Citrus Sinensis ID: 043543


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRKRKGPLPGIKGRARFRTEESFYENPYPECICSSKAA
cEEEEEEcccEEEcccccccccccccccccccccHHHHHHHccccEEEEccccHHHccccccccccccccHHHHHHHHHHHHHHccEEEEEEcccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHccccccccHHHHHHHHHHHHccccccccccccHHHHccccccccHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHccccHHHcccccHHHHHHHHHccHHHHHHHHHEEccccEEccccccccHHHHHHHHHHcccccEEcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
cEEEHHHHHEEEEcccccccccccccccHHHHccHHHHHHHHHHHcEHHHcccHHHccccccccccccccHHHHHHHHHHHHHHccEEEEcccHHHHHcccccHHHHHHEEHHHHHHHcccHHHHHHHHHHHHHHHHccccEEEEEEEEcccHEEEccccccccHHHHHHHHHHHHHcccccEEEccHHHHHHcccccccHHHHHHHHHHcccccccEEEEEEcEEccccHHHHHHHHHccccccccccccHHHHHHccccHHHHHHHHHHEEccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEccHHHHHHHHHHHHHccccccccccccccccccccccccccHHccccccccccccccc
MVAVAHIMNATlvipqldkrsfwkdsstfsdmfDEVHFIKTLRGDLRIAKELpkelesvprarkhftswsgvGYYEEMTQLFKEYQVIHVAksdsrlanndlplDIQRLRCRALYYAlrfsppieILGEKLVERLRSLGGRYIALHLRYEKDmlsftgctygltdaeskELTIMRENTnhwkvkkinsteqriggycpltpkEVGIFLqalgyppstiIYIAAgeiyggnthLSELMYrfpnlvfkeTLATKEELKAFANHASQTAALDYLISVesdvfipshsgnmARAVEGHRRFlghrktitpdrRGLVELFDKlksgklregpsfsQRVQQIHEnwqggprkrkgplpgikgrarfrteesfyenpypecicsskaa
MVAVAHIMnatlvipqldkrsfWKDSSTFSDMFDEVHFIKTLRGDLRIAKElpkelesvprarkhftswsGVGYYEEMTQLFKEYQVIHVAKsdsrlanndlPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMrentnhwkvkkinsteqriggYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFlghrktitpdrrglVELFDKLKSgklregpsfsqrVQQIhenwqggprkrkgplpgikgrarfrteesfyenpypecicsskaa
MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQrlrcralyyalrFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTiiyiaageiyggNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQggprkrkgplpgikgrARFRTEESFYENPYPECICSSKAA
***VAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFD*****************************************************************
MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELE*******HFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVE*LRS*GGRYIALHLRYEKDMLSFTGCTYGLTDAESK******E********************CPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQI***************************ESFYENPYPECICSS***
MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRKRKGPLPGIKGRARFRTEESFYENPYPECICSSKAA
MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRK****************EESFYENPYPECICS****
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MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRKRKGPLPGIKGRARFRTEESFYENPYPECICSSKAA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q8W486519 Uncharacterized protein A no no 0.923 0.678 0.372 7e-60
>sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 Back     alignment and function desciption
 Score =  231 bits (589), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 211/387 (54%), Gaps = 35/387 (9%)

Query: 2   VAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELP-------- 53
           V  A IMNATLV+P+LD  SFW D S F  ++D  HFI+TL+ D++I  ++P        
Sbjct: 111 VLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKNGKT 170

Query: 54  KELES--VPRARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRC 111
           K++++  +   R     W    Y     +  +E+  I++     RLA      + QRLRC
Sbjct: 171 KKIKAFQIRPPRDAPIEW----YLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRLRC 226

Query: 112 RALYYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKEL 171
           R  Y+ALRF P I  L E +V++LRS  G ++++HLR+E DML+F GC       E K L
Sbjct: 227 RVNYHALRFKPHIMKLSESIVDKLRS-QGHFMSIHLRFEMDMLAFAGCFDIFNPEEQKIL 285

Query: 172 TIMRENTNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNT 231
              R+   ++  K++   E+R  G CPLTP+EVG+ L+A+ +  ST IY+AAGE++GG  
Sbjct: 286 RKYRKE--NFADKRLIYNERRAIGKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQ 343

Query: 232 HLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSG--NMAR 289
            +      FP L    ++   EEL A  +     +A+DY++ + SD+F+P++ G  N A 
Sbjct: 344 FMKPFRTLFPRLDNHSSVDPSEELSA-TSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFAN 402

Query: 290 AVEGHRRFLGHRKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRKRKG 349
            + GHR + G R TI PDR+ L  +F   + GK R G   + R   +  N+ GGP KR  
Sbjct: 403 NLLGHRLYYGFRTTIRPDRKALAPIFIAREKGK-RAGFEEAVRRVMLKTNF-GGPHKRVS 460

Query: 350 PLPGIKGRARFRTEESFYENPYPECIC 376
           P             ESFY N +PEC C
Sbjct: 461 P-------------ESFYTNSWPECFC 474





Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
255552394411 conserved hypothetical protein [Ricinus 0.994 0.922 0.841 0.0
225431485451 PREDICTED: DUF246 domain-containing prot 0.994 0.840 0.823 0.0
224131156401 predicted protein [Populus trichocarpa] 1.0 0.950 0.824 0.0
296088556 499 unnamed protein product [Vitis vinifera] 0.994 0.759 0.823 0.0
356516352 510 PREDICTED: DUF246 domain-containing prot 0.997 0.745 0.821 0.0
356507475 509 PREDICTED: DUF246 domain-containing prot 0.997 0.746 0.821 0.0
297794049 521 hypothetical protein ARALYDRAFT_496672 [ 0.994 0.727 0.778 1e-178
18700109391 AT5g64600/MUB3_12 [Arabidopsis thaliana] 0.994 0.969 0.775 1e-178
42568771 522 O-fucosyltransferase family protein [Ara 0.994 0.726 0.775 1e-177
10178063 539 auxin-independent growth promoter-like p 0.994 0.703 0.775 1e-177
>gi|255552394|ref|XP_002517241.1| conserved hypothetical protein [Ricinus communis] gi|223543612|gb|EEF45141.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/379 (84%), Positives = 351/379 (92%)

Query: 1   MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVP 60
           MVAVAHIMNATLVIPQLDKRSFW+DSSTF D+FDE+HFI +L+ D+RI KELPKELES+P
Sbjct: 29  MVAVAHIMNATLVIPQLDKRSFWQDSSTFPDIFDELHFITSLQNDVRIVKELPKELESLP 88

Query: 61  RARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYALRF 120
           RARKHFTSWSG+GYYEEMT+L+KE+QVIHV KSDSRL+NNDLPLDIQRLRCRALY+ALRF
Sbjct: 89  RARKHFTSWSGMGYYEEMTRLWKEFQVIHVPKSDSRLSNNDLPLDIQRLRCRALYHALRF 148

Query: 121 SPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNH 180
           SPPIE LG+ LV RL S GGRYIALHLRYEKDMLSFTGC YGLT+AES+EL +MRE+TNH
Sbjct: 149 SPPIESLGKTLVGRLISRGGRYIALHLRYEKDMLSFTGCNYGLTEAESEELRLMRESTNH 208

Query: 181 WKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRF 240
           WKVKKINSTEQR  G+CPLTPKEVGIFLQALGY PS IIYIAAGEIYGG +HL ELM RF
Sbjct: 209 WKVKKINSTEQREAGFCPLTPKEVGIFLQALGYSPSMIIYIAAGEIYGGESHLLELMARF 268

Query: 241 PNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGH 300
           PN VFKETLAT EELKAFA HASQTAALDY+ISVESDVF+PSHSGNMARAVEGHRRFLGH
Sbjct: 269 PNTVFKETLATPEELKAFAKHASQTAALDYIISVESDVFVPSHSGNMARAVEGHRRFLGH 328

Query: 301 RKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQGGPRKRKGPLPGIKGRARF 360
           RKTITP+RRGLV+LFDKL+SG+++EGP+FS  VQ++H+N QG PRKRKGPLPGIKGRAR 
Sbjct: 329 RKTITPERRGLVKLFDKLESGQMKEGPTFSNIVQEMHKNRQGAPRKRKGPLPGIKGRARL 388

Query: 361 RTEESFYENPYPECICSSK 379
           RTEESFYENPYPECIC SK
Sbjct: 389 RTEESFYENPYPECICRSK 407




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431485|ref|XP_002274676.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224131156|ref|XP_002328468.1| predicted protein [Populus trichocarpa] gi|222838183|gb|EEE76548.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296088556|emb|CBI37547.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356516352|ref|XP_003526859.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|356507475|ref|XP_003522491.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] Back     alignment and taxonomy information
>gi|297794049|ref|XP_002864909.1| hypothetical protein ARALYDRAFT_496672 [Arabidopsis lyrata subsp. lyrata] gi|297310744|gb|EFH41168.1| hypothetical protein ARALYDRAFT_496672 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18700109|gb|AAL77666.1| AT5g64600/MUB3_12 [Arabidopsis thaliana] gi|21464583|gb|AAM52246.1| AT5g64600/MUB3_12 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|42568771|ref|NP_201265.3| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|332010542|gb|AED97925.1| O-fucosyltransferase family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|10178063|dbj|BAB11427.1| auxin-independent growth promoter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2174754522 AT5G64600 [Arabidopsis thalian 0.994 0.726 0.693 4.9e-140
TAIR|locus:2009467565 AT1G22460 [Arabidopsis thalian 0.984 0.663 0.527 1.4e-103
TAIR|locus:2157096652 AT5G35570 [Arabidopsis thalian 0.965 0.564 0.444 3.7e-80
TAIR|locus:2065563638 AT2G37980 [Arabidopsis thalian 0.963 0.575 0.451 1.2e-79
TAIR|locus:2080285638 AT3G54100 [Arabidopsis thalian 0.965 0.576 0.439 1.6e-77
TAIR|locus:2150129631 FRB1 "FRIABLE 1" [Arabidopsis 0.976 0.589 0.432 5.5e-77
TAIR|locus:2014869499 AT1G14020 [Arabidopsis thalian 0.960 0.733 0.430 5.1e-74
TAIR|locus:2076552512 AT3G02250 [Arabidopsis thalian 0.960 0.714 0.431 1.2e-72
TAIR|locus:2056981508 AT2G03280 [Arabidopsis thalian 0.950 0.712 0.415 1.8e-72
TAIR|locus:2143181508 AT5G15740 [Arabidopsis thalian 0.960 0.720 0.426 2.3e-71
TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1370 (487.3 bits), Expect = 4.9e-140, P = 4.9e-140
 Identities = 263/379 (69%), Positives = 303/379 (79%)

Query:     1 MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVP 60
             +VAVAHIMNATLVIP+LDKRSFW+DSS FSD+FDE  FIK+LR D+++ K+LPKE+ES+P
Sbjct:   139 IVAVAHIMNATLVIPELDKRSFWQDSSVFSDIFDEEQFIKSLRRDVKVIKKLPKEVESLP 198

Query:    61 RARKHFTSWSGVGYYEEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQXXXXXXXXXXXXF 120
             RARKHFTSWS VGYYEEMT L+KEY+VIHVAKSDSRLANNDLP+D+Q            F
Sbjct:   199 RARKHFTSWSSVGYYEEMTHLWKEYKVIHVAKSDSRLANNDLPIDVQRLRCRVLYRGLCF 258

Query:   121 SPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNH 180
             SP IE LG+KLVERL+S  GRYIALHLRYEKDML+FTGCTYGLTDAES+EL +MRE+T+H
Sbjct:   259 SPAIESLGQKLVERLKSRAGRYIALHLRYEKDMLAFTGCTYGLTDAESEELRVMRESTSH 318

Query:   181 WKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTXXXXXXXXXXXXNTHLSELMYRF 240
             WK+K INSTEQR  G CPLTPKEVGIFL+ LGY  ST            +  LSEL  RF
Sbjct:   319 WKIKSINSTEQREEGLCPLTPKEVGIFLKGLGYSQSTVIYIAAGEIYGGDDRLSELKSRF 378

Query:   241 PNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRFLGH 300
             PNLVFKETLA  EELK F  HA++TAALDY+ISVESDVF+PSHSGNMARAVEGHRRFLGH
Sbjct:   379 PNLVFKETLAGNEELKGFTGHATKTAALDYIISVESDVFVPSHSGNMARAVEGHRRFLGH 438

Query:   301 RKTITPDRRGLVELFDKLKSGKLREGPSFSQRVQQIHENWQXXXXXXXXXXXXXXXXARF 360
             R+TITPDR+GLV+LF K++ G+L+EGP  S  V Q+H++ Q                ARF
Sbjct:   439 RRTITPDRKGLVKLFVKMERGQLKEGPKLSNFVNQMHKDRQGAPRRRKGPTQGIKGRARF 498

Query:   361 RTEESFYENPYPECICSSK 379
             RTEE+FYENPYPECICSSK
Sbjct:   499 RTEEAFYENPYPECICSSK 517




GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005634 "nucleus" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISM
TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00034821001
SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (432 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
cd11299290 cd11299, O-FucT_plant, GDP-fucose protein O-fucosy 1e-141
pfam10250315 pfam10250, O-FucT, GDP-fucose protein O-fucosyltra 1e-109
cd11296206 cd11296, O-FucT_like, GDP-fucose protein O-fucosyl 6e-12
>gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily Back     alignment and domain information
 Score =  403 bits (1037), Expect = e-141
 Identities = 161/306 (52%), Positives = 204/306 (66%), Gaps = 38/306 (12%)

Query: 1   MVAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVP 60
            VAVA ++NATLV+P+LDK S W DSS F D++D  HFIK+L+ D+R+ K+LP+EL S  
Sbjct: 20  AVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKSLKDDVRVVKKLPEELASKK 79

Query: 61  RAR--KHFTSWSGVGYY-EEMTQLFKEYQVIHVAKSDSRLANNDLPLDIQRLRCRALYYA 117
                K   S S   YY EE+  L K++ VI +A  DSRLAN+ LP +IQRLRCR  ++A
Sbjct: 80  PEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLANDLLPPEIQRLRCRVNFHA 139

Query: 118 LRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMREN 177
           LRF P IE LG+KLV+RLR  GG ++ALHLR+EKDML+F+GC                  
Sbjct: 140 LRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSGC------------------ 181

Query: 178 TNHWKVKKINSTEQRIGGYCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELM 237
                            G CPLTP+EVG+ L+ALG+P ST IY+AAGEIYGG   L  L 
Sbjct: 182 -----------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLR 224

Query: 238 YRFPNLVFKETLATKEELKAFANHASQTAALDYLISVESDVFIPSHSGNMARAVEGHRRF 297
             FPNL  KETLAT EEL  F+ H+S+ AALDY++ +ESDVF+P++ GN A+AV GHRR+
Sbjct: 225 SIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGGNFAKAVAGHRRY 284

Query: 298 LGHRKT 303
           LGHRKT
Sbjct: 285 LGHRKT 290


Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290

>gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase Back     alignment and domain information
>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
PF10250351 O-FucT: GDP-fucose protein O-fucosyltransferase; I 100.0
PF05830321 NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 94.51
KOG3849386 consensus GDP-fucose protein O-fucosyltransferase 90.93
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats Back     alignment and domain information
Probab=100.00  E-value=2.3e-53  Score=413.70  Aligned_cols=282  Identities=40%  Similarity=0.633  Sum_probs=194.9

Q ss_pred             CEeeeecccceEeccccCCCCccCCCCC-----CCCCcChHHHHHhccCCeEEeccCChhhcCCcc--------------
Q 043543            1 MVAVAHIMNATLVIPQLDKRSFWKDSST-----FSDMFDEVHFIKTLRGDLRIAKELPKELESVPR--------------   61 (381)
Q Consensus         1 aV~vAR~LNATLVlP~l~~~s~w~D~S~-----F~dIfD~d~Fi~~L~~dVrIvk~LP~~~~~~~~--------------   61 (381)
                      ||++|++||+|||||.+...+.|++.++     |+++||+++|++.++.+|.+.+.+|..+.....              
T Consensus        20 a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~~~~~~~~~~~~~~~   99 (351)
T PF10250_consen   20 AVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFRLQYCWSPWESGSWD   99 (351)
T ss_dssp             HHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-EEEESS-B------
T ss_pred             HHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccchhhcccccccccch
Confidence            5789999999999999999999999988     999999999999999999999999876654211              


Q ss_pred             -----------------ccccccc-cccchhh-HHhHHHhhhc------cEEEEeecCCccccCCCChhHHHHhhhhhcc
Q 043543           62 -----------------ARKHFTS-WSGVGYY-EEMTQLFKEY------QVIHVAKSDSRLANNDLPLDIQRLRCRALYY  116 (381)
Q Consensus        62 -----------------~~~~p~~-~s~~~yy-~~ilp~l~k~------~Vi~l~~~~~rla~~~lp~~iq~LRCr~nf~  116 (381)
                                       ....+.. |+...+| ++++|.+.++      +|+.|.++...+..+.++.++|+        
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~r--------  171 (351)
T PF10250_consen  100 DNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYLDRDLQR--------  171 (351)
T ss_dssp             --TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GGGGGGGG--------
T ss_pred             hhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcccCccceE--------
Confidence                             1112223 7888888 7799999987      99999999999998888999987        


Q ss_pred             cccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCCC
Q 043543          117 ALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGGY  196 (381)
Q Consensus       117 ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G~  196 (381)
                      +|+|+++|+++|++++++|...++||||+|||+|+||  +++|.+++   +...|+.+|.    |..+.+++...+..+.
T Consensus       172 ~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~  242 (351)
T PF10250_consen  172 YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WGKKSINPEKKRRNGC  242 (351)
T ss_dssp             G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-GGGTT-----HHHH
T ss_pred             EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hccccccchhhhhcCC
Confidence            9999999999999999999955569999999999999  88999955   7777887775    2445577778899999


Q ss_pred             CCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheecccC
Q 043543          197 CPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVES  276 (381)
Q Consensus       197 CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~S  276 (381)
                      ||++|++++.+++++|+.+.|.||||+++++||.+.|++|++.||++++|+++.+.+|+++|.+  .++|+||++||++|
T Consensus       243 ~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s  320 (351)
T PF10250_consen  243 CPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRS  320 (351)
T ss_dssp             S--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHS
T ss_pred             CCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999966  99999999999999


Q ss_pred             ceeeeCCCCchhHhHhHhhhhcCCC
Q 043543          277 DVFIPSHSGNMARAVEGHRRFLGHR  301 (381)
Q Consensus       277 DvFv~t~~Gnf~~~v~GhR~y~G~~  301 (381)
                      |+||+|..++|+.+|+++|.|.|+.
T Consensus       321 ~~Figt~~Stfs~~i~~~R~~~g~~  345 (351)
T PF10250_consen  321 DVFIGTCGSTFSSNIARERHYRGKP  345 (351)
T ss_dssp             SEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred             CEEEecCcchhHHHhhcccCcCCCC
Confidence            9999999999999999999999965



Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.

>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation Back     alignment and domain information
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 61/457 (13%), Positives = 121/457 (26%), Gaps = 124/457 (27%)

Query: 2   VAVAHIMNATLVIPQLDKRSFWKDSSTFSDMFDEVHFIKTLRGDLRIAKELPKELESVPR 61
                +  +  V  ++D + FW +    +     +  ++ L    +I        +    
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL--YQIDPNWTSRSDHSSN 222

Query: 62  ARKHFTSWSGVGYYEEMTQLF--KEYQ---VI--HVAKSDSRLANNDLPLDIQRLRCRAL 114
            +    S        E+ +L   K Y+   ++  +V   +++  N     ++    C+ L
Sbjct: 223 IKLRIHSI-----QAELRRLLKSKPYENCLLVLLNV--QNAKAWN---AFNLS---CKIL 269

Query: 115 YYALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKEL--- 171
               RF    + L                  H+  +   +        LT  E K L   
Sbjct: 270 LTT-RFKQVTDFLSAATTT------------HISLDHHSM-------TLTPDEVKSLLLK 309

Query: 172 -------------------------TIMRENTNHWK------VKKINSTEQRIGGYCPLT 200
                                      +R+    W         K+ +  +       L 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLE 367

Query: 201 PKEVGIFLQALG-YPPSTIIYIAAGEIYGGNT--------------------HLSELMYR 239
           P E       L  +PPS  I      +   +                        E    
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

Query: 240 FPNLVFKETLATKEEL---KAFANHASQTAALDY--LISVESDVFIPSHSG-NMARAVEG 293
            P++  +  +  + E    ++  +H +     D   LI    D +  SH G ++      
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487

Query: 294 HR-----------RFLG----HRKTITPDRRGLVELFDKLKSGK---LREGPSFSQRVQQ 335
            R           RFL     H  T       ++    +LK  K       P + + V  
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547

Query: 336 IHENWQG-GPRKRKGPLPGIKGRARFRTEESFYENPY 371
           I +                +   A    +E+ +E  +
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
4ap5_A408 GDP-fucose protein O-fucosyltransferase 2; GT-B, G 99.35
3zy2_A362 Putative GDP-fucose protein O-fucosyltransferase; 98.57
2de0_X526 Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran 96.83
2hhc_A330 NODZ, nodulation fucosyltransferase NODZ; glycosyl 95.14
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* Back     alignment and structure
Probab=99.35  E-value=4.5e-12  Score=126.50  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=108.2

Q ss_pred             ccccccchHHHHHHHHHHHHHhcCCCeEEEeccchhhhHhhhcCCCCCChhHHHHHHHHHhhccccccccCCchhhhcCC
Q 043543          116 YALRFSPPIEILGEKLVERLRSLGGRYIALHLRYEKDMLSFTGCTYGLTDAESKELTIMRENTNHWKVKKINSTEQRIGG  195 (381)
Q Consensus       116 ~ALrF~p~I~~lg~~lV~Rlr~~g~pfiAlHLR~E~Dmla~sgC~~g~~~~e~~eL~~~R~~~~~w~~k~i~~~~~R~~G  195 (381)
                      ..|+|++.|.++|+..++..-.  .+|+++|+|...|+...  |.......-      --+.--||+..+..   .-...
T Consensus       217 r~l~~s~~l~~~a~~fi~~~L~--~~~~~~h~r~~~dw~~~--~~~~~~~~~------~~y~~~H~Rr~d~~---~~~~~  283 (408)
T 4ap5_A          217 RSMVFARHLREVGDEFRSRHLN--STDDADRIPFQEDWMKM--KVKLGSALG------GPYLGVHLRRKDFI---WGHRQ  283 (408)
T ss_dssp             HTCCBCHHHHHHHHHHHHHHHC--CCTTTTTCCCCSSGGGC--CCCTTCBCC------EEEEEEEECCTTTT---TTTCS
T ss_pred             HHhhhhHHHHHHHHHHHHHHhC--cccceeecccchhHhhh--hcccccccC------CCccccccccccch---hhhhc
Confidence            4799999999999998886553  48888999888888764  443211000      00111233322110   00122


Q ss_pred             CCCCCHHHHHHHHHHhCCCCCcEEEEeeccccCCcccchHHHHhCCCcccccccCCHHHHHHHHhhhhhhhhhhheeccc
Q 043543          196 YCPLTPKEVGIFLQALGYPPSTIIYIAAGEIYGGNTHLSELMYRFPNLVFKETLATKEELKAFANHASQTAALDYLISVE  275 (381)
Q Consensus       196 ~CPLtPeEvgl~LralGf~~~T~IYlA~g~iygg~~~l~~L~~~fP~l~tKe~L~~~~eL~~f~~~s~~~aAlDy~V~~~  275 (381)
                      .+|-.++-+..+.+.+.=-+-+.||||+-+   .++.+..|++.+|.++.-..  ..+++..+  .....|.||-+||.+
T Consensus       284 ~~ps~~~~~~~i~~~~~~~~~~~VyiATD~---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~  356 (408)
T 4ap5_A          284 DVPSLEGAVRKIRSLMKTHRLDKVFVATDA---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAH  356 (408)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTCSCEEEEECC---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCEEEEeCCC---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHh
Confidence            334333333333333322244579999865   24446789999998754322  34566666  345779999999999


Q ss_pred             CceeeeCCCCchhHhHhHhhhhcCCC
Q 043543          276 SDVFIPSHSGNMARAVEGHRRFLGHR  301 (381)
Q Consensus       276 SDvFv~t~~Gnf~~~v~GhR~y~G~~  301 (381)
                      ||+||+|..++|+..|.-.|.+.|+.
T Consensus       357 a~~FiGt~~StfS~~I~~eR~~~G~~  382 (408)
T 4ap5_A          357 ARFFIGTSVSTFSFRIHEEREILGLD  382 (408)
T ss_dssp             EEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred             CCeeEeCCcCchhHHHHHHHHhcCCC
Confidence            99999999999999999999999976



>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Back     alignment and structure
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Back     alignment and structure
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00