FERN +VGGR+ATV ++G+TFEAGAS
Sbjct: 644  TVCIIGAGIGGSSVAHFIRKYSP-DLTPTTKIRVFERNTIVGGRIATVNVAGETFEAGAS 702

Query: 81   ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP-------- 132
            ILHPKN H VN+TKLLNLK ++P S     +  IWDG+KFVFKTI +SS +P        
Sbjct: 703  ILHPKNLHAVNYTKLLNLKAREPSSG---FSLAIWDGNKFVFKTIEISSNLPLFDKLLKL 759

Query: 133  -FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWA 191
             F++ +VSL NS LM +RYG SL +M++F +SAV  F KYYE   +RP+FE+VDEMLKWA
Sbjct: 760  PFIENLVSLVNSGLMFVRYGFSLFKMQNFVQSAVGSFSKYYEDTGSRPIFETVDEMLKWA 819

Query: 192  GLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWA 251
            GLFNLT R+L++EL+DA LSPLL+ ELVT+ITRINYGQS+ +SGL GAVSLAGSGGGLW+
Sbjct: 820  GLFNLTTRTLQDELVDAGLSPLLINELVTVITRINYGQSVYMSGLGGAVSLAGSGGGLWS 879

Query: 252  VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL 311
            +EGGN QMA GLI+RSDVALHL+E I+S++ L ++YELNSTKGN+Y C++ VVATPLDE+
Sbjct: 880  IEGGNRQMAVGLIDRSDVALHLNEGIKSVADLGDHYELNSTKGNNYICEVAVVATPLDEI 939

Query: 312  NLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVL 371
            N+ F PPISIPERKLQHTHATFVRG LNP YFGL   +KIP+LVAT+EDP+LPFT ISVL
Sbjct: 940  NIQFIPPISIPERKLQHTHATFVRGLLNPVYFGLKATAKIPDLVATLEDPELPFTSISVL 999

Query: 372  KQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHL 431
            K+H+E + TYKIFSRKPM DTLL+ IFSVRKETIRI+W AYP Y APE+FAPFILDGR+L
Sbjct: 1000 KKHNEEESTYKIFSRKPMADTLLNSIFSVRKETIRIDWAAYPQYHAPEIFAPFILDGRNL 1059

Query: 432  YYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLDL 487
            YYVNAFENAASTMETSAV+AEN+ARLILSR+F K SV S NLK SS   E+ HL+L
Sbjct: 1060 YYVNAFENAASTMETSAVSAENIARLILSRYFGKVSVHSSNLKASSQ-EEDAHLEL 1114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457291|ref|XP_004146382.1| PREDICTED: farnesylcysteine lyase-like [Cucumis sativus]

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/473 (70%), Positives = 389/473 (82%), Gaps = 13/473 (2%)

Query: 24  VCIIGSGIGGSSLAHFLRQYS-----SKNWHPRILMFERNGVVGGRMATVTISGQTFEAG 78
           VCIIGSGIG SS++HFLRQY+     S +++ R  MFER+ +VGGRMATV I+G TFEAG
Sbjct: 31  VCIIGSGIGASSVSHFLRQYAPSYNVSTDFNIR--MFERHNIVGGRMATVNIAGDTFEAG 88

Query: 79  ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTIS--VSSTVPFVQK 136
           ASILHPKN H + FT+LLNL  K P SS  S + GIWDG KFVF+T++  ++STVPFV K
Sbjct: 89  ASILHPKNLHALGFTELLNLTVKKP-SSSGSFSLGIWDGHKFVFRTLTSGLTSTVPFVDK 147

Query: 137 IVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNL 196
           IV L N ++M LRYG SLLRME F E AV+KF KYYE FE+RPVFE+V+EML W+GL+ L
Sbjct: 148 IVDLWNQLVMFLRYGFSLLRMEEFVEGAVEKFSKYYEGFESRPVFETVNEMLNWSGLYKL 207

Query: 197 TARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGN 256
           T R+L EELIDARLS LL+QELVT+ITRINYGQS+SISGLAGAVSLAGSGGGLW+VEGGN
Sbjct: 208 TTRTLYEELIDARLSHLLIQELVTVITRINYGQSVSISGLAGAVSLAGSGGGLWSVEGGN 267

Query: 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFS 316
           WQMAA LIN SD  LHL EEI+SISY  EYYE+ S KGN+Y+C++TVVATPLDE+N+ F+
Sbjct: 268 WQMAARLINHSDSTLHLEEEIKSISYRGEYYEVMSNKGNNYSCEVTVVATPLDEVNIQFT 327

Query: 317 PPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDE 376
           PPI IP+R+LQHTH TFVRG LNP YFGL   SK+P+LV T E  ++ F+ ISVLKQHDE
Sbjct: 328 PPIIIPKRELQHTHTTFVRGLLNPVYFGLKASSKLPKLVGTTETENVQFSSISVLKQHDE 387

Query: 377 NDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNA 436
           ND TYKIFSRKPM DTLLD IFS+RKETIRI+W AYPH+KAPEVFAPFILDG+HLYYVNA
Sbjct: 388 NDMTYKIFSRKPMEDTLLDKIFSIRKETIRIDWAAYPHFKAPEVFAPFILDGQHLYYVNA 447

Query: 437 FENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSS--DAREELHLDL 487
           FEN AST+ETSA+AAEN+ARL+LSRF +K    SL+ K  S  DA   LH+DL
Sbjct: 448 FENGASTIETSAIAAENIARLVLSRFLAKVGHDSLHFKLDSGLDA-SPLHIDL 499

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109208|ref|XP_002333295.1| predicted protein [Populus trichocarpa] gi|222835908|gb|EEE74329.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1733), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/487 (67%), Positives = 390/487 (80%), Gaps = 24/487 (4%)

Query: 23  TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASIL 82
           +VCIIGSGIGG+S+AHFLR++S+ N HP+IL+FER+ +VGGR+A+VTI G  FEAGASIL
Sbjct: 304 SVCIIGSGIGGASVAHFLRRHST-NHHPKILIFERHAIVGGRIASVTIGGDAFEAGASIL 362

Query: 83  HPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLAN 142
           HPKNYH  N+T  LNL  K P SSE S + GIWDG+ FV KT+++ S    V KIVS  N
Sbjct: 363 HPKNYHASNYTNFLNLTRKRPSSSEGSFSLGIWDGNGFVVKTLNLKSKWGIVNKIVSFFN 422

Query: 143 SVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLE 202
            V + +RYG SL++M+ F +  V+KFLKYYE  ETRPVFESV+EMLKWAGLFNLT +SL+
Sbjct: 423 GVSLFMRYGFSLVKMKGFVDETVNKFLKYYEGVETRPVFESVEEMLKWAGLFNLTGKSLK 482

Query: 203 EELIDA-RLSPLLMQELVTI---------------------ITRINYGQSLSISGLAGAV 240
           EEL+D  +L+PLL++ELVT+                     ITR+NYGQ ++ISGLAGAV
Sbjct: 483 EELVDGVKLAPLLIKELVTVRWLIYPITSDINCHFGLADVVITRVNYGQGVNISGLAGAV 542

Query: 241 SLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQ 300
           SLAGSG G+WAVEGGNWQ+AAGLIN SDV L+LHEEI+SISYL EYYELNSTKGN+Y+C+
Sbjct: 543 SLAGSGRGVWAVEGGNWQIAAGLINSSDVELYLHEEIDSISYLGEYYELNSTKGNAYSCE 602

Query: 301 ITVVATPLDELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIED 360
           + VVATPLDE ++ FSPP+S+P R+LQHTHATFVRG +NP YFGL  VS+IPELVATIED
Sbjct: 603 VAVVATPLDESSIQFSPPVSVPVRQLQHTHATFVRGLVNPVYFGLKAVSEIPELVATIED 662

Query: 361 PDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEV 420
           P LPFT IS+LK ++E D TYKIFSR+ MTD LLD IFSVRKET++INWGAYPHYKAPE 
Sbjct: 663 PRLPFTSISILKCYNETDMTYKIFSRQAMTDALLDSIFSVRKETVQINWGAYPHYKAPEK 722

Query: 421 FAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLNLK-TSSDA 479
           FAPFILDG+HLYYVNAFEN AST+ETSAVAAEN+ARLILSRFF K S     +K TS  +
Sbjct: 723 FAPFILDGKHLYYVNAFENVASTVETSAVAAENIARLILSRFFGKDSSCPSAIKRTSCSS 782

Query: 480 REELHLD 486
            E LH D
Sbjct: 783 AEALHSD 789

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237560|ref|NP_201196.1| prenylcysteine oxidase [Arabidopsis thaliana] gi|12644543|sp|P57681.1|PCYOX_ARATH RecName: Full=Farnesylcysteine lyase; Flags: Precursor gi|10177679|dbj|BAB11039.1| unnamed protein product [Arabidopsis thaliana] gi|19698817|gb|AAL91144.1| unknown protein [Arabidopsis thaliana] gi|22136076|gb|AAM91116.1| unknown protein [Arabidopsis thaliana] gi|332010432|gb|AED97815.1| prenylcysteine oxidase [Arabidopsis thaliana]

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 299/448 (66%), Positives = 365/448 (81%), Gaps = 2/448 (0%)

Query: 23  TVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGGRMATVTISGQTFEAGAS 80
           TVCI+GSGIGGSS+AHFLR YS        +ILMFER+ +VGGRM TVT++G TFEAG S
Sbjct: 37  TVCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFEAGGS 96

Query: 81  ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSL 140
           ILHPKNYH  +F +  NL  + P   E+S+A GIWDG +FV KT    +  PF+  IVS 
Sbjct: 97  ILHPKNYHVKDFVERFNLTVRLPTPIEESSAIGIWDGKRFVVKTFGSGTKFPFLDTIVSW 156

Query: 141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
            N + + LRYGLSLLRM SF E+ VD FLKYYES E+RP+F++V+ MLKW+GL+NLT  +
Sbjct: 157 VNDLYLFLRYGLSLLRMSSFIENTVDNFLKYYESLESRPIFDNVEGMLKWSGLYNLTKLT 216

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           L+E+L +A+LSPLL+ ELVT+ITRINYGQS+ ISGLAGAVSLAGSGGGLW+VEGGNWQMA
Sbjct: 217 LQEKLSEAQLSPLLVNELVTVITRINYGQSVLISGLAGAVSLAGSGGGLWSVEGGNWQMA 276

Query: 261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPIS 320
           A LIN SDV LHL+E+IESISYL  +YEL STKGNSY C +TVVATPLDE+++ FSP IS
Sbjct: 277 AKLINHSDVTLHLNEKIESISYLENHYELKSTKGNSYKCDVTVVATPLDEVDIQFSPTIS 336

Query: 321 IPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFT 380
           IP+R+LQHTH TFVRG LNP YFG+  +S +P LV T+EDP +PF+CIS+L+++ + D T
Sbjct: 337 IPKRELQHTHTTFVRGLLNPGYFGMKSLSDVPALVGTLEDPLIPFSCISILRKYSKTDMT 396

Query: 381 YKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENA 440
           YKIF+R+P +D+LLD++FS R ET+RI+WGAYP Y APEVFAPFILD  HLYYVNAFENA
Sbjct: 397 YKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDDHHLYYVNAFENA 456

Query: 441 ASTMETSAVAAENVARLILSRFFSKPSV 468
           ASTMETSAVA EN+ARLI+SRF +K S+
Sbjct: 457 ASTMETSAVAGENIARLIISRFMTKESL 484

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797397|ref|XP_002866583.1| hypothetical protein ARALYDRAFT_496583 [Arabidopsis lyrata subsp. lyrata] gi|297312418|gb|EFH42842.1| hypothetical protein ARALYDRAFT_496583 [Arabidopsis lyrata subsp. lyrata]

 Score =  637 bits (1643), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 297/448 (66%), Positives = 365/448 (81%), Gaps = 2/448 (0%)

Query: 19  QQEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGGRMATVTISGQTFE 76
           +  PTVCI+GSGIGGSS+AHFLR YS        +ILMFER+ +VGGRM TVT++G TFE
Sbjct: 33  ESPPTVCIVGSGIGGSSVAHFLRNYSVSTGLNRAKILMFERHEIVGGRMRTVTVAGDTFE 92

Query: 77  AGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQK 136
           AG SILHPKNYH  +F +  NL  + P   E+S+A GIWDG KFV KT    +  PF+  
Sbjct: 93  AGGSILHPKNYHVKDFVERFNLTVRLPTPIEESSAIGIWDGKKFVVKTFGSGTKFPFLDT 152

Query: 137 IVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNL 196
           IVS  N + + LRYG SLLRM SF E+ VD FLKYYES E+RP+F++V+ MLKW+GL+NL
Sbjct: 153 IVSWVNDLYLFLRYGFSLLRMSSFIENTVDNFLKYYESLESRPIFDNVEGMLKWSGLYNL 212

Query: 197 TARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGN 256
           T  +L+E+L +A+LSPLL+ ELVT+ITRINYGQS+ ISGLAGAVSLAGSGGGLW+VEGGN
Sbjct: 213 TKLTLQEKLSEAQLSPLLVNELVTVITRINYGQSVLISGLAGAVSLAGSGGGLWSVEGGN 272

Query: 257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFS 316
           WQMAA LIN SD+ LHL+E+IESIS+L  +YELNSTKGNSY C +TVVATPLDE+++ FS
Sbjct: 273 WQMAAKLINHSDITLHLNEKIESISHLGNHYELNSTKGNSYKCDVTVVATPLDEVDIQFS 332

Query: 317 PPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDE 376
           P ISIP+R+LQHTHATFVRG LNP YFG+  +S +P L+ T+EDP +PF+CIS+L+++ +
Sbjct: 333 PAISIPKRELQHTHATFVRGLLNPGYFGMKSLSDVPALLGTLEDPLIPFSCISILRKYSK 392

Query: 377 NDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNA 436
            D TYKIF+R+P +D+LLD++FS R ET+RI+WGAYP Y APEVFAPFILD  HLYYVNA
Sbjct: 393 TDMTYKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDDHHLYYVNA 452

Query: 437 FENAASTMETSAVAAENVARLILSRFFS 464
           FENAASTMETSAVA EN+ARLI+SRF +
Sbjct: 453 FENAASTMETSAVAGENIARLIISRFMT 480

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:2163966	500	FCLY "farnesylcysteine lyase"	0.946	0.922	0.592	9e-148
ZFIN|ZDB-GENE-050417-98	509	pcyox1 "prenylcysteine oxidase	0.593	0.567	0.319	9.1e-45
UNIPROTKB|E2R1N7	505	PCYOX1 "Uncharacterized protei	0.835	0.805	0.318	1.3e-43
UNIPROTKB|Q9UHG3	505	PCYOX1 "Prenylcysteine oxidase	0.833	0.803	0.320	5.7e-43
UNIPROTKB|F1N2K1	508	PCYOX1 "Uncharacterized protei	0.829	0.795	0.305	1.6e-40
UNIPROTKB|I3L9F5	513	PCYOX1 "Uncharacterized protei	0.829	0.787	0.305	1.4e-39
MGI|MGI:3606062	495	Pcyox1l "prenylcysteine oxidas	0.833	0.820	0.288	2.4e-37
RGD|1563290	494	Pcyox1l "prenylcysteine oxidas	0.833	0.821	0.284	4.9e-37
RGD|1595324	494	LOC682714 "similar to chloride	0.833	0.821	0.284	4.9e-37
MGI|MGI:1914131	505	Pcyox1 "prenylcysteine oxidase	0.835	0.805	0.290	1e-36

TAIR|locus:2163966 FCLY "farnesylcysteine lyase" [Arabidopsis thaliana (taxid:3702)]

 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 276/466 (59%), Positives = 343/466 (73%)

Query:    23 TVCXXXXXXXXXXLAHFLRQYSSKNW--HPRILMFERNGVVGGRMATVTISGQTFEAGAS 80
             TVC          +AHFLR YS        +ILMFER+ +VGGRM TVT++G TFEAG S
Sbjct:    37 TVCIVGSGIGGSSVAHFLRNYSVSTGLNQAKILMFERHEIVGGRMRTVTVAGDTFEAGGS 96

Query:    81 ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSL 140
             ILHPKNYH  +F +  NL  + P   E+S+A GIWDG +FV KT    +  PF+  IVS 
Sbjct:    97 ILHPKNYHVKDFVERFNLTVRLPTPIEESSAIGIWDGKRFVVKTFGSGTKFPFLDTIVSW 156

Query:   141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
              N + + LRYGLSLLRM SF E+ VD FLKYYES E+RP+F++V+ MLKW+GL+NLT  +
Sbjct:   157 VNDLYLFLRYGLSLLRMSSFIENTVDNFLKYYESLESRPIFDNVEGMLKWSGLYNLTKLT 216

Query:   201 LEEELIDARLSPLLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMA 260
             L+E+L +A+LSPLL+ ELVT+ITRINYGQ                      VEGGNWQMA
Sbjct:   217 LQEKLSEAQLSPLLVNELVTVITRINYGQSVLISGLAGAVSLAGSGGGLWSVEGGNWQMA 276

Query:   261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFSPPIS 320
             A LIN SDV LHL+E+IESISYL  +YEL STKGNSY C +TVVATPLDE+++ FSP IS
Sbjct:   277 AKLINHSDVTLHLNEKIESISYLENHYELKSTKGNSYKCDVTVVATPLDEVDIQFSPTIS 336

Query:   321 IPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFT 380
             IP+R+LQHTH TFVRG LNP YFG+  +S +P LV T+EDP +PF+CIS+L+++ + D T
Sbjct:   337 IPKRELQHTHTTFVRGLLNPGYFGMKSLSDVPALVGTLEDPLIPFSCISILRKYSKTDMT 396

Query:   381 YKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFENA 440
             YKIF+R+P +D+LLD++FS R ET+RI+WGAYP Y APEVFAPFILD  HLYYVNAFENA
Sbjct:   397 YKIFTRQPASDSLLDELFSRRTETVRIDWGAYPKYHAPEVFAPFILDDHHLYYVNAFENA 456

Query:   441 ASTMETSAVAAENVARLILSRFFSKPSVTSLNLKTSSDAREELHLD 486
             ASTMETSAVA EN+ARLI+SRF +K S++S + ++ S     LH D
Sbjct:   457 ASTMETSAVAGENIARLIISRFMTKESLSSSDKRSCSSG---LHSD 499

GO:0005576 "extracellular region" evidence=ISM

GO:0016670 "oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0001735 "prenylcysteine oxidase activity" evidence=IDA

GO:0030327 "prenylated protein catabolic process" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

ZFIN|ZDB-GENE-050417-98 pcyox1 "prenylcysteine oxidase 1" [Danio rerio (taxid:7955)]

 Score = 329 (120.9 bits), Expect = 9.1e-45, Sum P(2) = 9.1e-45
 Identities = 105/329 (31%), Positives = 157/329 (47%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A FLRQ        +I +FE  G VGGR+AT  I G  +E G SI+HP N H  +F   L
Sbjct:    50 AFFLRQEFGPA--VKIEVFEA-GTVGGRLATENIGGHEYETGGSIIHPLNLHMKHFLDKL 106

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L  +   SS+      I+DG +  F+           +    L N + M+ RYGL+ +R
Sbjct:   107 GLSVRADVSSK----MAIFDGKELTFE-----------ESDWYLVNVIRMLWRYGLNFIR 151

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPL 213
             M  + E  +DKF++ Y+  +    F SV++ML   G      L  ++LEE ++    S +
Sbjct:   152 MHMWVEGILDKFMRIYQYQQFSYSFSSVEKMLHAMGGDSFLTLVNQTLEEAMLAEGFSQV 211

Query:   214 LMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLI--NRSDV-- 269
              + ++VT +TR+NYGQ                      V+GGN  + +GL+  ++++V  
Sbjct:   212 FLNDIVTPVTRVNYGQTVRINGFVGAVSLAGASSGLWAVDGGNKLVCSGLLYHSKAEVVP 271

Query:   270 ----ALHLHEEIESISYLREYYELN--STKGNSY-TCQITVVATPL----DELNLH-FSP 317
                 A+ +         +  +YE+N     G ++ T  I VVATPL     ++N   FSP
Sbjct:   272 ARVTAISMKTRPSKTGPVTSFYEVNYIGESGAAHSTYDIVVVATPLHQGLSDINFSGFSP 331

Query:   318 PIS--IPERKLQHTHATFVRGALNPAYFG 344
             PI    P R  Q T AT V G LN +Y G
Sbjct:   332 PIPSHFPGRYHQ-TVATLVHGLLNLSYLG 359

GO:0016670 "oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor" evidence=IEA

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|E2R1N7 PCYOX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 145/455 (31%), Positives = 213/455 (46%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A++LRQ   K+   +I +FER G VGGR+ATVT+ GQ +EAG S++HP N H   F K L
Sbjct:    50 AYYLRQKFGKD--VKIDVFER-GEVGGRLATVTVRGQEYEAGGSVIHPLNLHMKRFVKDL 106

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L      SS      G+++G   VF+  S      F+  ++ L      +  YG   LR
Sbjct:   107 GLSTVQ--SS--GGLLGVYNGETLVFEESSW-----FIMNMIKL------IWHYGFQSLR 151

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPL 213
             M  + E  +DKF++ Y        F SV+ +L   G      +  R+L E L  A  S  
Sbjct:   152 MHMWVEDILDKFMRIYRYQSHDYAFSSVERLLHSLGGDEFLGMLNRTLLETLQKAGFSEK 211

Query:   214 LMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLI--NRSDV-- 269
              + E+V  + R+NYGQ                      V+GGN  + +GL+  +RS++  
Sbjct:   212 FLDEIVAPVMRVNYGQSMNINGFVGAVSMSCADSGLWAVQGGNKLVCSGLLRASRSNLIA 271

Query:   270 --ALHLHEEIES--ISYLREYYELNSTKG---NSYTCQITVVATPLDEL--N---LHFSP 317
                L++ E+  +       + YE+    G    S    I +VATPL+    N   L+F P
Sbjct:   272 GSVLYIEEKTRTKHTGNPAKMYEVIYQSGPETRSDFYDIVLVATPLNRKMSNITFLNFDP 331

Query:   318 PISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVLKQHDE 376
             PI    +  QH   T ++G LN   F    + K     + T ++ DL    I ++    E
Sbjct:   332 PIEEFHQYYQHIVTTLIKGQLNSTLFSSRALDKFDLSTILTTDNSDLFINSIGIVSSVTE 391

Query:   377 ND---------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILD 427
             ND         + +KIFS++ +T   +  +F      ++  W AYPHY+ PE     IL 
Sbjct:   392 NDSPQPLGDRGYVWKIFSQEILTKEQILKLFLSYDYAVKQPWLAYPHYRPPEKCPSIILH 451

Query:   428 GRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
              R LYY+N  E AAS ME SA+AA N A L   R+
Sbjct:   452 DR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

UNIPROTKB|Q9UHG3 PCYOX1 "Prenylcysteine oxidase 1" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 146/456 (32%), Positives = 216/456 (47%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A++LRQ   K+   +I +FER  V GGR+AT+ + GQ +EAG S++HP N H   F K L
Sbjct:    50 AYYLRQKFGKD--VKIDLFEREEV-GGRLATMMVQGQEYEAGGSVIHPLNLHMKRFVKDL 106

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L              GI++G   VF+  +      F+  ++ L      V RYG   LR
Sbjct:   107 GLSAVQASGG----LLGIYNGETLVFEESNW-----FIINVIKL------VWRYGFQSLR 151

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPL 213
             M  + E  +DKF++ Y        F SV+++L   G      +  R+L E L  A  S  
Sbjct:   152 MHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGMLNRTLLETLQKAGFSEK 211

Query:   214 LMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLI--NRSDV-- 269
              + E++  + R+NYGQ                      VEGGN  + +GL+  ++S++  
Sbjct:   212 FLNEMIAPVMRVNYGQSTDINAFVGAVSLSCSDSGLWAVEGGNKLVCSGLLQASKSNLIS 271

Query:   270 --ALHLHEEIESISYL---REYYELN---STKGNSYTCQITVVATPLDEL--N---LHFS 316
                +++ E+ ++  Y     + YE+     T+  S    I +VATPL+    N   L+F 
Sbjct:   272 GSVMYIEEKTKT-KYTGNPTKMYEVVYQIGTETRSDFYDIVLVATPLNRKMSNITFLNFD 330

Query:   317 PPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVL---- 371
             PPI    +  QH   T V+G LN + F    + K     V T ++ DL    I ++    
Sbjct:   331 PPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLTTDNSDLFINSIGIVPSVR 390

Query:   372 -KQHDE--NDFTY--KIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFIL 426
              K+  E   D TY  KIFS++ +T   +  +F      ++  W AYPHYK PE     IL
Sbjct:   391 EKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDYAVKKPWLAYPHYKPPEKCPSIIL 450

Query:   427 DGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
               R LYY+N  E AAS ME SA+AA N A L   R+
Sbjct:   451 HDR-LYYLNGIECAASAMEMSAIAAHNAALLAYHRW 485

GO:0005886 "plasma membrane" evidence=IEA

GO:0008555 "chloride-transporting ATPase activity" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IDA;NAS

GO:0030329 "prenylcysteine metabolic process" evidence=NAS

GO:0005764 "lysosome" evidence=IDA

GO:0001735 "prenylcysteine oxidase activity" evidence=IDA

GO:0034361 "very-low-density lipoprotein particle" evidence=IDA

UNIPROTKB|F1N2K1 PCYOX1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 140/458 (30%), Positives = 215/458 (46%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A++LRQ   K+   +I +FE+ G VGGR+AT+ + GQ FE+G S++HP N H   F K L
Sbjct:    53 AYYLRQKFGKD--VKIDVFEK-GKVGGRLATLNVQGQEFESGGSVIHPLNLHMKRFVKDL 109

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L     PS       G+++G   V++  S      F+       N + ++  YG   LR
Sbjct:   110 GLSAVQSPSG----LVGVYNGETLVYEESSW-----FI------INMIKLIWHYGFQSLR 154

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLK------WAGLFNLTARSLEEELIDARL 210
             M  + E  +DKF++ Y        F SV+++L       + GLFN   RSL E L  A  
Sbjct:   155 MHMWVEDILDKFMRIYRYQSHDYAFSSVEKLLHSLGGDDYLGLFN---RSLLETLQKAGF 211

Query:   211 SPLLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLI--NRSD 268
             S   + E++T + R+NYGQ                      V+GGN  + + L+  +RS+
Sbjct:   212 SEKFLDEIITPVMRVNYGQTTNINGFVGAVSMAGTDPGLWAVKGGNKLVCSRLLQASRSN 271

Query:   269 VALHLHEEIESISYLRE------YYEL---NSTKGNSYTCQITVVATPLDE----LN-LH 314
             +   L   IE  +  ++       YE+     ++ +S    I +VATPL+     +N L+
Sbjct:   272 LVSGLVMSIEEKTRTKQTGNPSKVYEVVYQTGSETHSDFYDIVLVATPLNRKMSNINFLN 331

Query:   315 FSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVLK- 372
             F PPI    +  +    T ++G LN   F    +++     V T ++PDL    I ++  
Sbjct:   332 FDPPIEEFHQHYEPLVTTLIKGELNSTVFSSRALNEFHLGTVLTTDNPDLFINSIGLVSP 391

Query:   373 -QHDEND-------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPF 424
              + D N          +KIFS   +T   +  +F      ++ +W AYPHY  PE     
Sbjct:   392 VEEDNNPQPKADTAHVWKIFSAAALTKEQILKLFVSYDYAVKQSWLAYPHYTPPEKCPSI 451

Query:   425 ILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
             IL  + LYY+N  E AAS ME SA+A  N A L   R+
Sbjct:   452 ILHDQ-LYYLNGIEFAASAMEMSAIAGYNAALLAYHRW 488

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

UNIPROTKB|I3L9F5 PCYOX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 140/458 (30%), Positives = 215/458 (46%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A++LRQ   K+   +I +FE+ G VGGR+AT+T+ GQ +E+G SI+HP N H   F K L
Sbjct:    58 AYYLRQKFGKD--VKIDVFEK-GEVGGRLATLTMQGQEYESGGSIIHPLNLHMKRFVKDL 114

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L     PS       G+++G   V++  S      F+       N + ++  YG   LR
Sbjct:   115 GLSAVQSPSG----LVGVYNGETLVYEESSW-----FI------INMIKLIWYYGFQSLR 159

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLK------WAGLFNLTARSLEEELIDARL 210
             M  + E  +DKF++ Y        F SV+++L       + GLFN   RSL E L  A  
Sbjct:   160 MHMWVEDILDKFMRIYRYQSHDYAFSSVEKLLHSLGGDDFLGLFN---RSLLETLQKAGF 216

Query:   211 SPLLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLI--NRSD 268
             S   + E++T + R+NYGQ                      V+GGN  + + L+  ++S+
Sbjct:   217 SEKFLDEIITPVMRVNYGQTMNINGFVGAVSMSCTDPGLWAVKGGNKLVCSRLLQASKSN 276

Query:   269 VALHLHEEIESISYLRE------YYELNSTKG---NSYTCQITVVATPLDEL--N---LH 314
             +       IE  +  ++       YE+    G   +S    I +VATPL++   N   L+
Sbjct:   277 LISGSVMSIEEKTRTKQTGNPTKVYEVVYQTGPEIHSDFYDIVLVATPLNQKMSNITFLN 336

Query:   315 FSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVLKQ 373
             F PPI    +  +    T ++G LN   F    + +     + T ++PDL    I ++  
Sbjct:   337 FDPPIEEFHQYYEPLVTTLIKGQLNSTVFSSRALDEFDLGTILTTDNPDLFINSIGLVSS 396

Query:   374 HDEND---------FTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPF 424
              +EN+           +K+FS  P+T   +  +F      ++ +W AYPHY  PE     
Sbjct:   397 VEENNNPQPKVERAHVWKVFSAGPLTKEQILKLFVSYDYAVKQSWLAYPHYTPPEKCPST 456

Query:   425 ILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
             IL  + LYY+N  E AAS ME SAVA  N A L   R+
Sbjct:   457 ILHDQ-LYYLNGIEFAASAMEMSAVAGYNAALLAYHRW 493

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

MGI|MGI:3606062 Pcyox1l "prenylcysteine oxidase 1 like" [Mus musculus (taxid:10090)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 132/458 (28%), Positives = 216/458 (47%)

Query:    36 LAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKL 95
             +AHFL+Q+       +I+++E+ G VGGR+AT++++ Q +E+GA+  H  + H  +F KL
Sbjct:    41 VAHFLQQHFGPR--VQIVVYEK-GTVGGRLATISVNKQNYESGAASFHSLSLHMQDFVKL 97

Query:    96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLL 155
             L L+ +       S  FG   G  FV +      T  +      L N   +   YG+S L
Sbjct:    98 LGLRQRREVVGR-SAIFG---GEHFVLE-----ETDWY------LLNLFRLWWYYGISFL 142

Query:   156 RMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSP 212
             R++ + E  ++KF++ Y+       F  V+E+L   G     N+T RS+ E L+   ++ 
Sbjct:   143 RLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGEATFVNMTQRSVAESLLQVGVTQ 202

Query:   213 LLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLINRSDVALH 272
               + ++V+ + R +YGQ                      VEGGN  + +GL+  +   + 
Sbjct:   203 RFIDDVVSAVLRASYGQSASMPAFAGAMSLAGAQGNLWSVEGGNKLVCSGLLKLAKATV- 261

Query:   273 LHEEIESISYL----REYYEL--NSTKGNSYTC-QITVVATPL--DELNLH------FSP 317
             +H  + S++      +  Y++   S KGNS     I V+ATPL  D  + +      F+P
Sbjct:   262 IHATVTSVTLHSTEGKALYQVAYESDKGNSSDFYDIVVIATPLHLDNSSNNNITFEGFTP 321

Query:   318 PISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLP-FTCI-------- 368
             PI   +   Q T  + V G LN +YFG       P   A I   D P F C         
Sbjct:   322 PIEDIQGSFQPTVVSLVHGYLNSSYFGFPDPKLFP--FANILTTDFPSFFCTLDNICPVN 379

Query:   369 ---SVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFI 425
                S  ++  +    +++ S KP+  T L  +F          W A+P Y +      F 
Sbjct:   380 ISASFRRKQPQEAAVWRVQSPKPLFRTELKTLFRSYYSVQTAEWQAHPLYGSRRTLPRFA 439

Query:   426 LDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
             L  + L+Y+NA E AAS++E +AVAA+NVA L  +R++
Sbjct:   440 LHDQ-LFYLNALEWAASSVEVTAVAAKNVALLAYNRWY 476

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016670 "oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1563290 Pcyox1l "prenylcysteine oxidase 1 like" [Rattus norvegicus (taxid:10116)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 130/457 (28%), Positives = 215/457 (47%)

Query:    36 LAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKL 95
             +AHFL+Q+       +I+++E+ G VGGR+AT++++ Q +E+GA+  H  + H  +F KL
Sbjct:    41 VAHFLQQHFGPR--VQIVVYEK-GTVGGRLATISVNKQNYESGAASFHSLSLHMQDFVKL 97

Query:    96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLL 155
             L L+ +       S  FG   G  FV +      T  +      L N   +   YG+S L
Sbjct:    98 LGLRQRREVVGR-SAIFG---GEHFVLE-----ETDWY------LLNLFRLWWYYGISFL 142

Query:   156 RMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSP 212
             R++ + E  ++KF++ Y+       F   +E+L   G     N+T RS+ E L+   ++ 
Sbjct:   143 RLQMWVEEVMEKFMRIYKYQAHGYAFSGTEELLYSLGEATFVNMTQRSVAESLLQVGVTQ 202

Query:   213 LLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLINRSDVALH 272
               + ++V+ + R +YGQ                      VEGGN  + +GL+  +   + 
Sbjct:   203 RFIDDVVSAVLRASYGQSASMPAFAGAMSLAGAQGNLWSVEGGNKLVCSGLLKLAKATV- 261

Query:   273 LHEEIESISYL----REYYELN--STKGNSYTC-QITVVATPL--DELNLH-----FSPP 318
             +H  + S++      +  Y++   + KGNS     I V+ATPL  D  + +     F+PP
Sbjct:   262 IHATVTSVTLHSTEGKALYQVGYETDKGNSSDFYDIVVIATPLHLDNSSSNITFEGFTPP 321

Query:   319 ISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLP-FTC---------- 367
             I   +   Q T  + V G LN +YFG       P   A I   D P F C          
Sbjct:   322 IDDIQGSFQPTVVSLVHGYLNSSYFGFPDPKLFP--FANILTTDFPSFFCSLDNICPVNI 379

Query:   368 -ISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFIL 426
               S  ++  +    +++ S KP+  T L  +F          W A+P Y +      F L
Sbjct:   380 SASFRRKQPQEAAVWRVQSPKPLFRTELKTLFRSYYSVQTAEWQAHPLYGSRRTLPKFAL 439

Query:   427 DGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
               + L+Y+NA E AAS++E +AVAA+NVA L  +R++
Sbjct:   440 HDQ-LFYLNALEWAASSVEVAAVAAKNVALLAYNRWY 475

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

RGD|1595324 LOC682714 "similar to chloride ion pump-associated 55 kDa protein" [Rattus norvegicus (taxid:10116)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 130/457 (28%), Positives = 215/457 (47%)

Query:    36 LAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKL 95
             +AHFL+Q+       +I+++E+ G VGGR+AT++++ Q +E+GA+  H  + H  +F KL
Sbjct:    41 VAHFLQQHFGPR--VQIVVYEK-GTVGGRLATISVNKQNYESGAASFHSLSLHMQDFVKL 97

Query:    96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLL 155
             L L+ +       S  FG   G  FV +      T  +      L N   +   YG+S L
Sbjct:    98 LGLRQRREVVGR-SAIFG---GEHFVLE-----ETDWY------LLNLFRLWWYYGISFL 142

Query:   156 RMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSP 212
             R++ + E  ++KF++ Y+       F   +E+L   G     N+T RS+ E L+   ++ 
Sbjct:   143 RLQMWVEEVMEKFMRIYKYQAHGYAFSGTEELLYSLGEATFVNMTQRSVAESLLQVGVTQ 202

Query:   213 LLMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLINRSDVALH 272
               + ++V+ + R +YGQ                      VEGGN  + +GL+  +   + 
Sbjct:   203 RFIDDVVSAVLRASYGQSASMPAFAGAMSLAGAQGNLWSVEGGNKLVCSGLLKLAKATV- 261

Query:   273 LHEEIESISYL----REYYELN--STKGNSYTC-QITVVATPL--DELNLH-----FSPP 318
             +H  + S++      +  Y++   + KGNS     I V+ATPL  D  + +     F+PP
Sbjct:   262 IHATVTSVTLHSTEGKALYQVGYETDKGNSSDFYDIVVIATPLHLDNSSSNITFEGFTPP 321

Query:   319 ISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLP-FTC---------- 367
             I   +   Q T  + V G LN +YFG       P   A I   D P F C          
Sbjct:   322 IDDIQGSFQPTVVSLVHGYLNSSYFGFPDPKLFP--FANILTTDFPSFFCSLDNICPVNI 379

Query:   368 -ISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFIL 426
               S  ++  +    +++ S KP+  T L  +F          W A+P Y +      F L
Sbjct:   380 SASFRRKQPQEAAVWRVQSPKPLFRTELKTLFRSYYSVQTAEWQAHPLYGSRRTLPKFAL 439

Query:   427 DGRHLYYVNAFENAASTMETSAVAAENVARLILSRFF 463
               + L+Y+NA E AAS++E +AVAA+NVA L  +R++
Sbjct:   440 HDQ-LFYLNALEWAASSVEVAAVAAKNVALLAYNRWY 475

GO:0001735 "prenylcysteine oxidase activity" evidence=IEA

GO:0030328 "prenylcysteine catabolic process" evidence=IEA

MGI|MGI:1914131 Pcyox1 "prenylcysteine oxidase 1" [Mus musculus (taxid:10090)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 132/455 (29%), Positives = 204/455 (44%)

Query:    37 AHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL 96
             A++LR+   K+   +I +FER  V GGR+AT+ + G  +EAG S++HP N H   F K L
Sbjct:    50 AYYLRKKFGKD--VKIDVFEREEV-GGRLATLKVQGHDYEAGGSVIHPLNLHMKRFVKEL 106

Query:    97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR 156
              L     P+S      G+++G   VF+  S      FV  ++ L      V RYG   LR
Sbjct:   107 GLS--SVPAS--GGLVGVYNGKSLVFEESSW-----FVINVIKL------VWRYGFQSLR 151

Query:   157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPL 213
             M  + E  +DKF++ Y        F SV++++   G      L  ++L E L  A  S  
Sbjct:   152 MHMWVEDLLDKFMRIYRYQSHDYAFSSVEKLMHAIGGDDYVRLLNQTLRENLKKAGFSET 211

Query:   214 LMQELVTIITRINYGQXXXXXXXXXXXXXXXXXXXXXXVEGGNWQMAAGLINRSDVALHL 273
              + E++  + ++NYGQ                      VEGGN  + +GL+  S   L  
Sbjct:   212 FLNEMIAPVMKVNYGQSTDINAFVGAVSLTAADSNLWAVEGGNKIVCSGLLQASSSNLIS 271

Query:   274 HE--EIESISYLRE------YYEL---NSTKGNSYTCQITVVATPLDEL--NL---HFSP 317
                  IE  +  ++       YE+     ++ +S    I +VA PL+    N+   +F P
Sbjct:   272 GSVMSIEEKTRTKQTGNPTKMYEVVYKTGSETHSDFYDIVLVAAPLNRKMSNITFRNFDP 331

Query:   318 PISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPDLPFTCISVL---KQ 373
             PI       Q    TF++G LN   F      +     +   +D D+    +S++   +Q
Sbjct:   332 PIEEFNDPYQQLVTTFIKGELNSTLFSSRPKDQFGLSAILVTDDSDMFINSLSIVASVRQ 391

Query:   374 HD------ENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILD 427
              +      +    +K FSR  +T   +  +F      +R  W +YPHY+ P+     IL 
Sbjct:   392 KEGPPPAVDGMHVWKTFSRDILTKEQISKLFLSYDYAVRKPWLSYPHYEPPQKCPSIILH 451

Query:   428 GRHLYYVNAFENAASTMETSAVAAENVARLILSRF 462
              R LYY+N  E AAS ME SA+A  N A L   R+
Sbjct:   452 DR-LYYLNGIEFAASCMEMSAIAGYNAALLAYHRW 485

GO:0001735 "prenylcysteine oxidase activity" evidence=ISO;IMP

GO:0005764 "lysosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006821 "chloride transport" evidence=ISO

GO:0008555 "chloride-transporting ATPase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016670 "oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor" evidence=IEA

GO:0030327 "prenylated protein catabolic process" evidence=ISO

GO:0030328 "prenylcysteine catabolic process" evidence=IMP

GO:0034361 "very-low-density lipoprotein particle" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UHG3	PCYOX_HUMAN	1, ., 8, ., 3, ., 5	0.3419	0.8336	0.8039	yes	no
Q5R748	PCYOX_PONAB	1, ., 8, ., 3, ., 5	0.3296	0.8418	0.8118	yes	no
P57681	PCYOX_ARATH	1, ., 8, ., 3, ., 6	0.6674	0.9158	0.892	yes	no
Q8C7K6	PCYXL_MOUSE	1, ., 8, ., 3, ., -	0.3177	0.8542	0.8404	yes	no
Q99ML5	PCYOX_RAT	1, ., 8, ., 3, ., 5	0.3076	0.8603	0.8313	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.3	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019298001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (502 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
pfam07156	368	pfam07156, Prenylcys_lyase, Prenylcysteine lyase	1e-126
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	3e-13
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	3e-08
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	1e-05
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	3e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	5e-05
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	6e-05
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-04
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	6e-04
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	0.002

>gnl|CDD|115787 pfam07156, Prenylcys_lyase, Prenylcysteine lyase

 Score =  372 bits (956), Expect = e-126
 Identities = 147/375 (39%), Positives = 195/375 (52%), Gaps = 27/375 (7%)

Query: 133 FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG 192
           F +    + N + +V RYGLS LRM  + E  +DKF++ Y   E    F +V+E+L   G
Sbjct: 1   FEETDWFIINVLKLVWRYGLSSLRMHMWVEDVLDKFMRIYRYQEHGYAFSNVEELLHAIG 60

Query: 193 ---LFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGL 249
                NLT  +L E L +A  S   + E+V  + R NYGQS  I+  AGAVSLAG+ GGL
Sbjct: 61  GDDFVNLTKMTLTEYLNEAGFSQQFLNEMVAAVLRANYGQSTDINAFAGAVSLAGADGGL 120

Query: 250 WAVEGGNWQMAAGLINRSDVALHLHEEIESI-SYLREYYEL-----NSTKGNSYTC-QIT 302
           W+VEGGN Q+ +GL+  S   L +H ++ SI  YL    +L        KGNS     I 
Sbjct: 121 WSVEGGNKQVCSGLLQASKSNL-IHGKVMSITKYLGNGKKLYEVVYKIGKGNSSDFYDIV 179

Query: 303 VVATPLDELN-----LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVA 356
           VVATPLD         +F PPI     K QHT  TFV+G LN +YFG       P   + 
Sbjct: 180 VVATPLDRSMSNITFNNFDPPIEEFYVKYQHTVTTFVKGELNSSYFGSRPEDDFPLATIL 239

Query: 357 TIEDPDLPFTCISVLKQHDEN----DFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAY 412
           T +DPDL    IS+L             +K+FSR P+T + LD +F      ++  W AY
Sbjct: 240 TTDDPDLFINSISILASVRRKCFQGWNVWKVFSRSPLTKSQLDKLFLSYDYVVKKPWLAY 299

Query: 413 PHYKAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENVARLILSRFFSKPSVTSLN 472
           PHY  PE    FIL    LYY+NA E AAS ME SA+AA+N+A L   R+         +
Sbjct: 300 PHYSPPEKCPSFILH-DRLYYLNAIEGAASCMEMSAIAAKNIALLAYHRWN-----GKED 353

Query: 473 LKTSSDAREELHLDL 487
           +    D   +L  +L
Sbjct: 354 MIDQDDLMHKLKTEL 368

This family contains prenylcysteine lyases (EC:1.8.3.5) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps. Length = 368

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 64.0 bits (157), Expect = 3e-13
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 26 IIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK 85
          I+G+G+ G   A+ L +         +L+ E+   +GG   +    G   + GA I H  
Sbjct: 1  IVGAGLSGLVAAYLLAKR-----GKDVLVLEKRDRIGGNAYSERDPGYRHDYGAHIFHTS 55

Query: 86 NYHTVNF 92
            +    
Sbjct: 56 YPNVREL 62

Length = 66

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 60/311 (19%), Positives = 94/311 (30%), Gaps = 47/311 (15%)

Query: 51  RILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD--PPSSED 108
            + + E    VGGR+ TV   G   E GA   H    + +N    L L+      P   D
Sbjct: 16  DVTVLEARDRVGGRIRTVRFDGFLIELGAQWFHGAYPNLLNLLLELGLELGLLLFPFPGD 75

Query: 109 STAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLR-----MESFTE 162
                 + G                 ++ ++ L  S+   +R  L LL           E
Sbjct: 76  PFVRLKYRGGPYPDLPGDLPPPLFLLLRSLLELELSLEEPIRRALLLLVALLLLAPELLE 135

Query: 163 SAVDKFLKYYESFETRPVF-ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTI 221
             +  F     +     +F      +L  A  F     S    L+  RL  L    +V  
Sbjct: 136 LDLLSFSDLLSAAGFLELFLLLFRSLLAGALGFLPLELSARLALLSLRLFDLEDGGVV-- 193

Query: 222 ITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESIS 281
                                   GGG     GG  Q+ A  +      + L+  + SI+
Sbjct: 194 ----------------------FPGGGFTLPLGGLPQLIAAALGLLGGRVRLNTRVRSIT 231

Query: 282 YLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPISIPERKLQHTHATFVRGALNP 340
              +   + +  G +      +V  PL  L  + F PP  +P  K +             
Sbjct: 232 KSGDGVTVTTVDGRTIEADAVIVTVPLGVLKRILFLPP--LPAAKQE-----------AI 278

Query: 341 AYFGLDGVSKI 351
              G   VSK+
Sbjct: 279 RNLGFGSVSKV 289

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 9/66 (13%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQ--YSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
          P++ I+G+GI G + A+ LR+           + +FE+   VGGR+AT  + G  F+ GA
Sbjct: 2  PSIAIVGAGIAGLAAAYALREAGRE-------VTVFEKGRGVGGRLATRRLDGGRFDHGA 54

Query: 80 SILHPK 85
              P+
Sbjct: 55 QYFKPR 60

Length = 331

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 62/305 (20%), Positives = 95/305 (31%), Gaps = 55/305 (18%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           + IIG GI G S A+ L++         + +FE +  VGG + TV I G  FE G     
Sbjct: 3   IAIIGGGIAGLSAAYRLQK---AGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFL 59

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVF---KTISVSSTVPFVQKIVSL 140
            +    ++  K L L        ED   +      K+++   K   + +  P +  I  L
Sbjct: 60  ARKEEILDLIKELGL--------EDKLLWNS-TARKYIYYDGKLHPIPT--PTILGIPLL 108

Query: 141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
             S    L   L         E   D                SV E ++         R 
Sbjct: 109 LLSSEAGLARALQEFIRPKSWEPKQD---------------ISVGEFIR---------RR 144

Query: 201 LEEELIDARLSPLL-------MQELVTIITRIN--YGQSLSISGLAGAVSLAGSGGGLWA 251
             EE+++  + PLL         +L            +    S L GA         L  
Sbjct: 145 FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKK 204

Query: 252 V-----EGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVAT 306
                  GG   +   L  + +  +    E+  I        +    G   T    +   
Sbjct: 205 EKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTA 264

Query: 307 PLDEL 311
           PL EL
Sbjct: 265 PLPEL 269

Length = 444

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 45.2 bits (108), Expect = 5e-05
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
            V IIG GI G S A+ L +   K     I + E +  +GG++ TV   G   E G 
Sbjct: 1  KKVAIIGGGITGLSAAYRLHK---KGPDADITLLEASDRLGGKIQTVRKDGFPIELGP 55

Length = 451

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 58/355 (16%), Positives = 98/355 (27%), Gaps = 72/355 (20%)

Query: 20  QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
               V +IG+G+ G + A  L   +      ++ + E+N  VGGR  T  + G  F+ G 
Sbjct: 2   PMYDVVVIGAGLNGLAAAALL---ARAGL--KVTVLEKNDRVGGRARTFELDGFRFDTGP 56

Query: 80  S-ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV 138
           S  L P           L+    D    + +    + DG      T  + +T        
Sbjct: 57  SWYLMPDPGPLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYT-DLEAT-------- 107

Query: 139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF-------------ETRPVFESVD 185
                             +ES      +   +Y                   R     V 
Sbjct: 108 ---------------AELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVP 152

Query: 186 EML-KWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SISGLAGAVSL 242
           +   +   L   +  S  +       S LL   L        YG +   +   L   +S 
Sbjct: 153 DTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYS---AVYGGAPPSTPPALYLLLSH 209

Query: 243 AGSGGGLWAVEGGNWQMAAGL---INRSDVALHLHEEIESIS-YLREYYELNSTKGNSYT 298
            G  GG++   GG   +   L          +    E+  I     +   + ++ G +  
Sbjct: 210 LGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIE 269

Query: 299 CQITVV-ATPLDELNLH------------------FSPPISIPERKLQHTHATFV 334
               V  A P     L                    S  + +    L   H T +
Sbjct: 270 ADAVVSNADPALLARLLGEARRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTI 324

Length = 487

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASIL 82
            +IG+G GG +LA  L   ++      +   E+    GGR   +   G  F+ G +++
Sbjct: 1  AVVIGAGFGGLALAIRL---AAAGIPVTV--VEQRDKPGGRAGVLEDDGFRFDTGPTVI 54

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 17/146 (11%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V IIG GI G   A++L +         + + E +  VGG++ TV   G   E G     
Sbjct: 5   VVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFL 63

Query: 84  PKNYHTVNFTKLLNLKP--KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLA 141
            +     +  K L L+       +           G ++V    +    +P   KI    
Sbjct: 64  ERKKSAPDLVKDLGLEHVLVSDAT-----------GQRYVLV--NRGKLMPVPTKIAPFV 110

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDK 167
            + L  L   L    M+    ++  K
Sbjct: 111 KTGLFSLGGKLRAG-MDFIRPASPGK 135

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
          V ++G+G+ G + A+ L           +L+ E    VGG + +V+  G  +E G 
Sbjct: 15 VAVVGAGVSGLAAAYALA----SKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGP 66

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	100.0
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	100.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.96
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.96
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.96
PLN02268	435	probable polyamine oxidase	99.95
PLN02529	738	lysine-specific histone demethylase 1	99.95
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.95
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.95
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.95
PLN02576	496	protoporphyrinogen oxidase	99.95
PRK07233	434	hypothetical protein; Provisional	99.94
PLN03000	881	amine oxidase	99.94
PLN02676	487	polyamine oxidase	99.94
PLN02568	539	polyamine oxidase	99.94
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.93
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.93
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.93
PLN02612	567	phytoene desaturase	99.92
PLN02976	1713	amine oxidase	99.92
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.91
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.91
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.9
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.9
PLN02487	569	zeta-carotene desaturase	99.9
PRK07208	479	hypothetical protein; Provisional	99.89
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.88
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.85
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.83
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.82
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.8
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.77
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.63
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.62
COG3349	485	Uncharacterized conserved protein [Function unknow	99.57
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.52
COG2081	408	Predicted flavoproteins [General function predicti	99.49
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.48
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.4
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.36
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.35
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.35
COG0579	429	Predicted dehydrogenase [General function predicti	99.32
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.32
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.31
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.29
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.27
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.22
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.21
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.21
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	99.21
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.2
PRK06847	375	hypothetical protein; Provisional	99.17
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.17
PRK07588	391	hypothetical protein; Provisional	99.17
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.15
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.15
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.14
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.13
PRK07236	386	hypothetical protein; Provisional	99.13
PRK08163	396	salicylate hydroxylase; Provisional	99.13
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.12
PRK08013	400	oxidoreductase; Provisional	99.11
PRK05257	494	malate:quinone oxidoreductase; Validated	99.1
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.1
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.1
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.09
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.09
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.09
PRK09126	392	hypothetical protein; Provisional	99.09
PRK06753	373	hypothetical protein; Provisional	99.09
PRK05868	372	hypothetical protein; Validated	99.08
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.07
PRK10157	428	putative oxidoreductase FixC; Provisional	99.07
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.07
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.06
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.06
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.04
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.04
PRK06184	502	hypothetical protein; Provisional	99.04
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.04
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.02
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.02
PRK06475	400	salicylate hydroxylase; Provisional	99.02
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.01
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.01
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.01
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.0
PLN02463	447	lycopene beta cyclase	99.0
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.0
PRK08274	466	tricarballylate dehydrogenase; Validated	98.99
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.99
PRK06834	488	hypothetical protein; Provisional	98.99
PRK07190	487	hypothetical protein; Provisional	98.98
PRK07045	388	putative monooxygenase; Reviewed	98.98
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.97
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.96
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	98.96
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.95
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.95
PRK08244	493	hypothetical protein; Provisional	98.94
PRK10015	429	oxidoreductase; Provisional	98.94
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.94
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.94
PRK07538	413	hypothetical protein; Provisional	98.93
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.93
PRK07121	492	hypothetical protein; Validated	98.93
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.92
PLN02661	357	Putative thiazole synthesis	98.91
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.88
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.86
PRK06185	407	hypothetical protein; Provisional	98.85
PRK06996	398	hypothetical protein; Provisional	98.82
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.82
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.82
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.82
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.81
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.81
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.8
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.79
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.78
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.77
PRK06175	433	L-aspartate oxidase; Provisional	98.77
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.76
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.76
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.75
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.75
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.74
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.73
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.72
PLN02697	529	lycopene epsilon cyclase	98.72
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.71
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.71
PRK11445	351	putative oxidoreductase; Provisional	98.69
KOG2853	509	consensus Possible oxidoreductase [General functio	98.69
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.69
PLN02985	514	squalene monooxygenase	98.69
PRK06126	545	hypothetical protein; Provisional	98.69
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.68
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.67
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.67
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.65
PRK09897	534	hypothetical protein; Provisional	98.65
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.65
PRK07804	541	L-aspartate oxidase; Provisional	98.65
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.64
PRK12839	572	hypothetical protein; Provisional	98.63
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.62
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.61
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.61
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.61
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.6
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.6
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.59
PRK08275	554	putative oxidoreductase; Provisional	98.59
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.58
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.57
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.57
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.56
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.56
PRK08294	634	phenol 2-monooxygenase; Provisional	98.55
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.54
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.54
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.54
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.54
PRK08401	466	L-aspartate oxidase; Provisional	98.54
PRK07395	553	L-aspartate oxidase; Provisional	98.53
PTZ00367	567	squalene epoxidase; Provisional	98.53
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	98.49
COG3573	552	Predicted oxidoreductase [General function predict	98.49
PRK08071	510	L-aspartate oxidase; Provisional	98.48
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.48
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.47
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.47
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.46
PLN02815	594	L-aspartate oxidase	98.43
PRK07512	513	L-aspartate oxidase; Provisional	98.43
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.42
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.41
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.39
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.37
PRK09077	536	L-aspartate oxidase; Provisional	98.36
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.35
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.34
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.34
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.32
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.31
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.31
PLN02852	491	ferredoxin-NADP+ reductase	98.3
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.3
PRK12831	464	putative oxidoreductase; Provisional	98.3
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.27
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.27
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.24
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.23
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.23
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.23
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.22
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.22
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.21
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.2
PRK14727	479	putative mercuric reductase; Provisional	98.19
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.19
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.19
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.17
PRK06116	450	glutathione reductase; Validated	98.16
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.15
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.15
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.14
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.14
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.14
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.12
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.12
PRK06370	463	mercuric reductase; Validated	98.12
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.11
PTZ00188	506	adrenodoxin reductase; Provisional	98.11
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.11
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	98.1
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.09
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.08
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.07
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.06
TIGR02053	463	MerA mercuric reductase. This model represents the	98.06
PRK10262	321	thioredoxin reductase; Provisional	98.06
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.05
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.04
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.04
PRK14694	468	putative mercuric reductase; Provisional	98.04
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.04
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.04
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.04
PTZ00058	561	glutathione reductase; Provisional	98.03
PRK13748	561	putative mercuric reductase; Provisional	98.03
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	98.03
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.01
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.98
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.98
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.97
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.97
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.97
PLN02507	499	glutathione reductase	97.97
PTZ00052	499	thioredoxin reductase; Provisional	97.95
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.92
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.9
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.88
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.88
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.86
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.86
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.85
PLN02546	558	glutathione reductase	97.84
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.83
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.82
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.82
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.8
PRK14989	847	nitrite reductase subunit NirD; Provisional	97.8
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.78
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.78
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.75
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.73
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.72
PRK13984	604	putative oxidoreductase; Provisional	97.71
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	97.7
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.67
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.67
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.66
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.64
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.61
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.61
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.6
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	97.6
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.59
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.52
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.49
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.46
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.45
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.44
PRK02106	560	choline dehydrogenase; Validated	97.42
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.41
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.39
KOG2852	380	consensus Possible oxidoreductase [General functio	97.34
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.34
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.33
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.31
PRK07846	451	mycothione reductase; Reviewed	97.31
PLN02507	499	glutathione reductase	97.3
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.28
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.27
PRK06370	463	mercuric reductase; Validated	97.27
PRK06116	450	glutathione reductase; Validated	97.26
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.25
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.22
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.22
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.2
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.12
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.04
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	96.95
COG4716	587	Myosin-crossreactive antigen [Function unknown]	96.94
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.89
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	96.87
PLN02785	587	Protein HOTHEAD	96.86
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	96.83
PRK14727	479	putative mercuric reductase; Provisional	96.83
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.79
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.74
PRK14694	468	putative mercuric reductase; Provisional	96.72
PRK13748	561	putative mercuric reductase; Provisional	96.66
PTZ00052	499	thioredoxin reductase; Provisional	96.65
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.64
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	96.53
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.49
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.48
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	96.45
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.36
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	96.26
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	95.94
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	95.9
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.89
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	95.89
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.88
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.69
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.61
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.51
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.47
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.35
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.28
KOG2755	334	consensus Oxidoreductase [General function predict	95.14
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.07
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.03
TIGR02053	463	MerA mercuric reductase. This model represents the	95.0
PRK07846	451	mycothione reductase; Reviewed	94.99
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.97
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	94.91
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	94.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.83
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.7
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.68
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.66
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	94.65
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	94.65
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.61
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.54
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.49
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.47
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.45
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	94.39
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.31
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.26
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.19
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.18
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.16
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.09
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.07
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.04
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.01
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	94.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	93.98
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.89
PTZ00153	659	lipoamide dehydrogenase; Provisional	93.87
PTZ00058	561	glutathione reductase; Provisional	93.82
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.81
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.79
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	93.79
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	93.69
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.62
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.58
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	93.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.55
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.52
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.43
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	93.35
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.34
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.32
PRK10262	321	thioredoxin reductase; Provisional	93.31
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.25
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	93.23
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.22
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.17
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.17
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	93.14
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	93.14
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.1
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.07
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.04
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	93.01
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.99
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.99
PRK04148	134	hypothetical protein; Provisional	92.95
PLN02546	558	glutathione reductase	92.95
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	92.79
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	92.72
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	92.67
PRK12831	464	putative oxidoreductase; Provisional	92.66
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.54
PRK12770	352	putative glutamate synthase subunit beta; Provisio	92.46
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	92.4
PRK07417	279	arogenate dehydrogenase; Reviewed	92.35
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	92.31
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.27
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.19
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.18
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.16
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.9
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	91.85
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.84
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	91.83
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	91.78
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.64
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	91.57
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.56
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.34
PRK08306	296	dipicolinate synthase subunit A; Reviewed	91.32
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	91.26
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.22
PRK06223	307	malate dehydrogenase; Reviewed	91.15
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.05
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.99
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.93
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	90.85
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	90.77
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.62
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	90.58
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	90.52
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.5
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.46
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	90.46
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	90.43
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.36
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.35
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.23
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.03
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	90.03
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	89.97
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	89.93
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	89.68
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	89.56
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.55
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.47
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	89.4
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	89.38
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	89.35
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	89.33
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.25
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.22
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	89.21
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	89.16
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	89.16
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	89.15
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	89.15
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	89.08
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	89.06
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.05
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.01
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.99
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.9
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	88.8
PRK15116	268	sulfur acceptor protein CsdL; Provisional	88.79
PTZ00117	319	malate dehydrogenase; Provisional	88.69
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	88.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	88.21
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	88.09
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	88.09
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	87.92
PRK09496	453	trkA potassium transporter peripheral membrane com	87.84
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	87.82
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	87.82
PRK12548	289	shikimate 5-dehydrogenase; Provisional	87.77
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	87.77
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	87.76
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	87.61
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	87.59
PLN02256	304	arogenate dehydrogenase	87.51
PRK12779	944	putative bifunctional glutamate synthase subunit b	87.44
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	87.42
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	87.35
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	87.34
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	87.31
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	87.16
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.04
PRK08017	256	oxidoreductase; Provisional	86.94
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.91
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.9
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	86.75
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	86.7
PRK00536	262	speE spermidine synthase; Provisional	86.68
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	86.67
PLN02494	477	adenosylhomocysteinase	86.51
PRK05562	223	precorrin-2 dehydrogenase; Provisional	86.48
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	86.44

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=100.00  E-value=6.8e-48  Score=374.35  Aligned_cols=328  Identities=47%  Similarity=0.772  Sum_probs=288.0

Q ss_pred             HHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcC---ChhhhcccHHHHHHHcCCCHHHH
Q 043512          139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG---LFNLTARSLEEELIDARLSPLLM  215 (487)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~  215 (487)
                      .+++.++++||||.++.+.+.+++..+++|.++|..+....+|.++.+++...+   +..+...++.++|++.++++.|+
T Consensus         7 ~~~~~~kllWRYG~sp~r~~~~v~~~l~kFl~iY~~q~~~~~F~sv~~l~~~lg~~~~~~~t~~t~~e~L~~~gi~~~fi   86 (368)
T PF07156_consen    7 SWWNILKLLWRYGLSPIRMQNLVKSTLDKFLKIYELQEPGFPFSSVEELLSALGGDDFLNLTKVTGEEYLKENGISERFI   86 (368)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcccCCCCcCCHHHHHHHhCChHHHHHHHHHHHHHHHHCCCCHHHH
Confidence            678999999999999999999999999999999997767788999999999988   77789999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCcchHHHHHhhhcCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEE-EEeCCE---EEEEE
Q 043512          216 QELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESI-SYLREY---YELNS  291 (487)
Q Consensus       216 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I-~~~~~~---v~V~~  291 (487)
                      ++++.+.+++||||+.+++++.++++++....|.|.++||+.+|+++|++..|+++ ++++|++| ...+++   +.|..
T Consensus        87 ~Elv~a~tRvNYgQ~~~i~a~~G~vSla~a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~  165 (368)
T PF07156_consen   87 NELVQAATRVNYGQNVNIHAFAGLVSLAGATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSDGYSLYEVTY  165 (368)
T ss_pred             HHHHHhheEeecccccchhhhhhheeeeeccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCCCceeEEEEE
Confidence            99999999999999988999999999998778899999999999999999999999 99999999 333332   35544


Q ss_pred             cc--C-ceEecCEEEEccCCCCCC--e---eecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCC-ceeEeccCCC
Q 043512          292 TK--G-NSYTCQITVVATPLDELN--L---HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIP-ELVATIEDPD  362 (487)
Q Consensus       292 ~~--G-~~~~ad~VV~a~~~~~~~--~---~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~-~~i~~~~~~~  362 (487)
                      .+  + ..-.+|.||+|+|++...  +   .+.|+.+.+.+++++.+.+++.+.+++.|||++....+| ..|+|++.++
T Consensus       166 ~~~~~~~~~~yD~VVIAtPl~~~~snI~~~~~~~~i~~~~~~Y~~l~vTlv~~~lnp~yFgl~~~~~~P~~~IlTt~~~~  245 (368)
T PF07156_consen  166 KSSSGTESDEYDIVVIATPLQQSFSNITFINFDPPIDIPPRPYVHLHVTLVAGRLNPSYFGLPPPSKVPLETILTTENPD  245 (368)
T ss_pred             ecCCCCccccCCEEEECCCcccccCCccccCCCCCCccCCCCcEEEEEEEEeccCCHhhcCCCCcccCCcceEEEeCCCC
Confidence            33  2 234579999999998654  4   355555556678999999999999999999999888899 6888887777


Q ss_pred             CCeeEeeec----cccCCCCcEEEeccCCCCCHHHHhhhcccCCceEEEeccCCCCCCCCCCCCCceeeCCceeeecchh
Q 043512          363 LPFTCISVL----KQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGRHLYYVNAFE  438 (487)
Q Consensus       363 ~~~~~i~~~----~~~~~~~~~~~~~s~~~l~~~~l~~~f~~~~~~~~~~w~~yp~~~~~~~~~p~~l~g~~~~~~~~~~  438 (487)
                      ++++++...    .....++++||+||++++++++|+++|....++.+++|.+||.+.||..++||+|+ +|+||+|++|
T Consensus       246 ~~~~s~~~~~~~~~~~~~~~~vyKIFS~~~Lt~~~L~~lF~~~~~~~~~~W~AYP~~~p~~~~~~~~L~-~glyY~n~iE  324 (368)
T PF07156_consen  246 LPFNSISIVKSVNRKTPKGEYVYKIFSPEPLTDEFLSQLFSSYSEVKRKEWLAYPHYSPPEKFPPFKLH-DGLYYTNAIE  324 (368)
T ss_pred             CCCcccccccccCCCCCCCccEEEecCCCcCCHHHHHHHhhccCceeeeeEeCCCCCCCCCCCCCeEee-CCeeEchhHH
Confidence            877766544    23456899999999999999999999998888899999999999999999999996 4999999999


Q ss_pred             hhHHHHhHHHHHHHHHHHHHHhhhhcCCCC
Q 043512          439 NAASTMETSAVAAENVARLILSRFFSKPSV  468 (487)
Q Consensus       439 ~~~s~~~~~~~~g~~~a~~i~~~l~~~~~~  468 (487)
                      +++|+||+++|+|||+|.++.++|....-.
T Consensus       325 ~~aStME~sai~akNvA~L~~~~~~~~~~~  354 (368)
T PF07156_consen  325 SAASTMETSAIAAKNVALLIYDRWNGDTDK  354 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999876433

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>TIGR02734 crtI_fam phytoene desaturase

Probab=100.00  E-value=3.3e-31  Score=275.20  Aligned_cols=382  Identities=19%  Similarity=0.225  Sum_probs=240.2

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCCC-
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD-  102 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~~-  102 (487)
                      |||||||++||+||.+|++     +|++|+|+||++++|||++|+..+|+.||.|++++..+. .+.++++.+|++... 
T Consensus         1 vvVIGaG~~GL~aA~~La~-----~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~-~~~~l~~~lg~~l~~~   74 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA-----AGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMPE-ALEELFALAGRDLADY   74 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh-----CCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEcccc-HHHHHHHHcCCChhhe
Confidence            6999999999999999999     999999999999999999999999999999999988653 355788888854321 


Q ss_pred             -C-CCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512          103 -P-PSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV  180 (487)
Q Consensus       103 -~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                       . ...+..+.+.+.+|+.+.+..+.    ..+.+++..+.+         .+...+.++++.....+......+.. .+
T Consensus        75 l~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~l~~~~p---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  140 (502)
T TIGR02734        75 VELVPLDPFYRLCWEDGSQLDVDNDQ----EELEAQIARFNP---------GDVAGYRRFLDYAERVYREGYRKLGY-VP  140 (502)
T ss_pred             EEEEECCCceEEECCCCCEEEecCCH----HHHHHHHHHhCc---------ccHHHHHHHHHHHHHHHHHHHHHHhh-CC
Confidence             1 11112334445556666653211    112222222222         13345566666555555432222111 12


Q ss_pred             CCCHHHHHHH---cCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhcCCCCceEeecch
Q 043512          181 FESVDEMLKW---AGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAGSGGGLWAVEGGN  256 (487)
Q Consensus       181 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~g~~~~~gG~  256 (487)
                      +.+..+++..   .........++.+++++...++.+. .++.. ....++.+. +.++++.++.+.....|.|++.||+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~-~~~~~g~~p~~~~~~~~l~~~~~~~~g~~~~~gG~  218 (502)
T TIGR02734       141 FLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLR-QAFSF-HALFLGGNPFRTPSIYALISALEREWGVWFPRGGT  218 (502)
T ss_pred             CCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHH-HHhcc-cceeeccCcccchHHHHHHHHHHhhceEEEcCCCH
Confidence            3444444321   1112234577888887655444432 22221 112345444 5777777777666667899999999


Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCCCeeecCCC--C----CCCcCe
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDELNLHFSPPI--S----IPERKL  326 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~--~----~~~~~~  326 (487)
                      +.++++|.+   +.|++|+++++|++|..++++ ++|++.+|+++.||.||+|+++..+...+.++.  +    ....+.
T Consensus       219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~  298 (502)
T TIGR02734       219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRK  298 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccccccccccccC
Confidence            999999976   459999999999999988776 588898998899999999999876543333321  1    122344


Q ss_pred             EEEEEEEeeCCcCcccccCCCCC-CCCceeEeccCCCCCeeEeeeccccCCCCcEEEeccCCCCCHHHHhhhcccCCceE
Q 043512          327 QHTHATFVRGALNPAYFGLDGVS-KIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETI  405 (487)
Q Consensus       327 ~~~~~~~~~~~l~~~y~g~~~~~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~l~~~~l~~~f~~~~~~~  405 (487)
                      +.+.+.++      .|++++... .         .+...+|++.+..++                ++.+.+++....  .
T Consensus       299 ~~s~s~~~------~~lgl~~~~~~---------~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~--~  345 (502)
T TIGR02734       299 RPSPSLFV------LYFGLLGVDGH---------WPQLAHHTLCFGPRY----------------KELFDEIFRKGR--L  345 (502)
T ss_pred             CcCCeeeE------EEEeeccccCc---------CCCcCceeEecCcCH----------------HHHHHHHhcCCC--C
Confidence            55677787      899998421 1         234557777665443                455666665332  2


Q ss_pred             EEeccCCCCCCCCC----CCCCceeeCCceeeecchh-hh-HHHHhHHHHHHHHHHHHHHhhhhcCC
Q 043512          406 RINWGAYPHYKAPE----VFAPFILDGRHLYYVNAFE-NA-ASTMETSAVAAENVARLILSRFFSKP  466 (487)
Q Consensus       406 ~~~w~~yp~~~~~~----~~~p~~l~g~~~~~~~~~~-~~-~s~~~~~~~~g~~~a~~i~~~l~~~~  466 (487)
                      +.++..|.  +.|+    +.+|   +|+.++++.... .. ...-+|.. ..+++++.|++++++..
T Consensus       346 ~~~p~~~v--~~~s~~dp~~aP---~G~~~~~~~~~~~~~~~~~~~~~~-~k~~~~~~il~~l~~~~  406 (502)
T TIGR02734       346 AEDPSLYL--HRPTVTDPSLAP---PGCENLYVLAPVPHLGTADVDWSV-EGPRYRDRILAYLEERA  406 (502)
T ss_pred             CCCCcEEE--EcCCCCCCCCCC---CCCccEEEEEeCCCCCCCCCCcHH-HHHHHHHHHHHHHHHhc
Confidence            33444443  2232    4677   676665542211 11 11224654 46779999999998873

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.96  E-value=4.9e-28  Score=248.30  Aligned_cols=320  Identities=16%  Similarity=0.192  Sum_probs=207.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcC-C
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLN-L   98 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg-l   98 (487)
                      +.+||||||||++||+||.+|++     +|++|+||||++++|||++++..+|++||+|++++..+...  .++++++ +
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~-----~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~~~~~~--~~~~~l~~l   74 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR-----AGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYLMPDPG--PLFRELGNL   74 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh-----CCCEEEEEEecCCCCcceEEEeccceEeccCcceeecCchH--HHHHHhccC
Confidence            46899999999999999999999     99999999999999999999999999999999999888765  5677777 5


Q ss_pred             CCCCCC--CCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhc
Q 043512           99 KPKDPP--SSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        99 ~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      ......  ..+..+++.+.+|..+....+.              ......+.++.+ +...+.+++....+.+......+
T Consensus        75 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~--------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  140 (487)
T COG1233          75 DADGLDLLPPDPAYRVFLPDGDAIDVYTDL--------------EATAELLESLEPGDGEALARYLRLLARLYELLAALL  140 (487)
T ss_pred             cccceeeeccCCceeeecCCCCEEEecCCH--------------HHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhc
Confidence            443221  1123344444456666654321              111122233332 55566666665555555555533


Q ss_pred             cCCCCC------CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcC-CCC-CcchHHHHHhhhcCCC
Q 043512          176 ETRPVF------ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYG-QSL-SISGLAGAVSLAGSGG  247 (487)
Q Consensus       176 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~  247 (487)
                      ......      .....++   .+......+..+++... +.....+.++...  ..++ .+. ..++++.++.......
T Consensus       141 ~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~--~~~~~~~p~~~~a~~~~~~~~~~~~  214 (487)
T COG1233         141 LAPPRSELLLVPDTPERLL---RLLGFSLTSALDFFRGR-FGSELLRALLAYS--AVYGGAPPSTPPALYLLLSHLGLSG  214 (487)
T ss_pred             CCCchhhhhhccccHHHHH---HHHHHhhhhHHHHHHHH-hcCHHHHHHHHHH--HHhcCCCCCchhHHHHHHHHhcccC
Confidence            221111      1111111   12233445566666655 4433333322222  2232 333 4457788888888889


Q ss_pred             CceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCCCeeecCCCC--C
Q 043512          248 GLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDELNLHFSPPIS--I  321 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~~--~  321 (487)
                      |.++++||+++|+++|++   +.|++|+++++|++|..++++ +++++.+|+.+++|.||+++.+ .....+.+...  .
T Consensus       215 G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~-~~~~~l~~~~~~~~  293 (487)
T COG1233         215 GVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP-ALLARLLGEARRPR  293 (487)
T ss_pred             CeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch-hhhhhhhhhhhhhc
Confidence            999999999999999976   469999999999999998875 6888888878999999999999 32222322221  1


Q ss_pred             CCcCeEEEEEEEeeCCcCcccccCCCCCCCCceeEeccCCCCCeeEeeeccccCCCCcEEEeccCCCCCHHHHhhhccc
Q 043512          322 PERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSV  400 (487)
Q Consensus       322 ~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~l~~~~l~~~f~~  400 (487)
                      ....+...++++.      .|+|++...           +...+|++.+..+.                .+++.+.|..
T Consensus       294 ~~~~~~~~~~al~------~~~g~~~~~-----------~~~~~~~~~~~~~~----------------~~~~~~~~~~  339 (487)
T COG1233         294 YRGSYLKSLSALS------LYLGLKGDL-----------LPLAHHTTILLGDT----------------REQIEEAFDD  339 (487)
T ss_pred             cccchhhhhHHHH------hccCCCCCC-----------cchhhcceEecCCc----------------HHHHHHHhhh
Confidence            2233344455665      688887641           23445555555553                6777888765

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.96  E-value=2.8e-27  Score=243.45  Aligned_cols=399  Identities=16%  Similarity=0.208  Sum_probs=226.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCC-CCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSK-NWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~-~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      ++|+|||||++||+||++|++...+ ..|++|+|||+++++|||++|.+.+|+.+|.|+++++..+..+.++++++|+..
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~   81 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE   81 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence            5799999999999999999982100 014899999999999999999999999999999999888887889999999876


Q ss_pred             CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512          101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV  180 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                      ........ ..+.+.+|....+.   .+....++.....+.       +...  ..       ...++..+...+..   
T Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~p---~~~~~~~p~~~~~~~-------~~~~--~~-------~~~~~~~~~~~~~~---  138 (463)
T PRK12416         82 EMVYNETG-ISYIYSDNTLHPIP---SDTIFGIPMSVESLF-------SSTL--VS-------TKGKIVALKDFITK---  138 (463)
T ss_pred             ceecCCCC-ceEEEECCeEEECC---CCCeecCCCChHHhh-------cCCc--CC-------HHHHHHhhhhhccC---
Confidence            54322211 12333444322221   111111111100000       0000  00       00011111110000   


Q ss_pred             CCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH---HHHHhhh-------------
Q 043512          181 FESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL---AGAVSLA-------------  243 (487)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~---~~~~~~~-------------  243 (487)
                                 ......+.++.+|+.+. +.+.+.+.++.++....|+.+. +++.-   ..+..+.             
T Consensus       139 -----------~~~~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~  206 (463)
T PRK12416        139 -----------NKEFTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEEN  206 (463)
T ss_pred             -----------CCCCCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHh
Confidence                       00012467889998864 4577777788888887787665 45432   1111110             


Q ss_pred             ------cCCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC-eee
Q 043512          244 ------GSGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN-LHF  315 (487)
Q Consensus       244 ------~~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~-~~l  315 (487)
                            ......++++||+++++++|++.++ ++|+++++|++|+.+++++.|++.+|+++.||+||+|+|+.... +.+
T Consensus       207 ~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~~~~~ll~  286 (463)
T PRK12416        207 KKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHDIAETLLQ  286 (463)
T ss_pred             hhccCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHHHHHhhcC
Confidence                  0011255899999999999999874 58999999999999988899988888889999999999987643 333


Q ss_pred             cCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCC-CCCc-e--eEeccCCCCCeeEeeeccc-----cCCCCcEEEec--
Q 043512          316 SPPISIPERKLQHTHATFVRGALNPAYFGLDGVS-KIPE-L--VATIEDPDLPFTCISVLKQ-----HDENDFTYKIF--  384 (487)
Q Consensus       316 ~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~-~~~~-~--i~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~--  384 (487)
                      .|+++.....+.+. +...      .|++++... .+|. .  .+..+........+.+...     ..+...+...|  
T Consensus       287 ~~~l~~~~~~~~~~-~~~~------v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~  359 (463)
T PRK12416        287 SNELNEQFHTFKNS-SLIS------IYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGKQKLLVRMFYK  359 (463)
T ss_pred             CcchhHHHhcCCCC-ceEE------EEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCCCeEEEEEEeC
Confidence            34332222222211 1122      344554321 1221 1  1111111111122222111     01111222221  


Q ss_pred             ------------cCCCC---CHHHHhhhcccCC---ceEEEecc-CCCCCCCCC-----CCCCce-eeCCceeeecchhh
Q 043512          385 ------------SRKPM---TDTLLDDIFSVRK---ETIRINWG-AYPHYKAPE-----VFAPFI-LDGRHLYYVNAFEN  439 (487)
Q Consensus       385 ------------s~~~l---~~~~l~~~f~~~~---~~~~~~w~-~yp~~~~~~-----~~~p~~-l~g~~~~~~~~~~~  439 (487)
                                  +++++   ..++|.++|+...   ....++|. ++|.+....     .+.+.. -..++++++ |...
T Consensus       360 ~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~a-G~~~  438 (463)
T PRK12416        360 STNPVYETIKNYSEEELVRVALYDIEKSLGIKGEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLA-GASY  438 (463)
T ss_pred             CCCCCchhhhcCCHHHHHHHHHHHHHHHhCCCCCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEe-cccc
Confidence                        12222   2577888887442   35568896 788665432     010100 011356655 3233


Q ss_pred             hHHHHhHHHHHHHHHHHHHHhhhh
Q 043512          440 AASTMETSAVAAENVARLILSRFF  463 (487)
Q Consensus       440 ~~s~~~~~~~~g~~~a~~i~~~l~  463 (487)
                      .+..|+.+..+|+++|+.|++.++
T Consensus       439 ~g~~i~~ai~sg~~aA~~i~~~~~  462 (463)
T PRK12416        439 YGVGIGACIGNGKNTANEIIATLN  462 (463)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhh
Confidence            344699999999999999998754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.96  E-value=8.4e-27  Score=241.47  Aligned_cols=300  Identities=17%  Similarity=0.194  Sum_probs=183.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNL   98 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl   98 (487)
                      ..||||||||++||+||..|++     +|++|+||||++++|||+++++.+|+.||.|++++.+.  ......+++++|+
T Consensus         1 ~~dvvIIGaG~~GL~aa~~La~-----~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~   75 (492)
T TIGR02733         1 ETSVVVIGAGIAGLTAAALLAK-----RGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGI   75 (492)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCC
Confidence            3689999999999999999999     99999999999999999999999999999999998763  3335578899998


Q ss_pred             CCCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           99 KPKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ........+..+.+.+.+| ..+.+..+.    ..+.+++...++.         +    .+++....+.+......+..
T Consensus        76 ~~~~~~~~d~~~~~~~~dg~~~~~~~~d~----~~~~~~l~~~~p~---------~----~~~~~~~~~~~~~~~~~~~~  138 (492)
T TIGR02733        76 PLPEAKILDPACAVDLPDGSEPIPLWHDP----DRWQKERERQFPG---------S----ERFWQLCSQLHQSNWRFAGR  138 (492)
T ss_pred             CCcccccCCCCcEEEECCCceEeeeecCH----HHHHHHHHHHCCC---------h----HHHHHHHHHHHHHHHHHhhc
Confidence            7432111222234555566 345443221    1122222222211         1    11222222222221111111


Q ss_pred             CC--CCCCHHHHHHH---cC-----ChhhhcccHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh
Q 043512          178 RP--VFESVDEMLKW---AG-----LFNLTARSLEEELIDAR-LSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA  243 (487)
Q Consensus       178 ~~--~~~~~~~~~~~---~~-----~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~  243 (487)
                      .+  ...+..++...   ..     .......++.+++++.+ ......+.++........+.+. +.++++++  +.+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (492)
T TIGR02733       139 DPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA  218 (492)
T ss_pred             CCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc
Confidence            11  12223332210   00     11234578889998764 2233333444433322223334 46666653  3333


Q ss_pred             cCCCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEE-EEEEccC-----ceEecCEEEEccCCCCCCee
Q 043512          244 GSGGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREYY-ELNSTKG-----NSYTCQITVVATPLDELNLH  314 (487)
Q Consensus       244 ~~~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v-~V~~~~G-----~~~~ad~VV~a~~~~~~~~~  314 (487)
                      ....|.|+++||+++|+++|++.+   |++|+++++|++|..+++++ +|.+.+|     +++.||+||+|+|+..+...
T Consensus       219 ~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~l  298 (492)
T TIGR02733       219 QAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLEL  298 (492)
T ss_pred             ccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHh
Confidence            344678999999999999998754   99999999999999987754 5555444     57899999999999865432


Q ss_pred             ecC-CCCC----CCcCeEEEEEEEeeCCcCcccccCCCC
Q 043512          315 FSP-PISI----PERKLQHTHATFVRGALNPAYFGLDGV  348 (487)
Q Consensus       315 l~p-~~~~----~~~~~~~~~~~~~~~~l~~~y~g~~~~  348 (487)
                      +.+ .++.    ...+.+.+.+.++      .|++++..
T Consensus       299 l~~~~~~~~~~~~~~~~~~s~~~~~------v~l~~~~~  331 (492)
T TIGR02733       299 LGPLGLPPGYRKRLKKLPEPSGAFV------FYLGVKRA  331 (492)
T ss_pred             cCcccCCHHHHHHHhcCCCCCceEE------EEEeeccc
Confidence            321 2221    1233445566777      78998874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02268 probable polyamine oxidase

Probab=99.95  E-value=1e-26  Score=237.45  Aligned_cols=249  Identities=18%  Similarity=0.192  Sum_probs=149.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNLK   99 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl~   99 (487)
                      ++|+|||||++||+||+.|.+     +|++|+|||+++++|||++|....|+.+|+|++|++..  +.++.++++++|+.
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~-----~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~   75 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHD-----ASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLP   75 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCc
Confidence            479999999999999999999     99999999999999999999888899999999999864  34577999999986


Q ss_pred             CCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512          100 PKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR  178 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      .........   +.+..+ ..+.+..   +....++.......  ..          .+.++.+    .......     
T Consensus        76 ~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~----------~~~~~~~----~~~~~~~-----  128 (435)
T PLN02268         76 LYRTSGDNS---VLYDHDLESYALFD---MDGNQVPQELVTKV--GE----------TFERILE----ETEKVRD-----  128 (435)
T ss_pred             eEeccCCcc---ccccccccccceec---CCCCCCCHHHHHHH--HH----------HHHHHHH----HHHHHHh-----
Confidence            543221111   111111 1111111   00001111100000  00          0000100    0000000     


Q ss_pred             CCCCCHHHHHHHcCChhhhcccHHHHHHHc----------CCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhcCCC
Q 043512          179 PVFESVDEMLKWAGLFNLTARSLEEELIDA----------RLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAGSGG  247 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~  247 (487)
                                     ....+.++.+|+++.          ++.+.+.+.++.. +...|+.++ +++...... .....+
T Consensus       129 ---------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~-~~~~~g  191 (435)
T PLN02268        129 ---------------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ-EELLEG  191 (435)
T ss_pred             ---------------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC-ccccCC
Confidence                           011233444443221          1222222222222 123455554 344322100 000112


Q ss_pred             CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC---eeecCCCCC
Q 043512          248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPISI  321 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~---~~l~p~~~~  321 (487)
                      +...+.+|+++++++|++  +++|+++++|++|..+++++.|++.+|+++.||+||+|+|+..+.   +.|.|++|.
T Consensus       192 ~~~~~~~G~~~l~~~l~~--~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~  266 (435)
T PLN02268        192 GHGLMVRGYDPVINTLAK--GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPE  266 (435)
T ss_pred             CceeecCCHHHHHHHHhc--cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCH
Confidence            345688899999999976  457999999999999888899999889889999999999999753   567777653

>PLN02529 lysine-specific histone demethylase 1

Probab=99.95  E-value=6.4e-26  Score=238.04  Aligned_cols=246  Identities=19%  Similarity=0.277  Sum_probs=153.4

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--C--eEecccceeEecCChh-HHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--G--QTFEAGASILHPKNYH-TVNF   92 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g--~~~d~G~~~~~~~~~~-~~~~   92 (487)
                      ....+||+|||||++||+||..|++     +|++|+|+|+++++|||+.|...+  |  ..+|+|++|+++...+ +..+
T Consensus       157 ~~~~~~v~viGaG~aGl~aA~~l~~-----~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~l  231 (738)
T PLN02529        157 EGTEGSVIIVGAGLAGLAAARQLLS-----FGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVL  231 (738)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-----cCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHH
Confidence            3456899999999999999999999     999999999999999999999875  3  4899999999987654 7789


Q ss_pred             HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512           93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY  172 (487)
Q Consensus        93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      .+++|+........   +.+...+|.......         ...+.                    .......+++..+.
T Consensus       232 a~~lgl~~~~~~~~---~~~~~~~G~~v~~~~---------~~~~~--------------------~~~~~~l~~~~~l~  279 (738)
T PLN02529        232 ARQLSIPLHKVRDN---CPLYKPDGALVDKEI---------DSNIE--------------------FIFNKLLDKVTELR  279 (738)
T ss_pred             HHHhCCCccccCCC---ceEEeCCCcCcchhh---------hhhHH--------------------HHHHHHHHHHHHHH
Confidence            99999876543221   124444554432210         00000                    00011111111111


Q ss_pred             hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC------CCHHHHHHHHHHHHH-hhcCCCCCcchHHHHHhhh--
Q 043512          173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR------LSPLLMQELVTIITR-INYGQSLSISGLAGAVSLA--  243 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~--  243 (487)
                      .....                 ...+.++.+++++..      +++.. .+++..... ..+...-.++.+....+..  
T Consensus       280 ~~~~~-----------------~~~d~Sl~~~le~~~~~~~~~~t~~e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~  341 (738)
T PLN02529        280 QIMGG-----------------FANDISLGSVLERLRQLYGVARSTEE-RQLLDWHLANLEYANAGCLSDLSAAYWDQDD  341 (738)
T ss_pred             Hhccc-----------------CccCCCHHHHHHHHHhhhccCCCHHH-HHHHHHHHHHhceecCCChHHhhhhHhhhcc
Confidence            11000                 112334455543321      22211 123322221 1122221222222222211  


Q ss_pred             --cCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC---CeeecCC
Q 043512          244 --GSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL---NLHFSPP  318 (487)
Q Consensus       244 --~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~  318 (487)
                        +.....+.+.||+++|+++|++.+  .|++|++|++|..++++|.|++ +++++.||+||+|+|+..+   .+.|.|+
T Consensus       342 ~~e~~G~~~~i~GG~~~Li~aLA~~L--~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVTVPlgVLk~~~I~F~Pp  418 (738)
T PLN02529        342 PYEMGGDHCFLAGGNWRLINALCEGV--PIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCTVPLGVLKKRTIRFEPE  418 (738)
T ss_pred             ccccCCceEEECCcHHHHHHHHHhcC--CEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEECCCHHHHHhccccCCCC
Confidence              112235689999999999999865  6999999999999999998876 4458999999999999975   4678898


Q ss_pred             CCC
Q 043512          319 ISI  321 (487)
Q Consensus       319 ~~~  321 (487)
                      +|.
T Consensus       419 LP~  421 (738)
T PLN02529        419 LPR  421 (738)
T ss_pred             CCH
Confidence            764

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.95  E-value=3.5e-26  Score=234.98  Aligned_cols=251  Identities=18%  Similarity=0.207  Sum_probs=166.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK   99 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~   99 (487)
                      ++|+|||||++||+||+.|++     .|  ++|+|||+++++|||++|...+|+.+|.|+++++..++.+.++++++|+.
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~-----~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~   75 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHK-----KGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLE   75 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----hCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCc
Confidence            479999999999999999999     88  89999999999999999999999999999998888777788999999987


Q ss_pred             CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ......... ..+.+.+|+.+.+..   .....++..+..+.     .+++-       ...    .+......      
T Consensus        76 ~~~~~~~~~-~~~~~~~g~~~~~p~---~~~~~~~~~~~~~~-----~~~~~-------~~~----~~~~~~~~------  129 (451)
T PRK11883         76 DELVANTTG-QSYIYVNGKLHPIPP---GTVMGIPTSIAPFL-----FAGLV-------SPI----GKLRAAAD------  129 (451)
T ss_pred             cceecCCCC-cceEEECCeEEECCC---CCeeccCCCchhhh-----cCCCC-------CHH----HHHHhhCc------
Confidence            543221111 113344555433211   00000110000000     00000       000    00000000      


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH---Hhh-------------
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA---VSL-------------  242 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~---~~~-------------  242 (487)
                       +       .........+.++.+|+.+ .+++.+.+.++.++....|+.+. .+++...+   ..+             
T Consensus       130 -~-------~~~~~~~~~~~s~~e~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK11883        130 -L-------RPPRWKPGQDQSVGAFFRR-RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRK  200 (451)
T ss_pred             -c-------cCCCCCCCCCcCHHHHHHH-hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHh
Confidence             0       0000112345789999976 45677777777888777787765 45543211   100             


Q ss_pred             --hc---CCCC-ceEeecchHHHHHHHHHhcCC-eEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          243 --AG---SGGG-LWAVEGGNWQMAAGLINRSDV-ALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       243 --~~---~~~g-~~~~~gG~~~l~~~l~~~~G~-~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                        ..   .... .++++||+++++++|++.++. +|+++++|++|..+++++.|.+.+|+++.||+||+|+|+....
T Consensus       201 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~  277 (451)
T PRK11883        201 ALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP  277 (451)
T ss_pred             hccccCCCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence              00   0122 357999999999999998866 8999999999999888888888899899999999999998654

>TIGR02730 carot_isom carotene isomerase

Probab=99.95  E-value=3e-25  Score=229.60  Aligned_cols=298  Identities=15%  Similarity=0.142  Sum_probs=186.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC----Ch-hHHHHHHHc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK----NY-HTVNFTKLL   96 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~----~~-~~~~~~~~l   96 (487)
                      +||||||||++||+||..|++     +|++|+|+||++.+||+++++..+|+.||.|++++...    .. .+.+.++.+
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~-----~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~   75 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV-----KGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAV   75 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH-----CCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHc
Confidence            589999999999999999999     99999999999999999999999999999999987632    11 233455555


Q ss_pred             CCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhcc
Q 043512           97 NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFE  176 (487)
Q Consensus        97 gl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                      +....... ....+.+.+.+|..+.+..+    ...+.+++.+.++.         +...+++|++.....+....... 
T Consensus        76 ~~~~~~~~-~~~~~~~~~~~g~~~~~~~d----~~~~~~~l~~~~P~---------~~~~~~~~~~~~~~~~~~~~~~~-  140 (493)
T TIGR02730        76 GRKLETIP-DPVQIHYHLPNGLNVKVHRE----YDDFIQELVAKFPH---------EKEGIRRFYDECWQVFNCLNSME-  140 (493)
T ss_pred             CCcccccC-CCccEEEECCCCeeEeeecC----HHHHHHHHHHHCch---------hHHHHHHHHHHHHHHHHHHHhhh-
Confidence            54332211 11112233445655555322    11133333332222         33456666666554444322110 


Q ss_pred             CCCCCCCHHHHHH---H-----cCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-C-CCcchHHHHHhhhcC-
Q 043512          177 TRPVFESVDEMLK---W-----AGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQ-S-LSISGLAGAVSLAGS-  245 (487)
Q Consensus       177 ~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~-~~~~~~~~~~~~~~~-  245 (487)
                      .. .+..+..+..   .     ..+......++.+++++...++.+. .++..... .++. + .++++.+..+.+... 
T Consensus       141 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~-~~l~~~~~-~~~~~p~~~~p~~~~~~~~~~~~  217 (493)
T TIGR02730       141 LL-SLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLL-KFIDIECF-CWSVVPADQTPMINAGMVFSDRH  217 (493)
T ss_pred             hc-cccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHH-HHHHHHHH-hccCCCcccchhhhHHHhhcccc
Confidence            00 0111111110   0     0112233477788887765555443 23332222 2343 3 356766666554433 


Q ss_pred             CCCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCCC--
Q 043512          246 GGGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPPI--  319 (487)
Q Consensus       246 ~~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~--  319 (487)
                      ..|.|++.||++.++++|.+   +.|++|+++++|++|..+++++ +|++.+|+++.||.||+|++++.+...+.|..  
T Consensus       218 ~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~  297 (493)
T TIGR02730       218 YGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENL  297 (493)
T ss_pred             cceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCcccc
Confidence            34789999999999999976   4599999999999999887665 88888998899999999999986644444432  


Q ss_pred             CC----CCcCeEEEEEEEeeCCcCcccccCCCC
Q 043512          320 SI----PERKLQHTHATFVRGALNPAYFGLDGV  348 (487)
Q Consensus       320 ~~----~~~~~~~~~~~~~~~~l~~~y~g~~~~  348 (487)
                      +.    .....+.+++.++      .|++++..
T Consensus       298 ~~~~~~~~~~~~~s~s~~~------~~l~l~~~  324 (493)
T TIGR02730       298 PKKEKNWQRNYVKSPSFLS------LHLGVKAD  324 (493)
T ss_pred             chhhHHHHhhccCCCceEE------EEEEecCc
Confidence            11    1133455667777      89999875

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.95  E-value=7.9e-26  Score=232.88  Aligned_cols=242  Identities=18%  Similarity=0.202  Sum_probs=164.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC----CCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW----HPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLL   96 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~----G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~l   96 (487)
                      ++||+|||||++||+||++|++     +    |++|+|+|+++++|||++|...+|+.+|.|+++++..++.+.++++++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~-----~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~l   76 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEK-----EIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDL   76 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHh-----cCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHc
Confidence            4789999999999999999999     7    999999999999999999999999999999999999888788999999


Q ss_pred             CCCCCCCCCCCCCceEEEEc-CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512           97 NLKPKDPPSSEDSTAFGIWD-GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        97 gl~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      |+......... ...+.+.+ |....+.    ...          .+.    .+...     ..+.+    +.......+
T Consensus        77 gl~~~~~~~~~-~~~~~~~~~g~~~~~p----~~~----------~~~----~~~~~-----~~~~~----~~~~~~~~~  128 (462)
T TIGR00562        77 GLEHVLVSDAT-GQRYVLVNRGKLMPVP----TKI----------APF----VKTGL-----FSLGG----KLRAGMDFI  128 (462)
T ss_pred             CCCcccccCCC-CceEEEECCCceecCC----CCh----------HHH----hcCCC-----CCchh----hHHhhhhhc
Confidence            98654332111 11233333 4332221    000          000    00000     00000    000000000


Q ss_pred             cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh---------
Q 043512          176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA---------  243 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~---------  243 (487)
                      ..             .  ....+.++.+|+.+. +.+.+.+.++.++....|+.+. .+++...+  ++..         
T Consensus       129 ~~-------------~--~~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~  192 (462)
T TIGR00562       129 RP-------------A--SPGKDESVEEFVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLIL  192 (462)
T ss_pred             cC-------------C--CCCCCcCHHHHHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHH
Confidence            00             0  011236788888765 4566677788888888887765 35543211  1000         


Q ss_pred             ---c--------------CCCC--ceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEE
Q 043512          244 ---G--------------SGGG--LWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITV  303 (487)
Q Consensus       244 ---~--------------~~~g--~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV  303 (487)
                         .              ...|  .++++||+++++++|++.++ ++|+++++|++|..+++++.|++.+|+++.||+||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI  272 (462)
T TIGR00562       193 GMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVV  272 (462)
T ss_pred             HHHhhcccCccccccccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEE
Confidence               0              0012  45799999999999999886 79999999999999888898988888889999999


Q ss_pred             EccCCCCC
Q 043512          304 VATPLDEL  311 (487)
Q Consensus       304 ~a~~~~~~  311 (487)
                      +|+|+...
T Consensus       273 ~t~P~~~~  280 (462)
T TIGR00562       273 VTAPHKAA  280 (462)
T ss_pred             ECCCHHHH
Confidence            99999865

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02576 protoporphyrinogen oxidase

Probab=99.95  E-value=1.3e-25  Score=233.15  Aligned_cols=250  Identities=18%  Similarity=0.230  Sum_probs=165.8

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHH
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTK   94 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~   94 (487)
                      ...+..+||+|||||++||+||++|++     + |++|+|+|+++++|||++|.+.+|+.+|.|++++...+..+..+++
T Consensus         7 ~~~~~~~~v~IIGaGisGL~aA~~L~~-----~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~   81 (496)
T PLN02576          7 SAAASSKDVAVVGAGVSGLAAAYALAS-----KHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVD   81 (496)
T ss_pred             ccccCCCCEEEECcCHHHHHHHHHHHH-----hcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHH
Confidence            344556799999999999999999999     9 9999999999999999999999999999999999987777666766


Q ss_pred             HcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcch-hhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512           95 LLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF-VQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE  173 (487)
Q Consensus        95 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      . |+............++.+.+|+...+..    +...+ ...+.++..                        ++.....
T Consensus        82 ~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~----~~~~~~~~~~~~~~~------------------------~~~~~~~  132 (496)
T PLN02576         82 S-GLRDDLVFPDPQAPRYVVWNGKLRPLPS----NPIDLPTFDLLSAPG------------------------KIRAGLG  132 (496)
T ss_pred             c-CChhheecCCCCceEEEEECCEEEEcCC----ChHHhcCcCcCChhH------------------------HHHHhHH
Confidence            6 7654332211111234445555443321    11000 000000000                        0000000


Q ss_pred             hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hhhh-------
Q 043512          174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLA-------  243 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~-------  243 (487)
                      .+....           . .....+.++.+|+.+. +++...+.++.++....|+.++ ++++...+  ++..       
T Consensus       133 ~~~~~~-----------~-~~~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~  199 (496)
T PLN02576        133 AFGWKR-----------P-PPPGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSI  199 (496)
T ss_pred             HhhccC-----------C-CCCCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcH
Confidence            000000           0 0012467899999875 6788888889999988888766 45543211  1100       


Q ss_pred             ---------c-----------------CCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCE-EEEEE--cc
Q 043512          244 ---------G-----------------SGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREY-YELNS--TK  293 (487)
Q Consensus       244 ---------~-----------------~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~-v~V~~--~~  293 (487)
                               .                 .....+.++||+++|+++|++.++ .+|++|++|++|+.++++ +.|++  .+
T Consensus       200 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~  279 (496)
T PLN02576        200 IGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPE  279 (496)
T ss_pred             HHHHHHhhhhhcccccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCC
Confidence                     0                 001247889999999999999987 789999999999988776 55543  35


Q ss_pred             C-ceEecCEEEEccCCCCCC
Q 043512          294 G-NSYTCQITVVATPLDELN  312 (487)
Q Consensus       294 G-~~~~ad~VV~a~~~~~~~  312 (487)
                      | +++.||+||+|+|+....
T Consensus       280 g~~~~~ad~VI~a~P~~~l~  299 (496)
T PLN02576        280 GKVNVTAKAVVMTAPLYVVS  299 (496)
T ss_pred             CceeEEeCEEEECCCHHHHH
Confidence            5 369999999999998653

>PRK07233 hypothetical protein; Provisional

Probab=99.94  E-value=4.6e-25  Score=225.53  Aligned_cols=243  Identities=18%  Similarity=0.157  Sum_probs=162.4

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKD  102 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~~  102 (487)
                      +|+|||||++||+||++|++     +|++|+|+|+++++||+++++..+|+.+|.|++++...++.+.++++++|+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~-----~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~   75 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK-----RGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKL   75 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCce
Confidence            69999999999999999999     9999999999999999999999999999999999988888888999999986543


Q ss_pred             CCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccCCCCC
Q 043512          103 PPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFETRPVF  181 (487)
Q Consensus       103 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                      ...... . ..+++|....+.     +..          +.    .++.. ..   .   +.....+.....   ..   
T Consensus        76 ~~~~~~-~-~~~~~~~~~~~~-----~~~----------~~----~~~~~~~~---~---~~~~~~~~~~~~---~~---  122 (434)
T PRK07233         76 RWRETK-T-GYYVDGKLYPLG-----TPL----------EL----LRFPHLSL---I---DKFRLGLLTLLA---RR---  122 (434)
T ss_pred             eeccCc-e-EEEECCeEecCC-----CHH----------HH----HcCCCCCH---H---HHHHhHHHHHhh---hh---
Confidence            322111 1 122344322110     000          00    00000 00   0   000000000000   00   


Q ss_pred             CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--HhhhcC------CCCceEe
Q 043512          182 ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VSLAGS------GGGLWAV  252 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~~~~~------~~g~~~~  252 (487)
                              ..........++.+|+.+.. .....+.++..++...++.++ ++++...+  +.....      ....+++
T Consensus       123 --------~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (434)
T PRK07233        123 --------IKDWRALDKVPAEEWLRRWS-GEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYL  193 (434)
T ss_pred             --------cccccccccccHHHHHHHhc-CHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEecc
Confidence                    00111234578889998764 355556678888887788766 46653222  221110      1236689


Q ss_pred             ecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          253 EGGNWQMAAGLINRS---DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       253 ~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      +||++.++++|++.+   |++|+++++|++|+.+++++.+.+.+|++++||+||+|+|+....
T Consensus       194 ~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~~~  256 (434)
T PRK07233        194 EGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPILA  256 (434)
T ss_pred             CCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHHHH
Confidence            999999999998754   899999999999998888775555677789999999999987654

>PLN03000 amine oxidase

Probab=99.94  E-value=1.3e-24  Score=228.65  Aligned_cols=392  Identities=16%  Similarity=0.153  Sum_probs=209.8

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC----CeEecccceeEecCCh-hHHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS----GQTFEAGASILHPKNY-HTVNF   92 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~----g~~~d~G~~~~~~~~~-~~~~~   92 (487)
                      .....+|+|||||++||+||+.|++     .|++|+|+|+++++|||+.|....    ++.+|+|++|+++... ++..+
T Consensus       181 ~~~~~~VvIIGaG~aGL~aA~~L~~-----~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L  255 (881)
T PLN03000        181 QSSKSSVVIVGAGLSGLAAARQLMR-----FGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGII  255 (881)
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHH-----CCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHH
Confidence            3456899999999999999999999     999999999999999999999865    4679999999998754 45577


Q ss_pred             HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512           93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY  172 (487)
Q Consensus        93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      ++++|+.........   .+...+|+...-         .+......                .+..+++. ..++....
T Consensus       256 ~~qlgl~l~~~~~~~---~ly~~~Gk~v~~---------~~~~~ve~----------------~fn~lLd~-~~~lr~l~  306 (881)
T PLN03000        256 ARQLGSSLYKVRDKC---PLYRVDGKPVDP---------DVDLKVEV----------------AFNQLLDK-ASKLRQLM  306 (881)
T ss_pred             HHHcCCceeecCCCC---eEEEeCCcCCch---------hhhhhHHH----------------HHHHHHHH-HHHHHHHh
Confidence            899998755432221   133344543211         00000000                01111111 11111111


Q ss_pred             hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHH-HhhcCCCCCcchHHHHHhhh----cCCC
Q 043512          173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIIT-RINYGQSLSISGLAGAVSLA----GSGG  247 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~----~~~~  247 (487)
                      ..   ...-.++.+.+.          .+.+++. ..+..... .++...+ ...+.....++.+....+..    +...
T Consensus       307 ~~---~~~D~SLg~aLe----------~~~~~~g-~~~t~e~~-~Ll~w~lanLE~~~as~ls~LSl~~wdqd~~~e~~G  371 (881)
T PLN03000        307 GD---VSMDVSLGAALE----------TFRQVSG-NDVATEEM-GLFNWHLANLEYANAGLVSKLSLAFWDQDDPYDMGG  371 (881)
T ss_pred             cc---cCcCCcHHHHHH----------HHHHHHc-ccCCHHHH-HHHHHHHHHHhcccccCHHHHHHHHhhhcccccCCC
Confidence            10   000112222110          1112221 11111111 1111111 11122111222222222211    1122


Q ss_pred             CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC---CeeecCCCCCCCc
Q 043512          248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL---NLHFSPPISIPER  324 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~~~~~~~  324 (487)
                      ..+.++||+++|+++|++.+  .|+++++|++|..+++++.|++.+ +++.||+||+|+|+..+   .+.|.|++|..+.
T Consensus       372 ~~~~v~GG~~~LieaLa~~L--~I~Ln~~Vt~I~~~~dgV~V~~~~-~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~  448 (881)
T PLN03000        372 DHCFLPGGNGRLVQALAENV--PILYEKTVQTIRYGSNGVKVIAGN-QVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKL  448 (881)
T ss_pred             ceEEeCCCHHHHHHHHHhhC--CcccCCcEEEEEECCCeEEEEECC-cEEEeceEEEcCCHHHHhhCceeeCCCCCHHHH
Confidence            36678999999999999987  499999999999999999888754 48999999999999975   4789999875432


Q ss_pred             CeEEEEEEEeeCCcCcccccCCCCCCCCce-----eEeccCCCCCeeEeeeccccCCCCcEEE------------eccCC
Q 043512          325 KLQHTHATFVRGALNPAYFGLDGVSKIPEL-----VATIEDPDLPFTCISVLKQHDENDFTYK------------IFSRK  387 (487)
Q Consensus       325 ~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~-----i~~~~~~~~~~~~i~~~~~~~~~~~~~~------------~~s~~  387 (487)
                      ..-   ..+-.|.+++.++.++... |+..     ....+........+++......+..+.-            ..+++
T Consensus       449 ~AI---~rL~~G~l~KViL~Fd~~F-W~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~pVLvafv~Gd~A~~le~lSde  524 (881)
T PLN03000        449 DCI---KRLGFGLLNKVAMLFPYVF-WSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGGPLLIALVAGEAAHKFETMPPT  524 (881)
T ss_pred             HHH---HcCCCcceEEEEEEeCCcc-ccCCCCceeEEecCCCCCceeEEEeCCCCCCCCcEEEEEecCchhHHhhcCCHH
Confidence            210   1111222333444443331 2110     0100000000001111100000111111            11222


Q ss_pred             CC---CHHHHhhhcccC-------CceEEEecc-------CCCCCCCCCC-------CC-CceeeCCceeeecchh--hh
Q 043512          388 PM---TDTLLDDIFSVR-------KETIRINWG-------AYPHYKAPEV-------FA-PFILDGRHLYYVNAFE--NA  440 (487)
Q Consensus       388 ~l---~~~~l~~~f~~~-------~~~~~~~w~-------~yp~~~~~~~-------~~-p~~l~g~~~~~~~~~~--~~  440 (487)
                      ++   ..++|+++|+..       .....++|.       +|.. ..|+.       ++ |+  ....+||+....  .+
T Consensus       525 E~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~-~~pG~~~~~~d~LaePv--~~GRIfFAGEaTs~~~  601 (881)
T PLN03000        525 DAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSN-VAVGASGDDYDILAESV--GDGRLFFAGEATTRRY  601 (881)
T ss_pred             HHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccC-CCCCCchHHHHHHhCcC--CCCcEEEeehHHhCCC
Confidence            22   257788889621       145568886       4442 22331       22 42  112577773111  23


Q ss_pred             HHHHhHHHHHHHHHHHHHHhhhhcCCCC
Q 043512          441 ASTMETSAVAAENVARLILSRFFSKPSV  468 (487)
Q Consensus       441 ~s~~~~~~~~g~~~a~~i~~~l~~~~~~  468 (487)
                      .++|+||..||.++|+.|++.++.....
T Consensus       602 ~GTVhGAieSGlRAA~eIl~~l~~~~~~  629 (881)
T PLN03000        602 PATMHGAFVTGLREAANMAQSAKARGIR  629 (881)
T ss_pred             CeeHHHHHHHHHHHHHHHHHHhhhccCC
Confidence            4699999999999999999988776554

>PLN02676 polyamine oxidase

Probab=99.94  E-value=3.3e-25  Score=227.00  Aligned_cols=252  Identities=19%  Similarity=0.272  Sum_probs=150.2

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCccceeEEEeeCCeEecccceeEec----CChhHHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRMATVTISGQTFEAGASILHP----KNYHTVNF   92 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~----~~~~~~~~   92 (487)
                      .+..+||+|||||++||+||+.|++     .|. +|+|+|+++++|||+.+....|+.+|.|++|++.    ....+.++
T Consensus        23 ~~~~~~v~IIGaG~sGL~aa~~L~~-----~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l   97 (487)
T PLN02676         23 AKPSPSVIIVGAGMSGISAAKTLSE-----AGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWEL   97 (487)
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH-----cCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHH
Confidence            4457899999999999999999999     998 6999999999999999999999999999999974    34456788


Q ss_pred             HHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512           93 TKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY  172 (487)
Q Consensus        93 ~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      .+++|+.............+...+|+...            ......+.....          .+.++.    ..+....
T Consensus        98 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~~~~~----------~~~~~~----~~~~~~~  151 (487)
T PLN02676         98 ANKLKLRTFYSDFDNLSSNIYKQDGGLYP------------KKVVQKSMKVAD----------ASDEFG----ENLSISL  151 (487)
T ss_pred             HHhcCCceeecCccccceeEECCCCCCCC------------HHHHHHHHHHHH----------HHHHHH----HHHHHhh
Confidence            89998875432211100001111222210            000000010000          000000    0111000


Q ss_pred             hhccCCCCCCCHHHHHHHcCChhhhcccH--HHHHHHcC-CCHHHHHHHHHHHH-HhhcCCCCC-cchHHHHHh---hhc
Q 043512          173 ESFETRPVFESVDEMLKWAGLFNLTARSL--EEELIDAR-LSPLLMQELVTIIT-RINYGQSLS-ISGLAGAVS---LAG  244 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~~~~~~~~~-~~~~g~~~~-~~~~~~~~~---~~~  244 (487)
                      .   . ...               .+.++  .+++.+.. ....-  .....+. ...++.+.+ ++... +..   +..
T Consensus       152 ~---~-~~~---------------~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~S~~~-~~~~~~~~~  209 (487)
T PLN02676        152 S---A-KKA---------------VDISILTAQRLFGQVPKTPLE--MVIDYYNYDYEFAEPPRVTSLKN-TEPNPTFVD  209 (487)
T ss_pred             c---c-cCC---------------CCccHHHHHHHHhhCCCCHHH--HHHHHHhccceeccCccccchhh-cCccccccc
Confidence            0   0 000               01111  11121111 01110  0111111 112444443 33322 111   111


Q ss_pred             CCCCceEe--ecchHHHHHHHHHhc---------CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC-
Q 043512          245 SGGGLWAV--EGGNWQMAAGLINRS---------DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN-  312 (487)
Q Consensus       245 ~~~g~~~~--~gG~~~l~~~l~~~~---------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~-  312 (487)
                      .....+.+  ++|+++|++.|++.+         +.+|++|++|++|..++++|.|++.+|+++.||+||+|+|+..+. 
T Consensus       210 ~g~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~  289 (487)
T PLN02676        210 FGEDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVLQS  289 (487)
T ss_pred             CCCceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHhcc
Confidence            12235555  689999999999865         267999999999999989999999999899999999999999764 


Q ss_pred             --eeecCCCCCC
Q 043512          313 --LHFSPPISIP  322 (487)
Q Consensus       313 --~~l~p~~~~~  322 (487)
                        +.|.|++|..
T Consensus       290 ~~I~F~P~LP~~  301 (487)
T PLN02676        290 DLIKFKPPLPDW  301 (487)
T ss_pred             CceEEeCCCCHH
Confidence              7899988754

>PLN02568 polyamine oxidase

Probab=99.94  E-value=3.6e-25  Score=228.17  Aligned_cols=271  Identities=20%  Similarity=0.228  Sum_probs=151.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-----CeEEEEecCCCccceeEEEeeCCeEecccceeEecC-ChhHHHHHH
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-----PRILMFERNGVVGGRMATVTISGQTFEAGASILHPK-NYHTVNFTK   94 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-----~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~   94 (487)
                      .+||+|||||++||+||+.|++     .|     ++|+|||+++++|||+++....|+.+|.|++|+++. +.++.++++
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~-----~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~   79 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYT-----SSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQ   79 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-----cccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHH
Confidence            4789999999999999999998     66     999999999999999999999999999999999964 456779999


Q ss_pred             HcCCCCCCCCC-CCCCceEEEEcCCeeEEEeccCCCCcc--hhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHh
Q 043512           95 LLNLKPKDPPS-SEDSTAFGIWDGSKFVFKTISVSSTVP--FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKY  171 (487)
Q Consensus        95 ~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (487)
                      ++|+....... ....    + .+....+..  .+....  ....+.....                .+++....+... 
T Consensus        80 ~~g~~~~~~~~~~~~~----~-~~~~~~~~~--~g~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~-  135 (539)
T PLN02568         80 EAGSLESDEPWECMDG----F-PDRPKTVAE--GGFEVDPSIVESISTLFR----------------GLMDDAQGKLIE-  135 (539)
T ss_pred             HhCCccccCcceeccc----c-cccceEEcc--CCcCCCHHHHHHHHHHHH----------------HHHHHhhccccc-
Confidence            99985433211 0000    0 001111111  111110  1111111111                111110000000 


Q ss_pred             hhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC------C------------C-HHHHHHHHHHHHHh--hcCCC
Q 043512          172 YESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR------L------------S-PLLMQELVTIITRI--NYGQS  230 (487)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~------------~-~~~~~~~~~~~~~~--~~g~~  230 (487)
                      -..+ ....+..+.+.... ........++.+++++..      +            . +.....++..+...  .++..
T Consensus       136 ~~~~-~~~d~~~~~~~~~~-~~~~~~~~Sl~~fl~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  213 (539)
T PLN02568        136 PSEV-DEVDFVKLAAKAAR-VCESGGGGSVGSFLRRGLDAYWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSA  213 (539)
T ss_pred             cccc-ccccccccchhccc-hhccCCCCcHHHHHHHHHHHHHhhcccchhhccccchhHHHHHHHHHHHHHHhhcccccc
Confidence            0000 00000000000000 000000123444433210      0            0 01111222222221  12221


Q ss_pred             CCcchHHHHH--hhhcCCCCceEeecchHHHHHHHHHhc-CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccC
Q 043512          231 LSISGLAGAV--SLAGSGGGLWAVEGGNWQMAAGLINRS-DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       231 ~~~~~~~~~~--~~~~~~~g~~~~~gG~~~l~~~l~~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~  307 (487)
                      ..++.+....  .+.+..+..+.+.||++.|+++|++.+ +.+|++|++|++|..+++++.|++.+|+++.||+||+|+|
T Consensus       214 ~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvP  293 (539)
T PLN02568        214 DDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVS  293 (539)
T ss_pred             ccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCC
Confidence            1222211100  011112346789999999999999987 4679999999999999999999999998999999999999


Q ss_pred             CCCCC-------eeecCCCCCC
Q 043512          308 LDELN-------LHFSPPISIP  322 (487)
Q Consensus       308 ~~~~~-------~~l~p~~~~~  322 (487)
                      +....       +.|.|++|..
T Consensus       294 l~vL~~~~~~~~i~F~P~LP~~  315 (539)
T PLN02568        294 LGVLKAGIGEDSGLFSPPLPDF  315 (539)
T ss_pred             HHHHhhccccccceecCCCCHH
Confidence            99754       4798988654

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.93  E-value=5.2e-24  Score=224.54  Aligned_cols=247  Identities=19%  Similarity=0.236  Sum_probs=147.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCe----EecccceeEecCCh-hHHHHH
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQ----TFEAGASILHPKNY-HTVNFT   93 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~----~~d~G~~~~~~~~~-~~~~~~   93 (487)
                      ...++|+|||||++||+||+.|++     .|++|+|+|+++++|||+.+....|.    .+|+|++|+++... ++..++
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~-----~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~  310 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLS-----MGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLA  310 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHH
Confidence            346899999999999999999999     99999999999999999999987653    68999999998653 466899


Q ss_pred             HHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512           94 KLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE  173 (487)
Q Consensus        94 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      +++|+.......   .+.+.+.+|..+...         +.+.....                +..+++.. .++.....
T Consensus       311 ~~lgl~~~~~~~---~~~~~~~dG~~~~~~---------~~~~v~~~----------------f~~lL~~~-~klr~~~~  361 (808)
T PLN02328        311 RQLGLPLHKVRD---ICPLYLPDGKAVDAE---------IDSKIEAS----------------FNKLLDRV-CKLRQAMI  361 (808)
T ss_pred             HHcCCceEecCC---CceEEeCCCcCcchh---------hhhhHHHH----------------HHHHHHHH-HHHHHhhh
Confidence            999986543321   122434445433211         11111000                01111100 00000000


Q ss_pred             hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHH------cCCCHHHHHHHHHHHHH-hhcCCCCCcchHHHHHhhh---
Q 043512          174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELID------ARLSPLLMQELVTIITR-INYGQSLSISGLAGAVSLA---  243 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---  243 (487)
                      ... .                 ..+.++.+++..      ....+... .+....+. ..+.....+..+....+..   
T Consensus       362 ~~~-~-----------------~~D~SLg~~le~~~~~~~~~~~~~e~-~Ll~w~lanlE~~~gs~ls~LSl~~w~qd~~  422 (808)
T PLN02328        362 EEV-K-----------------SVDVNLGTALEAFRHVYKVAEDPQER-MLLNWHLANLEYANASLMSNLSMAYWDQDDP  422 (808)
T ss_pred             hcc-c-----------------ccCcCHHHHHHHHhhhhccCCCHHHH-HHHHHHHHHHhccchhhHHHHHhhhhhcccc
Confidence            000 0                 011223333321      11111111 11111111 1111111111111111111   


Q ss_pred             -cCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC---eeecCCC
Q 043512          244 -GSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN---LHFSPPI  319 (487)
Q Consensus       244 -~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~---~~l~p~~  319 (487)
                       +.....+.+.||++.|+++|++.++  |++|++|++|...+++|.| +.+|+++.||+||+|+|+..+.   +.|.|++
T Consensus       423 ~e~~G~~~~v~GG~~~Li~aLa~~L~--I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~L  499 (808)
T PLN02328        423 YEMGGDHCFIPGGNDTFVRELAKDLP--IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTVPLGVLKKGSIEFYPEL  499 (808)
T ss_pred             ccCCCeEEEECCcHHHHHHHHHhhCC--cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECCCHHHHhhcccccCCCC
Confidence             1112366889999999999999884  8999999999999888877 4567789999999999999754   6788887


Q ss_pred             CC
Q 043512          320 SI  321 (487)
Q Consensus       320 ~~  321 (487)
                      |.
T Consensus       500 P~  501 (808)
T PLN02328        500 PQ  501 (808)
T ss_pred             CH
Confidence            64

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.93  E-value=4.6e-24  Score=210.95  Aligned_cols=248  Identities=21%  Similarity=0.232  Sum_probs=173.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK   99 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~   99 (487)
                      ++|+|||||++||+|||+|+|     ++  .+|+|||+.+++||.++|+..+|+.||.|++.+......+.++++++|++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k-----~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGle   75 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQK-----AGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLE   75 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHH-----hCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcH
Confidence            469999999999999999999     88  99999999999999999999999999999987776667778999999998


Q ss_pred             CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ....+.... ..+.+.+|+...+..   .....++.....             +.....+.+.                 
T Consensus        76 d~l~~~~~~-~~~i~~~gkl~p~P~---~~i~~ip~~~~~-------------~~~~~~~~~~-----------------  121 (444)
T COG1232          76 DKLLWNSTA-RKYIYYDGKLHPIPT---PTILGIPLLLLS-------------SEAGLARALQ-----------------  121 (444)
T ss_pred             HhhccCCcc-cceEeeCCcEEECCc---cceeecCCcccc-------------chhHHHHHHH-----------------
Confidence            877644322 124556666555532   111112211110             0000000100                 


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCC-cchHHHHHhhh------cC-------
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLS-ISGLAGAVSLA------GS-------  245 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~------~~-------  245 (487)
                            ++..........+.++++|++++- +..+.+.++.++++..|+.+.+ +|+-...-...      +.       
T Consensus       122 ------~~~~~~~~~~~~d~sv~~f~r~~f-G~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~  194 (444)
T COG1232         122 ------EFIRPKSWEPKQDISVGEFIRRRF-GEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKK  194 (444)
T ss_pred             ------hhhcccCCCCCCCcCHHHHHHHHH-hHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhh
Confidence                  000001112234577888887653 3666777889999999988764 66541111110      00       


Q ss_pred             ----C----CC-ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCCeee
Q 043512          246 ----G----GG-LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHF  315 (487)
Q Consensus       246 ----~----~g-~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~~~l  315 (487)
                          .    .+ ..+++||++.++++|.+.+..+|+++++|++|.++..++++.+.+|+.+.||.||+|+|++.....+
T Consensus       195 ~~~~~~~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll  273 (444)
T COG1232         195 EGLPKQSLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLL  273 (444)
T ss_pred             ccCcccccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHc
Confidence                0    12 4478999999999999999888999999999999977777888899899999999999998754333

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.93  E-value=2.9e-24  Score=206.72  Aligned_cols=286  Identities=19%  Similarity=0.280  Sum_probs=164.1

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEec-CChhHHHHHHH
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHP-KNYHTVNFTKL   95 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~-~~~~~~~~~~~   95 (487)
                      .....++|+|||||+|||+||.+|.+.    .+.+|+|||+.+|+|||++|+...+..+|+|++|+|+ .+.++.++.++
T Consensus        17 ~~~~~~kIvIIGAG~AGLaAA~rLle~----gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~   92 (498)
T KOG0685|consen   17 KARGNAKIVIIGAGIAGLAAATRLLEN----GFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKE   92 (498)
T ss_pred             hccCCceEEEECCchHHHHHHHHHHHh----CCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHH
Confidence            344567899999999999999999961    4579999999999999999999998899999999999 56678899998


Q ss_pred             cC-CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcc--hhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhh
Q 043512           96 LN-LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP--FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYY  172 (487)
Q Consensus        96 lg-l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (487)
                      .| +..... ..+.     ..+......    .+....  +...+..+...                        +....
T Consensus        93 ~g~~~~~~~-tg~~-----~~~~~~~~~----~g~~V~~~~~~~~~~~~~~------------------------~~~~~  138 (498)
T KOG0685|consen   93 YGDLKLLEV-TGPA-----YVDNFHTRS----NGEVVPEELLDELNEITVT------------------------LSDKL  138 (498)
T ss_pred             hCccceecc-CCcc-----ccceeEEEe----cCccCcHHHHHHHHHHHHh------------------------hhhhc
Confidence            88 221111 1100     001111111    011110  11111111110                        00000


Q ss_pred             hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC---CCHHHHHHHHHHHHHhh----cCCCCCcchHHHHHhhhcC
Q 043512          173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR---LSPLLMQELVTIITRIN----YGQSLSISGLAGAVSLAGS  245 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~  245 (487)
                      +.......-.+..+.++         ..+.+.+....   ....+..+++..+....    ...+++.-++..+..+.+.
T Consensus       139 r~~~~~~~~~SvG~~ln---------~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~~  209 (498)
T KOG0685|consen  139 REAEIAHDEGSVGEYLN---------SEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTEC  209 (498)
T ss_pred             ccccccCccccHHHHHH---------HHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceeec
Confidence            00000011122222221         11222221100   01222233333333321    1112222222333333333


Q ss_pred             CC--CceEeecchHHHHHHHHHhc-------C--CeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEccCCCCCCe
Q 043512          246 GG--GLWAVEGGNWQMAAGLINRS-------D--VALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVATPLDELNL  313 (487)
Q Consensus       246 ~~--g~~~~~gG~~~l~~~l~~~~-------G--~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~~~~~~~~  313 (487)
                      .+  .....+-|+..+.+-|++..       |  .+++++++|.+|..++ +.+.|++.||+.+.||+|||++++..++.
T Consensus       210 ~ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvTvsLGvLk~  289 (498)
T KOG0685|consen  210 PGEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVTVSLGVLKE  289 (498)
T ss_pred             CchhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEEeechhhhh
Confidence            33  33345667899998887732       2  4566679999999875 56899999999999999999999998754


Q ss_pred             ----eecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCCc
Q 043512          314 ----HFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPE  353 (487)
Q Consensus       314 ----~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~  353 (487)
                          .|.|++|..+...   +-.+..|..+++|+-++.+. +|.
T Consensus       290 ~h~~lF~P~LP~~K~~A---Ie~lgfGtv~KiFLE~E~pf-wp~  329 (498)
T KOG0685|consen  290 QHHKLFVPPLPAEKQRA---IERLGFGTVNKIFLEFEEPF-WPS  329 (498)
T ss_pred             hhhhhcCCCCCHHHHHH---HHhccCCccceEEEEccCCC-CCC
Confidence                5889987654333   22344577778888887763 444

>PLN02612 phytoene desaturase

Probab=99.92  E-value=2.1e-22  Score=210.14  Aligned_cols=263  Identities=16%  Similarity=0.167  Sum_probs=162.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCChhHHHHHHHcCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      ...+|+|||||++||+||++|++     +|++|+|+|+++++||++.++.. +|+.+|.|++++.+.++++.++++++|+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~-----~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~  166 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLAD-----AGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGI  166 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-----cCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCC
Confidence            45789999999999999999999     99999999999999999999874 7899999999999888888899999998


Q ss_pred             CCCCCCCCCCCceEEEEcC-CeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           99 KPKDPPSSEDSTAFGIWDG-SKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      .....+.... ..+.+.+. ..+.....+..    ++..+..+...+   .....  .   .+.+    +........  
T Consensus       167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~----~P~~l~~~~~~l---~~~~~--l---s~~~----kl~~~~~~~--  227 (567)
T PLN02612        167 NDRLQWKEHS-MIFAMPNKPGEFSRFDFPEV----LPAPLNGIWAIL---RNNEM--L---TWPE----KIKFAIGLL--  227 (567)
T ss_pred             cccceecccc-eEEEecCCCCceeeCcCchh----cCChhhhhHHHH---hcCcc--C---CHHH----HHHHHHhhh--
Confidence            6543322111 01111111 11111000000    111111111110   00000  0   0000    000000000  


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHH---hhhcCCC--CceE
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAV---SLAGSGG--GLWA  251 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~---~~~~~~~--g~~~  251 (487)
                       +     ............++.++.+|+++.+.++.+.++++..+....++.+. ++++.+.+.   .+.....  ...+
T Consensus       228 -~-----~~~~~~~~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~  301 (567)
T PLN02612        228 -P-----AIVGGQAYVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAF  301 (567)
T ss_pred             -H-----HhcccchhhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEee
Confidence             0     00000001123457899999999999888888888777766555443 455533322   1212122  2445


Q ss_pred             eecch-HHHHHHHHH---hcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCCC
Q 043512          252 VEGGN-WQMAAGLIN---RSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       252 ~~gG~-~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      +.|+. ..+++.|++   +.|++|++|++|++|..++++  ++|++.+|+.+.||+||+|+|+....
T Consensus       302 ~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~  368 (567)
T PLN02612        302 LDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILK  368 (567)
T ss_pred             ecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHH
Confidence            56664 567777766   469999999999999986544  36788889899999999999986543

>PLN02976 amine oxidase

Probab=99.92  E-value=1e-22  Score=219.60  Aligned_cols=413  Identities=19%  Similarity=0.236  Sum_probs=203.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCC---------hhHH
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKN---------YHTV   90 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~---------~~~~   90 (487)
                      .+||+|||||++|+++|+.|++     .|++|+|||+++++||++.+... .|+.+|+|++|+++..         .+..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~-----~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~  767 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQR-----QGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSS  767 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHH-----CCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecccccccccccccHHH
Confidence            4789999999999999999999     99999999999999999999875 5889999999998642         1233


Q ss_pred             HHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHH----HHH-HHHhcCC--hHHHhHHHHH
Q 043512           91 NFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS----VLM-VLRYGLS--LLRMESFTES  163 (487)
Q Consensus        91 ~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~--~~~~~~~~~~  163 (487)
                      .+++++|+..........  .+...+|..+.-         .....+....+.    ... +.+.+..  ..-+..++..
T Consensus       768 ~la~qlGl~l~~~~~~~~--~yd~~~G~~V~~---------e~~~~v~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~  836 (1713)
T PLN02976        768 LICAQLGLELTVLNSDCP--LYDVVTGEKVPA---------DLDEALEAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEY  836 (1713)
T ss_pred             HHHHhcCCccccccCCCc--eeEccCCcCCCH---------HHHHHHHHHHHHHHHHHHHHHhhcccCccCCCHHHHHHH
Confidence            478888987654332211  011122222211         011111111111    000 0000000  0001111111


Q ss_pred             HHHHHHHhh-hhccCC---CCCCC-HHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHh-hc--CCCC-Ccc
Q 043512          164 AVDKFLKYY-ESFETR---PVFES-VDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRI-NY--GQSL-SIS  234 (487)
Q Consensus       164 ~~~~~~~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~--g~~~-~~~  234 (487)
                      .   +.... ......   ..... ..+++..... ........+......+.+. .+.++...+.. .+  +.++ +++
T Consensus       837 ~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~v~G~~~er~s~~~~Ls~~-er~lL~w~~~~lE~~~aa~L~eVS  911 (1713)
T PLN02976        837 A---LKRRRMPRPGVDIDETELGNAADDLYDSAST-GVDGGHCEKESKEDVLSPL-ERRVMNWHFAHLEYGCAALLKEVS  911 (1713)
T ss_pred             H---Hhhhhccccccccchhhcccchhhhhhhhhh-cccccchhhhhHHHhhCHH-HHHHHHHHHHhhcccccCCHHHhh
Confidence            0   00000 000000   00000 0000000000 0000000000000011111 11122222221 12  3333 244


Q ss_pred             hHHHHH--hhhcCCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEe----------CCEEEEEEccCceEecCEE
Q 043512          235 GLAGAV--SLAGSGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYL----------REYYELNSTKGNSYTCQIT  302 (487)
Q Consensus       235 ~~~~~~--~~~~~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~----------~~~v~V~~~~G~~~~ad~V  302 (487)
                      ..+...  .+....+..+.+.||+++|+++|++.+  .|++|++|++|.+.          +++|.|.|.+|+++.||+|
T Consensus       912 l~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L--~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaV  989 (1713)
T PLN02976        912 LPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGL--DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAV  989 (1713)
T ss_pred             hhhhhcccccccCCCceEEeCCCHHHHHHHHHhhC--CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceE
Confidence            332110  011122346789999999999999977  59999999999984          3568899999989999999


Q ss_pred             EEccCCCCCC---eeecCCCCCCCcCeEEEEEEEeeCCcCcccccCCCCCCCCce--eE--eccC-CCCCeeEeeec-cc
Q 043512          303 VVATPLDELN---LHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPEL--VA--TIED-PDLPFTCISVL-KQ  373 (487)
Q Consensus       303 V~a~~~~~~~---~~l~p~~~~~~~~~~~~~~~~~~~~l~~~y~g~~~~~~~~~~--i~--~~~~-~~~~~~~i~~~-~~  373 (487)
                      |+|+|+..+.   +.|.|++|..+...   +..+..|.++++++-++.+. |+..  ..  .... +..+.....+. ..
T Consensus       990 IVTVPLGVLKag~I~FsPPLPe~KqaA---IqrLgfG~lnKV~LeFdrpF-W~~d~d~FG~s~edtdlrG~~~~~wnlr~ 1065 (1713)
T PLN02976        990 LITVPLGCLKAETIKFSPPLPDWKYSS---IQRLGFGVLNKVVLEFPEVF-WDDSVDYFGATAEETDLRGQCFMFWNVKK 1065 (1713)
T ss_pred             EEeCCHHHhhhcccccCCcccHHHHHH---HHhhccccceEEEEEeCCcc-ccCCCCccccccccCCCCceEEEeccCCC
Confidence            9999999753   78999887543221   01111233333333333321 2110  00  0000 00000001110 00


Q ss_pred             cCCCCcEEEe-----------ccCCCC---CHHHHhhhcccC-----CceEEEecc-------CCCCCCCCCC-------
Q 043512          374 HDENDFTYKI-----------FSRKPM---TDTLLDDIFSVR-----KETIRINWG-------AYPHYKAPEV-------  420 (487)
Q Consensus       374 ~~~~~~~~~~-----------~s~~~l---~~~~l~~~f~~~-----~~~~~~~w~-------~yp~~~~~~~-------  420 (487)
                      ..+..-+...           .+++++   ..+.|+++|+..     .....++|.       +|. +.+|+.       
T Consensus      1066 psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYS-y~~PGs~~~d~d~ 1144 (1713)
T PLN02976       1066 TVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYS-YVAIGASGEDYDI 1144 (1713)
T ss_pred             CCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCcccc-CCCCCCCchHHHH
Confidence            0000111111           111111   246788899843     135568885       443 233441       


Q ss_pred             C-CCceeeCCceeeecc--hhhhHHHHhHHHHHHHHHHHHHHhhhhc
Q 043512          421 F-APFILDGRHLYYVNA--FENAASTMETSAVAAENVARLILSRFFS  464 (487)
Q Consensus       421 ~-~p~~l~g~~~~~~~~--~~~~~s~~~~~~~~g~~~a~~i~~~l~~  464 (487)
                      + .|   .+..+||+.-  ...+.++|+||..+|+++|+.|++.+..
T Consensus      1145 LAeP---VggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~ 1188 (1713)
T PLN02976       1145 LGRP---VENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNT 1188 (1713)
T ss_pred             HhCC---CCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHc
Confidence            2 25   3434888731  1133569999999999999999998864

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.91  E-value=7.7e-24  Score=204.18  Aligned_cols=394  Identities=17%  Similarity=0.155  Sum_probs=210.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      +...||||||||++||+||+.|.+     .|++|+|+|+++++|||+.+.+..|...|.|++++.+.......+++++|+
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k-----aG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv   79 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK-----AGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGV   79 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh-----cCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCC
Confidence            567899999999999999999999     999999999999999999999998889999999988866666689999999


Q ss_pred             CCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512           99 KPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR  178 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      .......... + +..+.+....+        ......  ...+.-                  .....+..........
T Consensus        80 ~~~~fi~~g~-~-~~~~~~~~~~~--------p~~~~~--~~~d~~------------------~~~~~~~~~a~~~~~~  129 (450)
T COG1231          80 PLEPFIRDGD-N-VIGYVGSSKST--------PKRSLT--AAADVR------------------GLVAELEAKARSAGEL  129 (450)
T ss_pred             CCCceeccCc-c-ccccccccccc--------chhccc--hhhhhc------------------chhhhhhhhhhccccc
Confidence            8876653221 0 11111111000        000000  000000                  0000000000000000


Q ss_pred             CCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC--CcchH---HHHHhhh------cCC-
Q 043512          179 PVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SISGL---AGAVSLA------GSG-  246 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~---~~~~~~~------~~~-  246 (487)
                      .+..+       ......+..++.+| +.... ..+.   ...-.+..+++..  +...+   .......      ... 
T Consensus       130 ~~~~t-------~~~~e~~~~~~~~W-~~~~~-~~~~---~~~~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~  197 (450)
T COG1231         130 DPGLT-------PEDRELDLESLAAW-KTSSL-RGLS---RDPGARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEI  197 (450)
T ss_pred             CcccC-------cchhhhhhHHHHhh-hhccc-cccc---cCccceeccCCCCcccccchhhhhhhhhhhhccccccccc
Confidence            00001       01112233444455 11000 0000   0011111222111  11111   1111111      111 


Q ss_pred             -CCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-CeeecCCCCCCCc
Q 043512          247 -GGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPISIPER  324 (487)
Q Consensus       247 -~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l~p~~~~~~~  324 (487)
                       .-.+.+.|||+++++++++++|-.|+++++|++|..++++|+|++.+.+++.+|.||||.|+... .++|.|.++.+.+
T Consensus       198 ~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l~~~~~  277 (450)
T COG1231         198 RTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIPLAILGQIDFAPLLPAEYK  277 (450)
T ss_pred             cchhhccCccHHHHHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecCHHHHhhcccCCCCCHHHH
Confidence             12445569999999999999999999999999999999999999988458999999999999974 6889886543211


Q ss_pred             C----eEEEEEEEeeCCcCcccccCCCCCCCCceeEe-------ccCCCCCe---eEeeeccc-cCCCCcEEEeccCCCC
Q 043512          325 K----LQHTHATFVRGALNPAYFGLDGVSKIPELVAT-------IEDPDLPF---TCISVLKQ-HDENDFTYKIFSRKPM  389 (487)
Q Consensus       325 ~----~~~~~~~~~~~~l~~~y~g~~~~~~~~~~i~~-------~~~~~~~~---~~i~~~~~-~~~~~~~~~~~s~~~l  389 (487)
                      .    ..+...+......+. =|+-+.. .....+++       +.++. .+   +.+.++.- ......+|..+++++.
T Consensus       278 ~a~~~~~y~~~~K~~v~f~r-pFWee~~-~l~G~~~tD~~~~~i~~~s~-~~~~G~gVl~g~~~~g~~A~~~~~~~~~~r  354 (450)
T COG1231         278 QAAKGVPYGSATKIGVAFSR-PFWEEAG-ILGGESLTDLGLGFISYPSA-PFADGPGVLLGSYAFGDDALVIDALPEAER  354 (450)
T ss_pred             HHhcCcCcchheeeeeecCc-hhhhhcc-cCCceEeecCCcceEecCcc-ccCCCceEEEeeeeccccceeEecCCHHHH
Confidence            1    111111111000000 1221111 01111111       11111 11   12222111 1223455555554433


Q ss_pred             ---CHHHHhhhcccCC-----ceEEEeccCCCCCCC------CC---CCCCceeeCC-ceeeecchhh---hHHHHhHHH
Q 043512          390 ---TDTLLDDIFSVRK-----ETIRINWGAYPHYKA------PE---VFAPFILDGR-HLYYVNAFEN---AASTMETSA  448 (487)
Q Consensus       390 ---~~~~l~~~f~~~~-----~~~~~~w~~yp~~~~------~~---~~~p~~l~g~-~~~~~~~~~~---~~s~~~~~~  448 (487)
                         ....+.++|++..     .....+|+.+|....      |+   .+-|...... .++++ +.|+   +...||||.
T Consensus       355 ~~~vl~~l~~~~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~A-gtEhas~~~Gw~eGAi  433 (450)
T COG1231         355 RQKVLARLAKLFGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFA-GTEHASEFGGWLEGAI  433 (450)
T ss_pred             HHHHHHhHhhhCChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEe-eecccccccchhHHHH
Confidence               3577888887442     124577876662222      11   1111111222 35555 4443   346899999


Q ss_pred             HHHHHHHHHHHhhhh
Q 043512          449 VAAENVARLILSRFF  463 (487)
Q Consensus       449 ~~g~~~a~~i~~~l~  463 (487)
                      .+|+++|..|...+.
T Consensus       434 ~Sg~~AA~ei~~~l~  448 (450)
T COG1231         434 RSGQRAAAEIHALLS  448 (450)
T ss_pred             HHHHHHHHHHHHhhc
Confidence            999999999988764

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.91  E-value=2.4e-22  Score=206.21  Aligned_cols=256  Identities=16%  Similarity=0.177  Sum_probs=156.1

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      +|+|||||++||+||+.|++     +|++|+|+|+++++||++++.. .+|+.+|.|++++...++++.++++++|+...
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~-----~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~   75 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD-----AGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDR   75 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccc
Confidence            59999999999999999999     9999999999999999999985 57899999999999888888899999998654


Q ss_pred             CCCCCCCCceEEEE-c--CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512          102 DPPSSEDSTAFGIW-D--GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR  178 (487)
Q Consensus       102 ~~~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      .......   ..+. .  +........ +.    .+..+..+..    +.+.. ..   ..+.+.. .........    
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~----~~~~~-~~---~~~~~~~-~~~~~~~~~----  134 (453)
T TIGR02731        76 LQWKSHS---MIFNQPDKPGTFSRFDF-PD----IPAPFNGVAA----ILRNN-DM---LTWPEKI-KFAIGLLPA----  134 (453)
T ss_pred             eeecCCc---eEEecCCCCcceeeccC-CC----CCCCHHHHHH----HhcCc-CC---CCHHHHH-HHHHHhHHH----
Confidence            3221111   1111 1  111111000 00    0011000000    00000 00   0000000 000000000    


Q ss_pred             CCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHH---hhhcCCCC--ceEe
Q 043512          179 PVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAV---SLAGSGGG--LWAV  252 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~---~~~~~~~g--~~~~  252 (487)
                             ............+.++.+|+++.+.++.+.++++.++....++.++ ++|+.+.+-   .+.....|  ..+.
T Consensus       135 -------~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~  207 (453)
T TIGR02731       135 -------IVRGQKYVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFL  207 (453)
T ss_pred             -------HhcCccchhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEee
Confidence                   0000011123467899999999999999888888888887776665 456544321   11211122  2234


Q ss_pred             ecc-hHHHHHHHHHh---cCCeEEeCCceEEEEEeCC-EE-EEEEccCc-----eEecCEEEEccCCCCC
Q 043512          253 EGG-NWQMAAGLINR---SDVALHLHEEIESISYLRE-YY-ELNSTKGN-----SYTCQITVVATPLDEL  311 (487)
Q Consensus       253 ~gG-~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~-~v-~V~~~~G~-----~~~ad~VV~a~~~~~~  311 (487)
                      .|+ ++++++.|.+.   .|++|++|++|++|..+++ ++ +|++.+|+     ++.||.||+|+|++..
T Consensus       208 ~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~  277 (453)
T TIGR02731       208 DGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIF  277 (453)
T ss_pred             cCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHH
Confidence            443 45666666553   4999999999999986543 34 67776665     7999999999999763

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.90  E-value=1.4e-21  Score=200.25  Aligned_cols=265  Identities=13%  Similarity=0.091  Sum_probs=158.8

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      +|+|||||++||+||+.|++     .|++|+|+|+++++||+++++. .+|+.+|.|++++...+.++.++++++|+...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~-----~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~   75 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD-----AGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDN   75 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCccc
Confidence            58999999999999999999     9999999999999999999974 67999999999999888888899999998755


Q ss_pred             CCCCCCCCceEEEE-cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          102 DPPSSEDSTAFGIW-DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       102 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      .......  ..... ++....+..   +..  +..++    .....++++.. +...-.+...... .. .....     
T Consensus        76 ~~~~~~~--~~~~~~~~~~~~~~~---~~~--~~~P~----~~~~~~l~~~~ls~~dklr~~~~~~-~~-~~~~~-----  137 (474)
T TIGR02732        76 LLLKEHT--HTFVNKGGDIGELDF---RFA--TGAPF----NGLKAFFTTSQLKWVDKLRNALALG-TS-PIVRG-----  137 (474)
T ss_pred             cccccce--eEEEcCCCccccccc---CCC--CCCch----hhhHHHhcCCCCCHHHHHHHHHHhh-hh-HHHhh-----
Confidence            4322111  11111 122111110   000  00110    01111111110 1000000000000 00 00000     


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH-----HHhhhcCCCCceEee
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG-----AVSLAGSGGGLWAVE  253 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-----~~~~~~~~~g~~~~~  253 (487)
                       +.......  .......+.++.+|+++.+.++...+.++.+++...++.+. ++|+...     .+..........+++
T Consensus       138 -~~~~~~~~--~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~  214 (474)
T TIGR02732       138 -LVDYDGAM--KTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLK  214 (474)
T ss_pred             -ccccchhh--hhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeec
Confidence             00000000  01113356899999999999888788899988888777665 4665322     111111122456788


Q ss_pred             cchHH-HHHHHHH---hcCCeEEeCCceEEEEEeC--C---EE-EEEEccC---ceEecCEEEEccCCCCCCe
Q 043512          254 GGNWQ-MAAGLIN---RSDVALHLHEEIESISYLR--E---YY-ELNSTKG---NSYTCQITVVATPLDELNL  313 (487)
Q Consensus       254 gG~~~-l~~~l~~---~~G~~i~~~~~V~~I~~~~--~---~v-~V~~~~G---~~~~ad~VV~a~~~~~~~~  313 (487)
                      ||... +.+.|.+   +.|++|+++++|++|..++  +   ++ +|++.+|   +.+.||+||+|+|++....
T Consensus       215 g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~  287 (474)
T TIGR02732       215 GSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKR  287 (474)
T ss_pred             CCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHh
Confidence            87655 3333433   3699999999999999864  2   23 4555444   4689999999999986543

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=2.8e-22  Score=203.07  Aligned_cols=265  Identities=20%  Similarity=0.205  Sum_probs=145.4

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE-ecccceeEecCCh-hHHHHHH
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT-FEAGASILHPKNY-HTVNFTK   94 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~-~d~G~~~~~~~~~-~~~~~~~   94 (487)
                      .....++|||||||++||+||..|.+     .|++|+|||+++|+|||++|++..+.. +|+|++|+++.+. ++..+.+
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~-----~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~   85 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQD-----FGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSK   85 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHH-----cCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHH
Confidence            44456799999999999999999999     999999999999999999999987666 9999999998776 6778999


Q ss_pred             HcCCCCCCCCCCCCCceEEEEcCCe-eEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512           95 LLNLKPKDPPSSEDSTAFGIWDGSK-FVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE  173 (487)
Q Consensus        95 ~lgl~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      ++|++.........   +....+.. .....    ..  .......+......++                    .....
T Consensus        86 qlgl~~~~~~~~~~---l~~~~~~~~~~~~d----~~--~~~~~~~l~~~~~~~~--------------------~~~~~  136 (501)
T KOG0029|consen   86 QLGLELYKVRDTCP---LFNENGGESDKVFD----DF--VEQEFNRLLDDASNLE--------------------QRLDN  136 (501)
T ss_pred             HhCcccceeccccc---ccccCCcccccccc----cc--hhhhhHHHHHHHhhhh--------------------hhhhh
Confidence            99998765433221   11111211 11000    00  0011111111111111                    10000


Q ss_pred             hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhc----CCCCc
Q 043512          174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAG----SGGGL  249 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~g~  249 (487)
                      . .......+..+.+........ ......++...+.....   +..-+....+.............+...    .....
T Consensus       137 ~-~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  211 (501)
T KOG0029|consen  137 E-IIGISDDSFGEALEAFLSASR-LMKTLLELLLEGEADKV---LQWHLVNLELTFIAHLENASARLWDQDELFGGGGIH  211 (501)
T ss_pred             c-ccccccccHHHHHHhHHHHHH-HHHhhHHHhhhhhhhHH---HHHHHHHHHHHhhccHhHhhHHhhhhhhhcccccch
Confidence            0 000000111111100000000 00001111111110000   000000111111111111112222221    11123


Q ss_pred             eEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCC---CeeecCCCCCC
Q 043512          250 WAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDEL---NLHFSPPISIP  322 (487)
Q Consensus       250 ~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~~~~~  322 (487)
                      ....+|+..++.++++  |.+|+++..|.+|...+++ +.+++.++..+.+|+||+++|+..+   .+.|.|++|..
T Consensus       212 ~~~~~G~~~v~~~la~--~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~  286 (501)
T KOG0029|consen  212 LLMKGGYEPVVNSLAE--GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSPPLPRW  286 (501)
T ss_pred             hHhhCCccHHHhhcCC--CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCCCCcHH
Confidence            4678999999999987  7799999999999987765 3455555556999999999999974   47899998764

>PLN02487 zeta-carotene desaturase

Probab=99.90  E-value=8e-21  Score=196.02  Aligned_cols=267  Identities=15%  Similarity=0.109  Sum_probs=170.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      ..++|+|||||++||++|+.|++     .|++|+|+|+++++||+++++. .+|+.+|.|.+++...+.++.++++++|+
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~-----~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl  148 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLD-----QGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGA  148 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-----CCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCC
Confidence            34699999999999999999999     9999999999999999999996 57899999999999888888899999998


Q ss_pred             CCCCCCCCCCCceEEEE-cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhcc
Q 043512           99 KPKDPPSSEDSTAFGIW-DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFE  176 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                      ..........  ...+. +|..-.+....+     +...    ......++++.. +.          .+++......+ 
T Consensus       149 ~~~~~~~~~~--~~~~~~~g~~~~~~~~~p-----~~~p----l~~~~~~l~~~~Ls~----------~dklr~~~~l~-  206 (569)
T PLN02487        149 DENLLVKDHT--HTFVNKGGDVGELDFRFP-----VGAP----LHGIKAFLTTNQLEP----------YDKARNALALA-  206 (569)
T ss_pred             cccccccccc--eeEEecCCEEeeeccCCC-----CCch----hhhHHHHHcCCCCCH----------HHHHhhccccc-
Confidence            7654332211  11112 222111100000     1111    111112222211 10          00111000000 


Q ss_pred             CCCCCCCH-HHHHH----HcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH--HHhhh--cCC
Q 043512          177 TRPVFESV-DEMLK----WAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG--AVSLA--GSG  246 (487)
Q Consensus       177 ~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--~~~~~--~~~  246 (487)
                          .... ..+..    ........+.++.+|+.+++.++...+.++.+++...++.+. ++|+...  .+.+.  ...
T Consensus       207 ----~~~~~~al~~~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~  282 (569)
T PLN02487        207 ----TSPVVRALVDPDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFATKTE  282 (569)
T ss_pred             ----ccchhhhccCccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCC
Confidence                0000 00000    001123456899999999998887888899999988888777 4775433  23321  222


Q ss_pred             CC-ceEeecchHH-HHHHHHH---hcCCeEEeCCceEEEEEeC--CE---E-EEEE---ccCceEecCEEEEccCCCCCC
Q 043512          247 GG-LWAVEGGNWQ-MAAGLIN---RSDVALHLHEEIESISYLR--EY---Y-ELNS---TKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       247 ~g-~~~~~gG~~~-l~~~l~~---~~G~~i~~~~~V~~I~~~~--~~---v-~V~~---~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      .+ ..+++||... +++.+++   +.|++|+++++|++|..++  ++   + +|++   .+++.+.+|.||+|+|++...
T Consensus       283 ~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~  362 (569)
T PLN02487        283 ASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIK  362 (569)
T ss_pred             cceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHH
Confidence            23 6789999995 8888865   4599999999999999873  22   3 6666   334578999999999998653


Q ss_pred             eeecCC
Q 043512          313 LHFSPP  318 (487)
Q Consensus       313 ~~l~p~  318 (487)
                       .+.|+
T Consensus       363 -~Llp~  367 (569)
T PLN02487        363 -RLLPE  367 (569)
T ss_pred             -HhCCc
Confidence             34454

>PRK07208 hypothetical protein; Provisional

Probab=99.89  E-value=1.1e-21  Score=202.87  Aligned_cols=248  Identities=19%  Similarity=0.169  Sum_probs=161.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK   99 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~   99 (487)
                      ..+||+|||||++||+||++|++     +|++|+|+|+++++||++.+...+|+.+|.|++++...+..+.+++++++..
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~-----~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~   77 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLK-----RGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPD   77 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCC
Confidence            45789999999999999999999     9999999999999999999999999999999999998888888999999852


Q ss_pred             CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      .........  ...+++|+.+.+..           ..   .+.+.   ..  ....   .... ...+..  .      
T Consensus        78 ~~~~~~~~~--~~~~~~g~~~~~p~-----------~~---~~~l~---~~--~~~~---~~~~-~~~~~~--~------  124 (479)
T PRK07208         78 DDFLLRPRL--SRIYYRGKFFDYPL-----------KA---FDALK---NL--GLWR---TAKC-GASYLK--A------  124 (479)
T ss_pred             Ccccccccc--ceEEECCEEecCCc-----------ch---hHHHH---hC--CHhH---HHHH-HHHHHH--H------
Confidence            221111111  12334554333210           00   00000   00  0000   0000 000000  0      


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH-----------Hh-hhcC-
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA-----------VS-LAGS-  245 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-----------~~-~~~~-  245 (487)
                                 .........++.+|+.+. +...+.+.++.++....|+.++ +++....+           +. .... 
T Consensus       125 -----------~~~~~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  192 (479)
T PRK07208        125 -----------RLRPRKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRS  192 (479)
T ss_pred             -----------hcCCCCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhc
Confidence                       000011357889998864 4567777788888888888766 46553211           10 0000 


Q ss_pred             --------------CCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEE--EEEE--ccCc--eEecCEE
Q 043512          246 --------------GGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREYY--ELNS--TKGN--SYTCQIT  302 (487)
Q Consensus       246 --------------~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v--~V~~--~~G~--~~~ad~V  302 (487)
                                    .....+|+||++.++++|++.+   |++|++|++|++|..+++++  .+..  .+|+  ++.||+|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~V  272 (479)
T PRK07208        193 LGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQV  272 (479)
T ss_pred             ccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEE
Confidence                          1124578999999999998754   89999999999999987653  3332  2353  5899999


Q ss_pred             EEccCCCCCCeeecC
Q 043512          303 VVATPLDELNLHFSP  317 (487)
Q Consensus       303 V~a~~~~~~~~~l~p  317 (487)
                      |+|+|++.+...+.|
T Consensus       273 I~a~p~~~l~~~l~~  287 (479)
T PRK07208        273 ISSMPLRELVAALDP  287 (479)
T ss_pred             EECCCHHHHHHhcCC
Confidence            999999865433433

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.88  E-value=3.2e-21  Score=177.76  Aligned_cols=257  Identities=16%  Similarity=0.211  Sum_probs=178.4

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe----eCCeEecccceeEec-CChhHH
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT----ISGQTFEAGASILHP-KNYHTV   90 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~----~~g~~~d~G~~~~~~-~~~~~~   90 (487)
                      ....+.++|+|||+|++|||||+.|++      -++||+||+.+++||+++|..    .+|..+|.|..++.. .++++.
T Consensus         3 ~~~~~r~~IAVIGsGisGLSAA~~Ls~------rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~   76 (447)
T COG2907           3 NQPHPRRKIAVIGSGISGLSAAWLLSR------RHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLT   76 (447)
T ss_pred             CCCCCCcceEEEcccchhhhhHHhhhc------ccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHH
Confidence            445567899999999999999999997      469999999999999999984    346789999999988 677888


Q ss_pred             HHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHH
Q 043512           91 NFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLK  170 (487)
Q Consensus        91 ~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      .+++.+|.+.+.....   ..+. +|+..+.|..... -..-+.+.- .+   +         ..++..++++.+..+..
T Consensus        77 ~Lf~~iGv~t~as~Ms---f~v~-~d~gglEy~g~tg-l~~L~aqk~-n~---l---------~pRf~~mlaeiLrf~r~  138 (447)
T COG2907          77 RLFKTIGVDTKASFMS---FSVS-LDMGGLEYSGLTG-LAGLLAQKR-NL---L---------RPRFPCMLAEILRFYRS  138 (447)
T ss_pred             HHHHHcCCCCccccee---EEEE-ecCCceeeccCCC-ccchhhccc-cc---c---------chhHHHHHHHHHHHhhh
Confidence            9999999887654322   1122 3556677753210 000011110 00   0         01122223332222221


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH--HHHHhhhc---
Q 043512          171 YYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL--AGAVSLAG---  244 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~---  244 (487)
                      ..          ...+      .......++.+||+.+++++.|.++++.++....+..+. ++..+  ..++-+..   
T Consensus       139 ~~----------~~~d------~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~~nhG  202 (447)
T COG2907         139 DL----------APSD------NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFTDNHG  202 (447)
T ss_pred             hc----------cchh------hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHHhccC
Confidence            00          0011      112346889999999999999999988888887777765 44332  22222221   


Q ss_pred             ----CCCCce-EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          245 ----SGGGLW-AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       245 ----~~~g~~-~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                          .....| .+.||..+.++.|.+..+++|+++++|..|.+-.+++.|...+|++-++|.||+|+.+.+.-
T Consensus       203 ll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth~dqAl  275 (447)
T COG2907         203 LLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATHPDQAL  275 (447)
T ss_pred             ceecCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeecChHHHH
Confidence                133466 57899999999999999999999999999999888888877889999999999999988653

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.85  E-value=3.2e-19  Score=181.56  Aligned_cols=239  Identities=15%  Similarity=0.119  Sum_probs=151.7

Q ss_pred             HHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE--ecccceeEecCChhHHHHHHHcCCCCCCCCCCCCCceE
Q 043512           35 SLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT--FEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAF  112 (487)
Q Consensus        35 saA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~--~d~G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~  112 (487)
                      +||+.|++     +|++|+|||+++++||+++|+..+|+.  +|.|+++++..+..+.++++++|+..........   +
T Consensus         1 ~AA~~L~~-----~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~---~   72 (419)
T TIGR03467         1 SAAVELAR-----AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLP---L   72 (419)
T ss_pred             ChHHHHHh-----CCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCC---c
Confidence            58999999     999999999999999999999988654  9999999998888888999999987653311111   1


Q ss_pred             EEE--cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhc-CChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHH
Q 043512          113 GIW--DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYG-LSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLK  189 (487)
Q Consensus       113 ~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      .+.  ++....+...+      ++.+.    .....+.+.. .+.....++..    .+.....                
T Consensus        73 ~~~~~~~~~~~~~~~~------~~~p~----~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~----------------  122 (419)
T TIGR03467        73 PFYDPGGRLSRLRLSR------LPAPL----HLARGLLRAPGLSWADKLALAR----ALLALRR----------------  122 (419)
T ss_pred             ceecCCCCceeecCCC------CCCCH----HHHHHHhcCCCCCHHHHHHHHH----HHHHHHh----------------
Confidence            222  22221221100      00000    0000000000 01110001100    0000000                


Q ss_pred             HcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhh----hc--CCCCceEeecchHHHHHH
Q 043512          190 WAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSL----AG--SGGGLWAVEGGNWQMAAG  262 (487)
Q Consensus       190 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~----~~--~~~g~~~~~gG~~~l~~~  262 (487)
                       .........++.+|+++.+.++.+.+.++.++....|+.++ ++++...+..+    ..  ...+.++++||+++++..
T Consensus       123 -~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~  201 (419)
T TIGR03467       123 -TRFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPE  201 (419)
T ss_pred             -cCccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHH
Confidence             00112356899999999888888877788888887787766 47664333221    11  122467899999887655


Q ss_pred             -HHH---hcCCeEEeCCceEEEEEeCCEEEEEE-ccCceEecCEEEEccCCCCCC
Q 043512          263 -LIN---RSDVALHLHEEIESISYLREYYELNS-TKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       263 -l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~~~~ad~VV~a~~~~~~~  312 (487)
                       |++   +.|++|++|++|++|..+++++.+.. .+|+++.||.||+|+|++...
T Consensus       202 ~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~  256 (419)
T TIGR03467       202 PARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAA  256 (419)
T ss_pred             HHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHH
Confidence             655   34999999999999999888764433 467789999999999998754

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.83  E-value=1.8e-19  Score=183.98  Aligned_cols=65  Identities=29%  Similarity=0.380  Sum_probs=58.3

Q ss_pred             hhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--CeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           31 IGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        31 iaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      |+||+||++|++     +|++|+|||+++++|||++|.+.+  |+.+|.|+++++..+..+..++.++++..
T Consensus         1 iaGL~aA~~L~~-----~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~~~~   67 (450)
T PF01593_consen    1 IAGLAAAYYLAK-----AGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELGLEL   67 (450)
T ss_dssp             HHHHHHHHHHHH-----TTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHTHHT
T ss_pred             ChHHHHHHHHHh-----CCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhhhcc
Confidence            699999999999     999999999999999999999999  99999999999988777778888888753

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.82  E-value=1.2e-19  Score=162.29  Aligned_cols=165  Identities=22%  Similarity=0.354  Sum_probs=121.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      .+|+|||+||+||+||+.|+.     +|++|+||||..-+|||+.|.+..+..||.|+++|...+..+.++.+.+.-...
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~-----aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~gl   76 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALRE-----AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGL   76 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHh-----cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCc
Confidence            469999999999999999999     999999999999999999999999999999999998888765566665542211


Q ss_pred             CCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCCC
Q 043512          102 DPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVF  181 (487)
Q Consensus       102 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (487)
                      ..          .|....+.+..+                                                   ...  
T Consensus        77 V~----------~W~~~~~~~~~~---------------------------------------------------~~~--   93 (331)
T COG3380          77 VD----------VWTPAVWTFTGD---------------------------------------------------GSP--   93 (331)
T ss_pred             ee----------eccccccccccC---------------------------------------------------CCC--
Confidence            10          010000011000                                                   000  


Q ss_pred             CCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhcCCCCceEeecchHHHHH
Q 043512          182 ESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAA  261 (487)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gG~~~l~~  261 (487)
                      .+                                                             .....|.-.-||.+|++
T Consensus        94 ~~-------------------------------------------------------------~d~~pyvg~pgmsalak  112 (331)
T COG3380          94 PR-------------------------------------------------------------GDEDPYVGEPGMSALAK  112 (331)
T ss_pred             CC-------------------------------------------------------------CCCCccccCcchHHHHH
Confidence            00                                                             00011444567999999


Q ss_pred             HHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC-ceEecCEEEEccCCCCCCeeecC
Q 043512          262 GLINRSDVALHLHEEIESISYLREYYELNSTKG-NSYTCQITVVATPLDELNLHFSP  317 (487)
Q Consensus       262 ~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~a~~~~~~~~~l~p  317 (487)
                      .|+..+  +|.++++|++|.+.++.+++.+++| +...+|.||+|.|.+++...|.+
T Consensus       113 ~LAtdL--~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~  167 (331)
T COG3380         113 FLATDL--TVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTT  167 (331)
T ss_pred             HHhccc--hhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhcCc
Confidence            998877  7889999999999999999999665 56889999999999987655544

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.80  E-value=4.1e-18  Score=171.16  Aligned_cols=251  Identities=11%  Similarity=0.144  Sum_probs=149.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--------------------CeEeccc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--------------------GQTFEAG   78 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--------------------g~~~d~G   78 (487)
                      ++.+||||||+|++|+.+|..|++     +|++|+++|+++..||+.+|++..                    .+.+|+.
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~-----~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~   76 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSV-----NGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLI   76 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhh-----CCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccC
Confidence            457999999999999999999999     999999999999999999997432                    2346667


Q ss_pred             ceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEE--EcCCeeEEEeccCCCCcc-hhhhhHHHHHHHHHHHHhcCChH
Q 043512           79 ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGI--WDGSKFVFKTISVSSTVP-FVQKIVSLANSVLMVLRYGLSLL  155 (487)
Q Consensus        79 ~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  155 (487)
                      +.++...... ..++...++..........  ...+  .+|+....    |.+... |...+..+.++           .
T Consensus        77 Pk~l~~~G~l-v~lL~~s~v~ryleF~~l~--g~~v~~~~g~~~~v----P~s~~~~~~s~ll~l~eK-----------r  138 (443)
T PTZ00363         77 PKFIMASGEL-VKILLHTDVTRYLEFKVID--GSYVYQKEGKIHKV----PATDMEALSSPLMGFFEK-----------N  138 (443)
T ss_pred             CeeeecCChH-HHHHhhcCccceeeeEEec--eEEEEecCCeEEEC----CCCHHHHhhCCCcchhhH-----------H
Confidence            7776665533 3566666665543321111  1222  23332222    111111 22222222221           1


Q ss_pred             HHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccc
Q 043512          156 RMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SIS  234 (487)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  234 (487)
                      ++.+|+.        ....+..    .... .+   .-..+...++.+|+++.++++...+.+.. ++.......+ +.+
T Consensus       139 ~l~kfl~--------~v~~~~~----~~~~-~~---~~~~~d~~T~~d~L~~~~ls~~~~d~i~~-~ial~~~~~~~~~p  201 (443)
T PTZ00363        139 RCKNFLQ--------YVSNYDE----NDPE-TH---KGLNLKTMTMAQLYKKFGLEDNTIDFVGH-AVALYTNDDYLNKP  201 (443)
T ss_pred             HHHHHHH--------HHHhhcc----CChh-hh---cccCcccCCHHHHHHHhCCCHHHHHHHHH-HHHhhcccccccCC
Confidence            2222222        2111111    0110 01   11123468999999999998876653322 2222211111 222


Q ss_pred             hHHHHH-------hhhcCCC-CceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCC-E-EEEEEccCceEecCE
Q 043512          235 GLAGAV-------SLAGSGG-GLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLRE-Y-YELNSTKGNSYTCQI  301 (487)
Q Consensus       235 ~~~~~~-------~~~~~~~-g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~-~-v~V~~~~G~~~~ad~  301 (487)
                      +..++.       ++..+.. +..+|.+|+++|+++|++   ..|++++++++|++|..+++ + ++|++.+|+++.|+.
T Consensus       202 a~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~  281 (443)
T PTZ00363        202 AIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKL  281 (443)
T ss_pred             HHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCE
Confidence            222211       1122222 346889999999999985   46999999999999988753 4 589999999999999


Q ss_pred             EEEccCCC
Q 043512          302 TVVATPLD  309 (487)
Q Consensus       302 VV~a~~~~  309 (487)
                      ||++....
T Consensus       282 VV~~~s~~  289 (443)
T PTZ00363        282 VICDPSYF  289 (443)
T ss_pred             EEECcccc
Confidence            99976653

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.77  E-value=1.2e-17  Score=159.22  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=65.0

Q ss_pred             CCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCCC
Q 043512          247 GGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPPI  319 (487)
Q Consensus       247 ~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~  319 (487)
                      ++..||.||+++++.++++   +.|++|.+++.|.+|..+++++ +|+++||+.+.++.||+|+.+|.+..+|.|+.
T Consensus       254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e  330 (561)
T KOG4254|consen  254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGE  330 (561)
T ss_pred             CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCc
Confidence            3455999999999999976   4699999999999999998875 99999999999999999999999987777764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.63  E-value=7.3e-16  Score=112.96  Aligned_cols=66  Identities=33%  Similarity=0.563  Sum_probs=58.5

Q ss_pred             EECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHc
Q 043512           26 IIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLL   96 (487)
Q Consensus        26 IIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~l   96 (487)
                      |||||++||+||+.|++     +|++|+|+|+++++||++++...+|+.+|.|++++...  ++++.+++++|
T Consensus         1 IiGaG~sGl~aA~~L~~-----~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L   68 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAK-----AGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL   68 (68)
T ss_dssp             EES-SHHHHHHHHHHHH-----TTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred             CEeeCHHHHHHHHHHHH-----CCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence            89999999999999999     99999999999999999999999999999999999874  46677777654

...

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.62  E-value=2.1e-14  Score=145.87  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe--eCCeEecccceeEecCChhHHHHH
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT--ISGQTFEAGASILHPKNYHTVNFT   93 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~   93 (487)
                      +...+.++|+|||||+||||||++|++..+ -+|.+|+|||+++.+||++.+..  .+|+.++.|++. ......+.+++
T Consensus        17 ~~~~~~~~a~IIGaGiAGLAAA~~L~~dg~-~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll   94 (576)
T PRK13977         17 PEGVDNKKAYIIGSGLASLAAAVFLIRDGQ-MPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLF   94 (576)
T ss_pred             CCCCCCCeEEEECCCHHHHHHHHHHHHccC-CCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHH
Confidence            344456899999999999999999999210 02689999999999999998754  678999888774 44455566777


Q ss_pred             HHc
Q 043512           94 KLL   96 (487)
Q Consensus        94 ~~l   96 (487)
                      +.+
T Consensus        95 ~~i   97 (576)
T PRK13977         95 RSI   97 (576)
T ss_pred             Hhc
Confidence            665

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=4.9e-14  Score=139.31  Aligned_cols=256  Identities=14%  Similarity=0.109  Sum_probs=142.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      ++|+|+|||+|||+||+.|++     +|++|+|+|+++++||.+.+.+. +|...|+|-|+|.+.+.++..++++++...
T Consensus         1 ~rVai~GaG~AgL~~a~~La~-----~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~   75 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELAD-----AGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIED   75 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHh-----CCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchh
Confidence            579999999999999999999     99999999999999999999875 578899999999999999889999988764


Q ss_pred             CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhH-HHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV-SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ........ . ...-.+       +.+|....+..... ..+.....+.+.+.       ..  ...+.......    .
T Consensus        76 ~~~~~~~~-~-~~~~~~-------~~~g~~~~~~~~~~p~p~~~~~~~l~~~~-------~~--~~~~~~~~~~l----~  133 (485)
T COG3349          76 RLQLREHT-K-TFVGSG-------TRPGAIGRFARPDAPQPTNGLKAFLRLPQ-------LP--RREKIRFVLRL----G  133 (485)
T ss_pred             eeehHhhh-h-hhcccC-------CCCCcccccccCCCCCcchhhhhhhhccc-------cC--HHHHhHHhhcc----c
Confidence            43321110 0 000000       00111000000000 00111111111110       00  00011111110    0


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHH-HHHHhhcCCCCCcch-----HHHHHhhhcCCCC-ceEe
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVT-IITRINYGQSLSISG-----LAGAVSLAGSGGG-LWAV  252 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-----~~~~~~~~~~~~g-~~~~  252 (487)
                      .... .   ....+.++++.++.+||++.+.+.....+.+. ......|..+-.+|+     ++.++.+.....+ .+.+
T Consensus       134 ~~~~-g---~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~  209 (485)
T COG3349         134 DAPI-G---ADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNL  209 (485)
T ss_pred             cccc-h---hHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhh
Confidence            0000 0   01123467889999999998876554444443 333445665545554     2223333321222 4455


Q ss_pred             ecchHHH-HHH---HHHhcCCeEEeCCceEEEEEeC---C--EEEEEEccCce---EecCEEEEccCCC
Q 043512          253 EGGNWQM-AAG---LINRSDVALHLHEEIESISYLR---E--YYELNSTKGNS---YTCQITVVATPLD  309 (487)
Q Consensus       253 ~gG~~~l-~~~---l~~~~G~~i~~~~~V~~I~~~~---~--~v~V~~~~G~~---~~ad~VV~a~~~~  309 (487)
                      +|++... ...   .+.+.|.+++.+.+|+.|..+.   .  .+++... +..   ..++.++.+.+..
T Consensus       210 ~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~  277 (485)
T COG3349         210 RGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQ  277 (485)
T ss_pred             cCCCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeec-CcceEeeehhhhhcccccc
Confidence            6665542 222   3445699999999999998764   2  2355443 433   3445555554443

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.52  E-value=6e-13  Score=130.88  Aligned_cols=235  Identities=15%  Similarity=0.226  Sum_probs=134.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeE-ecccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQT-FEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~-~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      +||+|||||++|+++|+.|++     .|.+|+|+|+++.+||.+.+....|.. .+.|+++++..+..+.+++..+.-. 
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~-----~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~-   75 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ-----LNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFEL-   75 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-----CCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccc-
Confidence            699999999999999999999     999999999999999999987766654 4899999998887666766665311 


Q ss_pred             CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchh-hhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFV-QKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ... .  . ....+.+|+.+.+.         +. ..+..+.+..        .......++.       ..... ....
T Consensus        76 ~~~-~--~-~~~~~~~g~~~~~P---------~~~~~i~~l~~~~--------~~~~~~~~l~-------~~~~~-~~~~  126 (377)
T TIGR00031        76 NNY-Q--H-RVLALYNNLDLTLP---------FNFNQFRKLLGVK--------DAQELQNFFN-------AQFKY-GDHV  126 (377)
T ss_pred             cce-e--E-EEEEEECCeEEccC---------CCHHHHHHhcccc--------hHHHHHHHHH-------HHhhc-ccCC
Confidence            111 1  0 11344566544442         10 0011111000        0011111111       11000 0000


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH-HHHHhh----hc-CCC--Cce
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL-AGAVSL----AG-SGG--GLW  250 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~----~~-~~~--g~~  250 (487)
                      +..+..++..              +... .+.+.+.+.++..++...+|.++ ++++- .+-+..    .+ +..  -..
T Consensus       127 ~~~~~~e~~d--------------~~~~-~~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~  191 (377)
T TIGR00031       127 PLEELQEIAD--------------PDIQ-LLYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQG  191 (377)
T ss_pred             CCCCHHHHHH--------------HHHH-HHHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccc
Confidence            1122222210              0011 12233344455566666677665 45542 221111    11 111  145


Q ss_pred             EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          251 AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       251 ~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +|++|..+++++|++.-+.+|++|+.+..+..+++++.+  .++ .+. +.||.+.|+..
T Consensus       192 ~P~~Gyt~~~~~ml~~~~i~v~l~~~~~~~~~~~~~~~~--~~~-~~~-~~vi~Tg~id~  247 (377)
T TIGR00031       192 LPKGGYTKLFEKMLDHPLIDVKLNCHINLLKDKDSQLHF--ANK-AIR-KPVIYTGLIDQ  247 (377)
T ss_pred             cccccHHHHHHHHHhcCCCEEEeCCccceeeccccceee--ccc-ccc-CcEEEecCchH
Confidence            899999999999998888999999988888765444433  233 333 88999988864

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.49  E-value=3.2e-13  Score=129.00  Aligned_cols=61  Identities=15%  Similarity=0.263  Sum_probs=54.0

Q ss_pred             CCceEee-cchHHHHHHHHHh---cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccC
Q 043512          247 GGLWAVE-GGNWQMAAGLINR---SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       247 ~g~~~~~-gG~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~  307 (487)
                      .|..+|. .....|++.|+.+   .||+|+++++|.+|..++.+..|.+++|+++.||.+|+|++
T Consensus       100 ~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG  164 (408)
T COG2081         100 LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG  164 (408)
T ss_pred             CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecC
Confidence            4655666 7788999999775   59999999999999999988999999998999999999999

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.48  E-value=6.5e-13  Score=126.78  Aligned_cols=250  Identities=20%  Similarity=0.255  Sum_probs=144.5

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCccceeEE-EeeCCeEecccceeEecCCh---hHH
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVVGGRMAT-VTISGQTFEAGASILHPKNY---HTV   90 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~GGr~~s-~~~~g~~~d~G~~~~~~~~~---~~~   90 (487)
                      ..-+.++|+|+|||++||++||+|++     .+.  .|+|+|+.+|+||.++| ...+|+.||.|+..+.+..+   .+.
T Consensus         7 ~~~~~~~vaVvGGGiSGL~aay~L~r-----~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l   81 (491)
T KOG1276|consen    7 EAVSGMTVAVVGGGISGLCAAYYLAR-----LGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETL   81 (491)
T ss_pred             cceecceEEEECCchhHHHHHHHHHh-----cCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHH
Confidence            34467899999999999999999999     554  45669999999999999 44568999999998887655   466


Q ss_pred             HHHHHcCCCCCCCCCC-CC---CceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHH
Q 043512           91 NFTKLLNLKPKDPPSS-ED---STAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVD  166 (487)
Q Consensus        91 ~~~~~lgl~~~~~~~~-~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (487)
                      +++..+|++.+...-. ..   ..++.++.|.-....+...+... +                      -++.+.+-...
T Consensus        82 ~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~-~----------------------~l~p~~k~L~~  138 (491)
T KOG1276|consen   82 DLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLK-F----------------------SLQPFGKPLLE  138 (491)
T ss_pred             HHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccc-c----------------------ccCcccchhHH
Confidence            8999999975443211 11   11222333322221110000000 0                      00000000000


Q ss_pred             HHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch--HHHHHhhh
Q 043512          167 KFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG--LAGAVSLA  243 (487)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~~~  243 (487)
                      .|.               .++.+...-....+.++.+|.+++- .++..+.+..++.+..|+.+. +++.  .+..++..
T Consensus       139 a~l---------------~e~fr~~~~~~~~dESV~sF~~Rrf-G~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~  202 (491)
T KOG1276|consen  139 AFL---------------RELFRKKVSDPSADESVESFARRRF-GKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKV  202 (491)
T ss_pred             HHH---------------hhhccccCCCCCccccHHHHHHHhh-hHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHH
Confidence            000               0111111112234566666665543 366667777888888887665 3432  33333321


Q ss_pred             c---------------------------------CCCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeC-CE
Q 043512          244 G---------------------------------SGGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLR-EY  286 (487)
Q Consensus       244 ~---------------------------------~~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~-~~  286 (487)
                      +                                 ..+..|..+||...+++++-+.+   ++.|.+.-++..+.... ++
T Consensus       203 Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~  282 (491)
T KOG1276|consen  203 EQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN  282 (491)
T ss_pred             HHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence            1                                 12346778999999999998765   46667777888777643 44


Q ss_pred             E--EEEEccCc-eEecCEEEEccCCCC
Q 043512          287 Y--ELNSTKGN-SYTCQITVVATPLDE  310 (487)
Q Consensus       287 v--~V~~~~G~-~~~ad~VV~a~~~~~  310 (487)
                      +  +++..++. ....++++.+.|...
T Consensus       283 ~~~tl~~~~~~~~~~~~~~~~t~~~~k  309 (491)
T KOG1276|consen  283 WSLTLVDHSGTQRVVVSYDAATLPAVK  309 (491)
T ss_pred             ceeEeEcCCCceeeeccccccccchHH
Confidence            5  44445552 234455555666554

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.40  E-value=3.5e-12  Score=127.17  Aligned_cols=63  Identities=17%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             CCceEeec-chHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCC
Q 043512          247 GGLWAVEG-GNWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       247 ~g~~~~~g-G~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      .|..||.. -...+++.|.+   +.|++|+++++|++|+.++++ +.|++++++.+.||.||+|++-.
T Consensus        98 ~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~  165 (409)
T PF03486_consen   98 DGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGK  165 (409)
T ss_dssp             TTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----S
T ss_pred             CCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCC
Confidence            35555554 35667777755   569999999999999998887 69999677799999999998854

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.36  E-value=2.7e-12  Score=127.44  Aligned_cols=64  Identities=20%  Similarity=0.274  Sum_probs=51.5

Q ss_pred             CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      +.+.+.+|   ..++.++|.+   +.|++|+.+++|++|..+++++. |+|.+|+ +.||.||+|++++...
T Consensus       135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~  205 (358)
T PF01266_consen  135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ  205 (358)
T ss_dssp             EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred             hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence            56677777   6778887765   45999999999999999999985 9999996 9999999999998643

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.35  E-value=2.3e-11  Score=123.49  Aligned_cols=64  Identities=17%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccC-----ceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKG-----NSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-----~~~~ad~VV~a~~~~~~  311 (487)
                      +.|.+.+|.   ..+...|++   +.|++|+.+++|++|..+++++.+.+.++     .+++||.||+|++.+..
T Consensus       185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            455555432   345555544   45999999999999998888776654332     36899999999999864

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.35  E-value=9.5e-11  Score=108.85  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEe---CCEEEEEEccCceEecCEEEEccCCCCCCeeecCC---CCCCCcCeEEEEEE
Q 043512          259 MAAGLINRSDVALHLHEEIESISYL---REYYELNSTKGNSYTCQITVVATPLDELNLHFSPP---ISIPERKLQHTHAT  332 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~---~~~~~~~~~~~~~~  332 (487)
                      ..+-.++.+|+.++.+..|+.+...   +..+.|+|.+|..+.|+.+|+|++.|.+.  |+|+   ...+....+.+...
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k--lL~~~~~~~~Pv~~i~ltvcy  235 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK--LLPTSLAIGFPVAPIQLTVCY  235 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh--hcCcccccCCccceeEeehhh
Confidence            3344566789999999999999853   34579999999889999999999999754  2332   23455555554444


Q ss_pred             EeeCCcCcccccCCCC
Q 043512          333 FVRGALNPAYFGLDGV  348 (487)
Q Consensus       333 ~~~~~l~~~y~g~~~~  348 (487)
                      |....-++.|+..+..
T Consensus       236 wk~~~~~~~~l~~d~~  251 (399)
T KOG2820|consen  236 WKTKKNMPVYLFDDDC  251 (399)
T ss_pred             heeecCCceeecCCCC
Confidence            4333334455555544

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.32  E-value=2.1e-11  Score=120.42  Aligned_cols=66  Identities=23%  Similarity=0.346  Sum_probs=51.0

Q ss_pred             CceEeecc---hHHHHHHHHHh---cCCeEEeCCceEEEEEeCCE-EEEEEccCce-EecCEEEEccCCCCCCe
Q 043512          248 GLWAVEGG---NWQMAAGLINR---SDVALHLHEEIESISYLREY-YELNSTKGNS-YTCQITVVATPLDELNL  313 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~-~~ad~VV~a~~~~~~~~  313 (487)
                      +.|.+.+|   ...+..+|++.   .|++|++|++|+.|++++++ ..+.|.+|+. ++|+.||.|++.....+
T Consensus       141 al~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~l  214 (429)
T COG0579         141 ALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPL  214 (429)
T ss_pred             eEEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHH
Confidence            34555554   35666677653   49999999999999998884 5777888866 99999999999987543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.32  E-value=2e-11  Score=123.02  Aligned_cols=63  Identities=13%  Similarity=0.196  Sum_probs=50.0

Q ss_pred             CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.|.+.+|   ...+.++|.+   +.|++|+++++|++|..+++++.|.+.+| ++.||.||+|++.+..
T Consensus       137 al~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~  205 (393)
T PRK11728        137 AIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSD  205 (393)
T ss_pred             eEEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchH
Confidence            44555554   3567777764   45999999999999998888888888777 7999999999999863

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.31  E-value=2.1e-11  Score=125.26  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |.|.+.+|.   .+++++|++   +.|++|+.+++|++|+. ++.+.|+|.+| ++.||+||+|++.+..
T Consensus       171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~  238 (460)
T TIGR03329       171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA  238 (460)
T ss_pred             EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence            456665553   456677754   46999999999999985 45567888888 7999999999998754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.29  E-value=8.7e-11  Score=118.00  Aligned_cols=54  Identities=17%  Similarity=0.107  Sum_probs=43.8

Q ss_pred             HHHHHHH---HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGL---INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l---~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+.+.|   +++.|++++.+++|++|..+++++.|++.+| ++.+|.||+|++.+..
T Consensus       145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~  201 (380)
T TIGR01377       145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS  201 (380)
T ss_pred             HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH
Confidence            3444444   3456999999999999998888888888777 7999999999998854

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.27  E-value=1.1e-10  Score=107.82  Aligned_cols=229  Identities=13%  Similarity=0.211  Sum_probs=131.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--Ce-EecccceeEecCChhHHHHHHHcC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQ-TFEAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~-~~d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      +.|++|||||++|+..|..|++     .|++|+|+||++.+||.|.+...+  |. ..--|+|+||..+..+++++..+-
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~-----~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~   75 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQ-----LGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT   75 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHH-----cCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence            3699999999999999999999     999999999999999999987653  54 356799999999998888888765


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      -...-..     ..+.+.+|..+.+.-           .    .+....+|--..++...+.+++....       .. .
T Consensus        76 e~~~Y~h-----rVla~~ng~~~~lP~-----------n----l~ti~ql~G~~~~p~~a~~~i~~~~~-------~~-~  127 (374)
T COG0562          76 EFNPYQH-----RVLALVNGQLYPLPF-----------N----LNTINQLFGKNFTPDEARKFIEEQAA-------EI-D  127 (374)
T ss_pred             hhhhhcc-----ceeEEECCeeeeccc-----------c----HHHHHHHhCccCCHHHHHHHHHHhhc-------cc-c
Confidence            3222111     125556776655521           1    11111111111122222222221100       00 0


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch-HHHHHhhh----c-CCCCce
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG-LAGAVSLA----G-SGGGLW  250 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~~~~----~-~~~g~~  250 (487)
                      .....+.++..         -.-++         +.+...+...++...||.++ ++++ +-.-+...    . +-...|
T Consensus       128 ~~~~q~~ee~a---------is~vg---------~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~y  189 (374)
T COG0562         128 IAEPQNLEEQA---------ISLVG---------RDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTY  189 (374)
T ss_pred             ccchhhhhhHH---------HHHHH---------HHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCccc
Confidence            00011111110         00111         22223344455555566555 4554 22222110    0 111122


Q ss_pred             --EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          251 --AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       251 --~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                        .|++|+-++++.|++.-..+|++||.-..|....        ++  +.+..||-+.|+..
T Consensus       190 QGlP~~GYT~~~~kMl~hp~I~V~Lntd~~~~~~~~--------~~--~~~~~VvytG~iD~  241 (374)
T COG0562         190 QGLPKDGYTAMFEKMLDHPNIDVRLNTDFFDVKDQL--------RA--IPFAPVVYTGPIDA  241 (374)
T ss_pred             ccCccccHHHHHHHHhcCCCceEEecCcHHHHhhhh--------cc--cCCCceEEecchHh
Confidence              5899999999999998788999999866654321        11  45668888888764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.22  E-value=2.6e-10  Score=122.35  Aligned_cols=66  Identities=18%  Similarity=0.379  Sum_probs=52.8

Q ss_pred             CCceEeecch---HHHHHHHHHhc--CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          247 GGLWAVEGGN---WQMAAGLINRS--DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       247 ~g~~~~~gG~---~~l~~~l~~~~--G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      .+.|++.+|.   ..++++|++..  |++|+.+++|++|..+++++.|.+++|..+.||.||+|++.+...
T Consensus       395 ~g~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~  465 (662)
T PRK01747        395 GGIFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAAR  465 (662)
T ss_pred             CcEEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCccc
Confidence            3566666663   46777776533  799999999999998888888988888778899999999998753

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.21  E-value=3.3e-10  Score=115.25  Aligned_cols=63  Identities=14%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.|.+.+|   ...++.+|++   +.|++|+++++|++|+.+++++ .|++.++ ++.||.||+|++.+..
T Consensus       189 a~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~-~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        189 GLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSYST  258 (416)
T ss_pred             EEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc-EEeCCEEEECCCcchH
Confidence            45555544   3456666654   4599999999999999887776 5777666 7999999999999864

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.21  E-value=3.1e-10  Score=99.40  Aligned_cols=42  Identities=31%  Similarity=0.482  Sum_probs=38.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...||+|||||++||+|||+|++     +|.+|+|+||+-.+||-++
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk-----~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK-----AGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh-----CCceEEEEEeecccCCccc
Confidence            35799999999999999999999     9999999999999988554

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=99.21  E-value=1.2e-09  Score=108.80  Aligned_cols=247  Identities=18%  Similarity=0.182  Sum_probs=131.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee---------------------CCeEecc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI---------------------SGQTFEA   77 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~---------------------~g~~~d~   77 (487)
                      +..+||||+|.|+.-.-.|..|++     .|++|+.+|+++..||..+++..                     ..+.+|+
T Consensus         2 ~~~yDviI~GTGl~esila~als~-----~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL   76 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSR-----SGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDL   76 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHH-----TT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EES
T ss_pred             CccceEEEECCCcHHHHHHHHHHh-----cCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEec
Confidence            567999999999999999999999     99999999999999999999873                     1356788


Q ss_pred             cceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcc-hhhhhHHHHHHHHHHHHhcCChHH
Q 043512           78 GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP-FVQKIVSLANSVLMVLRYGLSLLR  156 (487)
Q Consensus        78 G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  156 (487)
                      -|.++......+ +++-.-++.......... ..+.+.+|+-....    .+..+ |......+..+           .+
T Consensus        77 ~PKll~a~g~LV-~lLi~S~V~rYLEFk~V~-~~~v~~~~~l~kVP----~sr~dvf~s~~lsl~eK-----------R~  139 (438)
T PF00996_consen   77 IPKLLYARGPLV-KLLISSGVTRYLEFKAVD-GSYVYKNGKLHKVP----CSREDVFKSKLLSLFEK-----------RR  139 (438)
T ss_dssp             S--BEETTSHHH-HHHHHCTGGGGSEEEEES-EEEEEETTEEEE------SSHHHHHC-TTS-HHHH-----------HH
T ss_pred             chHhhhccCHHH-HHHHhCCcccceEEEEcc-eeEEEeCCEEeeCC----CCHHHhhcCCCccHHHH-----------HH
Confidence            888777666433 555555554432221100 01223333222221    11111 22222222221           12


Q ss_pred             HhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC--Ccc
Q 043512          157 MESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SIS  234 (487)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~  234 (487)
                      +.+        |......+....    ...    ..-.+....++.+++++.++.+..++.+..++.-  +..+.  +.|
T Consensus       140 lmk--------Fl~~v~~~~~~~----~~~----~~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL--~~~~~~~~~p  201 (438)
T PF00996_consen  140 LMK--------FLKFVANYEEDD----PST----HKGLDPEKKTFQELLKKFGLSENLIDFIGHAIAL--SLDDSYLTEP  201 (438)
T ss_dssp             HHH--------HHHHHHHGCTTB----GGG----STTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS---SSSSGGGGSB
T ss_pred             HHH--------HHHHHhhcccCC----cch----hhccccccccHHHHHHhcCCCHHHHHHHHHhhhh--ccCccccccc
Confidence            222        332222221111    000    0112334688999999999988776544322221  22221  123


Q ss_pred             hHHHH---H----hhhcCCCC-ceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeC-CEE-EEEEccCceEecCE
Q 043512          235 GLAGA---V----SLAGSGGG-LWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLR-EYY-ELNSTKGNSYTCQI  301 (487)
Q Consensus       235 ~~~~~---~----~~~~~~~g-~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~-~~v-~V~~~~G~~~~ad~  301 (487)
                      +..++   -    ++..++.+ ..+|.-|.++|++++.+.+   |+.+.+|++|.+|..++ +++ +|.. +|+++.|+.
T Consensus       202 ~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~~k~  280 (438)
T PF00996_consen  202 AREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVKAKK  280 (438)
T ss_dssp             SHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEEESE
T ss_pred             HHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEEcCE
Confidence            33222   1    12223334 4489999999999998853   99999999999999854 454 6665 888999999


Q ss_pred             EEEcc
Q 043512          302 TVVAT  306 (487)
Q Consensus       302 VV~a~  306 (487)
                      ||+..
T Consensus       281 vI~dp  285 (438)
T PF00996_consen  281 VIGDP  285 (438)
T ss_dssp             EEEEG
T ss_pred             EEECC
Confidence            99653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.20  E-value=3.7e-10  Score=115.59  Aligned_cols=54  Identities=17%  Similarity=0.381  Sum_probs=43.4

Q ss_pred             HHHHHHHHH---h----cC--CeEEeCCceEEEEEe-CCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---R----SD--VALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~----~G--~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+++++++   +    .|  ++|+++++|++|..+ ++.+.|+|.+| ++.||.||+|++.|..
T Consensus       211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHH
Confidence            456666643   4    56  679999999999987 44578889888 7999999999999874

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.20  E-value=2.4e-10  Score=114.58  Aligned_cols=54  Identities=13%  Similarity=0.156  Sum_probs=44.2

Q ss_pred             HHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          258 QMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      .++.++++   +.|++++++++|++|..+++++.|++++| ++.+|.||+|++.+...
T Consensus       150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~  206 (376)
T PRK11259        150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKD  206 (376)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhh
Confidence            44444433   46999999999999999888888988888 79999999999998643

>PRK06847 hypothetical protein; Provisional

Probab=99.17  E-value=4.6e-10  Score=112.52  Aligned_cols=47  Identities=13%  Similarity=0.106  Sum_probs=41.7

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +..|++|+++++|++|+.+++++.|.+.+|+++.+|.||.|.+.+..
T Consensus       118 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~  164 (375)
T PRK06847        118 RAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSK  164 (375)
T ss_pred             HHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcc
Confidence            34589999999999999888888888889989999999999998764

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.17  E-value=6.1e-10  Score=113.26  Aligned_cols=41  Identities=32%  Similarity=0.342  Sum_probs=36.4

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ...+..+||+|||||++|+++|..|++     .|++|+|+||++..
T Consensus        13 ~~~~~~~dV~IvGaG~aGl~~A~~L~~-----~G~~v~v~E~~~~~   53 (415)
T PRK07364         13 STRSLTYDVAIVGGGIVGLTLAAALKD-----SGLRIALIEAQPAE   53 (415)
T ss_pred             CCCccccCEEEECcCHHHHHHHHHHhc-----CCCEEEEEecCCcc
Confidence            345557899999999999999999999     99999999998753

>PRK07588 hypothetical protein; Provisional

Probab=99.17  E-value=5.5e-10  Score=112.63  Aligned_cols=44  Identities=16%  Similarity=0.215  Sum_probs=40.2

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |++|+++++|++|+.+++++.|++++|+++++|.||.|.+.+..
T Consensus       116 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        116 QVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             CeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            68999999999999888889999999988999999999998864

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.15  E-value=1.5e-09  Score=109.48  Aligned_cols=46  Identities=13%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++++++++|++|..+++++.|++.+|+++.+|.||.|.+.+.
T Consensus       124 ~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        124 HAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence            3458999999999999988888888888888999999999999986

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.15  E-value=6.9e-10  Score=111.65  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=40.5

Q ss_pred             hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.| ++|+++++|++|..+++++.|++.+|+++.+|.||.|.+.+..
T Consensus       118 ~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~  164 (385)
T TIGR01988       118 EYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSK  164 (385)
T ss_pred             hCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCH
Confidence            445 8999999999999888888898889989999999999998753

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.14  E-value=3.5e-10  Score=115.34  Aligned_cols=44  Identities=18%  Similarity=0.241  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+||||||+|+++|+.|++..   .|.+|+|+||.+.+|-.++
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~---~~~~V~vlEr~~~~a~~sS   48 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELD---PDWNIEVVERLDSPAIESS   48 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCC---CCCeEEEEEcCCCcchhcC
Confidence            4579999999999999999999943   4899999999667765444

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.13  E-value=9.5e-10  Score=112.12  Aligned_cols=44  Identities=32%  Similarity=0.440  Sum_probs=39.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ....++|+|||||++||+||..|++     .|++|+||||++.+||...
T Consensus         7 ~~~~~~VaIIGAG~aGL~aA~~l~~-----~G~~v~vfE~~~~vGG~W~   50 (461)
T PLN02172          7 PINSQHVAVIGAGAAGLVAARELRR-----EGHTVVVFEREKQVGGLWV   50 (461)
T ss_pred             CCCCCCEEEECCcHHHHHHHHHHHh-----cCCeEEEEecCCCCcceee
Confidence            3446899999999999999999999     9999999999999988654

>PRK07236 hypothetical protein; Provisional

Probab=99.13  E-value=2.2e-09  Score=107.92  Aligned_cols=44  Identities=16%  Similarity=0.053  Sum_probs=39.5

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++|+++++|++|+.+++++.|++.+|++++||.||.|-+.+..
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST  155 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence            46799999999999888889899999999999999999998864

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.13  E-value=1.6e-09  Score=109.46  Aligned_cols=44  Identities=11%  Similarity=0.114  Sum_probs=39.4

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++++++++|+++..+++++.|++.+|+++.||.||.|.+.+..
T Consensus       124 ~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  167 (396)
T PRK08163        124 LVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSV  167 (396)
T ss_pred             CcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChH
Confidence            58999999999999888888888888988999999999999864

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.12  E-value=6.7e-10  Score=114.04  Aligned_cols=65  Identities=14%  Similarity=0.268  Sum_probs=47.6

Q ss_pred             CceEeecc---hHHHHHHHHHh---cCCeEEeCCceEEEEEeC-CEEEEEE---ccC--ceEecCEEEEccCCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLINR---SDVALHLHEEIESISYLR-EYYELNS---TKG--NSYTCQITVVATPLDELN  312 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~-~~v~V~~---~~G--~~~~ad~VV~a~~~~~~~  312 (487)
                      +.|.+.+|   ...+..+|++.   .|++|+++++|++|..++ +++.|++   .+|  .+++||+||+|++.+...
T Consensus       166 Al~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~  242 (483)
T TIGR01320       166 ANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP  242 (483)
T ss_pred             EEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence            45556555   36677777654   499999999999999865 4566543   334  368999999999998754

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK08013 oxidoreductase; Provisional

Probab=99.11  E-value=1.9e-09  Score=108.99  Aligned_cols=44  Identities=18%  Similarity=0.234  Sum_probs=40.0

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |++++++++|++|+.+++.+.|++.+|++++||.||-|-+.+..
T Consensus       126 ~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~  169 (400)
T PRK08013        126 DITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSW  169 (400)
T ss_pred             CcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcH
Confidence            78999999999999888888888889999999999999998864

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.10  E-value=1.3e-09  Score=111.96  Aligned_cols=45  Identities=29%  Similarity=0.381  Sum_probs=37.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...+||+||||||.|+++|++|++..   .|.+|+|+||.+.+|+..+
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~---~g~~V~VlEk~~~~a~~sS   47 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELE---PEWSITMFERLDGVALESS   47 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhC---CCCeEEEEEcCCchhhhcC
Confidence            34579999999999999999999843   4789999999877765544

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.10  E-value=9.2e-10  Score=109.92  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +||+|||||++|+++|++|++     +|++|+|+|++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~-----~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR-----RGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCC
Confidence            589999999999999999999     9999999999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.10  E-value=1.5e-09  Score=110.03  Aligned_cols=53  Identities=17%  Similarity=0.103  Sum_probs=40.9

Q ss_pred             HHHHHHHH---hcCCeEEeCCceEEEEEe-CCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          258 QMAAGLIN---RSDVALHLHEEIESISYL-REYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~-~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+..+|++   +.|++++.+++|++|..+ ++++ .|+|.+| ++.++.||+|++.+..
T Consensus       184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~  241 (407)
T TIGR01373       184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSS  241 (407)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhH
Confidence            44444433   469999999999999864 4554 6888888 7999999999998864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.09  E-value=3.4e-09  Score=106.52  Aligned_cols=44  Identities=16%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEc-cCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNST-KGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++++.+++|+.++.+++.+.|++. +|++++||.||-|-+.+..
T Consensus       119 ~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~  163 (387)
T COG0654         119 NVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSA  163 (387)
T ss_pred             CcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchH
Confidence            4899999999999999988888877 9999999999999998864

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.09  E-value=1e-09  Score=111.26  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=41.4

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.|++|+.+++|++|+.+++++.|++.+|++++||.||.|.+.+..
T Consensus       124 ~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~  169 (405)
T PRK05714        124 DSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA  169 (405)
T ss_pred             cCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence            4589999999999999888888888889988999999999999864

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.09  E-value=3.4e-09  Score=107.29  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ++.|++|+++++|++|..+++++.|++.+|+++.+|.||.|.+.+..
T Consensus       122 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~  168 (403)
T PRK07333        122 EALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK  168 (403)
T ss_pred             HhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence            34589999999999999888888888888889999999999998753

>PRK09126 hypothetical protein; Provisional

Probab=99.09  E-value=1.2e-09  Score=110.24  Aligned_cols=51  Identities=10%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             HHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       261 ~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+.+..|++|+++++|++++.+++.+.|++++|++++||.||.|.+.+..
T Consensus       118 ~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (392)
T PRK09126        118 EAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSA  168 (392)
T ss_pred             HHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCch
Confidence            344445689999999999999888888888888989999999999998753

>PRK06753 hypothetical protein; Provisional

Probab=99.09  E-value=2.2e-09  Score=107.59  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+|+++++|++|+.+++++.|++.+|+++.+|.||.|.+.+..
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~  153 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSK  153 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchH
Confidence            45799999999999888889999999989999999999998753

>PRK05868 hypothetical protein; Validated

Probab=99.08  E-value=3.3e-09  Score=105.93  Aligned_cols=45  Identities=9%  Similarity=0.115  Sum_probs=40.7

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .|++++++++|++|+.+++++.|++.+|++++||.||-|-+.+..
T Consensus       117 ~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~  161 (372)
T PRK05868        117 PSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSN  161 (372)
T ss_pred             CCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCch
Confidence            478999999999998888889999999999999999999998864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.07  E-value=3.2e-09  Score=106.95  Aligned_cols=42  Identities=31%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +++||+|||||+||++||+.|++     .|++|+|+||++.+|.+..
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~-----~G~~VlvlEk~~~~G~k~~   43 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK-----AGLDVLVLEKGSEPGAKPC   43 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH-----cCCeEEEEecCCCCCCCcc
Confidence            57899999999999999999999     9999999999999886554

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.07  E-value=2.3e-09  Score=109.05  Aligned_cols=54  Identities=6%  Similarity=-0.003  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+.+++|++|..+++++.+.+.+|+++.||.||.|.+.+.
T Consensus       111 D~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        111 DAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            333333455679999999999999887777643344666899999999998864

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.07  E-value=4.1e-09  Score=105.92  Aligned_cols=44  Identities=11%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .|++++++++|++|..+++++.|++.+|+++.||.||.|.+.+.
T Consensus       119 ~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       119 TNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             CCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            48999999999999988888888888888899999999999885

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.06  E-value=2.9e-09  Score=100.13  Aligned_cols=42  Identities=33%  Similarity=0.499  Sum_probs=38.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...+||+|||||++|++||+.|++     +|++|+|+|++..+||.+
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~-----~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAK-----AGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHh-----CCCeEEEEecCCCCCCcc
Confidence            346899999999999999999999     999999999998888743

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.06  E-value=4.7e-10  Score=102.16  Aligned_cols=52  Identities=13%  Similarity=0.199  Sum_probs=39.3

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.++++.+.+++++++|++|.++++++.|++.+++++.||.||+|++...
T Consensus        87 yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   87 YLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS  138 (203)
T ss_dssp             HHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred             HHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence            4455666778889999999999999988999999998899999999999643

...

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.04  E-value=2.7e-09  Score=111.62  Aligned_cols=56  Identities=9%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cC--ceEecCEEEEccCCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KG--NSYTCQITVVATPLDELN  312 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G--~~~~ad~VV~a~~~~~~~  312 (487)
                      ..++.++++   +.|++|+.+++|++|..+++++ +|++.   +|  ..+.||.||.|+++|...
T Consensus       149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~  213 (546)
T PRK11101        149 FRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH  213 (546)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence            345555544   4699999999999999887765 56542   23  379999999999999744

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.04  E-value=6.2e-09  Score=104.89  Aligned_cols=45  Identities=9%  Similarity=0.055  Sum_probs=38.9

Q ss_pred             hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.| ++++ +++|++|..+++++.|++.+|.++.||.||.|.+.+..
T Consensus       123 ~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~  168 (388)
T PRK07608        123 FQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW  168 (388)
T ss_pred             hCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch
Confidence            445 8888 99999998888888898888888999999999999753

>PRK06184 hypothetical protein; Provisional

Probab=99.04  E-value=3.4e-09  Score=110.31  Aligned_cols=48  Identities=6%  Similarity=-0.055  Sum_probs=39.9

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNS---TKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++|+++++|++|+.+++++.|++   .++++++||.||.|.+.+..
T Consensus       119 l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~  169 (502)
T PRK06184        119 LAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSF  169 (502)
T ss_pred             HHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchH
Confidence            3445899999999999998888877665   55678999999999999863

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.04  E-value=4.8e-09  Score=101.28  Aligned_cols=48  Identities=10%  Similarity=0.066  Sum_probs=38.8

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCEEEEEEc-cCceEecCEEEEccCCCC
Q 043512          263 LINRSDVALHLHEEIESISYLREYYELNST-KGNSYTCQITVVATPLDE  310 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G~~~~ad~VV~a~~~~~  310 (487)
                      .+++.|++++++++|+++..+++++.+... ++.+++||.||.|.+...
T Consensus       100 ~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032       100 RAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            344679999999999999988887766544 345899999999999874

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.02  E-value=1.1e-08  Score=103.15  Aligned_cols=44  Identities=14%  Similarity=0.250  Sum_probs=40.0

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |++++.+++|+++..+++++.|++.+|++++||.||.|.+.+..
T Consensus       127 gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (391)
T PRK08020        127 NVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQ  170 (391)
T ss_pred             CcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCch
Confidence            89999999999999888888888888889999999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.02  E-value=7.9e-09  Score=96.85  Aligned_cols=41  Identities=29%  Similarity=0.462  Sum_probs=37.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++||+||+.|++     .|.+|+|+||+..+||.+
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~-----~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK-----NGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCccc
Confidence            46899999999999999999999     999999999999888653

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.02  E-value=5.2e-09  Score=105.77  Aligned_cols=45  Identities=7%  Similarity=0.058  Sum_probs=37.2

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNS---TKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .|++|+++++|+++..+++++.|++   .+++++.+|.||-|-+.+..
T Consensus       121 ~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~  168 (400)
T PRK06475        121 PGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSM  168 (400)
T ss_pred             CCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHh
Confidence            4789999999999998878777665   33457999999999999864

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.01  E-value=5.4e-09  Score=105.54  Aligned_cols=46  Identities=15%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..|++++++++|++|..+++++.|++.+|..+.+|.||.|.+.+..
T Consensus       125 ~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  170 (395)
T PRK05732        125 APGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA  170 (395)
T ss_pred             CCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence            3478999999999999888888898888888999999999998853

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.01  E-value=6.8e-09  Score=104.59  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=38.6

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.++..+++++|+++..+++++.|++.+|++++||.||.|.+.+..
T Consensus       123 ~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~  168 (388)
T PRK07494        123 ELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSP  168 (388)
T ss_pred             cCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCch
Confidence            3443348899999999888889898888989999999999998753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.01  E-value=4.5e-09  Score=109.06  Aligned_cols=56  Identities=7%  Similarity=-0.027  Sum_probs=42.8

Q ss_pred             HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEcc---Cc--eEecCEEEEccCCCCCC
Q 043512          257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTK---GN--SYTCQITVVATPLDELN  312 (487)
Q Consensus       257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~a~~~~~~~  312 (487)
                      .+++..++   ++.|++++.+++|++|..+++.++|++.+   |+  ++.|+.||.|+++|...
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~  218 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ  218 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence            34444443   34699999999999999887777776653   43  68999999999998743

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.00  E-value=5.6e-09  Score=106.06  Aligned_cols=54  Identities=15%  Similarity=0.235  Sum_probs=44.3

Q ss_pred             HHHHHHHHhc-CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          258 QMAAGLINRS-DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       258 ~l~~~l~~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+.+.|.+.+ +..++++++|++|..+++++.|++.+|+++++|.||.|.+.+..
T Consensus       106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            4455555554 45789999999999888889998889989999999999998864

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02463 lycopene beta cyclase

Probab=99.00  E-value=1e-07  Score=96.74  Aligned_cols=44  Identities=11%  Similarity=0.168  Sum_probs=38.3

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.|++++ .++|++|..+++++.|++++|++++||.||.|.+...
T Consensus       126 ~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        126 ANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             hcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence            3588885 6799999988888899999998999999999999864

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.00  E-value=1.9e-08  Score=101.95  Aligned_cols=45  Identities=20%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .|++|+++++|++|..+++.+.|++.+|++++||.||.|.+.+..
T Consensus       125 ~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~  169 (405)
T PRK08850        125 DNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW  169 (405)
T ss_pred             CCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence            478999999999999888888899989999999999999998753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.99  E-value=9.6e-09  Score=106.00  Aligned_cols=41  Identities=24%  Similarity=0.285  Sum_probs=36.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC--ccce
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV--VGGR   64 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~--~GGr   64 (487)
                      +...||+|||||++|++||+.+++     .|.+|+|+||.+.  .||.
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~-----~G~~V~vlEk~~~~~~GG~   44 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAARE-----AGASVLLLEAAPREWRGGN   44 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCcCCCcc
Confidence            456899999999999999999999     9999999999874  5653

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.99  E-value=1.2e-08  Score=102.90  Aligned_cols=61  Identities=25%  Similarity=0.342  Sum_probs=45.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc--cceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV--GGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~--GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      ..||+|||||++||++|..|++     .|++|+|+|+++..  .+            +.++..+.+   ...++++++|+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~-----~G~~v~v~E~~~~~~~~~------------~~~a~~l~~---~~~~~l~~lGl   61 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL-----AGIDSVVLERRSREYVEG------------RIRAGVLEQ---GTVDLLREAGV   61 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh-----cCCCEEEEEcCCcccccc------------ccceeEECH---hHHHHHHHcCC
Confidence            5799999999999999999999     99999999998742  11            123333322   22378889997


Q ss_pred             CCC
Q 043512           99 KPK  101 (487)
Q Consensus        99 ~~~  101 (487)
                      ...
T Consensus        62 ~~~   64 (392)
T PRK08243         62 GER   64 (392)
T ss_pred             hHH
Confidence            543

>PRK06834 hypothetical protein; Provisional

Probab=98.99  E-value=7e-09  Score=107.02  Aligned_cols=48  Identities=13%  Similarity=0.100  Sum_probs=42.4

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++|+++++|++|..+++++.|++.+|++++||.||.|.+.+..
T Consensus       110 l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~  157 (488)
T PRK06834        110 VGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL  157 (488)
T ss_pred             HHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence            445689999999999999988888888888888999999999999864

>PRK07190 hypothetical protein; Provisional

Probab=98.98  E-value=5e-09  Score=108.03  Aligned_cols=47  Identities=9%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+.+++|++|..+++++.+.+.+|++++|+.||.|.+.+.
T Consensus       119 ~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        119 LKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            34569999999999999998888877777888999999999999875

>PRK07045 putative monooxygenase; Reviewed

Probab=98.98  E-value=8.6e-09  Score=103.80  Aligned_cols=46  Identities=17%  Similarity=0.166  Sum_probs=38.9

Q ss_pred             hcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..|++++++++|+.|+.++++  +.|++.+|+++.+|.||.|.+....
T Consensus       119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~  166 (388)
T PRK07045        119 LPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSM  166 (388)
T ss_pred             CCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChH
Confidence            347899999999999986554  3788888989999999999998863

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.97  E-value=4.3e-08  Score=102.64  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...+.++||||||+| +|++||..+++     .|.+|+|+||.+.+||.+.
T Consensus        11 ~~~d~e~DvvvvG~G-~G~~aA~~a~~-----~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         11 PVRDTTVDLLVVGSG-TGMAAALAAHE-----LGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             CCCCceeCEEEECCc-HHHHHHHHHHH-----CCCcEEEEecCCCCcCccc
Confidence            445668999999999 89999999999     9999999999999999665

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.96  E-value=1.9e-08  Score=101.04  Aligned_cols=46  Identities=11%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..|++++.+++|++++.+++++.|++.+|.++++|.||.|.+.+..
T Consensus       123 ~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~  168 (384)
T PRK08849        123 YPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQ  168 (384)
T ss_pred             CCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCch
Confidence            3478999999999999988888899999999999999999999864

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=98.96  E-value=2.9e-09  Score=107.05  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=59.9

Q ss_pred             CCCceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCC
Q 043512          246 GGGLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPP  318 (487)
Q Consensus       246 ~~g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~  318 (487)
                      ..++|.|..|.   ..++.+|+.   ++|+.|..+|+|++|....+++ +|.|.-| .+++.+||-|++.|.....-.+.
T Consensus       173 ~g~Ly~P~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~g  251 (856)
T KOG2844|consen  173 YGGLYSPGDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAG  251 (856)
T ss_pred             eeeeecCCCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcC
Confidence            35678887774   457777754   5799999999999999876664 8999888 79999999999999743322233


Q ss_pred             CCCCCcCeEE
Q 043512          319 ISIPERKLQH  328 (487)
Q Consensus       319 ~~~~~~~~~~  328 (487)
                      +..+..++++
T Consensus       252 vkvPL~p~~H  261 (856)
T KOG2844|consen  252 VKVPLVPMHH  261 (856)
T ss_pred             Ccccceeeee
Confidence            3344444443

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.95  E-value=3e-08  Score=104.08  Aligned_cols=45  Identities=11%  Similarity=0.186  Sum_probs=38.5

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~~~  311 (487)
                      .|++|+++++|++|+.+++++.|++.  +|  ++++||.||.|.+.+..
T Consensus       127 ~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~  175 (538)
T PRK06183        127 PHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSF  175 (538)
T ss_pred             CCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchh
Confidence            48999999999999998888877765  46  47999999999998864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.95  E-value=2.7e-08  Score=103.35  Aligned_cols=43  Identities=23%  Similarity=0.338  Sum_probs=38.9

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...++||||||||++|++||+.+++     .|.+|+|+||.+.+||..
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~-----~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKD-----AGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCcc
Confidence            3457899999999999999999999     999999999999888854

>PRK08244 hypothetical protein; Provisional

Probab=98.94  E-value=8.5e-09  Score=107.16  Aligned_cols=55  Identities=13%  Similarity=0.059  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEc--cC-ceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNST--KG-NSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G-~~~~ad~VV~a~~~~~~  311 (487)
                      .++....+++.|++|+++++|++|..+++++.|++.  +| ++++||.||.|.+.+..
T Consensus       103 e~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~  160 (493)
T PRK08244        103 EKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI  160 (493)
T ss_pred             HHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence            444444455679999999999999988888766543  45 47999999999998863

>PRK10015 oxidoreductase; Provisional

Probab=98.94  E-value=3e-08  Score=100.80  Aligned_cols=39  Identities=23%  Similarity=0.402  Sum_probs=35.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ..+||||||||++|++||+.|++     +|++|+|+||...+|-
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~-----~G~~VlliEr~~~~g~   42 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR-----AGLDVLVIERGDSAGC   42 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh-----CCCeEEEEecCCCCCc
Confidence            45899999999999999999999     9999999999887653

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.94  E-value=9.5e-09  Score=103.45  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             CceEeecch---HHHHHHHHH---hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGGN---WQMAAGLIN---RSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG~---~~l~~~l~~---~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+.+.+|.   ..++.++++   +.| ..+..+++|+.+..+++.+.|.|.+|+ +.||+||+|++.+..
T Consensus       144 a~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~  213 (387)
T COG0665         144 GLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAG  213 (387)
T ss_pred             eEecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence            344555543   456666655   457 567779999999875345689998885 999999999999864

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.94  E-value=2.4e-08  Score=99.98  Aligned_cols=43  Identities=7%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++++.+++|++|..+++++.|.+.++ +++||.||.|-+.+..
T Consensus       119 ~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~  161 (374)
T PRK06617        119 LITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSK  161 (374)
T ss_pred             CcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCch
Confidence            478999999999998888888888777 8999999999999864

>PRK07538 hypothetical protein; Provisional

Probab=98.93  E-value=2e-08  Score=101.97  Aligned_cols=35  Identities=37%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +||+|||||++||++|+.|++     +|++|+|+|+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~-----~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQ-----RGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----CCCcEEEEEcCCcc
Confidence            589999999999999999999     99999999998653

>TIGR00275 flavoprotein, HI0933 family

Probab=98.93  E-value=4.5e-09  Score=105.86  Aligned_cols=54  Identities=17%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+.+.|.+   +.|++|+++++|++|..+++.+.|++ +++++.+|.||+|++...
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence            3455555544   45999999999999988777778877 455899999999999753

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07121 hypothetical protein; Validated

Probab=98.93  E-value=6.6e-08  Score=100.37  Aligned_cols=43  Identities=30%  Similarity=0.441  Sum_probs=38.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ....||+|||||++|++||+.+++     .|.+|+|+||....||...
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae-----~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAA-----AGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCCccc
Confidence            356899999999999999999999     9999999999988888543

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.92  E-value=3.2e-08  Score=99.58  Aligned_cols=63  Identities=22%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLK   99 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~   99 (487)
                      +.+||+|||||++|+++|..|++     +|++|+|+||++...      .    .-+.|+..+..   +..++++.+|+.
T Consensus         1 ~~~dV~IVGaG~aGl~~A~~L~~-----~G~~v~viE~~~~~~------~----~~~~~a~~l~~---~~~~~L~~lGl~   62 (390)
T TIGR02360         1 MKTQVAIIGAGPSGLLLGQLLHK-----AGIDNVILERQSRDY------V----LGRIRAGVLEQ---GTVDLLREAGVD   62 (390)
T ss_pred             CCceEEEECccHHHHHHHHHHHH-----CCCCEEEEECCCCcc------c----CCceeEeeECH---HHHHHHHHCCCh
Confidence            35799999999999999999999     999999999987410      0    00234444322   233788888875


Q ss_pred             C
Q 043512          100 P  100 (487)
Q Consensus       100 ~  100 (487)
                      .
T Consensus        63 ~   63 (390)
T TIGR02360        63 E   63 (390)
T ss_pred             H
Confidence            4

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02661 Putative thiazole synthesis

Probab=98.91  E-value=3.8e-08  Score=94.91  Aligned_cols=42  Identities=26%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GGr~~   66 (487)
                      ...||+|||||++|++||+.|++     . |++|+|+||+..+||...
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~-----~~g~kV~viEk~~~~GGG~~  133 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSK-----NPNVKVAIIEQSVSPGGGAW  133 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHH-----cCCCeEEEEecCccccccee
Confidence            35799999999999999999997     5 899999999988887443

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.88  E-value=3.8e-08  Score=102.22  Aligned_cols=56  Identities=5%  Similarity=-0.059  Sum_probs=43.2

Q ss_pred             HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEccC----ceEecCEEEEccCCCCCC
Q 043512          257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTKG----NSYTCQITVVATPLDELN  312 (487)
Q Consensus       257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~a~~~~~~~  312 (487)
                      ..+...++   ++.|++++.+++|++|..+++.+.|++.++    .++.|+.||.|+++|...
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence            34444443   356999999999999998887777776554    358999999999999754

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.86  E-value=3.2e-07  Score=96.91  Aligned_cols=43  Identities=35%  Similarity=0.492  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ....||+|||||++|++||+.+++     +|.+|+|+||.+..||.+.
T Consensus         7 ~~~~DVvVVG~G~aGl~AA~~aa~-----~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          7 ELTCDVLVIGSGAGGLSAAITARK-----LGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-----cCCeEEEEecCCCCCCccc
Confidence            357899999999999999999999     9999999999998888765

>PRK06185 hypothetical protein; Provisional

Probab=98.85  E-value=7e-08  Score=97.89  Aligned_cols=36  Identities=22%  Similarity=0.450  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +.+||+|||||++|+++|+.|++     .|++|+|+|+++.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~-----~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLAR-----AGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCCc
Confidence            56899999999999999999999     9999999999753

>PRK06996 hypothetical protein; Provisional

Probab=98.82  E-value=1.7e-07  Score=94.74  Aligned_cols=45  Identities=11%  Similarity=-0.016  Sum_probs=37.8

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPL  308 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~  308 (487)
                      +++.|++++.+++|++|+.+++++.|+..+|   ++++||.||.|.+.
T Consensus       125 ~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        125 VRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCC
Confidence            3445899999999999988888888887654   58999999999885

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.82  E-value=2.1e-06  Score=85.84  Aligned_cols=42  Identities=14%  Similarity=0.126  Sum_probs=37.3

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.+++++.|++|..+++.+.|++.+|++++|+.||-|.++.
T Consensus       100 ~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~  141 (374)
T PF05834_consen  100 GGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPS  141 (374)
T ss_pred             CCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcc
Confidence            457789999999999888888899999999999999999854

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.82  E-value=1.4e-07  Score=99.27  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=37.2

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      |...+...||+|||||++||++|+.|++     .|++|+|+||++.+
T Consensus        17 ~~~~~~~~dVlIVGaGpaGl~lA~~L~~-----~G~~v~viE~~~~~   58 (547)
T PRK08132         17 DADDPARHPVVVVGAGPVGLALAIDLAQ-----QGVPVVLLDDDDTL   58 (547)
T ss_pred             cCCCCCcCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeCCCCC
Confidence            3445577899999999999999999999     99999999998754

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.82  E-value=2.9e-08  Score=100.84  Aligned_cols=47  Identities=30%  Similarity=0.390  Sum_probs=41.2

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCCccceeEEE
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGVVGGRMATV   68 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~~GGr~~s~   68 (487)
                      ...+..||+|||||++||++|+.|++     +|.. ++||||++.+||.-+..
T Consensus         4 ~~~~~~~v~IIGaG~sGlaaa~~L~~-----~g~~~~~i~Ek~~~~Gg~W~~~   51 (443)
T COG2072           4 GVATHTDVAIIGAGQSGLAAAYALKQ-----AGVPDFVIFEKRDDVGGTWRYN   51 (443)
T ss_pred             CcCCcccEEEECCCHHHHHHHHHHHH-----cCCCcEEEEEccCCcCCcchhc
Confidence            45567899999999999999999999     9988 99999999988865543

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.81  E-value=3.2e-08  Score=99.36  Aligned_cols=43  Identities=28%  Similarity=0.415  Sum_probs=38.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+.++|+|||||++||++|..|.+     .|++|+||||.+.+||--.
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~-----~g~~v~vfEr~~~iGGlW~   46 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLR-----EGHEVVVFERTDDIGGLWK   46 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHH-----CCCCceEEEecCCccceEe
Confidence            346899999999999999999999     9999999999999887544

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.81  E-value=8.9e-07  Score=93.56  Aligned_cols=46  Identities=30%  Similarity=0.344  Sum_probs=41.4

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ......+||+|||+|++|++||..+++     +|.+|+|+||++.+||.+.
T Consensus         7 ~~~~~~~dvvvvG~G~aG~~aa~~~~~-----~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134          7 YPPDLECDVLVIGSGAAGLSAAVTAAW-----HGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CCCCCccCEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCcccc
Confidence            446668999999999999999999999     9999999999988888664

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.80  E-value=4.7e-08  Score=94.66  Aligned_cols=45  Identities=16%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|+++++ ++|++|..+++.+.|.+.+|+++.+|+||+|++...
T Consensus        68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence            455788888 899999988888888888888999999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.79  E-value=1.7e-08  Score=100.14  Aligned_cols=49  Identities=12%  Similarity=0.095  Sum_probs=36.8

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCEEEEEEcc---C--ceEecCEEEEccCCCCC
Q 043512          263 LINRSDVALHLHEEIESISYLREYYELNSTK---G--NSYTCQITVVATPLDEL  311 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G--~~~~ad~VV~a~~~~~~  311 (487)
                      .+++.|++|+++++|+.+..+.+++.+.+.+   |  ++++||.||.|-+.+..
T Consensus       120 ~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~  173 (356)
T PF01494_consen  120 EAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSK  173 (356)
T ss_dssp             HHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-H
T ss_pred             hhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccc
Confidence            3445689999999999999988887554433   3  36899999999999863

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.78  E-value=6.8e-08  Score=98.30  Aligned_cols=56  Identities=9%  Similarity=0.079  Sum_probs=39.4

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cCc--eEecCEEEEccCCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~~~ad~VV~a~~~~~~  311 (487)
                      ...+.+.|.+   +.|++|+++++|+++..++++| +|...   +|+  ++.|+.||+|++-...
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4556666654   5699999999999999998886 55544   453  5789999999997654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.77  E-value=2.2e-07  Score=95.24  Aligned_cols=38  Identities=29%  Similarity=0.519  Sum_probs=35.6

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCcccee
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGGRM   65 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GGr~   65 (487)
                      ||+|||||++|++||+.+++     +| .+|+|+||.+..||.+
T Consensus         1 DVvVVG~G~AGl~AA~~aa~-----~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK-----AGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH-----cCCccEEEEecCCCCCCcc
Confidence            79999999999999999999     99 9999999998888754

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.77  E-value=1.2e-07  Score=96.40  Aligned_cols=38  Identities=29%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||+|.+||+||..+ +     .|.+|+|+||.+..||
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a-~-----~G~~V~lleK~~~~gg   40 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNL-R-----KDLKILMVSKGKLNEC   40 (433)
T ss_pred             ccccEEEECchHHHHHHHHHh-c-----cCCCEEEEecCCCCCC
Confidence            457999999999999999997 6     7899999999887655

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.76  E-value=2.8e-07  Score=97.76  Aligned_cols=40  Identities=23%  Similarity=0.327  Sum_probs=36.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...+||+|||||+.|+++|+.|++     +|++|+|+||++..+|
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~-----rGl~V~LvE~~d~a~G  108 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAAT-----RGLRVGLVEREDFSSG  108 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHh-----CCCEEEEEeccccCCC
Confidence            445899999999999999999999     9999999999975544

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.76  E-value=1.4e-07  Score=96.41  Aligned_cols=44  Identities=9%  Similarity=0.141  Sum_probs=37.8

Q ss_pred             CCeEEeCCceEEEEEe-------CCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYL-------REYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~-------~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++++++++|++|+.+       +++++|++.+|++++||.||.|-+.+..
T Consensus       134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~  184 (437)
T TIGR01989       134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN  184 (437)
T ss_pred             CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence            4899999999999752       3568888899999999999999999864

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.75  E-value=2.3e-07  Score=98.71  Aligned_cols=39  Identities=21%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||..+++     .|.+|+|+||...+|+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae-----~G~~VilieK~~~~~~   72 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE-----LGYNVKVFCYQDSPRR   72 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-----cCCcEEEEecCCCCCc
Confidence            35799999999999999999999     9999999999776653

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.75  E-value=7e-08  Score=101.38  Aligned_cols=55  Identities=9%  Similarity=0.035  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcCC-eEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLINRSDV-ALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~~~G~-~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+.+.|++.++. .++++++|++|+.+++++.|++.+|+++.+|.||.|.+.+..
T Consensus       194 ~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~  249 (668)
T PLN02927        194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSK  249 (668)
T ss_pred             HHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcH
Confidence            3455566666654 467899999999988999999999989999999999999864

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.74  E-value=6.2e-07  Score=93.40  Aligned_cols=44  Identities=25%  Similarity=0.351  Sum_probs=39.2

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...+.+.||+||||| +||+||+.+++     .|.+|+|+||.+..||.+
T Consensus         2 ~~~d~~~DVvVVG~G-aGl~aA~~aa~-----~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          2 SAWDEEVDVLVAGSG-GGVAGAYTAAR-----EGLSVALVEATDKFGGTT   45 (513)
T ss_pred             CCCCCccCEEEECch-HHHHHHHHHHH-----CCCcEEEEecCCCCCcce
Confidence            345668899999999 99999999999     999999999998878754

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.73  E-value=1.3e-07  Score=95.09  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +||+|||||++|++||+.|++     .|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~-----~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR-----AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----CCCcEEEEECC
Confidence            599999999999999999999     99999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.72  E-value=1.1e-07  Score=98.16  Aligned_cols=39  Identities=23%  Similarity=0.412  Sum_probs=35.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC-CCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~-~~~GG   63 (487)
                      ..+||||||||+||+.||+.+++     .|.+|+|+|++ +.+|+
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR-----~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR-----MGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH-----cCCcEEEEecccccccc
Confidence            46899999999999999999999     99999999997 46765

>PLN02697 lycopene epsilon cyclase

Probab=98.72  E-value=1.9e-07  Score=96.30  Aligned_cols=45  Identities=18%  Similarity=0.314  Sum_probs=36.7

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.|+++ ++++|++|..+++++. +.+.+|.++.|+.||.|.+.+..
T Consensus       204 ~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~  249 (529)
T PLN02697        204 ESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG  249 (529)
T ss_pred             hcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence            358887 7889999988777764 45677888999999999999873

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.71  E-value=6.4e-07  Score=94.58  Aligned_cols=52  Identities=33%  Similarity=0.454  Sum_probs=43.8

Q ss_pred             EEeC--CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           10 LIFS--PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        10 ~~~~--~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ++++  .+...+.++||+|||+|.+|++||..+++     +|.+|+|+||.+.+||.+.
T Consensus         3 ~~~~~~~~~~~~~~~dvvvvG~G~aG~~aa~~~~~-----~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843          3 PVVSELSPERWDAEFDVIVIGAGAAGMSAALFAAI-----AGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             cccccCCCCCCCCCCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCccc
Confidence            4454  23445567899999999999999999999     9999999999998888665

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.71  E-value=8.5e-09  Score=91.15  Aligned_cols=42  Identities=31%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++||+||++|++     .|++|+|+|++..+||.++
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~-----~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAK-----AGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHH-----HTS-EEEEESSSS-BTTTT
T ss_pred             ccCCEEEECCChhHHHHHHHHHH-----CCCeEEEEecCCCCCcccc
Confidence            35799999999999999999999     9999999999999998654

>PRK11445 putative oxidoreductase; Provisional

Probab=98.69  E-value=2.4e-07  Score=91.88  Aligned_cols=45  Identities=16%  Similarity=0.078  Sum_probs=37.8

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEE-ccCc--eEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNS-TKGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VV~a~~~~~~  311 (487)
                      .|+++++++.|++|..+++++.|++ .+|+  +++||.||.|.+....
T Consensus       111 ~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~  158 (351)
T PRK11445        111 ASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSM  158 (351)
T ss_pred             cCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            5789999999999998888887775 5664  6899999999998753

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.69  E-value=5.2e-06  Score=77.76  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...||+|||||..|+|+|++|.++.-+ .|.+|+|+|+.+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd-~gl~VvVVErddt  124 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARD-EGLNVVVVERDDT  124 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhc-CCceEEEEeccCc
Confidence            368999999999999999999985432 6799999999875

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.69  E-value=2.3e-06  Score=85.29  Aligned_cols=36  Identities=31%  Similarity=0.517  Sum_probs=33.3

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccc
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGG   63 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GG   63 (487)
                      ||+|||||++|+++|+.|++     .  |++|+|+|+.+.+||
T Consensus         1 DviIvGaG~AGl~lA~~L~~-----~~~g~~V~lle~~~~~~~   38 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQR-----ARPDFRIRVIEAGRTIGG   38 (370)
T ss_pred             CEEEECccHHHHHHHHHHHh-----cCCCCeEEEEeCCCCCCC
Confidence            79999999999999999998     6  999999999887665

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PLN02985 squalene monooxygenase

Probab=98.69  E-value=1e-06  Score=91.44  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...+..+||+|||||++|+++|+.|++     +|++|+|+||...
T Consensus        38 ~~~~~~~DViIVGAG~aGlalA~aLa~-----~G~~V~vlEr~~~   77 (514)
T PLN02985         38 ERKDGATDVIIVGAGVGGSALAYALAK-----DGRRVHVIERDLR   77 (514)
T ss_pred             cCcCCCceEEEECCCHHHHHHHHHHHH-----cCCeEEEEECcCC
Confidence            345667899999999999999999999     9999999999753

>PRK06126 hypothetical protein; Provisional

Probab=98.69  E-value=9e-08  Score=100.80  Aligned_cols=45  Identities=9%  Similarity=0.042  Sum_probs=36.6

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEE---ccCc--eEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNS---TKGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~--~~~ad~VV~a~~~~~~  311 (487)
                      .|++|+++++|++|..+++++.+++   .+|+  ++.+|.||.|.+.+..
T Consensus       140 ~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        140 PGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             CCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchH
Confidence            4789999999999998888776554   2353  6899999999998863

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=4e-07  Score=95.79  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=35.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae-----~G~~V~lveK~~~~~g   42 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS-----AGFKVAVISKVFPTRS   42 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH-----CCCcEEEEEccCCCCC
Confidence            45799999999999999999999     9999999999876555

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.68  E-value=6.1e-07  Score=94.95  Aligned_cols=45  Identities=9%  Similarity=0.043  Sum_probs=37.9

Q ss_pred             CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           14 PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        14 ~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ++.......||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus         5 ~~~~~~~~~DVvVIG~G~AGl~AAl~Aa~-----~G~~V~lveK~~~~~g   49 (598)
T PRK09078          5 AYKIIDHKYDVVVVGAGGAGLRATLGMAE-----AGLKTACITKVFPTRS   49 (598)
T ss_pred             cccccccccCEEEECccHHHHHHHHHHHH-----cCCcEEEEEccCCCCc
Confidence            34444457899999999999999999999     9999999999865544

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.67  E-value=6.1e-07  Score=94.82  Aligned_cols=37  Identities=16%  Similarity=0.147  Sum_probs=34.0

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ||+|||||++|++||..+++     .|.+|+|+||....||.
T Consensus         1 DVlVVG~G~AGl~AA~~aae-----~G~~V~lleK~~~~~g~   37 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK-----AGLNTAVISKVYPTRSH   37 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH-----CCCcEEEEeccCCCCCc
Confidence            79999999999999999999     99999999998766653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.67  E-value=1e-06  Score=92.52  Aligned_cols=42  Identities=29%  Similarity=0.370  Sum_probs=38.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +.++||+|||+|++|++||..+++     .|.+|+|+||....||.+
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~-----~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAAD-----SGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcee
Confidence            457899999999999999999999     999999999998888854

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.65  E-value=7.8e-07  Score=93.91  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=35.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||+|||+||..+++     .|.+|+|+||....||
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~-----~G~~V~lleK~~~~~g   44 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ-----SGQSCALLSKVFPTRS   44 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-----cCCcEEEEEccCCCCC
Confidence            46799999999999999999999     9999999999876555

>PRK09897 hypothetical protein; Provisional

Probab=98.65  E-value=5.1e-07  Score=93.24  Aligned_cols=41  Identities=20%  Similarity=0.093  Sum_probs=35.4

Q ss_pred             CeEEeCCceEEEEEeCCEEEEEEcc-CceEecCEEEEccCCC
Q 043512          269 VALHLHEEIESISYLREYYELNSTK-GNSYTCQITVVATPLD  309 (487)
Q Consensus       269 ~~i~~~~~V~~I~~~~~~v~V~~~~-G~~~~ad~VV~a~~~~  309 (487)
                      ++++.+++|++|..+++++.|++.+ |..+.||.||+|++-.
T Consensus       124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~  165 (534)
T PRK09897        124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV  165 (534)
T ss_pred             EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence            6888899999999988888888755 4679999999999963

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.65  E-value=2.4e-07  Score=93.29  Aligned_cols=44  Identities=7%  Similarity=0.015  Sum_probs=36.2

Q ss_pred             hcCCeEEeCCceEEEEEe-CCEEEEEEccCceEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.|++++ .++|+.+..+ ++.+.|++.+|++++||.||.|.+.+.
T Consensus        97 ~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        97 EGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             hcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            4478885 6789998877 556788888888899999999999875

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.65  E-value=1.1e-06  Score=92.04  Aligned_cols=42  Identities=24%  Similarity=0.460  Sum_probs=37.6

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ......||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus        12 ~~~~~~DVlVIG~G~AGl~AAi~aae-----~G~~VilleK~~~~~g   53 (541)
T PRK07804         12 GWRDAADVVVVGSGVAGLTAALAARR-----AGRRVLVVTKAALDDG   53 (541)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHH-----cCCeEEEEEccCCCCC
Confidence            34567899999999999999999999     9999999999887665

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.64  E-value=3e-07  Score=95.94  Aligned_cols=47  Identities=13%  Similarity=0.143  Sum_probs=40.3

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++++++++|++|..+++.+.|.+.+|+.+.||.||+|++...
T Consensus       276 ~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        276 VKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            34568899999999999987777888888888899999999999854

>PRK12839 hypothetical protein; Provisional

Probab=98.63  E-value=1.2e-06  Score=92.21  Aligned_cols=44  Identities=30%  Similarity=0.438  Sum_probs=40.1

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+...||+|||+|++|++||+.|++     .|.+|+|+||...+||.+.
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~-----~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAY-----GGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcccc
Confidence            4457899999999999999999999     9999999999988898764

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.62  E-value=1.3e-06  Score=92.78  Aligned_cols=42  Identities=12%  Similarity=0.056  Sum_probs=36.9

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ......||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus        25 ~~~~~~DVlVIG~G~AGl~AAi~Aa~-----~G~~V~lveK~~~~~g   66 (617)
T PTZ00139         25 VIDHTYDAVVVGAGGAGLRAALGLVE-----LGYKTACISKLFPTRS   66 (617)
T ss_pred             ccccccCEEEECccHHHHHHHHHHHH-----cCCcEEEEeccCCCCC
Confidence            33457899999999999999999999     9999999999876555

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.61  E-value=1.3e-06  Score=92.50  Aligned_cols=37  Identities=24%  Similarity=0.609  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~   61 (487)
                      ...||+|||||+|||+||..+++     .  |.+|+|+||....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae-----~~~G~~V~lieK~~~~   48 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKE-----WAPDLKVLIVEKANIK   48 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHH-----hCCCCeEEEEECCCcC
Confidence            45799999999999999999999     8  9999999998753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.61  E-value=1.3e-06  Score=91.83  Aligned_cols=40  Identities=23%  Similarity=0.212  Sum_probs=34.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC-ccce
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV-VGGR   64 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~-~GGr   64 (487)
                      ....||+|||||++||+||..+ +     .|.+|+|+||... .||+
T Consensus         5 ~~~~DVlVVG~G~AGl~AAi~A-~-----~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          5 IMITDVLIIGSGGAGARAAIEA-E-----RGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             eeccCEEEECccHHHHHHHHHH-h-----cCCCEEEEEccCCCCCcc
Confidence            3467999999999999999999 8     9999999999764 3444

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.61  E-value=6.1e-07  Score=93.52  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..|++++++++|++|..+++.+.|.+.+|+.+.+|.||+|++...
T Consensus       279 ~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       279 QYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            457899999999999887777788888888899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=1.3e-06  Score=93.02  Aligned_cols=39  Identities=21%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||+|||+||..+++     .|.+|+|+||....||
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae-----~G~~V~lieK~~~~~g   45 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE-----RGLRVAVVCKSLFGKA   45 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH-----CCCCEEEEeccCCCCC
Confidence            46799999999999999999999     9999999999875444

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.60  E-value=7.2e-07  Score=94.17  Aligned_cols=54  Identities=13%  Similarity=0.022  Sum_probs=40.0

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEE---EccCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELN---STKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~---~~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+   +.|++|+.++.|+++..+++++ +|.   +.+|+  .+.|+.||+|++-..
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~  197 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG  197 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence            455555644   3589999999999998877764 443   34553  589999999999864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.60  E-value=1.1e-06  Score=93.21  Aligned_cols=39  Identities=13%  Similarity=0.026  Sum_probs=35.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae-----~G~~VilveK~~~~~g   87 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSE-----HGFNTACITKLFPTRS   87 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHh-----cCCcEEEEEcCCCCCC
Confidence            45799999999999999999999     9999999999876555

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.59  E-value=8e-07  Score=90.77  Aligned_cols=60  Identities=18%  Similarity=0.100  Sum_probs=44.1

Q ss_pred             EeecchHHHHHHHHH---hcCCeEEeCCceEEEEEe--CCEE-EEEEc-cCceEecCEEEEccCCCC
Q 043512          251 AVEGGNWQMAAGLIN---RSDVALHLHEEIESISYL--REYY-ELNST-KGNSYTCQITVVATPLDE  310 (487)
Q Consensus       251 ~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~--~~~v-~V~~~-~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.++...+.+.|.+   +.|++|+++++|++|..+  ++.+ +|.+. ++.++.|+.||+|++-..
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            444556667777744   569999999999999876  4444 55543 335799999999999654

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08275 putative oxidoreductase; Provisional

Probab=98.59  E-value=7.5e-07  Score=93.68  Aligned_cols=42  Identities=26%  Similarity=0.387  Sum_probs=35.9

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCc
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVV   61 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~   61 (487)
                      |.......||+|||||+|||+||..+++     .  |.+|+|+||....
T Consensus         3 ~~~~~~~~DVlVIG~G~AGl~AAi~aa~-----~g~g~~VilveK~~~~   46 (554)
T PRK08275          3 MNTQEVETDILVIGGGTAGPMAAIKAKE-----RNPALRVLLLEKANVK   46 (554)
T ss_pred             CCceeEecCEEEECcCHHHHHHHHHHHH-----hCCCCeEEEEeCCCCC
Confidence            4444567899999999999999999998     5  7899999998753

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.58  E-value=3.2e-07  Score=92.99  Aligned_cols=42  Identities=24%  Similarity=0.409  Sum_probs=38.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +..||+||||||.|+.+|+.++.     +|++|+++|++|...|..+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~-----RGl~v~LvE~~D~AsGTSs   52 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAG-----RGLKVALVEKGDLASGTSS   52 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHh-----CCCeEEEEecCcccCcccC
Confidence            78999999999999999999999     9999999999997666544

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.57  E-value=1.9e-06  Score=74.72  Aligned_cols=41  Identities=22%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             CCeE-EeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          268 DVAL-HLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       268 G~~i-~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      |++| +.+.+|+.|...++++.|.+.+|..+.||+||+|++-
T Consensus       114 ~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  114 GITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            4333 3578999999999999899999999999999999874

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.57  E-value=3.1e-06  Score=89.48  Aligned_cols=40  Identities=15%  Similarity=0.148  Sum_probs=35.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ....||+|||||++||+||..+++     .|.+|+|+||....||
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~-----~G~~V~vleK~~~~~g   49 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLAR-----AGLSVAVLSKVFPTRS   49 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHH-----CCCcEEEEeccCCCCC
Confidence            346899999999999999999999     9999999999876555

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.56  E-value=1.8e-06  Score=91.20  Aligned_cols=38  Identities=18%  Similarity=0.259  Sum_probs=34.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~VlE~~~~~GG   63 (487)
                      ..||+|||||++||+||..+++     .|   .+|+|+||....||
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~-----~G~~~~~V~lleK~~~~~~   45 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAE-----RSGGKLSVAVVSKTQPMRS   45 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHH-----hCCCCCcEEEEEcccCCCC
Confidence            5799999999999999999999     88   89999999876555

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.56  E-value=1.1e-06  Score=93.75  Aligned_cols=39  Identities=15%  Similarity=0.138  Sum_probs=34.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||..+++     +|.+|+|+||....+|
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae-----~G~~VivleK~~~~~s   42 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ-----RGLDTIVLSLVPAKRS   42 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH-----cCCCEEEEeCCCCCCc
Confidence            35799999999999999999999     9999999999876444

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.55  E-value=9.2e-07  Score=94.14  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~   60 (487)
                      +...||+|||||++||++|..|++     . |.+|+|+|+.+.
T Consensus        30 ~~~~dVlIVGAGPaGL~lA~~Lar-----~~Gi~v~IiE~~~~   67 (634)
T PRK08294         30 PDEVDVLIVGCGPAGLTLAAQLSA-----FPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHhc-----CCCCcEEEEEcCCC
Confidence            457899999999999999999999     7 999999999753

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.54  E-value=2e-06  Score=91.00  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||+.+++     . .+|+|+||....||
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~-----~-~~VilleK~~~~~g   41 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP-----R-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh-----C-CCEEEEeCCCCCCC
Confidence            35799999999999999999998     7 89999999865444

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.54  E-value=6.5e-07  Score=87.84  Aligned_cols=49  Identities=10%  Similarity=0.117  Sum_probs=37.8

Q ss_pred             HHHHHHh-cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCC
Q 043512          260 AAGLINR-SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       260 ~~~l~~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +...++. -+.+|. .++|++|..+++++ +|.+.+|+.+.+|.||+|++..
T Consensus       101 ~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf  151 (392)
T PF01134_consen  101 MREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF  151 (392)
T ss_dssp             HHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred             HHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence            3334444 356774 78999999999887 9999999999999999999993

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR00551 nadB L-aspartate oxidase

Probab=98.54  E-value=4e-06  Score=86.91  Aligned_cols=38  Identities=29%  Similarity=0.402  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ..||+|||||++||+||..+++     .|. |+|+||.+..||.
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~-----~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD-----QGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh-----CCC-EEEEEccCCCCCc
Confidence            4699999999999999999999     997 9999999766663

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.54  E-value=2.2e-06  Score=84.37  Aligned_cols=43  Identities=30%  Similarity=0.370  Sum_probs=38.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||++|||||.|.+.++.|+++.   ...+|+|+||.+.++.-.
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~---p~~~I~i~Erl~~~A~ES   44 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELE---PDWSIAIFERLDSVALES   44 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhC---CCCeEEEEEecCcchhhc
Confidence            4689999999999999999999977   789999999998876543

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.54  E-value=2.6e-06  Score=87.68  Aligned_cols=52  Identities=15%  Similarity=-0.026  Sum_probs=38.6

Q ss_pred             HHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          258 QMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+.+.|.+   +.|++++.+ .|+.+..+++++ +|.+ +|+.+.++.||+|++-+..
T Consensus       121 ~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~  176 (466)
T PRK08401        121 HIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG  176 (466)
T ss_pred             HHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence            45555543   458999876 789988776665 5655 5668999999999998754

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.53  E-value=2.2e-06  Score=89.81  Aligned_cols=41  Identities=22%  Similarity=0.311  Sum_probs=35.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      .....||+|||||+|||+||..+ .     +|.+|+|+||.+..||.
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A-~-----~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCL-P-----SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHh-h-----cCCCEEEEEccCCCCCc
Confidence            34568999999999999999998 5     68999999999876663

>PTZ00367 squalene epoxidase; Provisional

Probab=98.53  E-value=2.2e-06  Score=89.49  Aligned_cols=35  Identities=34%  Similarity=0.500  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+||+|||||++|+++|..|++     +|++|+|+||+.
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar-----~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK-----QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh-----cCCEEEEEcccc
Confidence            46899999999999999999999     999999999974

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9.9e-07  Score=84.41  Aligned_cols=252  Identities=16%  Similarity=0.145  Sum_probs=129.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC---------------------CeEeccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS---------------------GQTFEAG   78 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~---------------------g~~~d~G   78 (487)
                      +.+||+|+|-|+.=...+..|+.     .|.+|+.+||++.-||-.+|.+..                     .+.+|+-
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~-----~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLi   77 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSV-----DGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLI   77 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeee-----cCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhc
Confidence            34999999999999999999999     999999999999999998886531                     1224444


Q ss_pred             ceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHh
Q 043512           79 ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRME  158 (487)
Q Consensus        79 ~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (487)
                      |.++..... +..++-+.++..-...-.. ...+.+..|........   ....+...+..++.+           .+..
T Consensus        78 PK~lmAn~~-Lvk~Li~T~V~~YL~fk~i-~gsfv~~~~k~~KVP~t---~~Ea~~s~lmgl~eK-----------rr~~  141 (440)
T KOG1439|consen   78 PKFLMANGE-LVKILIHTGVTRYLEFKSI-SGSFVYKKGKIYKVPAT---EAEALTSPLMGLFEK-----------RRVM  141 (440)
T ss_pred             hHhhhccch-HHHHHHHhchhhheEEEee-cceEEEECCeEEECCCC---HHHHhcCCccchhHH-----------HHHH
Confidence            444433332 2233344444332211100 11233444432332110   000122222222221           1222


Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcch---
Q 043512          159 SFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISG---  235 (487)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---  235 (487)
                      +|+.... .|..-..        .+.       .-+...+.++.+++.+.++....++..-.+.........++.++   
T Consensus       142 kFl~~V~-n~~e~~~--------~~~-------~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~  205 (440)
T KOG1439|consen  142 KFLKFVL-NYDEEDP--------KTW-------QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKET  205 (440)
T ss_pred             HHHHHHh-hhhhhcc--------ccc-------cccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHH
Confidence            3322211 1110000        000       01122234666666666554433221111111111111123333   


Q ss_pred             HHHHHh----hhcCCCC-ceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEE-eCCEE-EEEEccCceEecCEEEEc
Q 043512          236 LAGAVS----LAGSGGG-LWAVEGGNWQMAAGLINRS---DVALHLHEEIESISY-LREYY-ELNSTKGNSYTCQITVVA  305 (487)
Q Consensus       236 ~~~~~~----~~~~~~g-~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~-~~~~v-~V~~~~G~~~~ad~VV~a  305 (487)
                      +..+.-    +..++.. ..+|..|.+.+++..++..   |+++.+|.++.+|.. +++++ +|+. +++...+..||+-
T Consensus       206 ~~ri~~Y~~S~~~yg~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~-~~~v~~~k~vi~d  284 (440)
T KOG1439|consen  206 LERILLYVRSFARYGKSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKS-GGEVAKCKKVICD  284 (440)
T ss_pred             HHHHHHHHHHHhhcCCCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEec-CCceeecceEEec
Confidence            222222    2222223 3489999999999999853   999999999999998 44444 5554 4457788887776


Q ss_pred             cCCC
Q 043512          306 TPLD  309 (487)
Q Consensus       306 ~~~~  309 (487)
                      ....
T Consensus       285 pSY~  288 (440)
T KOG1439|consen  285 PSYF  288 (440)
T ss_pred             Cccc
Confidence            5543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.49  E-value=1.2e-06  Score=81.64  Aligned_cols=52  Identities=25%  Similarity=0.461  Sum_probs=40.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC--ccceeEEEeeCCeEecccceeEec
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV--VGGRMATVTISGQTFEAGASILHP   84 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~--~GGr~~s~~~~g~~~d~G~~~~~~   84 (487)
                      ...||||||||++||.||..|+.     +|++|+|+|+...  +||.+.        +..|+-++..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~-----aG~~V~ildQEgeqnlGGQAf--------WSfGGLF~vd   57 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELAD-----AGKRVLILDQEGEQNLGGQAF--------WSFGGLFLVD   57 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHh-----cCceEEEEcccccccccceee--------eecccEEEec
Confidence            46899999999999999999999     9999999998643  555443        4556655443

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.48  E-value=3.1e-06  Score=88.05  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             HHHHHHHHHh--cCCeEEeCCceEEEEEeCCEE-EEEEc--cCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINR--SDVALHLHEEIESISYLREYY-ELNST--KGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~--~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+.  .|++|+.+++|+++..+++++ +|.+.  +|+  .+.|+.||+|++-..
T Consensus       130 ~~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~  190 (510)
T PRK08071        130 KNLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG  190 (510)
T ss_pred             HHHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence            3466666554  489999999999998777765 55543  333  688999999998754

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.48  E-value=5.3e-07  Score=90.57  Aligned_cols=52  Identities=12%  Similarity=0.019  Sum_probs=39.4

Q ss_pred             HHHHHHHH---hcCCeEEeCCceEEEEEeCCEEE-EEEccC--ceEecCEEEEccCCC
Q 043512          258 QMAAGLIN---RSDVALHLHEEIESISYLREYYE-LNSTKG--NSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G--~~~~ad~VV~a~~~~  309 (487)
                      ++.+.|.+   +.|++|+++++|+++..+++++. +.+.+|  ..++||.||+|++..
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            45555544   45999999999999998877764 444455  358999999999874

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.47  E-value=3.9e-06  Score=88.62  Aligned_cols=39  Identities=18%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GG   63 (487)
                      ...||+|||||++||+||..+++     .  |.+|+|+||....||
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~-----~g~g~~V~lleK~~~~~g   43 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAE-----ANPNLKIALISKVYPMRS   43 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHH-----hCCCCcEEEEEccCCCCC
Confidence            35799999999999999999998     5  579999999876665

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.47  E-value=4.6e-06  Score=87.91  Aligned_cols=42  Identities=14%  Similarity=0.170  Sum_probs=34.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..||+|||||++||+||..+++..   +|.+|+|+||....||.+
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g---~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEAN---PHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhC---CCCcEEEEEccCCCCCCc
Confidence            479999999999999999999811   268999999997766633

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.46  E-value=3e-06  Score=89.69  Aligned_cols=35  Identities=20%  Similarity=0.317  Sum_probs=32.1

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      |+|||||+|||+||..+++     .|.+|+|+||...+||
T Consensus         1 VlVVG~G~AGl~AAl~Aae-----~G~~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE-----LGYHVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHH-----cCCCEEEEEecCCCCC
Confidence            7999999999999999999     9999999999875653

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PLN02815 L-aspartate oxidase

Probab=98.43  E-value=3e-06  Score=89.25  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ..||+|||||++||+||..+++     .| +|+|+||....||
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae-----~G-~VvlleK~~~~gg   65 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAE-----YG-TVAIITKDEPHES   65 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhh-----CC-CEEEEECCCCCCC
Confidence            4799999999999999999999     99 9999999887666

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.43  E-value=4e-06  Score=87.26  Aligned_cols=54  Identities=13%  Similarity=0.037  Sum_probs=38.9

Q ss_pred             HHHHHHHHHh----cCCeEEeCCceEEEEEeCCEE-EEEEc-cCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINR----SDVALHLHEEIESISYLREYY-ELNST-KGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~----~G~~i~~~~~V~~I~~~~~~v-~V~~~-~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+.    .|++|+.+++|+++..+++++ +|.+. +++  .+.|+.||+|++-..
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            4566666442    389999999999998776665 55543 232  589999999999753

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.42  E-value=1.8e-06  Score=88.28  Aligned_cols=61  Identities=7%  Similarity=0.026  Sum_probs=42.6

Q ss_pred             ceEee-cchHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-E-EEEEccCceEecCEEEEccCCCC
Q 043512          249 LWAVE-GGNWQMAAGLINRSDVALHLHEEIESISYLREY-Y-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       249 ~~~~~-gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .|++. .-+.++....+++.|++++.++ |+++..++++ + .|++.+|++++||.||=|++...
T Consensus       148 ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  148 AYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRS  211 (454)
T ss_dssp             EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred             eEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccc
Confidence            34443 4456666666777899998875 7888776544 4 78999999999999999999864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.41  E-value=3.9e-06  Score=83.39  Aligned_cols=55  Identities=5%  Similarity=-0.022  Sum_probs=43.7

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccC--ceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKG--NSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G--~~~~ad~VV~a~~~~~~  311 (487)
                      .++.++|.+   +.|+++..+++|+++..+++++ .|.+.++  ..+.||+||+|++.|.+
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S  323 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFS  323 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcC
Confidence            455555544   5699999999999999888877 5666665  48999999999999843

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.39  E-value=4.1e-06  Score=95.16  Aligned_cols=42  Identities=21%  Similarity=0.445  Sum_probs=38.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ....||+|||+|.+|++||..+++     .|.+|+|+||.+..||.+
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae-----~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAAS-----CGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEEccCCCCCch
Confidence            456899999999999999999999     999999999999888854

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.37  E-value=4.2e-06  Score=86.64  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +||+|||||++|+.||..+++     .|.+|+|+|++...
T Consensus         1 yDViVIGaG~AGl~aA~ala~-----~G~~v~Lie~~~~~   35 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR-----MGAKTLLLTLNLDT   35 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH-----CCCCEEEEeccccc
Confidence            589999999999999999999     99999999997433

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.36  E-value=1.6e-05  Score=83.36  Aligned_cols=40  Identities=33%  Similarity=0.469  Sum_probs=35.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ....||+|||+|++||+||..+++     . .+|+|+||....||.
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~-----~-~~VilveK~~~~~g~   45 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE-----H-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH-----C-CCEEEEeccCCCCCC
Confidence            456899999999999999999998     7 899999998876663

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.35  E-value=5.8e-07  Score=98.42  Aligned_cols=43  Identities=28%  Similarity=0.444  Sum_probs=40.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      ..++|+|||||+|||+||++|++     .|++|+|+|+.+.+||.++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr-----~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR-----AGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-----CCCeEEEEecccccCceeee
Confidence            45799999999999999999999     99999999999999998864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.34  E-value=6.3e-07  Score=98.88  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=40.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +..++|+|||||+|||+||++|++     .|++|+|||+.+++||.++
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar-----~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAV-----EGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEeeCCCCCceEE
Confidence            457899999999999999999999     9999999999999999875

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.34  E-value=7.4e-07  Score=90.92  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=35.1

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +...+.+||+|||||++|++||+.|++     +|++|+|+|++.
T Consensus        34 ~~~~~~~DViIVGaGPAG~~aA~~LA~-----~G~~VlllEr~~   72 (450)
T PLN00093         34 KLSGRKLRVAVIGGGPAGACAAETLAK-----GGIETFLIERKL   72 (450)
T ss_pred             CcCCCCCeEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCC
Confidence            344567899999999999999999999     999999999974

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.32  E-value=1.5e-05  Score=79.43  Aligned_cols=74  Identities=20%  Similarity=0.235  Sum_probs=50.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee--CCeEecccceeEecCChhHHHHHHHc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI--SGQTFEAGASILHPKNYHTVNFTKLL   96 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~--~g~~~d~G~~~~~~~~~~~~~~~~~l   96 (487)
                      .+++=|||+|||+|+||.+|-+..+- .|.+|+|||+.+.+||.+-....  .||..--|.. .......++++++..
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~-pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~eclwdLls~I   77 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKM-PGENIHILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYECLWDLLSSI   77 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCC-CccceEEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhHHHHHHHHhC
Confidence            46788999999999999999984322 67899999999999998876543  3554433322 222233344555443

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.31  E-value=1.9e-05  Score=83.33  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=30.8

Q ss_pred             cEEEECCChhHHHHHHHHH----HhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLR----QYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~----~~~~~~~G~~V~VlE~~~~   60 (487)
                      ||+|||||+|||+||..++    +     +|.+|+|+||...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e-----~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK-----KGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh-----CCCeEEEEEccCC
Confidence            7999999999999999998    6     8999999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.31  E-value=6.6e-07  Score=92.25  Aligned_cols=47  Identities=15%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++++++++|++|..+++++.+++.+|+++++|.||+|++...
T Consensus       226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCc
Confidence            34569999999999999887777777777888899999999998764

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.30  E-value=1.1e-06  Score=89.75  Aligned_cols=49  Identities=24%  Similarity=0.264  Sum_probs=41.7

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      ...+..++|+|||||+||++||..|++..   .|++|+|||+.+.+||..+.
T Consensus        21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~---~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         21 SSTSEPLHVCVVGSGPAGFYTADKLLKAH---DGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCCCCCcEEEECccHHHHHHHHHHHhhC---CCCeEEEEecCCCCcceEee
Confidence            34445678999999999999999998632   59999999999999998874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.30  E-value=9.3e-06  Score=80.16  Aligned_cols=52  Identities=12%  Similarity=0.099  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc-eEecCEEEEccCCCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN-SYTCQITVVATPLDEL  311 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~a~~~~~~  311 (487)
                      ....++..++++|++|++++.|++|..+    +|++.+|+ .+.++.||.|++....
T Consensus       211 l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----~v~~~~g~~~I~~~tvvWaaGv~a~  263 (405)
T COG1252         211 LSKYAERALEKLGVEVLLGTPVTEVTPD----GVTLKDGEEEIPADTVVWAAGVRAS  263 (405)
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECCC----cEEEccCCeeEecCEEEEcCCCcCC
Confidence            4556777788899999999999999765    36666776 4999999999998754

>PRK12831 putative oxidoreductase; Provisional

Probab=98.30  E-value=1.1e-06  Score=90.30  Aligned_cols=44  Identities=27%  Similarity=0.323  Sum_probs=40.4

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ....+||+|||||++||+||++|++     .|++|+|+|+.+.+||.+.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~-----~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAK-----MGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEecCCCCCCeee
Confidence            3457899999999999999999999     9999999999999999775

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.27  E-value=8.1e-07  Score=85.15  Aligned_cols=49  Identities=33%  Similarity=0.424  Sum_probs=40.8

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCC-CCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKN-WHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~-~G~~V~VlE~~~~~GGr~~   66 (487)
                      .....||+|||||++|||||.+|.++..+- ...+|.|+||...+||.+-
T Consensus        73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl  122 (621)
T KOG2415|consen   73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL  122 (621)
T ss_pred             hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee
Confidence            344679999999999999999999865421 5689999999999999665

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.27  E-value=9.3e-07  Score=91.07  Aligned_cols=41  Identities=29%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..+++     .|++|+|+|+++.+||.|.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~-----~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ-----LGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-----CCCeEEEEecCCceeeeec
Confidence            4899999999999999999999     9999999998778999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.24  E-value=1e-06  Score=90.26  Aligned_cols=51  Identities=14%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             HHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          260 AAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       260 ~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ....+++.|++++++++|++|..+++++.|.+.+|+++.+|.||+|++...
T Consensus       213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       213 LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSP  263 (446)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCc
Confidence            333445669999999999999877667777777888899999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.23  E-value=1.6e-06  Score=94.73  Aligned_cols=44  Identities=30%  Similarity=0.466  Sum_probs=40.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      +..++|+|||||++|++||+.|++     .|++|+|+|+.+.+||.++.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar-----~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLAR-----AGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-----cCCeEEEEecccccCcceee
Confidence            456899999999999999999999     99999999999999998764

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.23  E-value=1.2e-06  Score=90.34  Aligned_cols=52  Identities=12%  Similarity=0.174  Sum_probs=41.5

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC--ceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKG--NSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~a~~~~~  310 (487)
                      .....+++.|++++++++|++|..+++++.+.+.+|  +++.+|.||++++...
T Consensus       216 ~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       216 VVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence            333444566999999999999998877887777677  4799999999998754

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.23  E-value=1.4e-06  Score=89.22  Aligned_cols=53  Identities=9%  Similarity=0.124  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .......+++.|++++++++|++|..+++.+.+.+ +|+++.+|.||+|++...
T Consensus       201 ~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~-~g~~i~~D~viva~G~~p  253 (438)
T PRK07251        201 AALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVT-EDETYRFDALLYATGRKP  253 (438)
T ss_pred             HHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEE-CCeEEEcCEEEEeeCCCC
Confidence            33444455667999999999999987766666654 566899999999988754

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.22  E-value=1.7e-05  Score=79.64  Aligned_cols=66  Identities=26%  Similarity=0.401  Sum_probs=53.2

Q ss_pred             CCceEeecch---HHHHHHHHHhc--CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          247 GGLWAVEGGN---WQMAAGLINRS--DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       247 ~g~~~~~gG~---~~l~~~l~~~~--G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      .+.|.+.+|.   ..++.+|++.+  |++|+.+++|++|+.+++++.|+|.+|..+.||.||+|++.+...
T Consensus       122 gal~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~  192 (381)
T TIGR03197       122 GGLFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ  192 (381)
T ss_pred             CceEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence            3456666653   56777776522  899999999999998888899999999779999999999998754

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.22  E-value=1.3e-06  Score=85.42  Aligned_cols=44  Identities=30%  Similarity=0.520  Sum_probs=40.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATV   68 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~   68 (487)
                      ...+++|||||++|++||..|++     .|++|.++||++.+|||+...
T Consensus       123 v~~svLVIGGGvAGitAAl~La~-----~G~~v~LVEKepsiGGrmak~  166 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELAD-----MGFKVYLVEKEPSIGGRMAKL  166 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHH-----cCCeEEEEecCCcccccHHhh
Confidence            45789999999999999999999     999999999999999997643

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.21  E-value=1.3e-06  Score=90.66  Aligned_cols=40  Identities=28%  Similarity=0.395  Sum_probs=34.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ++|+|||||++||++|..|.+     .|++|++|||++.+||--+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e-----~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLE-----EGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHH-----TT-EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHH-----CCCCCeEEecCCCCCccCe
Confidence            689999999999999999999     9999999999999999764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.20  E-value=1.5e-06  Score=89.55  Aligned_cols=54  Identities=7%  Similarity=0.145  Sum_probs=42.6

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~~~  310 (487)
                      .......+++.|++++++++|++|..+++++.+.+.+|   +++.+|.||++++...
T Consensus       216 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        216 SKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            33444445567999999999999998777777776665   6799999999998764

>PRK14727 putative mercuric reductase; Provisional

Probab=98.19  E-value=2.1e-06  Score=88.77  Aligned_cols=48  Identities=25%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      +...+..+||+|||||++|+++|..|++     .|.+|+|+|+.+.+||.|..
T Consensus        10 ~~~~~~~~dvvvIG~G~aG~~~a~~~~~-----~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         10 MTRSKLQLHVAIIGSGSAAFAAAIKAAE-----HGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             cccCCCCCcEEEECCCHHHHHHHHHHHh-----CCCeEEEEEccCcceeEecc
Confidence            4556677999999999999999999999     99999999998889998863

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.19  E-value=1.9e-06  Score=88.26  Aligned_cols=41  Identities=29%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC-CccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG-VVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~-~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+.+ .+||.|.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~-----~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAK-----AGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHH-----CCCeEEEEcCCCCccceeEe
Confidence            5899999999999999999999     999999999976 4798875

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.19  E-value=1.6e-06  Score=88.90  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=37.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+. .+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~-----~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAE-----HGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----CCCcEEEeccc-cccccee
Confidence            5899999999999999999999     99999999995 6899764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.17  E-value=1.7e-06  Score=87.97  Aligned_cols=39  Identities=26%  Similarity=0.511  Sum_probs=32.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ||||||||++|++||..+++     .|.+|+|+|+.+.+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr-----~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR-----AGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH-----TTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHH-----CCCEEEEEECCccCCCcce
Confidence            89999999999999999999     9999999999999998653

>PRK06116 glutathione reductase; Validated

Probab=98.16  E-value=1.9e-06  Score=88.47  Aligned_cols=48  Identities=13%  Similarity=0.165  Sum_probs=39.7

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512          263 LINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+++.|++++++++|++|..++++ +.|.+.+|+++.+|.||++++...
T Consensus       217 ~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        217 EMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             HHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence            345669999999999999876554 778888888899999999998653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.15  E-value=3.2e-06  Score=86.55  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...++|+|||||++||+||+.|++     .|++|+|+|+.+.+||.+.
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~-----~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAK-----AGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcEee
Confidence            356899999999999999999999     9999999999999998664

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.15  E-value=2.4e-06  Score=88.15  Aligned_cols=42  Identities=24%  Similarity=0.314  Sum_probs=38.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|+.+.+||.|.
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~-----~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAAD-----LGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCccccccc
Confidence            35899999999999999999999     9999999999878999663

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.14  E-value=2.7e-06  Score=87.92  Aligned_cols=41  Identities=29%  Similarity=0.379  Sum_probs=38.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|+. .+||.|.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~-----~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQ-----LGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-----CCCeEEEEEcc-CCCcceE
Confidence            46899999999999999999999     99999999995 7899875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.14  E-value=2.8e-06  Score=94.61  Aligned_cols=42  Identities=31%  Similarity=0.403  Sum_probs=39.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..++|+|||||++||+||++|++     .|++|+|||+.+.+||..+
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~-----~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK-----YGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCCCcceee
Confidence            46799999999999999999999     9999999999999999765

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.14  E-value=3.2e-06  Score=85.54  Aligned_cols=44  Identities=27%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .....+|+|||||++||+||+.|++     .|++|+|+|+.+.+||++.
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~-----~G~~Vtv~e~~~~~GGll~  163 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSR-----AGHDVTVFERVALDGGLLL  163 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHh-----CCCeEEEeCCcCCCceeEE
Confidence            3345899999999999999999999     9999999999999999887

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.13  E-value=3.4e-06  Score=90.52  Aligned_cols=43  Identities=26%  Similarity=0.492  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +..++|+|||||++||+||+.|++     .|++|+|+|+.+.+||...
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~-----~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLAR-----NGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCceee
Confidence            356899999999999999999999     9999999999999999765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.12  E-value=3.3e-06  Score=88.80  Aligned_cols=42  Identities=24%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      ..+||+|||||+|||+||..|++     .|++|+|+|++ .+||.+..
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar-----~g~~V~liE~~-~~GG~~~~   44 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGR-----AKLDTLIIEKD-DFGGQITI   44 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEecC-CCCceEEe
Confidence            35899999999999999999999     99999999995 68998753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.12  E-value=6e-05  Score=83.76  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .....||+|||||++||+||..+++     .|.+|+|+||...
T Consensus        10 ~~~~~DVlVVG~G~AGl~AAl~Aa~-----~G~~V~lleK~~~   47 (897)
T PRK13800         10 LRLDCDVLVIGGGTAGTMAALTAAE-----HGANVLLLEKAHV   47 (897)
T ss_pred             ceeecCEEEECcCHHHHHHHHHHHH-----CCCeEEEEecccc
Confidence            3356899999999999999999999     9999999999863

>PRK06370 mercuric reductase; Validated

Probab=98.12  E-value=3.3e-06  Score=87.06  Aligned_cols=41  Identities=27%  Similarity=0.443  Sum_probs=36.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .++||+|||||++|++||..|++     .|++|+|+|+. .+||.|.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~-----~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAG-----LGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-ccCCcee
Confidence            35899999999999999999999     99999999996 5777664

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.11  E-value=2.8e-06  Score=85.64  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      +||+|||||++|++||+.|++     +|++|+|+||+...+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~-----~G~~V~llE~~~~~~   36 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS-----AGIQTFLLERKPDNA   36 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh-----CCCcEEEEecCCCCC
Confidence            589999999999999999999     999999999986543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.11  E-value=4.5e-06  Score=84.09  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=39.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCCCccceeEEE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNGVVGGRMATV   68 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~~~GGr~~s~   68 (487)
                      ..++|+|||||++|++||.+|+ +     .|++|+|||+.+.+||..+.-
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~-----~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKH-----ERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHh-----cCCeEEEEecCCCCccEEEEe
Confidence            4578999999999999999765 5     799999999999999998864

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.11  E-value=3.2e-06  Score=87.21  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=37.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|+ +.+||.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~-----~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK-----LGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-----CCCeEEEEeC-Ccccccee
Confidence            35899999999999999999999     9999999999 67899764

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=98.10  E-value=3.9e-06  Score=89.17  Aligned_cols=47  Identities=34%  Similarity=0.543  Sum_probs=42.3

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ++.....++|+|||+|++||+||-.|-+     .|+-|+|+||.+|+||-..
T Consensus      1779 pp~~rtg~~vaiigsgpaglaaadqlnk-----~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1779 PPAFRTGKRVAIIGSGPAGLAAADQLNK-----AGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             CcccccCcEEEEEccCchhhhHHHHHhh-----cCcEEEEEEecCCcCceee
Confidence            4445557899999999999999999999     9999999999999999776

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.09  E-value=4.2e-06  Score=80.94  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +.+||||||||+||++|..|.+     +|++|+|||++..+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r-----~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR-----KGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH-----cCCeEEEEeecccc
Confidence            5689999999999999999999     99999999997654

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.08  E-value=5.1e-06  Score=90.70  Aligned_cols=43  Identities=30%  Similarity=0.410  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...++|+|||||++||+||+.|++     .|++|+|+|+.+.+||...
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~-----~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAK-----RGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCeee
Confidence            356799999999999999999999     9999999999989999765

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.07  E-value=4.5e-06  Score=86.13  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||.+|++     .|.+|+|+|++ .+||.|.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~-----~G~~V~lie~~-~~GG~c~   43 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQ-----LGLKTAVVEKK-YWGGVCL   43 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-CCCCcee
Confidence            5899999999999999999999     99999999995 6888775

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.06  E-value=6.3e-06  Score=85.01  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=38.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..++|+|||||++|++||..|++     .|++|+|+|+.+.+||...
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~-----~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLAR-----AGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh-----CCCcEEEEecCCCCCceee
Confidence            45799999999999999999999     9999999999999998754

>TIGR02053 MerA mercuric reductase

Probab=98.06  E-value=4.4e-06  Score=86.22  Aligned_cols=39  Identities=28%  Similarity=0.357  Sum_probs=35.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +||+|||||++|++||..|++     .|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~-----~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE-----LGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCc-ccCCee
Confidence            699999999999999999999     999999999975 788764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK10262 thioredoxin reductase; Provisional

Probab=98.06  E-value=5.1e-06  Score=81.36  Aligned_cols=44  Identities=20%  Similarity=0.337  Sum_probs=38.6

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      +...+||+|||||++||+||..|++     .|++|+++|+. ..||.+..
T Consensus         3 ~~~~~~vvIIGgGpaGl~aA~~l~~-----~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          3 TTKHSKLLILGSGPAGYTAAVYAAR-----ANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH-----CCCCeEEEEee-cCCCceec
Confidence            4567899999999999999999999     99999999975 67887654

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.05  E-value=6.7e-06  Score=84.61  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=39.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...++|+|||||++|+++|+.|++     .|++|+|+|+++.+||...
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~-----~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLAR-----KGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-----CCCeEEEEccCCCCCcEee
Confidence            456899999999999999999999     9999999999999998654

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.04  E-value=5.7e-06  Score=86.99  Aligned_cols=42  Identities=24%  Similarity=0.479  Sum_probs=38.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC--CccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG--VVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~--~~GGr~~   66 (487)
                      ...||+|||+|++||+||..+++     .|.+|+|+||.+  .+||.+.
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~-----~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD-----AGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCCCCcee
Confidence            46899999999999999999999     999999999998  7888654

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.04  E-value=4.5e-05  Score=71.12  Aligned_cols=39  Identities=26%  Similarity=0.511  Sum_probs=35.6

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      -|||||+|++||+|+..+-.     .|-.|+++|++..+||...
T Consensus        11 pvvVIGgGLAGLsasn~iin-----~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN-----KGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh-----cCCeEEEEeccCCcCCcce
Confidence            49999999999999999999     8888999999999998653

>PRK14694 putative mercuric reductase; Provisional

Probab=98.04  E-value=5.3e-06  Score=85.62  Aligned_cols=42  Identities=24%  Similarity=0.398  Sum_probs=38.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...+||+|||||++|++||..|++     .|++|+|+|+. .+||.|.
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~-----~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATE-----RGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEEcc-cccccee
Confidence            356899999999999999999999     99999999996 6899775

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.04  E-value=6.8e-06  Score=87.97  Aligned_cols=42  Identities=31%  Similarity=0.480  Sum_probs=39.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..++|+|||||++||++|+.|++     .|++|+|+|+++.+||..+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~-----~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLR-----KGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCceee
Confidence            45799999999999999999999     9999999999999999765

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.04  E-value=6.2e-06  Score=89.10  Aligned_cols=41  Identities=15%  Similarity=0.109  Sum_probs=36.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      .+..++|+|||||+|||+||++|++     .|++|+|+|+....|+
T Consensus       380 ~~tgKKVaVVGaGPAGLsAA~~La~-----~Gh~Vtv~E~~~i~gl  420 (1028)
T PRK06567        380 EPTNYNILVTGLGPAGFSLSYYLLR-----SGHNVTAIDGLKITLL  420 (1028)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHh-----CCCeEEEEcccccccc
Confidence            3457899999999999999999999     9999999999766554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.04  E-value=7e-06  Score=87.80  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +..++|+|||||++||++|+.|++     .|++|+|+|+.+.+||..+
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~-----~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILAR-----AGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-----cCCcEEEEeCCCCCCCeee
Confidence            357899999999999999999999     9999999999999999765

>PTZ00058 glutathione reductase; Provisional

Probab=98.03  E-value=5.2e-06  Score=86.75  Aligned_cols=41  Identities=22%  Similarity=0.416  Sum_probs=37.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|.+||..+++     .|.+|+|+|+. .+||.|-
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~-----~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAAR-----NKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH-----cCCeEEEEecc-ccccccc
Confidence            46799999999999999999999     99999999996 7999774

>PRK13748 putative mercuric reductase; Provisional

Probab=98.03  E-value=5.5e-06  Score=87.66  Aligned_cols=41  Identities=27%  Similarity=0.375  Sum_probs=37.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|.+|+|+|++ .+||-|.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~-----~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE-----QGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-----CCCeEEEEecC-cceeecc
Confidence            36899999999999999999999     99999999997 7999774

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=0.00024  Score=67.70  Aligned_cols=45  Identities=27%  Similarity=0.341  Sum_probs=41.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI   70 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~   70 (487)
                      .+||+|.|-|+--...+..|+.     +|.+|+++|+++.-|+-.++.+.
T Consensus         6 ~yDvii~GTgl~esils~~Ls~-----~~k~VlhiD~Nd~YG~~~asltl   50 (434)
T COG5044           6 LYDVIILGTGLRESILSAALSW-----DGKNVLHIDKNDYYGSTSASLTL   50 (434)
T ss_pred             cccEEEecccHHHHHHHHHhhh-----cCceEEEEeCCCccCccccceeH
Confidence            6999999999999999999999     99999999999999998887653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.01  E-value=9.4e-06  Score=83.51  Aligned_cols=43  Identities=26%  Similarity=0.505  Sum_probs=39.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +..++|+|||||++|++||+.|++     .|++|+|+|+.+.+||..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~-----~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILAR-----AGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCCCCceee
Confidence            356899999999999999999999     9999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.00  E-value=7.2e-06  Score=86.59  Aligned_cols=43  Identities=30%  Similarity=0.446  Sum_probs=39.0

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ....+.||+|||+|++||+||+.+++     .|.+|+|+||.+..||.
T Consensus         7 ~~~~~~DVvVVG~G~AGl~AA~~aae-----~G~~VivlEk~~~~gG~   49 (584)
T PRK12835          7 NFDREVDVLVVGSGGGGMTAALTAAA-----RGLDTLVVEKSAHFGGS   49 (584)
T ss_pred             CccCcCCEEEECccHHHHHHHHHHHH-----CCCcEEEEEcCCCCCch
Confidence            45567899999999999999999999     99999999999888874

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.98  E-value=7.8e-06  Score=84.50  Aligned_cols=42  Identities=26%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec------CCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER------NGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~------~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..+++     .|.+|+|+|+      ...+||.|.
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~-----~g~~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQ-----LGLKVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHh-----CCCeEEEEecccCCCCCCCcCCccc
Confidence            35899999999999999999999     9999999998      356777664

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.98  E-value=6.8e-05  Score=69.74  Aligned_cols=43  Identities=16%  Similarity=0.237  Sum_probs=36.3

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ...+.+|.|||||||.|+++|..|.-.+   .+.+|.|+|+...++
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrh---p~l~V~vleke~~la   86 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRH---PSLKVAVLEKEKSLA   86 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcC---CCceEEeeehhhhhc
Confidence            3445789999999999999999997633   699999999987765

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.97  E-value=8.4e-06  Score=80.93  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..||+|||||++|+.||+.|++     .|++|+|+|+.+..
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr-----~Gl~V~LiE~rp~~   37 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAK-----RGVPVELYEMRPVK   37 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-----CCCcEEEEEccCcc
Confidence            4699999999999999999999     99999999987654

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=7.7e-06  Score=78.54  Aligned_cols=43  Identities=28%  Similarity=0.451  Sum_probs=35.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCCccceeEEE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGVVGGRMATV   68 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~~GGr~~s~   68 (487)
                      +.+||+|||||++||+||.++++     +|.+ ++|+|+ ..+||.....
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r-----~~l~~~li~~~-~~~gg~~~~~   45 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR-----AGLKVVLILEG-GEPGGQLTKT   45 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH-----cCCCcEEEEec-CCcCCccccc
Confidence            46899999999999999999999     9998 666666 5678766544

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.97  E-value=9.6e-06  Score=85.31  Aligned_cols=44  Identities=27%  Similarity=0.292  Sum_probs=39.2

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +....||+|||+|++|++||..+++     .|.+|+|+||...+||.+.
T Consensus         4 ~~~~~DvvVvG~G~aG~~aA~~aa~-----~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          4 TVQEYDVVVVGSGAAGMVAALTAAH-----RGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEeCCCCCCcccc
Confidence            3447899999999999999999999     9999999999988887544

>PLN02507 glutathione reductase

Probab=97.97  E-value=9e-06  Score=84.34  Aligned_cols=53  Identities=11%  Similarity=0.221  Sum_probs=43.0

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+...+++.|++|+++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus       248 ~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p  300 (499)
T PLN02507        248 AVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP  300 (499)
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence            33444455679999999999999877777778888888899999999998754

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.95  E-value=9.1e-06  Score=84.35  Aligned_cols=52  Identities=8%  Similarity=-0.010  Sum_probs=41.8

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .....+++.|+++++++.|++|...++.+.|.+.+|+++.+|.||++++...
T Consensus       227 ~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        227 KVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             HHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence            3344455669999999999999876666777777888899999999999764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.92  E-value=1.3e-05  Score=82.82  Aligned_cols=48  Identities=6%  Similarity=0.115  Sum_probs=38.5

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512          263 LINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+++.|+++++++.|++|..++++ ..|.+.+|+++.+|.||++++...
T Consensus       240 ~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P  288 (486)
T TIGR01423       240 QLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP  288 (486)
T ss_pred             HHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence            344569999999999999876444 567777788899999999998653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.90  E-value=1.8e-05  Score=81.76  Aligned_cols=42  Identities=29%  Similarity=0.453  Sum_probs=39.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..++|+|||||++|++||..|++     .|++|+|+|+.+++||.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~-----~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR-----AGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----cCCeEEEEecCCCCCceee
Confidence            45799999999999999999999     9999999999999998775

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.88  E-value=1.7e-05  Score=84.25  Aligned_cols=41  Identities=29%  Similarity=0.516  Sum_probs=36.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC-CCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~-~~~GGr~~   66 (487)
                      .+||+|||||.+|.+||..+++     .|.+|+|+|+. +.+||-|-
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~-----~G~kV~lie~~~~~lGGtCv  157 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME-----RGLKVIIFTGDDDSIGGTCV  157 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeCCCCcccccee
Confidence            5799999999999999999999     99999999974 46888764

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.88  E-value=1.4e-05  Score=89.44  Aligned_cols=42  Identities=19%  Similarity=0.360  Sum_probs=39.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      .+||+|||||++||+||..|++     .|++|+|+|+.+.+||....
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar-----~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAAR-----AGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEecCCCCCCeeec
Confidence            5799999999999999999999     99999999999999998763

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.87  E-value=1.8e-05  Score=80.07  Aligned_cols=42  Identities=26%  Similarity=0.357  Sum_probs=38.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+|++|||||++|.+||.++++     .|.+|.++|+...+||-|-
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~-----~G~kvalvE~~~~lGGtCl   44 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQ-----LGLKVALVEKGERLGGTCL   44 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-----CCCCEEEEeecCCcCceEE
Confidence            57999999999999999999999     9999999999878998775

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.86  E-value=1.5e-05  Score=84.30  Aligned_cols=38  Identities=16%  Similarity=0.177  Sum_probs=34.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +.||+|||||+|||+||..+++     .|.+|+|+||....||
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~-----~G~~V~lieK~~~~~g   40 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE-----AGVHVDLFSLVPVKRS   40 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH-----cCCcEEEEEccCCCCC
Confidence            4599999999999999999999     9999999999876555

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.86  E-value=2.5e-05  Score=82.57  Aligned_cols=44  Identities=32%  Similarity=0.441  Sum_probs=39.8

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .....+|+|||||++||++|+.|++     .|++|+|+|+.+.+||..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~-----~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRR-----MGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCeee
Confidence            3456789999999999999999999     9999999999999999654

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.85  E-value=1.8e-05  Score=75.53  Aligned_cols=36  Identities=33%  Similarity=0.488  Sum_probs=33.0

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .....||||||||++|.+.|+.|+|     .|.+|.|+||.
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~k-----dGRrVhVIERD   77 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAK-----DGRRVHVIERD   77 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhh-----CCcEEEEEecc
Confidence            3456899999999999999999999     99999999995

>PLN02546 glutathione reductase

Probab=97.84  E-value=2.3e-05  Score=82.04  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=37.5

Q ss_pred             HHHHHHhcCCeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEccCCCC
Q 043512          260 AAGLINRSDVALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       260 ~~~l~~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +...+++.|++|++++.|++|..++ +.+.|.+.+++...+|.||++++...
T Consensus       299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~P  350 (558)
T PLN02546        299 VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKP  350 (558)
T ss_pred             HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeecccc
Confidence            3344456799999999999998643 44566666664455899999998764

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.83  E-value=1.5e-05  Score=72.17  Aligned_cols=33  Identities=33%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ||+|||||+||++||..|++     .|.+|+|+|+.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~-----~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR-----PGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-----TTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhc-----CCCeEEEEecccc
Confidence            79999999999999999999     9999999988754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.82  E-value=0.00033  Score=69.63  Aligned_cols=61  Identities=10%  Similarity=0.103  Sum_probs=43.6

Q ss_pred             ceEeecchH-HHHHHHHHh----cCCeEEeCCceEEEEEeCC-EE-EEEEcc--C--ceEecCEEEEccCCC
Q 043512          249 LWAVEGGNW-QMAAGLINR----SDVALHLHEEIESISYLRE-YY-ELNSTK--G--NSYTCQITVVATPLD  309 (487)
Q Consensus       249 ~~~~~gG~~-~l~~~l~~~----~G~~i~~~~~V~~I~~~~~-~v-~V~~~~--G--~~~~ad~VV~a~~~~  309 (487)
                      ..+..+..+ .+...|.+.    .+++|+.++.+.+|..+++ .+ +|.+.+  +  .++.++.||+|++--
T Consensus       124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~  195 (518)
T COG0029         124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGL  195 (518)
T ss_pred             EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence            445555544 466666553    3899999999999998887 55 665532  2  478999999999854

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.82  E-value=1.3e-05  Score=77.53  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~   60 (487)
                      +|+||||||.+|+.+|.+|++     .| .+|+|+|+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~-----~~~~~VlvlEaG~~   35 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSE-----AGNKKVLVLEAGPR   35 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTT-----STTS-EEEEESSBS
T ss_pred             CCEEEECcCHHHHHHHHHHhh-----CCCCcEEEEEcccc
Confidence            599999999999999999999     87 79999999765

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.81  E-value=2.1e-05  Score=78.67  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=33.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      .||+|||||++|+.||+.|++     .|++|+|+|+++..|-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr-----~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQ-----AGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeccccccC
Confidence            379999999999999999999     9999999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.80  E-value=3.2e-05  Score=76.76  Aligned_cols=42  Identities=26%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..++|+|||||++|+++|..|++     .|++|+|+|+.+.+||...
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~-----~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLAC-----LGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCceee
Confidence            45799999999999999999999     9999999999999998764

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=97.80  E-value=0.00012  Score=80.27  Aligned_cols=55  Identities=13%  Similarity=0.093  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeC--CEEEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLR--EYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ....+...+++.|++|++++.|++|..++  ....|.+.+|+.+.+|.||++++...
T Consensus       189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rP  245 (847)
T PRK14989        189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRP  245 (847)
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCccc
Confidence            34555666677899999999999997643  23467888999999999999999764

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.78  E-value=9.8e-05  Score=72.40  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=43.9

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ..+++.+.+   .+|++|+++|+|..|..+++.+ .|.+++|+.+.+|+||+|.+-.
T Consensus       173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs  229 (486)
T COG2509         173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS  229 (486)
T ss_pred             HHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence            345555543   5699999999999999988764 8889999999999999998865

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.78  E-value=1e-05  Score=70.74  Aligned_cols=69  Identities=20%  Similarity=0.280  Sum_probs=49.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC--ChhHHHHHHHcCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK--NYHTVNFTKLLNL   98 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~--~~~~~~~~~~lgl   98 (487)
                      ..||+|||||-+||+|||..++..   ...+|.|+|++-.+||-++          +|++.|...  ..+..-|++++|+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~r---PdlkvaIIE~SVaPGGGaW----------LGGQLFSAMvvRKPAhLFL~Eigv  142 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNR---PDLKVAIIESSVAPGGGAW----------LGGQLFSAMVVRKPAHLFLQEIGV  142 (328)
T ss_pred             ccceEEECCCccccceeeeeeccC---CCceEEEEEeeecCCCccc----------ccchhhhhhhhcChHHHHHHHhCC
Confidence            358999999999999999999633   6789999999988888665          444443321  1222357777776


Q ss_pred             CCCC
Q 043512           99 KPKD  102 (487)
Q Consensus        99 ~~~~  102 (487)
                      .-++
T Consensus       143 pYed  146 (328)
T KOG2960|consen  143 PYED  146 (328)
T ss_pred             Cccc
Confidence            5433

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.75  E-value=5.7e-05  Score=57.32  Aligned_cols=34  Identities=29%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +|+|||||+.|+-+|..|++     .|.+|+|+|+++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~-----~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAE-----LGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-----TTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHH-----hCcEEEEEeccchh
Confidence            58999999999999999999     99999999998763

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.73  E-value=0.00038  Score=70.31  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=38.0

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|.. ++.+.|.+.+|+++.+|.||++++...
T Consensus       197 ~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~p  241 (396)
T PRK09754        197 QQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISA  241 (396)
T ss_pred             HHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCCh
Confidence            356899999999999976 556678888898999999999998754

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.72  E-value=3.4e-05  Score=79.38  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=34.5

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +|+|||||++|++||..|++     .|.+|+|+|++ .+||.|-
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~-----~g~~V~lie~~-~~GG~c~   39 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ-----NGKNVTLIDEA-DLGGTCL   39 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh-----CCCcEEEEECC-cccccCC
Confidence            79999999999999999999     99999999996 4777654

>PRK13984 putative oxidoreductase; Provisional

Probab=97.71  E-value=5.6e-05  Score=80.63  Aligned_cols=43  Identities=33%  Similarity=0.461  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...++|+|||||++|+++|..|++     .|++|+|+|+.+.+||...
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~-----~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT-----MGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCceEe
Confidence            456789999999999999999999     9999999999999998664

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=97.70  E-value=0.00047  Score=69.15  Aligned_cols=46  Identities=15%  Similarity=0.179  Sum_probs=39.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++++++++|++|..+++.+.|.+.+|+++.+|.||+|++...
T Consensus       194 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p  239 (377)
T PRK04965        194 TEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRP  239 (377)
T ss_pred             HhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCc
Confidence            4568899999999999887777788888998999999999998754

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.67  E-value=6.8e-05  Score=71.55  Aligned_cols=48  Identities=31%  Similarity=0.387  Sum_probs=41.7

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      .+...++|+|||+|+||..+|+.|.+.+   .+..|+|+|+.+.++|-.+.
T Consensus        16 ~qs~~p~vcIVGsGPAGfYtA~~LLk~~---~~~~Vdi~Ek~PvPFGLvRy   63 (468)
T KOG1800|consen   16 TQSSTPRVCIVGSGPAGFYTAQHLLKRH---PNAHVDIFEKLPVPFGLVRY   63 (468)
T ss_pred             hccCCceEEEECCCchHHHHHHHHHhcC---CCCeeEeeecCCcccceeee
Confidence            4555669999999999999999999843   67999999999999998774

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.67  E-value=4.9e-05  Score=78.66  Aligned_cols=37  Identities=24%  Similarity=0.162  Sum_probs=35.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +||+|||+|++|+++|+.|++     +|++|+|+|+....||
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~-----~g~~v~~~e~~~~~~~   37 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD-----AGLKVAMVEIGAADSF   37 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH-----CCCeEEEEeccCccCC
Confidence            599999999999999999999     9999999999998886

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.66  E-value=4.4e-05  Score=83.34  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=31.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~   60 (487)
                      ++|+|||||++||++|..|++     .  |++|+|+||+..
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~-----~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKL-----LDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----hCCCCeEEEEecCCC
Confidence            479999999999999999999     7  899999999875

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.64  E-value=5.7e-05  Score=78.11  Aligned_cols=52  Identities=8%  Similarity=0.004  Sum_probs=39.5

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~~~  310 (487)
                      .+...+++.|++|++++.|++|...++++.|+..+|   +++.+|.||++++...
T Consensus       225 ~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~p  279 (484)
T TIGR01438       225 KVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDA  279 (484)
T ss_pred             HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCc
Confidence            334445567999999999999987666666665554   3799999999998753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.64  E-value=6e-05  Score=77.73  Aligned_cols=53  Identities=11%  Similarity=0.098  Sum_probs=43.2

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+...+++.|++++++++|++|..+++++.|.+.+|+++++|.||++++...
T Consensus       222 ~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~p  274 (466)
T PRK07845        222 EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVP  274 (466)
T ss_pred             HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCc
Confidence            34445556679999999999999877777778777888999999999988754

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.61  E-value=0.00011  Score=72.05  Aligned_cols=52  Identities=17%  Similarity=0.219  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCC----EEEEEEc----cCceEecCEEEEccCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLRE----YYELNST----KGNSYTCQITVVATPL  308 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~----~v~V~~~----~G~~~~ad~VV~a~~~  308 (487)
                      .+.++-.+++++..++++++|++|....+    .+.|.+.    +++++.|+.||++++.
T Consensus        98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~  157 (341)
T PF13434_consen   98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG  157 (341)
T ss_dssp             HHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----
T ss_pred             HHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence            34444455566656899999999998654    3688773    3468999999999983

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.61  E-value=0.00075  Score=67.17  Aligned_cols=41  Identities=29%  Similarity=0.305  Sum_probs=33.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +++|+|||+|++|+..|.+|.+...  ....|.|+|+....|+
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~--~~~~Isi~e~~~~~G~   41 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPR--PSGLISIFEPRPNFGQ   41 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCC--CCCceEEeccccccCC
Confidence            3689999999999999999998552  1223999999988764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.61  E-value=7.1e-05  Score=70.14  Aligned_cols=45  Identities=9%  Similarity=-0.023  Sum_probs=37.0

Q ss_pred             hcCCeEEeCCceEEEEEeCCEE-EEEEccCc--eEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYY-ELNSTKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..|+.+..+-+|.+....++++ .|-|.++.  .++||..|+|++...
T Consensus       270 ~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsff  317 (421)
T COG3075         270 QLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFF  317 (421)
T ss_pred             HcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccc
Confidence            4699999999999999999988 67777764  478899999888654

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.60  E-value=0.00077  Score=69.58  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+.+|..|++     .|.+|+|+|+.++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~  204 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFAS-----LGSKVTVIEMLDR  204 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcCCC
Confidence            3689999999999999999999     9999999999765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.0023  Score=61.81  Aligned_cols=113  Identities=18%  Similarity=0.218  Sum_probs=71.4

Q ss_pred             hhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHH---HHHhhhcC-CCC-ceEeecchHHHHHHHHHh---c
Q 043512          196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLA---GAVSLAGS-GGG-LWAVEGGNWQMAAGLINR---S  267 (487)
Q Consensus       196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~g-~~~~~gG~~~l~~~l~~~---~  267 (487)
                      ...+++.+||+..++.+.+..-+..+..-..+.+...+.++.   .++...+. +.. ..+|.-|-+.+++.+.+.   .
T Consensus       220 ~~e~~F~EyL~~~rltp~lqs~vl~aIaM~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlcAVf  299 (547)
T KOG4405|consen  220 FRERPFSEYLKTMRLTPKLQSIVLHAIAMLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLCAVF  299 (547)
T ss_pred             hhcCcHHHHHHhcCCChhhHHHHHHHHHhcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHHHHh
Confidence            446789999999999887664444333322222221122222   22222232 222 347888888888887664   4


Q ss_pred             CCeEEeCCceEEEEEeCCEEE---EEEccCceEecCEEEEccCC
Q 043512          268 DVALHLHEEIESISYLREYYE---LNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~---V~~~~G~~~~ad~VV~a~~~  308 (487)
                      |+-.-++.+|+.|..+.+...   +....|+++.++++|+.-..
T Consensus       300 GgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~~y  343 (547)
T KOG4405|consen  300 GGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSPSY  343 (547)
T ss_pred             cceEEeccchhheeecccccchhhhHhhhcchhcceeeeecCcc
Confidence            888889999999998765442   22356889999999988655

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.59  E-value=0.0008  Score=69.46  Aligned_cols=36  Identities=17%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~  207 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYAS-----LGAEVTIVEALPRI  207 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCCc
Confidence            3689999999999999999999     99999999998764

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.52  E-value=0.00011  Score=76.62  Aligned_cols=41  Identities=20%  Similarity=0.177  Sum_probs=36.8

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ...++||+|||||.|||.||..+++     +|.+|+|+||....+|
T Consensus         3 ~~~~~DvvVIG~G~AGl~AAi~aa~-----~g~~V~l~~K~~~~rg   43 (562)
T COG1053           3 TIHEFDVVVIGGGGAGLRAAIEAAE-----AGLKVALLSKAPPKRG   43 (562)
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHh-----cCCcEEEEEccccCCC
Confidence            3457899999999999999999999     9999999999876654

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.49  E-value=0.00014  Score=69.52  Aligned_cols=42  Identities=29%  Similarity=0.400  Sum_probs=39.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||+|++|-.||...++     .|.+.+.+|+++.+||-|-
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ-----lGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ-----LGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH-----hcceeEEEeccCccCceee
Confidence            57999999999999999999999     9999999999999999775

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.46  E-value=0.0014  Score=67.06  Aligned_cols=36  Identities=17%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+.+|..|++     .|.+|+|+|+.+++
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~~  192 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNK-----LGSKVTVLDAASTI  192 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCcc
Confidence            4579999999999999999999     99999999998764

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.45  E-value=0.00058  Score=68.63  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .+||||||||.||+-||+..++     -|.+++++--+
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaAR-----mG~ktlLlT~~   36 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAAR-----MGAKTLLLTLN   36 (621)
T ss_pred             CCceEEECCCccchHHHHhhhc-----cCCeEEEEEcC
Confidence            4899999999999999999999     99999998654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.44  E-value=0.0016  Score=67.21  Aligned_cols=36  Identities=14%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~  210 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAA-----LGVKVTLINTRDRL  210 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCCc
Confidence            4689999999999999999999     99999999997653

>PRK02106 choline dehydrogenase; Validated

Probab=97.42  E-value=0.00017  Score=76.29  Aligned_cols=36  Identities=33%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+||||||.+|+.+|.+|++.    +|++|+|||+.+
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~----~g~~VlvlEaG~   39 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSED----PDVSVLLLEAGG   39 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhC----CCCeEEEecCCC
Confidence            458999999999999999999993    599999999975

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.41  E-value=0.00016  Score=75.56  Aligned_cols=38  Identities=34%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....++|+||||+|.+|.+.|.+|++     +|++|+|||+..
T Consensus         3 ~~~~~~D~vIVGsG~aG~~lA~rLs~-----~g~~VllLEaG~   40 (542)
T COG2303           3 EMKMEYDYVIVGSGSAGSVLAARLSD-----AGLSVLVLEAGG   40 (542)
T ss_pred             cccCCCCEEEECCCchhHHHHHHhcC-----CCCeEEEEeCCC
Confidence            34567999999999999999999998     999999999863

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.39  E-value=0.0016  Score=71.47  Aligned_cols=47  Identities=13%  Similarity=0.219  Sum_probs=39.3

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|++++.|++|..++....|++.+|+++.+|.||++++...
T Consensus       192 l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~P  238 (785)
T TIGR02374       192 LEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRP  238 (785)
T ss_pred             HHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            34668999999999999865555578888999999999999999764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.34  E-value=0.00011  Score=67.67  Aligned_cols=47  Identities=28%  Similarity=0.400  Sum_probs=35.8

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCccc
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGG   63 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GG   63 (487)
                      .....++|+||||||.|.++||+|+++..-.+| ..|+++|+....||
T Consensus         6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g   53 (380)
T KOG2852|consen    6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG   53 (380)
T ss_pred             ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence            344568999999999999999999993210011 89999999876655

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.34  E-value=0.0025  Score=65.37  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+|+|+.++
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~-----~G~~Vtli~~~~~  200 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRG-----LGVQVTLIYRGEL  200 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEeCCC
Confidence            3579999999999999999999     9999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.33  E-value=0.0028  Score=65.41  Aligned_cols=35  Identities=17%  Similarity=0.383  Sum_probs=32.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+++|||+|..|+-.|..|++     .|.+|+++|+.+++
T Consensus       178 ~~vvVIGgG~ig~E~A~~l~~-----~g~~Vtli~~~~~~  212 (466)
T PRK07845        178 EHLIVVGSGVTGAEFASAYTE-----LGVKVTLVSSRDRV  212 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCcC
Confidence            579999999999999999999     99999999987653

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.31  E-value=0.00027  Score=72.31  Aligned_cols=38  Identities=24%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ++|+|||||++|++||..|+++.   .+.+|+|+|+++.++
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~---~~~~I~li~~~~~~~   39 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLD---KESDIIIFEKDRDMS   39 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhC---CCCCEEEEECCCCcc
Confidence            58999999999999999999843   478999999987654

>PRK07846 mycothione reductase; Reviewed

Probab=97.31  E-value=0.00026  Score=72.68  Aligned_cols=44  Identities=16%  Similarity=0.116  Sum_probs=38.2

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .|++++++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus       219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence            47999999999999877777778887888999999999998764

>PLN02507 glutathione reductase

Probab=97.30  E-value=0.0036  Score=65.06  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~-----~G~~Vtli~~~~~  237 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRG-----MGATVDLFFRKEL  237 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEecCC
Confidence            3589999999999999999999     9999999998764

>TIGR03452 mycothione_red mycothione reductase

Probab=97.29  E-value=0.00031  Score=72.14  Aligned_cols=44  Identities=16%  Similarity=0.173  Sum_probs=38.1

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .|++++++++|++|..+++++.|.+.+|+++.+|.||++++...
T Consensus       222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCc
Confidence            48999999999999887777777777888899999999998654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.28  E-value=0.0003  Score=72.20  Aligned_cols=53  Identities=23%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++...+.+.++ ++.+|.||+|++...
T Consensus       194 ~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p  246 (444)
T PRK09564        194 TDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKP  246 (444)
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCc
Confidence            33444445667999999999999975444345666554 799999999999753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.27  E-value=0.0032  Score=65.12  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||.+|+-+|..|++     .|.+|+|+|+.++
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~-----~g~~Vtli~~~~~  214 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLAD-----FGVEVTVVEAADR  214 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEEecCc
Confidence            3689999999999999999999     9999999998764

>PRK06370 mercuric reductase; Validated

Probab=97.27  E-value=0.0034  Score=64.78  Aligned_cols=35  Identities=26%  Similarity=0.472  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.++
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~-----~G~~Vtli~~~~~  205 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRR-----FGSEVTVIERGPR  205 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCC
Confidence            4689999999999999999999     9999999998765

>PRK06116 glutathione reductase; Validated

Probab=97.26  E-value=0.0033  Score=64.61  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.++
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~  201 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNG-----LGSETHLFVRGDA  201 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCC
Confidence            4689999999999999999999     9999999998765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.25  E-value=0.0038  Score=63.37  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCc--eEecCEEEEccCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGN--SYTCQITVVATPLD  309 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~--~~~ad~VV~a~~~~  309 (487)
                      .|++++++++|++++..++++.|.+.+|+  ++++|.|++|++-.
T Consensus       227 ~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         227 GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence            57899999999999988777888887775  68899999999965

>TIGR01810 betA choline dehydrogenase

Probab=97.22  E-value=0.00028  Score=74.16  Aligned_cols=45  Identities=9%  Similarity=0.152  Sum_probs=34.9

Q ss_pred             hcCCeEEeCCceEEEEEeCCEE-EEEEccC-c---eEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYY-ELNSTKG-N---SYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G-~---~~~ad~VV~a~~~~~  310 (487)
                      +.+.+|+.+++|++|..+++++ +|++.++ .   .+.++.||+|++...
T Consensus       206 r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~  255 (532)
T TIGR01810       206 RPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAIN  255 (532)
T ss_pred             CCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCC
Confidence            4579999999999999887765 6665433 2   358999999999854

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.22  E-value=0.0037  Score=64.23  Aligned_cols=46  Identities=9%  Similarity=0.024  Sum_probs=37.0

Q ss_pred             HhcCCeEEeCCceEEEEEeCCE-EEEEEccC-ceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREY-YELNSTKG-NSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G-~~~~ad~VV~a~~~~~  310 (487)
                      ++.|+++++++.|++|..++++ +.|.+.+| +.+.+|.||++++...
T Consensus       218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~p  265 (450)
T TIGR01421       218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKP  265 (450)
T ss_pred             HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCc
Confidence            3568899999999999876443 66777777 5799999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.20  E-value=0.0053  Score=63.41  Aligned_cols=46  Identities=13%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|..+++++.+.+.  +|  +++.+|.||++++...
T Consensus       224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p  273 (466)
T PRK07818        224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP  273 (466)
T ss_pred             HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence            3568999999999999877666655543  56  3699999999998753

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.12  E-value=0.0053  Score=63.56  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=35.8

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEcc--C--ceEecCEEEEccCCCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTK--G--NSYTCQITVVATPLDE  310 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VV~a~~~~~  310 (487)
                      +.|++|+++++|++|..+++++.|...+  |  +.+.+|.||++++...
T Consensus       236 ~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p  284 (475)
T PRK06327        236 KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVP  284 (475)
T ss_pred             HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCcc
Confidence            4588999999999998877777666543  3  4699999999998764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.04  E-value=0.00072  Score=68.28  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~   61 (487)
                      +++|+|||||++|++||..|++     .|+  +|+|+++.+..
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~-----~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQ-----QGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHh-----hCCCCCEEEeCCCCCC
Confidence            4689999999999999999999     665  89999997654

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.95  E-value=0.011  Score=60.65  Aligned_cols=45  Identities=16%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++++++++|++|..+++++.|.+.+| ++.+|.||++++...
T Consensus       210 ~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~p  254 (441)
T PRK08010        210 RDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQP  254 (441)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCc
Confidence            456899999999999988777777777666 689999999988764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=96.94  E-value=0.0053  Score=58.83  Aligned_cols=46  Identities=24%  Similarity=0.366  Sum_probs=37.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT   67 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s   67 (487)
                      .+.+-|||+|+|||++|.+|-+..+ -.|.++-|+|.-+..||..-.
T Consensus        22 qKsaY~vG~GlAsLA~AvfLIRDg~-m~G~~IHilEelpl~GGSlDG   67 (587)
T COG4716          22 QKSAYIVGGGLASLAAAVFLIRDGQ-MDGKRIHILEELPLAGGSLDG   67 (587)
T ss_pred             cceeEEEccchHhhhheeEEEeccc-cCCceeEeeecCcccCCCCCC
Confidence            4678999999999999999987321 168899999999888987643

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.89  E-value=0.0014  Score=65.80  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +++|+|||||+||+++|..|++..   ...+|+|+++.+.
T Consensus         2 ~~~vvIiG~G~AG~~~a~~lr~~~---~~~~Itvi~~~~~   38 (377)
T PRK04965          2 SNGIVIIGSGFAARQLVKNIRKQD---AHIPITLITADSG   38 (377)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhC---cCCCEEEEeCCCC
Confidence            468999999999999999999843   5679999998763

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=96.87  E-value=0.0013  Score=67.08  Aligned_cols=49  Identities=12%  Similarity=0.178  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ...++..+++.|++|+++++|++|..  +  .|.+.+|+++.+|.||++++..
T Consensus       231 ~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~  279 (424)
T PTZ00318        231 RKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVG  279 (424)
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCC
Confidence            34444455677999999999999963  3  3567789899999999998854

>PLN02785 Protein HOTHEAD

Probab=96.86  E-value=0.0013  Score=69.40  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+||||||.+|+.+|.+|++     . .+|+|+|+..
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~-----~-~~VLllE~G~   87 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ-----N-FSVLLLERGG   87 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc-----C-CcEEEEecCC
Confidence            446999999999999999999998     5 8999999964

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=96.83  E-value=0.014  Score=60.44  Aligned_cols=39  Identities=18%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..++.+..  .|.+|+|+|+.+++
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~--~G~~Vtli~~~~~i  225 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKP--RGGKVTLCYRNNMI  225 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhcc--CCCeEEEEecCCcc
Confidence            4679999999999999987765221  59999999988763

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14727 putative mercuric reductase; Provisional

Probab=96.83  E-value=0.02  Score=59.43  Aligned_cols=45  Identities=7%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|..+++++.|.+.++ ++.+|.||++++...
T Consensus       239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~p  283 (479)
T PRK14727        239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHA  283 (479)
T ss_pred             HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCC
Confidence            356889999999999988777777777666 689999999999875

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.79  E-value=0.0021  Score=61.00  Aligned_cols=47  Identities=19%  Similarity=0.219  Sum_probs=41.1

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +......+|..|||||-+|+++|++.++     .|.+|.|+|..-++||-|-
T Consensus        14 ~a~~~k~fDylvIGgGSGGvasARrAa~-----~GAkv~l~E~~f~lGGTCV   60 (478)
T KOG0405|consen   14 MAADVKDFDYLVIGGGSGGVASARRAAS-----HGAKVALCELPFGLGGTCV   60 (478)
T ss_pred             ccccccccceEEEcCCcchhHHhHHHHh-----cCceEEEEecCCCcCceEE
Confidence            3444457899999999999999999999     9999999999878888774

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.74  E-value=0.0017  Score=65.73  Aligned_cols=40  Identities=20%  Similarity=0.370  Sum_probs=37.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+|+|||+|..|+-+|..|++     +|++|+++|+.+++||+.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~-----~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAK-----RGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEcccccchhh
Confidence            4789999999999999999999     999999999999987644

>PRK14694 putative mercuric reductase; Provisional

Probab=96.72  E-value=0.022  Score=58.84  Aligned_cols=45  Identities=16%  Similarity=0.263  Sum_probs=36.7

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++++++++|++|..+++.+.+.+.++ ++.+|.||++++...
T Consensus       229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p  273 (468)
T PRK14694        229 RREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP  273 (468)
T ss_pred             HhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence            355889999999999987776666766555 799999999998764

>PRK13748 putative mercuric reductase; Provisional

Probab=96.66  E-value=0.024  Score=60.09  Aligned_cols=45  Identities=13%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|..+++.+.+.+.++ ++.+|.||++++...
T Consensus       321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p  365 (561)
T PRK13748        321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAP  365 (561)
T ss_pred             HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCc
Confidence            356889999999999987777777777666 799999999999764

>PTZ00052 thioredoxin reductase; Provisional

Probab=96.65  E-value=0.014  Score=60.80  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .+|+|||||..|+-.|..|++     .|.+|+|+++.
T Consensus       183 ~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~  214 (499)
T PTZ00052        183 GKTLIVGASYIGLETAGFLNE-----LGFDVTVAVRS  214 (499)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcC
Confidence            479999999999999999999     99999999863

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.002  Score=60.63  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...|.|||||++|.-|||.+++     +|.+|.++|-++.
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~-----~Gv~V~L~EMRp~   37 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAK-----RGVPVILYEMRPV   37 (439)
T ss_pred             CCceEEEcccccccHHHHHHHH-----cCCcEEEEEcccc
Confidence            3469999999999999999999     9999999998764

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=96.53  E-value=0.0056  Score=60.15  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCC
Q 043512          248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      |.|.+.+|.   .+++..|++   +.|++|+.+++|++|..+++++ .|.+.+| ++.||.||+|++.+...
T Consensus       125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE  195 (337)
T ss_pred             EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence            455555553   566666655   4599999999999999888876 6788777 89999999999998754

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.49  E-value=0.0028  Score=63.23  Aligned_cols=51  Identities=14%  Similarity=0.136  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ........+++.|++++++++|++|..  +  .|.+.+|+++.+|.||++++...
T Consensus       193 ~~~~~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p  243 (364)
T TIGR03169       193 VRRLVLRLLARRGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA  243 (364)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence            344555666778999999999999853  2  46677888999999999998653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.48  E-value=0.039  Score=57.19  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .+++|||||..|+-+|..|++     .|.+|+|+++.
T Consensus       181 ~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~  212 (484)
T TIGR01438       181 GKTLVVGASYVALECAGFLAG-----IGLDVTVMVRS  212 (484)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-----hCCcEEEEEec
Confidence            579999999999999999999     99999999863

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.0041  Score=58.73  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=33.3

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ...+-.+|.||||||-+||+||...+.     -|.+|.++|-
T Consensus        14 ~~~sydyDLIviGgGSgGLacaKeAa~-----~G~kV~~lDf   50 (503)
T KOG4716|consen   14 LFSSYDYDLIVIGGGSGGLACAKEAAD-----LGAKVACLDF   50 (503)
T ss_pred             hcccCCccEEEEcCCcchhhHHHHHHh-----cCCcEEEEee
Confidence            345567899999999999999999999     9999999986

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.36  E-value=0.0044  Score=53.66  Aligned_cols=32  Identities=25%  Similarity=0.493  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|+|||||-.|.+.|..|++     +|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~-----~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLAD-----NGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-----CTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHH-----cCCEEEEEeccH
Confidence            58999999999999999999     999999998863

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=96.26  E-value=0.005  Score=63.58  Aligned_cols=40  Identities=23%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ....+|.||||||-||+..|.+|++.    ...+|+|+|+...+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn----~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN----PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC----CCceEEEEecCCCC
Confidence            44579999999999999999999983    45899999997653

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=95.94  E-value=0.011  Score=57.50  Aligned_cols=42  Identities=24%  Similarity=0.292  Sum_probs=33.2

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.+..+||+|||||+.|++.|..|.....- +.++|+++|..+
T Consensus        32 ~~~~~~dVvIvGgGpvg~aLAa~l~snp~~-~~~kv~Lld~~~   73 (481)
T KOG3855|consen   32 TDTAKYDVVIVGGGPVGLALAAALGSNPPF-QDKKVLLLDAGD   73 (481)
T ss_pred             CCcccCCEEEECCchHHHHHHHHhccCCcc-chheeeEEeccc
Confidence            344478999999999999999999862110 468999999974

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=95.90  E-value=0.018  Score=57.02  Aligned_cols=61  Identities=11%  Similarity=0.070  Sum_probs=46.3

Q ss_pred             CCceEe-ecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccC-ceEecCEEEEccCCC
Q 043512          247 GGLWAV-EGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKG-NSYTCQITVVATPLD  309 (487)
Q Consensus       247 ~g~~~~-~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~a~~~~  309 (487)
                      .|..|| ..-.+.++++|..   +.|++|+++++|++|  +++++.|.+.++ ..++||+||+|++-.
T Consensus        75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~  140 (376)
T TIGR03862        75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGA  140 (376)
T ss_pred             CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCc
Confidence            455566 4456778888865   469999999999999  445577776543 469999999999974

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.89  E-value=0.011  Score=52.32  Aligned_cols=33  Identities=21%  Similarity=0.447  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +|+|||||..|..-|..++.     .|++|+++|.+..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~-----~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFAR-----AGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHH-----TTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHh-----CCCcEEEEECChH
Confidence            48999999999999999999     9999999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.89  E-value=0.0037  Score=62.68  Aligned_cols=40  Identities=25%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||..|.-||.-.+-     +|.+|.++|+.|..-|-.
T Consensus        67 ~fDVLIIGGGAtGaGcALDA~T-----RGLktaLVE~~DF~SGTS  106 (680)
T KOG0042|consen   67 EFDVLIIGGGATGAGCALDAAT-----RGLKTALVEAGDFASGTS  106 (680)
T ss_pred             cccEEEECCCccCcceeehhhc-----ccceeEEEecccccCCcc
Confidence            4899999999999999999999     999999999999755543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.88  E-value=0.0085  Score=65.83  Aligned_cols=37  Identities=14%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      |+|||||++|+++|..|+++..  .+++|+|+|+.++++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~--~~~~Itvi~~e~~~~   37 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNR--HMFEITIFGEEPHPN   37 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCC--CCCeEEEEeCCCCCC
Confidence            6899999999999999988432  468999999998865

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.69  E-value=0.015  Score=60.44  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||+|.+|+++|..|++     .|++|+++|+++.
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~-----~G~~V~~~d~~~~   50 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLE-----LGARVTVVDDGDD   50 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCch
Confidence            4689999999999999999999     9999999998653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.61  E-value=0.015  Score=51.80  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|.|||.|..||.+|..|++     .|++|+.+|.+..
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~-----~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAE-----KGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHH-----TTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHh-----CCCEEEEEeCChH
Confidence            579999999999999999999     9999999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.51  E-value=0.0086  Score=56.90  Aligned_cols=42  Identities=19%  Similarity=0.293  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ....+||+|||||++|.+||.+.++     +|.+.-|+-  +|.||..-
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaAR-----KGiRTGl~a--erfGGQvl  249 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAAR-----KGIRTGLVA--ERFGGQVL  249 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHh-----hcchhhhhh--hhhCCeec
Confidence            3456899999999999999999999     999887653  35777543

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.50  E-value=0.012  Score=54.77  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=28.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCC--CCCCeEEEEec
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSK--NWHPRILMFER   57 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~--~~G~~V~VlE~   57 (487)
                      +.++|+|||+|+.||++|..+.++...  ..-.+|+|++-
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            467999999999999999888873210  03478888864

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.47  E-value=0.019  Score=55.75  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     +|++|++++++.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~-----~G~~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFAR-----AGHEVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHH-----CCCeeEEEeCCH
Confidence            479999999999999999999     999999999875

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.35  E-value=0.02  Score=59.03  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +|.|||+|.+|+++|..|++     .|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~-----~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKA-----QGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHH-----CCCEEEEECCCCch
Confidence            58999999999999999999     99999999987653

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.28  E-value=0.03  Score=54.37  Aligned_cols=34  Identities=21%  Similarity=0.207  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -++|+|||+|..|..-|..++.     .|++|+++|..+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~-----aG~~V~l~D~~~   40 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALA-----HGLDVVAWDPAP   40 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            3579999999999999999999     999999999864

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.14  E-value=0.016  Score=53.08  Aligned_cols=69  Identities=22%  Similarity=0.227  Sum_probs=44.0

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--CeEecccceeEecCChhHHHHHHH
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQTFEAGASILHPKNYHTVNFTKL   95 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~~   95 (487)
                      .+||||||||.+||-.|+.++   +..+|+++-+++.+-.-..-...+  +..||+--+-.++..+..+.+++.
T Consensus         2 fivvgggiagvscaeqla~~~---psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~   72 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLE---PSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND   72 (334)
T ss_pred             eEEEcCccccccHHHHHHhhC---CCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHh
Confidence            689999999999999999977   778999998876542211111111  234666555444444333355554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.07  E-value=0.036  Score=47.45  Aligned_cols=31  Identities=32%  Similarity=0.349  Sum_probs=28.9

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      |+|||+|..|+..|++|++     .|++|+++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~-----~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-----AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-----TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH-----CCCceEEEEccc
Confidence            7899999999999999999     999999998754

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.03  E-value=0.032  Score=53.51  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|+|||+|..|..-|..|++     .|++|+++|.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~-----~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCAR-----AGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHh-----CCCEEEEEECCHH
Confidence            479999999999999999999     9999999998754

>TIGR02053 MerA mercuric reductase

Probab=95.00  E-value=0.03  Score=57.76  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+|+|+.++
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~  200 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFAR-----LGSEVTILQRSDR  200 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcCCc
Confidence            3689999999999999999999     9999999998765

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07846 mycothione reductase; Reviewed

Probab=94.99  E-value=0.034  Score=57.11  Aligned_cols=36  Identities=22%  Similarity=0.469  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~-----~G~~Vtli~~~~~l  201 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSA-----LGVRVTVVNRSGRL  201 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCcc
Confidence            3689999999999999999999     99999999998764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.97  E-value=0.035  Score=57.22  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.++
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~-----~g~~Vtli~~~~~  204 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSR-----LGTKVTIVEMAPQ  204 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----cCCeEEEEecCCC
Confidence            3689999999999999999999     9999999998765

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.91  E-value=0.037  Score=57.13  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~-----~G~~Vtlie~~~~  208 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRR-----LGAQVTVVEYLDR  208 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEeCCCC
Confidence            4689999999999999999999     9999999998765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.90  E-value=0.035  Score=57.37  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~-----~G~~Vtlv~~~~~  208 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHR-----LGSEVDVVEMFDQ  208 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----cCCCEEEEecCCC
Confidence            689999999999999999999     9999999999865

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.83  E-value=0.035  Score=53.28  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|..|++     +|++|++++.+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~-----~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAF-----HGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence            579999999999999999999     999999999864

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.70  E-value=0.05  Score=52.98  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|..|.+.|..|++     .|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~-----~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLAR-----AGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHH-----CCCeEEEEEeCC
Confidence            4689999999999999999999     999999998853

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.68  E-value=0.041  Score=56.30  Aligned_cols=36  Identities=11%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.+++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtli~~~~~l  183 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYE-----RGLHPTLIHRSDKI  183 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCcEEEEeccccc
Confidence            3689999999999999999999     99999999998764

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.66  E-value=0.056  Score=48.34  Aligned_cols=42  Identities=33%  Similarity=0.514  Sum_probs=35.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC---C-CccceeEEE
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN---G-VVGGRMATV   68 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~---~-~~GGr~~s~   68 (487)
                      -+|+|||+|+++-+||.++++     +..+-++||.-   + .+||...|.
T Consensus         9 e~v~IiGSGPAa~tAAiYaar-----aelkPllfEG~~~~~i~pGGQLtTT   54 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAAR-----AELKPLLFEGMMANGIAPGGQLTTT   54 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhh-----cccCceEEeeeeccCcCCCceeeee
Confidence            479999999999999999999     99999999962   2 347777664

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=94.65  E-value=0.046  Score=56.37  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-.|..|++     .|.+|+|+|+.+++
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~-----~g~~Vtli~~~~~~  204 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSR-----LGVKVTVFERGDRI  204 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCCc
Confidence            4689999999999999999999     99999999998653

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=94.65  E-value=0.046  Score=55.78  Aligned_cols=35  Identities=29%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++++.+.
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~  171 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRE-----RGKNVTLIHRSER  171 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCcEEEEECCcc
Confidence            3689999999999999999999     9999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.61  E-value=0.044  Score=52.67  Aligned_cols=33  Identities=12%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+|||+|..|.+.|..|++     +|++|+++++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~-----~G~~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAV-----SGFQTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHh-----CCCcEEEEeCCH
Confidence            469999999999999999999     999999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.54  E-value=0.05  Score=52.74  Aligned_cols=33  Identities=27%  Similarity=0.211  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|+|||+|..|...|++|++     .|.+|+++.|.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~-----~G~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLAR-----AGLPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHh-----CCCCeEEEEec
Confidence            4689999999999999999999     99999999985

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.49  E-value=0.048  Score=50.21  Aligned_cols=68  Identities=16%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      ++++|||+|--|.+.|..|.+     .|++|+++|+.+..   +..+.    .-+.+.+.+...... .+.+++.|+...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~-----~g~~Vv~Id~d~~~---~~~~~----~~~~~~~~v~gd~t~-~~~L~~agi~~a   67 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSE-----EGHNVVLIDRDEER---VEEFL----ADELDTHVVIGDATD-EDVLEEAGIDDA   67 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHh-----CCCceEEEEcCHHH---HHHHh----hhhcceEEEEecCCC-HHHHHhcCCCcC
Confidence            579999999999999999999     99999999997531   11000    012344444432221 267788887654


Q ss_pred             C
Q 043512          102 D  102 (487)
Q Consensus       102 ~  102 (487)
                      +
T Consensus        68 D   68 (225)
T COG0569          68 D   68 (225)
T ss_pred             C
Confidence            3

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.47  E-value=0.057  Score=52.02  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+|||+|..|.+.|..|++     +|++|++++++.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~-----~G~~V~l~d~~~   37 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCAL-----AGYDVLLNDVSA   37 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            579999999999999999999     999999999864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.45  E-value=0.051  Score=53.63  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|.|||+|..|.+.|..|++     +|++|++++++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~-----~G~~V~~~~r~   34 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAA-----AGADVTLIGRA   34 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHh-----cCCcEEEEecH
Confidence            4679999999999999999999     99999999874

>TIGR03452 mycothione_red mycothione reductase

Probab=94.39  E-value=0.055  Score=55.60  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+++|||||..|+-.|..|++     .|.+|+++|+.+++
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~-----~G~~Vtli~~~~~l  204 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSA-----LGTRVTIVNRSTKL  204 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-----CCCcEEEEEccCcc
Confidence            3689999999999999999999     99999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.31  E-value=0.073  Score=46.62  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|+|+|.+|..||..|.+     .|.+|+++|.+.
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~-----lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKG-----LGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHH-----TT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhH-----CCCEEEeccCCH
Confidence            34789999999999999999999     999999999753

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.26  E-value=0.063  Score=55.19  Aligned_cols=34  Identities=24%  Similarity=0.617  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|..|+++|..|++     .|++|+++|+..
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~-----~G~~V~~~d~~~   38 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKK-----LGAKVILTDEKE   38 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence            5789999999999999999999     999999999864

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.19  E-value=0.057  Score=51.98  Aligned_cols=33  Identities=15%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|.|||+|..|.+.|..|++     +|++|+++|+++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~-----~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFAR-----TGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence            569999999999999999999     999999999865

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.18  E-value=0.062  Score=51.98  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++|+|||+|..|...|..|++     .|++|+++.++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~-----~g~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQ-----AGHDVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECC
Confidence            369999999999999999999     99999999984

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.16  E-value=0.079  Score=51.43  Aligned_cols=35  Identities=31%  Similarity=0.477  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.++|.|||+|..|.+.|..|++     .|++|+++.++.
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~-----~G~~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASA-----NGHRVRVWSRRS   37 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHH-----CCCEEEEEeCCC
Confidence            45679999999999999999999     999999999864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.09  E-value=0.09  Score=45.86  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCh-hHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGI-GGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGi-aGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+|- +|..+|..|.+     .|.+|+|..++
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~-----~g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLN-----RNATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhh-----CCCEEEEEECC
Confidence            468899999995 79999999999     99999999975

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.07  E-value=0.075  Score=50.03  Aligned_cols=45  Identities=22%  Similarity=0.443  Sum_probs=38.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC--------CCccceeEEEee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN--------GVVGGRMATVTI   70 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~--------~~~GGr~~s~~~   70 (487)
                      ..+|+|||+|..|.-+|..+..     -|.+|+++|.+        +..|||..+...
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~g-----lgA~Vtild~n~~rl~~ldd~f~~rv~~~~s  220 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIG-----LGADVTILDLNIDRLRQLDDLFGGRVHTLYS  220 (371)
T ss_pred             CccEEEECCccccchHHHHHhc-----cCCeeEEEecCHHHHhhhhHhhCceeEEEEc
Confidence            4589999999999999999999     89999999998        345888776543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.04  E-value=0.066  Score=51.88  Aligned_cols=31  Identities=16%  Similarity=0.316  Sum_probs=29.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ++|+|||+|..|.+.|..|++     .|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~-----~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLE-----AGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----CCCceEEEec
Confidence            369999999999999999999     9999999987

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.01  E-value=0.073  Score=55.72  Aligned_cols=35  Identities=23%  Similarity=0.214  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+.
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~-----~g~~Vtli~~~~~  386 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAG-----IVRHVTVLEFADE  386 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHh-----cCcEEEEEEeCCc
Confidence            4689999999999999999999     8999999987653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=94.00  E-value=0.06  Score=53.51  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ...+||||||||.||.-||...++     -|.+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR-----~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAAR-----LGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHh-----cCCceEEeecc
Confidence            557899999999999999999999     89888888653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=93.98  E-value=0.077  Score=54.45  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++++.+++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~~  184 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKH-----LGKNVRIIQLEDRI  184 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCcEEEEeCCccc
Confidence            4689999999999999999999     99999999987754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.89  E-value=0.093  Score=51.46  Aligned_cols=34  Identities=21%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~-----~G~~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAAS-----KGVPVRLWARRP   37 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            4579999999999999999999     999999999853

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=93.87  E-value=0.081  Score=56.64  Aligned_cols=35  Identities=20%  Similarity=0.313  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~-----~G~eVTLIe~~~~  346 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTA-----LGSEVVSFEYSPQ  346 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHh-----CCCeEEEEeccCc
Confidence            3579999999999999999999     9999999999876

>PTZ00058 glutathione reductase; Provisional

Probab=93.82  E-value=0.079  Score=55.76  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~-----~G~~Vtli~~~~~  271 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNR-----LGAESYIFARGNR  271 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-----cCCcEEEEEeccc
Confidence            4689999999999999999999     9999999998754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.81  E-value=0.11  Score=47.17  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||||-.|...+..|.+     .|.+|+|+....
T Consensus         9 gk~vlVvGgG~va~rk~~~Ll~-----~ga~VtVvsp~~   42 (205)
T TIGR01470         9 GRAVLVVGGGDVALRKARLLLK-----AGAQLRVIAEEL   42 (205)
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-----CCCEEEEEcCCC
Confidence            4689999999999999999999     999999997753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.79  E-value=0.12  Score=43.46  Aligned_cols=34  Identities=24%  Similarity=0.366  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~   58 (487)
                      ...+|+|||||-+|-++++.|++     .|.+ |+|+-|+
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~-----~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAA-----LGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHH-----TTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHH-----cCCCEEEEEECC
Confidence            46789999999999999999999     8976 9999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=93.79  E-value=0.1  Score=50.34  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|.|||+|..|.+.|..|++     .|++|+++|++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~-----~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAA-----AGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----cCCeEEEEeCCH
Confidence            569999999999999999999     999999999864

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=93.69  E-value=0.084  Score=47.26  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.+.|.|||||..|.-.|...+.     .|+.|.+++++.
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~-----sg~~V~l~d~~~   44 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAAT-----SGLNVWLVDANE   44 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHh-----cCCceEEecCCH
Confidence            4456789999999999999999999     999999999874

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.62  E-value=0.091  Score=50.30  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+|||+|..|.+.|..|++     .|++|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~-----~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAV-----AGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHH-----CCCceEEEeCCH
Confidence            469999999999999999999     999999999764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.58  E-value=0.12  Score=53.83  Aligned_cols=36  Identities=25%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .-.+|.|||+|..|...|..|++     +|++|+++|++..
T Consensus         6 ~i~~V~VIGaG~MG~gIA~~la~-----aG~~V~l~D~~~e   41 (507)
T PRK08268          6 SIATVAVIGAGAMGAGIAQVAAQ-----AGHTVLLYDARAG   41 (507)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCHH
Confidence            34679999999999999999999     9999999998654

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=93.55  E-value=0.27  Score=51.52  Aligned_cols=57  Identities=7%  Similarity=0.092  Sum_probs=43.2

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cC--ceEecCEEEEccCCCCCCe
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KG--NSYTCQITVVATPLDELNL  313 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G--~~~~ad~VV~a~~~~~~~~  313 (487)
                      ..++.++++   +.|++|+.+++|++|..+++++ +|++.   +|  ..+.|+.||.|+++|...+
T Consensus       128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l  193 (516)
T TIGR03377       128 FRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRI  193 (516)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHH
Confidence            455555544   4699999999999999888765 45542   34  3689999999999997543

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.55  E-value=0.12  Score=50.35  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~-----~g~~V~~~d~~~   37 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFAR-----KGLQVVLIDVME   37 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            3579999999999999999999     999999999764

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.52  E-value=0.72  Score=45.39  Aligned_cols=38  Identities=26%  Similarity=0.170  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ....|+|.||-|+.-|+.|..|...    .+.+++.+||...
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~----~~~~~lFLerkp~   40 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEH----SGLKSLFLERKPD   40 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccc----cCcceEEEecCCC
Confidence            3568999999999999999999983    3488999999753

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.43  E-value=0.074  Score=42.32  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||||-.|..-+..|.+     .|.+|+|+...
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~-----~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE-----AGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC-----CTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEECCc
Confidence            45789999999999999999999     99999999876

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.35  E-value=1  Score=47.74  Aligned_cols=54  Identities=11%  Similarity=-0.008  Sum_probs=40.2

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEe-CCEE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYL-REYY-ELNS---TKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~-~~~v-~V~~---~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+...|.+   +.|++|+.++.++++..+ ++++ +|..   .+|+  .+.|+.||+|++-..
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  189 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAG  189 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence            456666655   358999999999999985 5555 5543   3564  578999999999764

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.34  E-value=0.12  Score=50.15  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=29.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.++|+.|+.     .|  .+|.++|++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~-----~g~~~ev~l~D~~~   35 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLL-----RGLASEIVLVDINK   35 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----cCCCCEEEEEECCc
Confidence            369999999999999999999     88  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.32  E-value=0.11  Score=57.56  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=32.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+++|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       146 k~vvVIGgG~iGlE~A~~L~~-----~G~~VtvVe~~~~l  180 (847)
T PRK14989        146 KRGAVVGGGLLGLEAAGALKN-----LGVETHVIEFAPML  180 (847)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-----cCCeEEEEeccccc
Confidence            579999999999999999999     99999999998764

>PRK10262 thioredoxin reductase; Provisional

Probab=93.31  E-value=0.12  Score=50.37  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|..|+-+|..|++     .|.+|+++++.+
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~-----~~~~Vtlv~~~~  179 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSN-----IASEVHLIHRRD  179 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----hCCEEEEEEECC
Confidence            4689999999999999999999     999999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.25  E-value=0.15  Score=46.10  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||||-.|...|..|.+     .|.+|+|+++.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~-----~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLK-----YGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEcCC
Confidence            35789999999999999999999     99999999864

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=93.23  E-value=0.12  Score=54.16  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||||..|+-+|..|++     .|.+|+|+++.+.
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~-----~~~~Vtlv~~~~~  385 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAG-----IVKHVTVLEFAPE  385 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEEECcc
Confidence            4689999999999999999999     9999999987653

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.22  E-value=0.13  Score=52.88  Aligned_cols=35  Identities=17%  Similarity=0.183  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||||..|+-+|..|++     .|.+|+|+++.+
T Consensus       271 ~gk~VvVIGgG~~a~d~A~~l~~-----~G~~Vtlv~~~~  305 (449)
T TIGR01316       271 AGKSVVVIGGGNTAVDSARTALR-----LGAEVHCLYRRT  305 (449)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----cCCEEEEEeecC
Confidence            34689999999999999999999     999999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.22  E-value=0.17  Score=50.00  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~   58 (487)
                      +++|+|||||-.|.++|+.|++     .| .+|+|-+|+
T Consensus         1 m~~ilviGaG~Vg~~va~~la~-----~~d~~V~iAdRs   34 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQ-----NGDGEVTIADRS   34 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHh-----CCCceEEEEeCC
Confidence            3689999999999999999999     78 899999997

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.17  E-value=0.16  Score=43.79  Aligned_cols=33  Identities=21%  Similarity=0.162  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ..++|+|||||-.|..-|..|.+     .|.+|+|+..
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~-----~ga~V~VIsp   44 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKD-----TGAFVTVVSP   44 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcC
Confidence            35789999999999999999999     9999999953

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.17  E-value=0.12  Score=50.54  Aligned_cols=31  Identities=26%  Similarity=0.429  Sum_probs=29.5

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +|.|||||..|.+.|..|++     .|++|+++.++
T Consensus         2 kI~IiGaGa~G~ala~~L~~-----~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSS-----KKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHH-----CCCeEEEEecC
Confidence            69999999999999999999     99999999985

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=93.14  E-value=0.14  Score=44.59  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=28.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||-|..|...|..|.+     +|++|.+++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~-----~g~~v~~~d~~~   34 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAK-----AGYEVTVYDRSP   34 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHH-----TTTEEEEEESSH
T ss_pred             CEEEEEchHHHHHHHHHHHHh-----cCCeEEeeccch
Confidence            579999999999999999999     999999999863

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=93.14  E-value=0.12  Score=54.56  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+++++.++
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~-----~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTR-----YASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHc-----cCCEEEEEEeCCc
Confidence            4689999999999999999999     9999999998775

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.10  E-value=0.13  Score=49.18  Aligned_cols=45  Identities=18%  Similarity=0.162  Sum_probs=34.4

Q ss_pred             EEeCC-CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           10 LIFSP-QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        10 ~~~~~-~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+||- --+.-..+||+|||||-+|.-||.-|+-     --.-|+++|=.+
T Consensus       342 ayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAG-----iv~hVtllEF~~  387 (520)
T COG3634         342 AYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAG-----IVEHVTLLEFAP  387 (520)
T ss_pred             eeCCCCCCcccCCceEEEECCCcchHHHHHhHHh-----hhheeeeeecch
Confidence            45541 2344467899999999999999999987     556899998654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.07  E-value=0.14  Score=50.09  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~-----~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLAR-----NGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            479999999999999999999     999999999863

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.04  E-value=0.15  Score=49.32  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=29.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|+.|+.     .|+ +|+++|...
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~-----~g~~~VvlvDi~~   35 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAE-----KELADLVLLDVVE   35 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCCC
Confidence            579999999999999999999     886 899999854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=93.01  E-value=0.13  Score=52.19  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|.|||.|..|++.|..|++     +|++|++++++..
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~-----~G~~V~~~D~~~~   37 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFAS-----RQKQVIGVDINQH   37 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHh-----CCCEEEEEeCCHH
Confidence            579999999999999999999     9999999998653

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.99  E-value=0.12  Score=52.34  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=30.7

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +|.|||.|..|+..|..|++     +|++|++++++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~-----~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLAD-----LGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHh-----cCCeEEEEECCHH
Confidence            69999999999999999999     9999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.99  E-value=0.24  Score=37.18  Aligned_cols=38  Identities=13%  Similarity=0.233  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG  294 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G  294 (487)
                      ...+...+++.|+++++++.|++|..+++++.|+++||
T Consensus        43 ~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   43 AKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            44455556677999999999999999987777888876

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK04148 hypothetical protein; Provisional

Probab=92.95  E-value=0.14  Score=42.53  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|++||.| .|.+.|..|++     .|++|+.+|-+..
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~-----~G~~ViaIDi~~~   50 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKE-----SGFDVIVIDINEK   50 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHH-----CCCEEEEEECCHH
Confidence            4679999999 99999999999     9999999998754

>PLN02546 glutathione reductase

Probab=92.95  E-value=0.14  Score=53.91  Aligned_cols=36  Identities=19%  Similarity=0.327  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.+++
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~-----~g~~Vtlv~~~~~i  287 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNG-----LKSDVHVFIRQKKV  287 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----cCCeEEEEEecccc
Confidence            4689999999999999999999     99999999998764

>TIGR00518 alaDH alanine dehydrogenase

Probab=92.79  E-value=0.16  Score=50.50  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|+.+|..|++     .|.+|++++++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~-----lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANG-----LGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence            34679999999999999999999     999999999853

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=92.72  E-value=0.16  Score=52.78  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -.+|.|||+|..|...|..|++     +|++|+++|++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~-----aG~~V~l~d~~~   38 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAAS-----AGHQVLLYDIRA   38 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            3569999999999999999999     999999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=92.67  E-value=0.17  Score=48.55  Aligned_cols=34  Identities=18%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|+-+|..|++     .+.+|+++++.+
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~-----~~~~V~~v~~~~  174 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTR-----IAKKVTLVHRRD  174 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHh-----hcCEEEEEEeCc
Confidence            4689999999999999999999     999999999854

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12831 putative oxidoreductase; Provisional

Probab=92.66  E-value=0.17  Score=52.19  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||||..|+-+|..|.+     .|.+|+|+++.+
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r-----~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALR-----LGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHH-----cCCEEEEEeecC
Confidence            35789999999999999999999     999999998754

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.54  E-value=0.2  Score=45.10  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|...|..|++     .|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~-----~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLAR-----AGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-----cCCCEEEEECCC
Confidence            4689999999999999999999     998 69999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=92.46  E-value=0.17  Score=50.12  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~   59 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~-----~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVL-----LGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEeecc
Confidence            3579999999999999999999     8986 99998753

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=92.40  E-value=0.16  Score=52.88  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+-|..|++     +|++|+|++++.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~-----~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLL-----AGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            479999999999999999999     999999999864

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=92.35  E-value=0.18  Score=48.24  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||.|..|.+.|..|++     +|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~-----~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRS-----LGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            69999999999999999999     999999998753

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=92.31  E-value=0.13  Score=42.56  Aligned_cols=40  Identities=23%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +..++...+|.|||+|-.|.+.|..|.+     +|+.|.-+..++
T Consensus         4 ~~~~~~~l~I~iIGaGrVG~~La~aL~~-----ag~~v~~v~srs   43 (127)
T PF10727_consen    4 PATQAARLKIGIIGAGRVGTALARALAR-----AGHEVVGVYSRS   43 (127)
T ss_dssp             --------EEEEECTSCCCCHHHHHHHH-----TTSEEEEESSCH
T ss_pred             cccCCCccEEEEECCCHHHHHHHHHHHH-----CCCeEEEEEeCC
Confidence            3446677899999999999999999999     999998776543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.27  E-value=0.18  Score=51.98  Aligned_cols=35  Identities=17%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|+.|+..++.     .|.+|+++|.++
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~-----lGA~V~a~D~~~  198 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGS-----LGAIVRAFDTRP  198 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            46789999999999999999999     999999998865

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.19  E-value=0.19  Score=49.26  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|-.||++|.-|++     .|++|+.+|...
T Consensus         1 MkI~viGtGYVGLv~g~~lA~-----~GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAE-----LGHEVVCVDIDE   33 (414)
T ss_pred             CceEEECCchHHHHHHHHHHH-----cCCeEEEEeCCH
Confidence            579999999999999999999     999999999854

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.18  E-value=0.19  Score=51.70  Aligned_cols=34  Identities=21%  Similarity=0.533  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|+|.|.+|.++|..|++     .|++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~-----~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVK-----LGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHH-----CCCEEEEECCCC
Confidence            4679999999999999999999     999999999764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.16  E-value=0.19  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|+|.|.+|.++|..|.+     .|.+|++.|.++
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~-----~g~~v~~~d~~~   41 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRA-----HLPAQALTLFCN   41 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHH-----cCCEEEEEcCCC
Confidence            4679999999999999999999     999999999654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.90  E-value=0.23  Score=51.07  Aligned_cols=33  Identities=15%  Similarity=0.311  Sum_probs=29.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~   59 (487)
                      ++|+|||+|..|+.+|..|++     .  |++|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~-----~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIAL-----KCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----cCCCCeEEEEECCH
Confidence            579999999999999999999     7  58899999754

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=91.85  E-value=0.23  Score=50.19  Aligned_cols=36  Identities=19%  Similarity=0.300  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .++|+|+|-|.+|++||..|.+     .|.+|++.|.+...
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~-----~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLK-----LGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHH-----CCCeEEEEcCCCCc
Confidence            6889999999999999999999     99999999976544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.84  E-value=0.25  Score=49.55  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|+|+|..|+.+|..++.     .|.+|+|+|.++
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~-----~Ga~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRG-----QGARVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEECCh
Confidence            35789999999999999999999     999999999864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=91.83  E-value=0.37  Score=36.80  Aligned_cols=34  Identities=24%  Similarity=0.476  Sum_probs=30.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEec
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFER   57 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~   57 (487)
                      -..++++|+|+|..|..+|..|.+     . +.+|.++++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~-----~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLAD-----EGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcC
Confidence            345789999999999999999999     7 689999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=91.78  E-value=0.2  Score=47.99  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -+.|.|||||..|-.-|+.++.     .|++|+++|.+.
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~-----~G~~V~l~D~~~   36 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL-----AGYDVVLKDISP   36 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh-----cCCceEEEeCCH
Confidence            4679999999999999999999     999999999873

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.64  E-value=0.32  Score=43.90  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|+|.|-.|..+|..|.+     .|.+|++.|.+.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~-----~G~~Vvv~D~~~   61 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLE-----EGAKLIVADINE   61 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEcCCH
Confidence            34789999999999999999999     999999998763

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=91.57  E-value=0.28  Score=45.02  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.||| +|..|.+.|..|++     .|++|+++.++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~-----~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAK-----AGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHh-----CCCEEEEEEcCH
Confidence            3699997 79999999999999     999999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.56  E-value=0.26  Score=51.21  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ...+|+|+|.|.+|++++..|++     .|.+|++.|.+
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~-----~G~~v~~~D~~   44 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTR-----FGARPTVCDDD   44 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHH-----CCCEEEEEcCC
Confidence            34679999999999999999999     99999999964

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.34  E-value=0.3  Score=53.19  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      -.+|+|||||..|...|..++.     .|++|+++|.++.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~-----~G~~V~l~d~~~~  347 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSAS-----KGVPVIMKDINQK  347 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHh-----CCCeEEEEeCCHH
Confidence            3579999999999999999999     9999999998753

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=91.32  E-value=0.33  Score=46.73  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||.|..|..+|..|++     .|.+|++++++.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~-----~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKA-----LGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            46789999999999999999999     999999999874

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=91.26  E-value=0.25  Score=46.77  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+...+|+|||||.+|++.|..+.+..+  + -+|.|+|-.+
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~--~-g~vgIvep~e   74 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLG--S-GSVGIVEPAE   74 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcC--C-CceEEecchh
Confidence            4467899999999999999999988543  3 3899998765

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.22  E-value=0.31  Score=52.96  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .-++|+|||||..|...|+.++.     +|++|+++|.+.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~-----~G~~V~l~d~~~  346 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSAS-----KGTPIVMKDINQ  346 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            34579999999999999999999     999999999865

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.15  E-value=0.34  Score=47.00  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|+.|+.     .|. +|.++|.+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~-----~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLAL-----KELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCeEEEEEECCC
Confidence            689999999999999999998     765 999999854

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.05  E-value=0.35  Score=46.26  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++|+|||+|-+|-++|+.|++     .|. +|+|++|+.
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~-----~G~~~I~I~nR~~  161 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLT-----LGVERLTIFDVDP  161 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHH-----cCCCEEEEECCCH
Confidence            34689999999999999999999     886 899998863

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.99  E-value=0.31  Score=50.08  Aligned_cols=34  Identities=15%  Similarity=0.265  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|+|+|-+|.++|..|++     .|.+|++.|++.
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~-----~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHK-----LGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH-----CCCEEEEEcCCC
Confidence            4679999999999999999999     999999998753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.93  E-value=0.36  Score=49.50  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|+|.|-+|+++|..|++     .|++|++.|....
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~-----~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRK-----NGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCCC
Confidence            4679999999999999999999     9999999997654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=90.85  E-value=0.45  Score=38.50  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=28.7

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      |+|||.|-.|...|..|.+     .+.+|+++|++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~-----~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-----GGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-----TTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh-----CCCEEEEEECCcH
Confidence            7999999999999999999     8999999999753

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=90.77  E-value=0.37  Score=49.62  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ...+|+|||||..|+-+|..|++     .|. +|+++++++
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~-----~G~~~Vtlv~~~~  307 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKR-----LGAESVTIVYRRG  307 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----cCCCeEEEeeecC
Confidence            35689999999999999999999     887 899998754

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.62  E-value=0.29  Score=47.38  Aligned_cols=33  Identities=24%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|+|+|..|...|++|++     .|.+|+++=|.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~-----~g~~V~~~~R~~   33 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAK-----AGHDVTLLVRSR   33 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHh-----CCCeEEEEecHH
Confidence            479999999999999999999     998888886654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=90.58  E-value=0.39  Score=46.53  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=29.3

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      +|+|||+|-.|.++|+.|+.     .|  .+|++++++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~-----~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVN-----QGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCc
Confidence            69999999999999999999     88  5899999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=90.52  E-value=0.39  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||.|..|...|..|++     .|++|++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~-----~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLK-----AGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence            579999999999999999999     999999998864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.50  E-value=0.45  Score=46.40  Aligned_cols=34  Identities=21%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~   60 (487)
                      .+|+|||||-.|.+.|+.|+.     .|+ +|.++|.+..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~-----~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVL-----KNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEeCCCc
Confidence            689999999999999999999     885 9999998654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.46  E-value=0.39  Score=47.95  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.7

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+||| .|..|-+.|..|++     +|++|+++++++
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~-----~G~~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTL-----SGYQVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHH-----CCCeEEEeCCCc
Confidence            457899999 89999999999999     999999999854

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=90.46  E-value=0.4  Score=44.17  Aligned_cols=35  Identities=26%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC---eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP---RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~---~V~VlE~~~   59 (487)
                      ...+|+|+|||-+|..+|..|.+     .|.   +|.|++++.
T Consensus        24 ~~~rvlvlGAGgAg~aiA~~L~~-----~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGAGAAGIAIARLLLA-----AGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECchHHHHHHHHHHHH-----cCcCcceEEEEeCCC
Confidence            34689999999999999999999     886   599999873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=90.43  E-value=0.42  Score=49.25  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|+.++..++.     .|.+|+++|.+.
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~-----lGA~V~v~d~~~  197 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANS-----LGAIVRAFDTRP  197 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            5789999999999999999999     999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.36  E-value=0.39  Score=52.08  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~   59 (487)
                      -.+|+|||||..|..-|..++ +     .|++|+++|.++
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~-----~G~~V~l~d~~~  338 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATK-----AGIPVRIKDINP  338 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHH-----cCCeEEEEeCCH
Confidence            457999999999999999988 7     899999999875

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.35  E-value=0.32  Score=52.99  Aligned_cols=35  Identities=14%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .-.+|.|||||..|...|+.++.     .|++|+++|.++
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~-----~G~~V~l~d~~~  368 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVD-----KGLKTVLKDATP  368 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHh-----CCCcEEEecCCH
Confidence            34579999999999999999999     999999999865

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.23  E-value=0.35  Score=46.46  Aligned_cols=32  Identities=25%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~-----~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAK-----AGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence            48999999999999999999     999999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.03  E-value=0.37  Score=52.43  Aligned_cols=34  Identities=18%  Similarity=0.217  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHH-HhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLR-QYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~   59 (487)
                      -.+|+|||||..|..-|..++ .     .|++|+++|.+.
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~-----~G~~V~l~d~~~  343 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATK-----AGLPVRIKDINP  343 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHH-----cCCeEEEEeCCH
Confidence            467999999999999999999 7     899999999864

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=90.03  E-value=0.41  Score=52.70  Aligned_cols=34  Identities=15%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~   59 (487)
                      ..+|+|||||..|+-+|..|.+     .|.+ |+|+++++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r-----~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKR-----LGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH-----cCCCeEEEeeecC
Confidence            4689999999999999999999     8987 99998764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=89.97  E-value=0.5  Score=45.27  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||+|-.|.+.|..|+.     .|.+|++++++.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~-----~G~~V~v~~R~~  184 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSA-----LGARVFVGARSS  184 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            35789999999999999999999     999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=89.93  E-value=0.63  Score=39.34  Aligned_cols=35  Identities=37%  Similarity=0.482  Sum_probs=29.3

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||| |-.|.+.|+.|....   -+.++.++|.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~---l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQG---LADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTT---TSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCC---CCCceEEeccCc
Confidence            47999999 999999999999932   345899999863

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=89.68  E-value=0.27  Score=49.05  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=29.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCC--------CCCCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSK--------NWHPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~--------~~G~~V~VlE~~~~~   61 (487)
                      .+|+|||||+.|.=.|..|+..-.+        ....+|+++|+.+++
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            4799999999999999999873210        012488888887663

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=89.56  E-value=0.5  Score=45.58  Aligned_cols=33  Identities=27%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~-----~G~~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLK-----QGHQLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence            369999999999999999999     999999999864

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.55  E-value=0.49  Score=48.93  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|.|+|.|.+|.++|..|.+     .|.+|++.|+.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~-----~G~~V~~~D~~   47 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSE-----LGCDVVVADDN   47 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHH-----CCCEEEEECCC
Confidence            4569999999999999999999     99999999974

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.47  E-value=0.51  Score=39.48  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|...|..|++     .|. +++|+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~-----~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLAR-----SGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHH-----HTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-----hCCCceeecCCc
Confidence            4679999999999999999999     897 79999874

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=89.40  E-value=0.52  Score=45.50  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~-----~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAK-----RGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            69999999999999999999     999999999864

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=89.38  E-value=0.23  Score=48.23  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +.+.+|||||..||-.+..-.+     -|-+||++|--+.+||
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~r-----LGseVT~VEf~~~i~~  248 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSR-----LGSEVTVVEFLDQIGG  248 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHh-----cCCeEEEEEehhhhcc
Confidence            5689999999999999999999     9999999999887664

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=89.35  E-value=0.59  Score=44.37  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++++|+|+|-+|.+.|+.|++     .|.+|+|+.|+.
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~-----~g~~v~v~~R~~  150 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLK-----ADCNVIIANRTV  150 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            35689999999999999999999     999999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=89.33  E-value=0.66  Score=44.98  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      +..+|+|||+|-.|.++|+.|+.     .|  -++.++|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~-----~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILA-----KGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCc
Confidence            45689999999999999999998     55  4799999754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.25  E-value=0.59  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.330  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....|+|||.|..|..+|..|+.     .|.+|+|+|...
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~-----~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARG-----MGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhh-----CcCEEEEEeCCh
Confidence            46789999999999999999999     999999999764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.22  E-value=0.52  Score=46.30  Aligned_cols=31  Identities=23%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCC--------CeEEEEecC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWH--------PRILMFERN   58 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G--------~~V~VlE~~   58 (487)
                      +|.|||||-.|.+.|..|++     .|        ++|+++.++
T Consensus         1 kI~VIGaG~wGtALA~~la~-----ng~~~~~~~~~~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAE-----NARALPELFEESVRMWVFE   39 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHH-----cCCcccccCCceEEEEEec
Confidence            58999999999999999999     89        999999773

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=89.21  E-value=0.5  Score=48.72  Aligned_cols=34  Identities=21%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHH-HHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSS-LAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLs-aA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||.|-+|++ +|..|++     .|++|++.|.+.
T Consensus         7 ~~~v~viG~G~sG~s~~a~~L~~-----~G~~V~~~D~~~   41 (461)
T PRK00421          7 IKRIHFVGIGGIGMSGLAEVLLN-----LGYKVSGSDLKE   41 (461)
T ss_pred             CCEEEEEEEchhhHHHHHHHHHh-----CCCeEEEECCCC
Confidence            457999999999999 5999999     999999999764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=89.16  E-value=0.6  Score=45.80  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .|+ +++|+|..
T Consensus        24 ~~~VlIiG~GglGs~va~~La~-----aGvg~i~lvD~D   57 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVR-----AGIGKLTIADRD   57 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCC
Confidence            4689999999999999999999     997 89999985

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=89.16  E-value=0.6  Score=45.28  Aligned_cols=34  Identities=35%  Similarity=0.443  Sum_probs=29.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ..+|+|||+|..|.+.|..|++     .|.  +|++++++.
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~-----~g~~~~V~~~dr~~   41 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRR-----LGLAGEIVGADRSA   41 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHh-----cCCCcEEEEEECCH
Confidence            3579999999999999999999     884  899998753

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=89.15  E-value=0.72  Score=39.46  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|.+.|..|++     .| .+|++++++.
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~-----~g~~~v~v~~r~~   53 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAE-----LGAAKIVIVNRTL   53 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEcCCH
Confidence            35789999999999999999999     85 8899998763

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=89.15  E-value=0.63  Score=45.70  Aligned_cols=33  Identities=30%  Similarity=0.463  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|--|..+|..|++     .|. +++|+|..
T Consensus        24 ~~~VlVvG~GglGs~va~~La~-----aGvg~i~lvD~D   57 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVR-----AGVGKVTIVDRD   57 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence            5689999999999999999999     998 99999984

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=89.08  E-value=0.49  Score=47.41  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||.|..|+..|..++      .|++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA------~G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA------QNHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH------hCCcEEEEECCH
Confidence            6999999999999996665      589999999865

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=89.06  E-value=0.71  Score=41.35  Aligned_cols=34  Identities=24%  Similarity=0.415  Sum_probs=30.3

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++++|+|| |..|..+|..|++     .|.+|+++.|+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~-----~g~~V~l~~R~   61 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAR-----EGARVVLVGRD   61 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEcCC
Confidence            4578999997 9999999999999     99999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.05  E-value=0.7  Score=44.93  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      .++|+|||+|-.|.++|+.|+.     .|.  ++.++|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~-----~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVN-----QGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCCC
Confidence            3589999999999999999998     786  899999854

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.01  E-value=0.51  Score=45.59  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      |+|||||..|.+.|+.|+.     .|. +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~-----~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLAL-----KELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHh-----CCCcEEEEEeCCC
Confidence            6899999999999999998     776 999999864

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.99  E-value=0.49  Score=48.62  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|.|||.|..|.+.|..|++     +|++|++++++..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~-----~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIAS-----RGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHH-----CCCeEEEEeCCHH
Confidence            479999999999999999999     9999999998654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.90  E-value=0.55  Score=48.97  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||.|.+|+++|..|++     .|++|++.|.+.
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~-----~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCAR-----HGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHH-----CCCEEEEEcCCC
Confidence            4579999999999999999999     999999999754

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=88.80  E-value=0.63  Score=39.02  Aligned_cols=31  Identities=19%  Similarity=0.275  Sum_probs=27.2

Q ss_pred             EEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        24 VvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||..+.+.|..++.     -|++|+|+|-+.
T Consensus         1 L~I~GaG~va~al~~la~~-----lg~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAAL-----LGFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHH-----CTEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHh-----CCCEEEEEcCCc
Confidence            5899999999999999999     999999999764

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=88.79  E-value=0.69  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.399  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .| .+++|+|..
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar-----~GVg~itLiD~D   63 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALAR-----TGIGAITLIDMD   63 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----cCCCEEEEEeCC
Confidence            4689999999999999999999     99 689999874

>PTZ00117 malate dehydrogenase; Provisional

Probab=88.69  E-value=0.73  Score=44.90  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ..+|+|||||-.|.+.|+.|+.     .| .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQ-----KNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHH-----CCCCeEEEEECCC
Confidence            4689999999999999999998     78 6899999864

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=88.36  E-value=0.68  Score=44.74  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||.|..|...|..|++     .|++|++++++.
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~-----~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLR-----GGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence            69999999999999999999     999999998864

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=88.21  E-value=0.76  Score=46.35  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.|+|||.|..|..+|..|+.     .|.+|+++|..+
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~-----~Ga~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRG-----LGARVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcCCc
Confidence            35689999999999999999999     999999999864

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.09  E-value=0.87  Score=44.89  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=27.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|.|||+|..|.+.|..|++     .| .|+++-++
T Consensus         6 ~~mkI~IiGaGa~G~alA~~La~-----~g-~v~l~~~~   38 (341)
T PRK12439          6 REPKVVVLGGGSWGTTVASICAR-----RG-PTLQWVRS   38 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----CC-CEEEEeCC
Confidence            34689999999999999999999     88 57766553

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=88.09  E-value=0.68  Score=39.82  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.++|+|=|-.|-.+|..|+.     .|.+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~-----~Ga~V~V~e~DP   56 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRG-----LGARVTVTEIDP   56 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHH-----TT-EEEEE-SSH
T ss_pred             CCEEEEeCCCcccHHHHHHHhh-----CCCEEEEEECCh
Confidence            5789999999999999999999     999999999865

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=87.92  E-value=0.84  Score=40.13  Aligned_cols=31  Identities=26%  Similarity=0.313  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      +|+|||+|-.|...|..|++     .|. +++++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~-----~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLAR-----SGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence            58999999999999999999     998 59999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.84  E-value=0.7  Score=47.51  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||+|..|...|..|.+     .|++|+++|++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~-----~g~~v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSG-----ENNDVTVIDTDE   33 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCcEEEEECCH
Confidence            479999999999999999999     999999999864

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=87.82  E-value=0.79  Score=43.50  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|.+||-|..|...|.+|.+     +|++|+|++++..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~-----aG~~v~v~~r~~~   34 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLK-----AGHEVTVYNRTPE   34 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHH-----CCCEEEEEeCChh
Confidence            369999999999999999999     9999999999754

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=87.82  E-value=0.85  Score=45.17  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-------CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-------PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-------~~V~VlE~~~   59 (487)
                      .+.+|.|||+|.-|.+.|..|++     .|       ++|.++.++.
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~-----n~~~~~~~~~~V~lw~~~~   51 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGE-----NTQRNYIFHNEVRMWVLEE   51 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-----cCCcccCCCCeEEEEEecc
Confidence            34689999999999999999999     77       7999987654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=87.77  E-value=0.84  Score=43.79  Aligned_cols=35  Identities=14%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~   59 (487)
                      ..+.++|+|||=+|.++|+.|++     .|.+ |+|+.|+.
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~-----~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCAL-----DGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEeCCc
Confidence            34679999999999999999999     9986 99998863

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=87.77  E-value=1  Score=34.93  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=27.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEE-ecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMF-ERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~Vl-E~~~   59 (487)
                      +|.|||+|-.|.+.+..|.+     .|   .+|.+. +++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~-----~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLA-----SGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHH-----TTS-GGEEEEEEESSH
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCCceeEEeeccCcH
Confidence            48899999999999999999     89   899865 7653

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=87.76  E-value=0.66  Score=47.75  Aligned_cols=34  Identities=15%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|.+|+=.|..|++     .+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~-----~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAK-----VAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHH-----hCCeEEEEEeec
Confidence            4689999999999999999999     899999998754

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=87.61  E-value=0.79  Score=43.37  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC---CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH---PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G---~~V~VlE~~~   59 (487)
                      +++|.|||+|..|.+.|..|.+     .|   .+|.+++++.
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~-----~g~~~~~v~v~~r~~   38 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLA-----SGVPAKDIIVSDPSP   38 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHh-----CCCCcceEEEEcCCH
Confidence            4679999999999999999999     88   7899999864

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=87.59  E-value=0.98  Score=42.13  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+..+++|+|||..+...|..++.     -|++|+|+|-++
T Consensus        98 ~p~~~L~IfGaG~va~~la~la~~-----lGf~V~v~D~R~  133 (246)
T TIGR02964        98 PPAPHVVLFGAGHVGRALVRALAP-----LPCRVTWVDSRE  133 (246)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHhc-----CCCEEEEEeCCc
Confidence            456789999999999999999999     999999999654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN02256 arogenate dehydrogenase

Probab=87.51  E-value=0.94  Score=43.75  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||.|..|-+.|..|++     .|++|++++++.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~-----~G~~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVK-----QGHTVLATSRSD   69 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh-----CCCEEEEEECcc
Confidence            35689999999999999999999     999999998753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=87.44  E-value=0.8  Score=51.42  Aligned_cols=35  Identities=17%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||||..|+-+|..+.+     .|.+|+++.+++
T Consensus       446 ~Gk~VvVIGGG~tA~D~A~ta~R-----~Ga~Vtlv~rr~  480 (944)
T PRK12779        446 KGKEVFVIGGGNTAMDAARTAKR-----LGGNVTIVYRRT  480 (944)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEEecC
Confidence            34789999999999999999999     999999998764

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=87.42  E-value=0.9  Score=43.75  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|.|||||.-|.+.|..|++     .|++|+++-++..
T Consensus         2 ~kI~ViGaGswGTALA~~la~-----ng~~V~lw~r~~~   35 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLAR-----NGHEVRLWGRDEE   35 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHh-----cCCeeEEEecCHH
Confidence            579999999999999999999     9999999987643

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=87.35  E-value=0.96  Score=43.15  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ..++|+|+|+|-+|.++|+.|++     .| .+|+|+.|+.
T Consensus       122 ~~k~vlVlGaGg~a~ai~~aL~~-----~g~~~V~v~~R~~  157 (278)
T PRK00258        122 KGKRILILGAGGAARAVILPLLD-----LGVAEITIVNRTV  157 (278)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence            45689999999999999999999     99 7999998863

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=87.34  E-value=1.1  Score=37.98  Aligned_cols=31  Identities=26%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      +|+|||+|-.|...|..|++     .|. +++|+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~-----~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLAR-----SGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCCEEEEEcCC
Confidence            48999999999999999999     997 79999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=87.31  E-value=1  Score=42.77  Aligned_cols=36  Identities=28%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+.|+|||.|..|-+-|..|++     +|+.|.++.+...
T Consensus         2 ~~~~v~IvG~GliG~s~a~~l~~-----~g~~v~i~g~d~~   37 (279)
T COG0287           2 ASMKVGIVGLGLMGGSLARALKE-----AGLVVRIIGRDRS   37 (279)
T ss_pred             CCcEEEEECCchHHHHHHHHHHH-----cCCeEEEEeecCc
Confidence            35689999999999999999999     9999999988654

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=87.16  E-value=1.1  Score=40.50  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ...+|+|||+|-.|..+|..|++     .|. +++++|..
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~-----~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAG-----AGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-----cCCCeEEEecCC
Confidence            35689999999999999999999     996 89998874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.04  E-value=0.79  Score=47.27  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|.|||.|-+|.++|..|++     .|++|++.|..
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~-----~G~~v~~~D~~   41 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVA-----GGAEVIAWDDN   41 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHH-----CCCEEEEECCC
Confidence            3579999999999999999999     99999999964

>PRK08017 oxidoreductase; Provisional

Probab=86.94  E-value=1.1  Score=41.88  Aligned_cols=33  Identities=27%  Similarity=0.166  Sum_probs=29.7

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.|+|+|| |..|.+.|..|++     +|++|+++.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~-----~g~~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKR-----RGYRVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            46999999 9999999999999     999999988753

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.91  E-value=0.82  Score=46.48  Aligned_cols=33  Identities=27%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|.|||-|.+|.++|..|++     .|++|++.|++.
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~-----~G~~V~g~D~~~   36 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQ-----KGVYVIGVDKSL   36 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence            469999999999999999999     999999999753

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.90  E-value=0.94  Score=43.98  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|..+|..|++     .| .+|+|++++.
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~-----~g~~~V~v~~r~~  212 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAA-----KGVAEITIANRTY  212 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence            46789999999999999999988     66 6899998863

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=86.75  E-value=1.1  Score=40.77  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|...|..|++     .|. +++++|..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~-----~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALAR-----SGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence            4689999999999999999999     897 59999874

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=86.70  E-value=1.6  Score=43.40  Aligned_cols=36  Identities=11%  Similarity=0.109  Sum_probs=30.4

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +|+|||||+||+++|..|+++..  .+.+|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~--~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPL--PGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCC--CCCEEEEECCCCC
Confidence            58999999999999999975211  5799999999875

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK00536 speE spermidine synthase; Provisional

Probab=86.68  E-value=0.7  Score=43.36  Aligned_cols=39  Identities=18%  Similarity=0.080  Sum_probs=30.2

Q ss_pred             CCCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           14 PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        14 ~~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      |+...+..++|.|||||=+|  +|+.+.|     ..-+|+++|=..
T Consensus        66 pl~~h~~pk~VLIiGGGDGg--~~REvLk-----h~~~v~mVeID~  104 (262)
T PRK00536         66 GGCTKKELKEVLIVDGFDLE--LAHQLFK-----YDTHVDFVQADE  104 (262)
T ss_pred             HHhhCCCCCeEEEEcCCchH--HHHHHHC-----cCCeeEEEECCH
Confidence            34456677899999999998  5789988     434899988654

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=86.67  E-value=0.94  Score=40.61  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +.+.|||+|-.|.+.|.+|++     .|++|++--++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~-----ag~eV~igs~r   33 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAK-----AGHEVIIGSSR   33 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHh-----CCCeEEEecCC
Confidence            578999999999999999999     99999997544

>PLN02494 adenosylhomocysteinase

Probab=86.51  E-value=1.1  Score=45.41  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|||.|..|..+|..|+.     .|.+|+++|..+
T Consensus       254 GKtVvViGyG~IGr~vA~~aka-----~Ga~VIV~e~dp  287 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKA-----AGARVIVTEIDP  287 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence            5789999999999999999998     999999999865

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=86.48  E-value=1.2  Score=40.68  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=29.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ..++|+|||||-.++.=+..|.+     .|.+|+|+-.
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~-----~gA~VtVVap   56 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLK-----KGCYVYILSK   56 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcC
Confidence            45689999999999999999999     9999999944

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=86.44  E-value=1.6  Score=37.50  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|||-|--|.+-|..|+.     .|.+|+|-++.+
T Consensus         4 ~k~IAViGyGsQG~a~AlNLrD-----SG~~V~Vglr~~   37 (165)
T PF07991_consen    4 GKTIAVIGYGSQGHAHALNLRD-----SGVNVIVGLREG   37 (165)
T ss_dssp             TSEEEEES-SHHHHHHHHHHHH-----CC-EEEEEE-TT
T ss_pred             CCEEEEECCChHHHHHHHHHHh-----CCCCEEEEecCC
Confidence            5689999999999999999999     999999988764

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	487
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-17
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-17
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-15
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	2e-15
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	1e-14
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	2e-14
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	3e-14
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	5e-14
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-13
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	2e-13
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	2e-12
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	9e-12
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	4e-11
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	6e-11
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	2e-10
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	4e-10
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	1e-05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-05
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-05
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	3e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	4e-05
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	5e-05
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	7e-05
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	1e-04
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	7e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 84.2 bits (208), Expect = 1e-17
 Identities = 67/440 (15%), Positives = 124/440 (28%), Gaps = 66/440 (15%)

Query: 20  QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
           ++  + IIG+G  G +   +L Q     +H    + ER   VGG+  +    G+ +E GA
Sbjct: 5   KDSRIAIIGAGPAGLAAGMYLEQ---AGFHD-YTILERTDHVGGKCHSPNYHGRRYEMGA 60

Query: 80  SILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVS 139
            +  P              K   P          + +  +                    
Sbjct: 61  IMGVPSYDTIQEIMDRTGDKVDGP----KLRREFLHEDGEIYVPEKD------------- 103

Query: 140 LANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFE----SVDEMLKWAGLFN 195
                   +R    +  ++   +    K+  Y  +     V E      DE L   G   
Sbjct: 104 -------PVRGPQVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGC-- 154

Query: 196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGG 255
                  E   D  ++P            +     L        +S A   G LW    G
Sbjct: 155 -------EAARDLWINPFTAF-GYGHFDNVPAAYVLKYLDFVTMMSFA--KGDLWTWADG 204

Query: 256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHF 315
              M   L    +     + +I  I+       +++T  +     + V+  PL++   + 
Sbjct: 205 TQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDWD-RESDVLVLTVPLEKFLDYS 263

Query: 316 SPPISIPERKL------QHTHATFVRGALNPAYFGLDGVSKIPELVATI-------EDPD 362
                  ER+       Q            P   G    +  PE +  +        D  
Sbjct: 264 DAD--DDEREYFSKIIHQQYMVDACLVKEYPTISGYVPDNMRPERLGHVMVYYHRWADDP 321

Query: 363 LPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFA 422
                  +L+ H +     +   R+ + D +      V K      W  +PH  + +  A
Sbjct: 322 HQIITTYLLRNHPDYADKTQEECRQMVLDDMETFGHPVEKIIEEQTWYYFPHVSSEDYKA 381

Query: 423 PFILD------GRHLYYVNA 436
            +          R+ +Y   
Sbjct: 382 GWYEKVEGMQGRRNTFYAGE 401

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 84.3 bits (208), Expect = 1e-17
 Identities = 50/303 (16%), Positives = 100/303 (33%), Gaps = 21/303 (6%)

Query: 14  PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQ 73
                     V ++G GI G ++AH LR           ++ E +  +GG + T  ++G 
Sbjct: 9   HHMPRTTGMNVAVVGGGISGLAVAHHLRSR-----GTDAVLLESSARLGGAVGTHALAGY 63

Query: 74  TFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF 133
             E G +    +   T      LNL+ +   +   +    ++   +              
Sbjct: 64  LVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRL----------RSV 113

Query: 134 VQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGL 193
                +   S ++ L   L +   E F+  A +   +   +F  R +     ++L  A  
Sbjct: 114 PASPPAFLASDILPLGARLRVAG-ELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQ 172

Query: 194 FNLTARSLEEELIDARLSPL--LMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWA 251
             + A  +E+  + A    L  + +E  ++I      Q         A +     G L  
Sbjct: 173 TGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALST 232

Query: 252 VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN---SYTCQITVVATPL 308
            +GG   +   L      A H+   +E ++     + L   +       +    V+A P 
Sbjct: 233 FDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPA 292

Query: 309 DEL 311
              
Sbjct: 293 HAT 295

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 78.0 bits (192), Expect = 1e-15
 Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 54/322 (16%)

Query: 20  QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS-GQTFEAG 78
            +  V ++G GI G + A  L           +++ E    VGGR  T+     +  + G
Sbjct: 3   NKCDVVVVGGGISGMAAAKLLHDSG-----LNVVVLEARDRVGGRTYTLRNQKVKYVDLG 57

Query: 79  ASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV 138
            S + P     +   K L L+       E               K+       P V   +
Sbjct: 58  GSYVGPTQNRILRLAKELGLETYKVNEVERLIHH-------VKGKSYPFRGPFPPVWNPI 110

Query: 139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTA 198
           +  +                            ++ + +        D   K         
Sbjct: 111 TYLD-------------------------HNNFWRTMDDMGREIPSDAPWKAPLAEEWDN 145

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWA------- 251
            +++E L     +    Q L T+   +              +      GG          
Sbjct: 146 MTMKELLDKLCWTESAKQ-LATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNG 204

Query: 252 -----VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVAT 306
                  GG+ Q++  +++     + L   +  I   RE   + +     Y  +  + A 
Sbjct: 205 GQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAI 264

Query: 307 PLDEL-NLHFSPPISIPERKLQ 327
           P      +HF+PP  +P  + Q
Sbjct: 265 PPTLGMKIHFNPP--LPMMRNQ 284

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 77.8 bits (191), Expect = 2e-15
 Identities = 46/338 (13%), Positives = 105/338 (31%), Gaps = 23/338 (6%)

Query: 20  QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGA 79
               + I+G GI G + A++  +         I + E    +GG++AT    G T E G 
Sbjct: 3   SSKRLVIVGGGITGLAAAYYAERAFP---DLNITLLEAGERLGGKVATYREDGFTIERGP 59

Query: 80  SILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVS 139
                + +   +  + + L  K   +  +++   I D        I   + +     +  
Sbjct: 60  DSYVARKHILTDLIEAIGLGEKLVRN--NTSQAFILDTGGLH--PIPKGAVMGIPTDLDL 115

Query: 140 LANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET----RPVFESVDEMLK--WAGL 193
              + L+        +       S   +  +           R     V+++++   +G+
Sbjct: 116 FRQTTLLTEE-EKQEVADLLLHPSDSLRIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGI 174

Query: 194 FNLTARSLEEELIDARLSPLLMQE--LVTIITRINYGQSLSISGLAGAVSLAGSGGGLWA 251
           +      +       +      +   L   +  +     L         +   + G   +
Sbjct: 175 YAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRPLDQLP----QTPQTTIKATGQFLS 230

Query: 252 VEGGNWQMAAGLINR-SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310
           +E G   +   L        + L   + +IS     Y L +  G  Y   + ++  P  +
Sbjct: 231 LETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHGPEYADYV-LLTIPHPQ 289

Query: 311 L-NLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDG 347
           +  L     +   E+   H+ AT            ++G
Sbjct: 290 VVQLLPDAHLPELEQLTTHSTATVTMIFDQQQSLPIEG 327

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 75.4 bits (185), Expect = 1e-14
 Identities = 52/351 (14%), Positives = 98/351 (27%), Gaps = 52/351 (14%)

Query: 14  PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQ 73
                     V +IG G  G +    L       +   +L  E    +GGR  +  I G 
Sbjct: 32  EDTDKDGPWDVIVIGGGYCGLTATRDLTV---AGFKTLLL--EARDRIGGRSWSSNIDGY 86

Query: 74  TFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF 133
            +E G + +H   + +  + ++   K  +  S   + + G+         T S   T   
Sbjct: 87  PYEMGGTWVHW--HQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEA 144

Query: 134 VQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGL 193
             +++                        SA+ KF     +   R V     +M      
Sbjct: 145 EDELL-----------------------RSALHKFTNVDGTNG-RTVLPFPHDMFYVPEF 180

Query: 194 FNLTARSLEEEL--IDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWA 251
                 S  E +  I   LS       +     +  G +L  S     +      G  + 
Sbjct: 181 RKYDEMSYSERIDQIRDELSLNERS-SLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQ 239

Query: 252 ----------VEGGNWQ----MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSY 297
                      + G                 +       + S+   R+   + +  G  +
Sbjct: 240 GCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREF 299

Query: 298 TCQITVVATPLDEL-NLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDG 347
             +  V   PL+ L  + FSP   +   ++    A  V       +  +D 
Sbjct: 300 VAKRVVCTIPLNVLSTIQFSPA--LSTERISAMQAGHV-SMCTKVHAEVDN 347

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 74.4 bits (183), Expect = 2e-14
 Identities = 54/329 (16%), Positives = 98/329 (29%), Gaps = 53/329 (16%)

Query: 16  PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTF 75
           PT   +  V I+G+G  G + A  LR+         ++  E    VGGR  T TI G   
Sbjct: 2   PT--LQRDVAIVGAGPSGLAAATALRK---AGLSVAVI--EARDRVGGRTWTDTIDGAVL 54

Query: 76  EAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQ 135
           E G   + P     ++    L LK       E  + +    G                  
Sbjct: 55  EIGGQWVSPDQTALISLLDELGLKT-FERYREGESVYISSAG------------------ 95

Query: 136 KIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFN 195
                        RY          T+  +D+ +   +    +      +E        +
Sbjct: 96  ----------ERTRYTGDSFPTNETTKKEMDRLIDEMDDLAAQI---GAEEPWAHPLARD 142

Query: 196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGL------ 249
           L   S ++ LI+          +   I      +         AV +A S G        
Sbjct: 143 LDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDE 202

Query: 250 -----WAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVV 304
                  V GG  Q++  +       + L+  + ++ +      + +           ++
Sbjct: 203 DFILDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLADGDIRVEASRVIL 262

Query: 305 ATPLDEL-NLHFSPPISIPERKLQHTHAT 332
           A P +    + + PP  +P R+ Q     
Sbjct: 263 AVPPNLYSRISYDPP--LPRRQHQMHQHQ 289

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 73.8 bits (181), Expect = 3e-14
 Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 41/318 (12%)

Query: 19  QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRMATVTISGQTFEA 77
             +  V IIG GI G + A ++ +   +   P  + + E +  VGG++ TV   G   E 
Sbjct: 3   DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIER 62

Query: 78  GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKI 137
           G      +        K L L+     ++  +    +                +P   KI
Sbjct: 63  GPDSFLERKKSAPQLVKDLGLEHLLVNNA--TGQSYVLVNRTLHPMPKGAVMGIPT--KI 118

Query: 138 VSLANSVLM----VLRYGLSLLRM-------ESFTESAVDKFLKYYESFETRPVFESV-- 184
               ++ L       R  +  +         +S  E    +           P+   +  
Sbjct: 119 APFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYA 178

Query: 185 ---DEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVS 241
              D++   +                        Q+  ++I  +   +            
Sbjct: 179 GDIDKLSLMSTFPQFYQ---------------TEQKHRSLILGMKKTRPQGSGQQLT--- 220

Query: 242 LAGSGGGLWAVEGGNWQMAAGLINR-SDVALHLHEEIESISYLREYYELNSTKGNSYTCQ 300
            A   G    +  G   +   +  +     ++   ++  +S+    Y L    G +    
Sbjct: 221 -AKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDAD 279

Query: 301 ITVVATPLDELNLHFSPP 318
             +V  P        S  
Sbjct: 280 SVIVTAPHKAAAGMLSEL 297

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 73.2 bits (179), Expect = 5e-14
 Identities = 54/332 (16%), Positives = 107/332 (32%), Gaps = 41/332 (12%)

Query: 23  TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATV-TISGQTFEAGASI 81
           TV ++G GI G + ++ L +       P++++ E +  +GG + +V   +G  FE G   
Sbjct: 4   TVVVLGGGISGLAASYHLSR---APCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60

Query: 82  LHPKNYHTVNFTKLLN-------LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFV 134
           + P          L++       + P           F    G                 
Sbjct: 61  IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGG----------------- 103

Query: 135 QKIVSLANSVLMVLRYGLSL---LRMESFTESAVDKFLKYYES---FETRPVFESVDEML 188
             + +L   +  +LR        L      E    +  +  E+   F  R +   V  + 
Sbjct: 104 -ALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLA 162

Query: 189 KWAGLFNLTARSLEEELIDARLSPLLMQELV--TIITRINYGQSLSISGLAGAVSLAGSG 246
             +    + A +  E  I +    L   E    +I+  +  G   +    +  +  A + 
Sbjct: 163 MDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAE 222

Query: 247 GG-LWAVEGGNWQMAAGL---INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQIT 302
               W++ GG   +   L   +    V++   + +  +S   E     S + +S      
Sbjct: 223 RWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHV 282

Query: 303 VVATPLDELNLHFSPPISIPERKLQHTHATFV 334
           + A P   L+       +   R L    A  V
Sbjct: 283 ISAIPASVLSELLPAEAAPLARALSAITAVSV 314

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 71.8 bits (176), Expect = 1e-13
 Identities = 51/323 (15%), Positives = 102/323 (31%), Gaps = 38/323 (11%)

Query: 16  PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQ 73
                   V I+G+G+ G S A+ L           +L  E +   GGR+ T      G 
Sbjct: 28  KATSNPKHVVIVGAGMAGLSAAYVLAG---AGHQVTVL--EASERPGGRVRTYRNEEAGW 82

Query: 74  TFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF 133
               G   L  K+     + +  +L+  +     D+  + I +  K V +       + +
Sbjct: 83  YANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKY 142

Query: 134 VQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGL 193
             K      S   +    L  + +E    +     L  Y+++       S  E L   G 
Sbjct: 143 PVKPSEAGKSAGQLYEESLGKV-VEELKRTNCSYILNKYDTY-------STKEYLIKEGD 194

Query: 194 FNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVE 253
            +  A  +  +L++                  + G  +S         +         + 
Sbjct: 195 LSPGAVDMIGDLLNE-----------------DSGYYVSFIESLKHDDIFAYEKRFDEIV 237

Query: 254 GGNWQMAAGLINRSDVALHLHEEIESISYLRE----YYELNSTKGNSYTCQITVVATPLD 309
            G  ++   +       +H + ++  I    +     YE  S +  S T    +V T   
Sbjct: 238 DGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSR 297

Query: 310 ELN-LHFSPPISIPERKL-QHTH 330
            +  + F+PP+   +    +  H
Sbjct: 298 AVRLIKFNPPLLPKKAHALRSVH 320

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 71.3 bits (174), Expect = 2e-13
 Identities = 44/329 (13%), Positives = 104/329 (31%), Gaps = 30/329 (9%)

Query: 13  SPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISG 72
           + +        V +IG+G+ G + A+ L+ +        + +FE  G  GG++ +V+  G
Sbjct: 5   AGEDKHSSAKRVAVIGAGVSGLAAAYKLKIH-----GLNVTVFEAEGKAGGKLRSVSQDG 59

Query: 73  QTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVP 132
             ++ GA+ +             L L+ K       +  +   +G+  +      S+ + 
Sbjct: 60  LIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLL----PSNPID 115

Query: 133 FVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAG 192
            ++   S   S    L+  L  +  ++   S V    +    F  R   + V + L    
Sbjct: 116 LIK---SNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF 172

Query: 193 LFNLTARSLEEELIDARLSPLLMQE------LVTIITRINYGQSLSISGLAGAVSLAGSG 246
           +        +   +      L   E      ++  I      ++    G     +     
Sbjct: 173 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQ 232

Query: 247 GGLWAVEGGNWQMAAGLINR-SDVALHLHEEIESIS-----------YLREYYELNSTKG 294
            G ++  GG   +   +     +  L L+  +  +S           +       +  + 
Sbjct: 233 RGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQS 292

Query: 295 NSYTCQITVVATPLDELNLHFSPPISIPE 323
              +    ++  PL ++          P 
Sbjct: 293 EEESFDAVIMTAPLCDVKSMKIAKRGNPF 321

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 56/316 (17%), Positives = 106/316 (33%), Gaps = 42/316 (13%)

Query: 22  PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASI 81
           P V ++G+G+ G S A  L +    +    +L+ E    +GGRM     +G   E GA+ 
Sbjct: 5   PRVIVVGAGMSGISAAKRLSEAGITD----LLILEATDHIGGRMHKTNFAGINVELGANW 60

Query: 82  LHPKNYHTVNFTKLL---NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIV 138
           +   N   +N    +    LK ++  S  D  A  ++     V+          +VQK +
Sbjct: 61  VEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVY-------DEDYVQKRI 113

Query: 139 SLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTA 198
            LA+SV  +           +   S  D                S+  M +         
Sbjct: 114 ELADSVEEMGEK-----LSATLHASGRDD--------------MSILAMQRLNEHQPNGP 154

Query: 199 RSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGG----LWAVEG 254
            +  + ++D         E   + +  N     + S     V       G    ++ + G
Sbjct: 155 ATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAG 214

Query: 255 GNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP---LDEL 311
              +         D  L L++ +  I Y      + +   + Y+    +V+     L   
Sbjct: 215 QYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSD 274

Query: 312 NLHFSPPISIPERKLQ 327
            + F P   +P  K++
Sbjct: 275 LIQFKPK--LPTWKVR 288

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 66.1 bits (160), Expect = 9e-12
 Identities = 47/352 (13%), Positives = 112/352 (31%), Gaps = 32/352 (9%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT-VTISGQTFEAGASIL 82
           V +IG+G  G   A  L    ++   P  ++ + N   GG  +T VT  G  ++ G  ++
Sbjct: 13  VLVIGAGPTGLGAAKRL----NQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVI 68

Query: 83  HPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLAN 142
                +  +       K  D  + +  +      G    +   +  S +P  +++  +  
Sbjct: 69  FSHYKYFDDCLDEALPKEDDWYTHQRISYV-RCQGQWVPYPFQNNISMLPKEEQVKCIDG 127

Query: 143 SVLMVLRYGLSLLRMESFTESAVDKF-LKYYESFETRPVFESVDEMLKWAGLFNLTARSL 201
            +   L   ++  + ++F E  V        + F  RP             ++ +    +
Sbjct: 128 MIDAALEARVANTKPKTFDEWIVRMMGTGIADLF-MRPYNF---------KVWAVPTTKM 177

Query: 202 EEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAA 261
           +   +  R++      L  + T +  G++    G          GG      GG W   A
Sbjct: 178 QCAWLGERVAAP---NLKAVTTNVILGKTAGNWGPNATFRFPARGGT-----GGIWIAVA 229

Query: 262 GLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPIS 320
             + +         ++  ++       +    G +   +  V    +D L        + 
Sbjct: 230 NTLPKEKTRFGEKGKVTKVNA--NNKTVTLQDGTTIGYKKLVSTMAVDFLAEAMNDQELV 287

Query: 321 IPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLK 372
              ++L ++    +   +     G        +      + + PF   ++  
Sbjct: 288 GLTKQLFYSSTHVIGVGVR----GSRPERIGDKCWLYFPEDNCPFYRATIFS 335

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 65/485 (13%), Positives = 128/485 (26%), Gaps = 120/485 (24%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
             ++G+G+GG     FL    ++N H  I++ E++ ++GGR   +   G     GA  + 
Sbjct: 3   AVVVGAGLGGLLAGAFL----ARNGH-EIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMI 57

Query: 84  PKNYHTVNFTKLL-------NLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQK 136
           P          LL        +   +P          +W+G  F ++             
Sbjct: 58  PHGEDG-PLAHLLRILGAKVEIVNSNPKGK------ILWEGKIFHYRES----------- 99

Query: 137 IVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV---FESVDEMLKWAGL 193
                                +  +     K LK         +       DE +K    
Sbjct: 100 --------------------WKFLSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIG 139

Query: 194 FNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVE 253
            N    S+ E       S  L                L+   LA  +  A   GG   + 
Sbjct: 140 ENEFLLSVLESFAGWADSVSLSD--------------LTALELAKEIRAALRWGGPGLIR 185

Query: 254 GGNWQMAAGL---INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE 310
           GG   +   L   I  +   +   +E+  I    E  ++ +     Y+  + +    + E
Sbjct: 186 GGCKAVIDELERIIMENKGKILTRKEVVEI--NIEEKKVYTRDNEEYSFDVAISNVGVRE 243

Query: 311 L-----NLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPF 365
                   +F          ++ +               + G  +I   +  +  P L  
Sbjct: 244 TVKLIGRDYFDRDYLKQVDSIEPSEGIKF-------NLAVPGEPRIGNTI--VFTPGLMI 294

Query: 366 ------------------TCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRI 407
                             T I         +    I       +   +++  +  E   +
Sbjct: 295 NGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAI-------EKGWEELLEIFPEGEPL 347

Query: 408 NW----GAYPHYKAPEVFAP-FILDGRHLYYVNAFENAASTMETSAVA--AENVARLILS 460
                    P  +        + L+   +  V         +E   +A         +  
Sbjct: 348 LAQVYRDGNPVNRTRAGLHIEWPLNE--VLVVGDGYRPPGGIEVDGIALGVMKALEKLNL 405

Query: 461 RFFSK 465
             FS+
Sbjct: 406 GSFSE 410

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 61.8 bits (149), Expect = 2e-10
 Identities = 43/359 (11%), Positives = 100/359 (27%), Gaps = 35/359 (9%)

Query: 19  QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT-VTISGQTFEA 77
              P + IIG+G  G   A  L    ++  +    ++E N   GG   + +  +G T++ 
Sbjct: 7   LLTPKIVIIGAGPTGLGAAVRL----TELGYKNWHLYECNDTPGGLSRSFLDENGFTWDL 62

Query: 78  GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKI 137
           G  ++     +  +                +S  +    G    +   +    +P   + 
Sbjct: 63  GGHVIFSHYQYFDDVMDWAVQ--GWNVLQRESWVW--VRGRWVPYPFQNNIHRLPEQDRK 118

Query: 138 VSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLT 197
                  L+            +F ES   +F +       RP             ++ + 
Sbjct: 119 --RCLDELVRSHARTYTEPPNNFEESFTRQFGEGIADIFMRPYNF---------KVWAVP 167

Query: 198 ARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNW 257
              +  E ++ R++P+ ++ +   I           +         G  G +       +
Sbjct: 168 PCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRF-PQRGGTGII-------Y 219

Query: 258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFS 316
           Q     +    +    +   ++I+   +   +  + G   +    +   P D L  +   
Sbjct: 220 QAIKEKLPSEKL--TFNSGFQAIAIDADAKTITFSNGEVVSYDYLISTVPFDNLLRMTKG 277

Query: 317 PPISIPERKLQHTHATFVRGALNPAYFGLDGVSK---IPELVATIEDPDLPFTCISVLK 372
                 +               N    G+ G               +   PF   +V  
Sbjct: 278 TGFKGYDEWPAIADKMVYSS-TNVIGIGVKGTPPPHLKTACWLYFPEDTSPFYRATVFS 335

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 45/308 (14%), Positives = 92/308 (29%), Gaps = 40/308 (12%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS---GQTFEAGAS 80
             ++G G  G   A  L           +L  E    +GGR  +       G   E G +
Sbjct: 4   AIVVGGGFSGLKAARDLTN---AGKKVLLL--EGGERLGGRAYSRESRNVPGLRVEIGGA 58

Query: 81  ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSL 140
            LH K++  +     L+                     ++   T + S    F  ++   
Sbjct: 59  YLHRKHHPRL--AAELD---------------------RYGIPTAAASEFTSFRHRLGPT 95

Query: 141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
           A      +    ++    +      D      E        E +D  L    +  L    
Sbjct: 96  AVDQAFPIPGSEAVAVEAATYTLLRDAHRIDLEKGLENQDLEDLDIPL-NEYVDKLDLPP 154

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
           +  + + A    +L Q       + +    L +        L            G+  + 
Sbjct: 155 VSRQFLLAWAWNMLGQPA----DQASALWMLQLVAAHHYSILGVVLSLDEVFSNGSADLV 210

Query: 261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPI 319
             + ++    + L   +  I    +   +    G+++     +VATP++    + F+P  
Sbjct: 211 DAM-SQEIPEIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPA- 268

Query: 320 SIPERKLQ 327
            +PER+  
Sbjct: 269 -LPERRRS 275

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 59/325 (18%), Positives = 95/325 (29%), Gaps = 62/325 (19%)

Query: 19  QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTFEA 77
             +  V IIG+GI G   A  L Q   ++     L+ E    VGGR+ TVT   G+ ++ 
Sbjct: 6   PAKKKVIIIGAGIAGLKAASTLHQNGIQD----CLVLEARDRVGGRLQTVTGYQGRKYDI 61

Query: 78  GASILHPKNYHTV-NFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQK 136
           GAS  H    + +      L+L         D   F   D  +       V      + +
Sbjct: 62  GASWHHDTLTNPLFLEEAQLSLNDGRTRFVFDDDNFIYIDEERGR-----VDHDKELLLE 116

Query: 137 IVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNL 196
           IV    S    L +   L   +      V K+L     F T      + ++ ++  L+  
Sbjct: 117 IVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELW-- 174

Query: 197 TARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGN 256
                                             L    L+ A        G  A     
Sbjct: 175 --------------------------------HGLDWKLLS-AKDTYFGHQGRNAFALNY 201

Query: 257 WQMAAGLINR-SDVALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDEL--- 311
             +   +        L L  E++SI+    +   +N   G  Y     ++  P   L   
Sbjct: 202 DSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLS 261

Query: 312 ---------NLHFSPPISIPERKLQ 327
                     + F PP  +      
Sbjct: 262 VQPEKNLRGRIEFQPP--LKPVIQD 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 5e-07
 Identities = 64/478 (13%), Positives = 121/478 (25%), Gaps = 143/478 (29%)

Query: 19  QQEPTVCIIG-SGIGGSSLA-HFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFE 76
           +    V I G  G G + +A      Y  +                 ++  + +      
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------------FKIFWLNL-KNCNS 194

Query: 77  AGASILHPKN-YHTV--NFTKLLNLKPKDPPSSEDSTAF------------------GIW 115
               +   +   + +  N+T   +             A                    + 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254

Query: 116 DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSL-LRMESFTES-AVDKFLKYY- 172
           +     +   ++S  +    +   + + +       +SL     + T        LKY  
Sbjct: 255 NAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 173 --------ESFETRPVFESV------DEMLKWAGLFNLTARSLEEELIDA---RLSPLLM 215
                   E   T P   S+      D +  W    ++    L   +I++    L P   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEY 371

Query: 216 QEL----------VTIITRINYGQSLSISGLAGAVSLAGSGGGLWA------VEGGNWQM 259
           +++            I T       LS+               +W       V      +
Sbjct: 372 RKMFDRLSVFPPSAHIPT-----ILLSL---------------IWFDVIKSDVM----VV 407

Query: 260 AAGLINRSDVALHLHEEIESIS--YLR------EYYELNSTKGNSYT-----CQITVVAT 306
              L   S V     E   SI   YL         Y L+ +  + Y          ++  
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 307 PLDE-----LNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDP 361
            LD+     +  H         + ++H      R  L    F LD       L   I   
Sbjct: 468 YLDQYFYSHIGHHL--------KNIEHPE----RMTLFRMVF-LD----FRFLEQKIRHD 510

Query: 362 DLPFTCISVLKQHDENDF-TYK--IFSRKPMTDTLLDDI--FSVRKETIRINWGAYPH 414
              +     +  +       YK  I    P  + L++ I  F  + E   I      +
Sbjct: 511 STAWNASGSI-LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC---SKY 564

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 48/291 (16%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V ++G+G+    L+  +     K  H      +RN   GG  +++T   + ++    +  
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLH-----MDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSK--FVFKTISVSSTVPFVQKIVSLA 141
           P           ++L PK   ++       ++        FK +  S  V    KI  + 
Sbjct: 64  PPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSF-VYKGGKIYKVP 122

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP--VFESVDEMLKWAGLFNLTAR 199
           ++    L   L    M  F +    KFL +  +F+      FE VD              
Sbjct: 123 STETEALASNL----MGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDV-YRKF 177

Query: 200 SLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQM 259
            L +++ID     L +      + +        I   + +++  G    L+ +  G  ++
Sbjct: 178 DLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPL-YGLGEL 236

Query: 260 AAGLINRSDVA---LHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP 307
             G    S +      L++ ++ I           ++G    C+  ++  P
Sbjct: 237 PQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQ-LICDP 286

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI---SGQTFEAG 78
            V I+G+G+ GS  A  LR+ +S      + ++++    GGRM T         T + G
Sbjct: 2  AQVLIVGAGMTGSLCAALLRRQTSGPL--YLAVWDKADDSGGRMTTACSPHNPQCTADLG 59

Query: 79 ASILHPKNYHTVNFTK 94
          A  +    ++     +
Sbjct: 60 AQYITCTPHYAKKHQR 75

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 24  VCIIGSGIGGSSLAHFLRQ--YSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASI 81
             +IG+G+GG   A  L +  +        + +FER  + GGR   ++  G    +GA  
Sbjct: 3   TVVIGAGLGGLLSAARLSKAGH-------EVEVFERLPITGGRFTNLSYKGFQLSSGAFH 55

Query: 82  L---HPKNYHTVNFTKL---LNLKPKDPP 104
           +    P         ++   +N+   +  
Sbjct: 56  MLPNGPGGPLACFLKEVEASVNIVRSEMT 84

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 44/339 (12%), Positives = 101/339 (29%), Gaps = 52/339 (15%)

Query: 16  PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTF 75
              +   +V ++G G  G   A  L++     +   +L  E     GGR+ T     +  
Sbjct: 6   GKVKGSHSVVVLGGGPAGLCSAFELQK---AGYKVTVL--EARTRPGGRVWTARGGSEET 60

Query: 76  EAGASILH----------------PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSK 119
           +                       P+++ T+++ + L ++ +   +   +T         
Sbjct: 61  DLSGETQKCTFSEGHFYNVGATRIPQSHITLDYCRELGVEIQGFGNQNANTF-------- 112

Query: 120 FVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP 179
                ++  S      + V+   +      Y   LL+  +  + A+D+ L   +      
Sbjct: 113 -----VNYQSDTSLSGQSVTYRAAKADTFGYMSELLKK-ATDQGALDQVLSREDKDALSE 166

Query: 180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGA 239
                 ++         + R  + E   A L+    ++           Q +  SG+   
Sbjct: 167 FLSDFGDLSDDGRYLGSSRRGYDSE-PGAGLNFGTEKKP-------FAMQEVIRSGIGRN 218

Query: 240 VSLAGSG---GGLWAVEGGNWQMAAGLINR-SDVALHLHEEIESISYLREYYELNSTKGN 295
            S          ++   GG  ++     +R     +    E+ S+  + E   +  T G 
Sbjct: 219 FSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGG 278

Query: 296 ---SYTCQITVVATPLDELNLHFSPPISIPERK-LQHTH 330
              S T    +   P   +       +       L+   
Sbjct: 279 SKKSITADYAICTIPPHLVG-RLQNNLPGDVLTALKAAK 316

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 57/388 (14%), Positives = 110/388 (28%), Gaps = 83/388 (21%)

Query: 14  PQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQ 73
                ++   V IIGSG+ G + A  L+ +        + + E    VGGR+AT      
Sbjct: 100 KPLPTKKTGKVIIIGSGVSGLAAARQLQSFG-----MDVTLLEARDRVGGRVATFRKGNY 154

Query: 74  TFEAGASILHPK---------------------------------------------NYH 88
             + GA ++                                                N  
Sbjct: 155 VADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRL 214

Query: 89  TVNFTKLLNLKPKDPPSSED-STAFGIWDG-----SKFVFKTISVSSTVPFVQKIVSLAN 142
               + L +    +  +++  S    +             + I     +   Q+ +    
Sbjct: 215 LEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELL 274

Query: 143 SVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLE 202
           + ++ L+  +  L  +    S V         F  +     +  + K       T   LE
Sbjct: 275 NKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLE 334

Query: 203 EELIDARLSPLLMQELVTIITRINYGQSLSISGLAGA----VSLAG--------SGGGLW 250
           E+L +   +P     L +   +I      ++          +SL            G   
Sbjct: 335 EKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHL 394

Query: 251 AVEGGNWQMAAGLINRSDVALHLHEEIESISY------LREYYELNSTKGNSYTCQITVV 304
            V  G   +   L    D+   L+  +  + Y      +      ++++   Y C   + 
Sbjct: 395 TVRNGYSCVPVALAEGLDI--KLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLC 452

Query: 305 ATPLDELN-----LHFSPPISIPERKLQ 327
             PL  L      + F PP  +PE K  
Sbjct: 453 TLPLGVLKQQPPAVQFVPP--LPEWKTS 478

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEA-GASIL 82
            I+GSG+ G+  A+ L++    N   ++L+ E+   +GG   T    G      GA I 
Sbjct: 4  YIIVGSGLFGAVCANELKK---LNK--KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIF 58

Query: 83 HPKNYHTVNF 92
          H  + +  ++
Sbjct: 59 HTNDKYIWDY 68

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 38/298 (12%), Positives = 84/298 (28%), Gaps = 24/298 (8%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V I+G+G+    L+  L      ++  +IL+ +RN   GG  A++ ++            
Sbjct: 23  VIILGTGLKECILSGLL-----SHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENI 77

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFV-FKTISVSSTVPFVQKIVSLAN 142
           P  Y       +  +                   + ++ +  +  S      +K    + 
Sbjct: 78  PSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSE 137

Query: 143 SVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLE 202
             +    + +    ME+     +    K       + V E            +    ++ 
Sbjct: 138 KFI----HKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTML 193

Query: 203 EELIDARLSPLLMQEL---VTIITRINYGQSLSISGLAGAVSLAGS-----GGGLWAVEG 254
           E      L  L +  L   V +    +Y +  +   L        S              
Sbjct: 194 EIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLY 253

Query: 255 GNWQMAAGLINRSDVA---LHLHEEIESISYLRE--YYELNSTKGNSYTCQITVVATP 307
           G   +  G      +      L++ +    +  +     + S+ G    C   V+  P
Sbjct: 254 GLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDK-VICDP 310

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 17/75 (22%)

Query: 13 SPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISG 72
                  +  V IIG G  G ++A  L+Q         +  +ER+     R        
Sbjct: 18 GSHMNLLSDKNVAIIGGGPVGLTMAKLLQQ---NGIDVSV--YERDNDREAR-------- 64

Query: 73 QTFEAGASI-LHPKN 86
               G ++ LH  +
Sbjct: 65 ---IFGGTLDLHKGS 76

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 8   ILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67
           I     P PT +    V IIGSG+ G + A  L+ +        + + E    VGGR+AT
Sbjct: 266 IYKRIKPLPTKKT-GKVIIIGSGVSGLAAARQLQSFG-----MDVTLLEARDRVGGRVAT 319

Query: 68  VTISGQTFEAGASILH 83
                   + GA ++ 
Sbjct: 320 FRKGNYVADLGAMVVT 335

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 13  SPQPTFQQEPT-----VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMAT 67
            P P  +         V I+GSG  G + A  L        + ++ MF+     G   + 
Sbjct: 33  LPGPDKKVPGMDIKYDVVIVGSGPIGCTYAREL----VGAGY-KVAMFDI----GEIDSG 83

Query: 68  VTISGQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISV 127
           + I            +   +  V   +L+++         D+ +   W  S F  +  S 
Sbjct: 84  LKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSN 143

Query: 128 SSTVPFVQ 135
               P   
Sbjct: 144 PEQDPLRN 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	100.0
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.96
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.95
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.94
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.94
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.93
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.93
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.93
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.93
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.92
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.91
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.91
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.91
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.91
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.89
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.87
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.86
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.86
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.86
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.86
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.85
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.85
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.85
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.83
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.83
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.82
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.79
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.79
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.78
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.78
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.77
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.75
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.6
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.38
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.36
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.35
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.33
3dme_A	369	Conserved exported protein; structural genomics, P	99.31
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.31
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.3
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.22
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.22
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.21
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.19
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.16
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.16
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.13
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.13
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.13
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.12
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.12
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.12
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.12
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.11
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.11
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.1
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.1
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.08
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.07
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.05
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.02
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.02
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.01
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.98
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.98
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.98
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.96
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.96
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.95
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.95
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.94
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.93
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.92
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.89
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.88
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.87
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.86
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.86
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.85
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.84
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.84
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.84
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.84
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.83
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.82
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.81
3atr_A	453	Conserved archaeal protein; saturating double bond	98.81
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.8
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.8
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.79
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.79
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.78
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.76
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.72
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.71
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.7
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.69
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.68
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.68
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.68
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.67
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.67
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.66
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.65
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.61
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.6
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.59
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.59
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.56
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.56
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.56
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.55
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.54
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.5
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.48
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.43
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.41
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.39
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.31
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.31
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.31
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.3
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.28
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.28
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.24
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.24
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.23
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.23
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.21
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.21
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.21
4dna_A	463	Probable glutathione reductase; structural genomic	98.21
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.21
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.2
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.19
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.18
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.17
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.14
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.14
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.14
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.14
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.14
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.13
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.12
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.12
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.11
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.11
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.1
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.1
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.09
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.09
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.08
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.07
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.06
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.06
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.06
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.04
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.04
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.04
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.02
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.01
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.99
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.99
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.98
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.98
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.97
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.97
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.91
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.9
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.9
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.88
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.87
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.86
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.85
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.84
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.84
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.84
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.83
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.83
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.82
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.81
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.81
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.79
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.78
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.78
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.76
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.75
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.75
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.74
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.74
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.74
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.73
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.71
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.71
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.7
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.7
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.7
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.69
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.69
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.68
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.67
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.63
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.63
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.62
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.61
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.6
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.59
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.59
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.58
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.57
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.57
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.57
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.54
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.54
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.53
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.51
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.5
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.49
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.49
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	97.48
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.47
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.46
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.46
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.45
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.38
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.38
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.37
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.36
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.35
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.34
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.32
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.31
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.29
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.26
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.19
4dna_A	463	Probable glutathione reductase; structural genomic	97.19
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.15
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.14
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.13
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.11
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.11
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.01
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	96.94
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.86
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.72
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	96.65
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.49
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.34
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.06
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.03
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.02
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.8
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.79
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.76
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	95.55
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.5
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	95.28
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.26
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.24
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.18
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.07
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.01
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.98
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.96
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	94.94
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.76
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	94.7
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.67
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	94.66
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.61
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	94.59
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	94.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.55
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	94.53
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.51
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.43
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.41
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.41
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	94.39
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.34
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	94.31
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.21
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.2
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.2
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.2
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.15
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.15
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	94.1
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.09
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	94.08
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	94.07
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	94.02
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	93.96
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.95
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	93.91
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	93.89
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	93.88
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	93.84
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	93.82
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	93.76
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.74
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.73
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.72
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	93.72
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	93.67
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	93.66
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.59
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.58
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	93.56
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.53
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.47
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.44
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	93.35
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.35
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	93.35
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.28
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.27
3qha_A	296	Putative oxidoreductase; seattle structural genomi	93.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.15
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.14
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	93.14
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.1
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	93.04
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	93.02
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.01
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.0
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.93
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.83
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.82
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	92.76
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.68
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.68
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	92.66
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	92.63
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.6
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	92.6
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.56
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.55
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.55
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.54
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	92.53
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.44
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	92.43
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.42
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	92.37
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.34
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	92.33
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	92.3
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.24
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	92.22
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	92.22
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	92.22
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.21
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	92.17
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.14
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	92.08
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.04
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.03
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.02
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.93
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.88
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.88
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.87
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	91.87
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.85
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	91.84
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.82
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	91.78
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	91.76
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	91.73
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.72
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	91.66
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.61
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	91.61
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.59
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	91.52
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	91.52
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	91.44
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	91.37
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	91.36
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	91.35
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	91.33
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.27
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	91.24
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	91.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.23
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.15
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	91.08
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.04
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.04
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.02
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	90.97
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	90.96
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.95
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.92
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	90.83
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.79
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	90.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.69
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.65
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	90.6
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	90.57
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	90.57
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	90.54
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.53
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	90.5
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	90.49
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	90.4
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.4
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.4
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.37
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.36
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	90.26
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	90.24
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.2
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	90.2
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.08
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	90.05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.04
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	90.03
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	89.96
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	89.89
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.66
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	89.53
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.48
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	89.47
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	89.37
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.33
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.3
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	89.22
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	89.2
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.2
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.19
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	89.17
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	89.09
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.99
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.99
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	88.96
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	88.9
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.87
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	88.8
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	88.77
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	88.75
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	88.74
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	88.67
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	88.56
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	88.5
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.49
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	88.3
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.24
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	88.23
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	88.21
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.21
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	88.16
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	88.12
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	88.12
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	87.84
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	88.02
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	87.94
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	87.84
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	87.84
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	87.76
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.64
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	87.54
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	87.52
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	87.5
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.4
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	87.3
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.23
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	87.23
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	87.18
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	87.15
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	87.13
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	87.04
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	87.01
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	87.01
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	87.0
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	86.72
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	86.51
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	86.41
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	86.32
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	86.3
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	86.3
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	86.06
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	86.05
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	85.76
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	85.73
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	85.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	85.49
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	85.44

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=100.00  E-value=7.6e-36  Score=309.35  Aligned_cols=383  Identities=18%  Similarity=0.241  Sum_probs=221.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      +++|||||||++||+||++|++     +|++|+||||++++|||++|+..+|+.||.|++++..+.. ..++++.++...
T Consensus         1 Mk~VvVIGaG~~GL~aA~~La~-----~G~~V~VlEa~~~~GG~~~t~~~~G~~~D~G~~~~~~~~~-~~~l~~~~g~~~   74 (501)
T 4dgk_A            1 MKPTTVIGAGFGGLALAIRLQA-----AGIPVLLLEQRDKPGGRAYVYEDQGFTFDAGPTVITDPSA-IEELFALAGKQL   74 (501)
T ss_dssp             CCCEEEECCHHHHHHHHHHHHH-----TTCCEEEECCC-------CEEEETTEEEECSCCCBSCTHH-HHHHHHTTTCCG
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-----CCCcEEEEccCCCCCCcEEEEEeCCEEEecCceeecCchh-HHHHHHHhcchh
Confidence            4789999999999999999999     9999999999999999999999999999999999876543 346777777543


Q ss_pred             CCCC---CCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512          101 KDPP---SSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus       101 ~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ....   .....+++.+.+|..+.+..+    ...+.+.+.++.+.         +...+.+|++.....+......+ .
T Consensus        75 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~l~~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~-~  140 (501)
T 4dgk_A           75 KEYVELLPVTPFYRLCWESGKVFNYDND----QTRLEAQIQQFNPR---------DVEGYRQFLDYSRAVFKEGYLKL-G  140 (501)
T ss_dssp             GGTCCEEEESSSEEEEETTSCEEEECSC----HHHHHHHHHHHCTH---------HHHHHHHHHHHHHHHTSSSCC---C
T ss_pred             hhceeeEecCcceEEEcCCCCEEEeecc----HHHHHHHHhhcCcc---------ccchhhhHHHHHHHhhhhhhhhc-c
Confidence            2211   112234455567777766432    11122222222211         23344555544433332222111 1


Q ss_pred             CCCCCCHHHHHHHcC-Chhh-hcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhcCCCCceEeecc
Q 043512          178 RPVFESVDEMLKWAG-LFNL-TARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGG  255 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~gG  255 (487)
                      ..++.+..+++.... +..+ ...++.+++.+...++.+. .++........+.+...++++.++.......|.|+|+||
T Consensus       141 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~G~~~p~GG  219 (501)
T 4dgk_A          141 TVPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLR-QAFSFHSLLVGGNPFATSSIYTLIHALEREWGVWFPRGG  219 (501)
T ss_dssp             CCCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHH-HHHHHHHHHHHSCC--CCCTHHHHHHHHSCCCEEEETTH
T ss_pred             ccccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHH-hhhhhhhcccCCCcchhhhhhhhhhhhhccCCeEEeCCC
Confidence            223445555543221 1111 1245666666654444433 333322222233445667777777777777899999999


Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCeeecCCCCC------CCcC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNLHFSPPISI------PERK  325 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~~l~p~~~~------~~~~  325 (487)
                      +++++++|++   +.|++|++|++|++|..+++++ +|++.+|+++.||.||+|++++.+...+.++.+.      ...+
T Consensus       220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~~~~~Ll~~~~~~~~~~~~~~~  299 (501)
T 4dgk_A          220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVHTYRDLLSQHPAAVKQSNKLQT  299 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC------------------------
T ss_pred             CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHHHHHHhccccccchhhhhhhhc
Confidence            9999999976   4699999999999999999987 6999999999999999999999876655554322      2233


Q ss_pred             eEEEEEEEeeCCcCcccccCCCCCCCCceeEeccCCCCCeeEeeeccccCCCCcEEEeccCCCCCHHHHhhhcccCCceE
Q 043512          326 LQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETI  405 (487)
Q Consensus       326 ~~~~~~~~~~~~l~~~y~g~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~l~~~~l~~~f~~~~~~~  405 (487)
                      .+.+.+.++      +|++++..           .+.+++|++.+..++                ++.+.++|....  .
T Consensus       300 ~~~~~s~~~------~~~~l~~~-----------~~~l~~~~i~~~~~~----------------~~~~~~~~~~~~--~  344 (501)
T 4dgk_A          300 KRMSNSLFV------LYFGLNHH-----------HDQLAHHTVCFGPRY----------------RELIDEIFNHDG--L  344 (501)
T ss_dssp             ---CCEEEE------EEEEESSC-----------CTTSCSEEEEEECC-------------------------------C
T ss_pred             cccCCceeE------EEecccCC-----------ccccccceeccccch----------------hhhccccccccc--c
Confidence            445566777      89999876           356778998877665                455666665433  3


Q ss_pred             EEeccCCCCCCCCC----CCCCceeeCCceeeec--chhhhHHHHhHHHHHHHHHHHHHHhhhhcC
Q 043512          406 RINWGAYPHYKAPE----VFAPFILDGRHLYYVN--AFENAASTMETSAVAAENVARLILSRFFSK  465 (487)
Q Consensus       406 ~~~w~~yp~~~~~~----~~~p~~l~g~~~~~~~--~~~~~~s~~~~~~~~g~~~a~~i~~~l~~~  465 (487)
                      +.++..|.  +.|+    +.+|   +|++.+++.  .+.......+|.. ..+.++++|++.++++
T Consensus       345 ~~~~~~~v--~~~s~~dp~~ap---~G~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~vl~~l~~~  404 (501)
T 4dgk_A          345 AEDFSLYL--HAPCVTDSSLAP---EGCGSYYVLAPVPHLGTANLDWTV-EGPKLRDRIFAYLEQH  404 (501)
T ss_dssp             CCEEEEEE--ECGGGTCGGGSS---TTCEEEEEEEEECCTTTSCCCHHH-HHHHHHHHHHHHHHHH
T ss_pred             ccCCceec--ccCCCCCCCcCC---CCCceEEEEEecCccccccccHHH-HHHHHHHHHHHHHHHh
Confidence            33444443  3332    4567   677766652  2222223456765 5678899999888764

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.96  E-value=1e-27  Score=247.91  Aligned_cols=258  Identities=18%  Similarity=0.188  Sum_probs=172.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      +||+|||||++||+||+.|++     .|++|+|+|+++++|||++|...+|+.+|.|+++++..+..+.++++++|+...
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~-----~g~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~~l~~lgl~~~  114 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV-----AGFKTLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNA  114 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-----TTCCEEEECSSSBSBTTCCEEEETTEEEECSCCCBCTTSHHHHHHHHHTTCTTC
T ss_pred             CCEEEECCcHHHHHHHHHHHH-----CCCCEEEEeCCCCCCCcceecccCCeeecCCCeEecCccHHHHHHHHHcCCcce
Confidence            799999999999999999999     999999999999999999999999999999999999878888889999998432


Q ss_pred             CCCC---CCCCceEEEEc--CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHh----h
Q 043512          102 DPPS---SEDSTAFGIWD--GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKY----Y  172 (487)
Q Consensus       102 ~~~~---~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  172 (487)
                      ....   ......+.+.+  |....+.           ..  ....                 .+......+...    .
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~--~~~~-----------------~~~~~~~~~~~~~~~~~  164 (495)
T 2vvm_A          115 LSPSFNFSRGVNHFQLRTNPTTSTYMT-----------HE--AEDE-----------------LLRSALHKFTNVDGTNG  164 (495)
T ss_dssp             EEESCCCSSSCCEEEEESSTTCCEEEC-----------HH--HHHH-----------------HHHHHHHHHHCSSSSTT
T ss_pred             eecccccCCCceEEEecCCCCceeecC-----------HH--HHHH-----------------HHHHHHHHHHccchhhh
Confidence            2111   11111233333  2222221           10  0000                 001111112110    0


Q ss_pred             hhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhc-----
Q 043512          173 ESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR--LSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAG-----  244 (487)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-----  244 (487)
                      ..+.. .++....    ......+...++.+|+.+.+  +++.. ..++..+....++.+. ++++...+..+..     
T Consensus       165 ~~~~~-~~~~~~~----~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  238 (495)
T 2vvm_A          165 RTVLP-FPHDMFY----VPEFRKYDEMSYSERIDQIRDELSLNE-RSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTY  238 (495)
T ss_dssp             TTTCS-CTTSTTS----STTHHHHHTSBHHHHHHHHGGGCCHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSH
T ss_pred             hhcCC-CCCCccc----CcchhhhhhhhHHHHHHHhhccCCHHH-HHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCH
Confidence            00000 0011100    01112345678999998876  66654 4566777777777666 4555433222111     


Q ss_pred             ----CCCCceEeecchHHHHHHHHHhc---C-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-Ceee
Q 043512          245 ----SGGGLWAVEGGNWQMAAGLINRS---D-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHF  315 (487)
Q Consensus       245 ----~~~g~~~~~gG~~~l~~~l~~~~---G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l  315 (487)
                          ...+.|+++||+++++++|++.+   | ++|+++++|++|..+++++.|++.+|+++.||+||+|+|+... .+.|
T Consensus       239 ~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~~i~~  318 (495)
T 2vvm_A          239 QGCMDCLMSYKFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNVLSTIQF  318 (495)
T ss_dssp             HHHHHHHHSEEETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGGGGGSEE
T ss_pred             HHHHhhhceEEeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHHhheee
Confidence                01247889999999999998764   5 7899999999999888889999999988999999999999875 3556


Q ss_pred             cCCCC
Q 043512          316 SPPIS  320 (487)
Q Consensus       316 ~p~~~  320 (487)
                      .|++|
T Consensus       319 ~p~lp  323 (495)
T 2vvm_A          319 SPALS  323 (495)
T ss_dssp             ESCCC
T ss_pred             CCCCC
Confidence            77664

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.95  E-value=1.2e-26  Score=241.15  Aligned_cols=263  Identities=17%  Similarity=0.227  Sum_probs=179.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC-CeEecccceeEecCChhHHHHHHHcCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS-GQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~-g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      +.+||+|||||++||+||+.|++     +|++|+|+|+++++|||+++.... |+.+|.|+++++..+..+.++++++|+
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~-----~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl   77 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHD-----SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGL   77 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHH-----TTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTC
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-----CCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHHcCC
Confidence            35799999999999999999999     999999999999999999999985 899999999999877778889999998


Q ss_pred             CCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCC
Q 043512           99 KPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETR  178 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (487)
                      .........  ..+.+.+|..+.+....+.. +   ..    ...           ..+.+++.    .+..+...+...
T Consensus        78 ~~~~~~~~~--~~~~~~~g~~~~~~~~~p~~-~---~~----~~~-----------~~~~~~~~----~~~~~~~~~~~~  132 (520)
T 1s3e_A           78 ETYKVNEVE--RLIHHVKGKSYPFRGPFPPV-W---NP----ITY-----------LDHNNFWR----TMDDMGREIPSD  132 (520)
T ss_dssp             CEEECCCSS--EEEEEETTEEEEECSSSCCC-C---SH----HHH-----------HHHHHHHH----HHHHHHTTSCTT
T ss_pred             cceecccCC--ceEEEECCEEEEecCCCCCC-C---CH----HHH-----------HHHHHHHH----HHHHHHhhcCcC
Confidence            754322211  12444566555543211100 0   00    000           00111111    111111111111


Q ss_pred             CCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhc-----------CC
Q 043512          179 PVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAG-----------SG  246 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-----------~~  246 (487)
                      .++..       .........++.+|+.+...++.. +.++..+....++.+. ++++...+..+..           ..
T Consensus       133 ~~~~~-------~~~~~~~~~s~~~~l~~~~~~~~~-~~~~~~~~~~~~g~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~  204 (520)
T 1s3e_A          133 APWKA-------PLAEEWDNMTMKELLDKLCWTESA-KQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNG  204 (520)
T ss_dssp             CGGGS-------TTHHHHHTSBHHHHHHHHCSSHHH-HHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTS
T ss_pred             CCccc-------cchhhhhccCHHHHHHhhCCCHHH-HHHHHHHHhhhcCCChHHhHHHHHHHHHhhcCchhhhcccCCC
Confidence            11110       011124568999999988876655 4566666666677665 5676543222111           11


Q ss_pred             CCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-CeeecCCCC
Q 043512          247 GGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPIS  320 (487)
Q Consensus       247 ~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l~p~~~  320 (487)
                      ...+++.||+++++++|++.+|++|++|++|++|..+++++.|++.+|+++.||+||+|+|+... .+.+.|++|
T Consensus       205 ~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~l~~~p~lp  279 (520)
T 1s3e_A          205 GQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLP  279 (520)
T ss_dssp             TTSEEETTCTHHHHHHHHHHHGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCCC
T ss_pred             cceEEEeCCHHHHHHHHHHHcCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHHHcceeeCCCCC
Confidence            23578999999999999999999999999999999888888899999989999999999999975 355667664

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.94  E-value=3.3e-26  Score=231.61  Aligned_cols=372  Identities=13%  Similarity=0.142  Sum_probs=210.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEec--CChhHHHHHHHcCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHP--KNYHTVNFTKLLNLK   99 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~--~~~~~~~~~~~lgl~   99 (487)
                      +||+|||||++||+||++|++     +|++|+|+||++++||+++++..+|+.+|.|++++..  ....+.++++++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~-----~G~~V~vlE~~~~~GG~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~l~~~lg~~   75 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLAR-----NGHEIIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGEDGPLAHLLRILGAK   75 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH-----TTCEEEEECSSSSSCTTSSEEEETTEEEESSSCSEETTTTSSHHHHHHHHHTCC
T ss_pred             CcEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCceeEEeccCCEEEecCCeEEEccCCChHHHHHHHHhCCc
Confidence            589999999999999999999     9999999999999999999999999999999977654  344677899999886


Q ss_pred             CCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          100 PKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ......... . ..+++|..+.+..           ....+...         +...+..                    
T Consensus        76 ~~~~~~~~~-~-~~~~~g~~~~~~~-----------~~~~l~~~---------~~~~~~~--------------------  113 (421)
T 3nrn_A           76 VEIVNSNPK-G-KILWEGKIFHYRE-----------SWKFLSVK---------EKAKALK--------------------  113 (421)
T ss_dssp             CCEEECSSS-C-EEEETTEEEEGGG-----------GGGGCC-----------------C--------------------
T ss_pred             ceEEECCCC-e-EEEECCEEEEcCC-----------chhhCCHh---------HHHHHHH--------------------
Confidence            432211111 1 2333554433311           00000000         0000000                    


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch--HHHHHhhhcCCCCceEeecch
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG--LAGAVSLAGSGGGLWAVEGGN  256 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~~~~~~~g~~~~~gG~  256 (487)
                         ......  .........++.+|+.+.++.....+.++..+....++.+. ++++  +...+.......+.++++||+
T Consensus       114 ---~~~~~~--~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~gG~  188 (421)
T 3nrn_A          114 ---LLAEIR--MNKLPKEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALRWGGPGLIRGGC  188 (421)
T ss_dssp             ---CHHHHH--TTCCCCCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHHCSCEEETTCH
T ss_pred             ---HHHHHH--hccCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhhcCCcceecCCH
Confidence               000000  00011123677888887755555555666666666666554 5665  344333322345788999999


Q ss_pred             HHHHHHHHHh---cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCCeeec-CCCCC----CCcCeEE
Q 043512          257 WQMAAGLINR---SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELNLHFS-PPISI----PERKLQH  328 (487)
Q Consensus       257 ~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~~~l~-p~~~~----~~~~~~~  328 (487)
                      +.++++|++.   .|++|+++++|++|..+++++ | +.+|+++.||.||+|+|++.....+. +..+.    ...++++
T Consensus       189 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V-~~~g~~~~ad~Vv~a~~~~~~~~ll~~~~~~~~~~~~~~~~~~  266 (421)
T 3nrn_A          189 KAVIDELERIIMENKGKILTRKEVVEINIEEKKV-Y-TRDNEEYSFDVAISNVGVRETVKLIGRDYFDRDYLKQVDSIEP  266 (421)
T ss_dssp             HHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-E-ETTCCEEECSEEEECSCHHHHHHHHCGGGSCHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-E-EeCCcEEEeCEEEECCCHHHHHHhcCcccCCHHHHHHHhCCCC
Confidence            9999999874   499999999999999888888 6 45677999999999999986543221 11221    0122333


Q ss_pred             EEEEEeeCCcCcccccCCCCCCCCceeEeccCCCCCeeEeeeccccC----C-CCcEEEec---cCC------CCCHHHH
Q 043512          329 THATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCISVLKQHD----E-NDFTYKIF---SRK------PMTDTLL  394 (487)
Q Consensus       329 ~~~~~~~~~l~~~y~g~~~~~~~~~~i~~~~~~~~~~~~i~~~~~~~----~-~~~~~~~~---s~~------~l~~~~l  394 (487)
                      + +.++      .+++++........++....+.  +..+.+....+    + +..+..+.   ...      +...++|
T Consensus       267 ~-~~~~------v~l~~~~~~~~~~~~~~~~~~~--~~~i~~~s~~~p~~ap~G~~~~~~~~~~~~~~~~~~~~~~~~~L  337 (421)
T 3nrn_A          267 S-EGIK------FNLAVPGEPRIGNTIVFTPGLM--INGFNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWEEL  337 (421)
T ss_dssp             C-CEEE------EEEEEESSCSSCSSEEECTTSS--SCEEECGGGTCGGGSCTTEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             C-ceEE------EEEEEcCCcccCCeEEEcCCcc--eeeEeccCCCCCCcCCCCceEEEEEEeeccccHHHHHHHHHHHH
Confidence            3 3333      4566655421111232211122  33333322221    1 22222111   111      1225788


Q ss_pred             hhhcccCCceEEEecc-CCCCCCCCC-CCCCceeeCCceeeecchhhhH--HHHhHHHHHHHHHHHHH
Q 043512          395 DDIFSVRKETIRINWG-AYPHYKAPE-VFAPFILDGRHLYYVNAFENAA--STMETSAVAAENVARLI  458 (487)
Q Consensus       395 ~~~f~~~~~~~~~~w~-~yp~~~~~~-~~~p~~l~g~~~~~~~~~~~~~--s~~~~~~~~g~~~a~~i  458 (487)
                      .++|+.........|. ++|.++.+. .-.+ ... +++|++...-...  -.||++..||+++|+.|
T Consensus       338 ~~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~-~gl~laGd~~~~~~g~~~~ga~~sg~~aA~~l  403 (421)
T 3nrn_A          338 LEIFPEGEPLLAQVYRDGNPVNRTRAGLHIE-WPL-NEVLVVGDGYRPPGGIEVDGIALGVMKALEKL  403 (421)
T ss_dssp             HHHCTTCEEEEEEEC-------------CCC-CCC-SSEEECSTTCCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCCeEEEeeeccCCCCcccccCCCCCC-CCC-CcEEEECCcccCCCceeeehHHHHHHHHHHHh
Confidence            8888732222334453 445333221 1112 223 5677663111112  26799999999999988

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.94  E-value=3.5e-25  Score=226.24  Aligned_cols=261  Identities=18%  Similarity=0.198  Sum_probs=172.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      .+||+|||||++||+||+.|++     .|++|+|+|+++++||++++...+|+.+|.|++++......+.++++++|+..
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~g~~~   79 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRK-----AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKT   79 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTTCCEEEETTEEEECSCCCBCTTCHHHHHHHHHTTCCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEECCCCCCCceeccccCCceeccCCeEecCccHHHHHHHHHcCCcc
Confidence            4799999999999999999999     99999999999999999999998999999999998877777778999999865


Q ss_pred             CCCCCCCCCceEEEEc-CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCC
Q 043512          101 KDPPSSEDSTAFGIWD-GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRP  179 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (487)
                      ........  .+.+.+ |..+.+....+    .+..  ....+              +..+..    .+..+...+....
T Consensus        80 ~~~~~~~~--~~~~~~~g~~~~~~~~~~----~~~~--~~~~~--------------~~~~~~----~~~~~~~~~~~~~  133 (453)
T 2yg5_A           80 FERYREGE--SVYISSAGERTRYTGDSF----PTNE--TTKKE--------------MDRLID----EMDDLAAQIGAEE  133 (453)
T ss_dssp             EECCCCSE--EEEECTTSCEEEECSSSC----SCCH--HHHHH--------------HHHHHH----HHHHHHHHHCSSC
T ss_pred             cccccCCC--EEEEeCCCceeeccCCCC----CCCh--hhHHH--------------HHHHHH----HHHHHHhhcCCCC
Confidence            33322111  122333 44444421100    0000  00000              011111    1111111110011


Q ss_pred             CCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC--CcchHHHHHhhhcC----------CC
Q 043512          180 VFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL--SISGLAGAVSLAGS----------GG  247 (487)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~----------~~  247 (487)
                      .+..       .........++.+|+.+...++.+. .++..+....|+.+.  ++++...+......          ..
T Consensus       134 ~~~~-------~~~~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~~~  205 (453)
T 2yg5_A          134 PWAH-------PLARDLDTVSFKQWLINQSDDAEAR-DNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFI  205 (453)
T ss_dssp             GGGS-------TTHHHHHSSBHHHHHHHHCSCHHHH-HHHHHHHCCCCCCSCTTSSBHHHHHHHHHHTTCHHHHHCHHHH
T ss_pred             CCCC-------cchhhhhhccHHHHHHhhcCCHHHH-HHHHHHHHhhcccCCcccccHHHHHHHhccCCcHhhhccCCCc
Confidence            1111       0112245688999999887766554 455666655566543  56665433222111          01


Q ss_pred             CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCCCC-eeecCCCCC
Q 043512          248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDELN-LHFSPPISI  321 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~~~-~~l~p~~~~  321 (487)
                      ..++++||+++++++|++.+|++|++|++|++|..++++ +.|++ +|+++.||+||+|+|+.... +.+.|++|.
T Consensus       206 ~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~ad~VI~a~p~~~~~~l~~~p~lp~  280 (453)
T 2yg5_A          206 LDKRVIGGMQQVSIRMAEALGDDVFLNAPVRTVKWNESGATVLAD-GDIRVEASRVILAVPPNLYSRISYDPPLPR  280 (453)
T ss_dssp             TCEEETTCTHHHHHHHHHHHGGGEECSCCEEEEEEETTEEEEEET-TTEEEEEEEEEECSCGGGGGGSEEESCCCH
T ss_pred             ceEEEcCChHHHHHHHHHhcCCcEEcCCceEEEEEeCCceEEEEE-CCeEEEcCEEEEcCCHHHHhcCEeCCCCCH
Confidence            257899999999999999999999999999999999888 88877 67789999999999998653 456666653

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.93  E-value=5.3e-25  Score=227.98  Aligned_cols=251  Identities=15%  Similarity=0.231  Sum_probs=163.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      .+.+||+|||||++||+||+.|++     +|++|+|+|+++++||++++...+|+.+|.|+++++..+..+.++++++|+
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~lgl   85 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKI-----HGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGL   85 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHT-----TSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-----CCCcEEEEEeCCCCCCceeeeccCCeEEecCCcccccCcHHHHHHHHHcCC
Confidence            346899999999999999999999     999999999999999999999999999999999998877778899999998


Q ss_pred             CCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           99 KPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ............++.+.+|..+.+..    +...+       .       +... +.   .       .++......+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~g~~~~~p~----~~~~~-------~-------~~~~~~~---~-------~~~~~~~~~~~~  137 (504)
T 1sez_A           86 REKQQFPLSQNKRYIARNGTPVLLPS----NPIDL-------I-------KSNFLST---G-------SKLQMLLEPILW  137 (504)
T ss_dssp             GGGEECCSSCCCEEEESSSSEEECCS----SHHHH-------H-------HSSSSCH---H-------HHHHHHTHHHHC
T ss_pred             cccceeccCCCceEEEECCeEEECCC----CHHHH-------h-------ccccCCH---H-------HHHHHhHhhhcc
Confidence            65332221112234455665444321    11000       0       0000 00   0       000000000000


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH--HHhh------------
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG--AVSL------------  242 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--~~~~------------  242 (487)
                      ..  .....       ......++.+|+.+. +...+.+.++.++....|+.+. ++++...  .++.            
T Consensus       138 ~~--~~~~~-------~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~  207 (504)
T 1sez_A          138 KN--KKLSQ-------VSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGA  207 (504)
T ss_dssp             -------------------CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHH
T ss_pred             Cc--ccccc-------cCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHH
Confidence            00  00000       011346788888765 4456666666666666666554 4543211  0100            


Q ss_pred             ----hc-----------------CCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCE------EEEEEc--
Q 043512          243 ----AG-----------------SGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREY------YELNST--  292 (487)
Q Consensus       243 ----~~-----------------~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~------v~V~~~--  292 (487)
                          ..                 ...+.++++||+++|+++|++.++ ++|++|++|++|..++++      +.|++.  
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~  287 (504)
T 1sez_A          208 IRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASP  287 (504)
T ss_dssp             HHHTTC----------CCCSCCSTTCSCBEETTCTHHHHHHHHTTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCS
T ss_pred             HHhhhcccccccccccchhhccccCCceEeeCcHHHHHHHHHHhhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCC
Confidence                00                 112578999999999999999987 899999999999988776      766654  


Q ss_pred             cC---ceEecCEEEEccCCCCCC
Q 043512          293 KG---NSYTCQITVVATPLDELN  312 (487)
Q Consensus       293 ~G---~~~~ad~VV~a~~~~~~~  312 (487)
                      +|   +++.||+||+|+|+..+.
T Consensus       288 ~g~~~~~~~ad~VI~a~p~~~l~  310 (504)
T 1sez_A          288 HKRQSEEESFDAVIMTAPLCDVK  310 (504)
T ss_dssp             SSSCBCCCEESEEEECSCHHHHH
T ss_pred             CCccceeEECCEEEECCCHHHHH
Confidence            45   578999999999998653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.93  E-value=1e-24  Score=223.63  Aligned_cols=252  Identities=15%  Similarity=0.206  Sum_probs=165.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC------CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHH
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH------PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTK   94 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G------~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~   94 (487)
                      ++||+|||||++||+||++|++     +|      ++|+|||+++++||++++...+|+.+|.|++++...+..+.++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~-----~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~g~~~d~G~~~~~~~~~~~~~l~~   79 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEK-----EIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVK   79 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-----HHTTTTCSEEEEEECSSSSSCTTCCEECCTTCCEESSCCCEETTCTHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----hccccCCCCCEEEEECCCCCCceEEEeccCCEEeccChhhhhhCCHHHHHHHH
Confidence            5799999999999999999999     88      999999999999999999999999999999999888888889999


Q ss_pred             HcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhh
Q 043512           95 LLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYES  174 (487)
Q Consensus        95 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ++|+........ ....+.+.+|....+..   +....++..+..+.       +..     +...    ..++....  
T Consensus        80 ~lgl~~~~~~~~-~~~~~~~~~g~~~~~~~---~~~~~~p~~~~~~~-------~~~-----~~~~----~~~~~~~~--  137 (470)
T 3i6d_A           80 DLGLEHLLVNNA-TGQSYVLVNRTLHPMPK---GAVMGIPTKIAPFV-------STG-----LFSL----SGKARAAM--  137 (470)
T ss_dssp             HTTCCTTEEECC-CCCEEEECSSCEEECCC----------------------------------------CCSHHHHH--
T ss_pred             HcCCcceeecCC-CCccEEEECCEEEECCC---CcccCCcCchHHhh-------ccC-----cCCH----HHHHHHhc--
Confidence            999876443110 11123344454333311   00000000000000       000     0000    00000000  


Q ss_pred             ccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhc---------
Q 043512          175 FETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAG---------  244 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~---------  244 (487)
                                 +.+. .........++.+|+.+. +...+.+.++..+....|+.+. +++....+-.+..         
T Consensus       138 -----------~~~~-~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  204 (470)
T 3i6d_A          138 -----------DFIL-PASKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLI  204 (470)
T ss_dssp             -----------HHHS-CCCSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC---------
T ss_pred             -----------Cccc-CCCCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHH
Confidence                       0000 011123456788888774 4466666677777777787665 4554322111100         


Q ss_pred             ------------------CCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEc
Q 043512          245 ------------------SGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVA  305 (487)
Q Consensus       245 ------------------~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a  305 (487)
                                        .....+++++|++.++++|++.++ ++|+++++|++|..+++++.|++.+|+++.||+||+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a  284 (470)
T 3i6d_A          205 LGMKKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVT  284 (470)
T ss_dssp             ----------------------EEEETTCTHHHHHHHHHTCCSEEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEEC
T ss_pred             HHHHhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCCCEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEEC
Confidence                              012356899999999999999876 7999999999999988889999999988999999999


Q ss_pred             cCCCCCC
Q 043512          306 TPLDELN  312 (487)
Q Consensus       306 ~~~~~~~  312 (487)
                      +|++...
T Consensus       285 ~p~~~~~  291 (470)
T 3i6d_A          285 APHKAAA  291 (470)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            9998753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.93  E-value=4.3e-26  Score=236.67  Aligned_cols=249  Identities=13%  Similarity=0.126  Sum_probs=147.6

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEE-eeCCeEecccceeEecCChhHHHHH
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATV-TISGQTFEAGASILHPKNYHTVNFT   93 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~   93 (487)
                      |+..++.+||||||||++||+||++|++.    .|++|+|||+++++||+++|. ..+|+.+|.|+++++..++.+.+++
T Consensus         4 Ms~p~~~~DVvIIGaGisGLsaA~~L~k~----~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~   79 (513)
T 4gde_A            4 MTHPDISVDVLVIGAGPTGLGAAKRLNQI----DGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCL   79 (513)
T ss_dssp             --CCSEEEEEEEECCSHHHHHHHHHHHHH----CCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHH
T ss_pred             CCCCCCCCCEEEECCcHHHHHHHHHHHhh----CCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHH
Confidence            55556678999999999999999999872    499999999999999999986 4679999999999998888888898


Q ss_pred             HHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512           94 KLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE  173 (487)
Q Consensus        94 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      ++++........... ....+.+|+.+.+.         +...+..+...            ..................
T Consensus        80 ~e~~~~~~~~~~~~~-~~~i~~~g~~~~~p---------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~  137 (513)
T 4gde_A           80 DEALPKEDDWYTHQR-ISYVRCQGQWVPYP---------FQNNISMLPKE------------EQVKCIDGMIDAALEARV  137 (513)
T ss_dssp             HHHSCSGGGEEEEEC-CEEEEETTEEEESS---------GGGGGGGSCHH------------HHHHHHHHHHHHHHHHHT
T ss_pred             HHhCCccceeEEecC-ceEEEECCeEeecc---------hhhhhhhcchh------------hHHHHHHHHHHHHHhhhc
Confidence            888754332211111 11334455443331         00000000000            000001111111000000


Q ss_pred             hccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH-----------HH---
Q 043512          174 SFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL-----------AG---  238 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~-----------~~---  238 (487)
                         .....                 .++.+|+.+. +.+.+.+.++..++...++.+. .+++-           ..   
T Consensus       138 ---~~~~~-----------------~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~  196 (513)
T 4gde_A          138 ---ANTKP-----------------KTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTT  196 (513)
T ss_dssp             ---CCSCC-----------------CSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHH
T ss_pred             ---ccccc-----------------cCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhh
Confidence               11112                 2333333221 1123333344455555555443 22221           00   


Q ss_pred             -HHhh-hcC----C-CCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          239 -AVSL-AGS----G-GGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       239 -~~~~-~~~----~-~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                       .+.. ...    . ...+.++||+++++++|++.+   |++|+++++|++|..++++  |++.+|+++.||+||+|+|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          197 NVILGKTAGNWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             HHHHTCCCCSCBTTBEEEEESSSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEEEEEEEECSCH
T ss_pred             hhhhcccccccccccceeecccCCHHHHHHHHHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEECCEEEECCCH
Confidence             0100 000    1 113456899999999998864   8999999999999987765  45689999999999999998


Q ss_pred             CCCC
Q 043512          309 DELN  312 (487)
Q Consensus       309 ~~~~  312 (487)
                      ..+.
T Consensus       275 ~~l~  278 (513)
T 4gde_A          275 DFLA  278 (513)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.93  E-value=3.5e-24  Score=217.35  Aligned_cols=254  Identities=17%  Similarity=0.214  Sum_probs=163.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC---CeEecccceeEecC-ChhHHHHHHHcC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS---GQTFEAGASILHPK-NYHTVNFTKLLN   97 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~---g~~~d~G~~~~~~~-~~~~~~~~~~lg   97 (487)
                      +||||||||++|++||+.|++     .|++|+|+|+++++||++.+...+   |..+|.|+++++.. ...+.++++++|
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~-----~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~~g   76 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN-----AGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDRYG   76 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-----TTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHHHT
T ss_pred             CCEEEECCcHHHHHHHHHHHH-----cCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHHhC
Confidence            699999999999999999999     999999999999999999998887   99999999999887 777778888898


Q ss_pred             CCCCCCCCCCCCceEEE-EcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhcc
Q 043512           98 LKPKDPPSSEDSTAFGI-WDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFE  176 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (487)
                      +..........   ..+ ..+..+..     .  .......   .                 ..+.....++......+.
T Consensus        77 ~~~~~~~~~~~---~~~~~~~~~~~~-----~--~~~~~~~---~-----------------~~~~~~~~~l~~~~~~~~  126 (431)
T 3k7m_X           77 IPTAAASEFTS---FRHRLGPTAVDQ-----A--FPIPGSE---A-----------------VAVEAATYTLLRDAHRID  126 (431)
T ss_dssp             CCEEECCCCCE---ECCBSCTTCCSS-----S--SCCCGGG---H-----------------HHHHHHHHHHHHHHTTCC
T ss_pred             CeeeecCCCCc---EEEEecCCeecC-----C--CCCCHHH---H-----------------HHHHHHHHHHHHHHHhcC
Confidence            86433221110   111 11111110     0  0000000   0                 000111111111111111


Q ss_pred             CCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhhhcC--------CC
Q 043512          177 TRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSLAGS--------GG  247 (487)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~--------~~  247 (487)
                      ...++..       ....... .++.+++...+..+... .+........++.++ +++....+..+...        ..
T Consensus       127 ~~~~~~~-------~~~~~~d-~s~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  197 (431)
T 3k7m_X          127 LEKGLEN-------QDLEDLD-IPLNEYVDKLDLPPVSR-QFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLS  197 (431)
T ss_dssp             TTTCTTS-------SSCGGGC-SBHHHHHHHHTCCHHHH-HHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHT
T ss_pred             CCCCccC-------cchhhhc-CCHHHHHHhcCCCHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecc
Confidence            1000100       1122333 77888888877766543 344445555566665 35543322111110        11


Q ss_pred             CceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-CeeecCCCC
Q 043512          248 GLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPIS  320 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l~p~~~  320 (487)
                      ....+.+|+.+++++++++.| +|+++++|++|..+++++.|++.+|++++||+||+|+|+... .+.+.|+++
T Consensus       198 ~~~~~~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~  270 (431)
T 3k7m_X          198 LDEVFSNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALP  270 (431)
T ss_dssp             CCEEETTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGGGGGGSEEESCCC
T ss_pred             hhhhcCCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcchHhheeeCCCCC
Confidence            122679999999999999888 999999999999888889999999988999999999999865 355777764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.92  E-value=2.6e-24  Score=217.91  Aligned_cols=236  Identities=15%  Similarity=0.105  Sum_probs=154.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEec--CChhHHHHHHHcCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHP--KNYHTVNFTKLLNLK   99 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~--~~~~~~~~~~~lgl~   99 (487)
                      +||+|||||++||+||++|++     +|++|+||||++++||+++++..+|+.+|.|++++..  ....+.++++++|+.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~-----~G~~V~vlE~~~~~GG~~~~~~~~G~~~d~G~~~~~~~~~~~~~~~l~~~lg~~   75 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK-----AGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHMLPNGPGGPLACFLKEVEAS   75 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH-----TTCEEEEECSSSSSBTTSSEEEETTEEEESSSCSCBTTGGGSHHHHHHHHTTCC
T ss_pred             CcEEEECCCHHHHHHHHHHHh-----CCCceEEEeCCCCCCCceeeeccCCcEEcCCCceEecCCCccHHHHHHHHhCCC
Confidence            589999999999999999999     9999999999999999999999999999999876543  234567899999976


Q ss_pred             CCCCCCCCCCceEEEE-c---------CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHH
Q 043512          100 PKDPPSSEDSTAFGIW-D---------GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFL  169 (487)
Q Consensus       100 ~~~~~~~~~~~~~~~~-~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (487)
                      .........  ...+. +         +..+.+           .. .....           +.....++.    ..+.
T Consensus        76 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~-~~~~~-----------~~~~~~~~~----~~~~  126 (425)
T 3ka7_A           76 VNIVRSEMT--TVRVPLKKGNPDYVKGFKDISF-----------ND-FPSLL-----------SYKDRMKIA----LLIV  126 (425)
T ss_dssp             CCEEECCCC--EEEEESSTTCCSSTTCEEEEEG-----------GG-GGGGS-----------CHHHHHHHH----HHHH
T ss_pred             ceEEecCCc--eEEeecCCCcccccccccceeh-----------hh-hhhhC-----------CHHHHHHHH----HHHH
Confidence            432221111  11111 0         111111           00 00000           000000000    0000


Q ss_pred             HhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch--HHHHHhhhcCC
Q 043512          170 KYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG--LAGAVSLAGSG  246 (487)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~--~~~~~~~~~~~  246 (487)
                      ....                    ......++.+|+.+..- ....+.++..+....++.+. .+++  +...+......
T Consensus       127 ~~~~--------------------~~~~~~s~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~  185 (425)
T 3ka7_A          127 STRK--------------------NRPSGSSLQAWIKSQVS-DEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMYRF  185 (425)
T ss_dssp             HTTT--------------------SCCCSSBHHHHHHHHCC-CHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHHH
T ss_pred             hhhh--------------------cCCCCCCHHHHHHHhcC-CHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHhc
Confidence            0000                    01124567777776533 44444555566655566554 4665  33333332234


Q ss_pred             CCceEeecchHHHHHHHHHh---cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCe
Q 043512          247 GGLWAVEGGNWQMAAGLINR---SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNL  313 (487)
Q Consensus       247 ~g~~~~~gG~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~  313 (487)
                      .+.+++.||++.++++|++.   .|++|+++++|++|..+++++ +|++. |+++.||.||+|+|++.+..
T Consensus       186 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~  255 (425)
T 3ka7_A          186 GGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAV  255 (425)
T ss_dssp             CSCEEETTSHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHH
T ss_pred             CCccccCCCHHHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHH
Confidence            57889999999999999774   599999999999999998887 47775 77899999999999987643

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.91  E-value=3.2e-24  Score=222.59  Aligned_cols=246  Identities=20%  Similarity=0.216  Sum_probs=145.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCccceeEEEee-CCeEecccceeEecC-ChhHHHHHHHcC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPK-NYHTVNFTKLLN   97 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~-~~~~~~~~~~lg   97 (487)
                      .+||||||||++||+||+.|++     +| ++|+|||+++++|||++|... +|+.+|+|++|++.. ...+..+...++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~-----~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~lg   82 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQ-----NGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQLS   82 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHH-----TTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-----cCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHHhC
Confidence            4799999999999999999999     99 999999999999999999887 799999999999865 334445666666


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      +.....       .+.+.++..+.+..+.  ..  +...                ....+..+.+.....+....... .
T Consensus        83 ~~~~~~-------~~~~~~~~~~~~~~~~--~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~-~  134 (516)
T 1rsg_A           83 LNDGRT-------RFVFDDDNFIYIDEER--GR--VDHD----------------KELLLEIVDNEMSKFAELEFHQH-L  134 (516)
T ss_dssp             HHHCCC-------CEECCCCCCEEEETTT--EE--CTTC----------------TTTCHHHHHHHHHHHHHHHC-----
T ss_pred             CCCcce-------eEEECCCCEEEEcCCC--cc--cccc----------------HHHHHHHHHHHHHHHHHHHhhhc-c
Confidence            522111       0222233333332110  00  0000                00001111111111111110000 0


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHH------cCCCHHHHHHHHHHH---HHhhcCCCC-CcchHHHHHhhhcCCC
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELID------ARLSPLLMQELVTII---TRINYGQSL-SISGLAGAVSLAGSGG  247 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~---~~~~~g~~~-~~~~~~~~~~~~~~~~  247 (487)
                                       ...+.++.+++.+      ..+.+... .+...+   ....+|.+. .+++.+.+.   ....
T Consensus       135 -----------------~~~d~s~~~~l~~~l~~~~~~l~~~~~-~~~~~~~~~~~~~~g~~~~~~s~~~~~~---~~~~  193 (516)
T 1rsg_A          135 -----------------GVSDCSFFQLVMKYLLQRRQFLTNDQI-RYLPQLCRYLELWHGLDWKLLSAKDTYF---GHQG  193 (516)
T ss_dssp             --------------------CCBHHHHHHHHHHHHGGGSCHHHH-HHHHHHHGGGHHHHTBCTTTSBHHHHCC---CCSS
T ss_pred             -----------------CCCCCCHHHHHHHHHHHhhcccCHHHH-HHHHHHHHHHHHHhCCChHHCChHHHHh---hccC
Confidence                             0011222222211      11111111 111111   122234444 355443221   1222


Q ss_pred             CceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEe-CCEEEEEEccCceEecCEEEEccCCCCC------------Ce
Q 043512          248 GLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYL-REYYELNSTKGNSYTCQITVVATPLDEL------------NL  313 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~-~~~v~V~~~~G~~~~ad~VV~a~~~~~~------------~~  313 (487)
                      ..+++.| +++++++|++.++ ++|++|++|++|..+ ++++.|++.+|+++.||+||+|+|+..+            .+
T Consensus       194 ~~~~~~g-~~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~ad~VI~t~p~~~l~~~~~~~~~~~~~i  272 (516)
T 1rsg_A          194 RNAFALN-YDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVLNLSVQPEKNLRGRI  272 (516)
T ss_dssp             CCEEESC-HHHHHHHHHTTSCGGGEETTCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCCHHHHHGGGSSCSCSTTCC
T ss_pred             cchhhhC-HHHHHHHHHHhCCCCEEEECCEEEEEEEcCCCeEEEEECCCcEEECCEEEECCCHHHhhhccccccccccce
Confidence            3456777 9999999998874 689999999999986 5678999999988999999999999865            37


Q ss_pred             eecCCCCC
Q 043512          314 HFSPPISI  321 (487)
Q Consensus       314 ~l~p~~~~  321 (487)
                      .|.|++|.
T Consensus       273 ~f~P~Lp~  280 (516)
T 1rsg_A          273 EFQPPLKP  280 (516)
T ss_dssp             EEESCCCH
T ss_pred             EecCCCCH
Confidence            88888754

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.91  E-value=1.1e-23  Score=216.51  Aligned_cols=253  Identities=19%  Similarity=0.208  Sum_probs=167.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      ++||+|||||++||+||++|++     +|  ++|+|+|+++++||++++...+|+.+|.|++++...+..+.++++++|+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~-----~g~~~~v~v~E~~~~~GG~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~lg~   78 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAER-----AFPDLNITLLEAGERLGGKVATYREDGFTIERGPDSYVARKHILTDLIEAIGL   78 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHH-----HCTTSEEEEECSSSSSBTTCCEECSTTCCEESSCCCEETTSTHHHHHHHHTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHH-----hCCCCCEEEEECCCCCCceeEEEeeCCEEEecCchhhhcccHHHHHHHHHcCC
Confidence            5799999999999999999999     88  9999999999999999999999999999999998888888899999998


Q ss_pred             CCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC-ChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           99 KPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL-SLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ........ ....+.+.+|....+..   +....++..+..+       .+... +..  .++   ....+.   .   .
T Consensus        79 ~~~~~~~~-~~~~~~~~~g~~~~~p~---~~~~~~p~~~~~~-------~~~~~~~~~--~~~---~~~~~~---~---~  136 (475)
T 3lov_A           79 GEKLVRNN-TSQAFILDTGGLHPIPK---GAVMGIPTDLDLF-------RQTTLLTEE--EKQ---EVADLL---L---H  136 (475)
T ss_dssp             GGGEEECC-CCCEEEEETTEEEECCS---SEETTEESCHHHH-------TTCSSSCHH--HHH---HHHHHH---H---S
T ss_pred             cceEeecC-CCceEEEECCEEEECCC---cccccCcCchHHH-------hhccCCChh--HHH---HhhCcc---c---C
Confidence            75432211 11124445554443321   1000011100000       00000 000  000   000000   0   0


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHH---HHHh----------h-
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLA---GAVS----------L-  242 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~---~~~~----------~-  242 (487)
                      ..   .       .........++.+|+.+. +...+.+.++..+....|+.+. ++++..   .+..          . 
T Consensus       137 ~~---~-------~~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~  205 (475)
T 3lov_A          137 PS---D-------SLRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGM  205 (475)
T ss_dssp             CC---T-------TCCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHH
T ss_pred             Cc---c-------cccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHH
Confidence            00   0       000123456788888763 4466667777778877887665 354321   1110          0 


Q ss_pred             --hc--------------CCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEc
Q 043512          243 --AG--------------SGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVA  305 (487)
Q Consensus       243 --~~--------------~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a  305 (487)
                        ..              .....++++||++.++++|++.++ ++|+++++|++|..+++++.|++.+| ++.||+||+|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a  284 (475)
T 3lov_A          206 RLMRPLDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLERSEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLT  284 (475)
T ss_dssp             HHTCC--------------CCSEEEETTCHHHHHHHHHHHCSSCEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEEC
T ss_pred             HHhcccccccccccccccCCCcEEeeCChHHHHHHHHHhhccCCEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEEC
Confidence              00              022356899999999999999886 89999999999999999999999999 8999999999


Q ss_pred             cCCCCCC
Q 043512          306 TPLDELN  312 (487)
Q Consensus       306 ~~~~~~~  312 (487)
                      +|++...
T Consensus       285 ~p~~~~~  291 (475)
T 3lov_A          285 IPHPQVV  291 (475)
T ss_dssp             SCHHHHH
T ss_pred             CCHHHHH
Confidence            9998753

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.91  E-value=9.3e-24  Score=213.79  Aligned_cols=248  Identities=17%  Similarity=0.227  Sum_probs=165.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      ++.+||+|||||++||+||++|++     .| ++|+|+|+++++||+++|...+|+.+|.|++++...+..+.++++++|
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~-----~g~~~v~v~E~~~~~GG~~~t~~~~G~~~d~G~~~~~~~~~~~~~l~~~~g   78 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQ-----AGFHDYTILERTDHVGGKCHSPNYHGRRYEMGAIMGVPSYDTIQEIMDRTG   78 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHH-----TTCCCEEEECSSSCSSTTCCCCEETTEECCSSCCCBCTTCHHHHHHHHHHC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHh-----CCCCcEEEEECCCCCCCcccccCCCCcccccCceeecCCcHHHHHHHHHhC
Confidence            356899999999999999999999     99 999999999999999999999999999999998877778889999999


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      +.......   ...+.+.+|.....    ..+.....    .+.   ..          +.++    ...+...+..+..
T Consensus        79 ~~~~~~~~---~~~~~~~~g~~~~~----~~~~~~~~----~~~---~~----------~~~l----~~~~~~~~~~~~~  130 (424)
T 2b9w_A           79 DKVDGPKL---RREFLHEDGEIYVP----EKDPVRGP----QVM---AA----------VQKL----GQLLATKYQGYDA  130 (424)
T ss_dssp             CCCCSCCC---CEEEECTTSCEECG----GGCTTHHH----HHH---HH----------HHHH----HHHHHTTTTTTTS
T ss_pred             Cccccccc---cceeEcCCCCEecc----ccCcccch----hHH---HH----------HHHH----HHHHhhhhhhccc
Confidence            86543211   11122234432210    00000000    000   00          0000    0001111111100


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhc-------CCCCce
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAG-------SGGGLW  250 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~g~~  250 (487)
                      ...+..         .......++.+|+.+.+.+. +.+.+..++....|+.+.++++++.+ .+..       ...+.+
T Consensus       131 ~~~~~~---------~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~  199 (424)
T 2b9w_A          131 NGHYNK---------VHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGYGHFDNVPAAYVL-KYLDFVTMMSFAKGDLW  199 (424)
T ss_dssp             SSSSSC---------CCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCCCCTTTSBHHHHH-HHSCHHHHHHHHHTCCB
T ss_pred             ccchhh---------hhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhccCChHhcCHHHHH-HhhhHhhhhcccCCceE
Confidence            000110         11234578999999887753 54444444455556655567775532 1111       124577


Q ss_pred             EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          251 AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       251 ~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+.+|+++++++|.+.++.+|+++++|++|..+++++.|++.+| ++.||+||+|+|++..
T Consensus       200 ~~~~g~~~l~~~l~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g-~~~ad~Vv~a~~~~~~  259 (424)
T 2b9w_A          200 TWADGTQAMFEHLNATLEHPAERNVDITRITREDGKVHIHTTDW-DRESDVLVLTVPLEKF  259 (424)
T ss_dssp             CCTTCHHHHHHHHHHHSSSCCBCSCCEEEEECCTTCEEEEESSC-EEEESEEEECSCHHHH
T ss_pred             EeCChHHHHHHHHHHhhcceEEcCCEEEEEEEECCEEEEEECCC-eEEcCEEEECCCHHHH
Confidence            89999999999999999889999999999998888888999888 5999999999999864

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.91  E-value=1.9e-23  Score=214.89  Aligned_cols=253  Identities=18%  Similarity=0.206  Sum_probs=168.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNL   98 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl   98 (487)
                      ...+||+|||||++||+||+.|++     +|++|+|+|+++++|||++|...+|+.+|.|++++...+..+.++++++|+
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~-----~g~~v~v~E~~~~~GGr~~t~~~~g~~~~~g~~~~~~~~~~~~~~~~~~gl   88 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRS-----RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNL   88 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHT-----TTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEEcCCCCCceeeeeccCCeeeecChhhhhhhhHHHHHHHHHcCC
Confidence            346899999999999999999999     999999999999999999999999999999999999877778899999998


Q ss_pred             CCCCCCCC-CCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           99 KPKDPPSS-EDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ........ .....+.+.+|+.+.+..    ...       .+.       +...     ..+.    .++..+...+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~g~~~~~p~----~~~-------~~~-------~~~~-----~~~~----~~~~~~~~~~~~  141 (478)
T 2ivd_A           89 EGRIRAADPAAKRRYVYTRGRLRSVPA----SPP-------AFL-------ASDI-----LPLG----ARLRVAGELFSR  141 (478)
T ss_dssp             GGGEECSCSSCCCEEEEETTEEEECCC----SHH-------HHH-------TCSS-----SCHH----HHHHHHGGGGCC
T ss_pred             cceeeecCccccceEEEECCEEEECCC----CHH-------Hhc-------cCCC-----CCHH----HHHHHhhhhhcC
Confidence            64222111 111234455664433311    100       000       0000     0000    001111111100


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH--Hh------------h
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA--VS------------L  242 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~~------------~  242 (487)
                      .              .......++.+|+++. +...+.+.++..+....|+.+. ++++...+  +.            +
T Consensus       142 ~--------------~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  206 (478)
T 2ivd_A          142 R--------------APEGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGA  206 (478)
T ss_dssp             C--------------CCTTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHH
T ss_pred             C--------------CCCCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHH
Confidence            0              0013456788888774 4566666667777777777665 45542211  00            0


Q ss_pred             h------------c-CC----CCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEE
Q 043512          243 A------------G-SG----GGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNS---TKGNSYTCQIT  302 (487)
Q Consensus       243 ~------------~-~~----~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~V  302 (487)
                      .            . ..    .+.++++||+++++++|++.+|++|+++++|++|..+++++.|++   .+|+++.||+|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~v  286 (478)
T 2ivd_A          207 IRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQV  286 (478)
T ss_dssp             HHHHHHHTCC----CCSCCCCCCEEEETTCTHHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEE
T ss_pred             HHhhhccccccCcccccccccccEEEECCCHHHHHHHHHHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEE
Confidence            0            1 11    467899999999999999999999999999999998877788887   67878999999


Q ss_pred             EEccCCCCCCeeecCCC
Q 043512          303 VVATPLDELNLHFSPPI  319 (487)
Q Consensus       303 V~a~~~~~~~~~l~p~~  319 (487)
                      |+|+|++.... +.|++
T Consensus       287 V~a~~~~~~~~-ll~~l  302 (478)
T 2ivd_A          287 VLAAPAHATAK-LLRPL  302 (478)
T ss_dssp             EECSCHHHHHH-HHTTT
T ss_pred             EECCCHHHHHH-Hhhcc
Confidence            99999986532 33544

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.89  E-value=1.8e-22  Score=208.62  Aligned_cols=270  Identities=16%  Similarity=0.174  Sum_probs=158.9

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe--eCCeEecccceeEecCChhHHHHHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT--ISGQTFEAGASILHPKNYHTVNFTKL   95 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~--~~g~~~d~G~~~~~~~~~~~~~~~~~   95 (487)
                      ....+||+|||||++||+||+.|++     .|++|+|+|+++++||++.+..  ..|+.+|+|+++++.....+.+++++
T Consensus        30 ~~~~~~v~IiGaG~~Gl~aA~~l~~-----~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  104 (498)
T 2iid_A           30 TSNPKHVVIVGAGMAGLSAAYVLAG-----AGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRK  104 (498)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHH-----HTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHH
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHH
Confidence            3446899999999999999999999     9999999999999999999887  46889999999998877778899999


Q ss_pred             cCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512           96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        96 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      +|+.......... ..+...+|......... .....+...+   .+.     ..+.   ....++.....++......+
T Consensus       105 ~g~~~~~~~~~~~-~~~~~~~g~~~~~~~~~-~~~~~~~~~~---~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~  171 (498)
T 2iid_A          105 FDLRLNEFSQEND-NAWYFIKNIRKKVGEVK-KDPGLLKYPV---KPS-----EAGK---SAGQLYEESLGKVVEELKRT  171 (498)
T ss_dssp             TTCCEEEECSCCT-TSEEEETTEEEEHHHHH-HCGGGGCCCC---CGG-----GTTC---CHHHHHHHHTHHHHHHHHHS
T ss_pred             hCCCceeecccCC-ccEEEeCCeeecccccc-cCccccccCC---Ccc-----ccCC---CHHHHHHHHHHHHHHHHhhc
Confidence            9986432211111 01223333222110000 0000000000   000     0000   00011111111110000000


Q ss_pred             cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHh--hhcCCCCceE
Q 043512          176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR-LSPLLMQELVTIITRINYGQSL-SISGLAGAVS--LAGSGGGLWA  251 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~--~~~~~~g~~~  251 (487)
                             ......     ..+...++.+|+...+ ++....+.+.. ++.   .... ..+....+..  ......+.++
T Consensus       172 -------~~~~~~-----~~~~~~s~~~~l~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (498)
T 2iid_A          172 -------NCSYIL-----NKYDTYSTKEYLIKEGDLSPGAVDMIGD-LLN---EDSGYYVSFIESLKHDDIFAYEKRFDE  235 (498)
T ss_dssp             -------CHHHHH-----HHHTTSBHHHHHHHTSCCCHHHHHHHHH-HTT---CGGGTTSBHHHHHHHHHHHTTCCCEEE
T ss_pred             -------cHHHHH-----HHhhhhhHHHHHHHccCCCHHHHHHHHH-hcC---cccchhHHHHHHHHHHhccccCcceEE
Confidence                   011111     1234467788888765 44443322211 110   0001 1111111111  1122334678


Q ss_pred             eecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc----eEecCEEEEccCCCCC-CeeecCCCCC
Q 043512          252 VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN----SYTCQITVVATPLDEL-NLHFSPPISI  321 (487)
Q Consensus       252 ~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~----~~~ad~VV~a~~~~~~-~~~l~p~~~~  321 (487)
                      ++||+++++++|++.++.+|+++++|++|..+++++.|++.+|+    +++||+||+|+|+... .+.|.|++|.
T Consensus       236 ~~gG~~~l~~~l~~~l~~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~  310 (498)
T 2iid_A          236 IVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLP  310 (498)
T ss_dssp             ETTCTTHHHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCH
T ss_pred             eCCcHHHHHHHHHHhcccccccCCEEEEEEECCCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCH
Confidence            99999999999999887799999999999998888988887774    4799999999999864 4667787754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.87  E-value=3.9e-21  Score=197.17  Aligned_cols=252  Identities=17%  Similarity=0.240  Sum_probs=144.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCccceeEEEeeCCeEecccceeEec----CChhHHHHHH
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRMATVTISGQTFEAGASILHP----KNYHTVNFTK   94 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~----~~~~~~~~~~   94 (487)
                      ..+||+|||||++||++|+.|++     .|+ +|+|+|+++++||++.+....|+.+|.|++|++.    ....+.++++
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~-----~g~~~v~~~e~~~~~gg~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~   77 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE-----AGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVN   77 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH-----TTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEESSSSCCTHHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-----cCCCceEEEeCCCCCCCceeecccCCcEEeeCCeEEeccCCCCCCHHHHHHH
Confidence            45799999999999999999999     998 8999999999999999999999999999999983    3345668888


Q ss_pred             H-cCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhh
Q 043512           95 L-LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYE  173 (487)
Q Consensus        95 ~-lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (487)
                      + +|+.............+...+|..+.           ... ........          .....+.+    .+   ..
T Consensus        78 ~~lgl~~~~~~~~~~~~~~~~~~g~~~~-----------~~~-~~~~~~~~----------~~~~~~~~----~~---~~  128 (472)
T 1b37_A           78 STLKLRNFRSDFDYLAQNVYKEDGGVYD-----------EDY-VQKRIELA----------DSVEEMGE----KL---SA  128 (472)
T ss_dssp             TTSCCCEEECCCTTGGGCEECSSSSBCC-----------HHH-HHHHHHHH----------HHHHHHHH----HH---HH
T ss_pred             hhcCCceeeccCccccceeEcCCCCCCC-----------HHH-HHHHHHHH----------HHHHHHHH----HH---HH
Confidence            8 88764321111100001111222111           000 00000000          00111111    11   11


Q ss_pred             hccCCCCCCCHHHHHHHcCChhhhcccHH--HHHHHcCC--CHHHHHHHHHHHH-HhhcCCCCCcchHHHH---HhhhcC
Q 043512          174 SFETRPVFESVDEMLKWAGLFNLTARSLE--EELIDARL--SPLLMQELVTIIT-RINYGQSLSISGLAGA---VSLAGS  245 (487)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~--~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~  245 (487)
                      .+.. ...               .+.++.  +++.+...  .....+.++..+. ...++.+.+..++..+   ..+...
T Consensus       129 ~~~~-~~~---------------~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  192 (472)
T 1b37_A          129 TLHA-SGR---------------DDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDF  192 (472)
T ss_dssp             TSCT-TCT---------------TCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTSSCHHHHHH
T ss_pred             hhcc-ccc---------------hhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcccccccccc
Confidence            1100 000               111111  23332210  0000111222222 1223333221111111   011111


Q ss_pred             CCCceE--eecchHHHHHHHHHhc-----------CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          246 GGGLWA--VEGGNWQMAAGLINRS-----------DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       246 ~~g~~~--~~gG~~~l~~~l~~~~-----------G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      ..+.+.  ++||++.++++|++.+           |++|+++++|++|..+++++.|++.+|++++||+||+|+|++.+.
T Consensus       193 ~~~~~~~~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~l~  272 (472)
T 1b37_A          193 GDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQ  272 (472)
T ss_dssp             CSEEEEECCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHHHHH
T ss_pred             CCceeeeecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHHHhc
Confidence            223343  3799999999998864           678999999999999988899999999899999999999998642


Q ss_pred             ---eeecCCCCC
Q 043512          313 ---LHFSPPISI  321 (487)
Q Consensus       313 ---~~l~p~~~~  321 (487)
                         +.|.|+++.
T Consensus       273 ~~~~~~~p~Lp~  284 (472)
T 1b37_A          273 SDLIQFKPKLPT  284 (472)
T ss_dssp             TTSSEEESCCCH
T ss_pred             cCCeeECCCCCH
Confidence               456777653

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.86  E-value=1.6e-20  Score=201.16  Aligned_cols=255  Identities=17%  Similarity=0.229  Sum_probs=150.6

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCC-hhHHHHHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKN-YHTVNFTKL   95 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~-~~~~~~~~~   95 (487)
                      ....+||+|||||++||+||+.|++     .|++|+|+|+++++|||+++... +|..+|.|++++++.. ..+..+.++
T Consensus       333 ~~~~~~v~viG~G~~Gl~aA~~l~~-----~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~~np~~~l~~~  407 (776)
T 4gut_A          333 DYHNKSVIIIGAGPAGLAAARQLHN-----FGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPVALMCEQ  407 (776)
T ss_dssp             GGTSCEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCTTCHHHHHHHH
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHH-----CCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCccChHHHHHHH
Confidence            3446899999999999999999999     99999999999999999999864 5889999999998753 345678889


Q ss_pred             cCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512           96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        96 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      +|+..........   +...+| .+..        ..+......                .+..+++    ........ 
T Consensus       408 lGl~~~~~~~~~~---l~~~~g-~~~~--------~~~~~~~~~----------------~~~~ll~----~~~~~~~~-  454 (776)
T 4gut_A          408 LGISMHKFGERCD---LIQEGG-RITD--------PTIDKRMDF----------------HFNALLD----VVSEWRKD-  454 (776)
T ss_dssp             HTCCCEECCSCCC---EECTTS-CBCC--------HHHHHHHHH----------------HHHHHHH----HHHHHGGG-
T ss_pred             hCCcccccccccc---eEccCC-cccc--------hhHHHHHHH----------------HHHHHHH----HHHHHhhc-
Confidence            9986543321111   111111 1110        000000000                0000110    00111100 


Q ss_pred             cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHH----HHHHHHHHhhcCCCC-CcchHH--HHHhhhcCCCC
Q 043512          176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQ----ELVTIITRINYGQSL-SISGLA--GAVSLAGSGGG  248 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~g~~~-~~~~~~--~~~~~~~~~~g  248 (487)
                      .......++.+.         ....+.+++...++.....+    .+....+...+|..+ .++...  ....+......
T Consensus       455 ~~~~~d~sl~~~---------~~~~~~~~l~~~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~ls~~~~~~~~~~~~~~G~  525 (776)
T 4gut_A          455 KTQLQDVPLGEK---------IEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGD  525 (776)
T ss_dssp             CCGGGCCBHHHH---------HHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHTSCTTSBBTTTTTGGGGSCCCCSC
T ss_pred             ccccccccHHHH---------HHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHhcCCChHHcChhhhhhhhhHHhcCCC
Confidence            000001111111         11223445555444211110    011111222334333 233211  11111122334


Q ss_pred             ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC---CeeecCCCCC
Q 043512          249 LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL---NLHFSPPISI  321 (487)
Q Consensus       249 ~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~---~~~l~p~~~~  321 (487)
                      .+.+.+|++.++++|++  |++|+++++|++|..+++++.|++.+|+++.||+||+|+|+..+   .+.|.|++|.
T Consensus       526 ~~~~~~G~~~l~~aLa~--gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~vL~~~~i~f~P~Lp~  599 (776)
T 4gut_A          526 HTLLTPGYSVIIEKLAE--GLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSE  599 (776)
T ss_dssp             EEECTTCTHHHHHHHHT--TSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHHHHHTTCSEEESCCCH
T ss_pred             eEEECChHHHHHHHHHh--CCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHHHHhhcccccCCCCCH
Confidence            66789999999999986  56999999999999988889999999989999999999999864   3578888764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.86  E-value=8.7e-21  Score=201.79  Aligned_cols=78  Identities=26%  Similarity=0.362  Sum_probs=68.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC-ChhHHHHHHHc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK-NYHTVNFTKLL   96 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~~l   96 (487)
                      ....+||+|||||++||+||+.|++     .|++|+|+|+++++||++.+++..++.+|+|+++++.. ...+..+.+++
T Consensus       104 ~~~~~~v~viG~G~~gl~~a~~l~~-----~g~~v~~~e~~~~~gg~~~~~~~~~~~~~~G~~~~~~~~~~~~~~l~~~l  178 (662)
T 2z3y_A          104 TKKTGKVIIIGSGVSGLAAARQLQS-----FGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQV  178 (662)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHH-----TTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHH
T ss_pred             ccCCCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCccccccccCchhhcCcEEEeCCCCchHHHHHHHh
Confidence            3456899999999999999999999     99999999999999999999999999999999998864 33455788888


Q ss_pred             CCCC
Q 043512           97 NLKP  100 (487)
Q Consensus        97 gl~~  100 (487)
                      ++..
T Consensus       179 ~~~~  182 (662)
T 2z3y_A          179 NMEL  182 (662)
T ss_dssp             TCCE
T ss_pred             Ccch
Confidence            8754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.86  E-value=6.9e-21  Score=193.97  Aligned_cols=254  Identities=14%  Similarity=0.177  Sum_probs=151.1

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCC-eE---------------eccc-
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISG-QT---------------FEAG-   78 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g-~~---------------~d~G-   78 (487)
                      ...+..+||||||||++||+||+.|++     +|++|+|+||++++||+++++..+| +.               ++.| 
T Consensus         6 ~~~~~~~dvvVIGaG~~GL~aA~~La~-----~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~   80 (453)
T 2bcg_G            6 ETIDTDYDVIVLGTGITECILSGLLSV-----DGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDR   80 (453)
T ss_dssp             -CCCCBCSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGG
T ss_pred             hhccccCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhccccc
Confidence            344567899999999999999999999     9999999999999999999987655 22               2333 


Q ss_pred             -------ceeEecCChhHHHHHHHcCCCCCCCCC-CCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHh
Q 043512           79 -------ASILHPKNYHTVNFTKLLNLKPKDPPS-SEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRY  150 (487)
Q Consensus        79 -------~~~~~~~~~~~~~~~~~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (487)
                             ++++... ..+.++++.+|+....... ...  .+.+.+|+.+.+..+.   ...+...+.++.+.       
T Consensus        81 ~~~~~l~P~~l~~~-~~l~~ll~~lg~~~~l~~~~~~~--~~~~~~g~~~~~p~~~---~~~~~~~l~~~~~~-------  147 (453)
T 2bcg_G           81 DWNVDLIPKFLMAN-GELTNILIHTDVTRYVDFKQVSG--SYVFKQGKIYKVPANE---IEAISSPLMGIFEK-------  147 (453)
T ss_dssp             GCCEESSCCBEETT-SHHHHHHHHHTGGGTCCEEECCC--EEEEETTEEEECCSSH---HHHHHCTTSCHHHH-------
T ss_pred             ceeeccccceeecC-cHHHHHHHhcCCccceEEEEccc--eeEEeCCeEEECCCCh---HHHHhhhccchhhH-------
Confidence                   4443333 3456888999975432211 111  2334566544432110   00111111111111       


Q ss_pred             cCChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-
Q 043512          151 GLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQ-  229 (487)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-  229 (487)
                          ..+.++++....    ...    .    .+..+    ........++.+|+++.+.++.+..-+ ...... .+. 
T Consensus       148 ----~~~~~~~~~~~~----~~~----~----~p~~~----~~~~~~~~s~~~~l~~~~~~~~l~~~l-~~~~~l-~~~~  205 (453)
T 2bcg_G          148 ----RRMKKFLEWISS----YKE----D----DLSTH----QGLDLDKNTMDEVYYKFGLGNSTKEFI-GHAMAL-WTND  205 (453)
T ss_dssp             ----HHHHHHHHHHHH----CBT----T----BGGGS----TTCCTTTSBHHHHHHHTTCCHHHHHHH-HHHTSC-CSSS
T ss_pred             ----HHHHHHHHHHHH----hcc----C----Cchhh----hccccccCCHHHHHHHhCCCHHHHHHH-HHHHHh-ccCc
Confidence                112222222111    110    0    00000    011235678999999888877765432 111110 011 


Q ss_pred             CC-CcchHHHH---Hh----hhcCCCCce-EeecchHHHHHHHHHh---cCCeEEeCCceEEEEEe--CCEE-EEEEccC
Q 043512          230 SL-SISGLAGA---VS----LAGSGGGLW-AVEGGNWQMAAGLINR---SDVALHLHEEIESISYL--REYY-ELNSTKG  294 (487)
Q Consensus       230 ~~-~~~~~~~~---~~----~~~~~~g~~-~~~gG~~~l~~~l~~~---~G~~i~~~~~V~~I~~~--~~~v-~V~~~~G  294 (487)
                      ++ ..++...+   ..    +..+..+.| +|+||+++++++|++.   .|++|+++++|++|..+  ++++ +|++ +|
T Consensus       206 ~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g  284 (453)
T 2bcg_G          206 DYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KL  284 (453)
T ss_dssp             GGGGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TT
T ss_pred             cccCCchHHHHHHHHHHHHHHHhhcCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CC
Confidence            11 11322222   11    122334667 9999999999999864   49999999999999988  7776 6777 57


Q ss_pred             ceEecCEEEEccCCCC
Q 043512          295 NSYTCQITVVATPLDE  310 (487)
Q Consensus       295 ~~~~ad~VV~a~~~~~  310 (487)
                      +++.||.||+|++++.
T Consensus       285 ~~~~ad~VV~a~~~~~  300 (453)
T 2bcg_G          285 GTFKAPLVIADPTYFP  300 (453)
T ss_dssp             EEEECSCEEECGGGCG
T ss_pred             eEEECCEEEECCCccc
Confidence            7899999999999974

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.86  E-value=1.4e-20  Score=184.80  Aligned_cols=281  Identities=16%  Similarity=0.159  Sum_probs=162.1

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC-CCccceeEEEe----------eCCeEecccceeEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGGRMATVT----------ISGQTFEAGASILHPKN   86 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~-~~~GGr~~s~~----------~~g~~~d~G~~~~~~~~   86 (487)
                      .+..+||+|||||++||+||+.|++     +|++|+|||++ +++|||+.+..          ..++.+|.|++++...+
T Consensus        41 ~~~~~~V~IIGAGiaGL~aA~~L~~-----~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~  115 (376)
T 2e1m_A           41 PGPPKRILIVGAGIAGLVAGDLLTR-----AGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFH  115 (376)
T ss_dssp             CCSCCEEEEECCBHHHHHHHHHHHH-----TSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTC
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHH-----CCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchH
Confidence            3456899999999999999999999     99999999999 99999999987          35788999999998888


Q ss_pred             hhHHHHHHHcCCCCCCCCCCC------------CCceEEEEcCCeeEEEeccC---------CCCcchhhhh----HHHH
Q 043512           87 YHTVNFTKLLNLKPKDPPSSE------------DSTAFGIWDGSKFVFKTISV---------SSTVPFVQKI----VSLA  141 (487)
Q Consensus        87 ~~~~~~~~~lgl~~~~~~~~~------------~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~----~~~~  141 (487)
                      ..+.++++++|+.........            .......|++.++......+         +..+-+....    ....
T Consensus       116 ~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~~~~  195 (376)
T 2e1m_A          116 PLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYA  195 (376)
T ss_dssp             HHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHHHHH
T ss_pred             HHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceecccccc
Confidence            888899999998754322111            00112334444333211000         0000000000    0000


Q ss_pred             HHHHHH-HHhcCChH----HHhHHHHHHHHHHHHhhhh-ccCCC----CCCCHHHHHHHcCChhhhcccHHHHHH-HcCC
Q 043512          142 NSVLMV-LRYGLSLL----RMESFTESAVDKFLKYYES-FETRP----VFESVDEMLKWAGLFNLTARSLEEELI-DARL  210 (487)
Q Consensus       142 ~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~  210 (487)
                      .....+ ..|+....    ....++....+.+...+.. .....    .+......+. .....++..++.+|+. ..++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lD~~S~~~~L~~~~g~  274 (376)
T 2e1m_A          196 TDPSSINEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWA-DVVRDFDGYSMGRFLREYAEF  274 (376)
T ss_dssp             HCTHHHHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHH-HHHHHHTTCBHHHHHHHTSCC
T ss_pred             cCHHHhccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccch-HHHHHHhCCCHHHHHhhccCC
Confidence            001111 12332221    1233344444445444321 00000    0110011111 1122457889999999 7888


Q ss_pred             CHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhhc--CCCCceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEE
Q 043512          211 SPLLMQELVTIITRINYGQSLSISGLAGAVSLAG--SGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYE  288 (487)
Q Consensus       211 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~g~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~  288 (487)
                      ++..++.+.. +  .++++..+++.+..+.....  .....+.+.||+++|+++|++.++.+|++|++|++|...++++.
T Consensus       275 s~~~~~~~~~-~--~~~~~~~~~s~l~~l~~~~~~~~~~~~~~i~GG~~~l~~~l~~~l~~~i~l~~~V~~I~~~~~gv~  351 (376)
T 2e1m_A          275 SDEAVEAIGT-I--ENMTSRLHLAFFHSFLGRSDIDPRATYWEIEGGSRMLPETLAKDLRDQIVMGQRMVRLEYYDPGRD  351 (376)
T ss_dssp             CHHHHHHHHH-H--TTCTTTTTSBHHHHHHHCSCSCTTCCEEEETTCTTHHHHHHHHHGGGTEECSEEEEEEEECCCC--
T ss_pred             CHHHHHHHHh-h--cCccccchhhHHHHHHHhhhhccCCceEEECCcHHHHHHHHHHhcCCcEEecCeEEEEEECCCceE
Confidence            8877654322 2  25555445665555543322  22346789999999999999999889999999999999887776


Q ss_pred             EEEccCceEecCEEEEccC
Q 043512          289 LNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       289 V~~~~G~~~~ad~VV~a~~  307 (487)
                      |.+.+.......+|.+.+-
T Consensus       352 v~~~~~~~~~g~~~~~~~~  370 (376)
T 2e1m_A          352 GHHGELTGPGGPAVAIQTV  370 (376)
T ss_dssp             -----------CCEEEEEE
T ss_pred             EEeCCCcCCCCCeeEEEec
Confidence            5544433445566666553

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.85  E-value=1.4e-21  Score=200.89  Aligned_cols=244  Identities=16%  Similarity=0.175  Sum_probs=157.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCccceeEEEee-CCeEecccceeEecC---ChhHHHHHH
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVVGGRMATVTI-SGQTFEAGASILHPK---NYHTVNFTK   94 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~---~~~~~~~~~   94 (487)
                      ++||+|||||++||+||++|++     +|+  +|+|||+++++||++++... +|+.+|.|++++...   +..+.++++
T Consensus         2 ~~dVvVIGaGiaGLsaA~~L~~-----~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~   76 (477)
T 3nks_A            2 GRTVVVLGGGISGLAASYHLSR-----APCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVS   76 (477)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHT-----SSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHH
T ss_pred             CceEEEECCcHHHHHHHHHHHh-----CCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHH
Confidence            4799999999999999999999     999  99999999999999999876 589999999988653   345668999


Q ss_pred             HcCCCCCCCCCCC----CCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHH
Q 043512           95 LLNLKPKDPPSSE----DSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLK  170 (487)
Q Consensus        95 ~lgl~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (487)
                      ++|+.........    ....+.+.+|....+...    ...+......+.            ....           ..
T Consensus        77 ~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~----~~~~~~~~~~~~------------~~~~-----------~~  129 (477)
T 3nks_A           77 ELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTG----LRGLLRPSPPFS------------KPLF-----------WA  129 (477)
T ss_dssp             HTTCGGGEEEECTTSHHHHCEEEEETTEEEECCCS----SCC---CCTTSC------------SCSS-----------HH
T ss_pred             HcCCcceeeecCCCCchhcceEEEECCEEEECCCC----hhhcccccchhh------------hHHH-----------HH
Confidence            9998743221100    001234445544443211    110100000000            0000           00


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH---Hhh----
Q 043512          171 YYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA---VSL----  242 (487)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~---~~~----  242 (487)
                      ....+     +.         ........++.+|+.+. +...+.+.++.++....|+.+. +++....+   ..+    
T Consensus       130 ~~~~~-----~~---------~~~~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~  194 (477)
T 3nks_A          130 GLREL-----TK---------PRGKEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTH  194 (477)
T ss_dssp             HHTTT-----TS---------CCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHH
T ss_pred             HHHhh-----hc---------CCCCCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHc
Confidence            00000     00         00112346777777662 3455666677777777777665 45443211   100    


Q ss_pred             -------------------------hcCCCCceEeecchHHHHHHHHHhc---CCeEEeCCceEEEEEeCCE-EEEEEcc
Q 043512          243 -------------------------AGSGGGLWAVEGGNWQMAAGLINRS---DVALHLHEEIESISYLREY-YELNSTK  293 (487)
Q Consensus       243 -------------------------~~~~~g~~~~~gG~~~l~~~l~~~~---G~~i~~~~~V~~I~~~~~~-v~V~~~~  293 (487)
                                               .....+.++++||+++++++|++.+   |++|+++++|++|..++++ +.|++. 
T Consensus       195 gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~-  273 (477)
T 3nks_A          195 RSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLR-  273 (477)
T ss_dssp             SCHHHHHHHC-----CCCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECS-
T ss_pred             CCHHHHHHHhcccccCCchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEEC-
Confidence                                     0012357899999999999998754   8999999999999988766 788774 


Q ss_pred             CceEecCEEEEccCCCCCC
Q 043512          294 GNSYTCQITVVATPLDELN  312 (487)
Q Consensus       294 G~~~~ad~VV~a~~~~~~~  312 (487)
                      |+++.||+||+|+|++...
T Consensus       274 ~~~~~ad~vv~a~p~~~~~  292 (477)
T 3nks_A          274 DSSLEADHVISAIPASVLS  292 (477)
T ss_dssp             SCEEEESEEEECSCHHHHH
T ss_pred             CeEEEcCEEEECCCHHHHH
Confidence            4589999999999998653

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.85  E-value=5.1e-21  Score=206.24  Aligned_cols=78  Identities=26%  Similarity=0.362  Sum_probs=68.5

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecC-ChhHHHHHHHc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPK-NYHTVNFTKLL   96 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~-~~~~~~~~~~l   96 (487)
                      ....+||+|||||++||+||+.|++     .|++|+|||+++++||++.+++..++.+|+|+++++.. ...+..+.+++
T Consensus       275 ~~~~~~v~viG~G~aGl~~A~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~G~~~~~~~~~~~~~~l~~~l  349 (852)
T 2xag_A          275 TKKTGKVIIIGSGVSGLAAARQLQS-----FGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQV  349 (852)
T ss_dssp             SSCCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSSCTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHT
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHH-----CCCcEEEEEecCcCCCceeeecccccchhcCceEecCCCCchHHHHHHHh
Confidence            3456899999999999999999999     99999999999999999999999999999999998864 23455778888


Q ss_pred             CCCC
Q 043512           97 NLKP  100 (487)
Q Consensus        97 gl~~  100 (487)
                      ++..
T Consensus       350 g~~~  353 (852)
T 2xag_A          350 NMEL  353 (852)
T ss_dssp             TCCE
T ss_pred             CCch
Confidence            8754

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.85  E-value=2.1e-20  Score=189.24  Aligned_cols=254  Identities=12%  Similarity=0.120  Sum_probs=157.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-----e----------------CCeEecc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-----I----------------SGQTFEA   77 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-----~----------------~g~~~d~   77 (487)
                      +..+||+|||||++|+++|+.|++     +|++|+|+|+++++||+++|+.     .                .++.+|+
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~-----~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~   78 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSV-----NGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDL   78 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEES
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEcc
Confidence            346899999999999999999999     9999999999999999999988     1                4577899


Q ss_pred             cceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHH
Q 043512           78 GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRM  157 (487)
Q Consensus        78 G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (487)
                      |++++.... .+.++++++|+.......... ..+.+.+|+.+.+..+.   ...+...+.++.+.           ..+
T Consensus        79 gP~~l~~~~-~l~~ll~~lgl~~~l~~~~~~-~~~~~~~g~~~~~p~~~---~~~~~~~l~~~~~~-----------~~~  142 (433)
T 1d5t_A           79 IPKFLMANG-QLVKMLLYTEVTRYLDFKVVE-GSFVYKGGKIYKVPSTE---TEALASNLMGMFEK-----------RRF  142 (433)
T ss_dssp             SCCBEETTS-HHHHHHHHHTGGGGCCEEECC-EEEEEETTEEEECCCSH---HHHHHCSSSCHHHH-----------HHH
T ss_pred             Ccceeeccc-hHHHHHHHcCCccceEEEEeC-ceEEeeCCEEEECCCCH---HHHhhCcccChhhH-----------HHH
Confidence            999888765 456888999976432211111 11334455444432110   00011111111110           112


Q ss_pred             hHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCC-CCCcchH
Q 043512          158 ESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQ-SLSISGL  236 (487)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~  236 (487)
                      .++++..        ..+...    ....    ....+....++.+|+++.+.++.+.+.+. ..+....+. +.+.++.
T Consensus       143 ~~~~~~~--------~~~~~~----~p~~----~~~~~~~~~s~~~~l~~~~~~~~l~~~l~-~~~~~~~~~~~~~~p~~  205 (433)
T 1d5t_A          143 RKFLVFV--------ANFDEN----DPKT----FEGVDPQNTSMRDVYRKFDLGQDVIDFTG-HALALYRTDDYLDQPCL  205 (433)
T ss_dssp             HHHHHHH--------HHCCTT----CGGG----GTTCCTTTSBHHHHHHHTTCCHHHHHHHH-HHTSCCSSSGGGGSBSH
T ss_pred             HHHHHHH--------Hhhccc----Cchh----ccccccccCCHHHHHHHcCCCHHHHHHHH-HHHHhccCCCccCCCHH
Confidence            2222211        111100    0000    01123456889999998888777654322 221111222 2234443


Q ss_pred             ---HHHHhhhc----CCCC-ceEeecchHHHHHHHHHh---cCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEE
Q 043512          237 ---AGAVSLAG----SGGG-LWAVEGGNWQMAAGLINR---SDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVV  304 (487)
Q Consensus       237 ---~~~~~~~~----~~~g-~~~~~gG~~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~  304 (487)
                         ..+..+..    ...+ .++++||+++++++|++.   .|++|+++++|++|..+++++. |+ .+|+++.||+||+
T Consensus       206 ~~~~~~~~~~~s~~~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~-~~g~~~~ad~VV~  284 (433)
T 1d5t_A          206 ETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVK-SEGEVARCKQLIC  284 (433)
T ss_dssp             HHHHHHHHHHHSCCSSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEE-ETTEEEECSEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEE-ECCeEEECCEEEE
Confidence               33323222    1222 569999999999999764   5999999999999999888874 55 4777899999999


Q ss_pred             ccCCCCC
Q 043512          305 ATPLDEL  311 (487)
Q Consensus       305 a~~~~~~  311 (487)
                      |++++..
T Consensus       285 a~~~~~~  291 (433)
T 1d5t_A          285 DPSYVPD  291 (433)
T ss_dssp             CGGGCGG
T ss_pred             CCCCCcc
Confidence            9999854

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.83  E-value=4e-20  Score=186.56  Aligned_cols=257  Identities=12%  Similarity=0.132  Sum_probs=152.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--------------------CeEecc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--------------------GQTFEA   77 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--------------------g~~~d~   77 (487)
                      .+..+||+|||+|++|+++|+.|++     +|++|+|+||++++||++++...+                    +|.+|+
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~-----~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL   91 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSH-----YGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDL   91 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEES
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEee
Confidence            3456899999999999999999999     999999999999999999998642                    468899


Q ss_pred             cceeEecCChhHHHHHHHcCCCCCCCCCCCCCceEEEEcCC------eeEEEeccCCCCcc-hhhhhHHHHHHHHHHHHh
Q 043512           78 GASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGS------KFVFKTISVSSTVP-FVQKIVSLANSVLMVLRY  150 (487)
Q Consensus        78 G~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  150 (487)
                      +++++.... .+.+++...++.....+..... .+.+..+.      .-.+... |.+... +.....++.++       
T Consensus        92 ~P~~l~~~g-~L~~lL~~~gv~~ylef~~~~~-~y~~~~~~~~~~~~~g~~~~V-Pss~~e~~~~~lLs~~eK-------  161 (475)
T 3p1w_A           92 IPKFILVGG-NLVKILKKTRVTNYLEWLVVEG-SYVYQHQKKGFLTSEKFIHKV-PATDMEALVSPLLSLMEK-------  161 (475)
T ss_dssp             SCCBEETTS-HHHHHHHHTTCGGGSCEEECSE-EEEEEEECCCSSSCCEEEEEC-CCSHHHHHTCTTSCHHHH-------
T ss_pred             cCeEeecCc-HHHHHHHHCCchheeEEEecCc-ceEEecCccccccCCCceEeC-CCCHHHHhhccCCCHHHH-------
Confidence            998886655 3447777778765544321110 11221100      0111111 111111 11111111111       


Q ss_pred             cCChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCC
Q 043512          151 GLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQS  230 (487)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~  230 (487)
                          .++.+|+..        ...+...    ....    ....+....++.+|+++.++.+.+.+.+..+..-......
T Consensus       162 ----~~l~kFL~~--------l~~~~~~----~~~~----~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~  221 (475)
T 3p1w_A          162 ----NRCKNFYQY--------VSEWDAN----KRNT----WDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDY  221 (475)
T ss_dssp             ----HHHHHHHHH--------HHHCCTT----CGGG----STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGG
T ss_pred             ----HHHHHHHHH--------HHhhhhc----cchh----hhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCc
Confidence                122222221        1111000    0000    0012235678999999999988877543222111111111


Q ss_pred             CCcchHHHH---Hhh----hcC-CCCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEE-eCCEE-EEEEccCceE
Q 043512          231 LSISGLAGA---VSL----AGS-GGGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISY-LREYY-ELNSTKGNSY  297 (487)
Q Consensus       231 ~~~~~~~~~---~~~----~~~-~~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~-~~~~v-~V~~~~G~~~  297 (487)
                      .+.++...+   ..+    ..+ ..+..+|+||+++++++|++   ..|++|+++++|++|.. +++++ +|++.+|+++
T Consensus       222 ~~~~a~~~l~ri~~y~~Sl~~yg~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i  301 (475)
T 3p1w_A          222 LKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIA  301 (475)
T ss_dssp             GGSBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             ccCCHHHHHHHHHHHHHHHhhcCCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEE
Confidence            123432211   111    112 23467999999999999976   45999999999999998 55654 8999999899


Q ss_pred             ecCEEEEccCCC
Q 043512          298 TCQITVVATPLD  309 (487)
Q Consensus       298 ~ad~VV~a~~~~  309 (487)
                      .||+||+|++..
T Consensus       302 ~Ad~VI~a~~~~  313 (475)
T 3p1w_A          302 YCDKVICDPSYV  313 (475)
T ss_dssp             EEEEEEECGGGC
T ss_pred             ECCEEEECCCcc
Confidence            999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.83  E-value=4.6e-21  Score=191.94  Aligned_cols=231  Identities=15%  Similarity=0.190  Sum_probs=147.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccceeEEEee--CCeEe-cccceeEecCChhHHHHHHH
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGGRMATVTI--SGQTF-EAGASILHPKNYHTVNFTKL   95 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GGr~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~~~   95 (487)
                      ..+||+|||||++||+||+.|++     + |++|+|+|+++++||++++...  +|+.+ +.|+++++..+..+.+++++
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~-----~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~   80 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVAT-----QLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQ   80 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHH-----HSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-----hCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHH
Confidence            46899999999999999999999     8 9999999999999999999988  68887 59999999888888889888


Q ss_pred             cCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512           96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        96 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      +++...  ...   ....+.+|+.+.+..    .       ...    +..++.....+.....+       +.......
T Consensus        81 ~g~~~~--~~~---~~~~~~~G~~~~~p~----~-------~~~----~~~l~~~~~~~~~~~~~-------l~~~~~~~  133 (399)
T 1v0j_A           81 FTDFTD--YRH---RVFAMHNGQAYQFPM----G-------LGL----VSQFFGKYFTPEQARQL-------IAEQAAEI  133 (399)
T ss_dssp             TCCBCC--CCC---CEEEEETTEEEEESS----S-------HHH----HHHHHTSCCCHHHHHHH-------HHHHGGGS
T ss_pred             hhhhhc--ccc---ceEEEECCEEEeCCC----C-------HHH----HHHHhcccCCHHHHHHH-------HHHHhhcc
Confidence            886221  111   124445665555421    0       000    11111111011111111       11111100


Q ss_pred             cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH--HHhhhcCC----CC
Q 043512          176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG--AVSLAGSG----GG  248 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~--~~~~~~~~----~g  248 (487)
                                        ......++.+|+.+ .+...+.+.++..++...++.+. ++++...  +.......    ..
T Consensus       134 ------------------~~~~~~s~~e~l~~-~~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~  194 (399)
T 1v0j_A          134 ------------------DTADAQNLEEKAIS-LIGRPLYEAFVKGYTAKQWQTDPKELPAANITRLPVRYTFDNRYFSD  194 (399)
T ss_dssp             ------------------CTTC----CCHHHH-HHCHHHHHHHTHHHHHHHHTSCGGGSCGGGCSCCCCCSSSCCCSCCC
T ss_pred             ------------------CCCCcccHHHHHHH-HHhHHHHHHHHHHHHHhhcCCChhhcChHhhhcceeEeccccchhhh
Confidence                              00123456666665 34456666677777777777665 5665433  11111111    11


Q ss_pred             ce--EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceE-ecCEEEEccCCCCC
Q 043512          249 LW--AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSY-TCQITVVATPLDEL  311 (487)
Q Consensus       249 ~~--~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~-~ad~VV~a~~~~~~  311 (487)
                      .|  +|+||+++++++|++.+|++|++|++|++|..+     |   +  ++ .||+||+|+|+...
T Consensus       195 ~~~~~p~gG~~~l~~~l~~~~g~~I~l~~~V~~I~~~-----v---~--~~~~aD~VI~t~p~~~l  250 (399)
T 1v0j_A          195 TYEGLPTDGYTAWLQNMAADHRIEVRLNTDWFDVRGQ-----L---R--PGSPAAPVVYTGPLDRY  250 (399)
T ss_dssp             SEEECBTTHHHHHHHHHTCSTTEEEECSCCHHHHHHH-----H---T--TTSTTCCEEECSCHHHH
T ss_pred             hhcccccccHHHHHHHHHhcCCeEEEECCchhhhhhh-----h---h--hcccCCEEEECCcHHHH
Confidence            34  899999999999999889999999999999642     2   1  45 79999999999753

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.82  E-value=4.4e-20  Score=190.26  Aligned_cols=244  Identities=15%  Similarity=0.174  Sum_probs=141.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-----------------CCeEecccce
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-----------------SGQTFEAGAS   80 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-----------------~g~~~d~G~~   80 (487)
                      .+..+||+|||||++||+||+.|++     +|++|+|||+++++||++++...                 +|..+|.|++
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~-----~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   82 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQK-----AGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGAT   82 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCC
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH-----CCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchh
Confidence            3457899999999999999999999     99999999999999999998875                 5678999999


Q ss_pred             eEecCChhHHHHHHHcCCCCCCCCCCCCCceEEE-Ec-----CCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCCh
Q 043512           81 ILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGI-WD-----GSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSL  154 (487)
Q Consensus        81 ~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (487)
                      ++...+ .+.++++++|+.......... ..+.+ .+     |..+.+           ......+...           
T Consensus        83 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~-----------~~~~~~~~~~-----------  138 (489)
T 2jae_A           83 RIPQSH-ITLDYCRELGVEIQGFGNQNA-NTFVNYQSDTSLSGQSVTY-----------RAAKADTFGY-----------  138 (489)
T ss_dssp             CEETTS-THHHHHHHHTCCEEEECCCCT-TSEEECCCSSTTTTCCEEH-----------HHHHHHHHHH-----------
T ss_pred             hcccHH-HHHHHHHHcCCceEEccccCC-CceEEecCCcccCCccccH-----------HHHhhhhhcc-----------
Confidence            888766 778999999987533221111 01222 22     222211           1110011000           


Q ss_pred             HHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcC-------CCHHHHHHHH-HHHHHhh
Q 043512          155 LRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDAR-------LSPLLMQELV-TIITRIN  226 (487)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~-~~~~~~~  226 (487)
                            +.+....+.... .+.  ..+.            .....++.+|+.+.+       +.......+. .......
T Consensus       139 ------~~~l~~~~~~~~-~~~--~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (489)
T 2jae_A          139 ------MSELLKKATDQG-ALD--QVLS------------REDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLN  197 (489)
T ss_dssp             ------HHHHHHHHHHHT-TTT--TTSC------------HHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTC
T ss_pred             ------HHHHHHHHHhcc-ccc--cccc------------hhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccc
Confidence                  000000010000 000  0000            001123333333210       0000000000 0000000


Q ss_pred             cCC---CCCcchHHH--HHhh------hcCCCCceEeecchHHHHHHHHHhcC-CeEEeCCceEEEEEeCCEEEEEEccC
Q 043512          227 YGQ---SLSISGLAG--AVSL------AGSGGGLWAVEGGNWQMAAGLINRSD-VALHLHEEIESISYLREYYELNSTKG  294 (487)
Q Consensus       227 ~g~---~~~~~~~~~--~~~~------~~~~~g~~~~~gG~~~l~~~l~~~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G  294 (487)
                      .+.   +.++..+..  +..+      .....+.++++||+++|+++|++.++ ++|+++++|++|..+++++.|++.+|
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g  277 (489)
T 2jae_A          198 FGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMMFTPVGGMDRIYYAFQDRIGTDNIVFGAEVTSMKNVSEGVTVEYTAG  277 (489)
T ss_dssp             CCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSEEEETTCTTHHHHHHHHHHCGGGEETTCEEEEEEEETTEEEEEEEET
T ss_pred             cCCCCCCcCHHHHhhhhHHHHHhhhhccccCccEEeecCCHHHHHHHHHHhcCCCeEEECCEEEEEEEcCCeEEEEEecC
Confidence            000   001111111  0000      11123477899999999999999988 89999999999999999999988776


Q ss_pred             ---ceEecCEEEEccCCCCC
Q 043512          295 ---NSYTCQITVVATPLDEL  311 (487)
Q Consensus       295 ---~~~~ad~VV~a~~~~~~  311 (487)
                         +++.||+||+|+|+...
T Consensus       278 ~~~~~~~ad~vI~a~p~~~l  297 (489)
T 2jae_A          278 GSKKSITADYAICTIPPHLV  297 (489)
T ss_dssp             TEEEEEEESEEEECSCHHHH
T ss_pred             CeEEEEECCEEEECCCHHHH
Confidence               68999999999999854

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.79  E-value=3.8e-19  Score=176.10  Aligned_cols=227  Identities=16%  Similarity=0.220  Sum_probs=150.8

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe-eCCeEe-cccceeEecCChhHHHHHHH
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT-ISGQTF-EAGASILHPKNYHTVNFTKL   95 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~-~~g~~~-d~G~~~~~~~~~~~~~~~~~   95 (487)
                      ....+||+|||||++||+||+.|++     +|++|+|+|+++++||++.+.. ..|..+ |.|+++++..+..+.+++++
T Consensus        26 ~~~~~dv~IIGaG~aGl~aA~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~  100 (397)
T 3hdq_A           26 ESKGFDYLIVGAGFAGSVLAERLAS-----SGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSR  100 (397)
T ss_dssp             CCCCEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHT
T ss_pred             cCCCCCEEEECccHHHHHHHHHHHH-----CCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHH
Confidence            3456899999999999999999999     9999999999999999999887 678764 99999999888888899999


Q ss_pred             cCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhc
Q 043512           96 LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESF  175 (487)
Q Consensus        96 lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (487)
                      ++......     .....+.+|+.+.+.           ..+    ..+..+|...........++.       .  .  
T Consensus       101 ~~~~~~~~-----~~~~~~~~g~l~~lP-----------~~~----~~~~~l~~~~~~~~~~~~~l~-------~--~--  149 (397)
T 3hdq_A          101 FTEWRPYQ-----HRVLASVDGQLLPIP-----------INL----DTVNRLYGLNLTSFQVEEFFA-------S--V--  149 (397)
T ss_dssp             SCCEEECC-----CBEEEEETTEEEEES-----------CCH----HHHHHHHTCCCCHHHHHHHHH-------H--H--
T ss_pred             hhhccccc-----ccceEEECCEEEEcC-----------CCh----HHHHHhhccCCCHHHHHHHHh-------h--c--
Confidence            88432111     112444566555542           110    001112221111111111111       0  0  


Q ss_pred             cCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchH-HHHHhhhc-C----CCC
Q 043512          176 ETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGL-AGAVSLAG-S----GGG  248 (487)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~-~----~~g  248 (487)
                                      ........++.+|+.+. +.+.+.+.++.+++...|+.+. ++|+. ..-+.... .    ..+
T Consensus       150 ----------------~~~~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~~~~~~Lsa~~~~Rvp~~~~~d~~yf~~  212 (397)
T 3hdq_A          150 ----------------AEKVEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWGLDPSELDASVTARVPTRTNRDNRYFAD  212 (397)
T ss_dssp             ----------------CCCCSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSBTTTGGGSCCCSSCCCBSCCC
T ss_pred             ----------------ccCCCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhCCCHHHHHHHHHHhcCcccccCccchhh
Confidence                            00112346777777643 3355667788888888888776 57753 22111111 0    113


Q ss_pred             ce--EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          249 LW--AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       249 ~~--~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+  +|+||+.+++++|++..|++|++|++|+++             +..+.+|.||+|+|+..
T Consensus       213 ~~qg~P~gGy~~l~e~l~~~~g~~V~l~~~v~~~-------------~~~~~~d~vI~T~P~d~  263 (397)
T 3hdq_A          213 TYQAMPLHGYTRMFQNMLSSPNIKVMLNTDYREI-------------ADFIPFQHMIYTGPVDA  263 (397)
T ss_dssp             SEEEEETTCHHHHHHHHTCSTTEEEEESCCGGGT-------------TTTSCEEEEEECSCHHH
T ss_pred             hheeccCCCHHHHHHHHHhccCCEEEECCeEEec-------------cccccCCEEEEcCCHHH
Confidence            33  699999999999998889999999999732             44678999999999864

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.79  E-value=6.4e-19  Score=175.29  Aligned_cols=224  Identities=13%  Similarity=0.174  Sum_probs=149.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee--CCeEe-cccceeEecCChhHHHHHHHcC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI--SGQTF-EAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~--~g~~~-d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      .+||+|||||++|+++|+.|++     .|++|+|+|+++++||++++...  .|+.+ |.|+++++..++.+.+++++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~   77 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE-----KGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHA   77 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHHh
Confidence            4799999999999999999999     99999999999999999999988  78876 9999999988888888888887


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      ....  ... .  ...+.+|+.+.+..    .       ...+..    ++.....+....+++.       ....    
T Consensus        78 ~~~~--~~~-~--~~~~~~g~~~~~P~----~-------~~~~~~----l~~~~~~~~~~~~~l~-------~~~~----  126 (384)
T 2bi7_A           78 EMMP--YVN-R--VKATVNGQVFSLPI----N-------LHTINQ----FFSKTCSPDEARALIA-------EKGD----  126 (384)
T ss_dssp             CEEE--CCC-C--EEEEETTEEEEESC----C-------HHHHHH----HTTCCCCHHHHHHHHH-------HHSC----
T ss_pred             hhcc--ccc-c--eEEEECCEEEECCC----C-------hhHHHH----HhcccCCHHHHHHHHH-------Hhhh----
Confidence            5211  111 1  13345665444421    0       001100    0000000111111111       0000    


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH-Hhh---hc--CCCCce
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA-VSL---AG--SGGGLW  250 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~---~~--~~~g~~  250 (487)
                       .             . .....++.+|+.+. +.+.+.+.++.++....|+.+. ++++.... +..   ..  ...+.|
T Consensus       127 -~-------------~-~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~~~~~~~  190 (384)
T 2bi7_A          127 -S-------------T-IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKF  190 (384)
T ss_dssp             -C-------------S-CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSE
T ss_pred             -c-------------c-CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhCCCHHHhCHHHHhccccccccccccccccc
Confidence             0             0 12356788888765 5577777777778888888766 56654321 110   01  123455


Q ss_pred             --EeecchHHHHHHHHHhcCCeEEeCCceE-EEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          251 --AVEGGNWQMAAGLINRSDVALHLHEEIE-SISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       251 --~~~gG~~~l~~~l~~~~G~~i~~~~~V~-~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                        +|+||+++++++|++..|++|+++++|+ +|..               .||+||+|+|+..+
T Consensus       191 ~~~p~gG~~~l~~~l~~~~g~~I~l~~~V~~~i~~---------------~~d~VI~a~p~~~~  239 (384)
T 2bi7_A          191 QGMPKCGYTQMIKSILNHENIKVDLQREFIVEERT---------------HYDHVFYSGPLDAF  239 (384)
T ss_dssp             EEEETTHHHHHHHHHHCSTTEEEEESCCCCGGGGG---------------GSSEEEECSCHHHH
T ss_pred             cEEECcCHHHHHHHHHhcCCCEEEECCeeehhhhc---------------cCCEEEEcCCHHHH
Confidence              8999999999999988889999999998 7742               39999999999864

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.78  E-value=2.4e-19  Score=177.34  Aligned_cols=225  Identities=16%  Similarity=0.242  Sum_probs=146.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEec-ccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFE-AGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d-~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      +||+|||||++||+||++|++     .|++|+|+|+++++||++.+....|+.+| .|+++++..+..+.+++++++...
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~-----~g~~v~v~E~~~~~GG~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l~~~~   76 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKK-----LNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLVEFN   76 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGG-----GTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTSCBC
T ss_pred             CCEEEECcCHHHHHHHHHHHh-----CCCcEEEEecCCCCCcceEeeccCCceeeccCCceecCCCHHHHHHHHHhhhhh
Confidence            689999999999999999999     99999999999999999999998999995 999999988877778888777532


Q ss_pred             CCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512          101 KDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV  180 (487)
Q Consensus       101 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                      ..  ....   ..+.+|+.+.+.           .....+..    ++... .+....+++.+.       ...      
T Consensus        77 ~~--~~~~---~~~~~g~~~~~p-----------~~~~~~~~----l~~~~-~~~~~~~~l~~~-------~~~------  122 (367)
T 1i8t_A           77 RF--TNSP---LAIYKDKLFNLP-----------FNMNTFHQ----MWGVK-DPQEAQNIINAQ-------KKK------  122 (367)
T ss_dssp             CC--CCCC---EEEETTEEEESS-----------BSHHHHHH----HHCCC-CHHHHHHHHHHH-------TTT------
T ss_pred             hc--cccc---eEEECCeEEEcC-----------CCHHHHHH----HhccC-CHHHHHHHHHHH-------hhc------
Confidence            11  1111   344556444331           11111111    00000 111111121111       000      


Q ss_pred             CCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHH-Hhhh---c--CCCCce--E
Q 043512          181 FESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGA-VSLA---G--SGGGLW--A  251 (487)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~~---~--~~~g~~--~  251 (487)
                      +            ......++.+|+.+. +.+.+.+.++.++....++.++ ++++.... +...   .  ...+.|  +
T Consensus       123 ~------------~~~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~~~~lsa~~~~~l~~~~~~~~~~~~~~~~~~  189 (367)
T 1i8t_A          123 Y------------GDKVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQGI  189 (367)
T ss_dssp             T------------CCCCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSCGGGSCTTSSCCCCBCSSSCCCSCCCSEEEC
T ss_pred             c------------CCCCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCChHHcCHHHHhhceeeeccccccccchhhcc
Confidence            0            001345677777665 4456666677777777777665 56654321 1111   1  113455  8


Q ss_pred             eecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          252 VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       252 ~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |+||+++++++|++  |++|++|++|++|...     |      .+.||+||+|+|+...
T Consensus       190 p~gG~~~l~~~l~~--g~~i~l~~~V~~i~~~-----v------~~~~D~VV~a~p~~~~  236 (367)
T 1i8t_A          190 PVGGYTKLIEKMLE--GVDVKLGIDFLKDKDS-----L------ASKAHRIIYTGPIDQY  236 (367)
T ss_dssp             BTTCHHHHHHHHHT--TSEEECSCCGGGSHHH-----H------HTTEEEEEECSCHHHH
T ss_pred             cCCCHHHHHHHHhc--CCEEEeCCceeeechh-----h------hccCCEEEEeccHHHH
Confidence            99999999999998  6899999999988521     1      2579999999999753

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.78  E-value=7.1e-19  Score=180.40  Aligned_cols=238  Identities=12%  Similarity=0.108  Sum_probs=144.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCCccceeEEE-eeCCeEecccceeEecCChhHHHHHHHcC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGVVGGRMATV-TISGQTFEAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~~GGr~~s~-~~~g~~~d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      ..+||+|||||++||+||++|++     +| .+|+|+|+++++||++++. ..+|+.+|.|++++...+..+.++++++.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~-----~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~~   82 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTE-----LGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWAV   82 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHH-----TTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHHC
T ss_pred             cCCCEEEECcCHHHHHHHHHHHH-----cCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHHh
Confidence            46899999999999999999999     98 7999999999999999995 67899999999998877777778888864


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                       ..  .... ....+.+.+|+.+.+.-  ......++..                   .....+......    ... ..
T Consensus        83 -~~--~~~~-~~~~~~~~~g~~~~~P~--~~~~~~l~~~-------------------~~~~~~~~ll~~----~~~-~~  132 (484)
T 4dsg_A           83 -QG--WNVL-QRESWVWVRGRWVPYPF--QNNIHRLPEQ-------------------DRKRCLDELVRS----HAR-TY  132 (484)
T ss_dssp             -SC--EEEE-ECCCEEEETTEEEESSG--GGCGGGSCHH-------------------HHHHHHHHHHHH----HHC-CC
T ss_pred             -hh--hhhc-cCceEEEECCEEEEeCc--cchhhhCCHH-------------------HHHHHHHHHHHH----Hhc-cC
Confidence             21  1100 01113445554433310  0000000000                   000000000000    000 00


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-Ccch-----------HHHHHh----
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISG-----------LAGAVS----  241 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~-----------~~~~~~----  241 (487)
                                       .....++.+|+.+. +...+.+.++.+++...|+.+. ++++           +..++.    
T Consensus       133 -----------------~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~  194 (484)
T 4dsg_A          133 -----------------TEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQE  194 (484)
T ss_dssp             -----------------SSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHH
T ss_pred             -----------------CCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhh
Confidence                             01234555555443 2233333344455555565444 3333           111111    


Q ss_pred             hhc-C---CCC-ceEe-ecchHHHHHHHHHhcCC-eEEeC--CceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          242 LAG-S---GGG-LWAV-EGGNWQMAAGLINRSDV-ALHLH--EEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       242 ~~~-~---~~g-~~~~-~gG~~~l~~~l~~~~G~-~i~~~--~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      ... .   ..+ .++| .||+++++++|++.++. +|+++  ++|++|..+++++  ++.+|+++.||+||+|+|++...
T Consensus       195 ~~~~~~~~~~~~f~yp~~gG~~~l~~~la~~l~~~~i~~~~~~~V~~I~~~~~~v--~~~~G~~~~ad~VI~a~p~~~~~  272 (484)
T 4dsg_A          195 NRDDLGWGPNATFRFPQRGGTGIIYQAIKEKLPSEKLTFNSGFQAIAIDADAKTI--TFSNGEVVSYDYLISTVPFDNLL  272 (484)
T ss_dssp             TCCCCCCSTTSEEEEESSSCTHHHHHHHHHHSCGGGEEECGGGCEEEEETTTTEE--EETTSCEEECSEEEECSCHHHHH
T ss_pred             cccccCCCccceEEeecCCCHHHHHHHHHhhhhhCeEEECCCceeEEEEecCCEE--EECCCCEEECCEEEECCCHHHHH
Confidence            100 0   122 2344 58999999999998864 89999  5699999887765  45788889999999999998754

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.77  E-value=7.9e-19  Score=172.27  Aligned_cols=63  Identities=13%  Similarity=0.287  Sum_probs=57.4

Q ss_pred             ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          249 LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       249 ~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .|.+.+|+..++++|++.+|++|+++++|++|..+++++.|++.+|+++.||.||+|+|+...
T Consensus       104 ~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~~~  166 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVPEI  166 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHHHH
T ss_pred             ceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHHH
Confidence            567788999999999998899999999999999988889999988977999999999998754

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.77  E-value=3.2e-18  Score=179.70  Aligned_cols=74  Identities=18%  Similarity=0.274  Sum_probs=67.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC--------CeEEEEecCC-Cc----------------cceeEEEee-----
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH--------PRILMFERNG-VV----------------GGRMATVTI-----   70 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--------~~V~VlE~~~-~~----------------GGr~~s~~~-----   70 (487)
                      .++|+|||||++||+||+.|++     .|        ++|+|||+++ ++                |||+.+...     
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~-----~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~  130 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGR-----LAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDP  130 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----HHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCG
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcc
Confidence            4689999999999999999999     78        9999999999 99                999999877     


Q ss_pred             --CCeEecccceeEecCChhHHHHHHHc-CCC
Q 043512           71 --SGQTFEAGASILHPKNYHTVNFTKLL-NLK   99 (487)
Q Consensus        71 --~g~~~d~G~~~~~~~~~~~~~~~~~l-gl~   99 (487)
                        ++..+|+|++++...+..+.++++++ |+.
T Consensus       131 ~~~~~~~e~G~~~~~~~~~~~~~~~~~l~gl~  162 (721)
T 3ayj_A          131 ASGDTIYEVGAMRFPEIAGLTWHYASAAFGDA  162 (721)
T ss_dssp             GGCSEEEECSCCCEETTCHHHHHHHHHHHCTT
T ss_pred             cCCCcEEecCCEEecCccHHHHHHHHHhcCCc
Confidence              45889999999998887788999999 986

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.60  E-value=1.6e-14  Score=149.85  Aligned_cols=109  Identities=9%  Similarity=0.071  Sum_probs=75.3

Q ss_pred             hhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHH---Hhhh----cCC-CCceEeecchHHHHHHHHH--
Q 043512          196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGA---VSLA----GSG-GGLWAVEGGNWQMAAGLIN--  265 (487)
Q Consensus       196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~----~~~-~g~~~~~gG~~~l~~~l~~--  265 (487)
                      +...++.+|+++.++++.+...+.. .+ ..++.. ..++..++   ..+.    .+. .+.+++.||+++|+++|++  
T Consensus       312 ~d~~S~~d~L~~~~ls~~L~~~L~~-~l-al~~~~-~~pa~~~l~~i~~~l~sl~~yg~sg~~yp~GG~g~L~qaL~r~~  388 (650)
T 1vg0_A          312 YEGTTFSEYLKTQKLTPNLQYFVLH-SI-AMTSET-TSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMC  388 (650)
T ss_dssp             TTTSBHHHHHTTSSSCHHHHHHHHH-HT-TC--CC-SCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHHHH
T ss_pred             hccCCHHHHHHHhCCCHHHHHHHHH-HH-hccCCC-CCchhHHHHHHHHHHHHHHhhccCceEEeCCchhHHHHHHHHHH
Confidence            4578999999999888876644332 22 112111 12333321   2221    122 3677999999999999965  


Q ss_pred             -hcCCeEEeCCceEEEEEeC--CEE-EEEEccCceEecCEEEEccC
Q 043512          266 -RSDVALHLHEEIESISYLR--EYY-ELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       266 -~~G~~i~~~~~V~~I~~~~--~~v-~V~~~~G~~~~ad~VV~a~~  307 (487)
                       ..|++|+++++|++|..++  +++ +|++.+|+++.||+||++..
T Consensus       389 ~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~  434 (650)
T 1vg0_A          389 AVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDS  434 (650)
T ss_dssp             HHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGG
T ss_pred             HHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChh
Confidence             5699999999999999887  655 67777899999999999544

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.38  E-value=6.5e-13  Score=125.12  Aligned_cols=65  Identities=25%  Similarity=0.429  Sum_probs=59.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhH
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHT   89 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~   89 (487)
                      |+.||+|||||++||+||+.|++     +|++|+||||++.+||++++.+..+..+|.|+.++......+
T Consensus         1 Mt~dV~IIGaGpaGL~aA~~La~-----~G~~V~v~Ek~~~~GG~~~~~~~~~~~~d~g~~~~~~~~~~~   65 (336)
T 3kkj_A            1 MTVPIAIIGTGIAGLSAAQALTA-----AGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRF   65 (336)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCGGGCEEEETTEEEECSCCCBCCCSHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEECCCCCCCcccccccCCceeecCccccccCcHHH
Confidence            46899999999999999999999     999999999999999999999999999999999887766543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.36  E-value=5.2e-12  Score=134.91  Aligned_cols=64  Identities=14%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+++.+|   ...++++|.+   +.|++|+++++|++|..+++++.|++.+|.++.||.||+|++.+..
T Consensus       405 g~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          405 GITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGG
T ss_pred             cEEecCCeeeCHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchh
Confidence            34455444   2566666654   4699999999999999999999999988888999999999999854

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.35  E-value=1.1e-12  Score=130.00  Aligned_cols=63  Identities=17%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             CceEeecc---hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          248 GLWAVEGG---NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG---~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+.+.+|   ...++++|++   +.|++|+++++|++|..+++++.|++.+| ++.||+||+|++.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~  210 (381)
T 3nyc_A          142 ATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCD  210 (381)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHH
T ss_pred             EEEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHH
Confidence            34444444   2556666654   45999999999999999998899999888 8999999999999863

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.33  E-value=7.8e-12  Score=133.71  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             CceEeecch---HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCc-eEecCEEEEccCCCCC
Q 043512          248 GLWAVEGGN---WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGN-SYTCQITVVATPLDEL  311 (487)
Q Consensus       248 g~~~~~gG~---~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~a~~~~~~  311 (487)
                      +.+++.+|.   ..++++|.+   +.|++|+++++|++|..+++++.|++.+|+ ++.||.||+|++.+..
T Consensus       400 g~~~p~~g~v~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~  470 (689)
T 3pvc_A          400 GIHYPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLP  470 (689)
T ss_dssp             EEEETTCEEECHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTT
T ss_pred             eEEecCCeEECHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchh
Confidence            455555543   566776655   469999999999999998888999998887 8999999999999854

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.31  E-value=9e-12  Score=122.77  Aligned_cols=56  Identities=14%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccC--ceEecCEEEEccCCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKG--NSYTCQITVVATPLDEL  311 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G--~~~~ad~VV~a~~~~~~  311 (487)
                      ...+.+.|++   +.|++|+++++|++|..++++ +.|++.+|  .++.||.||+|++.+..
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~  210 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAP  210 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchH
Confidence            3456666654   469999999999999998765 78888888  48999999999999853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.31  E-value=1.8e-11  Score=123.91  Aligned_cols=56  Identities=7%  Similarity=0.071  Sum_probs=47.2

Q ss_pred             hHHHHHHHHH---hcCCeEEeCC---ceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHE---EIESISYLREYYE-LNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~---~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ...+.++|.+   +.|++|++++   +|++|..+++++. |++.+|+++.||.||+|++.+..
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            3456666654   4699999999   9999999888885 99999988999999999999864

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.30  E-value=4e-11  Score=120.05  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             CceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          248 GLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       248 g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      |..++......+.+.|.+   +.|++|+++++|++|..+++++.|++.+| ++.||.||+|++.+.
T Consensus       123 g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          123 GQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKS  187 (417)
T ss_dssp             TEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSS
T ss_pred             CEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCcc
Confidence            444455555667666655   45999999999999999988999999888 899999999999875

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.22  E-value=1.2e-09  Score=108.45  Aligned_cols=38  Identities=29%  Similarity=0.566  Sum_probs=35.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ++||+|||||++||+||+.|++     +|++|+|+||++.+|.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~-----~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAK-----YGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSTTC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCC
Confidence            4899999999999999999999     9999999999887764

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.22  E-value=2.1e-11  Score=123.65  Aligned_cols=55  Identities=15%  Similarity=0.171  Sum_probs=45.7

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+.+.|.+   +.|++|+++++|++|..++++ ++|++.+|++++||.||+|++.+.
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            3556666644   469999999999999988887 689998887799999999999876

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.21  E-value=8.8e-11  Score=117.63  Aligned_cols=44  Identities=9%  Similarity=0.015  Sum_probs=40.6

Q ss_pred             CeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCCC
Q 043512          269 VALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDELN  312 (487)
Q Consensus       269 ~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~~  312 (487)
                      ++|+++++|++|..+++++.|++.+|+++.||.||.|.+.+...
T Consensus       140 ~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~v  183 (407)
T 3rp8_A          140 DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL  183 (407)
T ss_dssp             GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSS
T ss_pred             CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHH
Confidence            78999999999999999999999999999999999999998643

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.19  E-value=2.6e-10  Score=113.79  Aligned_cols=44  Identities=11%  Similarity=0.053  Sum_probs=40.6

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      |++|+++++|++|..+++++.|++.+|++++||.||.|.+.+..
T Consensus       111 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A          111 PERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             STTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             CcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence            78999999999999988889999999989999999999998864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.16  E-value=1.6e-10  Score=118.95  Aligned_cols=53  Identities=8%  Similarity=0.102  Sum_probs=43.8

Q ss_pred             HHHHHHH---HhcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLI---NRSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.+.|.   ++.|++|+++++|++|..+++++ +|++.+|+++.||.||+|++.+.
T Consensus       221 ~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s  277 (549)
T 3nlc_A          221 TMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSA  277 (549)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            3444443   34699999999999999887765 68899998999999999999876

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.16  E-value=1.2e-10  Score=114.97  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=44.6

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+.+.|.+   +.|++|+++++|++|..+++++.|++.+| ++.||.||+|++.+..
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHH
Confidence            455555544   46999999999999998887888888888 6999999999998864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.13  E-value=1.3e-10  Score=115.97  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=43.5

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+   +.|++|+++++|++|..+++++.|++.+| +++||.||+|++.+.
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcCh
Confidence            344555543   46999999999999999888888888776 899999999999874

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.13  E-value=4.8e-10  Score=115.57  Aligned_cols=41  Identities=27%  Similarity=0.366  Sum_probs=38.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||||||||++||+||+.|++     +|.+|+|+||.+.+||.+
T Consensus        40 ~~~DVvVVGaG~AGl~AA~~aa~-----~G~~V~vlEk~~~~GG~s   80 (510)
T 4at0_A           40 YEADVVVAGYGIAGVAASIEAAR-----AGADVLVLERTSGWGGAT   80 (510)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTTG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCCcc
Confidence            45799999999999999999999     999999999999888865

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.13  E-value=4.5e-10  Score=115.31  Aligned_cols=50  Identities=6%  Similarity=-0.103  Sum_probs=42.4

Q ss_pred             HHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc---eEecCEEEEccCCCCC
Q 043512          262 GLINRSDVALHLHEEIESISYLREYYELNSTKGN---SYTCQITVVATPLDEL  311 (487)
Q Consensus       262 ~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~---~~~ad~VV~a~~~~~~  311 (487)
                      ..+++.|++|+++++|++|+.+++++.|++.+|.   +++||.||.|.+.+..
T Consensus       114 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A          114 QWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             HHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             HHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence            3344569999999999999999999888887764   7999999999999863

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.12  E-value=8.7e-11  Score=116.54  Aligned_cols=53  Identities=15%  Similarity=0.107  Sum_probs=44.1

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+   +.|++|+++++|++|..+++++. |++.+| ++.||.||+|++.+.
T Consensus       149 ~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          149 FEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWA  205 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhH
Confidence            455555544   46999999999999998888875 888888 899999999999985

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.12  E-value=2.6e-10  Score=113.31  Aligned_cols=53  Identities=13%  Similarity=0.169  Sum_probs=44.1

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+   +.|++|+++++|++|..+++++.|++.+| ++.||.||+|++.+.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccH
Confidence            455555544   45999999999999999888888888777 799999999999875

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.12  E-value=5.2e-10  Score=114.86  Aligned_cols=50  Identities=8%  Similarity=-0.053  Sum_probs=42.3

Q ss_pred             HHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc---eEecCEEEEccCCCCC
Q 043512          262 GLINRSDVALHLHEEIESISYLREYYELNSTKGN---SYTCQITVVATPLDEL  311 (487)
Q Consensus       262 ~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~---~~~ad~VV~a~~~~~~  311 (487)
                      ..+++.|++|+++++|++|..+++++.|++.+|+   +++||.||.|.+.+..
T Consensus       115 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A          115 EWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             HHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             HHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence            3344569999999999999998888888887774   7999999999999863

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.11  E-value=6.2e-10  Score=111.09  Aligned_cols=53  Identities=13%  Similarity=0.087  Sum_probs=43.2

Q ss_pred             HHHHHHHhc-CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          259 MAAGLINRS-DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       259 l~~~l~~~~-G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+.|.+.+ +++|+++++|++|..+++++.|++.+|++++||.||.|.+.+..
T Consensus       130 l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          130 LRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK  183 (398)
T ss_dssp             HHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS
T ss_pred             HHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh
Confidence            334444433 46899999999999888888999999988999999999999864

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.11  E-value=3e-10  Score=112.62  Aligned_cols=54  Identities=11%  Similarity=0.075  Sum_probs=44.5

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+.+.|.+   +.|++|+++++|++|..+++++.|++.+| ++.||.||+|++.+..
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG  220 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHH
Confidence            455555544   45999999999999998888888888877 8999999999999753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.10  E-value=9.1e-10  Score=109.73  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEe----CCEEEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYL----REYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~----~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+.+.|.+   +.|++|+++++|++|..+    ++++.|++.+| +++||.||+|++...
T Consensus       108 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          108 AEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLS  168 (401)
T ss_dssp             THHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCcc
Confidence            3455555543   469999999999999977    56688888777 899999999998875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.10  E-value=1.6e-10  Score=119.86  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=40.9

Q ss_pred             HHHHHHhcCC--eEEeCCceEEEEEeCC--EEEEEEccCceEecCEEEEccCC
Q 043512          260 AAGLINRSDV--ALHLHEEIESISYLRE--YYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       260 ~~~l~~~~G~--~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      .+..+++.|+  +++++++|+++..+++  .+.|++.+|+++.||.||+|++.
T Consensus       105 l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~  157 (549)
T 4ap3_A          105 LEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGP  157 (549)
T ss_dssp             HHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCS
T ss_pred             HHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCC
Confidence            3445556665  7999999999998765  78999999988999999999995

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.08  E-value=3.8e-10  Score=116.79  Aligned_cols=51  Identities=24%  Similarity=0.433  Sum_probs=42.4

Q ss_pred             HHHHHHHhcCC--eEEeCCceEEEEEeCC--EEEEEEccCceEecCEEEEccCCC
Q 043512          259 MAAGLINRSDV--ALHLHEEIESISYLRE--YYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       259 l~~~l~~~~G~--~i~~~~~V~~I~~~~~--~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ..+..+++.|+  +|+++++|+++..+++  .+.|++.+|+++.||.||+|++..
T Consensus        92 ~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~  146 (540)
T 3gwf_A           92 YLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLL  146 (540)
T ss_dssp             HHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCccc
Confidence            34445556676  8999999999998865  789999999889999999999964

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.07  E-value=1.6e-10  Score=115.52  Aligned_cols=52  Identities=13%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             HHHHHHHH---hcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLIN---RSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.+.|.+   +.|++|+++++|++|..++++ ++|++.+| ++.||.||+|++.+.
T Consensus       175 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          175 HVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhH
Confidence            55555544   469999999999999987766 47888888 799999999999875

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.05  E-value=3.4e-09  Score=110.75  Aligned_cols=40  Identities=28%  Similarity=0.449  Sum_probs=37.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||++||+||+.|++     .|.+|+|+||.+.+||..
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~-----~G~~V~vlEk~~~~gg~s  165 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATD-----SGAKVILIEKEPVIGGNA  165 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTTG
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCCch
Confidence            5799999999999999999999     999999999999888754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.05  E-value=3.3e-10  Score=123.76  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=45.0

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+.++|++   +.|++|+++++|++|..+++++ +|++.+| ++.||.||+|++.+..
T Consensus       151 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~  208 (830)
T 1pj5_A          151 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA  208 (830)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchH
Confidence            456666654   4599999999999999988876 7888888 8999999999999863

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.04  E-value=2.8e-09  Score=111.25  Aligned_cols=41  Identities=15%  Similarity=0.370  Sum_probs=37.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++||+||+.|++     .|.+|+|+||.+.+||..
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~-----~G~~V~vlEk~~~~gg~s  160 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKK-----AGANVILVDKAPFSGGNS  160 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-----HTCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCCcc
Confidence            45799999999999999999999     999999999999887754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.02  E-value=2.1e-09  Score=106.49  Aligned_cols=45  Identities=13%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++|+++++|++|.. ++  .|++.+|++++||.||.|.+.+..
T Consensus       117 ~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~  161 (379)
T 3alj_A          117 ARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSK  161 (379)
T ss_dssp             HHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCH
T ss_pred             HHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHH
Confidence            3346999999999999987 44  788888989999999999998864

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.02  E-value=6.5e-10  Score=115.47  Aligned_cols=43  Identities=28%  Similarity=0.385  Sum_probs=38.6

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+..+||+|||||++|+++|+.|++     .|++|+|+|+++.+||.+
T Consensus        13 ~~~~~dVvIIGaG~aGl~aA~~L~~-----~G~~v~iiE~~~~~GG~w   55 (542)
T 1w4x_A           13 PPEEVDVLVVGAGFSGLYALYRLRE-----LGRSVHVIETAGDVGGVW   55 (542)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTHH
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh-----CCCCEEEEeCCCCCCCcc
Confidence            3446799999999999999999999     999999999999888753

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.01  E-value=5.2e-10  Score=111.64  Aligned_cols=46  Identities=13%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             hc-CCeEEeCCceEEEEEeCCEE--EEEEccCceEecCEEEEccCCCCC
Q 043512          266 RS-DVALHLHEEIESISYLREYY--ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~-G~~i~~~~~V~~I~~~~~~v--~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +. |++|+++++|++|..+++++  .|++.+|++++||.||.|.+.+..
T Consensus       119 ~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~  167 (399)
T 2x3n_A          119 GEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY  167 (399)
T ss_dssp             TCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH
T ss_pred             hcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH
Confidence            44 88999999999999988888  899989989999999999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.98  E-value=7.2e-10  Score=112.42  Aligned_cols=54  Identities=9%  Similarity=0.001  Sum_probs=43.4

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEE---------------eCCEE-EEEEccCceE--ecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISY---------------LREYY-ELNSTKGNSY--TCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~---------------~~~~v-~V~~~~G~~~--~ad~VV~a~~~~~~  311 (487)
                      ..+.+.|.+   +.|++|+++++|++|..               +++++ +|++.+| ++  .||.||+|++.+..
T Consensus       181 ~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          181 EKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH
Confidence            456666654   45999999999999998               56665 7888888 78  99999999999853

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.98  E-value=2.5e-09  Score=106.85  Aligned_cols=54  Identities=7%  Similarity=0.016  Sum_probs=44.6

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEccCCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+-+.|.+.++.+|+++++|++++..+ +++.|++.||++++||.||-|-+.+..
T Consensus       113 ~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S~  167 (412)
T 4hb9_A          113 ELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNSK  167 (412)
T ss_dssp             HHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             HHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCcc
Confidence            344556666778899999999998754 468999999999999999999998864

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.98  E-value=8.3e-10  Score=114.35  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=37.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ..+||+|||||++|+++|..|++     .|++|+|+|+++.+||.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~-----~g~~v~iiE~~~~~GGt   47 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQ-----AGMKVLGIEAGEDVGGT   47 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTH
T ss_pred             CCCCEEEECccHHHHHHHHHHHh-----CCCCEEEEeCCCCCCCc
Confidence            45799999999999999999999     99999999999988875

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.96  E-value=3.2e-09  Score=106.61  Aligned_cols=47  Identities=13%  Similarity=0.252  Sum_probs=39.5

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEE--EEEEccCc--eEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYY--ELNSTKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v--~V~~~~G~--~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|..+++++  .|++.+|+  +++||.||.|++.+.
T Consensus       116 a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          116 AARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            344599999999999999987764  66778887  699999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.96  E-value=1.6e-09  Score=105.92  Aligned_cols=49  Identities=10%  Similarity=0.062  Sum_probs=42.3

Q ss_pred             HHHHHhcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCC
Q 043512          261 AGLINRSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       261 ~~l~~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...++..|++++++++|++|..+++++. |++.+| ++.||+||+|++.+.
T Consensus        83 ~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~  132 (357)
T 4a9w_A           83 AQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWG  132 (357)
T ss_dssp             HHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGG
T ss_pred             HHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCC
Confidence            3455667999999999999999999988 998888 899999999999753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.95  E-value=3.3e-09  Score=110.36  Aligned_cols=55  Identities=9%  Similarity=-0.028  Sum_probs=44.0

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEcc---C--ceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTK---G--NSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~---G--~~~~ad~VV~a~~~~~~  311 (487)
                      ..+...|++   +.|++|+.+++|++|..+++++ +|++.+   |  .++.||.||+|++++..
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~  233 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD  233 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchH
Confidence            456666654   4699999999999999998875 677654   3  47899999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.95  E-value=1e-09  Score=109.35  Aligned_cols=46  Identities=9%  Similarity=0.096  Sum_probs=38.1

Q ss_pred             hcCCeEEeCCceEEEEEeC-CEEEEEE-ccCc--eEecCEEEEccCCCCC
Q 043512          266 RSDVALHLHEEIESISYLR-EYYELNS-TKGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~-~~v~V~~-~~G~--~~~ad~VV~a~~~~~~  311 (487)
                      +.|++|+++++|++|..++ +++.|++ .+|+  +++||.||.|.+.+..
T Consensus       115 ~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~  164 (394)
T 1k0i_A          115 ACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI  164 (394)
T ss_dssp             HTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS
T ss_pred             hcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH
Confidence            3589999999999998764 4567776 6886  6999999999999864

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.94  E-value=3.8e-09  Score=100.24  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=35.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~GG   63 (487)
                      .+||+|||||++|+++|+.|++     . |.+|+|+|+++.+||
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~-----~~G~~V~viEk~~~~gg   77 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISK-----NPNVQVAIIEQSVSPGG   77 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-----STTSCEEEEESSSSCCT
T ss_pred             ccCEEEECccHHHHHHHHHHHH-----cCCCeEEEEECCCCCCC
Confidence            4699999999999999999999     8 999999999988876

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.93  E-value=2.8e-09  Score=110.64  Aligned_cols=47  Identities=9%  Similarity=-0.060  Sum_probs=41.0

Q ss_pred             HHhcCCeEEeCCceEEEEEeCC----EEEEEEccC---ceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLRE----YYELNSTKG---NSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~----~v~V~~~~G---~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|..+++    ++.|++.++   .+++||.||.|.+.+.
T Consensus       130 a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          130 ARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            3456999999999999999988    888887776   6899999999999986

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.92  E-value=3.8e-09  Score=107.07  Aligned_cols=51  Identities=8%  Similarity=-0.024  Sum_probs=41.2

Q ss_pred             HHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEcc---Cc---eEecCEEEEccCCCC
Q 043512          260 AAGLINRSDVALHLHEEIESISYLREYYELNSTK---GN---SYTCQITVVATPLDE  310 (487)
Q Consensus       260 ~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~---~~~ad~VV~a~~~~~  310 (487)
                      .+..++..+..|+++++|++|..+++++.|++.+   |+   ++.||.||+|++.+.
T Consensus       121 l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          121 QRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             HHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            3444455567899999999999988888888766   76   799999999999854

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.89  E-value=4.7e-09  Score=105.08  Aligned_cols=37  Identities=30%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~~G   62 (487)
                      .+||+|||||++||++|..|++     .|.+ |+|+||++.++
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~-----~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQ-----AGIGKVTLLESSSEIR   41 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEESSSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCCeEEEEECCCCcc
Confidence            4799999999999999999999     9999 99999987764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.88  E-value=1.4e-09  Score=113.26  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=40.6

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEE--ccC-ceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNS--TKG-NSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~--~~G-~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|+.+++++.|++  .+| ++++||.||.|.+.+.
T Consensus       158 a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          158 AREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            3446999999999999998888887776  677 6899999999999986

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.87  E-value=3.8e-09  Score=103.75  Aligned_cols=45  Identities=22%  Similarity=0.420  Sum_probs=38.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCC-EEEEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLRE-YYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +..|++++++++|++|..+++ .+.|++.+|+++.+|.||+|++..
T Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~  130 (360)
T 3ab1_A           85 ERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLG  130 (360)
T ss_dssp             HTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTC
T ss_pred             HHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCC
Confidence            345789999999999998765 678888888889999999999984

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.86  E-value=5.2e-09  Score=101.64  Aligned_cols=45  Identities=18%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +..+++++++++|++|..+++.+.|.+.+|+++.+|.||+|++..
T Consensus        76 ~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  120 (335)
T 2zbw_A           76 APFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVG  120 (335)
T ss_dssp             GGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTS
T ss_pred             HHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCC
Confidence            345788999999999998887888888888889999999999974

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.86  E-value=2.5e-09  Score=110.35  Aligned_cols=48  Identities=17%  Similarity=0.138  Sum_probs=38.8

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEE---EEEEccCc--eEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYY---ELNSTKGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v---~V~~~~G~--~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++|+++++|++|..+++++   .+.+.+|+  +++||.||.|.+.+..
T Consensus       121 a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S~  173 (512)
T 3e1t_A          121 SERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRTR  173 (512)
T ss_dssp             HHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTCS
T ss_pred             HHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcchH
Confidence            345799999999999999988864   34445674  7999999999999864

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.85  E-value=4.1e-09  Score=109.99  Aligned_cols=47  Identities=9%  Similarity=0.114  Sum_probs=38.8

Q ss_pred             HHhcCCeEEeCCceEEEEEe-CCEEEEEEc-cC--ceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYL-REYYELNST-KG--NSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~-~~~v~V~~~-~G--~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+.+++|++|..+ ++.++|++. +|  .+++||.||.|.+.+.
T Consensus       138 a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          138 ARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            44579999999999999976 455778776 66  5799999999999875

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.84  E-value=4.4e-08  Score=100.19  Aligned_cols=52  Identities=12%  Similarity=0.194  Sum_probs=43.8

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ......+++.|++|+++++|++|..+++++.|++.+|+++.+|.||+|++..
T Consensus       236 ~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~  287 (484)
T 3o0h_A          236 QLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRV  287 (484)
T ss_dssp             HHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCC
Confidence            3334445567999999999999998888888999999899999999999975

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.84  E-value=1.7e-08  Score=102.66  Aligned_cols=52  Identities=13%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEe---CCE--EEEEEccCc----eEecCEEEEccCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYL---REY--YELNSTKGN----SYTCQITVVATPL  308 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~---~~~--v~V~~~~G~----~~~ad~VV~a~~~  308 (487)
                      ....+..++..|++|+++++|++|..+   ++.  +.|++.+|+    ++.||.||+|++.
T Consensus       130 ~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          130 NDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCC
T ss_pred             HHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCC
Confidence            344455566678899999999999986   443  377777775    8999999999996

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.84  E-value=1.9e-09  Score=104.39  Aligned_cols=44  Identities=11%  Similarity=0.239  Sum_probs=38.0

Q ss_pred             HhcCCeEEeCCceEEEEEeCC-EEEEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLRE-YYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.|++++++++|++|..+++ .+.|.+.+|+ +.+|.||+|++..
T Consensus        78 ~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~  122 (332)
T 3lzw_A           78 AKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNG  122 (332)
T ss_dssp             TTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTS
T ss_pred             HHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCC
Confidence            345889999999999998876 6888888885 9999999999983

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.84  E-value=1.8e-08  Score=96.81  Aligned_cols=39  Identities=33%  Similarity=0.446  Sum_probs=35.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccce
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGGR   64 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GGr   64 (487)
                      .+||+|||||++||++|+.|++     .  |++|+|+|+++.+||.
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~-----~~~G~~V~LiEk~~~~GGg  119 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLST-----LRPDLRITIVEAGVAPGGG  119 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-----HCTTSCEEEEESSSSCCTT
T ss_pred             cCCEEEECccHHHHHHHHHHHh-----cCCCCEEEEEeCCCccCCc
Confidence            5799999999999999999999     6  9999999999887763

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.83  E-value=1.2e-08  Score=98.36  Aligned_cols=44  Identities=9%  Similarity=0.292  Sum_probs=37.0

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.|+++++ ++|++|..+++.+.|.+.+|+++.+|.||+|++..
T Consensus        81 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           81 EKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCC
Confidence            455788888 99999998888888999888899999999999976

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.82  E-value=1.8e-08  Score=103.32  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=37.0

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ....+||+|||||++||++|..|++     .|++|+|+|+++.+|+
T Consensus        89 ~~~~~dVvIVGgG~aGl~aA~~La~-----~G~~V~liEk~~~~g~  129 (497)
T 2bry_A           89 ACTNTKCLVVGAGPCGLRAAVELAL-----LGARVVLVEKRIKFSR  129 (497)
T ss_dssp             TTTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCSSCCC
T ss_pred             ccCCCCEEEECccHHHHHHHHHHHH-----CCCeEEEEEeccccCC
Confidence            3456899999999999999999999     9999999999987764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.81  E-value=1.1e-08  Score=100.69  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=41.8

Q ss_pred             HHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          260 AAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       260 ~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+++..|++++++++|++|..+++++.|.+.+| ++.||+||+|++...
T Consensus        94 l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           94 LQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             HHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            34455667999999999999998877788888777 699999999999864

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.81  E-value=1.6e-08  Score=102.55  Aligned_cols=47  Identities=11%  Similarity=0.003  Sum_probs=38.5

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEE-EEEEc---cCc--eEecCEEEEccCCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYY-ELNST---KGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~~~ad~VV~a~~~~~~  311 (487)
                      ++.|++|+++++|++|..+++++ +|++.   +|+  +++||.||.|.+.+..
T Consensus       111 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~  163 (453)
T 3atr_A          111 QDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS  163 (453)
T ss_dssp             HHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred             HHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence            34699999999999999888876 35553   665  7999999999998864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.80  E-value=1.6e-08  Score=105.74  Aligned_cols=42  Identities=33%  Similarity=0.563  Sum_probs=37.6

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCC------CCeEEEEecCCCccce
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNW------HPRILMFERNGVVGGR   64 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~------G~~V~VlE~~~~~GGr   64 (487)
                      ..+.+||+|||||++||++|+.|++     .      |.+|+|+||.+.+|+.
T Consensus        32 ~~~~~DVvIVGaG~aGlaaA~~La~-----~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           32 FAEEADVVIVGAGPAGLSAATRLKQ-----LAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             CEEECSEEEECCSHHHHHHHHHHHH-----HHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cccCCCEEEECcCHHHHHHHHHHHh-----cccccCCCCcEEEEeCCCCCCCc
Confidence            3445899999999999999999999     7      9999999999888864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.80  E-value=6.9e-09  Score=100.68  Aligned_cols=45  Identities=9%  Similarity=0.146  Sum_probs=37.6

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEE---ccCceEecCEEEEccCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNS---TKGNSYTCQITVVATPLD  309 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G~~~~ad~VV~a~~~~  309 (487)
                      +++.|+++++++ |++|..+++.+.+.+   .++.++.+|.||+|++..
T Consensus        94 ~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~  141 (338)
T 3itj_A           94 STKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGAS  141 (338)
T ss_dssp             HHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEE
T ss_pred             HHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCC
Confidence            345688999998 999998888888877   367789999999999874

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.79  E-value=5.1e-08  Score=101.87  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=36.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ..+||+|||||++||+||+.|++     .|.+|+|+||....||.
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~-----~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQ-----SGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSCGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCc
Confidence            45799999999999999999999     99999999998776543

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.79  E-value=5.4e-08  Score=101.53  Aligned_cols=41  Identities=29%  Similarity=0.484  Sum_probs=37.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++||++|+.|++     .|++|+|+|+.+.+||..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~-----~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD-----AGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS-----SSCCEEEECSSSSSCTTG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEecCCCCCcch
Confidence            35799999999999999999999     999999999999888754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.78  E-value=1.5e-08  Score=101.57  Aligned_cols=54  Identities=11%  Similarity=0.069  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++ .|++.+|+++.||.||+|++...
T Consensus       197 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p  251 (415)
T 3lxd_A          197 SEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVP  251 (415)
T ss_dssp             HHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEE
T ss_pred             HHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCcc
Confidence            4445555667799999999999999877766 78899999999999999999764

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.76  E-value=4.7e-08  Score=101.92  Aligned_cols=55  Identities=5%  Similarity=-0.012  Sum_probs=42.0

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEc---cCc--eEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNST---KGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~---~G~--~~~ad~VV~a~~~~~~  311 (487)
                      ..++..+++   +.|++|+.+++|++|..+++++ +|++.   +|+  ++.||.||+|++++..
T Consensus       188 ~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~  251 (571)
T 2rgh_A          188 ARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD  251 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence            345555544   4699999999999999988774 56643   343  6999999999999864

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.72  E-value=1.8e-08  Score=104.34  Aligned_cols=46  Identities=17%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             HHh-cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          264 INR-SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++ .|++| ++++|++|..+++++ +|.+.+|.++.||.||+|++...
T Consensus       133 Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          133 CENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCB
T ss_pred             HHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCc
Confidence            344 48898 688999999887776 79999998999999999999864

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.72  E-value=1.1e-07  Score=100.29  Aligned_cols=54  Identities=17%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNS---TKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+...|.+   +.|++|+.+++|++|..+++++ +|..   .+|+  .+.||.||+|++...
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            356666654   3599999999999999887764 5543   4665  489999999999864

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.71  E-value=2.7e-08  Score=101.48  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=44.6

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++.|.+.+|+++.+|.||+|++...
T Consensus       205 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p  258 (472)
T 3iwa_A          205 SQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSP  258 (472)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCc
Confidence            334444556679999999999999987777888888998999999999999763

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.70  E-value=6.4e-08  Score=92.78  Aligned_cols=44  Identities=11%  Similarity=0.222  Sum_probs=37.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.|+++++ ++|++|..+++.+.|.+.+|+++.+|.||+|++..
T Consensus        70 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~  113 (311)
T 2q0l_A           70 FRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGS  113 (311)
T ss_dssp             HTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCC
Confidence            345788887 89999999888888888888899999999999964

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.69  E-value=2.4e-07  Score=97.07  Aligned_cols=54  Identities=15%  Similarity=0.081  Sum_probs=41.9

Q ss_pred             HHHHHHHHHh---cCCeEEeCCceEEEEEeCCEE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINR---SDVALHLHEEIESISYLREYY-ELNS---TKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~---~G~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+...|.+.   .|++|+.+++|++|..+++++ +|..   .+|+  .+.|+.||+|++...
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4566666553   589999999999999887765 5554   3564  689999999999864

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.68  E-value=7.3e-08  Score=92.13  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=35.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccce
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGGR   64 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GGr   64 (487)
                      +||+|||||++|++||+.|++     .  |++|+|+|+++.+||.
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~-----~~~g~~V~v~e~~~~~ggg  105 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAK-----NRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHH-----HCTTSCEEEECSSSSCCTT
T ss_pred             CCEEEECccHHHHHHHHHHHh-----cCCCCeEEEEecCcccccc
Confidence            499999999999999999999     7  9999999999988763

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.68  E-value=2.7e-07  Score=84.56  Aligned_cols=49  Identities=8%  Similarity=-0.053  Sum_probs=40.0

Q ss_pred             HHhc-CCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCCCe
Q 043512          264 INRS-DVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDELNL  313 (487)
Q Consensus       264 ~~~~-G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~~~  313 (487)
                      +++. |++++ +++|++|..+++++ .|.+.+|++++||.||+|++.+....
T Consensus        78 ~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~  128 (232)
T 2cul_A           78 LEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGAR  128 (232)
T ss_dssp             HHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCE
T ss_pred             HHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhc
Confidence            4454 78888 68999999888876 78888888899999999999865433

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.68  E-value=5.2e-08  Score=99.06  Aligned_cols=44  Identities=18%  Similarity=0.365  Sum_probs=36.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe---EEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR---ILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~---V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++...  .|++   |+|+|+++.+||.+.
T Consensus         2 ~~~V~IIGaG~aGl~aA~~L~~~~~--~G~~~~~V~v~E~~~~~GG~w~   48 (464)
T 2xve_A            2 ATRIAILGAGPSGMAQLRAFQSAQE--KGAEIPELVCFEKQADWGGQWN   48 (464)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHHH--TTCCCCEEEEECSSSSSCGGGS
T ss_pred             CCcEEEECccHHHHHHHHHHHhhhh--cCCCCCcEEEEEcCCCCCCEee
Confidence            3799999999999999999987322  5788   999999988988654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.67  E-value=2.4e-07  Score=87.88  Aligned_cols=41  Identities=7%  Similarity=0.011  Sum_probs=35.1

Q ss_pred             CCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          268 DVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +++++ +++|++|..+++++.|.+.+|+++.+|.||+|++..
T Consensus        71 ~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~  111 (297)
T 3fbs_A           71 TIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVT  111 (297)
T ss_dssp             TEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCE
T ss_pred             CeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCC
Confidence            44554 569999999988899999999889999999999975

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.67  E-value=5.1e-08  Score=101.30  Aligned_cols=37  Identities=30%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      .+||+|||||++||++|..|++     .|.+|+|+||++.++
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~-----~G~~V~vlEr~~~~~   62 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAH-----RQVGHLVVEQTDGTI   62 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSCSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEeCCCCCC
Confidence            4799999999999999999999     999999999987664

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.67  E-value=1.8e-07  Score=82.07  Aligned_cols=44  Identities=11%  Similarity=0.211  Sum_probs=38.5

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +++.|++++++ +|++|..+++++.|++.+| ++.+|.||+|++..
T Consensus        66 ~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~  109 (180)
T 2ywl_A           66 ARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKD  109 (180)
T ss_dssp             HHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTC
T ss_pred             HHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCC
Confidence            44568999999 9999998877788888888 89999999999975

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.66  E-value=2.9e-08  Score=105.00  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=34.1

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+..+||+|||||++||++|+.|++.    .|++|+|+||++.+
T Consensus        29 ~~~~~dVlIVGaGpaGL~~A~~La~~----~G~~V~viEr~~~~   68 (639)
T 2dkh_A           29 VPSQVDVLIVGCGPAGLTLAAQLAAF----PDIRTCIVEQKEGP   68 (639)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHTTC----TTSCEEEECSSSSC
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHh----CCCCEEEEeCCCCC
Confidence            34457999999999999999999972    39999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.65  E-value=5.6e-08  Score=97.04  Aligned_cols=54  Identities=13%  Similarity=0.163  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++ .|++.+|+++.||.||+|++...
T Consensus       187 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p  241 (404)
T 3fg2_P          187 SSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIP  241 (404)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCcc
Confidence            3444455567799999999999999887776 78899999999999999999753

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.61  E-value=3.9e-08  Score=102.22  Aligned_cols=48  Identities=6%  Similarity=0.113  Sum_probs=39.6

Q ss_pred             HHHh-cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          263 LINR-SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       263 l~~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+++ .|++| ++++|+.|..+++++ +|.+.+|.++.||.||+|++.+..
T Consensus       133 ~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~  182 (651)
T 3ces_A          133 ALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD  182 (651)
T ss_dssp             HHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred             HHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence            3444 58898 688999999877766 888988988999999999998754

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.60  E-value=7.8e-07  Score=93.14  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=41.3

Q ss_pred             HHHHHHHHHh---cC-CeEEeCCceEEEEEeCCEE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINR---SD-VALHLHEEIESISYLREYY-ELNS---TKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~---~G-~~i~~~~~V~~I~~~~~~v-~V~~---~~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+...|.+.   .| ++|+++++|++|..+++++ +|..   .+|+  ++.|+.||+|++...
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s  197 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc
Confidence            4566666553   47 8999999999999887764 4432   5675  689999999999864

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.8e-08  Score=97.56  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++||+||++|++..   .|++|+|+||++.+||.+.
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r---~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNR---PDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHC---TTSCEEEECSSSSCCTTTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhC---CCCeEEEEECCCCCCceEE
Confidence            469999999999999999997521   6999999999999999764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.59  E-value=2.1e-07  Score=98.35  Aligned_cols=53  Identities=8%  Similarity=-0.061  Sum_probs=39.5

Q ss_pred             HHHHHHHHhc-CC-eEEeCCceEEEEEeCC---EE-EEEE---ccCc--eEecCEEEEccCCCC
Q 043512          258 QMAAGLINRS-DV-ALHLHEEIESISYLRE---YY-ELNS---TKGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~-G~-~i~~~~~V~~I~~~~~---~v-~V~~---~~G~--~~~ad~VV~a~~~~~  310 (487)
                      .+....+++. |+ +|+.+++|++|..+++   ++ +|..   .+|+  .+.|+.||+|++...
T Consensus       155 ~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~  218 (643)
T 1jnr_A          155 PIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT  218 (643)
T ss_dssp             HHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred             HHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence            3444444555 99 9999999999998766   65 5543   4564  689999999999764

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.56  E-value=1.5e-07  Score=90.12  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=37.9

Q ss_pred             HHhcCCeEEeCCceEEEEEeC---CEEEEEEccCceEecCEEEEccCCC
Q 043512          264 INRSDVALHLHEEIESISYLR---EYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~---~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +++.|++++++++|+.|..+.   +.+.|.+.+|+++.+|.||+|++..
T Consensus        66 ~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~  114 (310)
T 1fl2_A           66 VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (310)
T ss_dssp             HHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCC
Confidence            345688999999999997653   3578888888889999999999975

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.56  E-value=2e-07  Score=96.08  Aligned_cols=47  Identities=9%  Similarity=0.062  Sum_probs=39.2

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++++.+ +|++|..++++  ++|++.+|++++||.||.|.+.+..
T Consensus       183 a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~  231 (511)
T 2weu_A          183 AIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL  231 (511)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred             HHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence            34569999999 99999985544  5888888888999999999999754

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.56  E-value=6.2e-08  Score=100.65  Aligned_cols=48  Identities=8%  Similarity=0.180  Sum_probs=39.0

Q ss_pred             HHHh-cCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          263 LINR-SDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       263 l~~~-~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+++ .|++|+ +.+|+.|..+++++ +|.+.+|+++.||.||+|++.+..
T Consensus       126 ~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          126 IVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLN  175 (641)
T ss_dssp             HHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred             HHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence            3444 388884 66999999888887 588989989999999999998743

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.55  E-value=2.9e-07  Score=95.48  Aligned_cols=47  Identities=11%  Similarity=0.142  Sum_probs=38.7

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +++.|++++.+ +|++|..++++  +.|++.+|++++||.||.|.+.+..
T Consensus       175 a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~  223 (538)
T 2aqj_A          175 AVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL  223 (538)
T ss_dssp             HHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred             HHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence            34569999999 89999886543  5788888888999999999998754

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.54  E-value=5.1e-07  Score=91.86  Aligned_cols=36  Identities=33%  Similarity=0.564  Sum_probs=32.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ||+|||||++|++||+.|++     .|.+|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~-----~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR-----AGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-----TTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHH-----CCCCEEEEeCC-CCCch
Confidence            79999999999999999999     99999999998 55553

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.50  E-value=7e-08  Score=92.65  Aligned_cols=41  Identities=32%  Similarity=0.552  Sum_probs=37.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||+||++||.+|++     .|++|+|+|+. .+||.+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~-----~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASR-----ANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-CTTGGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-----CCCCEEEEecC-CCCCeee
Confidence            46899999999999999999999     99999999995 6888764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.48  E-value=3.6e-07  Score=94.92  Aligned_cols=49  Identities=10%  Similarity=0.132  Sum_probs=40.0

Q ss_pred             HHHHhc-CCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512          262 GLINRS-DVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       262 ~l~~~~-G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+++. |++|+++ +|++|..++++  ++|++.+|+++.||.||.|++.+..
T Consensus       202 ~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~  253 (550)
T 2e4g_A          202 RFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL  253 (550)
T ss_dssp             HHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred             HHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence            334456 9999999 99999886543  5888888988999999999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.43  E-value=7.1e-07  Score=92.00  Aligned_cols=46  Identities=11%  Similarity=0.103  Sum_probs=38.1

Q ss_pred             HhcCCeEEeCCceEEEEEe---CCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYL---REYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~---~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++++.+++|++|..+   ++.+.|.+.+|+++.||.||+|++...
T Consensus       278 ~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          278 SDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            4568899999999999764   235788888898999999999999753

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.41  E-value=2e-06  Score=88.80  Aligned_cols=53  Identities=13%  Similarity=0.064  Sum_probs=40.5

Q ss_pred             HHHHHHHHh-cCCeEEeCCceEEEEEeCCE--EEEEEccCceEecCEEEEccCCCCC
Q 043512          258 QMAAGLINR-SDVALHLHEEIESISYLREY--YELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       258 ~l~~~l~~~-~G~~i~~~~~V~~I~~~~~~--v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.....+++ .|++++.+ +|++|..++++  +.|++.+|++++||.||.|.+.+..
T Consensus       179 ~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~  234 (526)
T 2pyx_A          179 QLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL  234 (526)
T ss_dssp             HHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred             HHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence            333333445 79999999 59999886543  4788888778999999999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.39  E-value=7.4e-07  Score=88.16  Aligned_cols=41  Identities=12%  Similarity=0.135  Sum_probs=35.5

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      +.|++++++++|++|..++.  .|++.+|+++.+|++|+|++.
T Consensus        74 ~~~i~~~~~~~V~~id~~~~--~v~~~~g~~~~yd~lvlAtG~  114 (385)
T 3klj_A           74 KNNIKVITSEFATSIDPNNK--LVTLKSGEKIKYEKLIIASGS  114 (385)
T ss_dssp             HTTCEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred             HCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEecCC
Confidence            56889999999999987665  466788989999999999996

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.31  E-value=5.2e-07  Score=88.55  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +++||+|||||++|+++|+.|++     +|++|+|+||...
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~-----~G~~V~vle~~~~   40 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILAR-----KGYSVHILARDLP   40 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-----CCCEEEEEeccCC
Confidence            46899999999999999999999     9999999999863

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.31  E-value=3.2e-07  Score=87.89  Aligned_cols=35  Identities=29%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+||+|||||+||++||.+|++     .|++|+|+|+..
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~-----~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGR-----SSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-----TTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEecCC
Confidence            35899999999999999999999     999999999975

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.31  E-value=3.8e-07  Score=87.19  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||+||++||.+|++     .|++|+|+|+. .+||..
T Consensus         6 ~yDVvIIGaGpAGlsAA~~lar-----~g~~v~lie~~-~~gg~~   44 (304)
T 4fk1_A            6 YIDCAVIGAGPAGLNASLVLGR-----ARKQIALFDNN-TNRNRV   44 (304)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECS-CCGGGG
T ss_pred             CcCEEEECCCHHHHHHHHHHHH-----CCCCEEEEeCC-CCCCee
Confidence            4799999999999999999999     99999999996 467654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.30  E-value=3.5e-07  Score=93.68  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      +.+||+|||||++|++||..|++     .|++|+|+|+++.+||.|.
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~-----~G~~V~liEk~~~~GG~~~   65 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQ-----LGMKVAVVEKRSTYGGTCL   65 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCccc
Confidence            45899999999999999999999     9999999999999999653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.28  E-value=5.8e-07  Score=90.87  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=38.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...+||+|||||++||+||+.|++     .|++|+|+|+.+.+||..
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~-----~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRA-----KGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHH-----HTCCEEEECSSSSCSTHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEeccCCCCCee
Confidence            456899999999999999999999     999999999999999865

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.28  E-value=1.4e-06  Score=92.45  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+||+|||||++||++|..|++......|++|+|+||++.
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~   47 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence            5799999999999999999998100003899999999764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.24  E-value=7.8e-07  Score=91.78  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=40.0

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+..+||+|||||++|++||+.|++     .|++|+|+|+++.+||.+.
T Consensus        39 ~~~~~~dVvIIGgG~aGl~aA~~l~~-----~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           39 NDPREYDAIFIGGGAAGRFGSAYLRA-----MGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSCHHH
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHH-----CCCCEEEEeCCCCCCCccc
Confidence            34456899999999999999999999     9999999999987888654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.24  E-value=3.9e-07  Score=92.65  Aligned_cols=54  Identities=13%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeC-CEEEEEEc--cCc--eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLR-EYYELNST--KGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~-~~v~V~~~--~G~--~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.+.+.+.++|+++++|++|..++ +++.|.+.  +|+  ++.+|.||+|++...
T Consensus       214 ~~~~~~l~~~l~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p  272 (466)
T 3l8k_A          214 QDIVNTLLSILKLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRP  272 (466)
T ss_dssp             HHHHHHHHHHHCCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEE
T ss_pred             HHHHHHHHhcCEEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCc
Confidence            4556666665669999999999999877 78888776  675  799999999998653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.23  E-value=6.4e-07  Score=86.11  Aligned_cols=41  Identities=27%  Similarity=0.446  Sum_probs=36.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||+.|++     .|++|+|+|+ ..+||.+.
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~-----~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAAR-----SGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEES-SSTTGGGG
T ss_pred             CCCcEEEECcCHHHHHHHHHHHh-----CCCcEEEEeC-CCCCcccc
Confidence            45799999999999999999999     9999999999 46888764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.23  E-value=8.7e-07  Score=90.84  Aligned_cols=53  Identities=9%  Similarity=0.022  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeC--------CEEEEEEccC-----ceEecCEEEEccCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLR--------EYYELNSTKG-----NSYTCQITVVATPL  308 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~--------~~v~V~~~~G-----~~~~ad~VV~a~~~  308 (487)
                      +.+..+..+++++..|+++++|++|...+        +.+.|++.++     +++.|+.||+|++.
T Consensus       147 ~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          147 FEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            34445555666777899999999998754        2478887654     36899999999994

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.21  E-value=6e-07  Score=87.66  Aligned_cols=37  Identities=22%  Similarity=0.188  Sum_probs=33.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC------CeEEEEecCCCccc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH------PRILMFERNGVVGG   63 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G------~~V~VlE~~~~~GG   63 (487)
                      +||+|||||++|+++|+.|++     +|      .+|+|+|++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~-----~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHE-----RYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHH-----hccccCCCceEEEEECCCCCCC
Confidence            589999999999999999999     87      99999999864433

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.21  E-value=6.6e-07  Score=91.07  Aligned_cols=41  Identities=27%  Similarity=0.368  Sum_probs=38.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~-----~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ-----LGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCcCCcCC
Confidence            5799999999999999999999     9999999999988998754

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.21  E-value=5.7e-07  Score=86.06  Aligned_cols=52  Identities=6%  Similarity=-0.008  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEE-EEEEc--cCc--eEecCEEEEccCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYY-ELNST--KGN--SYTCQITVVATPL  308 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v-~V~~~--~G~--~~~ad~VV~a~~~  308 (487)
                      ..+.+.+.++.|++|+++++|++|..+++++ .|++.  +|+  ++.+|.||++++.
T Consensus       186 ~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~  242 (315)
T 3r9u_A          186 PSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGL  242 (315)
T ss_dssp             HHHHHHHHHCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCE
T ss_pred             HHHHHHHHhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcC
Confidence            4566677777899999999999999887654 45544  775  7899999999886

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.21  E-value=6e-07  Score=91.20  Aligned_cols=51  Identities=10%  Similarity=0.039  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCE-EEEE-EccCceEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREY-YELN-STKGNSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v~V~-~~~G~~~~ad~VV~a~~~~  309 (487)
                      +.....+++.|++|+++++|++|..++++ +.|+ +.+|+ +.+|.||+|++..
T Consensus       215 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~  267 (463)
T 4dna_A          215 RGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRM  267 (463)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEE
T ss_pred             HHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcc
Confidence            33444455679999999999999987555 6888 88887 9999999999875

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.21  E-value=8.8e-07  Score=94.54  Aligned_cols=44  Identities=23%  Similarity=0.363  Sum_probs=40.1

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+..+||+|||||++|++||+.|++     .|++|+|+|+++.+||.+.
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~-----~G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGV-----RGYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSSSSSCTHHH
T ss_pred             ccccceEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCCCCEee
Confidence            3456899999999999999999999     9999999999999998765

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.20  E-value=8.3e-07  Score=85.56  Aligned_cols=41  Identities=29%  Similarity=0.506  Sum_probs=37.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|++ .+||.+.
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~-----~g~~v~lie~~-~~gg~~~   47 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGR-----AQLSTLILEKG-MPGGQIA   47 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-CTTGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-----cCCcEEEEeCC-CCCcccc
Confidence            35799999999999999999999     99999999998 6888764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.19  E-value=9.4e-07  Score=90.12  Aligned_cols=52  Identities=10%  Similarity=0.115  Sum_probs=41.2

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~~~  309 (487)
                      ......+++.|++|+++++|++|..+++++.|++.++   +++.+|.||+|++..
T Consensus       225 ~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~  279 (476)
T 3lad_A          225 KEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRR  279 (476)
T ss_dssp             HHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCc
Confidence            3444445567999999999999998887777776654   679999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1e-06  Score=89.76  Aligned_cols=42  Identities=33%  Similarity=0.440  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +..+||+|||||++|++||..|++     .|++|+|+|+++.+||.+
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~-----~g~~V~liE~~~~~GG~~   45 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQ-----LGFKTTCIEKRGALGGTC   45 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSSSCCSH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCccccc
Confidence            346899999999999999999999     999999999998899865

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.17  E-value=7.1e-07  Score=90.96  Aligned_cols=42  Identities=31%  Similarity=0.413  Sum_probs=38.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +..+||+|||||++|++||..|++     .|++|+|+|+++.+||.+
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~-----~g~~V~liE~~~~~GG~~   45 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQ-----LGFKTVCIEKNETLGGTC   45 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSSSSSHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCCCcCCcc
Confidence            346899999999999999999999     999999999998899865

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.14  E-value=9.2e-07  Score=90.24  Aligned_cols=53  Identities=6%  Similarity=-0.002  Sum_probs=41.7

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCE--EEEEEccC-ceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREY--YELNSTKG-NSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~--v~V~~~~G-~~~~ad~VV~a~~~~  309 (487)
                      .+.....+++.|++|+++++|++|..++++  +.|++.+| +++.+|.||+|++..
T Consensus       229 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  284 (479)
T 2hqm_A          229 QNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRK  284 (479)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCC
Confidence            334444455679999999999999876544  68888888 789999999999864

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.14  E-value=1e-06  Score=87.86  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=37.5

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceE---------EEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIE---------SISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~---------~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.+.|.+   +.|++|+++++|+         +|..+++++.|++.+| ++.||.||+|++.+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccH
Confidence            445555544   4599999999999         8887777788888777 899999999999985

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.14  E-value=1.5e-06  Score=85.79  Aligned_cols=35  Identities=29%  Similarity=0.301  Sum_probs=32.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVV   61 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~   61 (487)
                      +||+|||||++||++|..|++     .  |++|+|+||++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~-----~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQ-----ARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----cCCCCCEEEEECCCCC
Confidence            489999999999999999999     7  9999999998765

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.14  E-value=1.3e-06  Score=87.89  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+++||+|||||++||++|+.|++     .|++|+|+|++.
T Consensus        19 ~~m~~~ViIVGaGpaGl~~A~~La~-----~G~~V~viE~~~   55 (430)
T 3ihm_A           19 SHMKKRIGIVGAGTAGLHLGLFLRQ-----HDVDVTVYTDRK   55 (430)
T ss_dssp             ----CEEEEECCHHHHHHHHHHHHH-----TTCEEEEEESCC
T ss_pred             CcCCCCEEEECCcHHHHHHHHHHHH-----CCCeEEEEcCCC
Confidence            3456899999999999999999999     999999999976

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.14  E-value=2.5e-05  Score=77.14  Aligned_cols=46  Identities=24%  Similarity=0.314  Sum_probs=40.7

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|..+++++.|++.+|+++.+|.||+|++...
T Consensus       198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p  243 (384)
T 2v3a_A          198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRP  243 (384)
T ss_dssp             HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCc
Confidence            4568999999999999988888888898998999999999998754

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.13  E-value=1.6e-06  Score=89.03  Aligned_cols=55  Identities=13%  Similarity=0.011  Sum_probs=44.3

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEEEEEEc---cCc--eEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYYELNST---KGN--SYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VV~a~~~~~~  311 (487)
                      ..+...|++   +.|++|+.+++|++|..+++.++|++.   +|+  ++.||.||+|++.+..
T Consensus       149 ~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          149 ARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            456666654   459999999999999988876777773   565  7999999999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.12  E-value=1.3e-06  Score=88.61  Aligned_cols=50  Identities=6%  Similarity=0.070  Sum_probs=42.4

Q ss_pred             HHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          261 AGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       261 ~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+++.|++|+++++|++|..+++++.|++.+|+++.+|.||+|++...
T Consensus       215 ~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p  264 (455)
T 2yqu_A          215 ERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRP  264 (455)
T ss_dssp             HHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCc
Confidence            33445569999999999999988888888888888999999999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.12  E-value=8.9e-07  Score=90.83  Aligned_cols=55  Identities=9%  Similarity=-0.014  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+.....+++.|++|+++++|++|..+++++.|++.+|+++.+|.||+|++...
T Consensus       225 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p  279 (499)
T 1xdi_A          225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVP  279 (499)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCc
Confidence            3444455566779999999999999987777888888888999999999998763

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.11  E-value=1.1e-06  Score=89.65  Aligned_cols=40  Identities=25%  Similarity=0.355  Sum_probs=36.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|++ .+||.|
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~-----~G~~V~liE~~-~~GG~~   58 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAE-----LGARAAVVESH-KLGGTC   58 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-CTTHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-CCCCcc
Confidence            35899999999999999999999     99999999986 688865

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.11  E-value=1.8e-06  Score=88.96  Aligned_cols=41  Identities=24%  Similarity=0.412  Sum_probs=36.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC--------Ccccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG--------VVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~--------~~GGr~   65 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|+++        .+||.|
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~-----~G~~V~liEk~~~~~~~~~~~~GGtc   79 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQ-----YGKKVMVLDFVTPTPLGTRWGLGGTC   79 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECCCCCCTTCCCCCTTCHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEeccCccccccCCCccccc
Confidence            35799999999999999999999     999999999964        577754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.10  E-value=2e-06  Score=87.49  Aligned_cols=51  Identities=12%  Similarity=0.167  Sum_probs=41.0

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .....+++.|++|+++++|++|..+++.+.|.+.+ .++.+|.||+|++...
T Consensus       221 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~-~~i~aD~Vv~a~G~~p  271 (467)
T 1zk7_A          221 AVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTH-GELRADKLLVATGRTP  271 (467)
T ss_dssp             HHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETT-EEEEESEEEECSCEEE
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECC-cEEEcCEEEECCCCCc
Confidence            33444556799999999999999887777787764 4899999999998763

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.10  E-value=1.2e-06  Score=89.58  Aligned_cols=53  Identities=4%  Similarity=-0.121  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEcc----CceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTK----GNSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~----G~~~~ad~VV~a~~~~  309 (487)
                      .+.....+++.|++|+++++|++|..+++++.|++.+    |+++.+|.||+|++..
T Consensus       229 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~  285 (482)
T 1ojt_A          229 VKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRA  285 (482)
T ss_dssp             HHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEE
T ss_pred             HHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCC
Confidence            3444445566799999999999999887777777766    7789999999999865

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.09  E-value=2.6e-06  Score=91.41  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ...+||+|||||++|++||+.|++     .|++|+|+|+++.+||.+.
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~-----~G~~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME-----SGYTVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSTTTTHH
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH-----CCCeEEEEeCCCCcCCeee
Confidence            346899999999999999999999     9999999999999998765

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.09  E-value=1.3e-06  Score=88.64  Aligned_cols=41  Identities=29%  Similarity=0.336  Sum_probs=37.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++|++||..|++     .|++|+|+|+ +.+||.|.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-----~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ-----LGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-----HTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-----CCCEEEEEcc-CCCCCcCC
Confidence            45899999999999999999999     9999999999 67898764

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.08  E-value=1.6e-06  Score=88.64  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=37.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec--------CCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER--------NGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~--------~~~~GGr~   65 (487)
                      +..+||+|||||++|++||..|++     .|++|+|+||        ...+||.|
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~-----~G~~V~liEk~~~~~~~~~~~~GGtc   53 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQ-----LGKKVAVADYVEPSPRGTKWGLGGTC   53 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECCCCCCTTSCCCCTTCHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEEecccccccccCCcCCee
Confidence            346899999999999999999999     9999999998        45678755

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.07  E-value=1.7e-06  Score=88.24  Aligned_cols=40  Identities=30%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+++.+||.+
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~-----~G~~V~liE~~~~~GG~~   44 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQ-----LGFNTACVEKRGKLGGTC   44 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCCCcCCcc
Confidence            5799999999999999999999     999999999988898865

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.06  E-value=1.9e-06  Score=83.53  Aligned_cols=42  Identities=29%  Similarity=0.420  Sum_probs=37.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+.+||+|||||++|+++|+.|++     .|++|+|+|+. .+||.+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~-----~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAAR-----AQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHH-----TTCCCEEECCS-SCSCGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-----CCCeEEEEecC-CCCCcee
Confidence            456899999999999999999999     99999999985 6788653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.06  E-value=2e-06  Score=87.25  Aligned_cols=52  Identities=12%  Similarity=0.044  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc-eEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN-SYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~-~~~ad~VV~a~~~~  309 (487)
                      +.....+++.|++|+++++|++|..+++++.|++.+|+ ++.+|.||+|++..
T Consensus       211 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~  263 (463)
T 2r9z_A          211 ATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRA  263 (463)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCC
Confidence            33444455679999999999999987777888888998 89999999999865

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.06  E-value=2.2e-06  Score=87.47  Aligned_cols=52  Identities=6%  Similarity=-0.017  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCC-EEEEEEccCc-----eEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLRE-YYELNSTKGN-----SYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~-----~~~ad~VV~a~~~~  309 (487)
                      +.....+++.|++|+++++|++|..+++ .+.|++.+++     ++.+|.||+|++..
T Consensus       231 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~  288 (483)
T 3dgh_A          231 ELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRK  288 (483)
T ss_dssp             HHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccc
Confidence            3444445567999999999999998654 4667766653     78999999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=2.1e-06  Score=87.02  Aligned_cols=53  Identities=4%  Similarity=0.013  Sum_probs=41.2

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEc---cCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNST---KGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~~~~ad~VV~a~~~~~  310 (487)
                      +.....+++.|++|+++++|++|..+++++.|++.   +++++.+|.||+|++...
T Consensus       215 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p  270 (455)
T 1ebd_A          215 AIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRP  270 (455)
T ss_dssp             HHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCc
Confidence            33444455679999999999999988777776654   456899999999998653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.04  E-value=2.4e-06  Score=87.56  Aligned_cols=53  Identities=4%  Similarity=0.132  Sum_probs=42.1

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCC-EEEEEEccCce-EecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLRE-YYELNSTKGNS-YTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~-~~ad~VV~a~~~~~  310 (487)
                      ......+++.|++|+++++|++|..+++ .+.|++.+|++ +.+|.||+|++...
T Consensus       221 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p  275 (500)
T 1onf_A          221 NVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSP  275 (500)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCC
T ss_pred             HHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCc
Confidence            3344445567999999999999987653 47888888987 99999999998653

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.04  E-value=1.9e-06  Score=87.22  Aligned_cols=52  Identities=15%  Similarity=0.125  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +.....+++.|++|+++++|++|..++++ +.|++.+|+++.+|.||+|++..
T Consensus       212 ~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~  264 (450)
T 1ges_A          212 ETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGRE  264 (450)
T ss_dssp             HHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCC
Confidence            34444455679999999999999876544 78888899889999999999865

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.02  E-value=2.4e-06  Score=87.42  Aligned_cols=39  Identities=21%  Similarity=0.387  Sum_probs=36.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|++ .+||.|
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~-----~G~~V~liE~~-~~GGtc   46 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK-----HTDKVVLIEGG-AYGTTC   46 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-----TCSCEEEEESS-CSSCHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeCC-CCCCcc
Confidence            4799999999999999999999     99999999996 588865

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.01  E-value=2.5e-06  Score=82.39  Aligned_cols=41  Identities=27%  Similarity=0.531  Sum_probs=36.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec----CCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER----NGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~----~~~~GGr~~   66 (487)
                      .+||+|||||++|+++|+.|++     .|++|+|+|+    ...+||.+.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~-----~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAAR-----AELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeccCccccCCCceee
Confidence            4799999999999999999999     9999999999    566787653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.99  E-value=3.9e-06  Score=88.13  Aligned_cols=39  Identities=28%  Similarity=0.325  Sum_probs=36.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      .+||+|||||++|++||+.|++     .|++|+|+|+.+..||.
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~-----~G~~V~liE~~~~~gg~   84 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVG-----AGYKVAMFDIGEIDSGL   84 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCCCSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHh-----CCCcEEEEeccCCCCCc
Confidence            5799999999999999999999     99999999999888873

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.99  E-value=5.8e-06  Score=87.95  Aligned_cols=42  Identities=19%  Similarity=0.445  Sum_probs=38.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...+||+|||||++|++||..|++     .|++|+|+|+++.+||..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~-----~g~~V~lie~~~~~gg~~  412 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA-----RGHQVTLFDAHSEIGGQF  412 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-----TTCEEEEEESSSSSCTTH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCCCCCCee
Confidence            346899999999999999999999     999999999999999865

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.98  E-value=5.6e-05  Score=76.38  Aligned_cols=36  Identities=14%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||.+|+.+|..|++     .|.+|+|+|+.+++
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~-----~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHR-----LGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCEEEEEecCCcc
Confidence            4689999999999999999999     99999999998763

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.98  E-value=3.1e-06  Score=81.24  Aligned_cols=40  Identities=20%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||+.|++     .|++|+|+|+. .+||.+.
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~-----~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAAR-----ANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-----TTCCCEEECCS-STTGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEccC-CCCceEe
Confidence            5799999999999999999999     99999999975 6888653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.97  E-value=4.9e-05  Score=77.02  Aligned_cols=45  Identities=7%  Similarity=0.100  Sum_probs=38.1

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEc-c--Cc--eEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNST-K--GN--SYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~--G~--~~~ad~VV~a~~~~  309 (487)
                      ++.|++|+++++|++|..+++++.|++. +  |+  ++.+|.||+|++..
T Consensus       221 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~  270 (464)
T 2eq6_A          221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRK  270 (464)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEE
T ss_pred             HhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcc
Confidence            4568999999999999988877777765 6  76  89999999999865

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.97  E-value=4e-06  Score=84.79  Aligned_cols=53  Identities=15%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++.|.+.+| ++.+|.||+|++...
T Consensus       192 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          192 VAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCC
Confidence            34444555667999999999999998777788888777 899999999999764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.97  E-value=3.3e-06  Score=85.73  Aligned_cols=53  Identities=13%  Similarity=0.105  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEc-cC--ceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNST-KG--NSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~-~G--~~~~ad~VV~a~~~~  309 (487)
                      .+.....+++.|++|+++++|++|..+++++.|.+. +|  +++.+|.||+|++..
T Consensus       215 ~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~  270 (464)
T 2a8x_A          215 SKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFA  270 (464)
T ss_dssp             HHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEE
T ss_pred             HHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCC
Confidence            344444556679999999999999987766767664 56  679999999999865

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.91  E-value=5.1e-06  Score=84.35  Aligned_cols=39  Identities=31%  Similarity=0.391  Sum_probs=35.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+++ +||.|
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~-----~g~~V~lie~~~-~GG~~   44 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ-----LGLKVLAVEAGE-VGGVC   44 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSC-TTHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCC-CCCCC
Confidence            4899999999999999999999     999999999986 77754

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.90  E-value=9.9e-06  Score=78.44  Aligned_cols=37  Identities=24%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +||+|||||++|+.||+.|++     .|++|+|+|++...+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~-----~G~~V~liE~~~~~~t   38 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR-----LGVPVRLFEMRPKRMT   38 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-----TTCCEEEECCTTTSCC
T ss_pred             CCEEEECchHHHHHHHHHHHH-----CCCcEEEEeccCCcCC
Confidence            699999999999999999999     9999999999875443

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.90  E-value=7.2e-06  Score=85.88  Aligned_cols=51  Identities=10%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.....+++.|++|+++++|++|..+++  .|++.+|+++.+|.||+|++...
T Consensus       232 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~v~~~~g~~i~~D~Vi~a~G~~p  282 (588)
T 3ics_A          232 AYVHEHMKNHDVELVFEDGVDALEENGA--VVRLKSGSVIQTDMLILAIGVQP  282 (588)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEGGGT--EEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHcCCEEEECCeEEEEecCCC--EEEECCCCEEEcCEEEEccCCCC
Confidence            3444445567999999999999986555  36677888999999999999753

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.88  E-value=5.2e-06  Score=87.52  Aligned_cols=35  Identities=20%  Similarity=0.564  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC------CCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW------HPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~------G~~V~VlE~~~~   60 (487)
                      .+||+|||||++||+||+.|++     .      |.+|+|+||...
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~-----~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVR-----WADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-----HHHHHCTTCCEEEECSSCT
T ss_pred             EcCEEEECCCHHHHHHHHHHHh-----hccccCCCCcEEEEEecCC
Confidence            5799999999999999999999     7      999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.86  E-value=8.6e-06  Score=82.41  Aligned_cols=41  Identities=32%  Similarity=0.566  Sum_probs=37.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++|++||..|++     .|  ++|+|+|+.+.+||+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~-----~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLK-----HHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-----HCSSCEEEEECSSSSSCTHH
T ss_pred             CCceEEEECcCHHHHHHHHHHHh-----cCCCCCEEEEeCCCcCCcee
Confidence            45799999999999999999999     77  9999999999998875

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.85  E-value=1e-05  Score=90.02  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=37.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++|++||..|++     .|+ +|+|+|+.+.+||..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~-----~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR-----LGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH-----TTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-----cCCCcEEEEeCCCCCCccc
Confidence            36799999999999999999999     999 799999999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.84  E-value=5.2e-06  Score=84.90  Aligned_cols=49  Identities=6%  Similarity=0.045  Sum_probs=40.6

Q ss_pred             HHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          262 GLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       262 ~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ..+++.|++|+++++|++|..+++...|.+.+|+++.+|.||++++...
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p  313 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRP  313 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEE
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCc
Confidence            5556779999999999999865544467788888999999999999764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.84  E-value=0.0001  Score=73.40  Aligned_cols=47  Identities=11%  Similarity=0.203  Sum_probs=39.7

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|..+++...|++.+|+++.||.||++++...
T Consensus       195 l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p  241 (410)
T 3ef6_A          195 LTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEP  241 (410)
T ss_dssp             HHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCee
Confidence            34569999999999999876544588899999999999999999754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.84  E-value=8.8e-06  Score=89.84  Aligned_cols=41  Identities=20%  Similarity=0.425  Sum_probs=38.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++     .|++|+|+|+++.+||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~-----~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASR-----SGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeCCCCCCceec
Confidence            4689999999999999999999     9999999999999999886

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.83  E-value=1.1e-05  Score=81.40  Aligned_cols=41  Identities=27%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ++||+|||||++|++||+.|++..   .|++|+|+|+++.+++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~---~~~~V~vie~~~~~~~~   43 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLK---PEWDVKVFEATEWVSHA   43 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC---TTSEEEEECSSSCCC--
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhC---cCCCEEEEECCCccccC
Confidence            479999999999999999999932   38999999999877653

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.83  E-value=8.1e-06  Score=83.43  Aligned_cols=53  Identities=8%  Similarity=0.089  Sum_probs=42.8

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCC-EEEEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLRE-YYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.....+++.|++|+++++|++|..+++ .+.|++.+|+++.+|.||+|++...
T Consensus       235 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p  288 (490)
T 1fec_A          235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVP  288 (490)
T ss_dssp             HHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCc
Confidence            3444445567999999999999988754 4788888998899999999998653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.82  E-value=0.00012  Score=73.89  Aligned_cols=36  Identities=19%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYAN-----FGTKVTILEGAGEI  205 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEEcCCcc
Confidence            4789999999999999999999     99999999998764

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.81  E-value=9.5e-06  Score=83.82  Aligned_cols=40  Identities=33%  Similarity=0.493  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ...+||+|||||++||+||+.|++      |.+|+|+||.+..||.
T Consensus         6 ~~~~DVvVVG~G~AGl~aAl~la~------G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            6 EHSCDVLIIGSGAAGLSLALRLAD------QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT------TSCEEEECSSCTTC--
T ss_pred             CCCCCEEEECccHHHHHHHHHHhc------CCcEEEEECCCCCCCC
Confidence            346899999999999999999985      7899999998866653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.81  E-value=7.3e-06  Score=83.84  Aligned_cols=53  Identities=8%  Similarity=0.111  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCC-EEEEEEccCceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLRE-YYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      .+.....+++.|++|+++++|++|..+++ .+.|++.+|+++.+|.||+|++..
T Consensus       238 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~  291 (495)
T 2wpf_A          238 REEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRI  291 (495)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCc
Confidence            33444445667999999999999987654 478888899899999999999865

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.79  E-value=1.5e-05  Score=79.46  Aligned_cols=50  Identities=12%  Similarity=0.114  Sum_probs=40.1

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .......+++.|++|+++++|++|.  ++  .|++.+|+++.+|.||++++...
T Consensus       190 ~~~l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~~i~~D~vi~a~G~~p  239 (408)
T 2gqw_A          190 ADFVARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGTRIAADMVVVGIGVLA  239 (408)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCCEEEcCEEEECcCCCc
Confidence            3444455567799999999999998  34  67778898999999999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.78  E-value=0.00011  Score=74.02  Aligned_cols=37  Identities=19%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..++|+|||||.+|+.+|..|++     .|.+|+|+|+.+++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAK-----AGKKVTVIDILDRP  184 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEecCccc
Confidence            45789999999999999999999     99999999997653

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.78  E-value=1.1e-05  Score=83.00  Aligned_cols=52  Identities=6%  Similarity=-0.056  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      +.+...+++.|+++++++.|+++...++++.|.+.+++.+.+|.|++|++-.
T Consensus       267 ~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          267 VKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRK  318 (542)
T ss_dssp             HHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             HHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccccc
Confidence            3344445567999999999999999999999999888899999999999854

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.76  E-value=2.1e-05  Score=78.47  Aligned_cols=37  Identities=30%  Similarity=0.382  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe--EEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR--ILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~--V~VlE~~~~~G   62 (487)
                      ++||+|||||++|++||..|++     .|++  |+|+|+++.++
T Consensus         2 ~~~vvIIGaG~AGl~aA~~L~~-----~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            2 ATHVAIIGNGVGGFTTAQALRA-----EGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEEECSSSSS
T ss_pred             CCCEEEEcccHHHHHHHHHHHc-----cCcCCeEEEEECCCCCC
Confidence            4689999999999999999999     8887  99999988755

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.75  E-value=1.4e-05  Score=81.60  Aligned_cols=54  Identities=13%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++.|++.+|+++.||.||++++...
T Consensus       229 ~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~p  282 (493)
T 1m6i_A          229 SNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEP  282 (493)
T ss_dssp             HHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCc
Confidence            334444556679999999999999987777888889999999999999998763

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.75  E-value=1.8e-05  Score=80.78  Aligned_cols=51  Identities=12%  Similarity=0.266  Sum_probs=38.7

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.....+++.|++|+++++|++|.. ++++ .|.+ +|+++.+|.||+|++...
T Consensus       240 ~~l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          240 DLMAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCcEEECCEEEECCCCCc
Confidence            3444445567999999999999986 4444 4555 677899999999998653

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.74  E-value=1.6e-05  Score=79.13  Aligned_cols=50  Identities=22%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ......++++.|++++++++|++|..  ++  |++.+|+++.+|.||++++...
T Consensus       221 ~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~~~~~D~vi~a~G~~~  270 (409)
T 3h8l_A          221 RKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGNTIPADITILLPPYTG  270 (409)
T ss_dssp             HHHHHHHHHHHTCEEECSCCEEEECS--SE--EEETTSCEEECSEEEEECCEEC
T ss_pred             HHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCCEEeeeEEEECCCCCc
Confidence            34445556677999999999999964  33  6778899999999999988643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.74  E-value=1.9e-05  Score=79.87  Aligned_cols=53  Identities=11%  Similarity=0.123  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEE-EEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYE-LNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~-V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .+.....+++.|++|+++++|++|..+++++. |.+ +|+++.+|.||+|++...
T Consensus       194 ~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p  247 (452)
T 2cdu_A          194 TDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRP  247 (452)
T ss_dssp             HHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEE
T ss_pred             HHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCC
Confidence            33444455677999999999999997677764 554 778899999999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.74  E-value=0.00027  Score=71.47  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.++
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~-----~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRS-----FGSEVTVVALEDR  200 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEEcCCc
Confidence            4689999999999999999999     9999999998765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.73  E-value=0.00022  Score=71.96  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.++
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~  201 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVING-----LGAKTHLFEMFDA  201 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----cCCEEEEEEeCCc
Confidence            4689999999999999999999     9999999999765

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.71  E-value=2.1e-05  Score=79.39  Aligned_cols=51  Identities=14%  Similarity=0.212  Sum_probs=38.5

Q ss_pred             HHHHHHHHhcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          258 QMAAGLINRSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       258 ~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      +.....+++.|++|+++++|++|..+ +++ .|.+ +|+++.+|.||+|++...
T Consensus       195 ~~l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~-~~~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          195 DVLTEEMEANNITIATGETVERYEGD-GRVQKVVT-DKNAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHTTTEEEEESCCEEEEECS-SBCCEEEE-SSCEEECSEEEECSCEEE
T ss_pred             HHHHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEE-CCCEEECCEEEECcCCCC
Confidence            34444455679999999999999865 444 5666 556899999999998653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.71  E-value=0.00014  Score=73.90  Aligned_cols=36  Identities=19%  Similarity=0.334  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSR-----LGSKVTVVEFQPQI  218 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHH-----cCCEEEEEEeCCcc
Confidence            4689999999999999999999     99999999997653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.70  E-value=2.2e-05  Score=80.00  Aligned_cols=51  Identities=8%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             HHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          259 MAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       259 l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .....+++.|++|+++++|++|..+++...|.+.+ .++.+|.||+|++...
T Consensus       232 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~-~~i~~D~vi~a~G~~p  282 (480)
T 3cgb_A          232 YIYKEADKHHIEILTNENVKAFKGNERVEAVETDK-GTYKADLVLVSVGVKP  282 (480)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETT-EEEECSEEEECSCEEE
T ss_pred             HHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECC-CEEEcCEEEECcCCCc
Confidence            33444556799999999999998754333566654 4899999999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.70  E-value=1.6e-05  Score=80.43  Aligned_cols=43  Identities=21%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHH-hcCCCC----CCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQ-YSSKNW----HPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~-~~~~~~----G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||..|++ ..   .    |++|+|+|+.+.+||.++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~---~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAAD---TTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHH---HSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCc---cccCCCCeEEEEecCCCCCCccc
Confidence            4699999999999999999988 42   2    899999999988998763

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.70  E-value=2.3e-05  Score=82.25  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=32.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ...+||+|||||++|++||..|++     .|++|+|+|+
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~-----~g~~v~liE~  138 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAK-----YGAKTAVLDY  138 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECC
T ss_pred             cccccEEEECCCccHHHHHHHHHh-----CCCeEEEEec
Confidence            446899999999999999999999     9999999997

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.69  E-value=2.2e-05  Score=81.31  Aligned_cols=37  Identities=30%  Similarity=0.441  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...+|+||||||++|+++|++|++     +|++|+|+|+...
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~-----~g~~VlvlE~g~~   41 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE-----AGKKVLLLERGGP   41 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSCC
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCCC
Confidence            456899999999999999999999     9999999999764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.69  E-value=2.2e-05  Score=81.69  Aligned_cols=54  Identities=19%  Similarity=0.296  Sum_probs=43.9

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEE-------------------eCCEEEEEEccCceEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISY-------------------LREYYELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~-------------------~~~~v~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      .......+++.|++++++++|++|..                   +++++.+.+.+|+++.+|.||+|++...
T Consensus       195 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  267 (565)
T 3ntd_A          195 AGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRP  267 (565)
T ss_dssp             HHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCcc
Confidence            34444556677999999999999987                   3567788888898999999999999764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.68  E-value=0.00026  Score=72.43  Aligned_cols=36  Identities=14%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+++|||+|..|+-.|..|++     .|.+|+++|+.+++
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~~  217 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTE-----LGVPVTVVASQDHV  217 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHH-----TTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCcc
Confidence            4689999999999999999999     99999999998763

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.67  E-value=0.00034  Score=70.03  Aligned_cols=45  Identities=7%  Similarity=0.128  Sum_probs=38.3

Q ss_pred             HhcCCeEEeCCceEEEEE--eCCEE-EEEEccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISY--LREYY-ELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~--~~~~v-~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.|++|+++++|++|..  +++++ .|++.+|+++.+|.||+|++..
T Consensus       202 ~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~  249 (431)
T 1q1r_A          202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLI  249 (431)
T ss_dssp             HHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEE
T ss_pred             HhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCC
Confidence            456899999999999987  45555 7888899899999999999965

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.67  E-value=3.9e-05  Score=76.96  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCCCcc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNGVVG   62 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~~~G   62 (487)
                      +.+||+|||||++|++||..|++     .|+  +|+|+|+.+.++
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~-----~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRA-----SGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSCCSCC
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHc-----cCcCCCEEEEECCCCCC
Confidence            45899999999999999999999     888  899999986543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.63  E-value=0.00028  Score=71.65  Aligned_cols=45  Identities=11%  Similarity=0.247  Sum_probs=36.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCE-EEEEE-----ccCceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREY-YELNS-----TKGNSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~-v~V~~-----~~G~~~~ad~VV~a~~~~  309 (487)
                      ++.|++|+++++|++|..++++ +.|++     .+++++.+|.||+|++..
T Consensus       231 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~  281 (474)
T 1zmd_A          231 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRR  281 (474)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEE
T ss_pred             HHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCC
Confidence            4568999999999999987765 66663     456789999999999865

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.63  E-value=0.00024  Score=72.47  Aligned_cols=36  Identities=11%  Similarity=0.206  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC---CCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW---HPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~---G~~V~VlE~~~~~   61 (487)
                      ..+++|||||..|+-+|..|++     .   |.+|+|+|+.+++
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~-----~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNA-----YKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-----HSCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----hccCcCeEEEEEcCCCc
Confidence            4689999999999999999999     7   9999999998753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.62  E-value=2.4e-05  Score=80.70  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=31.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+++|+||||||.+|+.+|.+|++.    .|++|+|||+..
T Consensus        14 ~~~~yD~IIVGsG~aG~v~A~rLse~----~~~~VLvLEaG~   51 (526)
T 3t37_A           14 HAPNCDIVIVGGGSAGSLLAARLSED----PDSRVLLIEAGE   51 (526)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHTTS----TTSCEEEECSSB
T ss_pred             CCCCeeEEEECccHHHHHHHHHHHhC----CCCeEEEEcCCC
Confidence            34579999999999999999999972    578999999964

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.61  E-value=0.00054  Score=68.08  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATART-----AGVHVSLVETQPRL  180 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCEEEEEEeCCcc
Confidence            5789999999999999999999     99999999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.60  E-value=0.00037  Score=70.29  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+++|||+|..|+-+|..|++     .|.+|+++|+.+++
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  182 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVK-----MKKTVHVFESLENL  182 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEEccCcc
Confidence            4679999999999999999999     99999999997653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.59  E-value=5e-05  Score=75.34  Aligned_cols=43  Identities=9%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      +.|++++++++|+.++.+++...|.+.+|+++.+|.||++.|.
T Consensus       214 ~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~  256 (401)
T 3vrd_B          214 NALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQ  256 (401)
T ss_dssp             TCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCE
T ss_pred             hcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCc
Confidence            4589999999999999888777889999999999999998765

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.59  E-value=0.00034  Score=71.96  Aligned_cols=47  Identities=4%  Similarity=0.012  Sum_probs=39.3

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCE----EEEEEccCc-eEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREY----YELNSTKGN-SYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~----v~V~~~~G~-~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|..++++    +.|++.+|+ ++.||.||+|++...
T Consensus       265 l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p  316 (523)
T 1mo9_A          265 MKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQP  316 (523)
T ss_dssp             HHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEE
T ss_pred             HHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCcc
Confidence            34569999999999999976554    678888887 899999999999764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.58  E-value=5.2e-05  Score=76.06  Aligned_cols=52  Identities=8%  Similarity=0.196  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC--ceEecCEEEEccCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG--NSYTCQITVVATPLD  309 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~a~~~~  309 (487)
                      ..++++.++++.|+++++++.|++|+  .+++.+...+|  +++.+|.||++++..
T Consensus       202 ~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~~~~i~~d~vi~~~G~~  255 (430)
T 3hyw_A          202 SKRLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPSFQ  255 (430)
T ss_dssp             HHHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEECTTSCEEEEECSEEEEECEEE
T ss_pred             HHHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEeeCCCceEeecceEEEeccCC
Confidence            45677778888899999999999984  55666665554  579999999998864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00048  Score=70.01  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          185 PKKVVVVGAGYIGIELAGVFHG-----LGSETHLVIRGET  219 (479)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCceEEEEeCCc
Confidence            4689999999999999999999     9999999999765

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.57  E-value=0.00025  Score=72.22  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~-----~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYST-----LGSRLDVVEMMDGL  220 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHH-----HTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEECCcc
Confidence            4689999999999999999999     99999999987653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.57  E-value=4.9e-05  Score=74.99  Aligned_cols=34  Identities=29%  Similarity=0.544  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      .+||+|||||++|++||..|++     .|  .+|+|+|+++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~-----~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRK-----LDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHT-----TCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHh-----hCCCCCEEEEECCC
Confidence            5899999999999999999999     88  5799999875

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.54  E-value=4.8e-05  Score=74.59  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      .+.....+++.|++|+++++|++|.  .+  .|++.+|+ +.+|.||+|++..
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~  233 (367)
T 1xhc_A          186 SNMIKDMLEETGVKFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIV  233 (367)
T ss_dssp             HHHHHHHHHHTTEEEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEE
T ss_pred             HHHHHHHHHHCCCEEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCC
Confidence            3444555667799999999999997  23  46677887 9999999999865

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.54  E-value=0.00044  Score=70.01  Aligned_cols=46  Identities=11%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLDE  310 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~~  310 (487)
                      ++.|++|+++++|++|..+++++.|++.  +|  +++.+|.||+|++...
T Consensus       227 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p  276 (468)
T 2qae_A          227 KNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRP  276 (468)
T ss_dssp             HHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEE
T ss_pred             hcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCccc
Confidence            4568999999999999987766766665  66  6799999999998653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.53  E-value=0.00078  Score=67.87  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+++|+.+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSN-----QNYNVNLIDGHERV  184 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT-----TTCEEEEEESSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHh-----cCCEEEEEEcCCch
Confidence            4689999999999999999999     99999999997653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.51  E-value=0.00051  Score=70.09  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC---CCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW---HPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~---G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..|++     .   |.+|+|+|+.+++
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~-----~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNA-----YKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-----HCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----hCCCCCeEEEEEcCCcc
Confidence            4689999999999999999999     7   9999999987653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.50  E-value=6e-05  Score=75.73  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++||+|||||++|++||..|++...  .|++|+|+|+++.
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~--~g~~Vtlie~~~~   41 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALG--SGHEVTLISANDY   41 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHG--GGSEEEEECSSSE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCC--CcCEEEEEeCCCC
Confidence            5799999999999999999998322  6899999999875

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.49  E-value=0.00069  Score=68.52  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=33.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKN-----YGVDVTIVEFLPRA  206 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEEcCCcc
Confidence            4689999999999999999999     99999999998753

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.49  E-value=5.4e-05  Score=77.39  Aligned_cols=38  Identities=21%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+.+++|||||||.||+++|..|++     .+++|+|+|+++.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~-----~~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDT-----KKYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCT-----TTCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhh-----CCCcEEEECCCCC
Confidence            3456789999999999999999999     9999999999863

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=97.48  E-value=0.00074  Score=70.13  Aligned_cols=36  Identities=17%  Similarity=0.255  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHH-----LGIKTTLLELADQV  186 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCcEEEEEcCCcc
Confidence            3589999999999999999999     99999999997653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.47  E-value=6.8e-05  Score=75.32  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=39.3

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ..+.+...+++.|++++++++|+++.  ++  .|++.+|+++.+|.||++++..
T Consensus       190 ~~~~~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~~~~~D~vl~a~G~~  239 (437)
T 4eqs_A          190 MNQPILDELDKREIPYRLNEEINAIN--GN--EITFKSGKVEHYDMIIEGVGTH  239 (437)
T ss_dssp             GGHHHHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSCEEECSEEEECCCEE
T ss_pred             hHHHHHHHhhccceEEEeccEEEEec--CC--eeeecCCeEEeeeeEEEEecee
Confidence            34455556667799999999999885  33  3667899999999999999864

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.46  E-value=0.00067  Score=69.15  Aligned_cols=37  Identities=16%  Similarity=0.309  Sum_probs=33.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ...+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQR-----KGKEVVLIDVVDTC  229 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSST
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-----CCCeEEEEEcccch
Confidence            45789999999999999999999     99999999998753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.46  E-value=0.00073  Score=69.03  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~  210 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKR-----LGIDSYIFARGNR  210 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHT-----TTCEEEEECSSSS
T ss_pred             CCeEEEECChHHHHHHHHHHHH-----cCCeEEEEecCCc
Confidence            5689999999999999999999     9999999999776

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.45  E-value=6.3e-05  Score=78.02  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~~   60 (487)
                      ...+|+||||||.||+++|.+|++     .| .+|+|+|+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse-----~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAE-----NPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTT-----STTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHHh-----CCCCcEEEEecCCC
Confidence            346899999999999999999999     77 79999999754

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.38  E-value=0.0001  Score=75.43  Aligned_cols=38  Identities=24%  Similarity=0.249  Sum_probs=34.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ..+|++|||||++|+++|++|++     .|++|+|+|+....+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~-----~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGE-----AGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-----CCCcEEEEeCCCCCC
Confidence            45899999999999999999999     999999999987544

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.38  E-value=0.00037  Score=70.62  Aligned_cols=47  Identities=9%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEc---cC--ceEecCEEEEccCCCC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNST---KG--NSYTCQITVVATPLDE  310 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~---~G--~~~~ad~VV~a~~~~~  310 (487)
                      +++.|++|+++++|++|..+++++.|++.   +|  +++.+|.||+|++...
T Consensus       228 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p  279 (470)
T 1dxl_A          228 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTP  279 (470)
T ss_dssp             HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEE
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCc
Confidence            34568999999999999876666666654   44  6799999999998653

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.37  E-value=8.1e-05  Score=77.19  Aligned_cols=38  Identities=21%  Similarity=0.235  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....+|+||||||.+|+++|.+|++.    .+.+|+|+|+.+
T Consensus        16 ~~~~yDyIIVGgG~AG~vlA~RLse~----~~~~VLlLEaG~   53 (583)
T 3qvp_A           16 SGRTVDYIIAGGGLTGLTTAARLTEN----PNISVLVIESGS   53 (583)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHTTS----TTCCEEEECSSC
T ss_pred             CCCCccEEEECCcHHHHHHHHHHHhC----CCCcEEEEecCC
Confidence            34579999999999999999999972    589999999976

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.36  E-value=0.00013  Score=74.64  Aligned_cols=40  Identities=25%  Similarity=0.176  Sum_probs=35.5

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ......+|++|||||.+|+++|++|++     .|.+|+|+|+...
T Consensus         6 ~~~~~~~d~~iiG~G~~g~~~a~~l~~-----~~~~v~~~e~~~~   45 (507)
T 1coy_A            6 LADGDRVPALVIGSGYGGAVAALRLTQ-----AGIPTQIVEMGRS   45 (507)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSCC
T ss_pred             CCcCCcCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEECCCC
Confidence            344567899999999999999999999     9999999999754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.35  E-value=0.0014  Score=66.48  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-.|..|++     .|.+|+++|+.++
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~  214 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWAR-----LGAEVTVLEAMDK  214 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCcEEEEecCCC
Confidence            4689999999999999999999     9999999999765

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.34  E-value=0.00078  Score=68.44  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ...+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVE-----LGKKVRMIERNDHI  221 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHH-----TTCEEEEECCGGGT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-----cCCeEEEEEeCCch
Confidence            45789999999999999999999     99999999997654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.32  E-value=0.0013  Score=66.48  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFAR-----LGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEEECCcc
Confidence            4689999999999999999999     99999999997653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.0012  Score=67.36  Aligned_cols=45  Identities=9%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEcc---C--ceEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTK---G--NSYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G--~~~~ad~VV~a~~~~  309 (487)
                      ++.|++|+++++|++|..+++++.|.+.+   |  +++.+|.||+|++..
T Consensus       250 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~  299 (491)
T 3urh_A          250 TKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRK  299 (491)
T ss_dssp             HHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCE
T ss_pred             HhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCc
Confidence            45689999999999999988887776653   5  579999999999875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.29  E-value=0.0012  Score=67.30  Aligned_cols=41  Identities=15%  Similarity=0.051  Sum_probs=35.2

Q ss_pred             CeEEeCCceEEEEEeCCEEEEEEc--cC--ceEecCEEEEccCCC
Q 043512          269 VALHLHEEIESISYLREYYELNST--KG--NSYTCQITVVATPLD  309 (487)
Q Consensus       269 ~~i~~~~~V~~I~~~~~~v~V~~~--~G--~~~~ad~VV~a~~~~  309 (487)
                      ++|+++++|++|..+++++.|++.  +|  +++.+|.||+|++..
T Consensus       229 V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~  273 (492)
T 3ic9_A          229 FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRK  273 (492)
T ss_dssp             SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCE
T ss_pred             cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCc
Confidence            799999999999988877777764  67  689999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.26  E-value=0.003  Score=63.70  Aligned_cols=44  Identities=18%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEc---cCc--eEecCEEEEccCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNST---KGN--SYTCQITVVATPLDE  310 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~---~G~--~~~ad~VV~a~~~~~  310 (487)
                      .|++|+++++|++|..+++++.|++.   +|+  ++.+|.||+|++...
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p  377 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYER  377 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEEC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCC
Confidence            58999999999999998888877775   665  389999999999753

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.19  E-value=0.00016  Score=74.62  Aligned_cols=37  Identities=27%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ...+|+||||||.+|+++|.+|++      |.+|+|+|+....
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse------g~~VlvLEaG~~~   60 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE------KYKVLVLERGSLP   60 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT------TSCEEEECSSBCG
T ss_pred             cCcccEEEECccHHHHHHHHHHhc------CCcEEEEecCCCc
Confidence            345899999999999999999996      6799999997654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.0022  Score=64.81  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+++|||+|..|+-.|..|++     .|.+|+++|+.++
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~-----~g~~Vt~v~~~~~  204 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHG-----LGVKTTLIYRGKE  204 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCeEEEEEcCCc
Confidence            5689999999999999999999     9999999999764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.15  E-value=0.002  Score=61.64  Aligned_cols=35  Identities=23%  Similarity=0.504  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.+.
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~-----~g~~v~~v~~~~~  207 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTK-----YGSKVFMLVRKDH  207 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT-----TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEEcCCc
Confidence            4679999999999999999999     9999999998654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.14  E-value=0.0022  Score=66.96  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  222 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRE-----RGIEVTLVEMANQV  222 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCeEEEEecCCcc
Confidence            4689999999999999999999     99999999987653

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.13  E-value=0.0002  Score=73.96  Aligned_cols=36  Identities=19%  Similarity=0.259  Sum_probs=33.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~   60 (487)
                      +.+|+||||||++|+++|++|++     . |.+|+|+|+...
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~-----~~~~~v~~~e~g~~   48 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSE-----DPAVSVALVEAGPD   48 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTT-----STTSCEEEECSSCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-----CCCCCEEEEecCCc
Confidence            46899999999999999999999     7 899999999865

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.11  E-value=0.0046  Score=63.47  Aligned_cols=33  Identities=12%  Similarity=0.147  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +.+++|||||..|+=.|..+++     .|.+|+|+++.
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~-----lG~~VTii~~~  255 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNS-----LGYDVTVAVRS  255 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----HTCCEEEEESS
T ss_pred             CceEEEECCCHHHHHHHHHHHh-----cCCeEEEeccc
Confidence            4689999999999999999999     99999999874

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.11  E-value=0.00018  Score=74.47  Aligned_cols=37  Identities=19%  Similarity=0.233  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+|+||||||.+|+++|.+|++.    .|.+|+|+|+....
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~----~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTED----PDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTS----TTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhC----cCCcEEEEecCCcc
Confidence            47999999999999999999972    58999999997643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.01  E-value=0.0033  Score=59.72  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.+.
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~  179 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSN-----IASEVHLIHRRDG  179 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT-----TSSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----cCCeEEEEEeCCc
Confidence            4689999999999999999999     9999999998653

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=96.94  E-value=0.0079  Score=60.70  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++|+.+++
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRL-----MGVQTHIIEMLDRA  207 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCEEEEEEeCCcC
Confidence            4689999999999999999999     99999999997653

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.86  E-value=0.00061  Score=70.97  Aligned_cols=37  Identities=22%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+||||||.+|+++|.+|++.    .|.+|+|+|+...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~----~~~~v~~~e~g~~   59 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTEN----PKIKVLVIEKGFY   59 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTS----TTCCEEEEESSCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhC----CCCcEEEEecCCc
Confidence            458999999999999999999982    5899999999754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.72  E-value=0.0065  Score=58.88  Aligned_cols=44  Identities=11%  Similarity=0.172  Sum_probs=35.2

Q ss_pred             hcCCeEEeCCceEEEEEeCCEE-EEEE--ccC--ceEecCEEEEccCCC
Q 043512          266 RSDVALHLHEEIESISYLREYY-ELNS--TKG--NSYTCQITVVATPLD  309 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v-~V~~--~~G--~~~~ad~VV~a~~~~  309 (487)
                      +.|++|+++++|++|..+++++ .|.+  .+|  +++.+|.||++++..
T Consensus       214 ~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~  262 (360)
T 3ab1_A          214 NGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFK  262 (360)
T ss_dssp             HTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBC
T ss_pred             cCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCC
Confidence            4578999999999999887754 5554  367  579999999999864

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=96.65  E-value=0.013  Score=59.48  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+++|||||..|+-.|..|++     .|.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKG-----LGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----cCCEEEEEeCC
Confidence            4689999999999999999999     99999999874

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.49  E-value=0.0031  Score=53.21  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             CCCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           15 QPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      |+......+|+|||+|..|...|..|++     .|++|++++++.
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~-----~g~~V~vid~~~   52 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASS-----SGHSVVVVDKNE   52 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCG
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            4445556789999999999999999999     999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.34  E-value=0.0056  Score=50.59  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=33.5

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .....+|+|||+|-.|...|..|.+     .|++|+++|++.
T Consensus         4 ~~~~~~viIiG~G~~G~~la~~L~~-----~g~~v~vid~~~   40 (140)
T 3fwz_A            4 VDICNHALLVGYGRVGSLLGEKLLA-----SDIPLVVIETSR   40 (140)
T ss_dssp             CCCCSCEEEECCSHHHHHHHHHHHH-----TTCCEEEEESCH
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEECCH
Confidence            4456789999999999999999999     999999999975

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.06  E-value=0.0068  Score=49.70  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|..|...|..|++     .|++|+++|++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~-----~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSE-----KGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            4689999999999999999999     999999999864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.03  E-value=0.0045  Score=60.83  Aligned_cols=36  Identities=22%  Similarity=0.085  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~-----~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIID-----SGTPASIGIILEYP  181 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHH-----HTCCEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCeEEEEEcCCcc
Confidence            3679999999999999999999     99999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.02  E-value=0.0052  Score=58.24  Aligned_cols=34  Identities=18%  Similarity=0.390  Sum_probs=32.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|+|||||..|+-+|..|++     .|.+|+|+|+.++
T Consensus       146 k~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~  179 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTK-----FADKVTIVHRRDE  179 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-----TCSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----cCCEEEEEecccc
Confidence            689999999999999999999     9999999999765

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.80  E-value=0.0091  Score=47.23  Aligned_cols=35  Identities=17%  Similarity=0.356  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      +.++|+|+|+|..|...|..|.+     .| ++|++++++.
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~-----~g~~~v~~~~r~~   39 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKT-----SSNYSVTVADHDL   39 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHH-----CSSEEEEEEESCH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHh-----CCCceEEEEeCCH
Confidence            34689999999999999999999     99 9999999864

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.79  E-value=0.011  Score=48.77  Aligned_cols=34  Identities=21%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|+|+|-.|...|..|.+     .|++|+++|++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~-----~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTA-----AGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence            4679999999999999999999     999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.76  E-value=0.0074  Score=60.77  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRK-----LGAQVSVVEARERI  206 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEEcCCcc
Confidence            4689999999999999999999     99999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.55  E-value=0.011  Score=57.64  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=33.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      .+|+|||||..|+-+|..|++     .|.+|+++|+.+++.
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE-----AGYHVKLIHRGAMFL  179 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-----TTCEEEEECSSSCCT
T ss_pred             CcEEEECCCHHHHHHHHHHHh-----CCCEEEEEeCCCeec
Confidence            689999999999999999999     999999999988754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.50  E-value=0.012  Score=55.77  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||||..|..-|..++.     .|++|+++|.+.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~-----~G~~V~l~D~~~   39 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFAS-----GGFRVKLYDIEP   39 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSCH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            34679999999999999999999     999999999764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=95.28  E-value=0.014  Score=55.09  Aligned_cols=34  Identities=15%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.+
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~-----~G~~Vt~v~~~~  185 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTK-----YGSKVIILHRRD  185 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTT-----TSSEEEEECSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHH-----hCCeeeeecccc
Confidence            4689999999999999999999     999999999754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.26  E-value=0.023  Score=47.57  Aligned_cols=34  Identities=12%  Similarity=0.052  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|+|+|-.|...|..|.+     .|++|+++|+++
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~-----~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQ-----RGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH-----TTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCC
Confidence            4579999999999999999999     999999999963

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.24  E-value=0.018  Score=54.96  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||+|..|.+.|..|++     .|++|+++.++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~-----~g~~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAK-----TGHCVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHH-----TTCEEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCCh
Confidence            4689999999999999999999     999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.18  E-value=0.021  Score=49.45  Aligned_cols=34  Identities=26%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|...|..|.+     . |++|+++|++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~-----~~g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRA-----RYGKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHH-----HHCSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-----ccCCeEEEEECCH
Confidence            4589999999999999999999     9 99999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.07  E-value=0.018  Score=54.67  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||+|..|.+.|..|++     .|++|+++.++.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~-----~g~~V~~~~r~~   35 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQR-----SGEDVHFLLRRD   35 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHH-----TSCCEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-----CCCeEEEEEcCc
Confidence            4689999999999999999999     999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.01  E-value=0.023  Score=46.68  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|+|+|..|...|..|.+     .|++|++++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~-----~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHR-----MGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----TTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            3579999999999999999999     999999999853

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.98  E-value=0.027  Score=53.12  Aligned_cols=34  Identities=18%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~-----~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAA-----TGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            3579999999999999999999     999999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.96  E-value=0.023  Score=56.98  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||.|.+|+++|..|++     .|++|++.|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~-----~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAK-----LGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHH-----TTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh-----CCCEEEEEeCCc
Confidence            35789999999999999999999     999999999865

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=94.94  E-value=0.061  Score=54.53  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=35.7

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      +..+..+||+|||||++|++||..|++..   .|.+|+|+|+++.++
T Consensus         6 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~~---~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            6 DKAPSHVPFLLIGGGTAAFAAARSIRARD---PGARVLIVSEDPELP   49 (493)
T ss_dssp             --CCSEEEEEEESCSHHHHHHHHHHHHHS---TTCEEEEEESSSSCC
T ss_pred             CCCCCcCCEEEECChHHHHHHHHHHHhcC---CCCeEEEEeCCCCCC
Confidence            34455689999999999999999998832   489999999987654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.76  E-value=0.03  Score=49.97  Aligned_cols=35  Identities=34%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~-----~g~~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVG-----SGFKVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            45789999999999999999999     999999999863

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=94.70  E-value=0.033  Score=55.79  Aligned_cols=36  Identities=28%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++|+.+++
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAA-----QGKNVTMIVRGERV  183 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCeEEEEEcCCcc
Confidence            3589999999999999999999     99999999998753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.67  E-value=0.03  Score=53.20  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ...++|+|||+|..|.+.|..|++     .|+  +|++++++.
T Consensus         5 ~~~mkI~IiGaG~vG~~~a~~l~~-----~g~~~~V~l~d~~~   42 (319)
T 1lld_A            5 VKPTKLAVIGAGAVGSTLAFAAAQ-----RGIAREIVLEDIAK   42 (319)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEeCCh
Confidence            345789999999999999999999     998  999999863

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=94.66  E-value=0.03  Score=52.29  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|..|.+.|..|++     .|++|++++++.
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~-----~G~~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAF-----HGFAVTAYDINT   37 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            3679999999999999999999     999999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.61  E-value=0.033  Score=52.57  Aligned_cols=36  Identities=19%  Similarity=0.025  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         5 ~~~~~I~iIG~G~mG~~~a~~l~~-----~G~~V~~~dr~~   40 (303)
T 3g0o_A            5 GTDFHVGIVGLGSMGMGAARSCLR-----AGLSTWGADLNP   40 (303)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence            345789999999999999999999     999999999864

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=94.59  E-value=0.029  Score=56.01  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=33.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+|+.+++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYE-----RGLHPTLIHRSDKI  182 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCEEEEEESSSCC
T ss_pred             CcEEEEECCccchhhhHHHHHh-----cCCcceeeeeeccc
Confidence            4589999999999999999999     99999999998775

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.55  E-value=0.028  Score=50.13  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||+|-.|...|..|.+     .|++|+++|++.
T Consensus         1 M~iiIiG~G~~G~~la~~L~~-----~g~~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLS-----RKYGVVIINKDR   33 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH-----TTCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            469999999999999999999     999999999864

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=94.53  E-value=0.04  Score=48.85  Aligned_cols=36  Identities=17%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|.|||+|..|.+.|..|++     .|++|++++++..
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~-----~g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEI-----AGHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEcCCHH
Confidence            35689999999999999999999     9999999998754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.51  E-value=0.033  Score=53.87  Aligned_cols=44  Identities=18%  Similarity=0.384  Sum_probs=36.4

Q ss_pred             hcC-CeEEeCCceEEEEEeCCEEEEEEccCceEe-cCEEEEccCCC
Q 043512          266 RSD-VALHLHEEIESISYLREYYELNSTKGNSYT-CQITVVATPLD  309 (487)
Q Consensus       266 ~~G-~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~-ad~VV~a~~~~  309 (487)
                      +.| ++++++++|++|..+++.+.|++.+|+.+. +|.||++++..
T Consensus       226 ~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~  271 (369)
T 3d1c_A          226 QGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFD  271 (369)
T ss_dssp             TTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBC
T ss_pred             hCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccC
Confidence            455 899999999999877777788888887665 59999998874

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.43  E-value=0.022  Score=53.50  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||+|..|.+.|..|++     .|++|+++.|+.
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~-----~g~~V~~~~r~~   35 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQ-----SLPHTTLIGRHA   35 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHH-----HCTTCEEEESSC
T ss_pred             CcEEEEECCCHHHHHHHHHHHH-----CCCeEEEEEecc
Confidence            4689999999999999999999     999999999863

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.41  E-value=0.026  Score=56.32  Aligned_cols=36  Identities=22%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .++|.|||.|.+|+++|..|++     +|++|+++|.+...
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~-----~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLA-----RGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHT-----TTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHh-----CCCEEEEEECCCCc
Confidence            4679999999999999999999     99999999987654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.41  E-value=0.049  Score=54.27  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|.|||+|..|.+.|..|++     +|++|+++|++..
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~-----aG~~V~l~D~~~e   88 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGL-----AGIETFLVVRNEQ   88 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEECcHH
Confidence            3679999999999999999999     9999999998754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=94.39  E-value=0.039  Score=51.91  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.++
T Consensus       143 ~~~v~VvG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          143 NKEVAVLGGGDTAVEEAIYLAN-----ICKKVYLIHRRDG  177 (311)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHT-----TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEeeCCc
Confidence            4689999999999999999999     9999999998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.34  E-value=0.039  Score=55.18  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|+..|..|++     .|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~-----~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAE-----LGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----cCCEEEEEECCH
Confidence            689999999999999999999     999999999864

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=94.31  E-value=0.043  Score=51.17  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~r~~   33 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCK-----QGHEVQGWLRVP   33 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSC
T ss_pred             CeEEEECcCHHHHHHHHHHHh-----CCCCEEEEEcCc
Confidence            369999999999999999999     999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.21  E-value=0.041  Score=51.72  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.++
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~  178 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAG-----IVEHVTLLEFAPE  178 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHT-----TBSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----hCCEEEEEEeCcc
Confidence            3679999999999999999999     9999999998765

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.20  E-value=0.049  Score=53.15  Aligned_cols=34  Identities=12%  Similarity=0.243  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|+.+|..|..     .|.+|+++|++.
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~-----lGa~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARR-----LGAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEcCCH
Confidence            4689999999999999999999     999999999875

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.20  E-value=0.043  Score=55.34  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+++|+|||+|..|+..|..|++     .|++|++++++.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~-----~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLAD-----IGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            46789999999999999999999     999999999853

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.20  E-value=0.049  Score=52.08  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||||-.|.+.|..|++     .|+ +|+++|.+.
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~-----~g~~~V~L~D~~~   43 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCAL-----RELADVVLYDVVK   43 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEECCh
Confidence            3689999999999999999999     898 999999864

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.15  E-value=0.045  Score=51.72  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQ-----GGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHh-----CCCcEEEEECCH
Confidence            589999999999999999999     999999999853

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.15  E-value=0.046  Score=52.37  Aligned_cols=35  Identities=20%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++++|.|||+|..|.+.|..|++     .|++|++++++
T Consensus        12 ~~~~kI~iIG~G~mG~ala~~L~~-----~G~~V~~~~r~   46 (335)
T 1z82_A           12 HMEMRFFVLGAGSWGTVFAQMLHE-----NGEEVILWARR   46 (335)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSS
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHh-----CCCeEEEEeCC
Confidence            356889999999999999999999     99999999885

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=94.10  E-value=0.051  Score=53.69  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++|+.+++-
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTK-----FGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----cCCeEEEEecCCchh
Confidence            5789999999999999999999     999999999988753

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.09  E-value=0.066  Score=50.53  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .....++|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~-----~G~~V~~~dr~~   42 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLK-----QGKRVAIWNRSP   42 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            34456789999999999999999999     999999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=94.08  E-value=0.05  Score=53.56  Aligned_cols=37  Identities=24%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++|+.+++.
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtvv~~~~~~~  178 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARA-----KGLEVDVVELAPRVM  178 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCEEEEEeCCCcch
Confidence            4679999999999999999999     999999999987653

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=94.07  E-value=0.04  Score=56.57  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||+|..|+-+|..|++     .|.+|+|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~-----~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAP-----EVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT-----TCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHh-----hCCEEEEEECCCC
Confidence            4689999999999999999999     9999999999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=94.02  E-value=0.051  Score=52.06  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|+|||+|..|.+.|..|++     .|++|+++++.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~-----~g~~V~~~~r~   35 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLAL-----AGEAINVLARG   35 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHH-----TTCCEEEECCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-----CCCEEEEEECh
Confidence            3689999999999999999999     99999999874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=93.96  E-value=0.054  Score=54.37  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCC-CC-eEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNW-HP-RILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~-~V~VlE~~~~   60 (487)
                      +.++|+|||+|..|+..|..|++     . |+ +|++++++..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~-----~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFAD-----APCFEKVLGFQRNSK   54 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHH-----STTCCEEEEECCCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-----hCCCCeEEEEECChh
Confidence            34689999999999999999999     9 99 9999998754

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.95  E-value=0.062  Score=50.86  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...++|.|||.|..|.+.|..|++     .|++|++++++..
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~-----~G~~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLK-----NGFKVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHH-----CCCeEEEEeCCHH
Confidence            345789999999999999999999     9999999998753

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=93.91  E-value=0.062  Score=48.91  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~-----~G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALAD-----LGHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCh
Confidence            45789999999999999999999     999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=93.89  E-value=0.051  Score=54.64  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .++|+|||+|.+|+-.|..|++     .|.+|+++++++.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~-----~g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYK-----YGAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHH-----TTCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHH-----hCCeEEEEEECCCC
Confidence            4689999999999999999999     99999999998664

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=93.88  E-value=0.069  Score=53.59  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|...|..|++     +|++|+++|++.
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~-----~G~~V~l~D~~~   70 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFAR-----VGISVVAVESDP   70 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TTCEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            4579999999999999999999     999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=93.84  E-value=0.049  Score=51.81  Aligned_cols=36  Identities=19%  Similarity=0.469  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.+.+
T Consensus       159 ~~~v~VvG~G~~g~e~A~~l~~-----~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          159 NKPLAVIGGGDSAMEEANFLTK-----YGSKVYIIHRRDAF  194 (333)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT-----TSSEEEEECSSSSC
T ss_pred             CCeEEEECCChHHHHHHHHHHh-----cCCeEEEEecCCcC
Confidence            4689999999999999999999     99999999998653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=93.82  E-value=0.044  Score=56.33  Aligned_cols=36  Identities=19%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||+|.+|+-+|..|++     .+.+|+|+++.++
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~-----~~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAE-----TAKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTT-----TBSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHh-----hCCEEEEEEcCCC
Confidence            35789999999999999999999     9999999999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=93.76  E-value=0.06  Score=51.99  Aligned_cols=34  Identities=21%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~-----~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLAR-----KGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHT-----TTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            4689999999999999999999     999999999863

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.74  E-value=0.061  Score=54.26  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=32.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+++++.++
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSA-----LGSKTSLMIRHDK  221 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHH-----cCCeEEEEEeCCc
Confidence            4689999999999999999999     9999999998764

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.73  E-value=0.069  Score=50.96  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +.++|+|||||..|.+.|..|++     .|+ +|+++|.+.
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~-----~g~~~V~L~Di~~   48 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQ-----KDLGDVYMFDIIE   48 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEECCH
Confidence            44689999999999999999999     998 999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.73  E-value=0.06  Score=51.13  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||+|..|.+.|..|++     .|++|+++ ++.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~-----~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLAR-----AGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHH-----TTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHH-----CCCeEEEE-EcH
Confidence            45789999999999999999999     99999999 653

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.72  E-value=0.066  Score=50.94  Aligned_cols=36  Identities=17%  Similarity=0.245  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...++|.|||.|..|...|..|++     .|++|++++++.
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~-----~G~~V~~~dr~~   64 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCE-----AGYALQVWNRTP   64 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             cCCCEEEEECccHHHHHHHHHHHh-----CCCeEEEEcCCH
Confidence            345689999999999999999999     999999999864

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=93.72  E-value=0.055  Score=51.61  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-.|..|++     .|.+|+++++.++
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~-----~g~~V~l~~~~~~  189 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTR-----FARSVTLVHRRDE  189 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT-----TCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----hCCeEEEEEcCCc
Confidence            4789999999999999999999     9999999998764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=93.67  E-value=0.057  Score=51.20  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.+.
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~-----~g~~Vtlv~~~~~  186 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTK-----FADEVTVIHRRDT  186 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTT-----TCSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCEEEEEeCCCc
Confidence            3679999999999999999999     9999999998764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=93.66  E-value=0.048  Score=56.10  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||+|..|+-+|..|++     .|.+|+|+++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~-----~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAE-----QAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----HBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHh-----hCCEEEEEECCCC
Confidence            5689999999999999999999     8999999999875

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.59  E-value=0.06  Score=48.09  Aligned_cols=35  Identities=14%  Similarity=0.091  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.|+|||||-.|...|..|.+     .|.+|+|++...
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~-----~GA~VtVvap~~   64 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQ-----EGAAITVVAPTV   64 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGG-----GCCCEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECCCC
Confidence            35789999999999999999999     999999998753

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.58  E-value=0.058  Score=52.16  Aligned_cols=35  Identities=9%  Similarity=0.244  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|+.+|..|..     .|.+|++++++.
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~-----lGa~V~v~D~~~  217 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKR-----LGAKTTGYDVRP  217 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHH-----HTCEEEEECSSG
T ss_pred             CCCEEEEECchHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            35689999999999999999999     899999999864

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=93.56  E-value=0.078  Score=50.57  Aligned_cols=34  Identities=18%  Similarity=0.042  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHH-HHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSS-LAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLs-aA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||.|-+|++ +|..|++     +|++|++.|++.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~-----~G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKE-----AGFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHH-----TTCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHh-----CCCEEEEEcCCC
Confidence            468999999999997 7888889     999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.53  E-value=0.075  Score=50.88  Aligned_cols=39  Identities=28%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+..++|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         3 ~~~~~~~kIgIIG~G~mG~slA~~L~~-----~G~~V~~~dr~~   41 (341)
T 3ktd_A            3 TTKDISRPVCILGLGLIGGSLLRDLHA-----ANHSVFGYNRSR   41 (341)
T ss_dssp             ---CCSSCEEEECCSHHHHHHHHHHHH-----TTCCEEEECSCH
T ss_pred             CccCCCCEEEEEeecHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            334456789999999999999999999     999999999874

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.47  E-value=0.046  Score=50.44  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+.|+|||||-.|+..|..|.+     .|.+|+|++..
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~-----~Ga~VtViap~   45 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMP-----TGCKLTLVSPD   45 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG-----GTCEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHh-----CCCEEEEEcCC
Confidence            35789999999999999999999     99999999875

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.44  E-value=0.076  Score=49.55  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~-----~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVK-----AGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHH-----CCCeEEEEcCCHH
Confidence            579999999999999999999     9999999998753

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=93.35  E-value=0.075  Score=50.45  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||+|..|.+.|..|++     .|+ +|++++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~-----~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGK-----DNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCceEEEEeCCc
Confidence            4689999999999999999999     898 999999864

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.35  E-value=0.082  Score=52.64  Aligned_cols=36  Identities=11%  Similarity=0.304  Sum_probs=32.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+.+++|||.|..|+..|..|++     .|++|++++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~-----~G~~V~~~D~~~~   42 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSD-----FGHEVVCVDKDAR   42 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCST
T ss_pred             CceEEEEEcCCHHHHHHHHHHHH-----CCCEEEEEeCCHH
Confidence            35689999999999999999999     9999999998753

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=93.35  E-value=0.13  Score=52.21  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=33.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      .+||+|||||++|+++|+.|++     +|++|+|+||++..+
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~-----~G~~V~llE~~~~~~   39 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAG-----RGLSVLMLEAQDLAC   39 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSTTC
T ss_pred             cCCEEEECcCHHHHHHHHHHHh-----CCCCEEEEECCCCCC
Confidence            5799999999999999999999     999999999987443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.28  E-value=0.06  Score=51.22  Aligned_cols=35  Identities=26%  Similarity=0.243  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.++
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~-----~g~~V~~v~~~~~  186 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLD-----TARRITLIHRRPQ  186 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTT-----TSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----hCCEEEEEEcCCc
Confidence            4689999999999999999999     9999999998754

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.27  E-value=0.037  Score=49.69  Aligned_cols=35  Identities=14%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++.++|.|||+|..|.+.|..|++     +|++|+++++.
T Consensus         4 ~~~mkI~IIG~G~~G~sLA~~L~~-----~G~~V~~~~~~   38 (232)
T 3dfu_A            4 APRLRVGIFDDGSSTVNMAEKLDS-----VGHYVTVLHAP   38 (232)
T ss_dssp             CCCCEEEEECCSCCCSCHHHHHHH-----TTCEEEECSSG
T ss_pred             CCCcEEEEEeeCHHHHHHHHHHHH-----CCCEEEEecCH
Confidence            345689999999999999999999     99999999874

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=93.20  E-value=0.064  Score=50.37  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|.|||.|..|...|..|++     .|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~-----~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTE-----WPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTT-----STTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCCHH
Confidence            4689999999999999999999     9999999998753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.15  E-value=0.071  Score=53.26  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~~   60 (487)
                      .++|+|||+|.+|+=.|..|++     .|.+ |+++++.+.
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~-----~~~~~V~l~~r~~~  247 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTP-----VAKHPIYQSLLGGG  247 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTT-----TSCSSEEEECTTCC
T ss_pred             CCEEEEEccCcCHHHHHHHHHH-----HhCCcEEEEeCCCC
Confidence            4689999999999999999999     8999 999999764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.14  E-value=0.077  Score=51.24  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ...+|+|+|||.+|+.+|..|..     .|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~-----~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLA-----AGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH-----HTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHH-----cCCCeEEEEECCC
Confidence            45689999999999999999999     898 999999973

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=93.14  E-value=0.087  Score=50.79  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++|+|||+|..|...|..|++     .|++|++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~-----~g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLAL-----KGQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----CCCEEEEEeCC
Confidence            689999999999999999999     99999999885

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.10  E-value=0.039  Score=45.58  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|.+.|..|++     .|.+|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~-----~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSY-----PQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCT-----TTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEcCCH
Confidence            5789999999999999999999     999999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.06  E-value=0.084  Score=50.11  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      +.++|.|||+|..|.+.|..|++     .| ++|++++++.
T Consensus        23 M~m~IgvIG~G~mG~~lA~~L~~-----~G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIGFGEAAQSIAGGLGG-----RNAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-----TTCSEEEEECGGG
T ss_pred             cCCeEEEECccHHHHHHHHHHHH-----cCCCeEEEEeCCC
Confidence            45789999999999999999999     99 9999999874

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=93.04  E-value=0.072  Score=50.35  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|+|||+|..|+-.|..|++     .|.+|+++++.++
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~-----~g~~V~~i~~~~~  189 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSE-----YVKNVTIIEYMPK  189 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-----TBSEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----hCCcEEEEEcCCc
Confidence            579999999999999999999     9999999998754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=93.02  E-value=0.092  Score=52.88  Aligned_cols=34  Identities=26%  Similarity=0.489  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     +|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~-----aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAAS-----HGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-----TTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-----CCCeEEEEECCH
Confidence            3579999999999999999999     999999999865

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.01  E-value=0.092  Score=49.49  Aligned_cols=33  Identities=24%  Similarity=0.418  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ++|+|||||..|.+.|..|+.     .|+  +|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~-----~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVL-----RGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEeCCH
Confidence            479999999999999999999     998  999999863

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.93  E-value=0.085  Score=52.53  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||+|..|+..|..|++     .|++|++++++.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~-----~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSA-----RGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            369999999999999999999     999999999853

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.83  E-value=0.092  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.453  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ...+|+|+|||.+|..+|..|..     .|. +|+|++++
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~-----~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLD-----LGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----HTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEECC
Confidence            45789999999999999999999     887 89999997

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.82  E-value=0.047  Score=54.79  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|+|+|-.|.+.|..|.+     .|++|+|+|++.
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~-----~~~~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVG-----ENNDITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCS-----TTEEEEEEESCH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCH
Confidence            45789999999999999999999     999999999974

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=92.76  E-value=0.062  Score=50.85  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC-----C-CeEEEEec
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW-----H-PRILMFER   57 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~-----G-~~V~VlE~   57 (487)
                      ++|.|||+|..|.+.|..|++     .     | ++|+++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~-----~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLAL-----RAAATDGLLEVSWIAR   45 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-----HHHHTTSSEEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----CccccCCCCCEEEEEc
Confidence            589999999999999999999     8     9 99999987

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.68  E-value=0.083  Score=49.28  Aligned_cols=34  Identities=26%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|.|||.|..|.+.|..|++     .|++|++++++..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~-----~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVR-----AGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH-----HTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHH-----CCCeEEEEcCCHH
Confidence            479999999999999999999     9999999998753

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.68  E-value=0.13  Score=48.85  Aligned_cols=34  Identities=21%  Similarity=0.464  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||||-.|.+.|..|+.     .|+ +|+++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~-----~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQ-----KNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEeCCH
Confidence            4689999999999999999999     898 999999754

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=92.66  E-value=0.047  Score=53.79  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=33.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~~~GG   63 (487)
                      .+||+|||||++|+++|+.|++     +  |++|+|+|+++..+|
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~-----~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQ-----LAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----HCTTSCEEEECSSCSSCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHh-----cCCCCeEEEEeCCCCCCc
Confidence            3799999999999999999999     8  999999999865443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=92.63  E-value=0.086  Score=50.29  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=29.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ++|.|||+|..|.+.|..|++     .|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~-----~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVD-----NGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH-----HCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----CCCeEEEEEc
Confidence            369999999999999999999     9999999998

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=92.60  E-value=0.12  Score=48.96  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|..|++..   .|++|+++|++.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~---~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQ---LARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT---CCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC---CCCEEEEEeCCh
Confidence            37999999999999999999821   278999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=92.60  E-value=0.1  Score=54.24  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+|+|||||..|+-+|..|++     .|.+|+|+|+.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~-----~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLAS-----LGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCEEEEEECC
Confidence            3579999999999999999999     99999999975

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.56  E-value=0.12  Score=51.17  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=32.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+.+|+|||.|..||.+|..|++     .|++|+.+|-+.
T Consensus        18 ~~~m~~IaViGlGYVGLp~A~~~A~-----~G~~V~g~Did~   54 (444)
T 3vtf_A           18 GSHMASLSVLGLGYVGVVHAVGFAL-----LGHRVVGYDVNP   54 (444)
T ss_dssp             TCCCCEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSCH
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHh-----CCCcEEEEECCH
Confidence            3456789999999999999999999     999999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.55  E-value=0.1  Score=52.48  Aligned_cols=36  Identities=19%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-+|..|++     . |.+|+++|+.+++
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~-----~~g~~Vtlv~~~~~~  195 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLAD-----MWGIDTTVVELADQI  195 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----HHCCEEEEECSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----hcCCcEEEEEccCcc
Confidence            4689999999999999999999     8 9999999998764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.55  E-value=0.12  Score=50.64  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|+.+|..|+.     .|.+|++++++.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~-----~Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANS-----LGAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEcCCH
Confidence            5689999999999999999999     999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.54  E-value=0.14  Score=48.46  Aligned_cols=35  Identities=31%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      +.++|.|||+|..|.+.|..|++     .|+  +|++++++.
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~-----~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRR-----SGFKGKIYGYDINP   68 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHH-----TTCCSEEEEECSCH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh-----CCCCCEEEEEECCH
Confidence            34789999999999999999999     999  999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=92.53  E-value=0.087  Score=53.81  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++|+.++
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~-----~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAG-----IVEHVTLLEFAPE  389 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHH-----HBSEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----hCCEEEEEEeCcc
Confidence            4689999999999999999999     8999999998765

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.44  E-value=0.077  Score=51.47  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=30.0

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~-----~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSK-----KCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-----TEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            89999999999999999999     999999998753

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=92.43  E-value=0.14  Score=48.17  Aligned_cols=35  Identities=26%  Similarity=0.399  Sum_probs=31.7

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.++|.||| +|..|.+.|..|++     .|++|++++++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~-----~G~~V~~~~~~~   55 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRA-----SGYPISILDRED   55 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHT-----TTCCEEEECTTC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHh-----CCCeEEEEECCc
Confidence            345899999 99999999999999     999999999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.42  E-value=0.1  Score=48.92  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++.+|.+||-|..|...|..|.+     +|++|++++++.
T Consensus         3 ~Ms~kIgfIGLG~MG~~mA~~L~~-----~G~~V~v~dr~~   38 (297)
T 4gbj_A            3 AMSEKIAFLGLGNLGTPIAEILLE-----AGYELVVWNRTA   38 (297)
T ss_dssp             -CCCEEEEECCSTTHHHHHHHHHH-----TTCEEEEC----
T ss_pred             CCCCcEEEEecHHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            345689999999999999999999     999999999864

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=92.37  E-value=0.13  Score=49.59  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||.|..|...|..|++     .|++|++++++.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~-----~G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRK-----GGHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHh-----CCCEEEEEeCCH
Confidence            4689999999999999999999     999999999864

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.34  E-value=0.14  Score=48.37  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||||-.|.+.|+.|+.     .|+ +|+++|.+.
T Consensus         2 ~~kI~VIGaG~vG~~~a~~la~-----~g~~~v~L~Di~~   36 (309)
T 1ur5_A            2 RKKISIIGAGFVGSTTAHWLAA-----KELGDIVLLDIVE   36 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCCeEEEEeCCc
Confidence            3689999999999999999999     886 999999753

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=92.33  E-value=0.15  Score=51.14  Aligned_cols=36  Identities=11%  Similarity=0.087  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~   60 (487)
                      ..++|+|||||..|+-+|..+.+     .|. +|++++++++
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r-----~Ga~~Vtiv~r~~~  299 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIR-----QGATSVKCLYRRDR  299 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHH-----TTCSEEEEECSSCS
T ss_pred             CCCEEEEECCChhHHHHHHHHHH-----cCCCEEEEEEeCCc
Confidence            45789999999999999999999     887 5999998764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=92.30  E-value=0.14  Score=49.93  Aligned_cols=35  Identities=11%  Similarity=0.236  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|+.+|..++.     .|.+|++++++.
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~-----~Ga~V~~~d~~~  205 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKR-----LGAVVMATDVRA  205 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            35789999999999999999999     999999999864

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.24  E-value=0.14  Score=50.55  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=31.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||.|-.|...|..|.+     .|++|+|+|++.
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~-----~g~~vvvId~d~   37 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLS-----SGVKMVVLDHDP   37 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEECCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----CCCCEEEEECCH
Confidence            34679999999999999999999     999999999874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=92.22  E-value=0.16  Score=47.33  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+ |..|.+.|..|++     .|++|++++++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~-----~g~~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHD-----SAHHLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-----SSSEEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            468999999 9999999999999     999999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=92.22  E-value=0.14  Score=45.18  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=30.0

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+||| +|..|.+.|..|++     .|++|++++++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~-----~g~~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLAT-----LGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-----TTCEEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            3699999 99999999999999     999999998863

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=92.22  E-value=0.11  Score=49.28  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..++|.|||.|..|.+.|..|++     .|+ +|++++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~-----~G~~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQ-----AGAIDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHH-----HSCCEEEEECSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHH-----CCCCeEEEEcCC
Confidence            35689999999999999999999     999 99999986

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.21  E-value=0.15  Score=51.56  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+++++.
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~-----~g~~Vtlv~~~  217 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTG-----IGLDTTVMMRS  217 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-----cCCceEEEEcC
Confidence            4579999999999999999999     99999999975

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=92.17  E-value=0.13  Score=48.15  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|.|||+|..|...|..|++     .|++|++++++.
T Consensus         5 ~m~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~~~~   38 (299)
T 1vpd_A            5 TMKVGFIGLGIMGKPMSKNLLK-----AGYSLVVSDRNP   38 (299)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             cceEEEECchHHHHHHHHHHHh-----CCCEEEEEeCCH
Confidence            3689999999999999999999     999999998864

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.14  E-value=0.083  Score=47.18  Aligned_cols=34  Identities=29%  Similarity=0.308  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEE-EecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILM-FERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~V-lE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++ ++++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~-----~g~~V~~v~~r~~   57 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTA-----AQIPAIIANSRGP   57 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHH-----TTCCEEEECTTCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEECCCH
Confidence            4689999999999999999999     9999999 88764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=92.08  E-value=0.16  Score=51.88  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+|+|||||..|+-.|..|++     .|.+|+|+++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~-----~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAG-----IGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHH-----cCCeEEEEecc
Confidence            3579999999999999999999     99999999974

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.04  E-value=0.19  Score=47.65  Aligned_cols=35  Identities=9%  Similarity=0.041  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ...+|+|||+|..|.+.|+.|+.     .|.  +|+++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~-----~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLM-----KDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHH-----HCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCCCeEEEEECCH
Confidence            45789999999999999999999     887  899999753

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.03  E-value=0.15  Score=48.21  Aligned_cols=33  Identities=24%  Similarity=0.450  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      .++|+|||+|..|.+.|+.|++     .|+ +|+++|.+
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~-----~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQ-----KELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEecc
Confidence            4689999999999999999999     999 99999986

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.02  E-value=0.28  Score=45.80  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=37.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEE-EecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILM-FERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~V-lE~~~~~GGr~~   66 (487)
                      .++||+|||||++|++||+.|++     .|++|+| +|+ +.+||.+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~-----~g~~v~li~e~-~~~gG~~~   44 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR-----GGLKNVVMFEK-GMPGGQIT   44 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-----HTCSCEEEECS-SSTTGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-----CCCCeEEEEeC-CCCCceee
Confidence            46799999999999999999999     9999999 999 67888754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.00  E-value=0.17  Score=49.01  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+|+|+|..|+.+|..|+.     .|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~-----~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVG-----LGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCEEEEEeCCH
Confidence            789999999999999999999     999999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.93  E-value=0.17  Score=46.73  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .+.|+|+|+|-.|.++|..|++     .|.+|+|+.|+
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~-----~G~~V~v~~R~  151 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLS-----LDCAVTITNRT  151 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-----cCCEEEEEECC
Confidence            4689999999999999999999     99999999876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.88  E-value=0.16  Score=53.90  Aligned_cols=34  Identities=32%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|...|..|++     +|++|+++|++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~-----aG~~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALIL-----SNYPVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHT-----TTCCEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHh-----CCCEEEEEECCH
Confidence            3579999999999999999999     999999999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.88  E-value=0.17  Score=45.98  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC----eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP----RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~----~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|.+     .|+    +|++++++.
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~-----~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMIN-----KNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-----TTSSCGGGEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHh-----CCCCCCCeEEEEeCCH
Confidence            3679999999999999999999     998    999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.87  E-value=0.16  Score=51.26  Aligned_cols=36  Identities=17%  Similarity=0.420  Sum_probs=33.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-.|..|++     .|.+|+++|+.+++
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~-----~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHG-----LGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-----cCCeEEEEECCCcc
Confidence            4689999999999999999999     99999999998764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=91.87  E-value=0.16  Score=51.36  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=32.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+..+|.|||+|..|.+.|..|++     +|++|++++++.
T Consensus         8 ~~~~~IgvIGlG~MG~~lA~~La~-----~G~~V~v~dr~~   43 (497)
T 2p4q_A            8 HMSADFGLIGLAVMGQNLILNAAD-----HGFTVCAYNRTQ   43 (497)
T ss_dssp             -CCCSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSS
T ss_pred             cCCCCEEEEeeHHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            356789999999999999999999     999999999864

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.85  E-value=0.15  Score=50.36  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .....++|+|||+|..|++.|..|++      |++|++++++.
T Consensus        32 r~~~~mkIaVIGlG~mG~~lA~~La~------G~~V~~~D~~~   68 (432)
T 3pid_A           32 RGSEFMKITISGTGYVGLSNGVLIAQ------NHEVVALDIVQ   68 (432)
T ss_dssp             ---CCCEEEEECCSHHHHHHHHHHHT------TSEEEEECSCH
T ss_pred             cccCCCEEEEECcCHHHHHHHHHHHc------CCeEEEEecCH
Confidence            34445689999999999999998874      89999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=91.84  E-value=0.12  Score=52.09  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~   58 (487)
                      .++|.|||+|..|+..|..|++     .  |++|++++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~-----~g~g~~V~~~D~~   43 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAH-----KCPHITVTVVDMN   43 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHH-----HCTTSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEECC
Confidence            4689999999999999999999     7  7999999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.82  E-value=0.17  Score=46.93  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRR-----RGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            369999999999999999999     999999998863

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.78  E-value=0.28  Score=49.66  Aligned_cols=40  Identities=35%  Similarity=0.497  Sum_probs=36.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+||+|||||++|++||+.|++     . ++|+|+|+++.+||...
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~-----~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQ-----Y-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTT-----T-CCEEEECTTSSSSCSGG
T ss_pred             cCCEEEECccHHHHHHHHHHHh-----c-CCEEEEeCCCCCCCeee
Confidence            3589999999999999999999     9 99999999999998754

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=91.76  E-value=0.16  Score=50.87  Aligned_cols=36  Identities=25%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHH--------------------HhcCCCCCC-eEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLR--------------------QYSSKNWHP-RILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~--------------------~~~~~~~G~-~V~VlE~~~~   60 (487)
                      ...+|+|||+|..|+-+|..|+                    +     .|. +|+|+++++.
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~-----~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ-----SRVKTVWIVGRRGP  200 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHT-----CCCCEEEEECSSCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhh-----CCCcEEEEEEcCCh
Confidence            3578999999999999999999                    5     677 7999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=91.73  E-value=0.21  Score=47.26  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~-----~g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLK-----MGHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHh-----CCCEEEEEeCCH
Confidence            4689999999999999999999     999999999864

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.72  E-value=0.14  Score=51.46  Aligned_cols=34  Identities=21%  Similarity=0.425  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|+..|..|++     .  |++|++++++.
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~-----~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAH-----MCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHH-----HCTTSEEEEECSCH
T ss_pred             ccEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEECCH
Confidence            3689999999999999999999     7  89999998853

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=91.66  E-value=0.14  Score=46.95  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=30.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .| ++|++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~-----~g~~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVK-----QGGYRIYIANRGA   34 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HCSCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHH-----CCCCeEEEECCCH
Confidence            369999999999999999999     99 9999999863

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.61  E-value=0.14  Score=48.66  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      ++|+|||+|..|.+.|..|++     .|+  +|++++++
T Consensus         1 mkI~VIGaG~~G~~la~~l~~-----~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLM-----KGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCCeEEEEeCC
Confidence            369999999999999999999     898  99999986

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=91.61  E-value=0.11  Score=50.58  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-------CeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-------PRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-------~~V~VlE~~~~   60 (487)
                      .++|.|||+|..|.+.|..|++     .|       ++|++++++..
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~-----~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGT-----NAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHH-----HHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHH-----cCCccCCCCCeEEEEECChh
Confidence            3579999999999999999999     89       99999998653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.59  E-value=0.19  Score=48.68  Aligned_cols=34  Identities=21%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...|+|+|+|..|+.+|..|+.     .|.+|++++++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~-----~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALG-----MGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            4789999999999999999999     999999999864

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=91.52  E-value=0.097  Score=51.52  Aligned_cols=30  Identities=20%  Similarity=0.429  Sum_probs=28.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCC-CCeEEEEe
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNW-HPRILMFE   56 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~-G~~V~VlE   56 (487)
                      ++|+|||+|..|.+.|..|++     . |++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~-----~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAAS-----RDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTT-----STTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHh-----CCCCEEEEEe
Confidence            579999999999999999987     6 99999998

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=91.52  E-value=0.17  Score=50.75  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||.|..|.+.|..|++     .|++|++++++.
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~-----~G~~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMND-----HGFVVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSST
T ss_pred             CCCEEEEEChhHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            34689999999999999999999     999999999875

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=91.44  E-value=0.15  Score=47.18  Aligned_cols=35  Identities=26%  Similarity=0.194  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++++|+|+|||..|...+..|.+     +|++|+++.|+.
T Consensus         4 m~~~ilVtGaG~iG~~l~~~L~~-----~g~~V~~~~r~~   38 (286)
T 3ius_A            4 MTGTLLSFGHGYTARVLSRALAP-----QGWRIIGTSRNP   38 (286)
T ss_dssp             -CCEEEEETCCHHHHHHHHHHGG-----GTCEEEEEESCG
T ss_pred             CcCcEEEECCcHHHHHHHHHHHH-----CCCEEEEEEcCh
Confidence            45789999999999999999999     999999998864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=91.37  E-value=0.18  Score=47.09  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~-----~g~~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMK-----HGYPLIIYDVFP   33 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHH-----TTCCEEEECSST
T ss_pred             CeEEEEeccHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            369999999999999999999     999999998864

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=91.36  E-value=0.23  Score=45.72  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|-+|-++|+.|++     .|.+|+|+.|+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~-----~G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKK-----QGLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            6789999999999999999999     999999998864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=91.35  E-value=0.22  Score=47.22  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||||..|.+.|+.|+.     .|+ +|+++|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~-----~~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGL-----KELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCeEEEEeCCc
Confidence            4589999999999999999999     888 999999864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=91.33  E-value=0.16  Score=51.21  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|.|||+|..|.+.|..|++     +|++|++++++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~-----~G~~V~v~~r~~   48 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIES-----RGYTVSIFNRSR   48 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHT-----TTCCEEEECSSH
T ss_pred             CCeEEEEccHHHHHHHHHHHHh-----CCCeEEEEeCCH
Confidence            4689999999999999999999     999999999863

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.27  E-value=0.16  Score=47.91  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ++|+|||+|-.|.+.|..|++     .|  .+|++++++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~-----~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA-----QGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEcCCH
Confidence            579999999999999999999     88  7999999863

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=91.24  E-value=0.19  Score=47.79  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC----CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH----PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G----~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|    ++|++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~-----~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTA-----AGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHH-----TTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCCCcceEEEECCCc
Confidence            4579999999999999999999     99    8999999865

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=91.23  E-value=0.2  Score=46.91  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|...|..|++     .|++|++++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLK-----EGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHH-----TTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            4689999999999999999999     999999998853

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.23  E-value=0.22  Score=46.15  Aligned_cols=33  Identities=33%  Similarity=0.434  Sum_probs=29.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|+  +|++++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~-----~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRR-----SGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH-----TTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHh-----cCCCcEEEEEeCCH
Confidence            479999999999999999999     998  999998753

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.15  E-value=0.23  Score=48.31  Aligned_cols=35  Identities=20%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|..|+.+|..++.     .|.+|++++++.
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~-----~Ga~V~~~d~~~  201 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANG-----MGATVTVLDINI  201 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEeCCH
Confidence            35789999999999999999999     999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=91.08  E-value=0.15  Score=46.95  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=30.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPR-ILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~-V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++ |.+++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~-----~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYR-----KGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH-----CCCeEEEEEeCCH
Confidence            4689999999999999999999     8998 89998864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.04  E-value=0.17  Score=47.72  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+++++.++
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~-----~~~~v~~~~~~~~  188 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEP-----IAKEVSIIHRRDK  188 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTT-----TBSEEEEECSSSS
T ss_pred             CCEEEEECCCHhHHHHHHHHHh-----hCCeEEEEEecCc
Confidence            4679999999999999999999     9999999998754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.04  E-value=0.2  Score=47.20  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||+|..|.+.|..|++      |++|+++.++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~~------g~~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLSL------YHDVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT------TSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHhc------CCceEEEECCH
Confidence            4789999999999999999983      78999998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.02  E-value=0.25  Score=47.00  Aligned_cols=36  Identities=11%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .....+|+|||+|..|.+.|+.|+.     +|.  +|+++|.+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~-----~~~~~el~L~Di~   53 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILM-----KDLADELALVDVI   53 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHh-----CCCCceEEEEeCC
Confidence            4456789999999999999999999     887  89999975

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=90.97  E-value=0.18  Score=46.61  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+|-+|.++|..|++     .|.+|+|+.|+
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~-----~G~~v~v~~R~  151 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQ-----AQQNIVLANRT  151 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHH-----TTCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCEEEEEECC
Confidence            35689999999999999999999     99999999886

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=90.96  E-value=0.19  Score=47.22  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ..+|+|||||..|.+.|+.|+.     +|+  +|.++|.+.
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~-----~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISA-----KGIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEcCCc
Confidence            4689999999999999999999     888  999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.95  E-value=0.23  Score=46.58  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..++|+|||+|-+|.++|..|++     .|. +|+|+.|+
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~-----~G~~~V~v~nR~  174 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLS-----TAAERIDMANRT  174 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT-----TTCSEEEEECSS
T ss_pred             CCCEEEEECcHHHHHHHHHHHHH-----CCCCEEEEEeCC
Confidence            35689999999999999999999     997 99999886

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.92  E-value=0.18  Score=47.13  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|+.|++     .|+  +|+++|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~-----~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLL-----NLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCCeEEEEECCh
Confidence            479999999999999999999     887  999999853

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=90.83  E-value=0.19  Score=53.20  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|...|..|++     +|++|+++|++.
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~-----aG~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSAS-----KGTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHh-----CCCEEEEEECCH
Confidence            4579999999999999999999     999999999864

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.79  E-value=0.26  Score=46.69  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .++|+|||+|-.|.+.|+.|+.     .|.  +|.++|.+
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~-----~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMAL-----RQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-----TTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEeCC
Confidence            4689999999999999999999     887  99999975

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=90.79  E-value=0.12  Score=49.67  Aligned_cols=34  Identities=35%  Similarity=0.553  Sum_probs=31.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC-------CeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-------PRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-------~~V~VlE~~~~   60 (487)
                      ++|.|||+|..|.+.|..|++     .|       ++|++++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~-----~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGG-----NAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-----HHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----cCCcccCCCCeEEEEEcChh
Confidence            579999999999999999999     88       89999998654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.69  E-value=0.18  Score=46.72  Aligned_cols=33  Identities=15%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||+|..|+-+|..|++     .| +|+++++.+
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~-----~g-~v~~v~~~~  173 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPD-----WG-ETTFFTNGI  173 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGG-----TS-EEEEECTTT
T ss_pred             CCEEEEEecCccHHHHHHHhhh-----cC-cEEEEECCC
Confidence            4689999999999999999999     89 999998764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.65  E-value=0.27  Score=47.46  Aligned_cols=34  Identities=18%  Similarity=0.451  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||||..|..+|+.+++     .|++|++++.+.
T Consensus         1 MK~I~ilGgg~~g~~~~~~Ak~-----~G~~vv~vd~~~   34 (363)
T 4ffl_A            1 MKTICLVGGKLQGFEAAYLSKK-----AGMKVVLVDKNP   34 (363)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCC
Confidence            3679999999999999999999     999999999864

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=90.60  E-value=0.21  Score=45.68  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|.|||+|..|.+.|..|++     .|++|.+++++.
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~-----~g~~v~~~~~~~   36 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQ-----TPHELIISGSSL   36 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-----SSCEEEEECSSH
T ss_pred             ccEEEEECCCHHHHHHHHHHHh-----CCCeEEEECCCH
Confidence            3689999999999999999999     999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=90.57  E-value=0.39  Score=44.98  Aligned_cols=53  Identities=9%  Similarity=0.102  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEcc---Cc--eEecCEEEEccCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTK---GN--SYTCQITVVATPLD  309 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~---G~--~~~ad~VV~a~~~~  309 (487)
                      ..+.+.+.+..|++++++++|++|..+++...|++.+   |+  ++.+|.||++++..
T Consensus       193 ~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~  250 (323)
T 3f8d_A          193 PIYVETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFD  250 (323)
T ss_dssp             HHHHHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCC
Confidence            4566666666699999999999998775555666655   75  79999999998863

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=90.57  E-value=0.21  Score=45.43  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .|. +|+|+++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~-----~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLAS-----AGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-----HTCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHH-----cCCCeEEEEcCC
Confidence            3689999999999999999999     897 89999985

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=90.54  E-value=0.2  Score=45.86  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC----CeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH----PRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G----~~V~VlE~~~~   60 (487)
                      ++|.|||+|..|.+.|..|++     .|    ++|++++++..
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~-----~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIAN-----ANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-----HTSSCGGGEEEECSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHH-----CCCCCCCeEEEEeCCcc
Confidence            579999999999999999999     88    79999998654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.53  E-value=0.29  Score=46.33  Aligned_cols=34  Identities=21%  Similarity=0.411  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      .++|+|||+|..|.+.|+.|+.     .|. +|.++|...
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~-----~~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALI-----KQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCceEEEEeCCh
Confidence            3689999999999999999999     887 999999864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=90.50  E-value=0.23  Score=50.05  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~-----~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMND-----HGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHH-----CCCeEEEEeCCH
Confidence            579999999999999999999     999999999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=90.49  E-value=0.22  Score=50.07  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~-----~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAE-----KGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            479999999999999999999     999999999853

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=90.40  E-value=0.26  Score=46.35  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCCcEEEECCC-hhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSG-IGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaG-iaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+| +.|..+|..|.+     .|.+|+|++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~-----~gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLAN-----DGATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHT-----TSCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHH-----CCCEEEEEeCc
Confidence            46789999999 679999999999     99999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.40  E-value=0.26  Score=46.78  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .++|+|||+|..|.+.|+.|+.     .|.  +|+++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~-----~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALIN-----QGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCceEEEEecc
Confidence            4689999999999999999999     776  89999975

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.40  E-value=0.29  Score=45.42  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=31.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC---eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP---RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~---~V~VlE~~~   59 (487)
                      .++|.|||+|-.|.+.|..|.+     .|+   +|++++++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~-----~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIA-----NGYDPNRICVTNRSL   39 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHH-----TTCCGGGEEEECSSS
T ss_pred             CCEEEEEcccHHHHHHHHHHHH-----CCCCCCeEEEEeCCH
Confidence            3679999999999999999999     998   999999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.37  E-value=0.3  Score=45.84  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|-.|..+|..|+.     .|.+|++++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~-----~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAA-----LGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            45789999999999999999999     999999999864

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.36  E-value=0.32  Score=51.53  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -.+|.|||||..|...|+.++.     .|++|+++|.+.
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~-----aG~~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFAR-----VGISVVAVESDP  349 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TTCEEEEECSSH
T ss_pred             ccEEEEEcccHHHHHHHHHHHh-----CCCchhcccchH
Confidence            4689999999999999999999     999999999864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=90.26  E-value=0.26  Score=52.56  Aligned_cols=34  Identities=18%  Similarity=0.084  Sum_probs=31.6

Q ss_pred             CCcEEEEC--CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIG--SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIG--aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||  ||..|+-+|..|++     .|.+|+|+|+.+
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~-----~G~~Vtlv~~~~  563 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLAT-----AGHEVTIVSGVH  563 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHH-----TTCEEEEEESSC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHH-----cCCEEEEEeccc
Confidence            46899999  99999999999999     999999999875

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=90.24  E-value=0.19  Score=46.89  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|...|..|++     .|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~-----~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLAR-----AGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHH-----TTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHh-----CCCEEEEEc-CH
Confidence            589999999999999999999     999999998 53

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.20  E-value=0.32  Score=45.44  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|-.|..+|..|+.     .|.+|++++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~-----~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAA-----LGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHh-----CCCEEEEEECCH
Confidence            45789999999999999999999     999999999864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=90.20  E-value=0.24  Score=45.31  Aligned_cols=30  Identities=27%  Similarity=0.217  Sum_probs=28.3

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      +|.|||+|..|.+.|..|++     .|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~-----~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRS-----RGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-----TTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHH-----CCCeEEEeCC
Confidence            69999999999999999999     9999999876

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.08  E-value=0.25  Score=46.67  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ++|+|||+|..|.+.|+.|++     .|.  +|+++|...
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~-----~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVAR-----QDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEeCch
Confidence            479999999999999999999     776  999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=90.05  E-value=0.26  Score=49.25  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=31.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|+|||+|-.|...|..|.+     .|.+|+|++..
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~-----~ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLE-----AGARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CcCEEEEEcCC
Confidence            4789999999999999999999     99999999975

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.04  E-value=0.36  Score=44.60  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|+|+|..|...+..|.+     +|++|+++.++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~-----~g~~V~~~~r~~   36 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTA-----QGHEVTGLRRSA   36 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-----TTCCEEEEECTT
T ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence            3679999999999999999999     999999998864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=90.03  E-value=0.31  Score=46.63  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~-----~G~~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKD-----SGVDVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHH-----TTCCEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHH-----CcCEEEEEECCh
Confidence            3579999999999999999999     999999999865

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=89.96  E-value=0.21  Score=48.34  Aligned_cols=40  Identities=35%  Similarity=0.516  Sum_probs=34.5

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCC---eEEEEecCC-Cccce
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHP---RILMFERNG-VVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~---~V~VlE~~~-~~GGr   64 (487)
                      ...+|+|||| |.+|+.|+..+..     -|.   +|+++|.+. .-||+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~-----lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHK-----VGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHH-----TTCCGGGEEEECHHHHTTCSC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHh-----CCCCcCceEEeeccccccCCc
Confidence            4678999999 9999999999999     897   999999865 34665

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=89.89  E-value=0.25  Score=45.74  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|||+|-.|.+.|..|.+     .|.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~-----~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVK-----EGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHH-----cCCEEEEEECCH
Confidence            4689999999999999999999     899999998863

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.66  E-value=0.39  Score=42.26  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=29.9

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|+|| |..|...+..|.+     +|++|+++.|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~-----~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKN-----RGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHh-----CCCEEEEEEcCc
Confidence            36999996 9999999999999     999999998864

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=89.53  E-value=0.38  Score=47.22  Aligned_cols=39  Identities=13%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             CcEEEECCChhHHHHHHHHHH-hcCCCCCCeEEEEecCCCccc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQ-YSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~-~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      +||+|||||++|+++|..|++ ..   .|++|+|+|+++..++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~---~g~~V~vie~~~~~~~   41 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVG---SKADVKVINKSRFSYF   41 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHG---GGSEEEEEESSSEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCC---CCCeEEEEeCCCCcee
Confidence            589999999999999999998 33   6899999999986543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.48  E-value=0.34  Score=45.22  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|..|..-|..|+.      |++|++++++.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~laa------G~~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIAS------KHEVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHT------TSEEEEECSCH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHHc------CCEEEEEECCH
Confidence            35789999999999999999882      89999999864

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=89.47  E-value=0.33  Score=46.00  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=30.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      ...++|+|||+|..|.++|+.|+.     .|.  ++.++|.+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~-----~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVL-----QGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-----CCCCCeEEEEeCC
Confidence            345689999999999999999999     776  89999974

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=89.37  E-value=0.42  Score=44.48  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=30.3

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      |+|+|.|| |..|...+..|.+     +|++|+++-|+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~-----~G~~V~~l~R~~   34 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNA-----RGHEVTLVSRKP   34 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEECCC
Confidence            57999998 9999999999999     999999998764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.33  E-value=0.35  Score=45.73  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      +.++|+|||+|..|.+.|+.|+.     .|.  +|.++|.+
T Consensus         5 ~~~kI~IIGaG~vG~sla~~l~~-----~~~~~ev~l~Di~   40 (316)
T 1ldn_A            5 GGARVVVIGAGFVGASYVFALMN-----QGIADEIVLIDAN   40 (316)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh-----CCCCCEEEEEeCC
Confidence            34689999999999999999988     664  89999875

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.30  E-value=0.39  Score=47.92  Aligned_cols=35  Identities=23%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.|+|+|+|-.|.++|..|+.     .|.+|++.|++.
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa-----~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQ-----AGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEcCCH
Confidence            35779999999999999999999     999999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=89.22  E-value=0.42  Score=42.20  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=30.0

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|+|| |..|...+..|.+     +|++|+++.|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~-----~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARR-----RGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHH-----CCCEEEEEEecc
Confidence            36999998 9999999999999     999999998863

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=89.20  E-value=0.36  Score=48.30  Aligned_cols=40  Identities=18%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcC---------------CCCC-CeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSS---------------KNWH-PRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~---------------~~~G-~~V~VlE~~~~   60 (487)
                      ..+|+|||+|..|+-+|..|++...               ...| .+|+|+++++.
T Consensus       147 ~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          147 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            5689999999999999999997100               0025 49999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.20  E-value=0.43  Score=42.66  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=31.2

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|.|| |..|...|..|++     +|++|+++.|+.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~-----~G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKN-----KGHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHh-----CCCeEEEEECCh
Confidence            568999998 9999999999999     999999999864

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.19  E-value=0.3  Score=46.48  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+|+|||+|..|+-+|..|++     .| +|+++++.
T Consensus       163 ~~~v~VvG~G~~g~e~a~~l~~-----~~-~v~~v~~~  194 (357)
T 4a9w_A          163 GMRVAIIGGGNSGAQILAEVST-----VA-ETTWITQH  194 (357)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT-----TS-EEEEECSS
T ss_pred             CCEEEEECCCcCHHHHHHHHHh-----hC-CEEEEECC
Confidence            4689999999999999999999     88 69999886

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=89.17  E-value=0.39  Score=50.80  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             CCCcEEEEC--CChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIG--SGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIG--aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ...+|+|||  +|..|+-+|..|++     .|.+|+++++.+.+
T Consensus       522 ~g~~VvViG~ggG~~g~e~A~~L~~-----~g~~Vtlv~~~~~l  560 (690)
T 3k30_A          522 DGKKVVVYDDDHYYLGGVVAELLAQ-----KGYEVSIVTPGAQV  560 (690)
T ss_dssp             SSSEEEEEECSCSSHHHHHHHHHHH-----TTCEEEEEESSSST
T ss_pred             CCCEEEEEcCCCCccHHHHHHHHHh-----CCCeeEEEeccccc
Confidence            345799999  99999999999999     99999999987654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=89.09  E-value=0.43  Score=44.19  Aligned_cols=35  Identities=20%  Similarity=0.410  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++|+|||+|-+|-++|+.|++     .|. +|+|+.|+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~-----~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKD-----NFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHH-----TTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence            46789999999999999999999     998 999998764

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.99  E-value=0.35  Score=47.78  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=30.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+..|||.|..|+..|..|++     .|++|++++++.
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~-----~G~~V~~~D~~~   44 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAK-----HGVDVLGVDINQ   44 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCccEEEeeCHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            3568999999999999999999     999999999865

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.99  E-value=0.16  Score=45.72  Aligned_cols=34  Identities=18%  Similarity=0.101  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|-.|...|..|.+     .|+ |+++|++.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~-----~g~-v~vid~~~   41 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRG-----SEV-FVLAEDEN   41 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTT-----SEE-EEEESCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHh-----CCe-EEEEECCH
Confidence            45689999999999999999999     999 99999864

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=88.96  E-value=0.43  Score=44.77  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=31.9

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++++|+|.|| |..|...+..|.+     +|++|+++.+...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~-----~g~~V~~~~r~~~   42 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVA-----SGEEVTVLDDLRV   42 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHH-----TTCCEEEECCCSS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHH-----CCCEEEEEecCCc
Confidence            4578999999 9999999999999     9999999988653

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=88.90  E-value=0.65  Score=40.99  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=29.3

Q ss_pred             CcEEEECC-ChhHHHHHHHHH-HhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLR-QYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~-~~~~~~~G~~V~VlE~~~   59 (487)
                      +.|+|+|| |-.|...|..|+ +     +|++|+++.|+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~-----~g~~V~~~~r~~   40 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTY-----TDMHITLYGRQL   40 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHH-----CCCEEEEEESSH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhc-----CCceEEEEecCc
Confidence            45999995 999999999999 8     999999998864

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.87  E-value=0.33  Score=44.91  Aligned_cols=35  Identities=17%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++|+|||+|-+|.++|+.|++     .|. +|+|+.|+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~-----~G~~~v~v~~R~~  151 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYK-----IVRPTLTVANRTM  151 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHT-----TCCSCCEEECSCG
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEeCCH
Confidence            35689999999999999999999     998 999998864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=88.80  E-value=0.22  Score=54.92  Aligned_cols=36  Identities=6%  Similarity=0.061  Sum_probs=32.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+|+|||+|..|+-+|..|++     .|.+|+|+|+.+++
T Consensus       284 gk~vvViGgG~~g~E~A~~L~~-----~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          284 GARIAVATTNDSAYELVRELAA-----TGGVVAVIDARSSI  319 (965)
T ss_dssp             CSSEEEEESSTTHHHHHHHHGG-----GTCCSEEEESCSSC
T ss_pred             CCeEEEEcCCHHHHHHHHHHHH-----cCCcEEEEECCCcc
Confidence            3689999999999999999999     99999999998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=88.77  E-value=0.36  Score=44.86  Aligned_cols=33  Identities=36%  Similarity=0.518  Sum_probs=29.3

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCC--CCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNW--HPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~--G~~V~VlE~~   58 (487)
                      .++|.|||+|..|.+.|..|++     .  |++|++++++
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~-----~g~~~~V~~~d~~   40 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKR-----DHPHYKIVGYNRS   40 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HCTTSEEEEECSS
T ss_pred             cceEEEEeeCHHHHHHHHHHHh-----CCCCcEEEEEcCC
Confidence            3679999999999999999998     6  6899999875

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=88.75  E-value=0.36  Score=48.48  Aligned_cols=33  Identities=15%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     .|++|++++++.
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~-----~G~~V~v~dr~~   38 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVES-----RGYTVAIYNRTT   38 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             CcEEEEeeHHHHHHHHHHHHh-----CCCEEEEEcCCH
Confidence            579999999999999999999     999999999863

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=88.74  E-value=0.43  Score=44.76  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.+||-|..|..-|..|.+     +|++|+|++++.
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~-----~G~~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLK-----AGYLLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSSH
T ss_pred             cCEEEEeeehHHHHHHHHHHHh-----CCCeEEEEcCCH
Confidence            4579999999999999999999     999999999864

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=88.67  E-value=0.45  Score=43.38  Aligned_cols=32  Identities=22%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +|+|||+|-+|-++++.|.+     .|. +|+|+.|+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~-----~G~~~I~v~nR~~  142 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQ-----MGVKDIWVVNRTI  142 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-----TTCCCEEEEESCH
T ss_pred             eEEEECcHHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence            89999999999999999999     998 999998863

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=88.56  E-value=0.51  Score=43.49  Aligned_cols=35  Identities=17%  Similarity=0.216  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++++|+|+|-+|.++|+.|++     .|. +|+|+.|+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~-----~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQ-----AGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH-----TCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHH-----cCCCEEEEEeCCH
Confidence            46789999999999999999999     995 999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=88.50  E-value=0.35  Score=49.55  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||+|.+|+-.|..|++     .|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~-----~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAK-----QAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----HBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhh-----cCceEEEEEcCCc
Confidence            4789999999999999999999     8999999998754

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.49  E-value=0.51  Score=44.48  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..++++|+|+|-+|-++|+.|++     .|. +|+|+.|+
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~-----~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAAL-----DGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHH-----CCCCEEEEEECC
Confidence            45789999999999999999999     998 89999886

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=88.30  E-value=0.65  Score=43.94  Aligned_cols=39  Identities=15%  Similarity=0.199  Sum_probs=33.5

Q ss_pred             CCCCCCCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           15 QPTFQQEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        15 ~~~~~~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      |+.....+.|+|.|| |..|...+..|.+     +|++|+++.++
T Consensus         5 ~~~~~~~~~vlVTGatG~iG~~l~~~L~~-----~g~~V~~~~r~   44 (342)
T 1y1p_A            5 NAVLPEGSLVLVTGANGFVASHVVEQLLE-----HGYKVRGTARS   44 (342)
T ss_dssp             TCSSCTTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred             cccCCCCCEEEEECCccHHHHHHHHHHHH-----CCCEEEEEeCC
Confidence            444455678999998 9999999999999     99999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.24  E-value=0.54  Score=43.62  Aligned_cols=35  Identities=17%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++|+|+|+|-+|.++|+.|++     .|. +|+|+.|+.
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~-----~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVT-----HGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEECCH
Confidence            45789999999999999999999     998 799998763

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=88.23  E-value=0.52  Score=45.36  Aligned_cols=34  Identities=18%  Similarity=0.222  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|+|+|-.|..+|..|.+     .|.+|++.+.+
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~-----~GakVvv~D~~  205 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNT-----EGAKLVVTDVN  205 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSC
T ss_pred             CcCEEEEECchHHHHHHHHHHHH-----CCCEEEEEcCC
Confidence            45789999999999999999999     99999999864

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=88.21  E-value=0.37  Score=44.87  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .+.|+|+|+|-.|.++|..|++     .| +|+|+.|+
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~-----~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAK-----DN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTS-----SS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHH-----CC-CEEEEECC
Confidence            4679999999999999999999     99 99999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.21  E-value=0.5  Score=47.46  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....|+|||+|..|..+|..|+.     .|.+|+++|++.
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka-----~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKG-----QGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence            45789999999999999999999     999999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=88.16  E-value=0.53  Score=43.59  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..++|+|||+|-+|-+.|+.|++     .|. +|+|+.|+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~-----~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLD-----QQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHT-----TCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHh-----cCCCeEEEEECCH
Confidence            45789999999999999999999     996 999998853

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=88.12  E-value=0.16  Score=49.73  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=32.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||||+||++||.+|++..   .+.+|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~---~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLAD---PSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC---TTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcC---cCCeEEEEeCCCC
Confidence            478999999999999999999833   4579999999875

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=88.12  E-value=0.54  Score=46.04  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.|+|||.|..|..+|..|+.     .|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra-----~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKA-----MGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHH-----CCCEEEEEeCCh
Confidence            35789999999999999999999     999999999764

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=87.84  E-value=0.096  Score=46.06  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=31.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||+|..|.+.|..|.+     .|++|++++++.
T Consensus        18 ~~~~I~iIG~G~mG~~la~~L~~-----~G~~V~~~~r~~   52 (201)
T 2yjz_A           18 KQGVVCIFGTGDFGKSLGLKMLQ-----CGYSVVFGSRNP   52 (201)
Confidence            45679999999999999999999     999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=88.02  E-value=0.48  Score=43.40  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=29.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +|+|||+|-.|.+.|..|.+     .|.+|++++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~-----~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALRE-----AGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            79999999999999999999     899999999863

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=87.94  E-value=0.6  Score=44.49  Aligned_cols=36  Identities=31%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|.|||.|-.|.+.|..|+.     .|.+|++++++..
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~-----~G~~V~~~d~~~~  184 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKG-----FNMRILYYSRTRK  184 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHh-----CCCEEEEECCCcc
Confidence            35689999999999999999999     9999999998653

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=87.84  E-value=0.59  Score=43.90  Aligned_cols=39  Identities=15%  Similarity=0.188  Sum_probs=31.9

Q ss_pred             CCCCCCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           16 PTFQQEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        16 ~~~~~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....+++.|+|+|| |..|...+..|.+     .|++|+++.|+.
T Consensus         6 ~~~~m~~~ilVtGatG~iG~~l~~~L~~-----~g~~V~~l~R~~   45 (318)
T 2r6j_A            6 EENGMKSKILIFGGTGYIGNHMVKGSLK-----LGHPTYVFTRPN   45 (318)
T ss_dssp             ---CCCCCEEEETTTSTTHHHHHHHHHH-----TTCCEEEEECTT
T ss_pred             cccCCCCeEEEECCCchHHHHHHHHHHH-----CCCcEEEEECCC
Confidence            33345568999997 9999999999999     999999998864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=87.84  E-value=0.46  Score=52.70  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ..+|+|||||..|+-+|..|++     .|. +|+|+++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~-----~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALR-----CGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-----TTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHH-----cCCCEEEEEEecC
Confidence            3489999999999999999999     996 999999876

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=87.76  E-value=0.66  Score=43.04  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=30.5

Q ss_pred             CCCcEEEECCC-hhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSG-IGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaG-iaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+| +.|..+|..|.+     .|..|+|+.+.
T Consensus       164 ~gk~vvVIG~s~iVG~p~A~lL~~-----~gAtVtv~hs~  198 (301)
T 1a4i_A          164 AGRHAVVVGRSKIVGAPMHDLLLW-----NNATVTTCHSK  198 (301)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHH-----TTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHh-----CCCeEEEEECC
Confidence            46789999999 689999999999     99999999654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.64  E-value=0.56  Score=44.76  Aligned_cols=33  Identities=24%  Similarity=0.510  Sum_probs=29.2

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCC--CeEEEEecC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWH--PRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G--~~V~VlE~~   58 (487)
                      .++|+|||+ |..|.++|+.|+.     .|  .+|+++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~-----~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAM-----MRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHH-----TTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHh-----cCCCCEEEEEeCC
Confidence            468999998 9999999999999     77  489999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=87.54  E-value=0.64  Score=42.54  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCcEEEECCC-hhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSG-IGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaG-iaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+| +.|..+|..|.+     .|..|+++.++
T Consensus       149 ~Gk~vvVvG~s~iVG~plA~lL~~-----~gAtVtv~~~~  183 (276)
T 3ngx_A          149 HENTVTIVNRSPVVGRPLSMMLLN-----RNYTVSVCHSK  183 (276)
T ss_dssp             CSCEEEEECCCTTTHHHHHHHHHH-----TTCEEEEECTT
T ss_pred             CCCEEEEEcCChHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence            45789999976 799999999999     99999999764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=87.52  E-value=0.5  Score=44.70  Aligned_cols=33  Identities=27%  Similarity=0.399  Sum_probs=29.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~   58 (487)
                      .++|+|||||-.|.+.|+.|+.     .|  .+|.++|.+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~-----~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVN-----QSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCCCEEEEEeCC
Confidence            3689999999999999999998     77  489999864

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=87.50  E-value=0.67  Score=42.99  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+ |+.|..+|..|.+     .|..|+++.++
T Consensus       164 ~Gk~vvVIG~s~iVG~p~A~lL~~-----~gAtVtv~~~~  198 (300)
T 4a26_A          164 AGKRAVVLGRSNIVGAPVAALLMK-----ENATVTIVHSG  198 (300)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHH-----TTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-----CCCeEEEEeCC
Confidence            4578999995 5699999999999     99999999874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.40  E-value=0.49  Score=46.45  Aligned_cols=35  Identities=26%  Similarity=0.365  Sum_probs=31.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ...+|+|||+|-.|..+|..|+.     .|. +|++++++.
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~-----~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVD-----RGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHH-----HCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHH-----CCCCEEEEEeCCH
Confidence            45789999999999999999999     898 999998864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=87.30  E-value=0.52  Score=41.72  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|+|| |..|...+..|.+     +|++|+++.|+.
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~-----~g~~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALN-----RGFEVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHT-----TTCEEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHH-----CCCEEEEEEcCc
Confidence            468999996 9999999999999     999999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.23  E-value=0.7  Score=40.00  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.|+|+|| |..|...+..|.+     +|++|+++.|+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~-----~g~~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQ-----AGYEVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHH-----CCCeEEEEEeCh
Confidence            67999999 9999999999999     999999998864

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=87.23  E-value=0.45  Score=45.18  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ..++|+||| +|..|.+.|..|+.     .|  .+|++++...
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~-----~g~~~ev~l~Di~~   44 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKM-----NPLVSVLHLYDVVN   44 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHH-----CTTEEEEEEEESSS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh-----CCCCCEEEEEeCCC
Confidence            446899999 79999999999998     88  7999998654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=87.18  E-value=0.43  Score=46.77  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|+..|..|++      |++|++++++.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~------G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL------QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT------TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC------CCEEEEEECCH
Confidence            369999999999999999985      68999999853

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=87.15  E-value=0.6  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .+.++|+|||||-.|.+.|+.|+.     .+.  ++.++|.+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~-----~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVL-----QGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHc-----CCCCCEEEEEeCC
Confidence            345789999999999999999998     664  78888874

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=87.13  E-value=0.64  Score=42.81  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      .++|+|||+|-+|-++|+.|++     .|. +|+|+.|+
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~-----~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKN-----SGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHH-----TTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHH-----CCCCEEEEEeCC
Confidence            4689999999999999999999     996 89999876

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=87.04  E-value=0.58  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=29.5

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ++|+|||| |..|.+.|+.|++     .|  .+|.++|...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~-----~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKN-----SPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHT-----CTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHh-----CCCCcEEEEEeCCc
Confidence            47999998 9999999999998     77  7899999864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=87.01  E-value=0.72  Score=43.37  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..++++|+|+|-+|-++|+.|++     .|. +|+|+.|+
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~-----~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAI-----EGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-----cCCCEEEEEECC
Confidence            45789999999999999999999     997 89999886

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=87.01  E-value=0.6  Score=44.40  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+.|+|.|| |..|...+..|.+     +|++|+++.+...
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~-----~G~~V~~~~r~~~   54 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRT-----QGRTVRGFDLRPS   54 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHH-----TTCCEEEEESSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHh-----CCCEEEEEeCCCC
Confidence            4568999999 9999999999999     9999999988653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=87.00  E-value=0.63  Score=47.10  Aligned_cols=54  Identities=11%  Similarity=0.130  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC----ceEecCEEEEccCCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG----NSYTCQITVVATPLD  309 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~a~~~~  309 (487)
                      ..+.+...+++.|++|+++++|++|+.++....+.+.+|    +++.||.||.|++..
T Consensus       274 ~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~  331 (502)
T 4g6h_A          274 LSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNK  331 (502)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEE
T ss_pred             HHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCc
Confidence            445556666778999999999999853322224445566    369999999999864

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=86.72  E-value=0.55  Score=47.41  Aligned_cols=34  Identities=18%  Similarity=0.125  Sum_probs=30.6

Q ss_pred             CCcEEEECCChhHHH-HHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSS-LAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLs-aA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|.|||.|-+|++ +|..|++     .|++|++.|.+.
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~-----~G~~V~~~D~~~   56 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLAN-----EGYQISGSDLAP   56 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHH-----TTCEEEEECSSC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHh-----CCCeEEEEECCC
Confidence            468999999999997 6999999     999999999764

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=86.51  E-value=0.75  Score=45.12  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|||.|..|..+|..|+.     .|.+|+++|++.
T Consensus       211 GktVgIiG~G~IG~~vA~~Lka-----~Ga~Viv~D~~p  244 (436)
T 3h9u_A          211 GKTACVCGYGDVGKGCAAALRG-----FGARVVVTEVDP  244 (436)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHH-----CCCEEEEECCCh
Confidence            5789999999999999999999     999999999864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=86.41  E-value=0.81  Score=42.14  Aligned_cols=34  Identities=18%  Similarity=0.078  Sum_probs=30.3

Q ss_pred             CCCcEEEECCC-hhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSG-IGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaG-iaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+| +.|..+|..|.+     .|..|+++.++
T Consensus       158 ~gk~vvVIG~s~iVG~p~A~lL~~-----~gAtVtv~hs~  192 (288)
T 1b0a_A          158 FGLNAVVIGASNIVGRPMSMELLL-----AGCTTTVTHRF  192 (288)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHT-----TTCEEEEECSS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence            46789999999 679999999999     99999999654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=86.32  E-value=0.76  Score=41.79  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .|. +++|+|..
T Consensus        28 ~~~VlvvG~GglG~~va~~La~-----~Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAG-----AGVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH-----TTCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHH-----cCCCeEEEEeCC
Confidence            4689999999999999999999     996 88888874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=86.30  E-value=0.82  Score=42.41  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=30.7

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..+.|+|+| +|-.|.++|..|++     .|.+|+++.|+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~-----~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAG-----EGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-----CcCEEEEEECC
Confidence            346799999 89999999999999     99999999875

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=86.30  E-value=0.77  Score=43.66  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=32.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|.|||.|-.|.+.|..|+.     .|.+|++++++..
T Consensus       163 ~g~~vgIIG~G~iG~~vA~~l~~-----~G~~V~~~dr~~~  198 (333)
T 3ba1_A          163 SGKRVGIIGLGRIGLAVAERAEA-----FDCPISYFSRSKK  198 (333)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHT-----TTCCEEEECSSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEECCCch
Confidence            35679999999999999999999     9999999998653

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=86.06  E-value=0.71  Score=45.50  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC---eEEEEe
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP---RILMFE   56 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~---~V~VlE   56 (487)
                      ...+|+|+|||-+|.++|..|.+     .|.   +|+|++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~-----~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTE-----AGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-----TTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHH-----cCCCcCeEEEEE
Confidence            35689999999999999999999     997   899998

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=86.05  E-value=0.63  Score=44.26  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=31.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|.|||.|-.|...|..|+.     .|.+|++++++.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~-----~G~~V~~~d~~~  188 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKP-----FGVQRFLYTGRQ  188 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGG-----GTCCEEEEESSS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-----CCCEEEEECCCC
Confidence            35689999999999999999999     999999999864

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=85.76  E-value=0.66  Score=43.83  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=29.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .++|+|||||-.|.+.|+.|+.     .+.  ++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~-----~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQ-----QGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHc-----CCCCCEEEEEeCC
Confidence            4689999999999999999998     665  89999874

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=85.73  E-value=0.87  Score=43.21  Aligned_cols=33  Identities=21%  Similarity=0.474  Sum_probs=29.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .|. +++|+|..
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~-----aGVg~ItlvD~D   67 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIA-----WGVRKITFVDNG   67 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEecCC
Confidence            5689999999999999999999     996 78888874

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=85.52  E-value=1  Score=41.42  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+ |+.|-.+|..|.+     .|..|+++.++
T Consensus       159 ~Gk~vvVvGrs~iVG~p~A~lL~~-----~gAtVtv~h~~  193 (285)
T 3p2o_A          159 EGKDAVIIGASNIVGRPMATMLLN-----AGATVSVCHIK  193 (285)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHH-----TTCEEEEECTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHH-----CCCeEEEEeCC
Confidence            4678999996 5689999999999     99999999764

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=85.49  E-value=1  Score=41.42  Aligned_cols=34  Identities=18%  Similarity=0.111  Sum_probs=29.9

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+ |+.|..+|..|.+     .|..|+++.++
T Consensus       160 ~Gk~vvVvGrs~iVG~plA~lL~~-----~gAtVtv~hs~  194 (286)
T 4a5o_A          160 YGMDAVVVGASNIVGRPMALELLL-----GGCTVTVTHRF  194 (286)
T ss_dssp             TTCEEEEECTTSTTHHHHHHHHHH-----TTCEEEEECTT
T ss_pred             CCCEEEEECCCchhHHHHHHHHHH-----CCCeEEEEeCC
Confidence            4678999995 5799999999999     99999999764

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=85.44  E-value=0.77  Score=42.97  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|.|| |..|...+..|.+     +|++|+++.++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~-----~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQ-----NNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHT-----TTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHh-----CCCeEEEEccCC
Confidence            467999998 9999999999999     999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-19
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	7e-18
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-16
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-13
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	2e-13
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	8e-13
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	5e-09
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-08
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-08
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	8e-08
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	6e-05
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	2e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	8e-04
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.002
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	0.002
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.002
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	0.002
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.003
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.004
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.004

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 2e-19
 Identities = 52/318 (16%), Positives = 100/318 (31%), Gaps = 30/318 (9%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASIL 82
           V ++G GI G + A  L           +++ E    VGGR  T+     +  + G S +
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLN-----VVVLEARDRVGGRTYTLRNQKVKYVDLGGSYV 56

Query: 83  HPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLAN 142
            P     +   K L L+       E            F      V + + +         
Sbjct: 57  GPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITY--------- 107

Query: 143 SVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLE 202
             L    +  ++  M     S         E ++   + E +D++        L      
Sbjct: 108 --LDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQL------ 159

Query: 203 EELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAAG 262
                     L +      ++ + +   +   G    +    +GG      GG+ Q++  
Sbjct: 160 ----ATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSER 215

Query: 263 LINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPISI 321
           +++     + L   +  I   RE   + +     Y  +  + A P      +HF+PP  +
Sbjct: 216 IMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPP--L 273

Query: 322 PERKLQHTHATFVRGALN 339
           P  + Q     F  G L 
Sbjct: 274 PMMRNQMITRVFPPGILT 291

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 82.5 bits (202), Expect = 7e-18
 Identities = 42/293 (14%), Positives = 82/293 (27%), Gaps = 19/293 (6%)

Query: 23  TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASIL 82
            V ++G GI G ++AH LR           ++ E +  +GG + T  ++G   E G +  
Sbjct: 2   NVAVVGGGISGLAVAHHLRSR-----GTDAVLLESSARLGGAVGTHALAGYLVEQGPNSF 56

Query: 83  HPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPF-VQKIVSLA 141
             +   T      LNL+ +   +   +    ++   +      S  + +   +  + +  
Sbjct: 57  LDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARL 116

Query: 142 NSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSL 201
                +          ES                    V   +            T   L
Sbjct: 117 RVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPML 176

Query: 202 EEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMAA 261
            +   + R   L               Q         A +     G L   +GG   +  
Sbjct: 177 VKMEREHRSLILGAI----------RAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLID 226

Query: 262 GLINRSDVALHLHEEIESISYLREYYELNSTKGNS---YTCQITVVATPLDEL 311
            L      A H+   +E ++     + L   +       +    V+A P    
Sbjct: 227 ALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHAT 279

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 77.5 bits (189), Expect = 4e-16
 Identities = 49/337 (14%), Positives = 97/337 (28%), Gaps = 39/337 (11%)

Query: 7   LILLIFSPQPTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66
            + +  +          V I+G+G+ G S A+ L          ++ + E +   GGR+ 
Sbjct: 16  FLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAG---AGH--QVTVLEASERPGGRVR 70

Query: 67  TVTIS--GQTFEAGASILHPKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKT 124
           T      G     G   L  K+     + +  +L+  +     D+  + I +  K V + 
Sbjct: 71  TYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEV 130

Query: 125 ISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESV 184
                                         L       S   K            V E +
Sbjct: 131 -------------------------KKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEEL 165

Query: 185 DEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAG 244
                   L      S +E LI          +++  +   + G  +S         +  
Sbjct: 166 KRTNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFA 225

Query: 245 SGGGLWAVEGGNWQMAAGLINRSDVALHLHEEIESISY----LREYYELNSTKGNSYTCQ 300
                  +  G  ++   +       +H + ++  I      +   YE  S +  S T  
Sbjct: 226 YEKRFDEIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTAD 285

Query: 301 ITVVATPLDEL-NLHFSPPISIPERKLQHTHATFVRG 336
             +V T    +  + F+PP  +  +K     + F   
Sbjct: 286 YVIVCTTSRAVRLIKFNPP--LLPKKAHALRSVFTPY 320

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 61/459 (13%), Positives = 123/459 (26%), Gaps = 24/459 (5%)

Query: 16  PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTF 75
           PT ++   V IIGSG+ G + A  L+ +        + + E    VGGR+AT        
Sbjct: 1   PT-KKTGKVIIIGSGVSGLAAARQLQSFG-----MDVTLLEARDRVGGRVATFRKGNYVA 54

Query: 76  EAGASILHPKNYHTVN-FTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFV 134
           + GA ++     + +   +K +N++       +    +     +    K   V      +
Sbjct: 55  DLGAMVVTGLGGNPMAVVSKQVNMELA--KIKQKCPLYEANGQAVPKEKDEMVEQEFNRL 112

Query: 135 QKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLF 194
            +  S  +  L         + +    E  +    K+ +  +     + V    +   L 
Sbjct: 113 LEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEELKELL 172

Query: 195 NLTAR----SLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLW 250
           N          E        S +     +T    +        +       LA + G L 
Sbjct: 173 NKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCKEYDELAETQGKLE 232

Query: 251 A-VEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD 309
             ++       + +   S     L     ++ +         +  +              
Sbjct: 233 EKLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHL 292

Query: 310 ELNLHFSPPISIPERKLQHTHATFVRGALNPAYFGLDGVSKIPELVATIEDPDLPFTCIS 369
            +   +S         L     T VR     A               T         C  
Sbjct: 293 TVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTL 352

Query: 370 VLKQHDENDFTYKIFSRKPMTDTLLDDIFSVRKETIRINWGAYPHYKAPEVFAPFILDGR 429
            L    +     +     P+ +     +   R      +   Y     P    P I    
Sbjct: 353 PLGVLKQQPPAVQF--VPPLPEWKTSAVQ--RMVAAGSSGNDYDLMAQPITPGPSIPGAP 408

Query: 430 ----HLYYVNAF--ENAASTMETSAVAAENVARLILSRF 462
                L++       N  +T+  + ++    A  I  +F
Sbjct: 409 QPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 447

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 69.2 bits (167), Expect = 2e-13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASI 81
          P V ++G+G+ G S A  L +    +    +L+ E    +GGRM     +G   E GA+ 
Sbjct: 1  PRVIVVGAGMSGISAAKRLSEAGITD----LLILEATDHIGGRMHKTNFAGINVELGANW 56

Query: 82 LHPKNYHTVNF 92
          +   N   +N 
Sbjct: 57 VEGVNGGKMNP 67

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 67.6 bits (163), Expect = 8e-13
 Identities = 43/306 (14%), Positives = 98/306 (32%), Gaps = 30/306 (9%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V +IG+G+ G + A+ L+ +        + +FE  G  GG++ +V+  G  ++ GA+ + 
Sbjct: 4   VAVIGAGVSGLAAAYKLKIHGLN-----VTVFEAEGKAGGKLRSVSQDGLIWDEGANTMT 58

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS 143
                       L L+ K       +  +   +G+  +  +         +  I S   S
Sbjct: 59  ESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPS-------NPIDLIKSNFLS 111

Query: 144 VLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEE 203
               L+  L  +  ++   S V    +    F  R   + V + L    +        + 
Sbjct: 112 TGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDS 171

Query: 204 ELIDARLSPLLMQE------LVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNW 257
             +      L   E      ++  I      ++    G     +      G ++  GG  
Sbjct: 172 LSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQ 231

Query: 258 QMAAGLINR-SDVALHLHEEIESISYL-----------REYYELNSTKGNSYTCQITVVA 305
            +   +     +  L L+  +  +S                   +  +    +    ++ 
Sbjct: 232 TLTDAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMT 291

Query: 306 TPLDEL 311
            PL ++
Sbjct: 292 APLCDV 297

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 5e-09
 Identities = 44/292 (15%), Positives = 89/292 (30%), Gaps = 17/292 (5%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V ++G+GI    L+  L     K     +L  ++    GG  A+VT+S    +   + + 
Sbjct: 8   VIVLGTGITECILSGLLSVDGKK-----VLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62

Query: 84  PKNYHTVNFTKL---LNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSL 140
            +   +         ++L PK   ++ + T   I            VS +  F Q     
Sbjct: 63  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQG---K 119

Query: 141 ANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARS 200
              V       +S   M  F +  + KFL++  S++   +       L    +  +  + 
Sbjct: 120 IYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKF 179

Query: 201 LEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLAGSGGGLWAVEGGNWQMA 260
                    +   +         +     S     L                  G  ++ 
Sbjct: 180 GLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELP 239

Query: 261 AGL---INRSDVALHLHEEIESISYLREYYELNS--TKGNSYTCQITVVATP 307
            G             L   I+ + Y ++  +     TK  ++   + V+A P
Sbjct: 240 QGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPL-VIADP 290

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.5 bits (129), Expect = 1e-08
 Identities = 32/294 (10%), Positives = 77/294 (26%), Gaps = 27/294 (9%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V ++G+G+    L+  +     K     +L  +RN   GG  +++T   + ++    +  
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKK-----VLHMDRNPYYGGESSSITPLEELYKRFQLLEG 63

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANS 143
           P           ++L PK   ++       ++           V  +  +    +    S
Sbjct: 64  PPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPS 123

Query: 144 VLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEE 203
                         E+   + +  F K         V    +   K     +    S+ +
Sbjct: 124 -----------TETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRD 172

Query: 204 ELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLA--------GSGGGLWAVEGG 255
                 L   ++      +        L    L     +                    G
Sbjct: 173 VYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYG 232

Query: 256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVAT 306
             ++  G             L++ ++ I           ++G    C+  +   
Sbjct: 233 LGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDP 286

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (126), Expect = 3e-08
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEA-GASIL 82
            I+GSG+ G+  A+ L     K    ++L+ E+   +GG   T    G      GA I 
Sbjct: 4  YIIVGSGLFGAVCANEL----KKLNK-KVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIF 58

Query: 83 HPKNYHTVNFTK 94
          H  + +  ++  
Sbjct: 59 HTNDKYIWDYVN 70

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 51.7 bits (123), Expect = 8e-08
 Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 8/77 (10%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS---GQTFEAGAS 80
          + I+G+G  G+ +   L +   K    ++ + ++   +GG       S         G  
Sbjct: 5  ILIVGAGFSGAVIGRQLAE---KGH--QVHIIDQRDHIGGNSYDARDSETNVMVHVYGPH 59

Query: 81 ILHPKNYHTVNFTKLLN 97
          I H  N    N+     
Sbjct: 60 IFHTDNETVWNYVNKHA 76

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEA 77
          + I G+GIGG S A  L Q        ++ + E +  +      + I     EA
Sbjct: 4  ILIAGAGIGGLSCALALHQAG----IGKVTLLESSSEIRPLGVGINIQPAAVEA 53

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66
          P +C++GSG  G   A  L ++ S+     + ++E+  V  G + 
Sbjct: 2  PQICVVGSGPAGFYTAQHLLKHHSR---AHVDIYEKQLVPFGLVR 43

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           + IIG+G  G   A  L     +    ++ +FER G  GG           + +  S   
Sbjct: 7   IAIIGAGPSGLVTAKALLA---EKAFDQVTLFERRGSPGGVWN--------YTSTLSNKL 55

Query: 84  PKNYHTVNFTKLLNLKPKDPPSSEDSTAFGIW 115
           P        T    + P   P         + 
Sbjct: 56  PVPSTNPILTTEPIVGPAALPVYPSPLYRDLQ 87

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 22/54 (40%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEA 77
          V I+G+G  G   A  L +Y  +    ++ + ++            +  +T E+
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLES 63

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 9/49 (18%)

Query: 19 QQEPT----VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63
          +++P     V ++G+G  G    + LR+         + + E  G VGG
Sbjct: 1  RRQPPEEVDVLVVGAGFSGLYALYRLREL-----GRSVHVIETAGDVGG 44

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG 63
            +IG GI GS++A++L +      +    +FE   + G 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKE-----NKNTALFESGTMGGR 41

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 35/246 (14%), Positives = 67/246 (27%), Gaps = 35/246 (14%)

Query: 24  VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILH 83
           V +IG+G+ G S A  + +      +  +L      V   R         T +  A +  
Sbjct: 3   VVVIGAGVIGLSTALCIHER-----YHSVLQPLDVKVYADR----FTPFTTTDVAAGLWQ 53

Query: 84  PKNY-----HTVNFTKLLNLKPKDPPSSEDSTAFGI-WDGSKFVFKT--------ISVSS 129
           P           N+ +           S ++   G+       +F+           V  
Sbjct: 54  PYTSEPSNPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLG 113

Query: 130 TVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPVFESVDEM-- 187
                 + + +             +L    + +   ++  +    F  R V ES +E+  
Sbjct: 114 FRKLTPRELDMFPDYRYGWFNTSLILEGRKYLQWLTERLTERGVKFFLRKV-ESFEEVAR 172

Query: 188 LKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRI----NYGQS-----LSISGLAG 238
                + N T         D     L  ++L    +      NYG       +       
Sbjct: 173 GGADVIINCTGVWAGVLQPDPLQVRLEREQLRFGSSNTEVIHNYGHGGYGLTIHWGCALE 232

Query: 239 AVSLAG 244
              L G
Sbjct: 233 VAKLFG 238

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGAS 80
          P + IIG+GI G++LA  L      N    I + ++  +     +T    G  F+   S
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNN----ITVLDQGPLNMPGGSTSHAPGLVFQTNPS 56

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 24 VCIIGSGIGGSSLAHFLRQ--YSSKNWHPRILMFERNGVVGGRM 65
          + I+GSG      A  L +   ++++    + M E      G +
Sbjct: 5  IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLV 48

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 6/55 (10%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN-GVVGGRMATVTISGQTFEA 77
          + ++G  I G + A  LR          + ++ER+   + G    + +  +    
Sbjct: 7  IAVVGGSISGLTAALMLRDAGV-----DVDVYERSPQPLSGFGTGIVVQPELVHY 56

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA 66
          V +IG G  G   A    +  +      +L+ ++   +G ++A
Sbjct: 5  VIVIGGGPSGLMAAIGAAEEGAN-----VLLLDKGNKLGRKLA 42

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 24 VCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM 65
          V I+G+G  G S A+ + +        ++ + E +   GG  
Sbjct: 53 VIIVGAGSSGLSAAYVIAK---NRPDLKVCIIESSVAPGGGS 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.93
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.9
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.89
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.89
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.84
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.81
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.72
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.68
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.67
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.55
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.51
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.43
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.34
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.32
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.3
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.29
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.2
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	99.16
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.08
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.02
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.97
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.92
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.9
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.88
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.84
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.76
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	98.75
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.74
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.73
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.72
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.7
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.69
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.67
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.67
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.66
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.66
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.65
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.65
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.64
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.63
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.63
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	98.63
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.61
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.54
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.52
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.49
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.43
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.41
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.4
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.39
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.38
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.37
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.37
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.36
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.34
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.32
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.31
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.24
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.23
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.17
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.14
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.14
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.12
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.1
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.08
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.03
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.93
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.85
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.83
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.81
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.77
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.71
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.7
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.5
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.49
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.41
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.27
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.17
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.17
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.12
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.09
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.04
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.89
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.64
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.48
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.46
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.36
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.3
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.26
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.08
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.96
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.93
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.84
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.8
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.69
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.35
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	95.3
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.28
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.22
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.99
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.97
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	94.92
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.88
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.84
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	94.68
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.68
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.4
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.2
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	94.16
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.03
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.94
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.91
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.79
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.74
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	93.63
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.6
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.54
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.44
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.41
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	93.35
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.32
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.27
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	93.25
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.23
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.22
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.2
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.08
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.93
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.74
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.71
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.7
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.63
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.33
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	92.2
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	91.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.94
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.67
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.34
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	91.29
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.24
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.18
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.87
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.79
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.73
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.7
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.57
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	90.53
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.12
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.96
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.88
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.86
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.83
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.69
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	89.16
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.72
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.67
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.29
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.24
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	87.83
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	87.56
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.47
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.2
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.65
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	86.29
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	86.09
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.97
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	85.68
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.2
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.09
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.01
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.57
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.26
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	84.07
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.65
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	83.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	83.5
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	82.68
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	82.35
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.32
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.48
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	80.65
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.42
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.28

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-24  Score=211.71  Aligned_cols=258  Identities=19%  Similarity=0.232  Sum_probs=162.9

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEee-CCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTI-SGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~-~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      ||||||||++||+||++|++     +|++|+||||++++|||++|... +|+.+|+|+++++..+..+.++++++|++..
T Consensus         1 DViVIGaG~aGL~aA~~L~~-----~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~   75 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD-----SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETY   75 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH-----TTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHTTCCEE
T ss_pred             CEEEECCCHHHHHHHHHHHh-----CCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHcCCcce
Confidence            89999999999999999999     99999999999999999999874 6788999999999888888899999998654


Q ss_pred             CCCCCCCCceEEEE-cCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccCCCC
Q 043512          102 DPPSSEDSTAFGIW-DGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFETRPV  180 (487)
Q Consensus       102 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (487)
                      .......   ..+. +.....+...    ...........                   .....................
T Consensus        76 ~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~  129 (383)
T d2v5za1          76 KVNEVER---LIHHVKGKSYPFRGP----FPPVWNPITYL-------------------DHNNFWRTMDDMGREIPSDAP  129 (383)
T ss_dssp             ECCCSSE---EEEEETTEEEEECSS----SCCCCSHHHHH-------------------HHHHHHHHHHHHHTTSCTTCG
T ss_pred             eccCccc---eEEecCccccccccc----ccchhhhhhhh-------------------hHHHHHHHHHHhhhhcccccc
Confidence            4332211   2222 2222232211    10000000000                   000011111111111100000


Q ss_pred             CCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHHHHhh---------h-cC-CCC
Q 043512          181 FESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAGAVSL---------A-GS-GGG  248 (487)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~---------~-~~-~~g  248 (487)
                      ...       .........++.+++........... +.........+... ..+........         . .. ...
T Consensus       130 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (383)
T d2v5za1         130 WKA-------PLAEEWDNMTMKELLDKLCWTESAKQ-LATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQ  201 (383)
T ss_dssp             GGS-------TTHHHHHTSBHHHHHHHHCSSHHHHH-HHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTT
T ss_pred             cch-------hhhhhhhhhHHHHHHHHhccchHHHH-HHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcc
Confidence            000       11123345677888877766554432 23333333333322 33332222111         0 11 223


Q ss_pred             ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC-CeeecCCC
Q 043512          249 LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL-NLHFSPPI  319 (487)
Q Consensus       249 ~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~-~~~l~p~~  319 (487)
                      .+.+.+|++.+++++++..|++|++|++|++|..+++++.|++.+|++++||+||+|+|+... .+.+.|++
T Consensus       202 ~~~~~~~~~~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l  273 (383)
T d2v5za1         202 ERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPPL  273 (383)
T ss_dssp             SEEETTCTHHHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGGGGGSEEESCC
T ss_pred             eeeeccchhHHHHHHHHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHHHHhhCccCCCC
Confidence            568899999999999999999999999999999999999999999999999999999998764 34455554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.90  E-value=6.8e-23  Score=198.62  Aligned_cols=269  Identities=15%  Similarity=0.164  Sum_probs=153.0

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC--CeEecccceeEecCChhHHHHHH
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS--GQTFEAGASILHPKNYHTVNFTK   94 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~--g~~~d~G~~~~~~~~~~~~~~~~   94 (487)
                      .....++|+|||||++||+||++|++     +|++|+|||+++++||++.|+..+  ++.+|.|++++......+.++++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~-----~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~  100 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAG-----AGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIR  100 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHH-----HTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHH
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHH-----CCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHH
Confidence            34456799999999999999999999     999999999999999999998764  68999999999988888889999


Q ss_pred             HcCCCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhh
Q 043512           95 LLNLKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYES  174 (487)
Q Consensus        95 ~lgl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (487)
                      ++++.......... ....+..+......... .......... ....       ....   ..................
T Consensus       101 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-------~~~~---~~~~~~~~~~~~~~~~~~  167 (370)
T d2iida1         101 KFDLRLNEFSQEND-NAWYFIKNIRKKVGEVK-KDPGLLKYPV-KPSE-------AGKS---AGQLYEESLGKVVEELKR  167 (370)
T ss_dssp             HTTCCEEEECSCCT-TSEEEETTEEEEHHHHH-HCGGGGCCCC-CGGG-------TTCC---HHHHHHHHTHHHHHHHHH
T ss_pred             HhCCccceeeccCC-ceEEecCCccccchhhh-hhhhhhhhhh-hhhh-------hhhh---hHHHHHHHHHHHHHHHHh
Confidence            98876543222111 11333333222211000 0000000000 0000       0000   000000000000000000


Q ss_pred             ccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCC--CCcchHHHHH--hhhcCCCCce
Q 043512          175 FETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQS--LSISGLAGAV--SLAGSGGGLW  250 (487)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~--~~~~~~~g~~  250 (487)
                             .......     ......+..+++............+...    .....  ...+.+....  .........+
T Consensus       168 -------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (370)
T d2iida1         168 -------TNCSYIL-----NKYDTYSTKEYLIKEGDLSPGAVDMIGD----LLNEDSGYYVSFIESLKHDDIFAYEKRFD  231 (370)
T ss_dssp             -------SCHHHHH-----HHHTTSBHHHHHHHTSCCCHHHHHHHHH----HTTCGGGTTSBHHHHHHHHHHHTTCCCEE
T ss_pred             -------hhhhhhh-----hhccchhHHHHHHHhccccHHHHHHhhc----cccccchhhhHHHhhhhhhhhhccccccc
Confidence                   0000111     1123344555555544322221111111    11111  1122222211  1222334466


Q ss_pred             EeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEE----ccCceEecCEEEEccCCCCC-CeeecCCC
Q 043512          251 AVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNS----TKGNSYTCQITVVATPLDEL-NLHFSPPI  319 (487)
Q Consensus       251 ~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~----~~G~~~~ad~VV~a~~~~~~-~~~l~p~~  319 (487)
                      .+.+|+..++++|+++.|++|+++++|++|..+++++.|..    .++++++||+||+|+|+..+ .+.|.|++
T Consensus       232 ~~~~~~~~l~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l  305 (370)
T d2iida1         232 EIVDGMDKLPTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPL  305 (370)
T ss_dssp             EETTCTTHHHHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCC
T ss_pred             cchhhHHHHHHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCC
Confidence            89999999999999999999999999999999998876653    23468999999999998754 34555554

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.8e-22  Score=187.49  Aligned_cols=250  Identities=13%  Similarity=0.155  Sum_probs=140.5

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeC------------------------Ce
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTIS------------------------GQ   73 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~------------------------g~   73 (487)
                      +...+||||||||++||+||+.|++     +|++|+|+||++++||+++|+..+                        ++
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~-----~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV-----DGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDW   76 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGC
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccc
Confidence            4568999999999999999999999     999999999999999999997643                        23


Q ss_pred             EecccceeEecCChhHHHHHHHcCCCCCCCCC-CCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcC
Q 043512           74 TFEAGASILHPKNYHTVNFTKLLNLKPKDPPS-SEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGL  152 (487)
Q Consensus        74 ~~d~G~~~~~~~~~~~~~~~~~lgl~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (487)
                      .+|.+++++...+... ..+...+........ ...  ...+.++....+..    ..       .....      ....
T Consensus        77 ~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~-------~~~~~------~~~~  136 (297)
T d2bcgg1          77 NVDLIPKFLMANGELT-NILIHTDVTRYVDFKQVSG--SYVFKQGKIYKVPA----NE-------IEAIS------SPLM  136 (297)
T ss_dssp             CEESSCCBEETTSHHH-HHHHHHTGGGTCCEEECCC--EEEEETTEEEECCS----SH-------HHHHH------CTTS
T ss_pred             eeccCcccccCCCcce-eeeeeccccccccccccCc--ccccccCCcccccc----ch-------hhhhh------cccc
Confidence            4677777766655433 222222322211110 111  12233333322210    00       00000      0000


Q ss_pred             ChHHHhHHHHHHHHHHHHhhhhccCCCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCC
Q 043512          153 SLLRMESFTESAVDKFLKYYESFETRPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSLS  232 (487)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~  232 (487)
                      ...     .......|......+....    .    ...........++.++++..++.+.+.+.+..............
T Consensus       137 ~~~-----~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (297)
T d2bcgg1         137 GIF-----EKRRMKKFLEWISSYKEDD----L----STHQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQ  203 (297)
T ss_dssp             CHH-----HHHHHHHHHHHHHHCBTTB----G----GGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGG
T ss_pred             ccc-----cchhhhhhhhhhhhhhhcc----c----cchhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccc
Confidence            000     0011111211111110000    0    00112334567888899888887766543332221111111112


Q ss_pred             cchHHHHHhhh--------cCCCCceEeecchHHHHHHHHH---hcCCeEEeCCceEEEEEeC--CEEEEEEccCceEec
Q 043512          233 ISGLAGAVSLA--------GSGGGLWAVEGGNWQMAAGLIN---RSDVALHLHEEIESISYLR--EYYELNSTKGNSYTC  299 (487)
Q Consensus       233 ~~~~~~~~~~~--------~~~~g~~~~~gG~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~--~~v~V~~~~G~~~~a  299 (487)
                      .++...+....        ....+.++++||+++++++|++   +.|++|++|++|++|..++  +++.+.+.+|++++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~a  283 (297)
T d2bcgg1         204 QPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKA  283 (297)
T ss_dssp             SBHHHHHHHHHHHHHHHHHHSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEEC
T ss_pred             hhhhhhhhhhhhhhhcccccccCcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEEC
Confidence            33333222111        1234577999999999998866   4699999999999998764  456545668889999


Q ss_pred             CEEEEc
Q 043512          300 QITVVA  305 (487)
Q Consensus       300 d~VV~a  305 (487)
                      |+||++
T Consensus       284 d~VI~~  289 (297)
T d2bcgg1         284 PLVIAD  289 (297)
T ss_dssp             SCEEEC
T ss_pred             CEEEEC
Confidence            999987

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.89  E-value=7.8e-23  Score=195.21  Aligned_cols=76  Identities=26%  Similarity=0.446  Sum_probs=71.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKPK  101 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~~  101 (487)
                      +||+|||||++||+||++|++     +|++|+||||++++|||++|+..+|+.+|.|+++++..+..+.++++.+++...
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~-----~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~~~~~~~   75 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRS-----RGTDAVLLESSARLGGAVGTHALAGYLVEQGPNSFLDREPATRALAAALNLEGR   75 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHT-----TTCCEEEECSSSSSBTTCCEEEETTEEEESSCCCEETTCHHHHHHHHHTTCGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----CCCCEEEEecCCCCCceEEEEeeCCEEEecCceEEecCCHHHHHHHHHhccccc
Confidence            589999999999999999999     999999999999999999999999999999999999988888899999887654


Q ss_pred             C
Q 043512          102 D  102 (487)
Q Consensus       102 ~  102 (487)
                      .
T Consensus        76 ~   76 (347)
T d2ivda1          76 I   76 (347)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.81  E-value=9.8e-21  Score=181.08  Aligned_cols=77  Identities=25%  Similarity=0.447  Sum_probs=71.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      .++|+|||||++||+||++|++     +|++|+|||+++++|||++|+..+|+.+|.|+++++..+..+.++++++++..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~-----~G~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~~~~~~~~~~~~~~~   75 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKI-----HGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLRE   75 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TSCEEEEECSSSSSCSSCCEEEETTEEEESSCCCBCCCSHHHHHHHHHTTCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-----CCCCEEEEeCCCCCcCceEEeccCCEEEecCceEEeCCCHHHHHHHHHhCCcc
Confidence            3689999999999999999999     99999999999999999999999999999999999998888889999998765


Q ss_pred             CC
Q 043512          101 KD  102 (487)
Q Consensus       101 ~~  102 (487)
                      ..
T Consensus        76 ~~   77 (373)
T d1seza1          76 KQ   77 (373)
T ss_dssp             GE
T ss_pred             cc
Confidence            43

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.72  E-value=3.7e-17  Score=152.57  Aligned_cols=60  Identities=32%  Similarity=0.528  Sum_probs=56.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCccceeEEEeeCCeEecccceeEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRMATVTISGQTFEAGASILHPKN   86 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~   86 (487)
                      +||+|||||++||+||+.|++     +|+ +|+||||++++|||++|...+|+.+|.|+++++..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~-----~G~~~V~vlE~~~~~GG~~~t~~~~g~~~d~G~~~~~~~~   61 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE-----AGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN   61 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH-----TTCCCEEEECSSSSSBTTSCEEEETTEEEESSCCEEEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHh-----CCCCcEEEEECCCCCCceEEEeccCCEEEecCCeEEeccc
Confidence            589999999999999999999     996 799999999999999999999999999999987654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.68  E-value=8.1e-17  Score=153.16  Aligned_cols=223  Identities=14%  Similarity=0.155  Sum_probs=134.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEe---eCCeEecccceeEecCChhHHHHHHHcC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVT---ISGQTFEAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~---~~g~~~d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      +++|+|||||++||+||+.|++     +|++|+|+|+++++||++.|..   .++..++.|+++++..+..+.+++..+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k-----~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~~~   76 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAE-----KGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHA   76 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTTS
T ss_pred             CCEEEEECCcHHHHHHHHHHHh-----CCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHHhh
Confidence            5789999999999999999999     9999999999999999999885   3567899999999998887777777654


Q ss_pred             CCCCCCCCCCCCceEEEEcCCeeEEEeccCCCCcchhhhhHHHHHHHHHHHHhcCChHHHhHHHHHHHHHHHHhhhhccC
Q 043512           98 LKPKDPPSSEDSTAFGIWDGSKFVFKTISVSSTVPFVQKIVSLANSVLMVLRYGLSLLRMESFTESAVDKFLKYYESFET  177 (487)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (487)
                      -.....   .  ......+|+.+.+..    ..    ..+..+       +..........        .+......   
T Consensus        77 ~~~~~~---~--~~~~~~~g~~~~~P~----~~----~~i~~~-------~~~~~~~~~~~--------~~~~~~~~---  125 (314)
T d2bi7a1          77 EMMPYV---N--RVKATVNGQVFSLPI----NL----HTINQF-------FSKTCSPDEAR--------ALIAEKGD---  125 (314)
T ss_dssp             CEEECC---C--CEEEEETTEEEEESC----CH----HHHHHH-------TTCCCCHHHHH--------HHHHHHSC---
T ss_pred             hhhhhc---c--ccceeecceeeccCc----cH----HHHHHh-------cccccchHHHH--------HHHHHhhh---
Confidence            211111   1  113445665554421    00    000000       00000000001        01100000   


Q ss_pred             CCCCCCHHHHHHHcCChhhhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCC-CcchHHH-HHh----hhc-CCCC--
Q 043512          178 RPVFESVDEMLKWAGLFNLTARSLEEELIDARLSPLLMQELVTIITRINYGQSL-SISGLAG-AVS----LAG-SGGG--  248 (487)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~----~~~-~~~g--  248 (487)
                                     .......++.+++... +++.+.+.++..++...||.++ ++++... .+.    .-. +...  
T Consensus       126 ---------------~~~~~~~n~ee~~~~~-~G~~lye~f~~pYt~K~Wg~~~~~L~~~~~~r~p~r~~~d~~yf~d~~  189 (314)
T d2bi7a1         126 ---------------STIADPQTFEEEALRF-IGKELYEAFFKGYTIKQWGMQPSELPASILKRLPVRFNYDDNYFNHKF  189 (314)
T ss_dssp             ---------------CSCSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHSSCGGGSBGGGCCSCCCCSSSCCCSCCCSE
T ss_pred             ---------------cccCCchhhhHHHHHh-chhhhHHhhcCcchhhhhccCCcccchhhhhccceeccccccccchhh
Confidence                           0001123344444332 2355556677777777777665 4544211 110    001 1112  


Q ss_pred             ceEeecchHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCC
Q 043512          249 LWAVEGGNWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLD  309 (487)
Q Consensus       249 ~~~~~gG~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~  309 (487)
                      ...|++|..++++.|++..+++|.+++.+              ..++...+|+||.|.|+.
T Consensus       190 q~~Pk~Gyt~~~e~mL~~~~i~v~ln~~~--------------~~~~~~~~d~vI~TgpiD  236 (314)
T d2bi7a1         190 QGMPKCGYTQMIKSILNHENIKVDLQREF--------------IVEERTHYDHVFYSGPLD  236 (314)
T ss_dssp             EEEETTHHHHHHHHHHCSTTEEEEESCCC--------------CGGGGGGSSEEEECSCHH
T ss_pred             heeecccHHHHHHHHHhCCCCeeeccccc--------------cccccccceeEEEeccHH
Confidence            24789999999999988777888888774              134567789999998875

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.7e-17  Score=158.32  Aligned_cols=81  Identities=25%  Similarity=0.339  Sum_probs=72.5

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCC-hhHHHHHHHc
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKN-YHTVNFTKLL   96 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~-~~~~~~~~~l   96 (487)
                      ..++.+|||||||++||+||+.|++     +|++|+|||+++++|||++|++.+|+.+|+|++++++.+ ..+.++++++
T Consensus         2 ~~~~~kViVIGaG~aGL~aA~~L~~-----~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~l   76 (449)
T d2dw4a2           2 TKKTGKVIIIGSGVSGLAAARQLQS-----FGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQV   76 (449)
T ss_dssp             SSCCCEEEEECCBHHHHHHHHHHHH-----TTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHh-----CCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHc
Confidence            3456789999999999999999999     999999999999999999999999999999999998655 3577899999


Q ss_pred             CCCCCCC
Q 043512           97 NLKPKDP  103 (487)
Q Consensus        97 gl~~~~~  103 (487)
                      |++....
T Consensus        77 gl~~~~~   83 (449)
T d2dw4a2          77 NMELAKI   83 (449)
T ss_dssp             TCCEEEC
T ss_pred             CCcceec
Confidence            9875443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.55  E-value=2.8e-14  Score=133.41  Aligned_cols=54  Identities=13%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+..+|.   ++.|++|+++++|++|..+++++.|+|++| ++.||.||+|++.+..
T Consensus       150 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHH
T ss_pred             cccccccccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcch
Confidence            34555554   457999999999999999999999999988 7999999999998864

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=1.1e-14  Score=133.74  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             hHHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCC
Q 043512          256 NWQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDE  310 (487)
Q Consensus       256 ~~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~  310 (487)
                      ...+.+.|.+   +.|++|+++++|++|..+++++ .|.+.+|++++||.||+|++-..
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCcc
Confidence            3456666644   4699999999999999998876 68889999999999999999743

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.5e-14  Score=133.74  Aligned_cols=72  Identities=25%  Similarity=0.388  Sum_probs=65.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEe-cccceeEecCChhHHHHHHHcC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTF-EAGASILHPKNYHTVNFTKLLN   97 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~-d~G~~~~~~~~~~~~~~~~~lg   97 (487)
                      ++||+|||||++||+||++|++     .|++|+|+|+++++||+|.|....|..+ +.|+++++..+..+.+++..+.
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~-----~g~~V~iiEk~~~iGG~~~t~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~   73 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKK-----LNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDKYIWDYVNDLV   73 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG-----GTCCEEEECSSSSSSGGGCEEEETTEEEETTSCCCEEESCHHHHHHHHTTS
T ss_pred             CccEEEECCcHHHHHHHHHHHh-----CCCcEEEEECCCCcccceEEeCcCCEEEeecCcEEEEecchHHHHHhhccc
Confidence            4699999999999999999999     9999999999999999999999999865 8899999999888778877654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.46  E-value=2.1e-14  Score=133.76  Aligned_cols=54  Identities=11%  Similarity=0.075  Sum_probs=45.8

Q ss_pred             HHHHHHHH---HhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLI---NRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~---~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+...|+   ++.|++|+.+++|++|..+++.++|+|.+| ++.||.||+|++.+..
T Consensus       151 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~  207 (276)
T d1ryia1         151 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSG  207 (276)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTH
T ss_pred             ccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHH
Confidence            45555554   456999999999999998888899999888 7999999999999864

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.43  E-value=1.9e-13  Score=129.12  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=45.3

Q ss_pred             HHHHHHHHH---hcCCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          257 WQMAAGLIN---RSDVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       257 ~~l~~~l~~---~~G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      ..+..++++   +.|++|+.+++|++|..+++++ +|.|++| +++||+||+|++.|..
T Consensus       148 ~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         148 ARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHH
T ss_pred             hhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHH
Confidence            455555544   5699999999999999999986 6999888 7999999999999854

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.34  E-value=3.4e-12  Score=117.00  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=37.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      +.+||+|||||++||+||+.|++     +|++|+|+||++.+|++
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~-----~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAK-----LGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCHH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCc
Confidence            45899999999999999999999     99999999999988754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.32  E-value=1.2e-11  Score=113.74  Aligned_cols=45  Identities=11%  Similarity=0.055  Sum_probs=40.5

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      .+++++++++|++|...++++.|++.||+++++|.+|.|.+.+..
T Consensus       109 ~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~  153 (265)
T d2voua1         109 GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV  153 (265)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred             ccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEecccccccc
Confidence            367899999999999999999999999999999999999998753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.30  E-value=4e-12  Score=121.68  Aligned_cols=54  Identities=6%  Similarity=-0.077  Sum_probs=42.0

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCc------eEecCEEEEccCCCC
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGN------SYTCQITVVATPLDE  310 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~------~~~ad~VV~a~~~~~  310 (487)
                      .+..+..++.++..|++|++|++|+.+++++.|++.+++      ...||+||+|++...
T Consensus       116 ~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         116 QEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            344445556677889999999999999999888775432      456999999999764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.29  E-value=3e-12  Score=119.89  Aligned_cols=41  Identities=29%  Similarity=0.443  Sum_probs=38.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      +...||||||||++||++|+.|++     .|++|+||||++.+||.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~-----~G~~v~i~Ek~~~iGGt   45 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRE-----LGRSVHVIETAGDVGGV   45 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh-----CCCCEEEEEcCCCcccc
Confidence            356799999999999999999999     99999999999998874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.20  E-value=8.6e-11  Score=110.68  Aligned_cols=42  Identities=26%  Similarity=0.444  Sum_probs=38.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+++||+|||||++||+||+.|++     +|.+|+|+||.+..||.+
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~-----~G~~V~lvEK~~~~gG~s   55 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD-----SGAKVILIEKEPVIGGNA   55 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSSSSCTTG
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-----CCCcEEEEecCCCCCCcc
Confidence            457899999999999999999999     999999999998887754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=3.6e-10  Score=110.40  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=76.3

Q ss_pred             hhcccHHHHHHHcCCCHHHHHHHHHHHHHhhcCCCCCcchHHHHHhhh----cCCCC-ceEeecchHHHHHHHHHhc---
Q 043512          196 LTARSLEEELIDARLSPLLMQELVTIITRINYGQSLSISGLAGAVSLA----GSGGG-LWAVEGGNWQMAAGLINRS---  267 (487)
Q Consensus       196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~g-~~~~~gG~~~l~~~l~~~~---  267 (487)
                      ....++.++++..++.+..++.+..++.-..........++..+..+.    .++.. ..+|..|.+.|++++.+.+   
T Consensus       310 ~~~~~~~e~l~~~~l~~~~~~~i~~aial~~~~~~~~~~~l~ri~~yl~Slg~yG~spflyp~YG~gEipQ~FcR~~AV~  389 (491)
T d1vg0a1         310 YEGTTFSEYLKTQKLTPNLQYFVLHSIAMTSETTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVF  389 (491)
T ss_dssp             TTTSBHHHHHTTSSSCHHHHHHHHHHTTC--CCSCBHHHHHHHHHHHHHHTTSSSSSSEEEETTCTTHHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHHHcCCChHHHHHHHhheeccCCCCccHHHHHHHHHHHHHHHHhhCCCCeEeecCCcchHHHHHHHHHHhc
Confidence            346889999999999888775543322211111111123443332222    23323 4489999999999998853   


Q ss_pred             CCeEEeCCceEEEEEe--CCEE-EEEEccCceEecCEEEEccCC
Q 043512          268 DVALHLHEEIESISYL--REYY-ELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~--~~~v-~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      |+.+.+|++|.+|..+  ++++ +|.+.+|+++.++.||+....
T Consensus       390 Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy  433 (491)
T d1vg0a1         390 GGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY  433 (491)
T ss_dssp             TCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGG
T ss_pred             CcEEEcCCccceEEEecCCCeEEEEEccCCcEEecCeEEECHHh
Confidence            9999999999999985  3445 778889999999999987643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.08  E-value=8.1e-10  Score=104.57  Aligned_cols=43  Identities=28%  Similarity=0.474  Sum_probs=38.9

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+..||+|||||++||+||+.|++     +|++|+|+||.+..||.+
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~-----~G~~V~llEk~~~~gG~s   62 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARD-----AGAKVILLEKEPIPGGNT   62 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHT-----TTCCEEEECSSSSSCTTG
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCCcc
Confidence            4456899999999999999999999     999999999999888754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.02  E-value=2.3e-09  Score=101.08  Aligned_cols=42  Identities=14%  Similarity=0.362  Sum_probs=38.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .++.||+|||||++||+||+.|++     +|.+|+|+||.+..||.+
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~-----~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKK-----AGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH-----HTCCEEEECSSSSSCTTG
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-----CCCcEEEEeCCCCCCCch
Confidence            346899999999999999999999     999999999998877753

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.6e-10  Score=97.38  Aligned_cols=42  Identities=19%  Similarity=0.414  Sum_probs=38.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      ....++|+|||||++||+||+.|++     +|++|+|||+.+.+||.
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~-----~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAA-----RGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHT-----TTCEEEEEESSSSSCTT
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHh-----hccceEEEeccCccCce
Confidence            4456899999999999999999999     99999999999999983

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.92  E-value=3.5e-09  Score=97.65  Aligned_cols=44  Identities=14%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccC----ceEecCEEEEccCCCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKG----NSYTCQITVVATPLDE  310 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G----~~~~ad~VV~a~~~~~  310 (487)
                      .+.++.++++|+.+..+++++.|.+.+|    +++.+|.||.|-+.+.
T Consensus       119 ~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S  166 (288)
T d3c96a1         119 GQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHS  166 (288)
T ss_dssp             CTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTC
T ss_pred             cCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccc
Confidence            4788999999999999999998887766    4789999999988764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.90  E-value=7.7e-09  Score=98.15  Aligned_cols=38  Identities=18%  Similarity=0.115  Sum_probs=34.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      .+||+|||||++||+||+.|++     +|.+|+|+||....||
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~-----~G~~V~liEK~~~~~g   42 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQ-----KGLSTIVLSLIPVKRS   42 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHT-----TTCCEEEECSSCGGGS
T ss_pred             ecCEEEECcCHHHHHHHHHHHH-----CCCCEEEEecCCCCCC
Confidence            4799999999999999999999     9999999999875554

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.1e-08  Score=80.78  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=38.0

Q ss_pred             HHhcCCeEEeCCceEEEEEeCC-EEEEEEccCceEecCEEEEccC
Q 043512          264 INRSDVALHLHEEIESISYLRE-YYELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~-~v~V~~~~G~~~~ad~VV~a~~  307 (487)
                      +++.|+++++++.|++|..+++ .+.|++++|+++.+|.||+|++
T Consensus        72 l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          72 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            3456999999999999998754 5789999999999999999975

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.84  E-value=1.6e-08  Score=82.03  Aligned_cols=45  Identities=7%  Similarity=0.141  Sum_probs=37.5

Q ss_pred             HHHhcCCeEEeCCceEEEEEeC--CEE-EEEEccCceEecCEEEEccC
Q 043512          263 LINRSDVALHLHEEIESISYLR--EYY-ELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~--~~v-~V~~~~G~~~~ad~VV~a~~  307 (487)
                      .+++.|+++++|++|++|....  +.+ .|.+++|+++.||.||+|++
T Consensus        86 ~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          86 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            4456799999999999998754  334 68899999999999999975

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.80  E-value=5.3e-09  Score=97.19  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      |+.||+|||||++||++|..|++     .|++|+|+||++..
T Consensus         1 mk~~V~IvGaGp~Gl~~A~~L~~-----~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           1 MKTQVAIIGAGPSGLLLGQLLHK-----AGIDNVILERQTPD   37 (292)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHH-----HTCCEEEECSSCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-----CCCCEEEEeCCCCC
Confidence            35689999999999999999999     99999999998753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.76  E-value=2.3e-09  Score=95.41  Aligned_cols=41  Identities=34%  Similarity=0.449  Sum_probs=38.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +.+||+|||||++|++||.++++     .|.+|+|+|+++.+||.+
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~-----~G~kV~vie~~~~~GG~~   42 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ-----LGFKTTCIEKRGALGGTC   42 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSSSCCSH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-----CCCcEEEEEecCCCCCee
Confidence            57999999999999999999999     999999999999999855

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.4e-08  Score=93.64  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=35.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      +.||+|||||++||+||..+++..   .|.+|+|+||....||.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~---~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQAN---PNAKIALISKVYPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHC---TTCCEEEEESSCGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhC---CCCEEEEEECCCCCCCc
Confidence            479999999999999999999832   47899999998766654

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=2.7e-08  Score=87.55  Aligned_cols=43  Identities=9%  Similarity=-0.046  Sum_probs=35.5

Q ss_pred             CCeEEeCCceEEEEEeCCEE-EEEEccCceEecCEEEEccCCCCC
Q 043512          268 DVALHLHEEIESISYLREYY-ELNSTKGNSYTCQITVVATPLDEL  311 (487)
Q Consensus       268 G~~i~~~~~V~~I~~~~~~v-~V~~~~G~~~~ad~VV~a~~~~~~  311 (487)
                      +.+|+ ..+|+++..+++++ +|+|.+|..+.|+.||+|++....
T Consensus        82 nL~i~-q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          82 PLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             TEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             CHHHH-hccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            44554 56788998888886 899999999999999999998543

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=1.5e-09  Score=97.48  Aligned_cols=43  Identities=28%  Similarity=0.315  Sum_probs=39.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .+++||+|||||++|++||.+|++     .|.+|+|+|+++.+||.+.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~-----~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQ-----LGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSHHHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHH-----CCCcEEEEEecCCcceEeE
Confidence            357899999999999999999999     9999999999999998663

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.72  E-value=8.3e-08  Score=75.99  Aligned_cols=44  Identities=9%  Similarity=0.129  Sum_probs=36.9

Q ss_pred             HHhcCCeEEeCCceEEEEEeCCEEEEEEccC---ceEecCEEEEccC
Q 043512          264 INRSDVALHLHEEIESISYLREYYELNSTKG---NSYTCQITVVATP  307 (487)
Q Consensus       264 ~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G---~~~~ad~VV~a~~  307 (487)
                      +++.|++|+++++|++|+.+++++.|++.++   +++.||.||+|++
T Consensus        73 l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          73 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             HHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            3466899999999999999998887776544   5799999999975

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.72  E-value=1.1e-07  Score=75.14  Aligned_cols=38  Identities=18%  Similarity=0.407  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      ..+++|+|||||+.|+-+|..|++     .|.+|+|+|+.+++
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~-----~G~~Vtlve~~~~i   57 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYAN-----FGTKVTILEGAGEI   57 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSSS
T ss_pred             hcCCeEEEECCCccceeeeeeecc-----cccEEEEEEeccee
Confidence            345789999999999999999999     99999999998764

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.70  E-value=5.7e-09  Score=95.00  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...+||||||||++||+||+.|++     +|++|+|+||...
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~-----~G~~V~vier~~~   40 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR-----KGYSVHILARDLP   40 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSCT
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH-----CCCCEEEEeCCCC
Confidence            345789999999999999999999     9999999999753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=3.2e-09  Score=98.09  Aligned_cols=43  Identities=23%  Similarity=0.309  Sum_probs=38.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++||+||++|++.    .|++|+|+|+++.+||.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~----~G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKN----PNVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS----TTSCEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc----cCCeEEEEecCCCCCCcee
Confidence            457999999999999999999871    4999999999999998664

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.67  E-value=1e-08  Score=91.93  Aligned_cols=45  Identities=22%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      .....++|+|||||++||+||..|++     .|++|+|+|+++.+||...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~-----~G~~v~l~E~~~~~GG~~~   89 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLME-----SGYTVHLTDTAEKIGGHLN   89 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSSTTTTHH
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHH-----hccceeeEeeccccCCccc
Confidence            34567899999999999999999999     9999999999999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.67  E-value=5.9e-09  Score=90.70  Aligned_cols=41  Identities=29%  Similarity=0.477  Sum_probs=37.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~GGr~   65 (487)
                      ..++|+|||||++||+||..|++     .|+ +|+||||++.+||..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~-----~G~~~V~v~E~~~~~gg~~   44 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLAR-----LGYSDITIFEKQEYVGGLS   44 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH-----TTCCCEEEEESSSSCSTHH
T ss_pred             CCCEEEEECChHHHHHHHHHHHH-----CCCCeEEEEEecCcccchh
Confidence            46789999999999999999999     998 599999999998854

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.66  E-value=1.1e-07  Score=75.53  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||||+.|+-+|..|++     .|.+|+|+|++++
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~-----~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATART-----AGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhc-----ccceEEEEeeccc
Confidence            35789999999999999999999     9999999999865

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=3.6e-09  Score=95.15  Aligned_cols=39  Identities=23%  Similarity=0.089  Sum_probs=36.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC-------CeEEEEecCCCcccee
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-------PRILMFERNGVVGGRM   65 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-------~~V~VlE~~~~~GGr~   65 (487)
                      ++|+|||||+|||+||++|++     +|       ++|+||||.+.+||..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~-----~G~~~~~~~~~V~v~E~~~~~GG~~   48 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLK-----AADTTEDLDMAVDMLEMLPTPWGLV   48 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-----HHHHSTTCCEEEEEEESSSSCSTHH
T ss_pred             cEEEEECcCHHHHHHHHHHHH-----cCCccccCCCceEEEecCCCCCCee
Confidence            589999999999999999999     66       6899999999999964

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.65  E-value=9.2e-09  Score=92.05  Aligned_cols=41  Identities=27%  Similarity=0.461  Sum_probs=36.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ++|+|||||+|||+||..|++..   .|++|+|||+.+.+||.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~---~~~~V~v~e~~~~~gG~~   42 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHH---SRAHVDIYEKQLVPFGLV   42 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC---SSCEEEEECSSSSSCTHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcC---CCCeEEEEeCCCCCCcee
Confidence            58999999999999999998732   478999999999999854

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.65  E-value=1.1e-07  Score=75.75  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=33.9

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +..++|+|||||+.|+-+|..|++     .|.+|+|+|+.++
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~-----~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAK-----AGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhc-----cceEEEEEEecCc
Confidence            345789999999999999999999     9999999999865

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.64  E-value=2.4e-07  Score=72.98  Aligned_cols=44  Identities=7%  Similarity=0.131  Sum_probs=37.6

Q ss_pred             HHHhcCCeEEeCCceEEEEEeC-CEEEEEEccCceEecCEEEEcc
Q 043512          263 LINRSDVALHLHEEIESISYLR-EYYELNSTKGNSYTCQITVVAT  306 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~ad~VV~a~  306 (487)
                      .+++.|++|+++++|++|+..+ +.+.|++++|++++||.||+|.
T Consensus        73 ~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          73 QLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            3456799999999999998765 4578999999999999999984

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.64  E-value=6.5e-09  Score=93.05  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=37.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+||+|||||++||+||.+|++     .|++|+|+|+...+||.+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~-----~G~~V~viE~~~~~GG~~   45 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAAD-----EGLKVAIVERYKTLGGVC   45 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSCSSHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeccCCCCCee
Confidence            35899999999999999999999     999999999998888844

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.63  E-value=1.8e-07  Score=73.76  Aligned_cols=45  Identities=9%  Similarity=0.137  Sum_probs=38.4

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCE-EEEEEccCceEecCEEEEccC
Q 043512          263 LINRSDVALHLHEEIESISYLREY-YELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~-v~V~~~~G~~~~ad~VV~a~~  307 (487)
                      .+++.|++|++++.|++|..++++ ..|.+.+|+++.||.||+|++
T Consensus        71 ~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          71 QLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             HHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            345679999999999999986554 578899999999999999975

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.8e-07  Score=75.98  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=41.1

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccC
Q 043512          263 LINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATP  307 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~  307 (487)
                      .+++.|+++++|+.|++|..+++++.|++.+|+++.||.||+|++
T Consensus        92 ~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             HHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            345679999999999999999999999999999999999999986

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.63  E-value=1.8e-07  Score=73.67  Aligned_cols=42  Identities=7%  Similarity=0.268  Sum_probs=35.1

Q ss_pred             HhcCCeEEeCCceEEEEEeC-CEEEEEEccCceEe-cCEEEEcc
Q 043512          265 NRSDVALHLHEEIESISYLR-EYYELNSTKGNSYT-CQITVVAT  306 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~-~~v~V~~~~G~~~~-ad~VV~a~  306 (487)
                      ++.|++++++++|++|+..+ +.+.|++.+|+++. +|.||+|.
T Consensus        74 ~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          74 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            45699999999999998765 45789999998875 69999984

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.61  E-value=9.5e-09  Score=99.14  Aligned_cols=49  Identities=29%  Similarity=0.483  Sum_probs=39.3

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcC-CCCCCeEEEEecCCCcccee
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSS-KNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~-~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...+.+||||||||+|||+||+.|+++.. ..+|++|+||||+..+|...
T Consensus        28 ~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~   77 (380)
T d2gmha1          28 RFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   77 (380)
T ss_dssp             CCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCc
Confidence            34456899999999999999999996210 00799999999999988654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=1.5e-08  Score=90.22  Aligned_cols=40  Identities=28%  Similarity=0.271  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      ++++||+|||||+|||+||.+|++     .|++|+|+|+....|+
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar-----~G~~V~viE~~~~~~~   40 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQ-----LGLKTALIEKYKGKEG   40 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHH-----HTCCEEEEECCBCTTS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEecccCCCc
Confidence            468999999999999999999999     9999999999765554

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=1.5e-08  Score=89.80  Aligned_cols=39  Identities=21%  Similarity=0.321  Sum_probs=35.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ++||+|||||++|++||..+++     .|.+|+|+|++ .+||.|
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~-----~G~kV~iiE~~-~~GGtc   40 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAM-----YGQKCALIEAK-ELGGTC   40 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-----TTCCEEEEESS-CTTHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-----CCCEEEEEecc-CcCCeE
Confidence            5899999999999999999999     99999999995 588854

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=5.5e-07  Score=71.40  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++++|||||+.|+-+|..|++     .|.+|+|+|++++
T Consensus        22 ~p~~~vIiG~G~ig~E~A~~l~~-----lG~~Vtii~~~~~   57 (122)
T d1v59a2          22 IPKRLTIIGGGIIGLEMGSVYSR-----LGSKVTVVEFQPQ   57 (122)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCCeEEEECCCchHHHHHHHHHh-----hCcceeEEEeccc
Confidence            45789999999999999999999     9999999999876

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.49  E-value=2.9e-08  Score=88.07  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .++||||||||++|++||.++++     .|.+|+|+|+. .+||.+
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar-----~G~kV~vIEk~-~~GG~~   41 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQ-----LGQKVTIVEKG-NLGGVC   41 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-CTTHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHH-----CCCEEEEEecC-CCCcce
Confidence            46899999999999999999999     99999999996 467754

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.43  E-value=4.2e-08  Score=91.97  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=38.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeE
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMA   66 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~   66 (487)
                      ..+||+|||||++||+||+.|++..   .|++|+|+|+++.+||.++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNR---PDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHC---TTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhC---CCCeEEEEEcCCCCcceeE
Confidence            3579999999999999999999732   5999999999999999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.41  E-value=4.9e-08  Score=86.53  Aligned_cols=42  Identities=29%  Similarity=0.331  Sum_probs=37.4

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ...++|++|||||++|++||..+++     .|.+|+|+|++ .+||.|
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~-----~G~~V~liE~~-~~GG~c   43 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQ-----LGIPTVLVEGQ-ALGGTC   43 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHH-----HTCCEEEECSS-CTTHHH
T ss_pred             CccccCEEEECCCHHHHHHHHHHHH-----CCCcEEEEecC-CCCCcc
Confidence            3457899999999999999999999     99999999996 578755

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=7.7e-08  Score=82.54  Aligned_cols=38  Identities=26%  Similarity=0.393  Sum_probs=34.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+||+|||||++|++||.++++     .|.+|+|+|++  +||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar-----~G~~v~iie~~--~gg~~   38 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR-----KGIRTGLMGER--FGGQI   38 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-----TTCCEEEECSS--TTGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-----cCCeEEEEEEe--cCCcc
Confidence            4799999999999999999999     99999999974  66654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.39  E-value=8.9e-08  Score=91.85  Aligned_cols=38  Identities=26%  Similarity=0.283  Sum_probs=34.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      +.++||||||||++|+++|.+|++     +|++|+|||+....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~-----~G~kVlvLEaG~~~   39 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVG-----AGYKVAMFDIGEID   39 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhh-----CCCeEEEEecCCCC
Confidence            467899999999999999999999     99999999996543

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.38  E-value=1.6e-06  Score=68.79  Aligned_cols=45  Identities=4%  Similarity=-0.080  Sum_probs=36.2

Q ss_pred             HHHhcCCeEEeCCceEEEEEeCCEEEEEEcc--C--ceEecCEEEEccC
Q 043512          263 LINRSDVALHLHEEIESISYLREYYELNSTK--G--NSYTCQITVVATP  307 (487)
Q Consensus       263 l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~--G--~~~~ad~VV~a~~  307 (487)
                      .+++.|++++++++|++|+.+++++.|++.+  |  ++++||.|++|++
T Consensus        76 ~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          76 QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            3446688999999999999998887666543  3  4799999999986

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=8.8e-08  Score=84.79  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=35.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ++||||||||++|++||.++++     .|.+|+|+|+. .+||.|
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar-----~G~kV~vIEk~-~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE-----LGARAAVVESH-KLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-CTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-----CCCEEEEEecc-CCCCcc
Confidence            5899999999999999999999     99999999995 566633

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.37  E-value=9.3e-08  Score=86.99  Aligned_cols=38  Identities=24%  Similarity=0.483  Sum_probs=35.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +||+|||||++|++||.++++     .|.+|+|+|+. .+||.|
T Consensus         2 yDviVIG~G~aG~~aA~~aa~-----~G~~V~liE~~-~~GGtc   39 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR-----HNAKVALVEKS-RLGGTC   39 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS-STTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHH-----CCCeEEEEecC-CCCCeE
Confidence            799999999999999999999     99999999995 688865

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=9.7e-08  Score=85.41  Aligned_cols=37  Identities=19%  Similarity=0.340  Sum_probs=33.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      .+||+|||||++|++||.++++     .|++|+|+|+....|
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~-----~G~kV~viE~~~~~~   39 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK-----FDKKVMVLDFVTPTP   39 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG-----GCCCEEEECCCCCCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeccCCCC
Confidence            5899999999999999999999     999999999976533

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.34  E-value=1.7e-07  Score=85.36  Aligned_cols=44  Identities=27%  Similarity=0.379  Sum_probs=40.2

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      ..+..+||||||||++|+.||..|++     .|.+|+|+|+.+.+||.|
T Consensus        38 ~~~k~yDvvVIGgG~aG~~aA~~~a~-----~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          38 NDPREYDAIFIGGGAAGRFGSAYLRA-----MGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             TCCSCBSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESSSSSSCHH
T ss_pred             CCCccCCEEEECCCHHHHHHHHHHHH-----CCCeEEEEeccCcccccc
Confidence            34567899999999999999999999     999999999999999866

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.2e-07  Score=88.45  Aligned_cols=40  Identities=35%  Similarity=0.501  Sum_probs=34.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      +++||||||||++||+||..+++     .| +|+|+||.+..||.+
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~-----~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLAD-----QH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-----TS-CEEEECSSCTTC---
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-----CC-CEEEEECCCCCCCch
Confidence            46899999999999999999988     88 999999998777643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1e-07  Score=82.36  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...+||+|||||++||+||.+|++     .|.+|+|+|+.+.
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar-----~g~~v~iie~~~~   39 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAAR-----ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHT-----TTCCCEEECCSST
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-----cCCceEEEEeecc
Confidence            345799999999999999999999     9999999998764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=1.7e-07  Score=88.47  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=36.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      .++||+|||||++||+||..+++     +|.+|+|+||.+..||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~-----~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQ-----SGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHH-----TTCCCEEECSSCGGGSG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-----cCCeEEEEeCCCCCCCc
Confidence            46899999999999999999999     99999999998876653

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.23  E-value=2.6e-07  Score=87.70  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+||+|||||++||++|..|++..-..+|++|+||||++.+
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            48999999999999999999731000089999999998764

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.17  E-value=5.6e-07  Score=80.24  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +..|||+|||||+||++||.++++     .|. +|+|+|+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~-----~g~k~V~iie~~~   37 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAAT-----LYKKRVAVIDVQM   37 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHH-----TSCCCEEEEESCS
T ss_pred             CCccCEEEECCCHHHHHHHHHHHH-----cCCCEEEEEEeec
Confidence            357999999999999999999999     875 689999853

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.14  E-value=7e-07  Score=85.47  Aligned_cols=36  Identities=28%  Similarity=0.230  Sum_probs=33.3

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .....||||||||++|+.+|++|++     +|++|+|||+.
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLae-----aG~~VlvLEaG   39 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQ-----AGIPTQIVEMG   39 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence            4456899999999999999999999     99999999985

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.14  E-value=6.5e-07  Score=85.14  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=35.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGG   63 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GG   63 (487)
                      .+.||+|||||++||+||+.|++...+ +|.+|+|+||....||
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~-~G~~V~vieK~~~~gg   62 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAVERS   62 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCTTTC
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHh-CcCEEEEEeCCCCCCC
Confidence            358999999999999999999752110 6999999999876554

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.12  E-value=4.8e-07  Score=81.06  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~~   61 (487)
                      ..+||||||||+||++||.++++     .|. +|+|+|+....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~-----~g~k~V~vie~~~~~   39 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAAS-----LHKKRVAVIDLQKHH   39 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-----HHCCCEEEEESCSSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHH-----cCCCEEEEEEEeccC
Confidence            57999999999999999999999     774 69999997643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.10  E-value=9.4e-07  Score=84.42  Aligned_cols=32  Identities=28%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .||||||||++|+.+|++|++     +|++|+|||+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLae-----aG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGE-----AGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHH-----CcCeEEEEecC
Confidence            489999999999999999999     99999999995

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.08  E-value=8.9e-07  Score=76.35  Aligned_cols=35  Identities=26%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+||+|||||++|++||.+|++     .|.+|+|+|+...
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar-----~g~~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAAR-----AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-----TTCCCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHH-----cCCcEEEEEeecc
Confidence            4799999999999999999999     9999999998654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.03  E-value=2e-07  Score=83.47  Aligned_cols=33  Identities=24%  Similarity=0.222  Sum_probs=29.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||||++||++|+.|++     +|++|+|+|+.+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~-----~G~~v~v~e~~~   33 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHE-----RYHSVLQPLDVK   33 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HHTTTSSSCEEE
T ss_pred             CEEEEECchHHHHHHHHHHHH-----CCCCceEEeeee
Confidence            479999999999999999999     999888887743

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=1.6e-06  Score=77.16  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcccee
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRM   65 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~   65 (487)
                      .+|+|||||++|++||.+++++..  ++.+|+|+|+. .+||.|
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~--~~~~V~liEk~-~~GG~c   42 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHP--ETTQVTVIDCD-GIGGAA   42 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCT--TTEEEEEEESS-CTTHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCC--CCCEEEEEecC-CCCcee
Confidence            479999999999999999887432  56899999995 688754

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.93  E-value=2.7e-06  Score=80.99  Aligned_cols=34  Identities=32%  Similarity=0.499  Sum_probs=32.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+||||||.+|+.+|.+|++     +|++|+|||+..
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae-----~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE-----AGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-----TTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-----CCCeEEEEEccC
Confidence            5899999999999999999999     999999999963

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.85  E-value=3.6e-06  Score=80.99  Aligned_cols=35  Identities=23%  Similarity=0.314  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      .++|+||||||.+|+..|.+|++     .| ++|+|||+..
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae-----~~~~~VLlLEaG~   58 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTE-----NPKIKVLVIEKGF   58 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-----STTCCEEEEESSC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHH-----CCCCeEEEEcCCC
Confidence            46999999999999999999999     87 7999999975

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.83  E-value=9.5e-06  Score=63.27  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCc
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVV   61 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~   61 (487)
                      .+.+++|||||+.|+-+|..|++     .|.+|+|+|+.+++
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~-----~g~~Vtlve~~~~i   56 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRK-----LGAQVSVVEARERI   56 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhh-----cccceEEEeeeccc
Confidence            34789999999999999999999     99999999998763

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.81  E-value=3.3e-06  Score=81.15  Aligned_cols=37  Identities=22%  Similarity=0.246  Sum_probs=32.7

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ..+++|+||||||.+|+..|.+|++     .+ ++|+|||+..
T Consensus        14 ~~~tyD~IIVGsG~aG~vlA~rLse-----~~~~~VLvLEaG~   51 (385)
T d1cf3a1          14 SGRTVDYIIAGGGLTGLTTAARLTE-----NPNISVLVIESGS   51 (385)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHTT-----STTCCEEEEESSC
T ss_pred             cCCeEEEEEECcCHHHHHHHHHHHH-----CCCCeEEEECCCC
Confidence            3456899999999999999999998     66 8999999964

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.77  E-value=3.8e-06  Score=79.62  Aligned_cols=37  Identities=27%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             CCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           17 TFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        17 ~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....++|+||||||.||+.+|.+|++     + ++|+|||+.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae-----~-~kVLvLEaG~   58 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSE-----K-YKVLVLERGS   58 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTT-----T-SCEEEECSSB
T ss_pred             cccCCccEEEECccHHHHHHHHHhcC-----C-CCEEEEecCC
Confidence            34456899999999999999999998     7 8999999975

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.71  E-value=1.5e-05  Score=62.78  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+|+|||||+.|+-+|..|++     .|.+|+|+|++++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~-----~g~~Vtlv~~~~~   66 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE-----AGYHVKLIHRGAM   66 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-----TTCEEEEECSSSC
T ss_pred             CcEEEECCcHHHHHHHHHhhc-----ccceEEEEecccc
Confidence            679999999999999999999     9999999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.70  E-value=1.6e-05  Score=67.13  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||||.+|+.+|..|+++.   ...+|+|+|+++.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~---~~~~Vtlie~~~~   38 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLAD---PSIEVTLIEPNTD   38 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHC---TTSEEEEECSCSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcC---CCCcEEEEECCCc
Confidence            478999999999999999999932   3369999999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.6e-05  Score=61.70  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||||..|+-+|..|++     .|.+|+|+|++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~-----~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSA-----LGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhc-----CCcEEEEEeeccc
Confidence            4789999999999999999999     9999999999876

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=5.2e-05  Score=56.39  Aligned_cols=36  Identities=25%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||.|.+|+++|.+|++     .|.+|+++|.+..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~-----~g~~v~~~D~~~~   39 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLA-----RGVTPRVMDTRMT   39 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-----TTCCCEEEESSSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHH-----CCCEEEEeeCCcC
Confidence            35689999999999999999999     9999999998654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.49  E-value=4e-05  Score=60.35  Aligned_cols=36  Identities=14%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ...+++|||||+.|+-.|..|++     .|.+|+|+|++++
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~-----~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGR-----IGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHH-----HTCEEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHh-----cCCeEEEEEEccc
Confidence            35789999999999999999999     9999999999876

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.49  E-value=4.9e-05  Score=65.29  Aligned_cols=45  Identities=11%  Similarity=0.121  Sum_probs=35.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEE-ccCc--eEecCEEEEccCCC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNS-TKGN--SYTCQITVVATPLD  309 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~-~~G~--~~~ad~VV~a~~~~  309 (487)
                      ++.|++++++++|++|+.+++.+.++. .+|+  .+.+|.+|++++..
T Consensus        67 ~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~  114 (198)
T d1nhpa1          67 ESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAV  114 (198)
T ss_dssp             HHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecce
Confidence            356889999999999998888877653 4443  57899999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.41  E-value=0.00012  Score=57.39  Aligned_cols=34  Identities=15%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ...+++|||||+.|+-.|..|++     .|.+|+|++++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~-----lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAG-----IGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred             CCCeEEEECCCccHHHHHHHHhh-----cCCeEEEEEec
Confidence            34689999999999999999999     99999999975

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.34  E-value=0.00012  Score=57.22  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=32.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .++|+|||||..|+-.|..|++     .|.+|+++|+.++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~-----~g~~vt~i~~~~~   56 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNA-----TGRRTVMLVRTEP   56 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----cchhheEeeccch
Confidence            5789999999999999999999     9999999999865

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.27  E-value=0.00011  Score=61.63  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=32.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+.|+|||||..|..+|..|++     .|++|+|++|+..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~-----~g~~V~v~dr~~~   36 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTD-----SGIKVTVACRTLE   36 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHT-----TTCEEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-----CCCEEEEEECChH
Confidence            5789999999999999999999     9999999999754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.17  E-value=0.00017  Score=60.79  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +++|+|||||..|++.|..|++     +|++|+++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~-----~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLAL-----KGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            3689999999999999999999     999999999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.17  E-value=0.00014  Score=61.19  Aligned_cols=35  Identities=23%  Similarity=0.199  Sum_probs=32.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..||+|||||.+|+-+|..|++     .|.+|+|++..++
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~-----~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRA-----SGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-----cCCceEEEEecCc
Confidence            4689999999999999999999     9999999988764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.12  E-value=0.0001  Score=62.29  Aligned_cols=40  Identities=18%  Similarity=0.151  Sum_probs=33.5

Q ss_pred             cCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          267 SDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       267 ~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      .+++++++++|++|..+..  .+.+.+|+++.+|.||+|++.
T Consensus        68 ~~i~~~~~~~v~~i~~~~~--~~~~~~g~~~~~D~vi~a~G~  107 (183)
T d1d7ya1          68 PEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGA  107 (183)
T ss_dssp             TTCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCE
T ss_pred             CCeEEEEeccccccccccc--eeEecCCcEeeeeeEEEEEEE
Confidence            4678999999999976554  456789999999999999885

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.0004  Score=57.35  Aligned_cols=36  Identities=14%  Similarity=0.052  Sum_probs=32.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ++|+|||+|..|...|..|++     .|++|+++.|.....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~-----~G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCK-----QGHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHH-----CCCceEEEEcCHHHh
Confidence            579999999999999999999     999999999977543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.04  E-value=0.00024  Score=58.80  Aligned_cols=32  Identities=34%  Similarity=0.554  Sum_probs=28.4

Q ss_pred             cEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           23 TVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        23 dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +|+|||||++|+.+|..|++      +.+|+|+|+.+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~------~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ------TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT------TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc------CCCEEEEecccc
Confidence            69999999999999999964      679999998764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00041  Score=60.05  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=35.4

Q ss_pred             hcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          266 RSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       266 ~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      +.|++++++++|++|+.+++  +|++++|+++.||.||+|++.
T Consensus        95 ~~gI~~~~g~~V~~id~~~~--~V~l~dG~~i~~d~lViAtG~  135 (213)
T d1m6ia1          95 NGGVAVLTGKKVVQLDVRDN--MVKLNDGSQITYEKCLIATGG  135 (213)
T ss_dssp             TCEEEEEETCCEEEEEGGGT--EEEETTSCEEEEEEEEECCCE
T ss_pred             HCCeEEEeCCEEEEeeccCc--eeeeccceeeccceEEEeeee
Confidence            56889999999999976655  467889999999999999885

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00086  Score=56.82  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=31.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||||..|..-|+.+++     +|++|+++|++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~-----~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA-----TGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHh-----CCCcEEEEECCh
Confidence            689999999999999999999     999999999875

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.64  E-value=0.0013  Score=53.51  Aligned_cols=37  Identities=16%  Similarity=0.095  Sum_probs=31.9

Q ss_pred             CCcEEEE--CCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCII--GSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvII--GaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      ...|+||  |||..|+.+|-.|++     .|.+|+|+|+.++++
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~-----~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLAT-----AGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHH-----TTCEEEEEESSCTTT
T ss_pred             CCceEEEecCCChHHHHHHHHHHH-----cCCeEEEEecCCccc
Confidence            4456666  999999999999999     999999999987643

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.48  E-value=0.0016  Score=52.94  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=32.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...+|+|||+|.+|+.|+..+.+     -|.+|+++|.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~-----lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG-----LGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhh-----CCCEEEEEeCcH
Confidence            45789999999999999999999     999999999863

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.46  E-value=0.00097  Score=56.19  Aligned_cols=34  Identities=26%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      -++|+|||||..|..-|..++.     +|++|+++|.+.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~-----~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSAS-----KGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHH-----TTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHh-----CCCeEEEEECCH
Confidence            4679999999999999999999     999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.36  E-value=0.0019  Score=50.97  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=45.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCccceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVGGRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      ++|+|+|+|--|...|..|.+     .|++|+|+|++...--++.        -+.|..++++.. .-.++++..++..
T Consensus         1 M~IvI~G~G~~G~~la~~L~~-----~g~~v~vid~d~~~~~~~~--------~~~~~~vi~Gd~-~~~~~l~~~~i~~   65 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSE-----KGHDIVLIDIDKDICKKAS--------AEIDALVINGDC-TKIKTLEDAGIED   65 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCHHHHHHHH--------HHCSSEEEESCT-TSHHHHHHTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----CCCCcceecCChhhhhhhh--------hhhhhhhccCcc-cchhhhhhcChhh
Confidence            579999999999999999999     9999999999753111110        123445555422 2237788887754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.30  E-value=0.0023  Score=52.80  Aligned_cols=34  Identities=12%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+|+|||||.+|+.||....+     -|.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~-----lGA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKR-----LGAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHH-----cCCEEEEEeccH
Confidence            5689999999999999999999     999999999864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.26  E-value=0.0018  Score=55.28  Aligned_cols=33  Identities=18%  Similarity=0.229  Sum_probs=30.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||.|..|++.|..|++     +|++|+.+|.+.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~-----~g~~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSA-----RGHEVIGVDVSS   33 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEECCCHhHHHHHHHHHh-----CCCcEEEEeCCH
Confidence            569999999999999999999     999999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.08  E-value=0.0028  Score=51.99  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|..|.+.|..|++     +|++|++++++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~-----~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRR-----RGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHH-----CCCEEEEEECCc
Confidence            479999999999999999999     999999999863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.96  E-value=0.003  Score=49.79  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++++|||+|-.|...|..|.+     .|++|+|+|++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~-----~g~~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHR-----MGHEVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-----TTCCCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----CCCeEEEecCcH
Confidence            479999999999999999999     999999999865

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.93  E-value=0.0027  Score=52.97  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEec
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFER   57 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~   57 (487)
                      ++|+|||||..|.+.|..|++     .|++|+++.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~-----~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVD-----NGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHH-----HCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----CCCEEEEEEe
Confidence            579999999999999999999     9999999965

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.84  E-value=0.0025  Score=53.61  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|+|||||.-|.+.|..|++     .|++|+++.++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~-----~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSK-----KCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHT-----TEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHH-----cCCeEEEEEecH
Confidence            579999999999999999999     999999998753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.80  E-value=0.0053  Score=49.52  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=32.5

Q ss_pred             CCCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +..++|+||| .|..|.+-|..|++     +|++|++++++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~-----~G~~V~~~d~~~   43 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRA-----SGYPISILDRED   43 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHT-----TTCCEEEECTTC
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHH-----cCCCcEeccccc
Confidence            4557899999 69999999999999     999999999864

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.79  E-value=0.0074  Score=46.45  Aligned_cols=52  Identities=2%  Similarity=-0.038  Sum_probs=39.1

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCE-E-EE---EEccCceEecCEEEEccC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREY-Y-EL---NSTKGNSYTCQITVVATP  307 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~-v-~V---~~~~G~~~~ad~VV~a~~  307 (487)
                      ..+.....+++.|++++++++|++|+.++++ + .+   ...++++++||.||+|++
T Consensus        65 ~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          65 TRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            4556666677789999999999999987643 2 22   234557899999999975

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.69  E-value=0.0074  Score=46.69  Aligned_cols=50  Identities=8%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEE--EEcc-C--ceEecCEEEEcc
Q 043512          257 WQMAAGLINRSDVALHLHEEIESISYLREYYEL--NSTK-G--NSYTCQITVVAT  306 (487)
Q Consensus       257 ~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V--~~~~-G--~~~~ad~VV~a~  306 (487)
                      .....+.+++.|++|++|++|++|+.+++++.|  ...+ |  +++++|.|++|+
T Consensus        69 ~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          69 RKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            334444456679999999999999987776544  4433 3  358999999885

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.35  E-value=0.007  Score=48.38  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      +..++|+|||+|-.|.++|+.|+.     .|  .++.++|.+.
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~-----~~~~~elvL~D~~~   40 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQ-----QGIAEEFVIVDVVK   40 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHh-----cCCCcEEEEeeccc
Confidence            456799999999999999999999     66  5899999754

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.30  E-value=0.0089  Score=48.17  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~   60 (487)
                      ..+|+|||||-+|+=+|..|.+     .|. +|+++++++.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r-----~GA~~V~vi~rr~~   80 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALR-----CGARRVFLVFRKGF   80 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHH-----TTCSEEEEECSSCG
T ss_pred             CCEEEEECCChhHHHHHHHHHH-----cCCcceeEEEeCCh
Confidence            4579999999999999999999     875 6889988654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.28  E-value=0.0058  Score=46.70  Aligned_cols=50  Identities=22%  Similarity=0.201  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccC--ceEecCEEEEccC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKG--NSYTCQITVVATP  307 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G--~~~~ad~VV~a~~  307 (487)
                      +.+...+.+++.|++++++++|+++.  ++...+...+|  ++++||.||+|++
T Consensus        64 ~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          64 LTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            34455555667799999999999985  44433333333  5799999999975

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.025  Score=43.65  Aligned_cols=52  Identities=8%  Similarity=-0.014  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEE---ccC------ceEecCEEEEccC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNS---TKG------NSYTCQITVVATP  307 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~---~~G------~~~~ad~VV~a~~  307 (487)
                      ..+.+...+++.|++|++|++|++|..+++++.+..   ..|      ....+|.||+|++
T Consensus        65 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          65 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            344555556678999999999999999888765443   233      2468999999975

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.99  E-value=0.011  Score=49.52  Aligned_cols=33  Identities=27%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             CcEEEE-CCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCII-GSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvII-GaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|| |+|-.|.+.|..|++     .|++|+|..|+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~-----~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLAT-----LGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-----TTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            469999 679999999999999     999999998863

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.97  E-value=0.015  Score=46.88  Aligned_cols=36  Identities=19%  Similarity=0.392  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ...++|+|||+|-.|.++|+.|+.     .+. +++++|.+.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~-----~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCAL-----RELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-----HTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-----CCCceEEEEEecc
Confidence            446899999999999999999988     664 899998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.92  E-value=0.012  Score=47.77  Aligned_cols=33  Identities=27%  Similarity=0.327  Sum_probs=30.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||-|..|...|..|++     +|++|.+++++.
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~-----~G~~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLK-----AGYSLVVSDRNP   33 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CEEEEEehhHHHHHHHHHHHH-----CCCeEEEEeCCc
Confidence            469999999999999999999     999999999864

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.88  E-value=0.014  Score=44.20  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=30.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      .++|+|||+|-.|..-|..|.+     .|.+|+|+...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~-----~ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLE-----AGARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-----CCCeEEEEecc
Confidence            5789999999999999999999     99999998653

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.84  E-value=0.0082  Score=48.22  Aligned_cols=32  Identities=16%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEe
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFE   56 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE   56 (487)
                      ..++|+|||||-.|+.-|..|.+     .|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~-----~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP-----TGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG-----GTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEe
Confidence            46889999999999999999999     999999994

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.68  E-value=0.016  Score=47.11  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+|.|||-|..|.+-|..|.+     +|++|.+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~-----~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLK-----AGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHH-----CCCeEEEEECch
Confidence            469999999999999999999     999999999863

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.68  E-value=0.027  Score=45.46  Aligned_cols=36  Identities=11%  Similarity=0.099  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           18 FQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      .-+.++|+|||+|-.|.++|+.|..     .|.  ++.++|.+
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~-----~~l~~ElvLiD~~   54 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILG-----KSLADELALVDVL   54 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHh-----cCCCcEEEEEEec
Confidence            3346799999999999999999999     876  89999985

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.40  E-value=0.019  Score=47.46  Aligned_cols=32  Identities=25%  Similarity=0.422  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++|.|||-|..|..-|..|.+     +|++|.+++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~-----~G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAE-----KGFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHH-----CCCeEEEEECC
Confidence            579999999999999999999     99999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.20  E-value=0.017  Score=43.24  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||+|.+|.-.|..|++     .+.+|++.-+++
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~-----~ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTP-----VAKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTT-----TSCSSEEEECTT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHH-----hcCEEEEEEecC
Confidence            45789999999999999999999     777877776654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=94.16  E-value=0.024  Score=46.75  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +.+|.|||-|..|...|..|.+     +|++|.+++++.
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~-----~G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMND-----HGFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH-----TTCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHH-----CCCeEEEEcCCH
Confidence            3579999999999999999999     999999999864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.05  E-value=0.026  Score=46.07  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....|+|+|+|..|+.++..++.     .|.+|+++|+++
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~-----~Ga~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKA-----YGAFVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCCEEEEEcccccchhhHhhHhh-----hcccccccchHH
Confidence            34579999999999999999988     999999999864

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.03  E-value=0.028  Score=44.86  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=30.4

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      ....+|.|||||-.|.++|+.|+.     .|.  ++.++|...
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~-----~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMN-----QGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSSH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh-----cCCCceEEEEeecc
Confidence            345689999999999999999999     664  799998753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.94  E-value=0.025  Score=44.96  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=28.5

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~   58 (487)
                      .++|+|||+|-.|.++|+.|..     .|  -++.+++.+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~-----~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIA-----QGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----HTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHh-----cCCCceEEEEecc
Confidence            3689999999999999999998     66  388888875

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.015  Score=49.60  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=31.6

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      |..++++|||||++|+.+|..|+++.   ...+|+++++...
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~---~~~~I~li~~e~~   40 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARD---PGARVLIVSEDPE   40 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHS---TTCEEEEEESSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcC---CCCcEEEEeCCCC
Confidence            45678999999999999999999832   3357999988643

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.039  Score=45.08  Aligned_cols=36  Identities=14%  Similarity=0.142  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...++|+|+|||-++-++++.|.+     .|.+|+|+-|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~al~~-----~g~~i~I~nRt~   51 (170)
T d1nyta1          16 RPGLRILLIGAGGASRGVLLPLLS-----LDCAVTITNRTV   51 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHhcc-----cceEEEeccchH
Confidence            346789999999999999999999     999999998863

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.74  E-value=0.027  Score=43.24  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeCCEEEEEEccCceEecCEEEEccCC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLREYYELNSTKGNSYTCQITVVATPL  308 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G~~~~ad~VV~a~~~  308 (487)
                      ..+.+...+++.|+++++|++|+++..  ++  +. .+++.+++|.||+|++.
T Consensus        74 ~~~~~~~~l~~~GV~~~~~~~v~~~~~--~~--v~-~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          74 LSNMIKDMLEETGVKFFLNSELLEANE--EG--VL-TNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHTTEEEECSCCEEEECS--SE--EE-ETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHCCcEEEeCCEEEEEeC--CE--EE-eCCCEEECCEEEEEEEe
Confidence            445555556677999999999999853  33  33 36668999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.035  Score=45.39  Aligned_cols=34  Identities=12%  Similarity=0.160  Sum_probs=30.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ...|+|+|+|..|+.++..++.     .|. +|++.|+++
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~-----~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKA-----MGAAQVVVTDLSA   61 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEESCH
T ss_pred             CCEEEEECCCccHHHHHHHHHH-----cCCceEEeccCCH
Confidence            4569999999999999999998     898 799999865

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.60  E-value=0.043  Score=43.28  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=28.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      .+|.|||+|-.|.++|+.|..     +|.  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~-----~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMAL-----RQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-----TTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeccC
Confidence            579999999999999999999     665  899999754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.54  E-value=0.037  Score=44.25  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=30.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||.|..|.+.|..|++     +|++|+++.+..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~-----~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRS-----RGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH-----TTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHH-----CCCeEEEEcCch
Confidence            479999999999999999999     999999998654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.44  E-value=0.036  Score=43.80  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=28.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ++|.|||+|-.|.++|+.|+.     .+. ++.+++...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~-----~~l~dl~l~D~~~   35 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAA-----KELGDIVLLDIVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HTCSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-----CCcceEEEEeecc
Confidence            589999999999999999998     664 899998643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.41  E-value=0.043  Score=44.68  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=27.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      ++|.|||.|..|.+.|..|.+     .|+  +|..+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L~~-----~g~~~~I~~~D~~   35 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRR-----SGFKGKIYGYDIN   35 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHH-----TTCCSEEEEECSC
T ss_pred             CEEEEEccCHHHHHHHHHHHh-----cCCCeEEEEEECC
Confidence            469999999999999999999     885  67777775

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.35  E-value=0.035  Score=46.52  Aligned_cols=32  Identities=22%  Similarity=0.319  Sum_probs=28.1

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|||.|..||.+|..+ .     .|++|+.+|-+.
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a-----~g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-S-----LQNEVTIVDILP   32 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-T-----TTSEEEEECSCH
T ss_pred             CEEEEECCChhHHHHHHHH-H-----CCCcEEEEECCH
Confidence            5799999999999999866 5     699999999765

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.34  E-value=0.048  Score=43.03  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=28.8

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      .+|+|||+|-.|.++|+.|..     +|.  ++.+++.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~-----~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQ-----RGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-----cCCCcEEEEEEecc
Confidence            479999999999999999999     775  899998653

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.32  E-value=0.042  Score=44.75  Aligned_cols=36  Identities=19%  Similarity=0.157  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      +...|+|+|+|..|+.++..++.     .|.+|++++.++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~-----~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKA-----MGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----HTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhh-----ccccccccccchh
Confidence            45679999999999999988888     8999999998753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.044  Score=42.27  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=32.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||+|-+.+-.|..|++     -..+|+++-|++.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~-----~a~~V~li~r~~~   61 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSN-----IASEVHLIHRRDG   61 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTT-----TSSEEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhh-----cCCcEEEEeeccc
Confidence            46799999999999999999999     8899999988754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.063  Score=43.15  Aligned_cols=33  Identities=12%  Similarity=0.149  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC--eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP--RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~--~V~VlE~~   58 (487)
                      ..+|.|||+|-.|.++|+.|..     .|.  ++.++|.+
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~-----~~l~~elvL~D~~   53 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILL-----KGLADELALVDAD   53 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-----TTSCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----cCCCCEEEEEeCC
Confidence            3579999999999999999999     765  89999875

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.049  Score=42.00  Aligned_cols=36  Identities=22%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||+|-+.+-.|..|++     -..+|+++-+.+.
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~-----~a~~V~li~r~~~   64 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAG-----IVEHVTLLEFAPE   64 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHT-----TBSEEEEECSSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhc-----cCCceEEEecccc
Confidence            35789999999999999999999     7889999988764

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.22  E-value=0.059  Score=42.87  Aligned_cols=34  Identities=21%  Similarity=0.471  Sum_probs=28.8

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ..+|.|||+|-.|.++|+.|..     .+ .++.++|.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~-----~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQ-----KNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-----TTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHh-----CCCCeEEEEeccC
Confidence            5689999999999999998888     55 3888898754

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.20  E-value=0.049  Score=42.95  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=29.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ++|+|||||-.|.+.|+.|+.     .|  -++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~-----~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAE-----KQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----TTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----CCCCceEEEecccc
Confidence            479999999999999999999     66  4899999765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.08  E-value=0.059  Score=43.61  Aligned_cols=35  Identities=17%  Similarity=0.178  Sum_probs=30.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .|.+|+++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~-----~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARA-----MGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHH-----cCCccceecchh
Confidence            34579999999999999998888     999999998864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.93  E-value=0.12  Score=39.33  Aligned_cols=52  Identities=4%  Similarity=-0.047  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHhcCCeEEeCCceEEEEEeC----CEEEEEEccC-----ceEecCEEEEccC
Q 043512          256 NWQMAAGLINRSDVALHLHEEIESISYLR----EYYELNSTKG-----NSYTCQITVVATP  307 (487)
Q Consensus       256 ~~~l~~~l~~~~G~~i~~~~~V~~I~~~~----~~v~V~~~~G-----~~~~ad~VV~a~~  307 (487)
                      +...+.+.+++.|++|++|+.|++++..+    +.+.++..++     ...++|.|++|++
T Consensus        62 ~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          62 MANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            34455555667799999999999998643    2345544332     2357899999875

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.74  E-value=0.054  Score=42.84  Aligned_cols=32  Identities=31%  Similarity=0.419  Sum_probs=28.2

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCC--CeEEEEecC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWH--PRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G--~~V~VlE~~   58 (487)
                      ++|.|||| |-.|.++|+.|+.     .|  .++.+++..
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~-----~~l~~el~L~D~~   35 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAK-----EPFMKDLVLIGRE   35 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHT-----CTTCCEEEEEECG
T ss_pred             CEEEEECCCChHHHHHHHHHHh-----CCcccccccccch
Confidence            47999996 9999999999999     77  489999875

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.71  E-value=0.046  Score=43.71  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=29.7

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++|.|||+|-.|.+.|..|.+     .|++|+|++++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~-----~~~~i~v~~r~   32 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQ-----TPHELIISGSS   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-----SSCEEEEECSS
T ss_pred             CEEEEEeccHHHHHHHHHHHh-----CCCeEEEEcCh
Confidence            479999999999999999999     99999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.70  E-value=0.063  Score=43.60  Aligned_cols=34  Identities=18%  Similarity=0.299  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..++|+|||+|-++-++++.|.+     .|. +|+|+-|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~-----~g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKN-----SGFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHH-----TTCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-----CCCCEEEEeccc
Confidence            45789999999999999999999     896 89999775

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.63  E-value=0.064  Score=41.51  Aligned_cols=36  Identities=19%  Similarity=0.481  Sum_probs=33.0

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||+|-+.+-.|.+|++     --.+|+++-|++.
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~-----~a~~V~li~r~~~   68 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTK-----YGSKVYIIHRRDA   68 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTT-----TSSEEEEECSSSS
T ss_pred             CCCEEEEEcCchHHHHHHHHHhC-----CCCcEEEEEeccc
Confidence            46899999999999999999999     7789999998876

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.33  E-value=0.058  Score=42.50  Aligned_cols=33  Identities=18%  Similarity=0.126  Sum_probs=28.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC--CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH--PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G--~~V~VlE~~~   59 (487)
                      ++|.|||+|-.|.++|+.|+.     .|  -++.++|.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~-----~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLL-----NLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHh-----cCcCceEEEEeccc
Confidence            579999999999999999998     55  3799998653

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.1  Score=39.76  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=34.6

Q ss_pred             CCCCCCCCcEEEECCCh-----------hHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           15 QPTFQQEPTVCIIGSGI-----------GGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        15 ~~~~~~~~dVvIIGaGi-----------aGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      |+.....++|+|||+|+           ++..|+..|++     .|++++++--++.
T Consensus         1 mp~~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke-----~g~~~iliN~NP~   52 (127)
T d1a9xa3           1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALRE-----EGYRVINVNSNPA   52 (127)
T ss_dssp             CCCCSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHH-----HTCEEEEECSCTT
T ss_pred             CCCCCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHH-----cCCeEEEecCchH
Confidence            44556678999999986           78899999999     9999999988764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.093  Score=42.50  Aligned_cols=36  Identities=14%  Similarity=0.175  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+...|+|+|+|..|+.++..++.     .|.+|++++.++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~-----~Ga~~i~~~~~~   64 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHA-----MGAHVVAFTTSE   64 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHH-----TTCEEEEEESSG
T ss_pred             CCCCEEEEeccchHHHHHHHHhhc-----ccccchhhccch
Confidence            345679999999999999999988     999999998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.94  E-value=0.0035  Score=54.67  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=33.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG   62 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G   62 (487)
                      .++|+|||||..|+-+|..|++     .|.+|+|+++++.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~-----~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEE-----ANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTS-----SCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHh-----cCCceEEEEeccccc
Confidence            4679999999999999999999     999999999998753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.67  E-value=0.061  Score=43.29  Aligned_cols=41  Identities=7%  Similarity=0.003  Sum_probs=29.8

Q ss_pred             HhcCCeEEeCCceEEEEEeCCEEEEEEccC-ceEecCEEEEccC
Q 043512          265 NRSDVALHLHEEIESISYLREYYELNSTKG-NSYTCQITVVATP  307 (487)
Q Consensus       265 ~~~G~~i~~~~~V~~I~~~~~~v~V~~~~G-~~~~ad~VV~a~~  307 (487)
                      +..|+++..++.|.+|.  ++++.+...+. +.+.||.||+|++
T Consensus       119 ~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         119 LSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             hhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence            35678999999999985  55554443222 3589999999987

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.34  E-value=0.1  Score=42.86  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      ....|+|+|+|..|+.++..++.     .|. +|++.+.++
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~-----~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARS-----LGAENVIVIAGSP   63 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH-----TTBSEEEEEESCH
T ss_pred             CCCEEEEECCCccchhheecccc-----ccccccccccccc
Confidence            34679999999999999999998     897 799999865

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.19  Score=37.52  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             CCCCCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           16 PTFQQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        16 ~~~~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +..+...+|.|||||--|--.|....+     -|++|.+++.+.
T Consensus         6 ~~~~~~~kigIlGgGQL~rMla~aA~~-----lG~~v~v~d~~~   44 (111)
T d1kjqa2           6 ALRPAATRVMLLGSGELGKEVAIECQR-----LGVEVIAVDRYA   44 (111)
T ss_dssp             TTSTTCCEEEEESCSHHHHHHHHHHHT-----TTCEEEEEESST
T ss_pred             CCCCCCCEEEEEeCCHHHHHHHHHHHH-----CCCEEEEEcCCC
Confidence            334556789999999999999999999     999999999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.24  E-value=0.1  Score=41.05  Aligned_cols=32  Identities=22%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             cEEEECC-ChhHHHHHHHHHHhcCCCCCC--eEEEEecCC
Q 043512           23 TVCIIGS-GIGGSSLAHFLRQYSSKNWHP--RILMFERNG   59 (487)
Q Consensus        23 dVvIIGa-GiaGLsaA~~L~~~~~~~~G~--~V~VlE~~~   59 (487)
                      +|+|||| |..|.++|+.|+.     .|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~-----~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKN-----SPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHT-----CTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHh-----CCccceEEEEeccc
Confidence            6999996 9999999999998     774  788888753

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.18  E-value=0.13  Score=40.33  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.|||+|-.|.++|+.|+...   -..++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~---l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKG---FAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT---CCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCC---CCCEEEEEeccc
Confidence            47999999999999999999822   225899998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.87  E-value=0.15  Score=40.39  Aligned_cols=67  Identities=10%  Similarity=0.083  Sum_probs=44.3

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCCcc-ceeEEEeeCCeEecccceeEecCChhHHHHHHHcCCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGVVG-GRMATVTISGQTFEAGASILHPKNYHTVNFTKLLNLKP  100 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~~G-Gr~~s~~~~g~~~d~G~~~~~~~~~~~~~~~~~lgl~~  100 (487)
                      -+|+|+|.|-.|...|..|.+     .|.+|+|+|.....- -+..      .....|..++.+.. ...+.+++.|+..
T Consensus         4 nHiII~G~g~~g~~l~~~L~~-----~~~~v~vId~d~~~~~~~~~------~~~~~~~~vi~Gd~-~d~~~L~~a~i~~   71 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQ-----RGQNVTVISNLPEDDIKQLE------QRLGDNADVIPGDS-NDSSVLKKAGIDR   71 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-----TTCCEEEEECCCHHHHHHHH------HHHCTTCEEEESCT-TSHHHHHHHTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHH-----cCCCEEEEeccchhHHHHHH------HhhcCCcEEEEccC-cchHHHHHhcccc
Confidence            369999999999999999999     999999999864200 0000      00123455555432 2236778888764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.79  E-value=0.1  Score=41.45  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=28.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ++|.+||+|-.|.+.|..|.+     .| ++|.+++++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~-----~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVK-----QGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-----HCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHH-----CCCCcEEEEeCCh
Confidence            479999999999999998887     55 8999998863

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.73  E-value=0.14  Score=41.65  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=29.8

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .|. +|++.|.++
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~-----~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKI-----AGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHH-----hCCceeeeeccch
Confidence            44579999999999999999999     897 677778764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.70  E-value=0.14  Score=41.73  Aligned_cols=35  Identities=20%  Similarity=0.124  Sum_probs=29.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .|. +|++.+.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~-----~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKL-----RGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHT-----TTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhc-----ccccccccccchh
Confidence            34579999999999999999998     886 799998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.57  E-value=0.15  Score=40.99  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .|.+|++.+.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~-----~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKA-----MGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhc-----CCCeEeccCCCH
Confidence            34679999999999999999998     999999988753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=90.53  E-value=0.11  Score=42.27  Aligned_cols=36  Identities=22%  Similarity=0.228  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ...++|+|+|+|-++-++++.|.+     .+.+|+|+-|+.
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~-----~~~~i~I~nR~~   51 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQ-----AQQNIVLANRTF   51 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHH-----TTCEEEEEESSH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcc-----cCceeeeccchH
Confidence            456789999999999999999999     889999998863

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.12  E-value=0.15  Score=42.37  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=28.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +..+|+|+|+|..|+.++..++.     .|. +|++.+.++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~-----~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARL-----LGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHh-----hcccceeeecccc
Confidence            45589999999999999999887     665 788888754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.96  E-value=0.21  Score=39.27  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=28.0

Q ss_pred             CcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|.||| +|-.|.++|+.|+....  .+.++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~--~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLP--SGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSC--TTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCC--CCcEEEEecccc
Confidence            4799999 59999999999865211  357899998754

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.88  E-value=0.19  Score=41.95  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=30.5

Q ss_pred             CCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .++|+|+|| |..|...+..|.+     +|++|+++-|+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~-----~g~~V~~~~R~~   37 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQ-----AGYEVTVLVRDS   37 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHH-----TTCEEEEEESCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-----CcCEEEEEEcCh
Confidence            467999995 9999999999999     999999998753

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.86  E-value=0.18  Score=41.04  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ...|+|+|+|..|+.++..++.     .| .+|+++|.++
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~-----~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKS-----AGASRIIGIDLNK   64 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCG
T ss_pred             CCEEEEECCCchhHHHHHHHHH-----cCCceEEEecCcH
Confidence            4459999999999999999999     88 5899999865

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.28  Score=36.76  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCh-----------hHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGI-----------GGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGi-----------aGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..++|+|||+|+           ++..|+..|++     .|++++++--++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~-----~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE-----DGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH-----TTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh-----cCCeEEEEecChh
Confidence            457899999994           78899999999     9999999987753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.69  E-value=0.17  Score=44.52  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+++|+|+|| |..|-..+..|.+     +|++|+++.|+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~-----~G~~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLD-----LGHPTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-----TTCCEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHH-----CCCeEEEEECCC
Confidence            4678999998 9999999999999     999999999864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.25  Score=40.44  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=31.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~~   60 (487)
                      ..++|+|||+|-+|-++++.|.+     .|. +++|+.|+..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~-----~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAI-----EGLKEIKLFNRRDE   53 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHhh-----cCCceEeeeccchH
Confidence            45789999999999999999999     775 8899988654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.72  E-value=0.21  Score=39.90  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      -..++|+|||+|-.|-..|..|.+     .|. +|+|+-|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~-----~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVD-----RGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHH-----HCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHh-----cCCcEEEEEcCc
Confidence            356789999999999999999999     887 69998775

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.67  E-value=0.17  Score=41.25  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ..++|+|||+|-++-++++.|.+     .| +|.|+-|+
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~-----~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAK-----DN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTS-----SS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc-----cc-ceeeehhh
Confidence            45789999999999999999987     77 99999775

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.29  E-value=0.25  Score=43.76  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=31.1

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++.+|+|+|| |..|...+..|.+     +|++|+++-|+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~-----~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASIS-----LGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHH-----TTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHh-----CCCEEEEEECCC
Confidence            4567999997 9999999999999     999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.24  E-value=0.31  Score=35.13  Aligned_cols=37  Identities=22%  Similarity=0.132  Sum_probs=31.6

Q ss_pred             CCCCCcEEEECCChhHHHH-HHHHHHhcCCCCCCeEEEEecCC
Q 043512           18 FQQEPTVCIIGSGIGGSSL-AHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        18 ~~~~~dVvIIGaGiaGLsa-A~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ....++|-+||-|=+|.++ |..|.+     +|++|+-.|...
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~-----~G~~VsGSD~~~   42 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN-----EGYQISGSDIAD   42 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH-----HTCEEEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh-----CCCEEEEEeCCC
Confidence            4456789999999999888 999999     999999988753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=87.83  E-value=0.28  Score=38.31  Aligned_cols=30  Identities=13%  Similarity=0.303  Sum_probs=26.3

Q ss_pred             cEEEEC-CChhHHHHHHHHHHhcCCCCCC--eEEEEec
Q 043512           23 TVCIIG-SGIGGSSLAHFLRQYSSKNWHP--RILMFER   57 (487)
Q Consensus        23 dVvIIG-aGiaGLsaA~~L~~~~~~~~G~--~V~VlE~   57 (487)
                      +|.||| +|-.|.++|+.|..     +|.  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~-----~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIAL-----RDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHH-----TTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHh-----CCCCCEEEEEec
Confidence            699999 69999999999999     664  7888884

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.56  E-value=0.19  Score=42.58  Aligned_cols=35  Identities=20%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..++|+|||+|-+|.=+|+.|++     .+.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~-----~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAK-----QAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHH-----HBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHh-----hhcccccccccc
Confidence            46899999999999999999999     888888886653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.47  E-value=0.34  Score=39.88  Aligned_cols=35  Identities=14%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ..+.|+|.| +|-.|..+|..|++     .|.+|+++.|+.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~-----~G~~V~~~~r~~   57 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAG-----EGAEVVLCGRKL   57 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHh-----hccchhhcccch
Confidence            457788998 58889999999999     999999998864

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.20  E-value=0.25  Score=40.06  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=28.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeE-EEEecCC
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRI-LMFERNG   59 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V-~VlE~~~   59 (487)
                      .+..+|+|+|+|..|+.++..++.     .|.++ ++.+.++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~-----~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKV-----CGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHH-----HTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccc-----cccceeeeeccHH
Confidence            345679999999999999999988     77655 5566543

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.65  E-value=0.31  Score=39.47  Aligned_cols=35  Identities=20%  Similarity=0.098  Sum_probs=29.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .|. +|++.+.++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~-----~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKA-----AGASRIIGVGTHK   62 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----HTCSEEEEECSCG
T ss_pred             CCCEEEEECCCchhHHHHHHHHH-----cCCceeeccCChH
Confidence            34569999999999999999998     785 788888764

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.29  E-value=0.94  Score=35.69  Aligned_cols=29  Identities=31%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             CCCCcEEEECCChhHHHHHHHHHHhcCCCCCCeE
Q 043512           19 QQEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRI   52 (487)
Q Consensus        19 ~~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V   52 (487)
                      ...++|+|||||..|+-+|..+++     .|.++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r-----~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQ-----PGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTC-----CSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHH-----cCCcc
Confidence            345799999999999999999999     77644

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.09  E-value=0.38  Score=38.28  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|||=|-.|-.+|..|+.     .|.+|+|+|..+
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg-----~G~~V~v~e~dp   57 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRG-----FGARVIITEIDP   57 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-----TTCEEEEECSCH
T ss_pred             CCEEEEeccccccHHHHHHHHh-----CCCeeEeeeccc
Confidence            5789999999999999999999     999999999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.97  E-value=0.45  Score=38.31  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..+++     .|- +|++.+.++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~-----~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHS-----AGAKRIIAVDLNP   63 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCG
T ss_pred             CCCEEEEEecCCccchHHHHHHH-----HhhchheeecchH
Confidence            34559999999999999999998     664 788888765

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.68  E-value=0.48  Score=43.17  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=31.0

Q ss_pred             CCCcEEEEC-CChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIG-SGIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIG-aGiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +.++|+|+| +|..|...+..|.+     +|++|+++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~-----~g~~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKH-----EGHYVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHH-----CcCEEEEEeCC
Confidence            578899999 59999999999999     99999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.20  E-value=0.36  Score=38.89  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      +...|+|+|+|..|+.++..++.     .| ..|++.++++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~-----~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKV-----MTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----HCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHh-----hcCcccccccchh
Confidence            45679999999999999999987     66 5777788764

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.09  E-value=0.68  Score=37.99  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           22 PTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        22 ~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++|+|||||.+|+.+|..|+++.   .+.+|+|+|+++.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~---~~~~V~v~~~~~~   36 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLH---PDAEIQWYEKGDF   36 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHC---TTSEEEEEESSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcC---CCCeEEEEeCCCc
Confidence            57999999999999999999954   5779999998764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.01  E-value=0.53  Score=37.97  Aligned_cols=35  Identities=26%  Similarity=0.205  Sum_probs=29.3

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      +...|+|+|+|-.|++++..++.     .| .+|++.+.++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~-----~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKA-----AGAARIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHH-----TTCSEEEEECSCG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHH-----cCCceEEeecCcH
Confidence            34569999999999999999999     77 5888888764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.57  E-value=0.15  Score=39.09  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=26.9

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEE-EecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILM-FERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~V-lE~~~~   60 (487)
                      .+++|+|+|||-+|.+.+..+.+.    .|++++- +|-+..
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~----~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFG----ESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCC----SSEEEEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhc----CCcEEEEEEeCchH
Confidence            356899999999999998877542    6777654 565443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.26  E-value=0.3  Score=42.59  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++|+|+|| |..|-..+.+|.+     +|++|+.+.+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~-----~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKG-----KNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTT-----SSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHh-----CCCEEEEeechh
Confidence            57999998 9999999999999     999999998764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=84.07  E-value=0.39  Score=41.35  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCC-eEEEEecC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHP-RILMFERN   58 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~-~V~VlE~~   58 (487)
                      ..+|+|||+|-.|..+|..|++     .|. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~-----~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLAS-----AGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHH-----HTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-----cCCCeEEEECCc
Confidence            3689999999999999999999     896 88888863

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.65  E-value=0.62  Score=37.64  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ++.+|+|||||++|+.+|..|++     .|.+|+|++..++
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~-----~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQ-----AGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHH-----HTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHh-----cCCceEEEEEecc
Confidence            45679999999999999999999     8988888876544

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.61  E-value=0.64  Score=39.57  Aligned_cols=35  Identities=14%  Similarity=0.030  Sum_probs=30.0

Q ss_pred             CCcEEEECCCh-hHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           21 EPTVCIIGSGI-GGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        21 ~~dVvIIGaGi-aGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      .+.|+|.||+= .|.++|..|++     +|.+|.++++...
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~-----~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRA-----RNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHT-----TTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHH-----CCCEEEEEeCCcc
Confidence            57899999965 49999999999     9999999987543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.50  E-value=0.59  Score=40.34  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=26.8

Q ss_pred             CcE-EEECCCh-hHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           22 PTV-CIIGSGI-GGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        22 ~dV-vIIGaGi-aGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      ++| +|.||+- .|.+.|..|++     .|.+|++..++.
T Consensus         1 KKValITGas~GIG~aia~~la~-----~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVK-----DGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHH-----CCCEEEEEECCH
Confidence            456 5557765 49999999999     999999998863

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=82.68  E-value=0.7  Score=41.76  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      +++.|+|+|| |..|.+.+..|.+     +|++|+++=|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~-----~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAA-----VGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHH-----TTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHh-----CCCeEEEEECC
Confidence            5678999997 9999999999999     99999999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=82.35  E-value=0.69  Score=36.96  Aligned_cols=35  Identities=14%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHHhcCCCCC-CeEEEEecCC
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQYSSKNWH-PRILMFERNG   59 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~~~~~~~G-~~V~VlE~~~   59 (487)
                      ...+|+|+|+ |..|+.++..++.     .| .+|++.+.++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~-----~g~~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKA-----VSGATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH-----HTCCEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeecccc-----cccccccccccch
Confidence            3456999995 9999999999988     67 5899998764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.32  E-value=0.53  Score=37.28  Aligned_cols=34  Identities=24%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 043512           21 EPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNG   59 (487)
Q Consensus        21 ~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~   59 (487)
                      .+.|+|+|=|-.|-.+|..|+.     .|.+|+|.|..+
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg-----~Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKG-----LGARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHH-----HTCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHh-----CCCEEEEEecCc
Confidence            5789999999999999999999     999999999865

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.48  E-value=0.7  Score=41.57  Aligned_cols=32  Identities=22%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             CcEEEECC-ChhHHHHHHHHHHhcCCCCCCeEEEEecC
Q 043512           22 PTVCIIGS-GIGGSSLAHFLRQYSSKNWHPRILMFERN   58 (487)
Q Consensus        22 ~dVvIIGa-GiaGLsaA~~L~~~~~~~~G~~V~VlE~~   58 (487)
                      ++|+|+|| |..|...+..|.+     .|++|+++++-
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~-----~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQ-----NGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-----TTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHH-----CcCEEEEEECC
Confidence            46999997 8999999999999     99999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.65  E-value=1.2  Score=36.05  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             CCCcEEEECCChhHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 043512           20 QEPTVCIIGSGIGGSSLAHFLRQYSSKNWHPRILMFERNGV   60 (487)
Q Consensus        20 ~~~dVvIIGaGiaGLsaA~~L~~~~~~~~G~~V~VlE~~~~   60 (487)
                      ..+.|.|||.|..|-..|..|..     -|.+|.++++...
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~-----~g~~v~~~d~~~~   76 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAA-----LGAQVRGFSRTPK   76 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHH-----TTCEEEEECSSCC
T ss_pred             cCceEEEeccccccccceeeeec-----ccccccccccccc
Confidence            45789999999999999999999     9999999998654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.42  E-value=1.4  Score=37.44  Aligned_cols=40  Identities=15%  Similarity=0.098  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCh-hHHHHHHHHHHhcCCCCCCeEEEEecCCCccce
Q 043512           20 QEPTVCIIGSGI-GGSSLAHFLRQYSSKNWHPRILMFERNGVVGGR   64 (487)
Q Consensus        20 ~~~dVvIIGaGi-aGLsaA~~L~~~~~~~~G~~V~VlE~~~~~GGr   64 (487)
                      +.+.++|.||+= .|.++|..|++     .|.+|++..++......
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~-----~Ga~V~~~~r~~~~~~~   46 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAA-----DGHKVAVTHRGSGAPKG   46 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHH-----TTCEEEEEESSSCCCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH-----CCCEEEEEECCcchhcC
Confidence            346688888875 49999999999     99999999997654443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.28  E-value=0.42  Score=37.83  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=20.5

Q ss_pred             CCCcEEEECC-ChhHHHHHHHHHH
Q 043512           20 QEPTVCIIGS-GIGGSSLAHFLRQ   42 (487)
Q Consensus        20 ~~~dVvIIGa-GiaGLsaA~~L~~   42 (487)
                      ...+|.|||| |..|.++|+.|+.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~   25 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGN   25 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHH
Confidence            4568999996 9999999999986